BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] (437 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040506|gb|ACT57302.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/437 (100%), Positives = 437/437 (100%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG Sbjct: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD Sbjct: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD Sbjct: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM Sbjct: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA Sbjct: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL Sbjct: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR Sbjct: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 Query: 421 LHIGDFPSETDMYHFIL 437 LHIGDFPSETDMYHFIL Sbjct: 421 LHIGDFPSETDMYHFIL 437 >gi|315122053|ref|YP_004062542.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495455|gb|ADR52054.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 437 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/436 (87%), Positives = 417/436 (95%), Gaps = 1/436 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 LTFNFSPREIV+ELDRYI+GQ DAKRAVAIALRNRWRRQQL +LRDE+MPKNILLVGPT Sbjct: 2 LTFNFSPREIVAELDRYIVGQLDAKRAVAIALRNRWRRQQLSENLRDEVMPKNILLVGPT 61 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKTAISRRLA+LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA+N+VRE+RRDEV Sbjct: 62 GVGKTAISRRLAKLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAVNLVRENRRDEV 121 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 RE+AS+NAEERILDALVGKTATS TRE+FR+K RDGE+SDKEIDIEVADTS DIS+FDIP Sbjct: 122 REKASLNAEERILDALVGKTATSTTRELFRQKFRDGEVSDKEIDIEVADTSPDISSFDIP 181 Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G GA+VG+LNLSELFSKVMG RKKKIRMSVQKCYPEL+RDESD+LID+DTVHR+SIQMV Sbjct: 182 GAGANVGVLNLSELFSKVMGGVRKKKIRMSVQKCYPELVRDESDQLIDIDTVHRESIQMV 241 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E+YGIVFLDE DKIVAR+SG+G GVSREGVQRDLLPLVEGSSVSTKYG++NT HILFIAS Sbjct: 242 EHYGIVFLDEIDKIVARESGDGAGVSREGVQRDLLPLVEGSSVSTKYGTVNTQHILFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVSRP+DLLPE+QGRFPVRVHLK L++ DFRLILTDTESNLI+QYKELMKTEG+ LD Sbjct: 302 GAFHVSRPSDLLPEMQGRFPVRVHLKPLSRDDFRLILTDTESNLIVQYKELMKTEGVTLD 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FTEDSIDAL+DVAVNLNS VGDIGARRLQTVMERVLEDISFSAS+LQEKTVVIDAEYVRL Sbjct: 362 FTEDSIDALSDVAVNLNSVVGDIGARRLQTVMERVLEDISFSASELQEKTVVIDAEYVRL 421 Query: 422 HIGDFPSETDMYHFIL 437 H+GDF SE+D+ +IL Sbjct: 422 HMGDFSSESDISRYIL 437 >gi|190889691|ref|YP_001976233.1| ATP-dependent heat shock protease HslVU protein, chaperone ATP-binding subunit HslU [Rhizobium etli CIAT 652] gi|238692525|sp|B3PWI7|HSLU_RHIE6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|190694970|gb|ACE89055.1| ATP-dependent heat shock protease HslVU protein, chaperone ATP-binding subunit HslU [Rhizobium etli CIAT 652] Length = 435 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 305/434 (70%), Positives = 364/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVADT S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D + IDA YVR H+ Sbjct: 362 EDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|327189983|gb|EGE57105.1| ATP-dependent heat shock protease HslVU protein, chaperone ATP-binding subunit HslU [Rhizobium etli CNPAF512] Length = 435 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 305/434 (70%), Positives = 364/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQSK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVADT S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLSLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D + IDA YVR H+ Sbjct: 362 EDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRSGTAITIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|209551554|ref|YP_002283471.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238065801|sp|B5ZV99|HSLU_RHILW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|209537310|gb|ACI57245.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 435 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 304/434 (70%), Positives = 363/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRTEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRESFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+FT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETESLNLEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D V IDA YVR H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|116249817|ref|YP_765655.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium leguminosarum bv. viciae 3841] gi|166221599|sp|Q1MNB3|HSLU_RHIL3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|115254465|emb|CAK05539.1| putative ATP-dependent heat shock protease component [Rhizobium leguminosarum bv. viciae 3841] Length = 435 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 304/434 (70%), Positives = 363/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYSDLIRDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + L+FT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKDDFRRILTETEASLIRQYRALMETESLSLEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D V IDA YVR H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|86355717|ref|YP_467609.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42] gi|123513487|sp|Q2KE54|HSLU_RHIEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|86279819|gb|ABC88882.1| heat shock protease HslVU, subunit HslU chaperone protein (ATP-dependent protease ATP-binding subunit hslU) [Rhizobium etli CFN 42] Length = 435 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/434 (69%), Positives = 363/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I ++RE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLMREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRATEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI QY+ LM+TE + LDFT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQYRALMETENLNLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D + IDA YVR H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRAGAAITIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|241206994|ref|YP_002978090.1| ATP-dependent protease ATP-binding subunit HslU [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860884|gb|ACS58551.1| heat shock protein HslVU, ATPase subunit HslU [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 435 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 303/434 (69%), Positives = 363/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD S + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADAGSGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+ DESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYGDLILDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+FT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRALNKDDFRRILTETEASLIRQYRALMETESLSLEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D V IDA YVR H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAVTIDAAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAQNTDLSRFIL 435 >gi|325291499|ref|YP_004277363.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp. H13-3] gi|325059352|gb|ADY63043.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium sp. H13-3] Length = 435 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 302/434 (69%), Positives = 364/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD+ S + F+IPG Sbjct: 123 AHQSAEERVLDALVGSTASPATRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V K Y +L+RDESD+L+D D + R++++ VEN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVSKSYTDLVRDESDKLLDNDMIQREAVKSVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDFT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D V ID EYV+ H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKHV 421 Query: 424 GDFPSETDMYHFIL 437 GD ++TD+ +IL Sbjct: 422 GDLAADTDLSRYIL 435 >gi|15887403|ref|NP_353084.1| ATP-dependent protease ATP-binding subunit [Agrobacterium tumefaciens str. C58] gi|22653792|sp|Q8UJ87|HSLU_AGRT5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|15154910|gb|AAK85869.1| heat shock chaperone [Agrobacterium tumefaciens str. C58] Length = 435 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 301/434 (69%), Positives = 364/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRHIIGQHDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVAD+ S + F+IPG Sbjct: 123 AHQSAEERVLDALVGSTASPGTRESFRKKLRDGELDDKEIDIEVADSGSGMPGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V K Y +L+RDESD+L+D + + R++++ VEN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVSKSYTDLVRDESDKLLDNEMIQREAVKSVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDH+LFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHVLFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV LK L K DFR ILT+TE++LI QYK LM TE + LDFT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV+LNS+V +IGARRLQTVMERVL++ISF+A D V ID EYV+ H+ Sbjct: 362 DDAIDALADVAVHLNSSVENIGARRLQTVMERVLDEISFNAPDRGGSAVKIDQEYVKKHV 421 Query: 424 GDFPSETDMYHFIL 437 GD ++TD+ +IL Sbjct: 422 GDLAADTDLSRYIL 435 >gi|222084250|ref|YP_002542776.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium radiobacter K84] gi|254802292|sp|B9JG71|HSLU_AGRRK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|221721698|gb|ACM24854.1| heat shock protein HslVU, ATPase subunit HslU [Agrobacterium radiobacter K84] Length = 436 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 303/435 (69%), Positives = 366/435 (84%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQL DLRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLEPDLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPG- 183 A ++AEER+LDALVG TA+ TR+ FRKKLRDG++ DKEIDIEVADT S + F+IPG Sbjct: 123 AHMSAEERVLDALVGATASPATRDSFRKKLRDGQLDDKEIDIEVADTGSGMPGGFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G+LNLSE+F K MG GR KK+R +V+ Y EL+RDESD+LID + + R++++ E Sbjct: 183 PGANIGVLNLSEMFGKAMG-GRTKKVRTTVKDSYKELVRDESDKLIDNEAIQREAVRSAE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASG Sbjct: 242 DDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L+ L K DFR ILT+ E++LI QYK LM+TE + LDF Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRPLTKEDFRRILTEPEASLIRQYKALMETEDLKLDF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+IDALADVAV+LNSTV +IGARRLQTVMERVL++IS++ASD +V IDA YVR H Sbjct: 362 TDDAIDALADVAVHLNSTVENIGARRLQTVMERVLDEISYNASDRAGVSVTIDAAYVREH 421 Query: 423 IGDFPSETDMYHFIL 437 +GD + TD+ FIL Sbjct: 422 VGDLANNTDLSRFIL 436 >gi|222147041|ref|YP_002547998.1| ATP-dependent protease ATP-binding subunit HslU [Agrobacterium vitis S4] gi|254802293|sp|B9JXW4|HSLU_AGRVS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|221734031|gb|ACM34994.1| heat shock chaperone [Agrobacterium vitis S4] Length = 435 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 296/434 (68%), Positives = 359/434 (82%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQNDAKRAVAIALRNRWRRQQLDESLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +++E +R EV + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLIKEKKRLEVEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+LDALVG TA+ TR+ FRKKLR GE+ DKEIDIEVA+TSS + F+IPG Sbjct: 123 AHAGAEERVLDALVGATASPATRDSFRKKLRAGELDDKEIDIEVAETSSGMPGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA+VGILNLS++F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ VEN Sbjct: 183 GANVGILNLSDMFGKAMG-GRTKKVRTTVKTSYADLIRDESDKLIDNEVIQREAVKSVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIANREGAMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV LK+L K DFR ILT+TE++LI QY LM TE + L+FT Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELKALTKEDFRRILTETEASLIRQYIALMATEQLDLEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALADVAVNLNS++ +IGARRLQTVMERVL DISF+A D V+ID+ YVR H+ Sbjct: 362 EDAIDALADVAVNLNSSIENIGARRLQTVMERVLYDISFNAPDRGGAKVMIDSAYVREHV 421 Query: 424 GDFPSETDMYHFIL 437 G+ ++ D+ +IL Sbjct: 422 GEIAADADLSRYIL 435 >gi|15963811|ref|NP_384164.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti 1021] gi|307310999|ref|ZP_07590644.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium meliloti BL225C] gi|307321943|ref|ZP_07601325.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium meliloti AK83] gi|22653794|sp|Q92TA7|HSLU_RHIME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|15072986|emb|CAC41445.1| Probable heat shock protein [Sinorhizobium meliloti 1021] gi|306892413|gb|EFN23217.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium meliloti AK83] gi|306899679|gb|EFN30306.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium meliloti BL225C] Length = 435 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 290/434 (66%), Positives = 361/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL +LRDE+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A NAEER+LDALVG TA+ TR+ FRKKLR E+ DKEI+++VA+ S F+IPG Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAEAGSPGGAFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K +G GR KK++ +V+ Y L+ DESD+L+D + + R+++ EN Sbjct: 183 GANIGVLNLSEMFGKALG-GRTKKVKTTVKDSYALLVNDESDKLLDNEQIQREAVAAAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+D+SF+A D + V IDAEYVR H+ Sbjct: 362 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDAEYVRRHV 421 Query: 424 GDFPSETDMYHFIL 437 GD + TD+ +IL Sbjct: 422 GDLAANTDLSRYIL 435 >gi|150398458|ref|YP_001328925.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium medicae WSM419] gi|166221612|sp|A6UEL0|HSLU_SINMW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|150029973|gb|ABR62090.1| heat shock protein HslVU, ATPase subunit HslU [Sinorhizobium medicae WSM419] Length = 435 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 289/434 (66%), Positives = 363/434 (83%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL +LRDE+MPKNIL++GPTGVG Sbjct: 3 SFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I++VRE RR EV+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGISLVREKRRAEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A NAEER+LDALVG TA+ TR+ FRKKLR E+ DKEI+++VA+T + F+IPG Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDDKEIEVDVAETGNPGGAFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K +G GR +KI+ +V+ Y L+ DESD+L+D + + R+++ EN Sbjct: 183 GANIGVLNLSEMFGKALG-GRTRKIKTTVKDSYALLVNDESDKLLDNEQIQREAVASAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIATREGGIGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVTLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALA+VAV LNS V +IGARRLQTVMERVL+D+SF+A D + V IDA+YVR+H+ Sbjct: 362 EDAIDALAEVAVQLNSNVENIGARRLQTVMERVLDDVSFNAPDRGGQGVTIDADYVRVHV 421 Query: 424 GDFPSETDMYHFIL 437 GD + TD+ +IL Sbjct: 422 GDLAANTDLSRYIL 435 >gi|227823917|ref|YP_002827890.1| ATP-dependent protease ATP-binding subunit HslU [Sinorhizobium fredii NGR234] gi|254802314|sp|C3MBC8|HSLU_RHISN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|227342919|gb|ACP27137.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Sinorhizobium fredii NGR234] Length = 434 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 290/434 (66%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDRYIIGQ+DAKRAVAIALRNRWRRQQL +LRDE+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLSDELRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVGITLVREKKRAEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A NAEER+LDALVG TA+ TR+ FRKKLR E+ +KEI+I++A+T + F+IPG Sbjct: 123 AHQNAEERVLDALVGTTASPATRDSFRKKLRANELDEKEIEIDIAETGAP-GGFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K +G GR +K++ +V+ Y L+ DESD+L+D + + R+++ EN Sbjct: 182 GANIGVLNLSEMFGKALG-GRTRKVKTTVKDSYELLVNDESDKLLDNEQIQREAMAAAEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA Sbjct: 241 DGIVFLDEIDKIAARDGGIGAGVSREGVQRDLLPLVEGTTVATKYGPMKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QYK L++TEG+ LDFT Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALA+VAV LN+ V +IGARRLQTVMERVL+DISF+A D T++IDA+YVR H+ Sbjct: 361 EDAIDALAEVAVQLNANVENIGARRLQTVMERVLDDISFNAPDRGGDTLMIDADYVRKHV 420 Query: 424 GDFPSETDMYHFIL 437 GD + TD+ +IL Sbjct: 421 GDLAANTDLSRYIL 434 >gi|153008177|ref|YP_001369392.1| ATP-dependent protease ATP-binding subunit HslU [Ochrobactrum anthropi ATCC 49188] gi|166221592|sp|A6WX59|HSLU_OCHA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|151560065|gb|ABS13563.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum anthropi ATCC 49188] Length = 434 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 285/434 (65%), Positives = 361/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +VRE RRD+V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAITLVREKRRDDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEVADT S S F+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVADTGSGPS-FEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G++NLS++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVMNLSDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVTED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGA Sbjct: 241 EGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+ T Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLEIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++IS++A D T VIDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMERVLDEISYTAPDKTGATFVIDAAYVKDKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GSLAKNTDLSRFIL 434 >gi|163757482|ref|ZP_02164571.1| putative ATP-dependent heat shock protease component [Hoeflea phototrophica DFL-43] gi|162284984|gb|EDQ35266.1| putative ATP-dependent heat shock protease component [Hoeflea phototrophica DFL-43] Length = 436 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/435 (65%), Positives = 358/435 (82%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPRE V+ELDR+IIGQ+DAKRAVAIALRNRWRRQQL LR+E+MPKNIL++GPTGVG Sbjct: 3 TFSPRETVTELDRFIIGQKDAKRAVAIALRNRWRRQQLTGPLREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+ I +VRE +R EV + Sbjct: 63 KTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEAGIMLVRERKRGEVEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A +NAEER+LDALVG TA+ TR+ FRKKLRDG + DKEI+IEVAD S+ + FD+PG Sbjct: 123 ARLNAEERVLDALVGATASPATRDSFRKKLRDGLLDDKEIEIEVADNSAGGMPQFDLPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G ++G+LNL++LF K MG GR +KI+ +V+ Y L+ DESD+L+DMD +H+++++ E Sbjct: 183 PGGNIGVLNLNDLFGKAMG-GRTRKIKTTVRDSYDTLIGDESDKLLDMDQIHQEALKSAE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVF+DE DKI R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASG Sbjct: 242 DDGIVFIDEIDKIANREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY LM TE + L+F Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALTKDDFRRILTETEASLIKQYVALMGTEDMTLEF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED+IDALA+VAV+LN ++ +IGARRLQTVMERVL+DISF+A D T+ ID++YVR + Sbjct: 362 TEDAIDALAEVAVHLNGSIENIGARRLQTVMERVLDDISFTAPDQSGSTITIDSDYVRKN 421 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ FIL Sbjct: 422 VGDLAQNTDLSRFIL 436 >gi|23502927|ref|NP_699054.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis 1330] gi|163844097|ref|YP_001628501.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC 23445] gi|225626459|ref|ZP_03784498.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str. Cudo] gi|254690212|ref|ZP_05153466.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 6 str. 870] gi|254694702|ref|ZP_05156530.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 3 str. Tulya] gi|254707400|ref|ZP_05169228.1| ATP-dependent protease ATP-binding subunit HslU [Brucella pinnipedialis M163/99/10] gi|254709057|ref|ZP_05170868.1| ATP-dependent protease ATP-binding subunit HslU [Brucella pinnipedialis B2/94] gi|256030582|ref|ZP_05444196.1| ATP-dependent protease ATP-binding subunit HslU [Brucella pinnipedialis M292/94/1] gi|256060044|ref|ZP_05450226.1| ATP-dependent protease ATP-binding subunit HslU [Brucella neotomae 5K33] gi|256158578|ref|ZP_05456468.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti M490/95/1] gi|256253989|ref|ZP_05459525.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti B1/94] gi|256258467|ref|ZP_05464003.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 9 str. C68] gi|256370477|ref|YP_003107988.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|260169488|ref|ZP_05756299.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp. F5/99] gi|260567450|ref|ZP_05837920.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis bv. 4 str. 40] gi|260755752|ref|ZP_05868100.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 6 str. 870] gi|260884778|ref|ZP_05896392.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 9 str. C68] gi|261215029|ref|ZP_05929310.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 3 str. Tulya] gi|261221129|ref|ZP_05935410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti B1/94] gi|261314887|ref|ZP_05954084.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis M163/99/10] gi|261316555|ref|ZP_05955752.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis B2/94] gi|261324020|ref|ZP_05963217.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella neotomae 5K33] gi|261759013|ref|ZP_06002722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp. F5/99] gi|265987629|ref|ZP_06100186.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis M292/94/1] gi|265997089|ref|ZP_06109646.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M490/95/1] gi|297247307|ref|ZP_06931025.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv. 5 str. B3196] gi|32129634|sp|Q8FY12|HSLU_BRUSU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043905|sp|B0CJH9|HSLU_BRUSI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|23348960|gb|AAN30969.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis 1330] gi|163674820|gb|ABY38931.1| heat shock protein HslVU, ATPase subunit HslU [Brucella suis ATCC 23445] gi|225618116|gb|EEH15159.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ceti str. Cudo] gi|256000640|gb|ACU49039.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|260156968|gb|EEW92048.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis bv. 4 str. 40] gi|260675860|gb|EEX62681.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 6 str. 870] gi|260874306|gb|EEX81375.