HHsearch alignment for GI: 254780829 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=96.00  E-value=0.0051  Score=38.98  Aligned_cols=30  Identities=33%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHH---HCCCEEEEE
Q ss_conf             699679888689999999997---078779714
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARL---AGAPFIKVE   85 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~---l~VPF~~~d   85 (437)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             158768999999999999999987699789999