HHsearch alignment for GI: 254780829 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54  E-value=6.1e-14  Score=109.80  Aligned_cols=70  Identities=31%  Similarity=0.514  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
T Consensus        16 ~~lRP~~----l~e~-vGQehl~~~l~~~i~a~~--------~~~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~   81 (234)
T pfam05496        16 RSLRPRR----LDEY-IGQEKVKENLKIFIEAAK--------KRGEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRIT   81 (234)
T ss_pred             HCCCCCC----HHHC-CCHHHHHHHHHHHHHHHH--------HCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             5549897----6660-694999999999999887--------427776-6278878999988899999998408753761


Q ss_pred             ECCC
Q ss_conf             4341
Q gi|254780829|r   85 EVTK   88 (437)
Q Consensus        85 daT~   88 (437)
T Consensus        82 s~~~   85 (234)
T pfam05496        82 SGPA   85 (234)
T ss_pred             CCHH
T ss_conf             4266