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 9 str. C68] gi|260916636|gb|EEX83497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 3 str. Tulya] gi|260919713|gb|EEX86366.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti B1/94] gi|261295778|gb|EEX99274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis B2/94] gi|261300000|gb|EEY03497.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella neotomae 5K33] gi|261303913|gb|EEY07410.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis M163/99/10] gi|261738997|gb|EEY26993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp. F5/99] gi|262551557|gb|EEZ07547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M490/95/1] gi|264659826|gb|EEZ30087.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella pinnipedialis M292/94/1] gi|297174476|gb|EFH33823.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus bv. 5 str. B3196] Length = 434 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|254713516|ref|ZP_05175327.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti M644/93/1] gi|254716128|ref|ZP_05177939.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ceti M13/05/1] gi|261217898|ref|ZP_05932179.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M13/05/1] gi|261321252|ref|ZP_05960449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M644/93/1] gi|260922987|gb|EEX89555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M13/05/1] gi|261293942|gb|EEX97438.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella ceti M644/93/1] Length = 434 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL +ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLNEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|306842805|ref|ZP_07475445.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2] gi|306286999|gb|EFM58510.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO2] Length = 434 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|254718122|ref|ZP_05179933.1| ATP-dependent protease ATP-binding subunit HslU [Brucella sp. 83/13] gi|265983074|ref|ZP_06095809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp. 83/13] gi|306839749|ref|ZP_07472551.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF 2653] gi|264661666|gb|EEZ31927.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella sp. 83/13] gi|306405209|gb|EFM61486.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. NF 2653] Length = 434 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGTG-PNFEIPGIP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|254700711|ref|ZP_05162539.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv. 5 str. 513] gi|261751220|ref|ZP_05994929.1| heat shock protein hslU [Brucella suis bv. 5 str. 513] gi|261740973|gb|EEY28899.1| heat shock protein hslU [Brucella suis bv. 5 str. 513] Length = 434 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + + ++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQGALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|17988331|ref|NP_540965.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis bv. 1 str. 16M] gi|256045683|ref|ZP_05448561.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis bv. 1 str. Rev.1] gi|256112404|ref|ZP_05453325.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis bv. 3 str. Ether] gi|260562984|ref|ZP_05833470.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M] gi|265992104|ref|ZP_06104661.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1] gi|265993841|ref|ZP_06106398.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether] gi|22653793|sp|Q8YE30|HSLU_BRUME RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|17984106|gb|AAL53229.1| heat shock protein hslu [Brucella melitensis bv. 1 str. 16M] gi|260153000|gb|EEW88092.1| heat shock protein hslU [Brucella melitensis bv. 1 str. 16M] gi|262764822|gb|EEZ10743.1| heat shock protein hslU [Brucella melitensis bv. 3 str. Ether] gi|263003170|gb|EEZ15463.1| heat shock protein hslU [Brucella melitensis bv. 1 str. Rev.1] Length = 434 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|225853510|ref|YP_002733743.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis ATCC 23457] gi|256263008|ref|ZP_05465540.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9] gi|254802298|sp|C0RFW7|HSLU_BRUMB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|225641875|gb|ACO01789.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis ATCC 23457] gi|263092881|gb|EEZ17056.1| heat shock protein hslU [Brucella melitensis bv. 2 str. 63/9] gi|326410077|gb|ADZ67142.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis M28] gi|326539793|gb|ADZ88008.1| heat shock protein HslVU, ATPase subunit HslU [Brucella melitensis M5-90] Length = 434 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIALVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPVTRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|306843498|ref|ZP_07476099.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1] gi|306276189|gb|EFM57889.1| heat shock protein HslVU, ATPase subunit HslU [Brucella sp. BO1] Length = 434 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVG+TA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGRTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAG-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|62290923|ref|YP_222716.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 1 str. 9-941] gi|82700834|ref|YP_415408.1| ATP-dependent protease ATP-binding subunit HslU [Brucella melitensis biovar Abortus 2308] gi|189025136|ref|YP_001935904.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus S19] gi|237816430|ref|ZP_04595423.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus str. 2308 A] gi|254696329|ref|ZP_05158157.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 2 str. 86/8/59] gi|254731245|ref|ZP_05189823.1| ATP-dependent protease ATP-binding subunit HslU [Brucella abortus bv. 4 str. 292] gi|260546185|ref|ZP_05821925.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038] gi|260758976|ref|ZP_05871324.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 4 str. 292] gi|260760700|ref|ZP_05873043.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 2 str. 86/8/59] gi|81309351|sp|Q57AH9|HSLU_BRUAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123740942|sp|Q2YQZ4|HSLU_BRUA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238689414|sp|B2S978|HSLU_BRUA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62197055|gb|AAX75355.1| HslU, heat shock protein HslVU, ATPase subunit [Brucella abortus bv. 1 str. 9-941] gi|82616935|emb|CAJ12036.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A (P-loop):AAA ATPase:Heat shock protein HslVU [Brucella melitensis biovar Abortus 2308] gi|189020708|gb|ACD73430.1| CbxX/CfqX superfamily [Brucella abortus S19] gi|237788497|gb|EEP62712.1| heat shock protein HslVU, ATPase subunit HslU [Brucella abortus str. 2308 A] gi|260096292|gb|EEW80168.1| CbxX/CfqX superfamily protein [Brucella abortus NCTC 8038] gi|260669294|gb|EEX56234.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 4 str. 292] gi|260671132|gb|EEX57953.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella abortus bv. 2 str. 86/8/59] Length = 434 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/434 (64%), Positives = 363/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTV+E+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVIEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|294851308|ref|ZP_06791981.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026] gi|294819897|gb|EFG36896.1| heat shock protein HslVU [Brucella sp. NVSL 07-0026] Length = 434 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/434 (64%), Positives = 362/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ +KEI+IEV+D+ + NF IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDNKEIEIEVSDSGAS-PNFKIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|148559450|ref|YP_001259884.1| ATP-dependent protease ATP-binding subunit HslU [Brucella ovis ATCC 25840] gi|166221464|sp|A5VT37|HSLU_BRUO2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|148370707|gb|ABQ60686.1| heat shock protein HslVU, ATPase subunit HslU [Brucella ovis ATCC 25840] Length = 434 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 279/434 (64%), Positives = 361/434 (83%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRR A+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRPAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVE ++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEDTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L+F+ Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETEEVKLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ I Sbjct: 361 DDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKI 420 Query: 424 GDFPSETDMYHFIL 437 G TD+ FIL Sbjct: 421 GGLAKNTDLSRFIL 434 >gi|110635818|ref|YP_676026.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1] gi|122965529|sp|Q11CL4|HSLU_MESSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|110286802|gb|ABG64861.1| heat shock protein HslVU, ATPase subunit HslU [Chelativorans sp. BNC1] Length = 436 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 277/434 (63%), Positives = 355/434 (81%), Gaps = 2/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDRYIIGQ++AKRAVAIALRNRWRRQQL LR+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRYIIGQKEAKRAVAIALRNRWRRQQLEPGLREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE R+ V + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVEVAIALTREKMREGVEAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+L+ALVG+TA+ TR+ FR+KLR GE+ DKEI+I+VAD + +F+IPG Sbjct: 123 AHLNAEERVLEALVGRTASPATRDSFRQKLRSGELDDKEIEIQVADAGGGMGSFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN++++ K MG GR K ++ +V+ Y L+ DESD+L+D D V R ++ EN Sbjct: 183 GANIGVLNINDMLQKAMGGGRTKTVKTTVKDSYKFLINDESDKLLDQDEVVRRALSSAEN 242 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDH+LFIASGA Sbjct: 243 DGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHVLFIASGA 302 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY LM+TEG+ L+FT Sbjct: 303 FHVAKPSDLLPELQGRLPIRVELRALEKEDFRRILTETEASLIKQYIALMETEGVELEFT 362 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+I LA+VAV+LN++V +IGARRLQTVMERVL++IS++A D +VIDA YV H+ Sbjct: 363 EDAIVRLAEVAVDLNASVENIGARRLQTVMERVLDEISYNAPDRSGSKMVIDAAYVDQHV 422 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 423 GDLAKNTDLSRFIL 436 >gi|239833120|ref|ZP_04681449.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum intermedium LMG 3301] gi|239825387|gb|EEQ96955.1| heat shock protein HslVU, ATPase subunit HslU [Ochrobactrum intermedium LMG 3301] Length = 441 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 282/434 (64%), Positives = 356/434 (82%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 10 NFSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI +VRE RR++V+ + Sbjct: 70 KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEVAITLVREKRREDVKAK 129 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+L+ALVGKTA+ TR+ FRKKLR+ E+ DKEI+IEVADT S S F+IPG Sbjct: 130 AHLNAEERVLEALVGKTASPATRDSFRKKLRNNELDDKEIEIEVADTGSGPS-FEIPGMP 188 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G++NLS++ K MG GR K + +V+ Y L+ DESD+L+D + + ++++++ E+ Sbjct: 189 GANIGVMNLSDMLGKAMG-GRTKTRKTTVKDSYAILINDESDKLLDQEQIVQEALRVTED 247 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI +R+ G G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFIASGA Sbjct: 248 EGIVFIDEIDKIASREGGMGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASGA 307 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE + L FT Sbjct: 308 FHVSKPSDLLPELQGRLPIRVELNALTREDFRRILTETEASLIKQYIALMETEEVKLTFT 367 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+TV +IGARRLQTVMERVL++ISF+A D IDA YV+ I Sbjct: 368 DDAIDALADIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKTGAVFTIDAAYVKDKI 427 Query: 424 GDFPSETDMYHFIL 437 TD+ FIL Sbjct: 428 DGLAKNTDLSRFIL 441 >gi|319780233|ref|YP_004139709.1| heat shock protein HslVU, ATPase HslU [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166121|gb|ADV09659.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 436 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 282/435 (64%), Positives = 355/435 (81%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE R++V+ + Sbjct: 63 KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183 A +NAEER+L+ALVGKTA+ TR+ FRKKLRDGE+ DKEI++EVADT S + F+IPG Sbjct: 123 AHVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEVEVADTGSGGMPGFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G+LN++++ SK MG + K + +V++ Y L+ DESD+L+D D V R ++ E Sbjct: 183 PGANIGVLNINDMLSKAMGGKKTKMRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAAE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG Sbjct: 243 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L++L K DF ILT+TE++LI QY LMKTEG+ L F Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALEKDDFVRILTETEASLIKQYIALMKTEGVELTF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D +V IDA YV H Sbjct: 362 TDDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 421 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ FIL Sbjct: 422 VGDLSRNTDLSRFIL 436 >gi|13474176|ref|NP_105744.1| ATP-dependent protease ATP-binding subunit HslU [Mesorhizobium loti MAFF303099] gi|14024928|dbj|BAB51530.1| heat shock protein; ATP-dependent HSL protease ATP-binding subunit; HslU [Mesorhizobium loti MAFF303099] Length = 443 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 283/435 (65%), Positives = 354/435 (81%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 10 TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE R++V+ + Sbjct: 70 KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 129 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183 A INAEER+L+ALVGKTA+ TR+ FRKKLRDGE+ DKEI+IEVADT + + F+IPG Sbjct: 130 AHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPGM 189 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G+LN++++ SK MG + K + +V++ Y L+ DESD+L+D D V R ++ E Sbjct: 190 PGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDATE 249 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG Sbjct: 250 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 308 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L++L K DF ILT+TE++LI QY LMKTEG+ L F Sbjct: 309 AFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLTF 368 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D +V IDA YV H Sbjct: 369 TDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 428 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ FIL Sbjct: 429 VGDLSRNTDLSRFIL 443 >gi|22653795|sp|Q98CU1|HSLU_RHILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 436 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 283/435 (65%), Positives = 354/435 (81%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE R++V+ + Sbjct: 63 KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183 A INAEER+L+ALVGKTA+ TR+ FRKKLRDGE+ DKEI+IEVADT + + F+IPG Sbjct: 123 AHINAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGNGGMPGFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G+LN++++ SK MG + K + +V++ Y L+ DESD+L+D D V R ++ E Sbjct: 183 PGANIGVLNINDMLSKAMGGKKTKSRKTTVKESYDLLVSDESDKLLDQDEVVRRALDATE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIASG Sbjct: 243 NDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L++L K DF ILT+TE++LI QY LMKTEG+ L F Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELRALEKQDFVRILTETEASLIKQYIALMKTEGVDLTF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+ID+LA +AV+LN +V +IGARRLQTVMERVL++IS+ A D +V IDA YV H Sbjct: 362 TDDAIDSLAGIAVDLNDSVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEKH 421 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ FIL Sbjct: 422 VGDLSRNTDLSRFIL 436 >gi|260460981|ref|ZP_05809230.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium opportunistum WSM2075] gi|259033015|gb|EEW34277.1| heat shock protein HslVU, ATPase subunit HslU [Mesorhizobium opportunistum WSM2075] Length = 436 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/436 (65%), Positives = 358/436 (82%), Gaps = 6/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE R++V+ + Sbjct: 63 KTEISRRLARLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLVREKMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG- 183 A +NAEER+L+ALVGKTA+ TR+ FRKKLRDGE+ DKEI+IEVADT + + F+IPG Sbjct: 123 AHVNAEERVLEALVGKTASPATRDSFRKKLRDGELDDKEIEIEVADTGTGGMPGFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GA++G+LN++++ SK MG G+K K+R +V++ Y L+ DESD+L+D D V R ++ Sbjct: 183 PGANIGVLNINDMLSKAMG-GKKTKLRKTTVKESYDLLVNDESDKLLDQDEVVRRALDAA 241 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 EN GIVFLDE DKI AR +G G SREGVQRDLLPLVEG++V+TKYG + TDHILFIAS Sbjct: 242 ENDGIVFLDEIDKIAARSDISG-GPSREGVQRDLLPLVEGTTVATKYGPLKTDHILFIAS 300 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVS+P+DLLPE+QGR P+RV L++L K DF ILT+TE++LI QY LMKTEG+ L Sbjct: 301 GAFHVSKPSDLLPELQGRLPIRVELRALEKEDFVRILTETEASLIKQYIALMKTEGVELT 360 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT+D+ID+LA +AV+LN++V +IGARRLQTVMERVL++IS+ A D +V IDA YV Sbjct: 361 FTDDAIDSLAGIAVDLNASVENIGARRLQTVMERVLDEISYDAPDRNGTSVTIDAAYVEK 420 Query: 422 HIGDFPSETDMYHFIL 437 H+GD TD+ FIL Sbjct: 421 HVGDLSRNTDLSRFIL 436 >gi|90420984|ref|ZP_01228888.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas manganoxydans SI85-9A1] gi|90334762|gb|EAS48538.1| heat shock protein HslVU, ATPase subunit HslU [Aurantimonas manganoxydans SI85-9A1] Length = 434 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 281/434 (64%), Positives = 353/434 (81%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL LR+E+MPKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEGSLREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ + Sbjct: 63 KTEISRRLARLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+L+ALVGKTA+ TR+ FRKKLR GE+ DKEID+EV+DTS+ + DIPG Sbjct: 123 AHQGAEDRVLNALVGKTASPATRDSFRKKLRAGELDDKEIDVEVSDTSNPMGGMDIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG R K+ R SV++ Y L+ +ESD+L+D + + R++I VEN Sbjct: 183 GANIGVLNLSEMFGK-MGQ-RTKQRRTSVRESYDLLIGEESDKLLDQEQLVREAISSVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ +D +G GVSREGVQRDLLPLVEG++V+TK+GS+ TDHILFIASGA Sbjct: 241 NGIVFLDEIDKVANKDGQSGAGVSREGVQRDLLPLVEGTTVATKHGSVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++L K DFR ILT+TE++LI QY LMKTE + L T Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELRALTKEDFRRILTETEASLIKQYIALMKTENVDLVIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD AV LN ++ +IGARRLQTVMERVL+DISF A D ++ +DA YV + Sbjct: 361 DDAIDALADTAVALNGSIENIGARRLQTVMERVLDDISFEAPDKSGESCTVDAAYVHKAL 420 Query: 424 GDFPSETDMYHFIL 437 +TD+ FIL Sbjct: 421 DGIAGDTDLSRFIL 434 >gi|49475020|ref|YP_033061.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae str. Houston-1] gi|62286807|sp|Q6G5G0|HSLU_BARHE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|49237825|emb|CAF27020.1| Heat shock protein hslU [Bartonella henselae str. Houston-1] Length = 436 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 276/435 (63%), Positives = 353/435 (81%), Gaps = 7/435 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +RDE+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQSDAKRSVAIALRNRWRRQQLDGPMRDEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A Sbjct: 65 TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKVKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183 INAEER+LDALVGKTA+ TRE FRKKLRDGE+ +KEI+IEV+D +S+ S FDIPG Sbjct: 125 HINAEERVLDALVGKTASPATRESFRKKLRDGELDEKEIEIEVSDNNSNSTSTFDIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +GI+NLSE+F K+ G + K+R +V+ + L+ DES++L+D D + ++++++ E Sbjct: 185 GAQMGIMNLSEIFGKM---GNRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVF+DE DKI RD G VSREGVQRDLLPLVEG++++TKYG I TDHILFIASG Sbjct: 242 NDGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L L + D R ILT+ E++LI QY LM TE + L+ Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA YV+ Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKKS 421 Query: 423 IGDFPSETDMYHFIL 437 IGD ++ D+ FIL Sbjct: 422 IGDLAADVDLSRFIL 436 >gi|114707003|ref|ZP_01439902.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] gi|114537553|gb|EAU40678.