HHsearch alignment for GI: 254780829 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.46 E-value=0.012 Score=36.50 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH--HHH--CCCEEEEE
Q ss_conf 866996798886899999999--970--78779714
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLA--RLA--GAPFIKVE 85 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA--~~l--~VPF~~~d 85 (437)
T Consensus 20 s~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis 55 (231)
T pfam06745 20 RVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVT 55 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 699998589725999999999999986589689998