HHsearch alignment for GI: 254780829 and conserved domain: pfam00910
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=96.72 E-value=0.0013 Score=42.87 Aligned_cols=43 Identities=37% Similarity=0.571 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CC----EEE-EECCCEEECCCCCCCH
Q ss_conf 69967988868999999999707----87----797-1434101212234310
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG----AP----FIK-VEVTKFTEIGYVGRNV 99 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~----VP----F~~-~daT~ftE~gyvG~DV 99 (437)
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~w-dgY~gq~v 52 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFW-DGYTGQPV 52 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC-CCCCCCEE
T ss_conf 98979998988999999999999983778789779678877656-78899857