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] Length = 433 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 273/434 (62%), Positives = 352/434 (81%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 ++SPREIVSELDR+IIGQ+DAKRAVA+ALRNRWRRQQL LR+E+MPKNIL++GPTGVG Sbjct: 3 DYSPREIVSELDRHIIGQKDAKRAVAVALRNRWRRQQLEPGLREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VEQIIRDLV++ I +VRE +R+EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVEQIIRDLVEIGIGLVREKKREEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+L+ALVGK+A+ T++ FRKKLR GE+ +KEID+EV+DTS+ + DIPG Sbjct: 123 AHKGAEDRVLEALVGKSASPATKDSFRKKLRSGELDEKEIDVEVSDTSNPMGGMDIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K M R K++R +V+ Y L+ +ESD+L+D + + R++++ V+N Sbjct: 183 GANIGVLNLSEMFGKAM--NRTKQVRTTVRDSYDLLIGEESDKLLDQEQLTREAVEAVQN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ +D G+ GVSREGVQRDLLPLVEG++V+TK+G + TDHILFIASGA Sbjct: 241 NGIVFLDEIDKVANKD-GHSAGVSREGVQRDLLPLVEGTTVATKHGPVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++L + DFR ILT+TE++LI QY LMKTE + L T Sbjct: 300 FHVSKPSDLLPELQGRLPIRVELRALTREDFRRILTETEASLIKQYVALMKTENVTLHVT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALAD AV LN +V +IGARRLQTVMERVL+DISF A D +T IDA YV + Sbjct: 360 EDAIDALADTAVKLNGSVENIGARRLQTVMERVLDDISFEAPDKGGETYTIDAAYVHKAL 419 Query: 424 GDFPSETDMYHFIL 437 +TD+ FIL Sbjct: 420 DGIAGDTDLSRFIL 433 >gi|154251693|ref|YP_001412517.1| ATP-dependent protease ATP-binding subunit HslU [Parvibaculum lavamentivorans DS-1] gi|171769575|sp|A7HSH7|HSLU_PARL1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|154155643|gb|ABS62860.1| heat shock protein HslVU, ATPase subunit HslU [Parvibaculum lavamentivorans DS-1] Length = 435 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 268/434 (61%), Positives = 351/434 (80%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQLP LRDE++PKNIL++GPTGVG Sbjct: 3 SFSPREIVSELDRYIVGQRDAKRAVAIALRNRWRRQQLPDALRDEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV++A+ + RE +R +V+ + Sbjct: 63 KTEISRRLAKLAEAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIALAMTRERKRKDVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AE R+LDALVG A+ TRE FR+KLRDGE+ +KEI++EVAD+ + FDIPG Sbjct: 123 AHVAAEGRVLDALVGANASEATRESFRRKLRDGELDEKEIEVEVADSGGGMPTFDIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NLS++ K G GR K RM+V+ Y L+ +ESD+L+D + + +++I+ VEN Sbjct: 183 GSQMGMINLSDIMGKAFG-GRTKTRRMAVRDSYDVLVAEESDKLLDQEQLTQEAIRSVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR G VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKICARAERQGGDVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L+K D R +LT+ E++LI QY L+ TE + LDFT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELQALSKDDMRRVLTEPEASLIKQYVALLNTENVTLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D IDA+AD+A ++NSTV +IGARRL TVMERVL+++SF+A+D +TV ID YVR H+ Sbjct: 362 DDGIDAIADIATSVNSTVENIGARRLHTVMERVLDEVSFAATDKAGETVTIDGAYVRKHL 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLSKNTDLSKFIL 435 >gi|319405092|emb|CBI78696.1| heat shock protein [Bartonella sp. AR 15-3] Length = 435 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/434 (62%), Positives = 352/434 (81%), Gaps = 6/434 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A Sbjct: 65 TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 INAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV D S+ FDIPG G Sbjct: 125 HINAEERVLDALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184 Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 A +GI+NLS+LF K+ G + KIR +V+ + L+ DES++L+D D + ++++++ EN Sbjct: 185 AQMGIMNLSDLFGKM---GVRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI RD G VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA Sbjct: 242 DGIVFIDEIDKIATRDGGATATVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TE + L+ T Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA+YVR I Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421 Query: 424 GDFPSETDMYHFIL 437 G+ S+ D+ F+L Sbjct: 422 GELASDIDLSRFVL 435 >gi|319408004|emb|CBI81658.1| heat shock protein [Bartonella schoenbuchensis R1] Length = 436 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/435 (62%), Positives = 355/435 (81%), Gaps = 7/435 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ+DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A Sbjct: 65 TGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183 +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ +KEI+IEVAD SS+ FDIPG Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNSSNGTPTFDIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +GI++LS++F K+ G + KIR +V+ + L+ DES++L+D D + ++++++ E Sbjct: 185 GAQMGIMSLSDIFGKM---GTRTKIRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVF+DE DKI RD G G VSREGVQRDLLPLVEG++V+TKYG I TDHILFIASG Sbjct: 242 NDGIVFIDEIDKIATRDGGAGATVSREGVQRDLLPLVEGTTVATKYGQIKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TE + L+ Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA YV+ Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDAAYVKQS 421 Query: 423 IGDFPSETDMYHFIL 437 IGD ++ D+ FIL Sbjct: 422 IGDLAADVDLSRFIL 436 >gi|240849874|ref|YP_002971262.1| heat shock protein HslU [Bartonella grahamii as4aup] gi|240266997|gb|ACS50585.1| heat shock protein HslU [Bartonella grahamii as4aup] Length = 436 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 275/434 (63%), Positives = 353/434 (81%), Gaps = 5/434 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDE++E+A Sbjct: 65 TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEIKEKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183 +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ +KEI+IEVAD +S+ S FDIPG Sbjct: 125 HVNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +GI+NLS++ K MGS R K + +V+ + L+ DES++L+D D + ++++++ EN Sbjct: 185 GAQMGIMNLSDILGK-MGS-RTKVRKTTVRDAFKPLIDDESEKLLDQDQIIQEALRVAEN 242 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI RD G VSREGVQRDLLPLVEG++VSTKYG I TDHILFIASGA Sbjct: 243 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTVSTKYGQIKTDHILFIASGA 302 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L L + D R ILT+ E++LI QY LM TE + L+ T Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 362 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + IDA YVR I Sbjct: 363 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFTIDAAYVRKSI 422 Query: 424 GDFPSETDMYHFIL 437 G+ ++ D+ FIL Sbjct: 423 GELAADIDLSRFIL 436 >gi|319898329|ref|YP_004158422.1| heat shock protein [Bartonella clarridgeiae 73] gi|319402293|emb|CBI75832.1| heat shock protein [Bartonella clarridgeiae 73] Length = 435 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/438 (62%), Positives = 353/438 (80%), Gaps = 6/438 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPT Sbjct: 1 MCIVFSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RD V Sbjct: 61 GVGKTGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDGV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 + +A INAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV D S+ FDIP Sbjct: 121 KAKAHINAEERVLDALVGKTASPVTRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIP 180 Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 G GA +GI+NLS++F K+ G + KIR +V+ + L+ DES++L+D D + +++++ Sbjct: 181 GMPGAQMGIMNLSDIFGKM---GIRTKIRKATVRDAFKPLIDDESEKLLDQDQIIQEALR 237 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 + EN GIVF+DE DKI RD G G VSREGVQRDLLPLVEG++++TKYG I TDHILFI Sbjct: 238 VAENDGIVFIDEIDKIATRDGGAGAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFI 297 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TE + Sbjct: 298 ASGAFHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYVALMATEEVH 357 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+ T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA+YV Sbjct: 358 LEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYV 417 Query: 420 RLHIGDFPSETDMYHFIL 437 R IG+ S+ D+ FIL Sbjct: 418 RKSIGELASDIDLSRFIL 435 >gi|319406537|emb|CBI80179.1| heat shock protein [Bartonella sp. 1-1C] Length = 435 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/434 (62%), Positives = 352/434 (81%), Gaps = 6/434 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A Sbjct: 65 TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 +NAEER+L+ALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV D S+ FDIPG G Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184 Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 A +GI+NLS++F K+ G + K+R +V+ + L+ DES++L+D D + ++++++ EN Sbjct: 185 AQMGIMNLSDIFGKM---GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI RD G VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA Sbjct: 242 DGIVFIDEIDKIATRDGGATAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TE + L+ T Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA+YVR I Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421 Query: 424 GDFPSETDMYHFIL 437 GD S+ D+ F+L Sbjct: 422 GDLASDIDLSRFVL 435 >gi|319403621|emb|CBI77206.1| heat shock protein [Bartonella rochalimae ATCC BAA-1498] Length = 435 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/434 (61%), Positives = 352/434 (81%), Gaps = 6/434 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+ +A Sbjct: 65 TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVKAKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 +NAEER+L+ALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV D S+ FDIPG G Sbjct: 125 HLNAEERVLNALVGKTASPATRDSFRKKLREGELDDKEIEIEVTDNSNSAPTFDIPGMPG 184 Query: 185 ASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 A +GI+NLS++F K+ G + K+R +V+ + L+ DES++L+D D + ++++++ EN Sbjct: 185 AQMGIMNLSDIFGKM---GVRTKVRKTTVKDAFKPLIDDESEKLLDQDQIIQEALRVAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI RD G VSREGVQRDLLPLVEG++++TKYG I TDHILFIASGA Sbjct: 242 DGIVFIDEIDKIATRDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TE + L+ T Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTREDLRRILTEPEASLIKQYIALMATEEVHLEIT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA+YVR I Sbjct: 362 DDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDADYVRKSI 421 Query: 424 GDFPSETDMYHFIL 437 G+ S+ D+ F+L Sbjct: 422 GELASDIDLSRFVL 435 >gi|49473863|ref|YP_031905.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana str. Toulouse] gi|62286804|sp|Q6G0P9|HSLU_BARQU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|49239366|emb|CAF25699.1| Heat shock protein hslU [Bartonella quintana str. Toulouse] Length = 436 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 277/438 (63%), Positives = 353/438 (80%), Gaps = 5/438 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + FSPREIVSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPT Sbjct: 1 MCIVFSPREIVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDGPMREEVMPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV Sbjct: 61 GVGKTGIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDI 181 + +A INAEER+LDALVGKTA+ TR+ FRKKLR+GE+ +KEI+IEVAD +S+ S FDI Sbjct: 121 KVKAHINAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDI 180 Query: 182 PG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 PG GA +GI+NLSE+F K MGS R K + +V+ + L+ DES++L+D D + +++++ Sbjct: 181 PGMPGAQMGIMNLSEIFGK-MGS-RIKVRKTTVKDSFKPLIDDESEKLLDQDQIIQEALR 238 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 + EN GIVF+DE DKI RD VSREGVQRDLLPLVEG++++TKYG I TDHILFI Sbjct: 239 VAENDGIVFIDEIDKIATRDGAVSAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFI 298 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFHVS+P+DLLPE+QGR P+RV L L + D R ILT+ E++LI QY LM E + Sbjct: 299 ASGAFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMAMEEVR 358 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+ T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + IDA YV Sbjct: 359 LEITDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYV 418 Query: 420 RLHIGDFPSETDMYHFIL 437 R IGD ++ D+ FIL Sbjct: 419 RQSIGDLAADLDLSRFIL 436 >gi|121602788|ref|YP_989509.1| ATP-dependent protease ATP-binding subunit [Bartonella bacilliformis KC583] gi|166221461|sp|A1UU56|HSLU_BARBK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120614965|gb|ABM45566.1| heat shock protein HslVU, ATPase subunit HslU [Bartonella bacilliformis KC583] Length = 436 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/434 (62%), Positives = 353/434 (81%), Gaps = 5/434 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+IIGQ+DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPREIVSELDRFIIGQKDAKRSVAIALRNRWRRQQLEGQIREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI++VRE +RDEV+E+A Sbjct: 65 TEIARRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAISLVREKKRDEVQERA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-- 183 INAEER+L+ALVGKTA+ TR+ FR+KLR GE+ DKEI+IEVA+ S++ + FDIPG Sbjct: 125 HINAEERVLEALVGKTASPATRDNFRQKLRAGELDDKEIEIEVANNSNNSAPTFDIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +GI+NLS++F K+ GR K + +V+ + L+ DES++L+D D + ++++ + EN Sbjct: 185 GAQMGIMNLSDIFGKI--GGRTKIRKTTVKDAFKPLIDDESEKLLDQDQIIQEALCITEN 242 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI +D G G +SREGVQRDLLPLVEG+ V+TKYG I TDHILFIASGA Sbjct: 243 DGIVFIDEIDKIATQDGGAGAAISREGVQRDLLPLVEGTIVATKYGQIKTDHILFIASGA 302 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L K D R ILT+ E++LI QY LM TE + L+ T Sbjct: 303 FHVSKPSDLLPELQGRLPIRVELNALTKEDLRRILTEPEASLIKQYIALMATEDVHLEIT 362 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+ID LAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + +DA YVR + Sbjct: 363 DDAIDTLADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKVDATYVRQSV 422 Query: 424 GDFPSETDMYHFIL 437 G+ S+ D+ FIL Sbjct: 423 GELASDVDLSRFIL 436 >gi|163867504|ref|YP_001608703.1| ATP-dependent protease ATP-binding subunit HslU [Bartonella tribocorum CIP 105476] gi|189043904|sp|A9IMR3|HSLU_BART1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|161017150|emb|CAK00708.1| heat shock protein [Bartonella tribocorum CIP 105476] Length = 436 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 268/435 (61%), Positives = 353/435 (81%), Gaps = 7/435 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPRE VSELDR+IIGQ DAKR+VAIALRNRWRRQQL +R+E+MPKNIL++GPTGVGK Sbjct: 5 FSPRETVSELDRFIIGQNDAKRSVAIALRNRWRRQQLDEPMREEVMPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TKFTE+GYVGR+VEQIIRDLV++A+++VRE +RDE++E+A Sbjct: 65 TGIARRLAKLSGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAVSLVREKKRDEIKEKA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183 +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ +KEI+IEVAD +S+ S FDIPG Sbjct: 125 HMNAEERVLDALVGKTASPATRDSFRKKLREGELDEKEIEIEVADNNSNSASTFDIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +GI+NLS++ K+ G + K+R +V+ + L+ DES++L+D + + ++++++ E Sbjct: 185 GAQMGIMNLSDILGKM---GNRTKVRKTTVRDAFKPLIDDESEKLLDQEQIIQEALRVAE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVF+DE DKI +D G VSREGVQRDLLPLVEG++++TKYG I TDHILFIASG Sbjct: 242 NDGIVFIDEIDKIATKDGGASAAVSREGVQRDLLPLVEGTTIATKYGQIKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L L + D R ILT+ E++LI QY LM TE + L+ Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELNPLTREDLRRILTEPEASLIKQYIALMATEEVHLEI 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+IDALAD+AV+LN+ + +IGARRLQTVMERVL++ISF+A D + IDA YVR Sbjct: 362 TDDAIDALADIAVDLNARIENIGARRLQTVMERVLDEISFTAPDKAGTSFKIDAAYVRKS 421 Query: 423 IGDFPSETDMYHFIL 437 IG+ ++ D+ FIL Sbjct: 422 IGELAADIDLSRFIL 436 >gi|209883547|ref|YP_002287404.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha carboxidovorans OM5] gi|209871743|gb|ACI91539.1| heat shock protein HslVU, ATPase subunit HslU [Oligotropha carboxidovorans OM5] Length = 436 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 272/439 (61%), Positives = 349/439 (79%), Gaps = 5/439 (1%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++G Sbjct: 1 MKPMTDFSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRLQLEGGLREEVLPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQI+RDLVDVAI RE +R Sbjct: 61 PTGVGKTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRK 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 +VR +A + AEER+LDALVG A+S TRE FR++LRDGE++DKEI++E S F+ Sbjct: 121 DVRARAQLAAEERVLDALVGANASSGTRESFRRRLRDGELNDKEIEVET-QAGGGPSMFE 179 Query: 181 IPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 IPG GA +G ++L ++F K MG GR K R++V+ + L+ +ESD+L+D + + RD+I Sbjct: 180 IPGMPGAQMGAISLGDIFGK-MG-GRTKTRRLTVEDSHEVLVNEESDKLLDDEALTRDAI 237 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 +VEN GIVFLDE DKI RD VSREGVQRDLLPL+EG++VSTK+G + TDHILF Sbjct: 238 HVVENNGIVFLDEVDKICVRDGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILF 297 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E +LI QY LMKTEG+ Sbjct: 298 IASGAFHIAKPSDLLPELQGRLPIRVELQALTRDDLRRILTEPEGSLIKQYIALMKTEGV 357 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L+ T+++IDALADVAV++NS+V +IGARRLQTVMERVL+++SF A D+ +T+ IDA Y Sbjct: 358 TLEITDEAIDALADVAVSVNSSVENIGARRLQTVMERVLDEVSFHAPDMNGQTITIDAAY 417 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ HIGD TD+ FIL Sbjct: 418 VQKHIGDLAKNTDLSRFIL 436 >gi|288959726|ref|YP_003450067.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp. B510] gi|288912034|dbj|BAI73523.1| ATP-dependent HslUV protease ATP-binding subunit [Azospirillum sp. B510] Length = 446 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 272/438 (62%), Positives = 345/438 (78%), Gaps = 5/438 (1%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP LR+E++PKNIL++GPTG Sbjct: 10 TAAFSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRQQLPDGLREEVLPKNILMIGPTG 69 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ AI + RE R EV Sbjct: 70 VGKTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAIGLTRERLRKEVA 129 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDI 181 +A + AEER+LDAL G +A++ TR FRK LR+G ++DKEI+I+VADT + + FDI Sbjct: 130 AKAELRAEERVLDALCGDSASAETRAKFRKMLREGTLNDKEIEIQVADTGAPAGMPTFDI 189 Query: 182 PG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 PG G +G+LNL+++F K+MG GR K RM+V + + LM +ESD+L+D + V ++I+ Sbjct: 190 PGVPGGQMGMLNLNDMFGKMMG-GRTKTRRMTVSESHGVLMAEESDKLLDQEKVVAEAIR 248 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 VE GIVFLDE DKI AR G VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFI Sbjct: 249 AVEQNGIVFLDEIDKISARSDARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFI 308 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFHV++P+DLLPE+QGR P+RV LK+L++ DF+ ILT+ E++LI QYK LMKTE + Sbjct: 309 ASGAFHVAKPSDLLPELQGRLPIRVELKALSQDDFKRILTEPEASLIRQYKALMKTEEVD 368 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L FT+DSID LA +A +NS+V +IGARRL TV+ER+LE+ISF+ASD +TV IDA V Sbjct: 369 LVFTDDSIDELARLAAEINSSVENIGARRLHTVLERLLEEISFAASDRAGETVTIDAALV 428 Query: 420 RLHIGDFPSETDMYHFIL 437 R +G D+ FIL Sbjct: 429 RERVGGLAKNADLSKFIL 446 >gi|328545935|ref|YP_004306044.1| ATP-dependent protease ATPase HslU [polymorphum gilvum SL003B-26A1] gi|326415675|gb|ADZ72738.1| ATP-dependent protease ATPase subunit HslU [Polymorphum gilvum SL003B-26A1] Length = 434 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/434 (61%), Positives = 350/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL + +R+E++PKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLESPMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ I++VRE+RR EV+ + Sbjct: 63 KTEISRRLARLANAPFVKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREARRQEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG +A+ TR+ FR+KLRDG++ KEI+IEV + +F++PG Sbjct: 123 AHVLAEERVLDALVGASASPATRDSFRRKLRDGDLDAKEIEIEVR-AQPQMPSFELPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASVG++N+SEL K GS + + R+ V+ Y L+ +ESD+L+D + + +++I +VEN Sbjct: 182 GASVGVMNVSELLGKAFGSHTRTR-RVLVKDSYEILINEESDKLLDEEKIVQEAIALVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASGA Sbjct: 241 AGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV LK L + DFR ILT+ E++LI QY L+KTEG+ L+FT Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELKPLTRDDFRSILTEPEASLIKQYVALLKTEGVALEFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+ID +A +AV+LN+TV +IGARRLQTVMER+L+++SF+A D +TV IDA YVR ++ Sbjct: 361 DDAIDEIATIAVDLNATVENIGARRLQTVMERILDEVSFTAPDHDGRTVTIDAAYVRDNV 420 Query: 424 GDFPSETDMYHFIL 437 G+ D+ FIL Sbjct: 421 GELAKNIDLSRFIL 434 >gi|154246238|ref|YP_001417196.1| ATP-dependent protease ATP-binding subunit HslU [Xanthobacter autotrophicus Py2] gi|238686721|sp|A7IHP6|HSLU_XANP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|154160323|gb|ABS67539.1| heat shock protein HslVU, ATPase subunit HslU [Xanthobacter autotrophicus Py2] Length = 435 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/434 (61%), Positives = 343/434 (79%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ +AKRAVAIALRNRWRRQQL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRHIVGQANAKRAVAIALRNRWRRQQLDDKLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE+RR +V+ + Sbjct: 63 KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREARRKDVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AE R+LDALVG TA+ TR+ FRK+LR GE+ DKE++IEV + F+IPG Sbjct: 123 AHLAAENRVLDALVGATASPATRDAFRKRLRAGELDDKEVEIEVQAGGQGMPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G +NL ++ K G GR K R++V++ +P L+ +E+D+LID D + +D+I VEN Sbjct: 183 GTQMGAVNLGDMLGKAFG-GRSKPRRVNVKEAHPLLLAEEADKLIDQDAIVQDAIHQVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ +G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKIAGREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++L ++DF ILT+TE++L+ Q LM TEG+ L T Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLTIT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 D+++A+AD AV +NS V +IGARRLQTV+ERVL+D+SFSA D +TVV+DAEYVR + Sbjct: 362 TDAVEAIADAAVEVNSNVENIGARRLQTVIERVLDDLSFSAPDRSGETVVVDAEYVRSRV 421 Query: 424 GDFPSETDMYHFIL 437 D D+ FIL Sbjct: 422 ADLARNADLSRFIL 435 >gi|27375757|ref|NP_767286.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium japonicum USDA 110] gi|32129623|sp|Q89WN2|HSLU_BRAJA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|27348895|dbj|BAC45911.1| heat shock chaperone [Bradyrhizobium japonicum USDA 110] Length = 434 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/434 (61%), Positives = 348/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLEGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIAQVRERKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+S TRE FRKKLR GE++DKEI+IE + + F+IPG Sbjct: 123 AQLAAEERVLDALVGANASSATRESFRKKLRAGELNDKEIEIETQSSGGGMPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G +++ ++F K+ GR K R++V+ + L+ +ESD+L+D + + ++I VEN Sbjct: 183 GAQMGAISIGDIFGKL--GGRSKTRRLTVESSHEILINEESDKLLDTEQLTLEAISAVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 241 NGIVFLDEIDKICARDGRVGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY LM+TEG+ LD T Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMQTEGVTLDIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +++IDALADVAV +NSTV +IGARRLQTVMERVL++ISF+A D +T+ +DA++V+ H+ Sbjct: 361 DNAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFTAPDRNGETIRVDADFVQKHV 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNADLSRFIL 434 >gi|307942727|ref|ZP_07658072.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp. TrichSKD4] gi|307773523|gb|EFO32739.1| ATP-dependent protease HslVU, ATPase subunit [Roseibium sp. TrichSKD4] Length = 434 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/434 (60%), Positives = 350/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL +R+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+ I++VR S+R+ V+ + Sbjct: 63 KTEIARRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRSSKREAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+ +TR+ FRKKLR+GE+ DKEI++EV + + +FD+PG Sbjct: 123 AHVLAEERVLDALVGSNASPSTRDSFRKKLREGELDDKEIEVEVR-AQAQMPSFDLPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASVG++N+S+L K G G+ K R +V + Y L+ +ESD+L+D D + +++ +VEN Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRTTVSESYDLLINEESDKLLDEDKIVSEAVSLVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR++ +G VSREGVQRDLLPL+EG+ VSTK+G + TDHILF+ASGA Sbjct: 241 SGIVFLDEIDKICAREARSGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFVASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY LMKTE + L FT Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMKTEDLTLTFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 E++ID +A VAV+LN++V +IGARRLQTVMER+L++ISF+A D +T+ I A++VR +I Sbjct: 361 EEAIDEIAQVAVDLNASVENIGARRLQTVMERILDEISFNAPDKSGETIEITADHVRENI 420 Query: 424 GDFPSETDMYHFIL 437 G+ D+ FIL Sbjct: 421 GELSKNVDLSKFIL 434 >gi|146337375|ref|YP_001202423.