HHsearch alignment for GI: 254780829 and conserved domain: cd03299
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0027 Score=40.79 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=23.1
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 21 ~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~ 50 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999996359999999974999