HHsearch alignment for GI: 254780829 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.55 E-value=0.0091 Score=37.34 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87999999999999859999999967254