HHsearch alignment for GI: 254780829 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.20 E-value=0.017 Score=35.51 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
T Consensus 25 taivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999899999999999986304