HHsearch alignment for GI: 254780829 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.46 E-value=0.013 Score=36.43 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf 6996798886899999999970787--79714341012---------12234310
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV 99 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV 99 (437)
T Consensus 32 iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 86 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 9999999998999999982386188518999999923189999974069991589