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp. ORS278] gi|166221463|sp|A4YJU7|HSLU_BRASO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|146190181|emb|CAL74173.1| ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein [Bradyrhizobium sp. ORS278] Length = 434 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/434 (61%), Positives = 351/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVSIALRNRWRRLQLDTGLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIHQVRERKRKDVAAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG +++ TR+ FR+KLR GE++DKEI+IE + + F+IPG Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGMPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G +++ ++F K+ GR K R++V+ + L+ +ESD+L+D D + +++I +VEN Sbjct: 183 GAQMGAISIGDIFGKL--GGRTKTRRVTVEASHDILIAEESDKLLDSDQLVQEAINVVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R++ +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 241 NGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY LMKTEG+ LD T Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF+ASD +T+ +DA YV+ HI Sbjct: 361 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFTASDRTGETMRVDAAYVQQHI 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNADLSRFIL 434 >gi|148251770|ref|YP_001236355.1| ATP-dependent protease ATP-binding subunit HslU [Bradyrhizobium sp. BTAi1] gi|166221462|sp|A5E8F5|HSLU_BRASB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|146403943|gb|ABQ32449.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Bradyrhizobium sp. BTAi1] Length = 434 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/434 (61%), Positives = 350/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ DAKRAV+IALRNRWRR QL A LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRYIVGQADAKRAVSIALRNRWRRLQLDAGLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIVQVRERKRKDVAAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG +++ TR+ FR+KLR GE++DKEI+IE + F+IPG Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRRKLRAGELNDKEIEIETQSSGGGFPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G +++ ++F K+ GR K R++V+ + L+ +ESD+L+D D + +++I +VEN Sbjct: 183 GAQMGAISIGDIFGKL--GGRTKTRRVTVESSHDILIAEESDKLLDNDQLVQEAISVVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R++ +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 241 NGIVFLDEIDKICVRENRHGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ E++LI QY LMKTEG+ LD T Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELQALTRDDMRRILTEPEASLIKQYVALMKTEGVTLDIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV +NSTV +IGARRLQTVMERVL++ISF+ASD +T+ +DA YV+ HI Sbjct: 361 DDAIDALADIAVAVNSTVENIGARRLQTVMERVLDEISFTASDRSGETMRVDAAYVQQHI 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNADLSRFIL 434 >gi|298293772|ref|YP_003695711.1| heat shock protein HslVU, ATPase HslU [Starkeya novella DSM 506] gi|296930283|gb|ADH91092.1| heat shock protein HslVU, ATPase subunit HslU [Starkeya novella DSM 506] Length = 436 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/435 (60%), Positives = 343/435 (78%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ AKRAVAIALRNRWRRQQL LR+E++PKNIL++GPTGVG Sbjct: 3 SFSPREIVSELDRFIVGQHKAKRAVAIALRNRWRRQQLEGQLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I +VRE RR V + Sbjct: 63 KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLVREVRRKGVEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A + AEER+LDALVG TA++ TRE FRKKLRDG + DKE++IEVA + + F+IPG Sbjct: 123 AHLAAEERVLDALVGTTASAGTRESFRKKLRDGLLDDKEVEIEVASSGGQGMPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +G +++ ++ K G GR K R++V+ +P LM +E+D+LID D + +++I+ VE Sbjct: 183 PGAQMGAISIGDMLGKAFG-GRSKPRRVTVKDAHPLLMSEEADKLIDQDAIVQEAIRAVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DKI D G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 ENGIVFLDEIDKIAGSDRRGGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L++L + DF+ ILT+TE++L+ Q LM TEG+ L Sbjct: 302 AFHVSKPSDLLPELQGRLPIRVELEALTREDFKRILTETEASLVKQSVALMGTEGVELSI 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED+++A+AD+AV +N++V +IGARRLQTV+ERVL+D+SF+A D +T+VID YVR Sbjct: 362 TEDAVEAIADIAVQVNASVENIGARRLQTVIERVLDDLSFNAPDRSGETIVIDGAYVRER 421 Query: 423 IGDFPSETDMYHFIL 437 + D TD+ +IL Sbjct: 422 VADLAGNTDLSRYIL 436 >gi|92115752|ref|YP_575481.1| ATP-dependent protease ATP-binding subunit HslU [Nitrobacter hamburgensis X14] gi|123387265|sp|Q1QRX6|HSLU_NITHX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91798646|gb|ABE61021.1| heat shock protein HslVU, ATPase subunit HslU [Nitrobacter hamburgensis X14] Length = 433 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/434 (62%), Positives = 347/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL +R+E++PKNIL++GPTGVG Sbjct: 3 HFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+VAI RE +R +V+ + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A++ TR+ FR+KLR G+++DKEI+IE +S F+IPG Sbjct: 123 AQLAAEERVLDALVGANASAATRDSFRRKLRAGDLNDKEIEIET-QSSGGAPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA VG +++ ++F K MG GR K R++V Y L+ +ESD+L+D D + +++I VEN Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVVDSYEILVNEESDKLLDSDQLTQEAIAAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY LM+TEG+ LD T Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYVALMQTEGVTLDIT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALAD+AV +NSTV +IGARRLQTVMERVL+DISFSA D +TV IDA YV+ HI Sbjct: 360 DDAIDALADIAVAVNSTVENIGARRLQTVMERVLDDISFSAPDRNGETVRIDAGYVQKHI 419 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 420 GDLAKNADLSRFIL 433 >gi|312114749|ref|YP_004012345.1| heat shock protein HslVU, ATPase HslU [Rhodomicrobium vannielii ATCC 17100] gi|311219878|gb|ADP71246.1| heat shock protein HslVU, ATPase subunit HslU [Rhodomicrobium vannielii ATCC 17100] Length = 437 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 341/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+I+GQ AKRAVAIALRNRWRRQQL D+R+E++PKNIL++GPTGVG Sbjct: 5 NFSPREIVSELDRHIVGQHAAKRAVAIALRNRWRRQQLKDDMREEVLPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+V+QIIRDLV+ AI +VRE++R EVR + Sbjct: 65 KTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVDQIIRDLVESAIGLVRETKRKEVRAK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+L ALVG+ A+ T++ FRKKLRDGE+ +KEI+++VADT + F+IPG Sbjct: 125 AHLLAEERVLMALVGQHASPATKDAFRKKLRDGELDEKEIEVQVADTGGGVGGFEIPGMP 184 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+SV ++NL+++ K G R K R+SV+ Y L+ DESD+L+D + V +D+I VE Sbjct: 185 GSSVSMMNLNDVLGKAFGQ-RTKTRRLSVRDSYEVLINDESDKLLDNEAVVQDAITAVEE 243 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA Sbjct: 244 NGIVFLDEIDKITARSERLGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 303 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+D+LPE+QGR P+RV L++L DFR IL + +S+LI Q LM TEG+ L+F+ Sbjct: 304 FHVAKPSDMLPELQGRLPIRVELQALTGDDFRRILREPKSSLIKQSVALMATEGVELEFS 363 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDA+ADVAV +N+ V +IGARRL TVMERVL++ISF A+D VIDA YV+ + Sbjct: 364 EDAIDAIADVAVEVNANVENIGARRLSTVMERVLDEISFEAADKARTKFVIDATYVKTQV 423 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 424 GDLAKNADLSKFIL 437 >gi|254470703|ref|ZP_05084106.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp. JE062] gi|211959845|gb|EEA95042.1| heat shock protein HslVU, ATPase subunit HslU [Pseudovibrio sp. JE062] Length = 434 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 344/434 (79%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL +LR+E+ PKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDEELREEVQPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQIIRDLV+ AI +VRE R +V + Sbjct: 63 KTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIIRDLVESAIALVREQSRKDVEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+ TR+ FRKKLR+G++ ++EI+IEV + + +FDIPG Sbjct: 123 AHVLAEERVLDALVGANASPATRDTFRKKLREGDLDEREIEIEVR-ANPQMPSFDIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+SVG++N+S++ K G G+ K R +V+ + L+ +ESD+L+D + + +++I +VEN Sbjct: 182 GSSVGVMNISDMLGKAFG-GQTKPKRTNVKDSHKVLLAEESDKLLDEEKIVQEAIALVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI A+D NG VSREGVQRDLLPL+EG+ VSTK+G + TDH+LFIASGA Sbjct: 241 SGIVFLDEIDKICAKDGRNGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHVLFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV LK+L K DF ILTDTE++LI QY LM TE + ++FT Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELKALTKEDFVKILTDTEASLIKQYVALMGTESVTIEFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+ID +A +AV+LN+TV +IGARRLQTVMERVL++ISF+A D + V IDA YV+ ++ Sbjct: 361 DDAIDEIATIAVDLNATVENIGARRLQTVMERVLDEISFAAPDKSGEQVTIDAAYVKSNV 420 Query: 424 GDFPSETDMYHFIL 437 + D+ FIL Sbjct: 421 SELAKNVDLSQFIL 434 >gi|209966551|ref|YP_002299466.1| heat shock protein HslVU, ATPase subunit HslU, putative [Rhodospirillum centenum SW] gi|238065802|sp|B6IWI0|HSLU_RHOCS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|209960017|gb|ACJ00654.1| heat shock protein HslVU, ATPase subunit HslU, putative [Rhodospirillum centenum SW] Length = 437 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/436 (61%), Positives = 346/436 (79%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRRQQLP LR+E++PKNIL++GPTGVG Sbjct: 3 SFSPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLPEGLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDLV++AI + RE R EV + Sbjct: 63 KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIIRDLVEIAIGLTRERLRKEVASK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183 A + AE+R+L+ALVG A+ TR+ FRK LR+G+++D+EI+I+V DTS + FD+PG Sbjct: 123 AELRAEDRVLEALVGANASGETRQKFRKMLREGQLNDREIEIQVQDTSVQGLPTFDVPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +G++NL ++F K +G GR K RMSV + Y LM +ESD+L+D + V ++IQ VE Sbjct: 183 PGAQMGMINLGDIFGKALG-GRTKVRRMSVSESYDVLMAEESDKLLDQEKVVSEAIQSVE 241 Query: 243 NYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 GIVFLDE DKI AR + G VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIAS Sbjct: 242 QNGIVFLDEIDKITARSEVRGGADVSREGVQRDLLPLIEGTTVNTKHGPVKTDHVLFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV LK+L++ DFR ILT+ E++LI QYK L+ TEG+ LD Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELKALSQEDFRRILTEPEASLIKQYKALLATEGMTLD 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT+D ID LA +A ++N +V +IGARRL TV+ER+LE+ISF+ASD ++V IDA YVR Sbjct: 362 FTDDGIDELARLAADINRSVENIGARRLHTVLERLLEEISFTASDRSGESVTIDAAYVRG 421 Query: 422 HIGDFPSETDMYHFIL 437 + TD+ FIL Sbjct: 422 QLQGLAQNTDLSKFIL 437 >gi|75674328|ref|YP_316749.1| ATP-dependent protease ATP-binding subunit [Nitrobacter winogradskyi Nb-255] gi|123759422|sp|Q3SWE4|HSLU_NITWN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|74419198|gb|ABA03397.1| Heat shock protein HslU [Nitrobacter winogradskyi Nb-255] Length = 433 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL LR+E++PKNIL++GPTGVG Sbjct: 3 DISPREIVSELDRFIVGQADAKRAVSIALRNRWRRQQLTGPLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+K+E TKFTE+GYVGR+VEQI+RD+V+VAIN RE +R +V+ + Sbjct: 63 KTEIARRLAKLANAPFLKIEATKFTEVGYVGRDVEQIVRDIVEVAINQTRERKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A++ TR+ FRK+LR GE++DKEI+IE TS F+IPG Sbjct: 123 AQLAAEERVLDALVGANASAATRDSFRKRLRSGELNDKEIEIET-QTSGGGPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA VG +++ ++F K MG GR K R++V Y L+ +ESD+L+D D + +++I VEN Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVSDSYEILINEESDKLLDSDQLTQEAIAAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY LM TEG++LDFT Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRDDLRRILTEPEASLIKQYVALMDTEGVVLDFT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D +TV IDA YV+ +I Sbjct: 360 DDAVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRNGETVRIDAGYVQKNI 419 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 420 GDLAKNADLSRFIL 433 >gi|254504755|ref|ZP_05116906.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii DFL-11] gi|222440826|gb|EEE47505.1| heat shock protein HslVU, ATPase subunit HslU [Labrenzia alexandrii DFL-11] Length = 434 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 344/434 (79%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL +R+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLEGQMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+ I++VRE +R+ V+ + Sbjct: 63 KTEISRRLAKLARAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVREEKRESVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+ TRE FR KLRDG++ DKEI++EV + + +FD+PG Sbjct: 123 AHVLAEERVLDALVGANASPATRESFRTKLRDGDMDDKEIEVEVP-AQAQMPSFDLPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASVG++N+S+L K G G+ K R++V+ + L+ ESD+L+D D + ++I +VEN Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRINVRDSHQLLVNAESDKLLDEDKIVEEAISLVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA Sbjct: 241 SGIVFLDEIDKICAREGRAGGDVSREGVQRDLLPLIEGTVVSTKHGPVRTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DFR ILT+ E++LI QY LM+TEG+ L FT Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKEDFRAILTEPEASLIKQYVALMETEGLKLSFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 EDSI+ +A VAV+LN +V +IGARRLQTVMER+L++ISF+A D + V I AE+V +I Sbjct: 361 EDSIEEIASVAVDLNGSVENIGARRLQTVMERILDEISFTAPDRSGEEVEITAEFVHDNI 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNVDLSKFIL 434 >gi|90421826|ref|YP_530196.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris BisB18] gi|123275695|sp|Q21CK9|HSLU_RHOPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|90103840|gb|ABD85877.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris BisB18] Length = 434 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 264/434 (60%), Positives = 347/434 (79%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQHDAKRAVSIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI+ VRE +R +V + Sbjct: 63 KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAISQVREKKRKDVEAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AEER+LDALVG +++ TR+ FRKKLR GE++DKEI++E T F+IPG Sbjct: 123 AQIAAEERVLDALVGANSSATTRDSFRKKLRAGELNDKEIEVETQSTGGGSPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR K R++V+ + L+ +E+D+L+D D + +++I VEN Sbjct: 183 GAQMGAISLGDIFGK-MG-GRTKTRRLTVEDSHELLVNEEADKLLDSDQLVQEAINAVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 241 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY L++TEG+ L+ T Sbjct: 301 FHIAKPSDLLPELQGRLPIRVELSALTRDDMRRILTEPEASLIKQYVALLQTEGVTLEIT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +++IDALADVAV +NS+V +IGARRLQTVMERVL++ISF+A D +T+ +DA YV+ H+ Sbjct: 361 DEAIDALADVAVAVNSSVENIGARRLQTVMERVLDEISFTAPDRDGETIQVDAAYVQKHV 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNADLSRFIL 434 >gi|323138813|ref|ZP_08073877.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp. ATCC 49242] gi|322395961|gb|EFX98498.1| heat shock protein HslVU, ATPase subunit HslU [Methylocystis sp. ATCC 49242] Length = 434 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 260/434 (59%), Positives = 342/434 (78%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ +AKRAVAIALRNRWRR QL +R+E++PKNIL++GPTG G Sbjct: 3 DFSPREIVSELDRYIVGQNEAKRAVAIALRNRWRRLQLEGQMREEVLPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDL++VA+ +V+E RR +V+ + Sbjct: 63 KTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLIEVALVMVKERRRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+LDALVG ++ TRE FRK+LRDGE+ DKEI+IE+A + F++P Sbjct: 123 AQQAAEERVLDALVGPASSPATRETFRKRLRDGELDDKEIEIELAQSGGSTPMFELPNMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASV +L ++F K + G+ +K ++V++ + L+ +ESD+LID + R++I VEN Sbjct: 183 GASVSAFSLGDIFGKALQRGKPRK--LTVKEAHDPLVAEESDKLIDQEASVREAIHEVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ +G VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA Sbjct: 241 NGIVFIDEMDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L SLN+ DFR ILT+TE+ L QY LM TEG+ L+F+ Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELASLNEEDFRRILTETEACLTKQYVALMGTEGVTLEFS 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +I+A+A VAV +N++V +IGARRLQTVMERVL+DISFSASD +TVV+D +YV HI Sbjct: 361 PSAIEAIAKVAVQVNTSVENIGARRLQTVMERVLDDISFSASDRAGETVVVDGDYVERHI 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNRDLSRFIL 434 >gi|158421845|ref|YP_001523137.1| ATP-dependent protease ATP-binding subunit HslU [Azorhizobium caulinodans ORS 571] gi|172048021|sp|A8IIZ0|HSLU_AZOC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|158328734|dbj|BAF86219.1| heat shock protein [Azorhizobium caulinodans ORS 571] Length = 435 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/434 (60%), Positives = 342/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ AKRAVAIALRNRWRRQQL +R+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRHIVGQGKAKRAVAIALRNRWRRQQLQGHMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R +V+ + Sbjct: 63 KTEISRRLARLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREQKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG ++S TR+ FRKKLR GE+ +KE++IEV + + F+IPG Sbjct: 123 AHLAAEERVLDALVGANSSSTTRDAFRKKLRAGELDEKEVEIEVQAGAQGMPMFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++ K G GR K R+ V+ +P L+ +E+D+LID + +++I VEN Sbjct: 183 GAQMGAVSLGDMLGKAFG-GRTKARRVLVKDAHPLLLTEEADKLIDQEATTQEAIYAVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ +G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKIAQREGRSGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L++L ++DF ILT+TE++L+ Q LM TEG+ LD + Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELEALTRADFVRILTETEASLVKQSVALMGTEGVTLDIS 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 D+++A+ADVAV +NSTV +IGARRLQTVMERVL+++SF+A D +TV IDA YVR + Sbjct: 362 PDAVEAIADVAVEVNSTVENIGARRLQTVMERVLDELSFTAPDRSGETVSIDAAYVRERV 421 Query: 424 GDFPSETDMYHFIL 437 D D+ FIL Sbjct: 422 ADLAKNADLSRFIL 435 >gi|192288739|ref|YP_001989344.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris TIE-1] gi|238692578|sp|B3Q8B9|HSLU_RHOPT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|192282488|gb|ACE98868.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris TIE-1] Length = 433 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 269/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG + TR+ FRKKLR GE++DKEI+IE S F+IPG Sbjct: 123 AQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIET-QAGSGSPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR KK R++V + L+ +E+D+L+D D + +++I VEN Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY LMKTEG+ LDF+ Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D +T +DA+YV+ ++ Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFQVDADYVKTNV 419 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 420 GDLAKNTDLSRFIL 433 >gi|23014725|ref|ZP_00054527.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Magnetospirillum magnetotacticum MS-1] Length = 442 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 265/437 (60%), Positives = 344/437 (78%), Gaps = 6/437 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL LR+E++PKNIL++GPTGVGK Sbjct: 6 FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE R +V +A Sbjct: 66 TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183 INAEER+LDALVG+TA + TR+ FRK LR+G + KE++I+VADT + + +FDIPG Sbjct: 126 EINAEERLLDALVGETAAAETRQKFRKMLREGALDSKEVEIQVADTGGAGLPSFDIPGMP 185 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ VG++NLS++ K +G GR K ++ V + L +ESD+L+D D V +D+I VEN Sbjct: 186 GSQVGMINLSDMLGKALGGGRTKPRKLPVPEALAALTAEESDKLLDQDKVVKDAIWAVEN 245 Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 +GIVF+DE DKI AR S + +G VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV LK+L++ D ILT+ E++L+ QY+ L+ TE +ILD Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVILD 365 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 F S++A+AD+A +NSTV +IGARRLQTVMER+LEDISF+A D T V I AE VR Sbjct: 366 FEPGSVEAIADLAAEINSTVENIGARRLQTVMERLLEDISFTAPDQPPGTKVTITAEMVR 425 Query: 421 LHIGDFPSETDMYHFIL 437 +G D+ FIL Sbjct: 426 DRVGALAKTADLAKFIL 442 >gi|39933383|ref|NP_945659.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris CGA009] gi|62286823|sp|Q6ND03|HSLU_RHOPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|39653008|emb|CAE25750.1| heat shock protein HslU, proteasome-related ATPase subunit [Rhodopseudomonas palustris CGA009] Length = 433 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 269/434 (61%), Positives = 347/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG + TR+ FRKKLR GE++DKEI+IE S F+IPG Sbjct: 123 AQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDKEIEIET-QAGSGSPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR KK R++V + L+ +E+D+L+D D + +++I VEN Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ T+HILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY LMKTEG+ LDF+ Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFS 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D +T +DA+YV+ ++ Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 420 GDLAKNTDLSRFIL 433 >gi|85714082|ref|ZP_01045071.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] gi|85699208|gb|EAQ37076.