HHsearch alignment for GI: 254780829 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54 E-value=6.1e-14 Score=109.80 Aligned_cols=70 Identities=31% Similarity=0.514 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
T Consensus 16 ~~lRP~~----l~e~-vGQehl~~~l~~~i~a~~--------~~~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~ 81 (234)
T pfam05496 16 RSLRPRR----LDEY-IGQEKVKENLKIFIEAAK--------KRGEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRIT 81 (234)
T ss_pred HCCCCCC----HHHC-CCHHHHHHHHHHHHHHHH--------HCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 5549897----6660-694999999999999887--------427776-6278878999988899999998408753761
Q ss_pred ECCC
Q ss_conf 4341
Q gi|254780829|r 85 EVTK 88 (437)
Q Consensus 85 daT~ 88 (437)
T Consensus 82 s~~~ 85 (234)
T pfam05496 82 SGPA 85 (234)
T ss_pred CCHH
T ss_conf 4266