HHsearch alignment for GI: 254780829 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.28 E-value=1.4e-06 Score=62.03 Aligned_cols=58 Identities=29% Similarity=0.555 Sum_probs=40.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6699679888689999999997078779714341012122343101346788876521278
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~ 115 (437)
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~-~~g~si~eif~~~Ge~~FR~~E 58 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQ-RAGMSIPEIFAEEGEEGFRELE 58 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHH-HHCCCHHHHHHHCCHHHHHHHH
T ss_conf 9899889999889999999999798979685--99999-9499999999874938789999