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] Length = 433 Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 346/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRRQQL LR+E++PKNIL++GPTGVG Sbjct: 3 HFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI RE +R EV+ + Sbjct: 63 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKEVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG +++ TR+ FRK+LR GE++DKEI+IE +S F+IPG Sbjct: 123 AQLAAEERVLDALVGANSSAATRDSFRKRLRAGELNDKEIEIET-QSSGGAPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA VG +++ ++F K MG GR K R++V + L+ +ESD+L+D D + ++I VEN Sbjct: 182 GAQVGAISIGDIFGK-MG-GRTKTRRLTVSDSHEILINEESDKLLDSDQLTLEAIAAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 240 DGIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L ++D R ILT+ E++LI QY LM TEG+ LD T Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELDALTRNDMRRILTEPEASLIKQYIALMHTEGVTLDIT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D++DALAD+AV +NSTV +IGARRLQTVMERVL+DISF+A D + +TV ID+ YV+ HI Sbjct: 360 DDAVDALADIAVAVNSTVENIGARRLQTVMERVLDDISFTAPDRKGETVRIDSGYVQKHI 419 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 420 GDLAKNADLSRFIL 433 >gi|115522400|ref|YP_779311.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris BisA53] gi|122297922|sp|Q07UQ3|HSLU_RHOP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|115516347|gb|ABJ04331.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris BisA53] Length = 433 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 269/434 (61%), Positives = 346/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAV+IALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQSDAKRAVSIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG +A+ TR+ FRKKLR GE++DKEI++E SS F+IPG Sbjct: 123 AQLAAEERVLDALVGASASPATRDSFRKKLRAGELNDKEIEVET-QASSGSPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR K R++V + L+ +E+D+L+D D + ++I VEN Sbjct: 182 GAQIGAVSLGDIFGK-MG-GRTKTRRLTVADSHEILVNEEADKLLDSDQLTIEAINAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E +LI QY L+ TEG+ L+F Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEVSLIKQYVALLGTEGVTLEFG 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISFSA D +T+ IDAE+V+ H+ Sbjct: 360 DDAIDALADVAVQVNSTVENIGARRLQTVMERVLDEISFSAPDRSGETIRIDAEFVQKHV 419 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 420 GDLAKNADLSRFIL 433 >gi|118590481|ref|ZP_01547883.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] gi|118436944|gb|EAV43583.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] Length = 434 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/434 (60%), Positives = 344/434 (79%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ+DAKRAVAIALRNRWRRQQL +R+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRYIVGQKDAKRAVAIALRNRWRRQQLQGQMREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF KVE TKFTE+GYVGR+VEQI+RDLV+ I++VR+ +R+ V+ + Sbjct: 63 KTEISRRLAKLANAPFTKVEATKFTEVGYVGRDVEQIVRDLVEAGISLVRDQKREAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVGK A+ TR+ FR KLR+GE+ DKEI++EV + + +FD+PG Sbjct: 123 AHMLAEERVLDALVGKNASPATRDSFRTKLRNGEMDDKEIEVEVR-AQAQMPSFDLPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASVG++N+S+L K G G+ K R +V Y L+ +ESD+L+D D V ++I +VEN Sbjct: 182 GASVGVMNVSDLLGKAFG-GQTKTKRTTVGDSYQMLINEESDKLLDDDKVVEEAISLVEN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA Sbjct: 241 SGIVFLDEIDKICAREGRAGADVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L+K DFR ILT+ E++LI QY L+ TE + L FT Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALDKDDFRAILTEPEASLIKQYVALLDTEKVKLSFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+ID +A +AV+LN++V +IGARRLQTVMER+L+++SF+A D + V I ++VR +I Sbjct: 361 EDAIDEIATIAVDLNASVENIGARRLQTVMERILDEVSFTAPDRPGEEVEITGKFVRDNI 420 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 421 GDLAKNVDLSKFIL 434 >gi|188579892|ref|YP_001923337.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium populi BJ001] gi|238692900|sp|B1ZL59|HSLU_METPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|179343390|gb|ACB78802.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium populi BJ001] Length = 437 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 269/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL LRDE+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R V+ + Sbjct: 63 KTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A AE RILDALVG TA+ TRE FRKKLR+ E+ DKE++IE+A + + F+IPG Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GAS+G +N+S++ K +G R K R++V Y L+ +ESD+L+D D + R++I+ VE Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI AR+ +G VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L+ L DF+ ILT TE++LI Q LM+TEG+ LDF Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D +TV IDA YVR Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAGYVRER 422 Query: 423 IGDFPSETDMYHFIL 437 + D + TD+ FIL Sbjct: 423 VADLAANTDLSRFIL 437 >gi|254295470|ref|YP_003061493.1| heat shock protein HslVU, ATPase HslU [Hirschia baltica ATCC 49814] gi|254044001|gb|ACT60796.1| heat shock protein HslVU, ATPase subunit HslU [Hirschia baltica ATCC 49814] Length = 435 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/434 (59%), Positives = 339/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+QL DLR+E+ PKNIL++GPTGVG Sbjct: 3 EFSPREIVSELDRFIVGQADAKRAVALALRNRWRRKQLSDDLREEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ +I +V+E + +VR + Sbjct: 63 KTEISRRLAKLAQAPFIKVEATKFTEVGYVGRDVEQIIRDLVEASIAMVKEEKSKDVRAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE R+LDALVG A +TRE F+ KLR G + DKEI+I+++D S + + DIPG Sbjct: 123 AESAAESRVLDALVGPDAKESTRESFQTKLRSGALDDKEIEIDLSDNGSPMQSMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GAS+G+LNL +L K G GR K ++M+V+ Y L+ DESD+L+D ++V RD+I++VE Sbjct: 183 GASMGMLNLGDLLGKGFG-GRTKTVKMTVKDAYRPLIDDESDKLVDQESVVRDAIKLVEE 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ R G GVSREGVQRDLLPL+EG++VSTK+G++ TD+ILFIASGA Sbjct: 242 EGIVFLDEIDKVATRQEAGGAGVSREGVQRDLLPLIEGTTVSTKHGAVKTDYILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L+ L DF+ ILT+ E++LI QY L+ EG+ ++F Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELQGLTHEDFKRILTEPEASLIKQYIALIGAEGMTIEFD 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 E SIDA+A++AV +N TV +IGARRL TV+ER+LE+ISF+A D ++ VI A+YVR + Sbjct: 362 ESSIDAIAEIAVQVNDTVENIGARRLHTVLERLLEEISFTAPDRSGESFVITADYVREKV 421 Query: 424 GDFPSETDMYHFIL 437 G + D+ +IL Sbjct: 422 GGYAGNADLSKYIL 435 >gi|316931713|ref|YP_004106695.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris DX-1] gi|315599427|gb|ADU41962.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris DX-1] Length = 433 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/434 (61%), Positives = 345/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AEER+LDALVG + TR+ FRKKLR GE++DKEI+IE + +IPG Sbjct: 123 AQIAAEERVLDALVGPGSGPATRDSFRKKLRSGELNDKEIEIET-QAGAGSPMLEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR K R++V + L+ +E+D+L+D D + +++I VEN Sbjct: 182 GAQIGAISLGDIFGK-MG-GRTKTRRLTVADSHEILVNEEADKLLDNDQLVQEAITAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++VSTK+G++ T+HILF+ASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFVASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY LMKTEG+ L+FT Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLEFT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D +T +DA+YV+ ++ Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVAPDRHGETFRVDADYVKTNV 419 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 420 GDLAKNTDLSRFIL 433 >gi|218528690|ref|YP_002419506.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium chloromethanicum CM4] gi|240137220|ref|YP_002961689.1| ATP-dependent hsl protease ATP-binding subunit hslU [Methylobacterium extorquens AM1] gi|254559232|ref|YP_003066327.1| ATP-dependent hsl protease ATP-binding subunit hslU [Methylobacterium extorquens DM4] gi|254802310|sp|B7KZ48|HSLU_METC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|218520993|gb|ACK81578.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium chloromethanicum CM4] gi|240007186|gb|ACS38412.1| ATP-dependent hsl protease ATP-binding subunit hslU [Methylobacterium extorquens AM1] gi|254266510|emb|CAX22274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Methylobacterium extorquens DM4] Length = 437 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 268/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL LRDE+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R V+ + Sbjct: 63 KTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A AE RILDALVG TA+ TRE FRKKLR E+ DKE++IE+A + S + F+IPG Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGMPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GAS+G +N+S++ K +G R K R++V + Y L+ +ESD+L+D D + R++I+ VE Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI AR+ +G VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L+ L DF+ ILT TE++LI Q LM+TEG+ LDF Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D +TV IDA YVR Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRDR 422 Query: 423 IGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 423 VEDLAANADLSRFIL 437 >gi|163850087|ref|YP_001638130.1| ATP-dependent protease ATP-binding subunit [Methylobacterium extorquens PA1] gi|238687371|sp|A9W0F3|HSLU_METEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|163661692|gb|ABY29059.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium extorquens PA1] Length = 437 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 268/435 (61%), Positives = 343/435 (78%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL LRDE+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLKGPLRDEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+K+E TKFTE+GYVGR+VEQI+RDLV+V I + RE +R V+ + Sbjct: 63 KTEIARRLARLAGAPFLKIEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A AE RILDALVG TA+ TRE FRKKLR E+ DKE++IE+A + S + F+IPG Sbjct: 123 AEAAAESRILDALVGPTASQATRESFRKKLRASELDDKEVEIELAPSGSQGLPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GAS+G +N+S++ K +G R K R++V + Y L+ +ESD+L+D D + R++I+ VE Sbjct: 183 PGASMGAINISDMLGKALGGQRGKPRRITVAEAYAPLIAEESDKLVDDDALTREAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI AR+ +G VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L+ L DF+ ILT TE++LI Q LM+TEG+ LDF Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELQPLTVEDFKQILTATEASLIKQTVALMETEGVTLDF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED+IDALA VAV +N +V +IGARRLQTV+ERV+++ISF+A+D +TV IDA YVR Sbjct: 363 TEDAIDALARVAVEVNGSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRDR 422 Query: 423 IGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 423 VEDLAANADLSRFIL 437 >gi|300024848|ref|YP_003757459.1| heat shock protein HslVU, ATPase HslU [Hyphomicrobium denitrificans ATCC 51888] gi|299526669|gb|ADJ25138.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomicrobium denitrificans ATCC 51888] Length = 435 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 340/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDRYI+GQQDAKRAVAIALRNRWRRQQL +LRDE++PKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRYIVGQQDAKRAVAIALRNRWRRQQLTGELRDEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ IIRDLV+V I +V+ +R +VR + Sbjct: 63 KTEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIIRDLVEVGIALVKNVKRQDVRAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A +AEER++DALVG ++ TRE FRKKLR+ E++DKEIDI VADT+ + FD+PGGA Sbjct: 123 AEKSAEERVIDALVGSGSSPATRESFRKKLRNNELNDKEIDILVADTAPQLPMFDLPGGA 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 S+ +NL ++ K +G R K R++V+ + L+ DESD+LID D + +++ V+N G Sbjct: 183 SMSTINLGDMLGKALGQ-RTKPRRVTVKDSFEILIADESDKLIDNDQITAEAVAAVQNDG 241 Query: 246 IVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 IVFLDE DKI +R G G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA Sbjct: 242 IVFLDEIDKICSRGDGTRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHVS+P+DLLPE+QGR P+RV L +L + D + ILT+ ++LI QY LM+TEG+ L+F Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELNALTRDDLKRILTEPHASLIKQYVALMETEGVTLEFK 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++IDA+AD AV +NSTV +IGARRLQTV+ERVL+DISF ASD +T+ ID YV + Sbjct: 362 PEAIDAIADAAVEVNSTVENIGARRLQTVLERVLDDISFEASDRNGQTLAIDGAYVTQRV 421 Query: 424 GDFPSETDMYHFIL 437 G D+ FIL Sbjct: 422 GQLSKNADLSRFIL 435 >gi|163797095|ref|ZP_02191050.1| Heat shock protein HslU [alpha proteobacterium BAL199] gi|159177611|gb|EDP62164.1| Heat shock protein HslU [alpha proteobacterium BAL199] Length = 437 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 343/435 (78%), Gaps = 5/435 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+IIGQ DAKRAVAIALRNRWRR+QLP LR E++PKNIL++GPTGVGK Sbjct: 4 FSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRRQLPEALRQEILPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIK+E TKFTE+GYVGR+VE I+RDLV+VAI++ RE R EV +A Sbjct: 64 TEIARRLARLAEAPFIKIEATKFTEVGYVGRDVESIVRDLVEVAISMTRERMRREVHAKA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN--FDIPG- 183 + AEER++DALVG +A++ TR+ FRK LR+G ++++EI+IE++ F+IPG Sbjct: 124 ELAAEERVIDALVGTSASAETRQKFRKMLREGALAEREIEIELSGGGGPSGMPSFEIPGM 183 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +G+++LSE+ K G G+K+K RMSV Y L+++E+D+L+D + V R++I+ VE Sbjct: 184 PGAQMGMVDLSEMLGKAFG-GQKRKRRMSVSDSYDLLVKEEADKLLDQELVTRNAIETVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DKI + G VSREGVQRDLLPL+EG++V+TK+G + TD +LFIASG Sbjct: 243 QNGIVFLDEIDKIARSEQRGGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDFVLFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH ++P+DLLPE+QGR P+RV L++L ++DFR ILT+ E++L+ QY L+ TEG+ L+F Sbjct: 303 AFHTAKPSDLLPELQGRLPIRVELQALTRNDFRRILTEPEASLVTQYVALLGTEGVTLEF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 ED+IDALAD+AV +N TV +IGARRL TV+E++LE+ISF+ASD +++VIDAE VR Sbjct: 363 AEDAIDALADLAVEINRTVENIGARRLHTVLEKLLEEISFTASDRTGESIVIDAELVRTR 422 Query: 423 IGDFPSETDMYHFIL 437 +G+ D+ FIL Sbjct: 423 VGELAKNADLSRFIL 437 >gi|304392730|ref|ZP_07374670.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130] gi|303295360|gb|EFL89720.1| ATP-dependent protease HslVU, ATPase subunit [Ahrensia sp. R2A130] Length = 434 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/434 (59%), Positives = 349/434 (80%), Gaps = 4/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIGQ DAKRAVA+A+RNRWRRQQL + +R+E+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRFIIGQNDAKRAVAVAMRNRWRRQQLESPMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIK+E TKFTE+GYVGR+VE IIRDLV++ I +VRE +R++V+ + Sbjct: 63 KTEISRRLAKLAGAPFIKIEATKFTEVGYVGRDVESIIRDLVEIGIGLVREKKREQVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AE+R+LDALVG TA+ +TR F KKLR+GE+ +KEI++EVADT + F+IPG Sbjct: 123 AHIAAEDRVLDALVGSTASPSTRASFMKKLREGELDEKEIEVEVADTGAP-GGFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+++L E+ SK MG + KK + +V++ Y L+ +ESD+L+D + V ++++ V+N Sbjct: 182 PGQGGMIDLGEIMSK-MGGKKTKKRKTTVKESYELLIAEESDKLLDDEQVVAEALESVQN 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 IVFLDE DKI ++ G VSREGVQRDLLPLVEG++V+TKYG + TDHILF+ASGA Sbjct: 241 DAIVFLDEIDKIAVSENVRGGSVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFVASGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L K DF ILT+TE++LI QY L+ TE + ++FT Sbjct: 301 FHVAKPSDLLPELQGRLPIRVELRALTKDDFVRILTETEASLIKQYIALLGTEDMTVEFT 360 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED+IDALAD+AV LNS+V +IGARRLQTVME+VL+++SF A D TV +DAE+VR ++ Sbjct: 361 EDAIDALADIAVELNSSVENIGARRLQTVMEKVLDEVSFEAPDRSGDTVTVDAEFVRKNV 420 Query: 424 GDFPSETDMYHFIL 437 G+ ++TD+ +IL Sbjct: 421 GELAADTDLSRYIL 434 >gi|91974898|ref|YP_567557.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris BisB5] gi|123749455|sp|Q13E33|HSLU_RHOPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91681354|gb|ABE37656.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris BisB5] Length = 433 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 262/434 (60%), Positives = 348/434 (80%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGILREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLAGAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVRERKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AEER+LDALVG ++ TR+ FR+KLR G+++DKEI++E SS F+IPG Sbjct: 123 AQIAAEERVLDALVGPGSSPATRDSFRRKLRAGDLNDKEIEVET-QASSGSPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G +++ ++F K MG GR K R++V + L+ +E+D+L+D D + +++I +VEN Sbjct: 182 GGQIGAISIGDIFGK-MG-GRTKTRRLTVADSHDILINEEADKLLDNDQLVQEAINVVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++V+TK+G++ T+HILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTEHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L + D R ILT+ E++LI QY L++TEG+ L+F+ Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALTRDDMRRILTEPEASLIKQYIALLQTEGVTLEFS 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL++ISF A D +T+ IDA+YV+ ++ Sbjct: 360 DDAIDALADVAVGVNSTVENIGARRLQTVMERVLDEISFVAPDRGGETIRIDADYVQKNV 419 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 420 GDLAKNTDLSRFIL 433 >gi|254419306|ref|ZP_05033030.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp. BAL3] gi|196185483|gb|EDX80459.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas sp. BAL3] Length = 433 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/432 (60%), Positives = 340/432 (78%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SPREIVSELDRYI+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLSPREIVSELDRYIVGQDDAKRAVAVALRNRWRRKRVPEDLRDEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR EVR + Sbjct: 63 KTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDRRRGEVRAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AE+RILDALVG A TR+ FRKKLR G++ DKEI+I +ADT+S I DIPGG Sbjct: 123 AEGAAEDRILDALVGPGAGQATRDSFRKKLRAGDLDDKEIEIALADTASPIQGLDIPGGG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +VG+LNLSE+ K MG GR K ++++V+ L+ +E D+L+D D++ ++++ + EN G Sbjct: 183 AVGLLNLSEMLGK-MGGGRTKTVKLTVRDATAPLIAEEGDKLLDQDSLTKEALILAENEG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ AR +G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAFH Sbjct: 242 IVFLDEIDKVAARQGASGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TE + L FT+D Sbjct: 302 VAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEDVTLTFTDD 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +I+ALAD AV NS V +IGARRLQTV+ERVLE+ SF ASDL +TV D VR + Sbjct: 362 AIEALADAAVAANSAVENIGARRLQTVLERVLEETSFKASDLAGQTVNFDGAAVRDKLSL 421 Query: 426 FPSETDMYHFIL 437 + D+ FIL Sbjct: 422 LTKDVDLSRFIL 433 >gi|83313636|ref|YP_423900.1| ATP-dependent protease ATP-binding subunit HslU [Magnetospirillum magneticum AMB-1] gi|82948477|dbj|BAE53341.1| ATP-dependent protease HslVU [Magnetospirillum magneticum AMB-1] Length = 442 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 258/437 (59%), Positives = 340/437 (77%), Gaps = 6/437 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL LR+E++PKNIL++GPTGVGK Sbjct: 6 FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLSESLREEVLPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + RE R +V +A Sbjct: 66 TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAILMTRERLRKQVTAKA 125 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-- 183 I AEER+LDALVG+TA + TR+ FRK LR+G + KE++I+VA+T + + FDIPG Sbjct: 126 EIAAEERLLDALVGETAGTETRQKFRKMLREGALDAKEVEIQVAETGGAGLPTFDIPGMP 185 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ VG++NL ++ K +G GR + ++ V + L +ESD+L+D D V +D+I VEN Sbjct: 186 GSQVGMINLGDMLGKALGGGRTRPRKLPVPEALDVLTAEESDKLLDQDKVVKDAIWAVEN 245 Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 +GIVF+DE DKI AR S + +G VSREGVQRDLLPL+EG++V+TK+GS+ TDH+LFIAS Sbjct: 246 HGIVFIDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVATKHGSVKTDHVLFIAS 305 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV LK+L++ D ILT+ E++L+ QY+ L+ TE + L Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELKALSRDDLVRILTEPEASLLKQYEALLATEEVTLT 365 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 F S+DA+AD+A +N+TV +IGARRLQTVMER+LE+ISF+A D TV I AE VR Sbjct: 366 FEPGSVDAIADLAAEINATVENIGARRLQTVMERLLEEISFTAPDQPPGTTVTITAEMVR 425 Query: 421 LHIGDFPSETDMYHFIL 437 +G+ D+ FIL Sbjct: 426 ERVGELAKTADLAKFIL 442 >gi|182677250|ref|YP_001831396.1| ATP-dependent protease ATP-binding subunit HslU [Beijerinckia indica subsp. indica ATCC 9039] gi|238691214|sp|B2ICL8|HSLU_BEII9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|182633133|gb|ACB93907.1| heat shock protein HslVU, ATPase subunit HslU [Beijerinckia indica subsp. indica ATCC 9039] Length = 435 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 254/434 (58%), Positives = 339/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRR +L +R+E++PKNIL++GPTG G Sbjct: 3 DFSPREIVSELDRYIVGQNDAKRAVAIALRNRWRRLKLEGAMREEVLPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+ AI +V+ +R + + Sbjct: 63 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVETAIVMVKAEKRKSLEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + EER+LDALVG A TR+ FRKKLRDG++ DKEI+IE+A + ++ FD+P Sbjct: 123 AHQSVEERLLDALVGANAAQTTRDSFRKKLRDGDLEDKEIEIELAQATGNLPMFDLPNMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA+VG +++ ++F+K +G K++ R +V++ L+ +ES++L+D + + +I VEN Sbjct: 183 GAAVGAISIGDIFAKSLGRSTKRR-RSTVKEAREPLLAEESEKLMDQEQIIAQAIHSVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG+SV+TK+G+I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKICAREGRGGADVSREGVQRDLLPLIEGTSVATKHGTIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L LN+ DFR ILT+TE +LI QY+ L+ TEG+ L FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELLPLNEEDFRRILTETEVSLIKQYEALLATEGVNLVFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +++ +LA VAV +NS+V +IGARRLQTVMERVL+++S++A D +T+ IDA YV +I Sbjct: 362 PEAVSSLAKVAVQVNSSVENIGARRLQTVMERVLDEVSYTAPDRSGQTITIDAAYVEKNI 421 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 422 GDLAKNTDLSRFIL 435 >gi|114571522|ref|YP_758202.1| ATP-dependent protease ATP-binding subunit HslU [Maricaulis maris MCS10] gi|122314939|sp|Q0AKC9|HSLU_MARMM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114341984|gb|ABI67264.1| heat shock protein HslVU, ATPase subunit HslU [Maricaulis maris MCS10] Length = 435 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/434 (57%), Positives = 339/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +F+PREIVSELDR+I+GQ DAK+AVAIALRNRWRR+QL L +E+ PKNIL++GPTGVG Sbjct: 3 DFTPREIVSELDRFIVGQADAKKAVAIALRNRWRRRQLDDALAEEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI RDLV++AINIVRE++R++V+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIARDLVEIAINIVRETKREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE R++DALVG ++ TRE FRK+L GE+ DK+++I++AD+ + + DIPG Sbjct: 123 AHAAAENRVVDALVGPNSSEATRESFRKRLLAGELDDKDVEIQLADSGAGMQMLDIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G++N+ ++ K G + K +RM V+ Y L+ +E+D+L+D + D+I++ EN Sbjct: 183 TGGAGVINIGDILGKGFGQ-KTKTVRMKVKDAYEPLINEEADKLLDDSQITADAIKLAEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR G VSREGVQRDLLPL+EG++V+TK+GSI TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARSDARGGDVSREGVQRDLLPLIEGTTVATKHGSIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+D+LPE+QGR P+RV L +L+++D + IL + E++LI QY L+ TEG+ LDFT Sbjct: 302 FHVAKPSDMLPELQGRLPIRVELSALSEADLKRILVEPEASLIKQYVGLLATEGVSLDFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALA +A + N++V +IGARRLQTVME+++EDISF+ASD + + IDA+YV H+ Sbjct: 362 DDAIDALAKLAADFNASVENIGARRLQTVMEKLVEDISFTASDRSGQEITIDADYVAEHV 421 Query: 424 GDFPSETDMYHFIL 437 G D+ FIL Sbjct: 422 GTLAKNADLSKFIL 435 >gi|86747529|ref|YP_484025.1| ATP-dependent protease ATP-binding subunit HslU [Rhodopseudomonas palustris HaA2] gi|123099259|sp|Q2J346|HSLU_RHOP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|86570557|gb|ABD05114.1| heat shock protein HslVU, ATPase subunit HslU [Rhodopseudomonas palustris HaA2] Length = 433 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/434 (60%), Positives = 344/434 (79%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGALREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLV+VAI VRE +R +V+ + Sbjct: 63 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AEER+LDALVG ++ TR+ FR+KLR GE++DKEI+IE F+IPG Sbjct: 123 AQIAAEERVLDALVGPGSSPATRDSFRRKLRTGELNDKEIEIET-QAGGGSPMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G +++ ++F K MG GR K R++V + L+ +E+D+L+D D + +++I VEN Sbjct: 182 GGQIGAISIGDIFGK-MG-GRTKTRRLTVVDSHDILVNEEADKLLDNDQLVQEAINAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI RD +G VSREGVQRDLLPL+EG++V+TK+G++ TDHILFIASGA Sbjct: 240 NGIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVATKHGAVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L +L++ D R ILT+ E++LI QY L++TEG+ L+F Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELNALSRDDMRRILTEPEASLIKQYVALLQTEGVTLEFG 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +NSTV +IGARRLQTVMERVL+DISF A D +T+ IDA+YV+ ++ Sbjct: 360 DDAIDALADVAVAVNSTVENIGARRLQTVMERVLDDISFGAPDRGGETIRIDADYVQKNV 419 Query: 424 GDFPSETDMYHFIL 437 GD TD+ FIL Sbjct: 420 GDLAKNTDLSRFIL 433 >gi|170749489|ref|YP_001755749.