HHsearch alignment for GI: 254780829 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97  E-value=1.4e-30  Score=217.67  Aligned_cols=268  Identities=24%  Similarity=0.395  Sum_probs=178.2

Q ss_pred             HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf             99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r   11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV   86 (437)
Q Consensus        11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da   86 (437)
T Consensus       558 ~Le~~L~~rViGQd~AI~~I~~aI~----~sr--aGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM  631 (852)
T TIGR03346       558 HMEEVLHERVVGQDEAVEAVSDAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM  631 (852)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf             7888899897170999999999999----997--1888899974589986788776899999999998558520698430


Q ss_pred             CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r   87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL  155 (437)
Q Consensus        87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  155 (437)
T Consensus       632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lte~-------vr~~PysVv----L~DEIEK---------Ah~~V~~~lLQil  691 (852)
T TIGR03346       632 SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------VRRKPYSVV----LFDEVEK---------AHPDVFNVLLQVL  691 (852)
T ss_pred             HHHCCHHHHHHHCCCCCCCCCCCCCCEECHH-------HHHCCCEEE----EECCHHH---------HCHHHHHHHHHHH
T ss_conf             4430122477855899976776878742398-------981988799----8530543---------0768999999882


Q ss_pred             HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r  156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH  234 (437)
Q Consensus       156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  234 (437)
T Consensus       692 D~G~ltD~~Gr~vd--------------------F~NtiiimTS-------------------N~Ga~~i~~~~------  726 (852)
T TIGR03346       692 DDGRLTDGQGRTVD--------------------FRNTVIIMTS-------------------NLGSQFIQELA------  726 (852)
T ss_pred             CCCEEECCCCCEEE--------------------EEEEEEEEEC-------------------CCCHHHHHHHC------
T ss_conf             36743079998885--------------------3556898615-------------------40659997411------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r  235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP  314 (437)
Q Consensus       235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip  314 (437)
T Consensus       727 -----------------------------~~~~~~~~~~~~~~~--------------------~---------~~~F~P  748 (852)
T TIGR03346       727 -----------------------------GGDDYEEMREAVMEV--------------------L---------RAHFRP  748 (852)
T ss_pred             -----------------------------CCCCHHHHHHHHHHH--------------------H---------HHHCCH
T ss_conf             -----------------------------455579999999999--------------------9---------965899


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME  394 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E  394 (437)
T Consensus       749 EflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~-----~~GAR~l~r~i~  819 (852)
T TIGR03346       749 EFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDP-----VYGARPLKRAIQ  819 (852)
T ss_pred             HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf             89963786898378999999999999----999999999977984998889999999848897-----747156999999


Q ss_pred             HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf             9867762127----568776899859
Q gi|254780829|r  395 RVLEDISFSA----SDLQEKTVVIDA  416 (437)
Q Consensus       395 ~~l~d~~fe~----p~~~~~~v~Id~  416 (437)
T Consensus       820 ~~i~~~la~~iL~g~~~~g~~v~v~~  845 (852)
T TIGR03346       820 REIENPLAKKILAGEVADGDTIVVDV  845 (852)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             99889999999748889959899997