HHsearch alignment for GI: 254780829 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=1.4e-05 Score=55.60 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-HHHHHH
Q ss_conf 5543345126886155424678887643468899999999875196899842499999999998404001237-246799
Q gi|254780829|r 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG-ARRLQT 391 (437)
Q Consensus 313 ipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~G-AR~Lrt 391 (437)
T Consensus 176 ~~~l~qRI~~~~~L~pl~~eet~~YI~-------~RL~~--AG~~~~~~Ft~~A~~~I~~~S~---------G~PR~IN~ 237 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIE-------HRLER--AGNRDAPVFSEGAFDAIHRFSR---------GIPRLINI 237 (269)
T ss_pred HHHHHHCEEEEEEECCCCHHHHHHHHH-------HHHHH--CCCCCCCCCCHHHHHHHHHHCC---------CCHHHHHH
T ss_conf 254555076799847999899999999-------99986--6999999859999999999869---------90089999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf 99998677621275687768998599999899999
Q gi|254780829|r 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 (437)
Q Consensus 392 I~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l 426 (437)
T Consensus 238 Lc~~aLl~a----~~~~~--~~I~~~~v~~~~~el 266 (269)
T TIGR03015 238 LCDRLLLSA----FLEEK--REIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHH----HHHCC--CCCCHHHHHHHHHHH
T ss_conf 999999999----99488--867999999999976