HHsearch alignment for GI: 254780829 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.

Probab=95.82  E-value=0.014  Score=36.16  Aligned_cols=51  Identities=24%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECC-CEEECCCC-CCCH
Q ss_conf             665668669967988868999999999---707877971434-10121223-4310
Q gi|254780829|r   49 DELMPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVT-KFTEIGYV-GRNV   99 (437)
Q Consensus        49 ~e~~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT-~ftE~gyv-G~DV   99 (437)
T Consensus        38 ~~~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d~   93 (410)
T cd01127          38 KDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATDI   93 (410)
T ss_pred             CCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCE
T ss_conf             65202747998899998899999999999986990999958854999975447766