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium radiotolerans JCM 2831] gi|238688891|sp|B1M5N6|HSLU_METRJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|170656011|gb|ACB25066.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium radiotolerans JCM 2831] Length = 437 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/435 (59%), Positives = 342/435 (78%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQL LR+E+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRQQLTGPLREEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI + R+++R+ V+ + Sbjct: 63 KTEIARRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIGLTRQAKREGVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183 A AE RILDALVG TA+ TR+ FR+KLR+ E+ DKE+++E+ ++ + + F+IPG Sbjct: 123 AEAAAENRILDALVGPTASQATRDSFRRKLRNSELDDKEVELELTSSAPAGMPMFEIPGV 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GAS+G +N+ ++ K +G R K R+ V+ Y LM +ESD+L+D + + R++I+ VE Sbjct: 183 PGASMGAINIGDMLGKALGGQRGKPRRILVRDAYAPLMAEESDKLVDDEALVREAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR+ + VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASG Sbjct: 243 NNGIVFLDEIDKICAREGRSSGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+PADLLPE+QGR P+RV L+ L DF+ ILT TE++L+ Q LM+TEG+ L F Sbjct: 303 AFHVSKPADLLPELQGRLPIRVELQPLTVDDFKQILTATEASLLKQTVALMETEGVTLTF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D++DALA VAV +NS+V +IGARRLQTV+ERV+++ISF+A+D +TV IDA YVR Sbjct: 363 TDDAVDALARVAVEVNSSVENIGARRLQTVLERVIDEISFTATDRSGETVPIDAAYVRER 422 Query: 423 IGDFPSETDMYHFIL 437 + D S D+ FIL Sbjct: 423 VQDLASNADLSRFIL 437 >gi|220925310|ref|YP_002500612.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium nodulans ORS 2060] gi|254802311|sp|B8IMW6|HSLU_METNO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|219949917|gb|ACL60309.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium nodulans ORS 2060] Length = 437 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/435 (59%), Positives = 338/435 (77%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL LR+E+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLQGPLREEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R V+ + Sbjct: 63 KTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG- 183 A AE RILDALVG TA+ TR+ FR++LR GE+ DKE+++E+A +++ + F+IPG Sbjct: 123 AEAAAEARILDALVGPTASQATRDSFRRRLRAGELDDKEVELELAGSATAGLPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G +NL ++ K +G R + R++V+ + LM +ESD+L+D DT+ +++I+ VE Sbjct: 183 PGAAMGAINLGDMLGKALGGQRGRPRRITVRDAHAPLMTEESDKLLDQDTIIQEAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASG Sbjct: 243 DNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKYGPVKTDHILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L L DFR ILT+TE++L+ Q LM TEG+ + F Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVTVTF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D++DALA VAV++NS+V +IGARRLQTV+ERVL++ISF+A D + V IDA YVR Sbjct: 363 TDDAVDALARVAVDVNSSVENIGARRLQTVLERVLDEISFAAPDRSGEIVTIDAAYVRER 422 Query: 423 IGDFPSETDMYHFIL 437 + D+ FIL Sbjct: 423 VESLAQNADLSRFIL 437 >gi|299133207|ref|ZP_07026402.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2] gi|298593344|gb|EFI53544.1| heat shock protein HslVU, ATPase subunit HslU [Afipia sp. 1NLS2] Length = 433 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 265/434 (61%), Positives = 341/434 (78%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR QL LR+E++PKNIL++GPTGVG Sbjct: 3 DFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLQLTGSLREEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI RE +R +V + Sbjct: 63 KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIAQTREKKRKDVEAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+++TR+ FR++LR GE++DKEI++E S F+IPG Sbjct: 123 AELAAEERVLDALVGANASASTRDSFRRRLRAGELNDKEIEVET-QAGGGPSMFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G ++L ++F K MG GR K +++V Y L+ +ESD+L+D + + RD+I VEN Sbjct: 182 GAQMGAISLGDIFGK-MG-GRTKMRKLTVADSYEVLVNEESDKLLDDEALTRDAIHAVEN 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI R+ VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 240 NGIVFLDEIDKICVREGARTGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + D R ILT+ ES+LI QY LM TEG+ LD T Sbjct: 300 FHIAKPSDLLPELQGRLPIRVELQALVRDDLRRILTEPESSLIKQYVALMATEGVTLDIT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+IDALADVAV +N++V +IGARRLQTV+ERVL++ SF A D+ +TV IDA YV+ +I Sbjct: 360 DDAIDALADVAVAVNASVENIGARRLQTVLERVLDETSFHAPDMHGQTVTIDAAYVQKYI 419 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 420 GDLAKNADLSRFIL 433 >gi|149201420|ref|ZP_01878395.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035] gi|149145753|gb|EDM33779.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035] Length = 435 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 255/434 (58%), Positives = 332/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDRYIIGQ++AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRYIIGQKEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI R+ RD+V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMRDDVKTR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++ A+ G+ A TR++FRKKLR+G + D IDIEVADTSS + DIPG Sbjct: 123 AEQAAEERVITAIAGEDARQGTRDMFRKKLREGLLDDTMIDIEVADTSSPLGMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NL ++F K G R R+SV Y L+ +E+D+L+D +TVHR +++ VE Sbjct: 183 GSQMGMMNLGDIFGKAFGQ-RTTTKRVSVADSYALLIGEEADKLLDDETVHRTALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYTALMGTEEVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SF+A D +TV +DA +V ++ Sbjct: 362 EDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGETVTVDAGFVEANL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELMRSADLSRYVL 435 >gi|83944946|ref|ZP_00957312.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] gi|83851728|gb|EAP89583.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] Length = 434 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 257/432 (59%), Positives = 340/432 (78%), Gaps = 2/432 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIV ELDR+IIGQ DAK+AVAIALRNRWRR+ LP LR+E+ PKNIL++GPTGVGK Sbjct: 4 FSPREIVHELDRHIIGQGDAKKAVAIALRNRWRRKHLPEGLREEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T ISRRLA+LAGAPF+KVE TKFTE+GYVGR+V+ I RDLV+VAI++VRE +R+EV+ +A Sbjct: 64 TEISRRLAKLAGAPFLKVEATKFTEVGYVGRDVDSIARDLVEVAISLVREKKREEVKAKA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPGGA 185 AE+R+LDALVGK A S+TRE FRKKL GE+ DKEI+IE+ D S++ D+PG Sbjct: 124 HGAAEQRVLDALVGKDAGSSTREAFRKKLLSGELDDKEIEIEIIDDSANPFQGMDLPGMG 183 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 S+G++NL ++ K G GR K +R +V++ Y L+ +E+D+L+D + + ++I++ EN G Sbjct: 184 SMGVINLGDMLGKGFG-GRPKTLRTTVKEAYEPLINEEADKLLDENQIQSEAIRLAENEG 242 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAFH Sbjct: 243 IVFLDEIDKVSARADARGADVSREGVQRDLLPLIEGATVSTKYGPMKTDHVLFIASGAFH 302 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 VS+P+DLLPE+QGR P+RV L++LN+ DFR ILT+ E++LI QY LMKTEG L F + Sbjct: 303 VSKPSDLLPELQGRLPIRVELQALNRDDFRAILTEPEASLITQYVALMKTEGFELSFDDS 362 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +IDA+AD A +N++V +IGARRLQT++E+V E+IS++ASD +++ IDA+YV +G Sbjct: 363 AIDAIADFAAEVNASVENIGARRLQTILEKVCEEISYTASDRSGESLAIDADYVSDRVGG 422 Query: 426 FPSETDMYHFIL 437 D+ FIL Sbjct: 423 LARNADLSKFIL 434 >gi|85705741|ref|ZP_01036838.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217] gi|85669731|gb|EAQ24595.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217] Length = 435 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 254/434 (58%), Positives = 333/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI R+ R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDWMREDVKTR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++ A+ G+ A TRE+FRKKLRDG + D ID+EVADTS+ + DIPG Sbjct: 123 AEHAAEERVITAIAGEDAREGTREMFRKKLRDGLLDDTMIDVEVADTSNPLGMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NL ++F K G GR R+SV Y L+ +E+D+L+D + V+R +++ VE Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRTTTKRVSVADSYALLIGEEADKLLDDEAVNRTALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L ++DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEADFVRILTETDNALTLQYTALMGTEEVTVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SF+A D ++VV+DA +V ++ Sbjct: 362 EDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGESVVVDAAFVDTNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELMKSADLSRYVL 435 >gi|83594929|ref|YP_428681.1| ATP-dependent protease ATP-binding subunit HslU [Rhodospirillum rubrum ATCC 11170] gi|123766890|sp|Q2RNA1|HSLU_RHORT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|83577843|gb|ABC24394.1| Heat shock protein HslU [Rhodospirillum rubrum ATCC 11170] Length = 435 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 248/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL LRDE++PKNIL++GPTGVGK Sbjct: 4 FTPREIVSELDRHIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV+ A+ R+ R +V +A Sbjct: 64 TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIIRDLVETALTQERDRLRKQVNAKA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 NAEER+LDALVG A+ TR+ FRK LR+G+I+DKEI+++V D+ + DIPG G Sbjct: 124 EANAEERVLDALVGDRASPETRQKFRKMLREGQINDKEIEVQVQDSGGALPTMDIPGMPG 183 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 A +G+LNL+++F K G+ R K +M+V+ + L+R+E+D+L+D + V + +I VEN Sbjct: 184 AQMGMLNLNDIFGKAFGN-RTKARKMTVEDSHAVLVREEADKLLDEEQVVKAAIAAVENN 242 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF Sbjct: 243 GIVFLDEIDKIATASERRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGAF 302 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H ++PADLLPE+QGR P+RV L +LN DF+ IL + E++LI QYK L+ TEG+ L+F + Sbjct: 303 HTAKPADLLPELQGRLPIRVELSALNAGDFKRILLEPEASLITQYKALLATEGVTLEFPD 362 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D+++A+A++A +N +V +IGARRL TV+ER+LE+ISF+A+D +T+V+ + V+ +G Sbjct: 363 DTVEAIAEIATEINGSVENIGARRLHTVLERLLEEISFTATDRSGETIVVTRDMVKERVG 422 Query: 425 DFPSETDMYHFIL 437 ++ D+ FIL Sbjct: 423 ALAAKADLSRFIL 435 >gi|163745124|ref|ZP_02152484.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] gi|161381942|gb|EDQ06351.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] Length = 435 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 252/434 (58%), Positives = 332/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDRYIIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRYIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQIIRDL+D +I + RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIIRDLLDSSIVMTREFMREDVKTK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++DA+ G A TRE+FRKKLR GE+ D I++EVADTSS DIPG Sbjct: 123 AEQAAEERVIDAIAGTDARDGTREMFRKKLRSGELDDTMIELEVADTSSPFPMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G G++NL +LF K MG GR K R++V Y L+ +E+D+L+D + V+R +I+ VE Sbjct: 183 GGGAGMMNLGDLFGKAMG-GRTTKKRLAVADSYEVLLGEEADKLLDDEAVNRAAIEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG+ VSTKYG++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKYGAVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY L++TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTRQYTALLRTEELTVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 E+ I ALA +A ++N++V +IGARRL TVMERV E++SF A D + + +DA++V ++ Sbjct: 362 EEGIAALAKIAADVNTSVENIGARRLYTVMERVFEEVSFDAPDRSGQEITVDADFVEKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELTRSTDLSRYVL 435 >gi|170738607|ref|YP_001767262.1| ATP-dependent protease ATP-binding subunit HslU [Methylobacterium sp. 4-46] gi|238688061|sp|B0UFH4|HSLU_METS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|168192881|gb|ACA14828.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacterium sp. 4-46] Length = 437 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/435 (59%), Positives = 335/435 (77%), Gaps = 3/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYI+GQ DAKRAVAIALRNRWRRQQL LR+E+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRYIVGQADAKRAVAIALRNRWRRQQLHGPLREEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + R+ +R V+ + Sbjct: 63 KTEISRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLKRDEKRRSVQAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS-SDISNFDIPG- 183 A AE RILDALVG TA TR+ FR++LR GE+ DKE++IE+A + S + F+IPG Sbjct: 123 AEAAAEARILDALVGPTAGQATRDSFRRRLRAGELDDKEVEIELASAAPSGLPMFEIPGV 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G +NL ++ K +G + K R++V+ + LM +ESD+L+D D + +++++ VE Sbjct: 183 PGAAMGAINLGDMLGKALGGQKGKPRRVTVRDAHAPLMAEESDKLLDQDAIVQEAVREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 + GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG++V+TK+G + TDHILFIASG Sbjct: 243 DNGIVFLDEVDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DLLPE+QGR P+RV L L DFR ILT+TE++L+ Q LM TEG+ + F Sbjct: 303 AFHVSKPSDLLPELQGRLPIRVELAPLTVDDFRRILTETEASLLKQAVALMATEGVAVTF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED++DALA VAV +NS+V +IGARRLQTV+ERVL++ISF+A D ++V IDA YVR Sbjct: 363 TEDAVDALARVAVEVNSSVENIGARRLQTVLERVLDEISFTAPDRAGESVTIDAAYVRER 422 Query: 423 IGDFPSETDMYHFIL 437 + D+ FIL Sbjct: 423 VESLAQNADLSRFIL 437 >gi|254511353|ref|ZP_05123420.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae bacterium KLH11] gi|221535064|gb|EEE38052.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae bacterium KLH11] Length = 435 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 249/434 (57%), Positives = 336/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP D+RDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDIRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL D AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLADAAILQTREYMREDVKTR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+++A+ G A TRE+FRKKL+ GE+ D EI++E++DTS+ + FDIPG Sbjct: 123 AHQAAEDRVIEAIAGTDAREATREMFRKKLKAGELDDTEIELELSDTSNPMPMFDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G++NL ++F K G GR + +M+V + Y L+ +E+D+L+D +TV+R +++ VE Sbjct: 183 GGQMGMMNLGDIFGKAFG-GRTVRRKMTVAESYEALIGEEADKLLDDETVNRVALESVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A ++N ++ +IGARRL TVMERV ED+SF+A D V +DA +V ++ Sbjct: 362 EDGIAALARIAADVNQSIENIGARRLYTVMERVFEDLSFAAPDKAGTEVTVDAAFVNDNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ S TD+ ++L Sbjct: 422 GELTSSTDLSRYVL 435 >gi|296448577|ref|ZP_06890450.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus trichosporium OB3b] gi|296253917|gb|EFH01071.1| heat shock protein HslVU, ATPase subunit HslU [Methylosinus trichosporium OB3b] Length = 435 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 257/434 (59%), Positives = 340/434 (78%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ+DAKRAVA+ALRNRWRR +L +R+E++PKNIL++GPTG G Sbjct: 3 DFSPREIVSELDRFIVGQKDAKRAVAVALRNRWRRLRLEGSMREEVLPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+VAI +V++ RR +V + Sbjct: 63 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVAIMLVKDKRRKDVEAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER+LDALVG A+ TR+ FRKKLR GE++DKEI+IE+A + + + F++P Sbjct: 123 AQLAAEERVLDALVGPAASPATRDSFRKKLRAGEMNDKEIEIEIAQSGAQMPMFELPNMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GASV ++ ++F K GR K+ +M V+ + L+ +ES++LID + R++I VEN Sbjct: 183 GASVSAFSIGDIFGKAF-QGRAKRRKMQVKDAHAPLLAEESEKLIDQEESVREAIAEVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR+ G VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGA Sbjct: 242 NGIVFLDELDKICAREGRGGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHVLFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+TE+ L QY L+ TEG+ LDF Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELASLDEEDFRRILTETEACLTKQYVALLATEGVALDFA 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++DA+A VAV +NS+V +IGARRLQTVMERVL+++SFSASD +TV ID +YV HI Sbjct: 362 PSAVDAIARVAVQVNSSVENIGARRLQTVMERVLDEVSFSASDRAGETVTIDGDYVEKHI 421 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 422 GDLAKNRDLSRFIL 435 >gi|110677840|ref|YP_680847.1| ATP-dependent protease ATP-binding subunit HslU [Roseobacter denitrificans OCh 114] gi|122973096|sp|Q16CY2|HSLU_ROSDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|109453956|gb|ABG30161.1| heat shock protein HslVU, ATPase subunit HslU, putative [Roseobacter denitrificans OCh 114] Length = 435 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/434 (57%), Positives = 335/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+ RD+V+ Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDHMRDDVKAN 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++ A+ G+ A +TRE+FRKKL+ G++ D I+++VADTSS DIPG Sbjct: 123 AHQAAEERVITAIAGEDARESTREMFRKKLKAGDLDDTVIELDVADTSSPFPMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G ++G++NL ++F K +G GR + +M+V + Y L+ +E+D+L+D +TV+R +I+ VE Sbjct: 183 GGNMGMMNLGDIFGKALG-GRTTRKKMTVSQSYDILIGEEADKLLDDETVNRAAIEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ A+ G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCAKSDTRGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SFSA D + +++DA +V ++ Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAGEEIIVDAAFVDENL 421 Query: 424 GDFPSETDMYHFIL 437 G TD+ ++L Sbjct: 422 GALAKSTDVSRYVL 435 >gi|84514931|ref|ZP_01002294.1| ATP-dependent protease ATP-binding subunit [Loktanella vestfoldensis SKA53] gi|84511090|gb|EAQ07544.1| ATP-dependent protease ATP-binding subunit [Loktanella vestfoldensis SKA53] Length = 432 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/432 (58%), Positives = 328/432 (75%), Gaps = 2/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI RE R++VR + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAILDTREHMREDVRTK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEER++ A+ G A TRE+FR+KL+ GE+ I++E+ DT++ + F+IPG Sbjct: 123 AREAAEERVITAVAGTDAREGTREMFRRKLKSGELDSTVIELELTDTTNPMGGFEIPGQP 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 G++NL +LF K MG GR K RM+V Y L+ DE+D+L+D +TV + +++ VE G Sbjct: 183 G-GMMNLGDLFGKAMG-GRTVKKRMTVADSYDALIADEADKLLDDETVTKAALEAVEQSG 240 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGAFH Sbjct: 241 IVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGAFH 300 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM+TE + + FTED Sbjct: 301 VAKPSDLLPELQGRLPIRVELRALTEGDFVRILTETDNALTLQYSALMQTEQVTVTFTED 360 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A ++N V +IGARRL TVMERV ED+SF+A D + + +DA++V H+G+ Sbjct: 361 GIKALAKIAADVNEAVENIGARRLYTVMERVFEDLSFNAPDRGGEEIAVDADFVEKHLGE 420 Query: 426 FPSETDMYHFIL 437 D+ ++L Sbjct: 421 LSRSVDVSRYVL 432 >gi|84501208|ref|ZP_00999413.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] gi|84390499|gb|EAQ02987.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] Length = 435 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/434 (56%), Positives = 335/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALR+RWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRSRWRRRQLEDDLRDEVFPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDL+D AI + RE R++V+ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLMDSAIAMTREHMREDVKAT 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+++AL G A TRE+FRKKLR+GE+ D EI++++AD S+ ++ D+PG Sbjct: 123 AHKMAEDRVIEALAGSDAREGTREMFRKKLRNGELDDTEIELDLADNSNPMAMLDMPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G++NL ++F K G G+ + +M V Y L+ +E+D+L+D +TV+R ++ VE Sbjct: 183 GQQMGMMNLGDIFGKAFG-GKTVRRKMRVADSYEVLLGEEADKLLDDETVNRAALTAVEE 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGAEVSREGVQRDLLPLIEGTTVSTKYGAVRTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L+SL ++DF ILT+T++ L QY LM+TEG+ + FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELQSLTEADFVAILTETDNALTRQYTALMETEGVSVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA A ++N +V +IGARRL T+MERV E++SF A D +T+ +DA++V ++ Sbjct: 362 EDGIAALAKTAADVNQSVENIGARRLYTIMERVFEELSFHAPDRTGETISVDADFVNENV 421 Query: 424 GDFPSETDMYHFIL 437 G + D+ ++L Sbjct: 422 GKLAASADLSRYVL 435 >gi|149912868|ref|ZP_01901402.1| heat shock protein HslVU, ATPase subunit HslU, putative [Roseobacter sp. AzwK-3b] gi|149813274|gb|EDM73100.1| heat shock protein HslVU, ATPase subunit HslU, putative [Roseobacter sp. AzwK-3b] Length = 435 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/434 (57%), Positives = 331/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRA A+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRATAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI R+ R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTRDYMREDVKSK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R++ A+ G+ A +TRE+FRKKLRDG + D I+++VAD S+ + DIPG Sbjct: 123 AHQQAEDRVIAAIAGEDARDSTREMFRKKLRDGLLDDTVIELDVADQSNPLGMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NL ++F K G GR + +M+V + Y L+ +E+D+L+D DTVH+ +++ VE Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRTVRKKMTVSESYEALISEEADKLLDDDTVHKTALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTEDVTVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SF+A D TV +DA +V ++ Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRAGDTVTVDAAFVDANL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELMKSADLSRYVL 435 >gi|163732950|ref|ZP_02140394.