HHsearch alignment for GI: 254780829 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.84 E-value=1.8e-07 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.385 Sum_probs=51.7
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHC-CCCCCC-HHHH
Q ss_conf 25543345126886155424678887643468899999999875196899842499999999998404-001237-2467
Q gi|254780829|r 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS-TVGDIG-ARRL 389 (437)
Q Consensus 312 lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t-~~~~~G-AR~L 389 (437)
T Consensus 161 ~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~----m~~~ReY---------~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~v 227 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIAER----MVKEREY---------KLTEEAKWKLREHLAKVDQLSSREFSNARYV 227 (261)
T ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 07797776650541889988899999999----9864642---------2578899999999741244421005762012
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780829|r 390 QTVMERVL 397 (437)
Q Consensus 390 rtI~E~~l 397 (437)
T Consensus 228 RN~iE~AI 235 (261)
T TIGR02881 228 RNIIEKAI 235 (261)
T ss_pred HHHHHHHH
T ss_conf 42889999