HHsearch alignment for GI: 254780829 and conserved domain: cd03240

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.20  E-value=0.017  Score=35.51  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
T Consensus        25 taivG~NGaGKSTLl~~i~~~l   46 (204)
T cd03240          25 TLIVGQNGAGKTTIIEALKYAL   46 (204)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC
T ss_conf             9999899999999999986304