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis Och 149] gi|161393485|gb|EDQ17810.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis Och 149] Length = 435 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/434 (57%), Positives = 334/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI++ R+ RD+V+ Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNAISMTRDLMRDDVKAN 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A + AEER++ A+ G+ A NTRE+FRKKL+ G++ D I+++VADTS+ DIPG Sbjct: 123 AHLAAEERVISAIAGEDARENTREMFRKKLKSGDLDDTIIELDVADTSNPFPTMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G ++G++NL ++F K +G GR + +++V + Y L+ +E+D+L+D +TV+R +I VE Sbjct: 183 GGNMGMMNLGDIFGKALG-GRTTRKKLTVSQSYDVLIGEEADKLLDDETVNRAAIDSVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ A+ G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEKVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SFSA + +V+DA +V ++ Sbjct: 362 EDGIAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPERAGDEIVVDAAFVDENL 421 Query: 424 GDFPSETDMYHFIL 437 G TD+ ++L Sbjct: 422 GALAKSTDVSRYVL 435 >gi|86136743|ref|ZP_01055321.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] gi|85826067|gb|EAQ46264.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] Length = 437 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 256/436 (58%), Positives = 337/436 (77%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI RE R++V + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIVQTREFMREDVTTK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AE+R++DAL G+ A TREVFRKKL+ G++ D I+++VAD+S+ + N FDIPG Sbjct: 123 AQKAAEDRVIDALAGEDAREITREVFRKKLKSGQLDDALIELDVADSSNPMGNMFDIPGQ 182 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G ++G+LN+ L K MG GR + +M+V + Y L+ DE+D+L+D + V R +I+ V Sbjct: 183 PGGGNMGVLNIGNLLGKAMG-GRTVRRKMTVAESYEVLISDEADKLLDDEVVTRAAIESV 241 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIAS Sbjct: 242 EQSGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHV++P+DLLPE+QGR P+RV+L+SL+++DF ILT+T++ L LQY LMKTE + + Sbjct: 302 GAFHVAKPSDLLPELQGRLPIRVNLRSLSETDFVRILTETDNALTLQYTALMKTEEVEVT 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FTED I ALA +A +N +V +IGARRL TV+ERV E++SF+A D + V ++A +V Sbjct: 362 FTEDGIAALAKIAAEVNHSVENIGARRLYTVIERVFEELSFNAPDRGGEKVTVNASFVGK 421 Query: 422 HIGDFPSETDMYHFIL 437 H+G+ S +D+ ++L Sbjct: 422 HLGELASRSDLSRYVL 437 >gi|21328719|gb|AAM48725.1| heat shock protein HslVU, ATPase subunit HslU [uncultured marine proteobacterium] Length = 435 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/434 (57%), Positives = 329/434 (75%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+I+GQ DAKRAVA+A+RNRWRR+QLP +LRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRHIVGQNDAKRAVAVAMRNRWRRKQLPDELRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD +I + R+ R++VR + Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSSIAVTRDHMREDVRAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+++A+ G A TRE+FRKKLR GE+ D I++EVADTS+ +S D+PG Sbjct: 123 AKEAAEERVIEAIAGADARDATREMFRKKLRSGELDDTVIELEVADTSNPMSMLDLPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NL ++F K MG GR + +M+V Y L+ +E+D+L+D + V + +++ VE Sbjct: 183 GSQMGMMNLGDIFGKAMG-GRTSRKKMTVAASYDVLLGEEADKLLDDEIVTKAALKAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 SGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L+ L + DF IL++TE+ L LQY LM TE + + F+ Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRDLTEEDFIRILSETENALTLQYSALMSTEDVSVSFS 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA A +N +V +IGARRL TV+ERV E++SF+A D VVID YV H+ Sbjct: 362 EDGIKALAQAAAEVNRSVENIGARRLYTVIERVFEELSFAAPDQAGSEVVIDKAYVNKHL 421 Query: 424 GDFPSETDMYHFIL 437 TD+ ++L Sbjct: 422 DSLLQSTDLSRYVL 435 >gi|260429465|ref|ZP_05783442.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp. SE45] gi|260420088|gb|EEX13341.1| heat shock protein HslVU, ATPase subunit HslU [Citreicella sp. SE45] Length = 435 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/434 (55%), Positives = 337/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE R++V+ Sbjct: 63 KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIAMTREHMREDVKAA 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+++A+ GK A +TRE+FRKKLR+GE+ EI+++VA+T+S ++PG Sbjct: 123 AHKAAEDRVIEAIAGKDARDSTREMFRKKLRNGELDATEIELDVAETASPFPMMELPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G S+G++NLS++F K G GR + ++SV + Y L+++E+D+L+D + V + +++ VE Sbjct: 183 GQSMGMMNLSDIFGKAFG-GRTTRKKLSVGESYEVLIQEEADKLLDDEVVKKAALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV+L++L + DF ILT+T++ L QY LM TE +I++FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMATEEVIVEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 E+ I ALA +A +N +V +IGARRL TVMERV E++SF+A D +++ +D +V ++ Sbjct: 362 EEGIHALAKIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGESITVDGSFVETYL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELTRSADLSRYVL 435 >gi|260431950|ref|ZP_05785921.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter lacuscaerulensis ITI-1157] gi|260415778|gb|EEX09037.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter lacuscaerulensis ITI-1157] Length = 435 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/434 (57%), Positives = 331/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI RE R+EV+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLTDAAIVQTREFMREEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+++A+ G A TRE+FRKKL+ GE+ D I++E+ADTS+ + FDIPG Sbjct: 123 AHQAAEDRVIEAIAGADAREATREMFRKKLKSGELDDTVIELELADTSNPMPMFDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G++NL ++F K G GR K RM+V + Y L+ +E+D+L+D + V R ++ VE Sbjct: 183 GSQMGMMNLGDIFGKAFG-GRMVKRRMTVAESYDILIGEEADKLLDDEAVTRAALDSVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMGTENVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D I ALA +A +N +V +IGARRL TVMERV ED+SF+A D +V+DA++V ++ Sbjct: 362 DDGIAALARIAAEVNRSVENIGARRLYTVMERVFEDLSFAAPDKAGAEIVVDAQFVDDNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELTKSADLSRYVL 435 >gi|254487280|ref|ZP_05100485.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp. GAI101] gi|214044149|gb|EEB84787.1| heat shock protein HslVU, ATPase subunit HslU [Roseobacter sp. GAI101] Length = 435 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 254/434 (58%), Positives = 335/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + R+ R++V+ Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIIMTRDHMREDVKVS 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++DA+ G A TR++FRKKL+ GE+ ID+EV DTSS DIPG Sbjct: 123 AHKAAEERVIDAIAGADAREGTRDMFRKKLKAGELDATMIDLEVTDTSSPFPTMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G++NL +LF K MG GRK K R++V + Y L+ +E+D+L+D +TV+R +I VE Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRKVKKRLTVAESYEVLIGEEADKLLDDETVNRAAIDTVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG++ TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKYGAVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVTVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ I ALA +A ++N ++ +IGARRL TVMERV E++SF+A D +TVV+D ++V ++ Sbjct: 362 DEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFTAPDRSGETVVVDGDFVEKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELTRSTDLSRYVL 435 >gi|329891071|ref|ZP_08269414.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas diminuta ATCC 11568] gi|328846372|gb|EGF95936.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas diminuta ATCC 11568] Length = 435 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 264/434 (60%), Positives = 346/434 (79%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAG+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR V+ + Sbjct: 63 KTEIARRLARLAGSPFLKVEATKFTEVGYVGRDVDQIMRDLVESALVMVRDKRRSGVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP-GG 184 A AEERILDALVG + TRE FRKKLR GE+ DKEI+I +ADT+S + D+P GG Sbjct: 123 AEGQAEERILDALVGPGSQPATREAFRKKLRAGELDDKEIEIALADTTSPLQGLDMPGGG 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +VG+LNLSE+ K MG GR K ++++V+ L+ +ESD+L+D +++ ++++ + EN Sbjct: 183 GNVGLLNLSEMLGK-MGGGRTKTVKLTVRDALAPLVTEESDKLLDQESLTKEALLLAENE 241 Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR D G G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGA Sbjct: 242 GIVFLDEIDKVAARQDRGGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV LK+L + DF+ ILT+ E+NLI Q + L+ TEG+ L FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELKALTRDDFKRILTEPEANLIRQNQALLATEGVELVFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+++A+AD AV NSTV +IGARRLQTVMERVLE+ SF ASDL +T++ D + VR + Sbjct: 362 DDAVEAMADAAVAANSTVENIGARRLQTVMERVLEETSFKASDLSGQTLIFDGDKVREKV 421 Query: 424 GDFPSETDMYHFIL 437 GD D+ FIL Sbjct: 422 GDLAKNVDLSRFIL 435 >gi|84684626|ref|ZP_01012527.1| ATP-dependent protease ATP-binding subunit [Maritimibacter alkaliphilus HTCC2654] gi|84667605|gb|EAQ14074.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2654] Length = 435 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/434 (57%), Positives = 333/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI RE R++V+ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREWMREDVKSA 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A NAEER++ A+ G A TRE+FRKKLR GE+ D I+++V DT + FD+PG Sbjct: 123 AEHNAEERVISAVAGDQAREQTREMFRKKLRSGELDDTVIELDVQDTGGGMPMFDVPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G ++G++NLS++F K G GR + +M+V + Y LM +E+D+L+D + V++ +++ VE Sbjct: 183 GMNMGMMNLSDMFGKAFG-GRTVRKKMTVAESYEILMGEEADKLLDDEAVNKIALESVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIASGA Sbjct: 242 NGIVFIDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHMLFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVKVSFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N+TV +IGARRL TVMERV E++SF+A D + VV+D +V+ ++ Sbjct: 362 EDGIAALARIAAEVNTTVENIGARRLYTVMERVFEELSFTAPDKSGEEVVVDEAFVQKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELMQSTDVGRYML 435 >gi|163742597|ref|ZP_02149983.1| ATP-dependent protease ATP-binding subunit [Phaeobacter gallaeciensis 2.10] gi|161384182|gb|EDQ08565.1| ATP-dependent protease ATP-binding subunit [Phaeobacter gallaeciensis 2.10] Length = 436 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/435 (57%), Positives = 336/435 (77%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI RE RD+V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AEER++DA+ G A TR++FRKKL+ GE+ D I+++V+DTS+ + F+IPG Sbjct: 123 ARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G ++G++NL +LF K MG GR + +M+V Y L+ +E+D+L+D +TV + +++ VE Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ R G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L LQY L+ TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVTVSF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +LA +A +N TV +IGARRL TV+ERV E++SFSA D +TV +DA +VR + Sbjct: 362 TDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRKN 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ D+ ++L Sbjct: 422 LGELTKSADVSRYVL 436 >gi|217978698|ref|YP_002362845.1| ATP-dependent protease ATP-binding subunit HslU [Methylocella silvestris BL2] gi|254802312|sp|B8EM94|HSLU_METSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|217504074|gb|ACK51483.1| heat shock protein HslVU, ATPase subunit HslU [Methylocella silvestris BL2] Length = 437 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 263/436 (60%), Positives = 339/436 (77%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRR +L +RDE++PKNIL++GPTG G Sbjct: 3 DFSPREIVSELDRFIVGQHDAKRAVAIALRNRWRRLRLEGSMRDEVLPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA++AGAPF+KVE TKFTEIGYVGR+VEQI+RDLV+ AI++++E +R VR + Sbjct: 63 KTEISRRLAKMAGAPFLKVEATKFTEIGYVGRDVEQIVRDLVETAISMIKEDKRKLVRAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A + AE+RILDALVG A+ TR+ FRKKLR GE+ DKEI++E+A S + F++P Sbjct: 123 AELAAEDRILDALVGPGASPPTRDSFRKKLRAGELEDKEIEVEIAQGSGGAMPMFELPNM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA +G ++L ++F K G G K + RMSV+ L+ +E D+L+D D + R++I VE Sbjct: 183 PGAQIGAMSLGDMFGKAFGKGGKPR-RMSVKDAVEPLITEEGDKLMDQDVIVREAIVEVE 241 Query: 243 NYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 N GIVFLDE DKI R+ S G VSREGVQRDLLPL+EG++V TK+G + TDHILFIAS Sbjct: 242 NNGIVFLDEIDKICVREGSRGGADVSREGVQRDLLPLIEGANVPTKHGVVKTDHILFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVS+P+DLLPE+QGR P+RV L L + DFR ILTDTE++L+ QY+ LM+TEG+ L Sbjct: 302 GAFHVSKPSDLLPELQGRLPIRVELAPLTEDDFRRILTDTEASLLKQYEALMRTEGVELS 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT D+++ALA +A +NS+V +IGARRLQTVMERVL++ISFSA+D + + IDA YV Sbjct: 362 FTPDAVNALAKIAAQVNSSVENIGARRLQTVMERVLDEISFSATDRFGEKIEIDAAYVEQ 421 Query: 422 HIGDFPSETDMYHFIL 437 HIGD D+ FIL Sbjct: 422 HIGDLARNADLSRFIL 437 >gi|254462139|ref|ZP_05075555.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales bacterium HTCC2083] gi|206678728|gb|EDZ43215.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacteraceae bacterium HTCC2083] Length = 443 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/434 (56%), Positives = 337/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 11 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLV+ AI+ RE R++V+ + Sbjct: 71 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVENAISETREYMREDVKSK 130 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+++A+ G+ A TRE+FRKKLR G++ + I++E+ADTS+ +S F+IPG Sbjct: 131 AEAAAEERVIEAIAGEGARDATREMFRKKLRSGDLDNTVIELEIADTSNPMSGFEIPGQP 190 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+++G++N+ +LF K MG GR + +M+V + Y L+ DE+D+L+D ++V R +++ VE Sbjct: 191 GSNMGMMNIGDLFGKAMG-GRTTRKKMTVSESYDVLIGDEADKLLDDESVTRAALEAVEQ 249 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ R G VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA Sbjct: 250 NGIVFLDEIDKVCTRADARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 309 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM+TE +I+ FT Sbjct: 310 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYTALMQTEEVIVSFT 369 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D I ALA +A +N +V +IGARRL TV+ERV E++SF+A D + + +D+ +V ++ Sbjct: 370 DDGIAALAKIAAEVNQSVENIGARRLYTVLERVFEELSFTAPDRGGEEISVDSAFVETYL 429 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 430 GELSRSTDVSRYVL 443 >gi|163738007|ref|ZP_02145423.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter gallaeciensis BS107] gi|161388623|gb|EDQ12976.1| heat shock protein HslVU, ATPase subunit HslU [Phaeobacter gallaeciensis BS107] Length = 436 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/435 (57%), Positives = 336/435 (77%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD+AI RE RD+V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDIAIVQTREHMRDDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AEER++DA+ G A TR++FRKKL+ GE+ D I+++V+DTS+ + F+IPG Sbjct: 123 ARQAAEERVIDAIAGTDARDATRDMFRKKLKAGELDDTIIELDVSDTSNPMGGMFEIPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G ++G++NL +LF K MG GR + +M+V Y L+ +E+D+L+D +TV + +++ VE Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVANSYDVLIGEEADKLLDDETVTKAALESVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ R G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCTRQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L LQY L+ TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALLGTEEVNVSF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +LA +A +N TV +IGARRL TV+ERV E++SFSA D +TV +DA +VR + Sbjct: 362 TDDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRSGETVTVDAAFVRKN 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ D+ ++L Sbjct: 422 LGELTKSADVSRYVL 436 >gi|83942014|ref|ZP_00954476.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] gi|83847834|gb|EAP85709.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] Length = 435 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/434 (58%), Positives = 334/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE R++V+ Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKVS 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++DA+ GK A TR++FRKKL+ GE+ D I++EVADTSS DIPG Sbjct: 123 AHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G++NL +LF K MG GR K R+SV + Y L+ +E+D+L+D +TV+R +I+ VE Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D + + +D ++V ++ Sbjct: 362 DEGIQALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELTRSTDLSRYVL 435 >gi|83953063|ref|ZP_00961785.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] gi|83842031|gb|EAP81199.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] Length = 435 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 253/434 (58%), Positives = 334/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI + RE R++V+ Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDSAIVMTREYMREDVKVS 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++DA+ GK A TR++FRKKL+ GE+ D I++EVADTSS DIPG Sbjct: 123 AHKAAEERVVDAIAGKDAREGTRDMFRKKLKAGELDDTMIELEVADTSSPFPAMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G++NL +LF K MG GR K R+SV + Y L+ +E+D+L+D +TV+R +I+ VE Sbjct: 183 GGGMGMMNLGDLFGKAMG-GRTVKKRLSVAESYEVLISEEADKLLDDETVNRAAIEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYTALMGTEEVEVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ I ALA +A ++N ++ +IGARRL TVMERV E++SFSA D + + +D ++V ++ Sbjct: 362 DEGIKALAKIAADVNQSIENIGARRLYTVMERVFEELSFSAPDRTGEKITVDGDFVEKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELTRSTDLSRYVL 435 >gi|159045981|ref|YP_001534775.1| ATP-dependent protease ATP-binding subunit HslU [Dinoroseobacter shibae DFL 12] gi|189043909|sp|A8LPA9|HSLU_DINSH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157913741|gb|ABV95174.1| ATP-dependent HslUV protease [Dinoroseobacter shibae DFL 12] Length = 437 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/436 (56%), Positives = 329/436 (75%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLR+E+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDLREEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI + R+ R+EV+ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVENAITMTRDHMREEVKAN 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEER+++A+ G A TRE+FRKKL+ GE+ D I++EVADTS+ +S F+IPG Sbjct: 123 AHQAAEERVIEAIAGSDAREATREMFRKKLKAGELDDTVIELEVADTSNPMSMFEIPGQP 182 Query: 186 SV----GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 + G ++L ELF K G GR + +++V + Y L+ +E+D+L+D + V+R ++ V Sbjct: 183 GMNPMGGGMDLVELFGKAFG-GRTVRKKLTVAQSYEVLISEEADKLLDDEAVNRSAVTAV 241 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIAS Sbjct: 242 EQNGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHVLFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L+ L + DF ILT+T++ L LQY LM TE + + Sbjct: 302 GAFHIAKPSDLLPELQGRLPIRVELRPLTEQDFVRILTETDNALTLQYTALMGTESVTVT 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 F ED I ALA +A +N +V +IGARRL TVMERV E++SF+A D + +DAE+V Sbjct: 362 FAEDGIAALARIAAEVNQSVENIGARRLYTVMERVFEELSFAAPDRSGDEITVDAEFVEA 421 Query: 422 HIGDFPSETDMYHFIL 437 ++G +TD+ ++L Sbjct: 422 NLGALTRDTDLSRYVL 437 >gi|99082691|ref|YP_614845.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria sp. TM1040] gi|123252063|sp|Q1GCN3|HSLU_SILST RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|99038971|gb|ABF65583.1| heat shock protein HslVU ATPase subunit HslU [Ruegeria sp. TM1040] Length = 436 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 245/435 (56%), Positives = 340/435 (78%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTREHMREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AE+R+L+A+ G A +T E+FRKKL+ GE+ D I++++ADTS+ + F+IPG Sbjct: 123 AHKAAEDRVLEAIAGTDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G++NL +LF K MG GR + +++V + Y L+ +E+D+L+D +TV++ +++ VE Sbjct: 183 PGANMGMMNLGDLFGKAMG-GRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L QY+ L+ TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVTF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I ALA +A +N TV +IGARRL TVMERV E++SF+A D + +++D +V + Sbjct: 362 TKDGIHALAQIAAEVNHTVENIGARRLYTVMERVFEEMSFAAPDRSGEEIIVDEPFVTKN 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ TD+ ++L Sbjct: 422 LGELTKSTDLSRYVL 436 >gi|126734393|ref|ZP_01750140.1| heat shock protein HslVU, ATPase subunit HslU, putative [Roseobacter sp. CCS2] gi|126717259|gb|EBA14123.1| heat shock protein HslVU, ATPase subunit HslU, putative [Roseobacter sp. CCS2] Length = 435 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 252/434 (58%), Positives = 330/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVD AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R++ A+ G A TRE+FRKKL+ GE+ + I++E+ DTS+ + F+IPG Sbjct: 123 ARAAAEDRVITAVAGTDARDTTREMFRKKLKSGELDNTVIELELTDTSNPMGGFEIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G G++NL +LF K MG GR K +M+V Y L+ DE+D+L+D +TV + +++ VE Sbjct: 183 GGMGGMMNLGDLFGKAMG-GRTVKKQMTVADSYEALVADEADKLLDDETVTKAALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LMKTE + + FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEDDFVRILTETDNALTLQYSALMKTEEVTVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 E+ I ALA +A +N +V +IGARRL TV+ERV ED+SF+A D + IDA +V H+ Sbjct: 362 ENGIKALAKIAAEVNESVENIGARRLYTVIERVFEDLSFNAPDRAGDDIAIDAAFVEEHL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELSRSTDISRYVL 435 >gi|56698693|ref|YP_169070.1| ATP-dependent protease ATP-binding subunit HslU [Ruegeria pomeroyi DSS-3] gi|62286712|sp|Q5LLP0|HSLU_SILPO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56680430|gb|AAV97096.1| ATP-dependent hsl protease, ATP-binding subunit HslU [Ruegeria pomeroyi DSS-3] Length = 435 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/434 (56%), Positives = 329/434 (75%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI R+ RDEVR + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAIVQTRDYMRDEVRAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R++ A+ G+ A TRE+FRKKL+ GE+ D I++EVAD ++ + F+IPG Sbjct: 123 AHKAAEDRVITAIAGEDAREGTREMFRKKLKSGELDDTVIELEVADGANPMPMFEIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G ++G++NL +LF K +GR + ++ V Y L+ +E+D+L+D + V++ +++ VE Sbjct: 183 GGNMGMMNLGDLFGKAF-AGRTTRKKLRVADSYEILIGEEADKLLDDELVNKTALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARSDARGADVSREGVQRDLLPLIEGTTVSTKYGPIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L LQY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTENVAVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 D I ALA +A +N +V +IGARRL TVMERV E++SF+A D + V +DA +V ++ Sbjct: 362 PDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRSGEAVTVDAGFVDTNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 422 GELTRSTDLSRYVL 435 >gi|304320679|ref|YP_003854322.