HHsearch alignment for GI: 254780829 and conserved domain: smart00350

>smart00350 MCM minichromosome maintenance proteins.
Probab=96.72  E-value=0.00065  Score=44.76  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=64.1

Q ss_pred             HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             98620304868999999999987788640864-44466566866996798886899999999970787797143410121
Q gi|254780829|r   14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
T Consensus       199 ~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS~a  274 (509)
T smart00350      199 RSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAV  274 (509)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf             85497323878899999999708876648988504154---1499846998236299999998588606-8734445557


Q ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2234---310134678887652127899856549888868887
Q gi|254780829|r   93 GYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE  132 (437)
Q Consensus        93 gyvG---~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~  132 (437)
T Consensus       275 GLTaav~rd~~~g--e-~~leaGALVlAD~GiccIDEfdKm~~  314 (509)
T smart00350      275 GLTAAVTRDPETR--E-FTLEGGALVLADNGVCCIDEFDKMDD  314 (509)
T ss_pred             CCEEEEEECCCCC--C-EEECCCCEECCCCCEEEEEEHHHCCH
T ss_conf             7068999817888--3-78725641205675478521320787