HHsearch alignment for GI: 254780829 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=96.41 E-value=0.0046 Score=39.28 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHH--------------------------HHCCCCC-----CC----------------CCCCCC
Q ss_conf 868999999999987788--------------------------6408644-----44----------------665668
Q gi|254780829|r 22 GQQDAKRAVAIALRNRWR--------------------------RQQLPAD-----LR----------------DELMPK 54 (437)
Q Consensus 22 GQ~~AKk~lavav~nhy~--------------------------R~~~~~~-----~~----------------~e~~ps 54 (437)
T Consensus 85 ~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~s 164 (451)
T TIGR02915 85 DRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPS 164 (451)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCC
T ss_conf 83889999643751013578757899999999888888888769987406887410365220685067898886521200
Q ss_pred C--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEE
Q ss_conf 6--6996798886899999999970---7877971434101
Q gi|254780829|r 55 N--ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFT 90 (437)
Q Consensus 55 N--iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ft 90 (437)
T Consensus 165 d~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIP 205 (451)
T TIGR02915 165 DITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIP 205 (451)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 00130104667117899989842057897773444167457