HHsearch alignment for GI: 254780829 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.72 E-value=0.00065 Score=44.76 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=64.1
Q ss_pred HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 98620304868999999999987788640864-44466566866996798886899999999970787797143410121
Q gi|254780829|r 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
T Consensus 199 ~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS~a 274 (509)
T smart00350 199 RSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAV 274 (509)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf 85497323878899999999708876648988504154---1499846998236299999998588606-8734445557
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2234---310134678887652127899856549888868887
Q gi|254780829|r 93 GYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 (437)
Q Consensus 93 gyvG---~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~ 132 (437)
T Consensus 275 GLTaav~rd~~~g--e-~~leaGALVlAD~GiccIDEfdKm~~ 314 (509)
T smart00350 275 GLTAAVTRDPETR--E-FTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred CCEEEEEECCCCC--C-EEECCCCEECCCCCEEEEEEHHHCCH
T ss_conf 7068999817888--3-78725641205675478521320787