HHsearch alignment for GI: 254780829 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.37 E-value=0.0023 Score=41.22 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=23.5
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 656686-699679888689999999997078
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p 52 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9869989999999988099999999769999