HHsearch alignment for GI: 254780829 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=1.4e-30 Score=217.67 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=178.2
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf 99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV 86 (437)
Q Consensus 11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da 86 (437)
T Consensus 558 ~Le~~L~~rViGQd~AI~~I~~aI~----~sr--aGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM 631 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM 631 (852)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 7888899897170999999999999----997--1888899974589986788776899999999998558520698430
Q ss_pred CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r 87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155 (437)
Q Consensus 87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (437)
T Consensus 632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lte~-------vr~~PysVv----L~DEIEK---------Ah~~V~~~lLQil 691 (852)
T TIGR03346 632 SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------VRRKPYSVV----LFDEVEK---------AHPDVFNVLLQVL 691 (852)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCEECHH-------HHHCCCEEE----EECCHHH---------HCHHHHHHHHHHH
T ss_conf 4430122477855899976776878742398-------981988799----8530543---------0768999999882
Q ss_pred HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
T Consensus 692 D~G~ltD~~Gr~vd--------------------F~NtiiimTS-------------------N~Ga~~i~~~~------ 726 (852)
T TIGR03346 692 DDGRLTDGQGRTVD--------------------FRNTVIIMTS-------------------NLGSQFIQELA------ 726 (852)
T ss_pred CCCEEECCCCCEEE--------------------EEEEEEEEEC-------------------CCCHHHHHHHC------
T ss_conf 36743079998885--------------------3556898615-------------------40659997411------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
T Consensus 727 -----------------------------~~~~~~~~~~~~~~~--------------------~---------~~~F~P 748 (852)
T TIGR03346 727 -----------------------------GGDDYEEMREAVMEV--------------------L---------RAHFRP 748 (852)
T ss_pred -----------------------------CCCCHHHHHHHHHHH--------------------H---------HHHCCH
T ss_conf -----------------------------455579999999999--------------------9---------965899
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
T Consensus 749 EflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~-----~~GAR~l~r~i~ 819 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDP-----VYGARPLKRAIQ 819 (852)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf 89963786898378999999999999----999999999977984998889999999848897-----747156999999
Q ss_pred HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf 9867762127----568776899859
Q gi|254780829|r 395 RVLEDISFSA----SDLQEKTVVIDA 416 (437)
Q Consensus 395 ~~l~d~~fe~----p~~~~~~v~Id~ 416 (437)
T Consensus 820 ~~i~~~la~~iL~g~~~~g~~v~v~~ 845 (852)
T TIGR03346 820 REIENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99889999999748889959899997