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] gi|303299581|gb|ADM09180.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] Length = 435 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/434 (56%), Positives = 327/434 (75%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +++PREIVSELDR+I+GQ +AKRAVA+ALRNRWRRQQLP LRDE+ PKNIL++GPTGVG Sbjct: 3 SYTPREIVSELDRFIVGQTEAKRAVAVALRNRWRRQQLPDHLRDEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+L GAPF+KVE TKFTE+GYVGR+V+QIIRDL +V++ ++RE RR++V+ + Sbjct: 63 KTEISRRLAKLVGAPFLKVEATKFTEVGYVGRDVDQIIRDLTEVSMQLIRERRREQVKSR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+L ALVG+ A+ TR FRKKL GE+ D EI+I++ D+ FDIPG Sbjct: 123 AHDAAEERVLSALVGENASEATRASFRKKLHAGELDDAEIEIDLQDSGKGAPMFDIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA +G++NLS++ K +G G+ K +M V+ Y L+ +ESD+L+D D V ++++ VEN Sbjct: 183 GAQMGMINLSDIMGKALG-GQTKTRKMKVKDVYEPLIAEESDKLLDDDQVAQEALAAVEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ G VSREGVQRDLLPL+EGS VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKVAKSSDRGGADVSREGVQRDLLPLIEGSVVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L +L DF ILTDTE++L QY L++TEG+ + FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELSALTVDDFVSILTDTEASLPKQYTALLETEGLTVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D I LA+ A +N+ V +IGARRL T++ERVLE++SF A++ +TV IDA +V + Sbjct: 362 DDGIVRLAEKAAEVNANVENIGARRLSTILERVLEEVSFDAAERAGETVTIDAAFVDTRL 421 Query: 424 GDFPSETDMYHFIL 437 D+ +IL Sbjct: 422 EGLAGNADLSKYIL 435 >gi|144898075|emb|CAM74939.1| heat shock protein HslVU, ATPase subunit HslU [Magnetospirillum gryphiswaldense MSR-1] Length = 442 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 255/437 (58%), Positives = 341/437 (78%), Gaps = 6/437 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP LR+E++PKNIL++GPTGVGK Sbjct: 6 FSPREIVSELDRFIVGQNDAKRAVAIALRNRWRRQQLPDALREEVLPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV++AI ++RE R +V +A Sbjct: 66 TEIARRLARLAQAPFLKVEATKFTEVGYVGRDVEQIVRDLVEIAIGMMRERLRKQVVPKA 125 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG-- 183 + AEER+LD LVG+TA+++TR+ FRK LR+G + +E++I+VAD+ + + +FDIPG Sbjct: 126 ELAAEERLLDVLVGETASADTRQKFRKMLREGALDGREVEIQVADSGAGAMPSFDIPGMP 185 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ VG++NLS++ K G GR K +MSV L+ +ESD+L+D D V +D+I VEN Sbjct: 186 GSQVGMINLSDMLGKAFGGGRTKPRKMSVPDALAALLAEESDKLLDQDAVVKDAIWAVEN 245 Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 +GIVFLDE DKI AR S + +G VSREGVQRDLLPL+EG++VSTK+G++ TDHILFIAS Sbjct: 246 HGIVFLDEIDKICARSSEHHVGGDVSREGVQRDLLPLIEGTTVSTKHGNVKTDHILFIAS 305 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L++L + DF ILT+ E++LI QY L+ TE ++L Sbjct: 306 GAFHLAKPSDLLPELQGRLPIRVELQALTRDDFVRILTEPEASLIKQYVALLGTEEVLLK 365 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 F + +I A+AD+A +N +V +IGARRL TV+ER+LE+ISF+A D T + I A V Sbjct: 366 FDDGAIAAIADLAAEINRSVENIGARRLHTVLERLLEEISFTAPDQSPGTEIAITAAMVN 425 Query: 421 LHIGDFPSETDMYHFIL 437 +G + D+ FIL Sbjct: 426 ERVGALAKKADLAKFIL 442 >gi|254475576|ref|ZP_05088962.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11] gi|214029819|gb|EEB70654.1| heat shock protein HslVU, ATPase subunit HslU [Ruegeria sp. R11] Length = 436 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/435 (56%), Positives = 337/435 (77%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQTDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVDVAI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDVAIVQTREHMREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AE+R+L A+ G+ A TRE+FRKKL+ GE+ D I++++ DTS+ + F+IPG Sbjct: 123 ARTAAEDRVLTAIAGEDARDATREMFRKKLKAGELDDTVIELDITDTSNPMGGMFEIPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G ++G++NL +LF K MG GR + +M+V + Y L+ +E+D+L+D +TV + +++ VE Sbjct: 183 PGGNMGMMNLGDLFGKAMG-GRTTRKKMTVAQSYDVLIGEEADKLLDDETVTKAALESVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCARQDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L LQY L+ TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEDDFVRILTETDNALTLQYTALLGTEDVTVSF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +LA +A +N TV +IGARRL TV+ERV E++SFSA D + + +DA++VR + Sbjct: 362 TKDGIASLAKIAAEVNQTVENIGARRLYTVIERVFEELSFSAPDRAGEEIKVDADFVRKN 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ D+ ++L Sbjct: 422 LGELTKSADVSRYVL 436 >gi|259417743|ref|ZP_05741662.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp. TrichCH4B] gi|259346649|gb|EEW58463.1| heat shock protein HslVU, ATPase subunit HslU [Silicibacter sp. TrichCH4B] Length = 436 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/435 (56%), Positives = 339/435 (77%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QLP DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLPDDLRDEVHPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI R+ R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDTAIVQTRDHMREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AE+R+L+A+ G A +T E+FRKKL+ GE+ D I++++ADTS+ + F+IPG Sbjct: 123 AHQAAEDRVLEAIAGSDARESTLEMFRKKLKAGELDDTVIELDIADTSNPMGGMFEIPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G++NL +LF K MG GR + +++V + Y L+ +E+D+L+D +TV++ +++ VE Sbjct: 183 PGANMGMMNLGDLFGKAMG-GRTTRKKLTVAESYDVLIGEEADKLLDDETVNKAALEAVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L QY+ L+ TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTRQYEALLGTEKVKVTF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T++ I ALA +A +N T+ +IGARRL TVMERV E+ISF+A D + V +D +V + Sbjct: 362 TKEGIHALAQIAAEVNHTIENIGARRLYTVMERVFEEISFAAPDRSGEEVTVDEAFVNKN 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ TD+ ++L Sbjct: 422 LGELTKSTDLSRYVL 436 >gi|329848325|ref|ZP_08263353.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis biprosthecum C19] gi|328843388|gb|EGF92957.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis biprosthecum C19] Length = 432 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/432 (56%), Positives = 336/432 (77%), Gaps = 2/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIG DAK+AVA+ALRNRWRR+ A +RDE+ PKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRHIIGHNDAKKAVAVALRNRWRRKATDASIRDEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ A+ ++++ R VR + Sbjct: 63 KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAMLMIKDKNRAGVRAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEER++DALVG TA TR+ FRKKLR+ E+ DKE+++++ +T S I +IPG A Sbjct: 123 AEAAAEERLIDALVGNTAGQATRDSFRKKLRNNELDDKEVELQLTETGSPIGMIEIPGQA 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 NL ++ SK MG GRKK ++ SV+ +P L+ +ESDRL+D + V +++ + EN G Sbjct: 183 GNN-FNLGDMLSKAMG-GRKKTVKTSVKAAWPTLIAEESDRLLDQEAVASEALSLAENEG 240 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ +R G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 241 IVFLDEIDKVASRSERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 300 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LMKTEG+ L+F + Sbjct: 301 VAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMKTEGVTLEFDDG 360 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +I +A A ++N+ V +IGARRL TV+E+V+E++S++ASD+ +TV+IDA+YV+ +GD Sbjct: 361 AIAEMAAAAASVNAKVENIGARRLHTVIEKVMEELSYAASDMAGQTVLIDADYVKRRLGD 420 Query: 426 FPSETDMYHFIL 437 ++ D+ +IL Sbjct: 421 IATDADLSRYIL 432 >gi|254464268|ref|ZP_05077679.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales bacterium Y4I] gi|206685176|gb|EDZ45658.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacterales bacterium Y4I] Length = 435 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/434 (56%), Positives = 335/434 (77%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI RE R++V+ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSAIAQTREYMREDVKAN 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R+++A+ G A TRE+FRKKL+ GE+ D I+++VADTS+ + F+IPG Sbjct: 123 ARKAAEDRVVEAIAGSDAREATREMFRKKLKAGELDDTVIELDVADTSNPMGMFEIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G ++G+LNL +LF K MG GR + +++V + Y L+ +E+D+L+D +TV R +++ VE Sbjct: 183 GGNMGMLNLGDLFGKAMG-GRTIRKKLTVAESYEVLIGEEADKLLDDETVTRIALESVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV+L++L + DF ILT+T++ L QY LM TE + + FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVNLRALTEEDFVRILTETDNALTRQYTALMGTEEVEVAFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TVMERV E++SF+A D ++V +DA +V ++ Sbjct: 362 EDGIAALAKIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGESVTVDAAFVTKNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ +D+ ++L Sbjct: 422 GELGRSSDLSRYVL 435 >gi|126738518|ref|ZP_01754223.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] gi|126720317|gb|EBA17023.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] Length = 436 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 253/435 (58%), Positives = 341/435 (78%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDL D AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAILQTREYMREDVKTK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIPG- 183 A AE+R+++A+ G+ A TRE+FRKKL+ GE+ D EI++++AD+S+ + N F++PG Sbjct: 123 AHKAAEDRVIEAIAGEDAREATREMFRKKLKTGELDDTEIELDLADSSNPMGNMFEVPGQ 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GA++G+LNL ++F K MG GR + RMSV + Y L+ +E+D+L+D + V R +++ VE Sbjct: 183 PGANMGMLNLGDIFGKAMG-GRTIRKRMSVAQSYEVLIGEEADKLLDDEQVTRAALESVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G I TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTTVSTKHGPIKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L++ DF ILT+T++ L LQY LM TE + ++F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALSEEDFVRILTETDNALTLQYTALMGTEEVEVEF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED I ALA +A +N +V +IGARRL TV+ERV E++SF+A D + + I+AEYV H Sbjct: 362 TEDGIAALAKIAAEVNQSVENIGARRLYTVIERVFEELSFTAPDRSGEKIFINAEYVGKH 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ TD+ ++L Sbjct: 422 LGELSKSTDVSRYVL 436 >gi|297180838|gb|ADI17043.1| ATP-dependent protease hslVU (clpYQ), ATPase subunit [uncultured alpha proteobacterium HF0010_30A23] Length = 437 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 242/435 (55%), Positives = 327/435 (75%), Gaps = 5/435 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+I+GQ DAKRAVA+ALRNRWRRQQL +LR+E++PKNIL++GPTG G Sbjct: 5 NFSPREIVSELDRFIVGQADAKRAVAVALRNRWRRQQLADNLREEVLPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++AI RE +RD V+ + Sbjct: 65 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVELAITTTREQQRDAVKAK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A I AE+R++D L G A ++T++ FRK LR+G++ D+E+++E+ D S + DIPG Sbjct: 125 AEIIAEDRLIDVLTGAEANNDTKQKFRKMLREGKLDDREVEVELNDKSGGGFPSMDIPGM 184 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G+ +G++N+ E+ + RK K ++ V + Y +L+ +E+D LID + + R +IQ VE Sbjct: 185 PGSQMGMINIGEMLGGL--GQRKVKRKLKVNEAYEQLVEEEADNLIDQEDLTRTAIQRVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI G VSREGVQRDLLPL+EG++V+TKYG + TDH+LFI SG Sbjct: 243 NDGIVFLDEIDKIAVNSEVRGGSVSREGVQRDLLPLIEGTTVTTKYGPVKTDHVLFICSG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+S+P+DLLPE+QGR P+RV L L + D + IL + E++L+ QY L+ TEG+ LDF Sbjct: 303 AFHLSKPSDLLPELQGRMPIRVELSPLTRDDLKRILVEPENSLVKQYVALLATEGVTLDF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 + SIDALAD++ +N TV +IGARRL TVMER+LE+ISFSA D +T+ I + VR Sbjct: 363 NDGSIDALADLSAEINQTVENIGARRLATVMERLLEEISFSAPDRSGETIQITEDKVRSE 422 Query: 423 IGDFPSETDMYHFIL 437 +G+ + D+ FIL Sbjct: 423 VGELAKDADLSRFIL 437 >gi|114769762|ref|ZP_01447372.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] gi|114549467|gb|EAU52349.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] gi|161170258|gb|ABX59228.1| ATP-dependent protease HslVU ClpYQ ATPase subunit [uncultured marine bacterium EB000_55B11] gi|297183787|gb|ADI19910.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 434 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 235/433 (54%), Positives = 330/433 (76%), Gaps = 2/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELDR+IIGQ DAKR+VA+ALRNRWRR +L D+RDE+ PKNIL++GPTGVG Sbjct: 3 NLTPREIVSELDRFIIGQNDAKRSVAVALRNRWRRNKLDDDIRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI +++E++R++V Sbjct: 63 KTEISRRLAKLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIVMIKENKREKVNAG 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF-DIPGG 184 A NAE R+LDAL G A TR+VFRKKLR+G + DKEI++++ DT++ + DIPG Sbjct: 123 AYNNAENRVLDALCGSDAREQTRDVFRKKLREGLLDDKEIELDLTDTTNPMGGMVDIPGQ 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +G++N+ E+F K MG GR K ++ + Y L+ +E+D+L+D + V +++++ VE Sbjct: 183 PGMGMMNIGEIFGKAMG-GRTIKRKIKIADSYKILIDEEADKLVDQEAVTKEAVEAVEAN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DK+ A+ G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF Sbjct: 242 GIVFLDEIDKVCAKTDARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 301 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TE + + FT+ Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEKDFVRILTETDNALTRQYSALMATENVDVSFTK 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 I ALA +A +N ++ +IGARRL T++ERV E++SF+A D +++ +D+++V H+G Sbjct: 362 GGIAALAKIAAEVNESIENIGARRLHTIIERVFEELSFTAPDRSGESIKVDSKFVEKHLG 421 Query: 425 DFPSETDMYHFIL 437 + D+ ++L Sbjct: 422 ELARSNDLSRYVL 434 >gi|307292834|ref|ZP_07572680.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium chlorophenolicum L-1] gi|306880900|gb|EFN12116.1| heat shock protein HslVU, ATPase subunit HslU [Sphingobium chlorophenolicum L-1] Length = 435 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 241/438 (55%), Positives = 329/438 (75%), Gaps = 4/438 (0%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK+ N +P+ IV+ LD +IIGQ DAKRAVA+ALRNRWRRQ+L ADLRDE+ PKNIL++G Sbjct: 1 MKMNDNLTPKAIVAALDAHIIGQADAKRAVAVALRNRWRRQRLAADLRDEVTPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+ Sbjct: 61 PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 VRE AS A R+LDAL GK A+ TR FR+++ + +++D E+++EVAD+ S + Sbjct: 121 AVREAASEAAMTRLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPS--MPME 178 Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 IPG G +G++NLS++ SK G +KK+ ++ V + + +L+ +E D+ +D D V R +I Sbjct: 179 IPGMGGQIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAIN 238 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DKI D G VSREGVQRDLLPL+EG++VSTKYG + TDHILFI Sbjct: 239 SAEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFI 297 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFHV++P+DLLPE+QGR P+RV LK+L + DF IL+DT+++L+ QY+ L+ TEG+ Sbjct: 298 ASGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVT 357 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +D T D I A+A +A +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV Sbjct: 358 VDLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYV 417 Query: 420 RLHIGDFPSETDMYHFIL 437 + TD+ ++L Sbjct: 418 EKQLAVVARNTDLSKYVL 435 >gi|294011680|ref|YP_003545140.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium japonicum UT26S] gi|292675010|dbj|BAI96528.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Sphingobium japonicum UT26S] Length = 435 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 241/438 (55%), Positives = 328/438 (74%), Gaps = 4/438 (0%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK+ N +P+ IVS LD +IIGQ DAKRAVA+ALRNRWRRQ+L DLRDE+ PKNIL++G Sbjct: 1 MKMNDNLTPKAIVSALDAHIIGQADAKRAVAVALRNRWRRQRLSPDLRDEVTPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTG GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+ Sbjct: 61 PTGCGKTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRRE 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 VRE AS A R+LDAL GK A+ TR FR+++ + +++D E+++EVAD+ S + Sbjct: 121 AVREAASEAAMARLLDALTGKEASEATRLSFRQRIENNQMNDVEVEVEVADSPS--MPME 178 Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 IPG G +G++NLS++ SK G +KK+ ++ V + + +L+ +E D+ +D D V R +I Sbjct: 179 IPGMGGQIGMINLSDMMSKAFGQQQKKRRKLRVAEAWDKLVEEEQDKRLDQDDVARVAIN 238 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DKI D G VSREGVQRDLLPL+EG++VSTKYG + TDHILFI Sbjct: 239 SAEQNGIVFIDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPLKTDHILFI 297 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFHV++P+DLLPE+QGR P+RV LK+L + DF IL+DT+++L+ QY+ L+ TEG+ Sbjct: 298 ASGAFHVAKPSDLLPELQGRLPIRVELKALTEDDFVSILSDTKASLVAQYRALLATEGVT 357 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +D T D I A+A +A +NS V +IGARRLQTVME++LED+SF A D Q +T+++DA YV Sbjct: 358 VDLTPDGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRQGETLLVDAAYV 417 Query: 420 RLHIGDFPSETDMYHFIL 437 + TD+ ++L Sbjct: 418 EKQLSAVARNTDLSKYVL 435 >gi|126460959|ref|YP_001042073.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides ATCC 17029] gi|166221600|sp|A3PG35|HSLU_RHOS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|126102623|gb|ABN75301.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter sphaeroides ATCC 17029] Length = 433 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI R R++V+ + Sbjct: 63 KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A+ AE+R+++A+ G+ A TRE+FR KL+ GE+ + I+I+VADTS+ + D G Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G++NL E+F K G GR ++ +M+V + + LM +E+D+L+D + V +++ V+ G Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L++L + DF IL++T++ L LQYK LM+TE + + FTED Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF A D + V +DA YV ++G+ Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFQAPDRSGEEVTVDAAYVEKNLGE 421 Query: 426 FPSETDMYHFIL 437 +D+ ++L Sbjct: 422 LARSSDLSRYVL 433 >gi|254705083|ref|ZP_05166911.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv. 3 str. 686] gi|261755785|ref|ZP_05999494.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis bv. 3 str. 686] gi|261745538|gb|EEY33464.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brucella suis bv. 3 str. 686] Length = 356 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/353 (66%), Positives = 301/353 (85%), Gaps = 4/353 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+IIGQ+DAKRAVAIALRNRWRRQQL +R+E+MPKNIL++GPTGVG Sbjct: 3 NFSPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMREEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPF+KVE TKFTE+GYVGR+VEQIIRDLV++AI +VRE RR++V+ + Sbjct: 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A +NAEER+LDALVGKTA+ TR+ FRKKLR+GE+ DKEI+IEV+D+ + NF+IPG Sbjct: 123 AHLNAEERVLDALVGKTASPATRDSFRKKLRNGEMDDKEIEIEVSDSGAS-PNFEIPGMP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LN+S++ K MG GR K + +V+ YP L+ DESD+L+D D + ++++++ E+ Sbjct: 182 GANIGVLNISDMLGKAMG-GRTKTRKTTVKDSYPILINDESDKLLDQDQIVQEALRVSED 240 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI AR+ G+G GVSREGVQRDLLPLVEG++V+TKYG + TDHILFI SGA Sbjct: 241 EGIVFIDEIDKIAAREGGSGAGVSREGVQRDLLPLVEGTTVATKYGPVKTDHILFITSGA 300 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 FHVS+P+DLLPE+QGR P+RV L +L + DFR ILT+TE++LI QY LM+TE Sbjct: 301 FHVSKPSDLLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYIALMETE 353 >gi|221641023|ref|YP_002527285.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides KD131] gi|254802315|sp|B9KRH0|HSLU_RHOSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|221161804|gb|ACM02784.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter sphaeroides KD131] Length = 433 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI R R++V+ + Sbjct: 63 KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A+ AE+R+++A+ G+ A TRE+FR KL+ GE+ + I+I+VADTS+ + D G Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G++NL E+F K G GR ++ +M+V + + LM +E+D+L+D + V +++ V+ G Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKAAALEAVQQNG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L++L + DF IL++T++ L LQYK LM+TE + + FTED Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF A D + V +DA YV ++G+ Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421 Query: 426 FPSETDMYHFIL 437 +D+ ++L Sbjct: 422 LARSSDLSRYVL 433 >gi|126724539|ref|ZP_01740382.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2150] gi|126705703|gb|EBA04793.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2150] Length = 435 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/434 (56%), Positives = 332/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELDR++IGQ DAKRAVA+ALRNRWRR QL DL+ E+ PKNIL++GPTGVG Sbjct: 3 NLTPREIVSELDRFVIGQNDAKRAVAVALRNRWRRNQLSDDLKAEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI+RDLVD AI++ RE+ R+EV Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIVRDLVDSAISMTRENMREEVNAN 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+LDA+ G+ + TR++FR+KLR GE+ EI+++VA+T+ FDIPG Sbjct: 123 ARAAAEERVLDAIAGENSREGTRDMFRRKLRAGELDSTEIELDVAETAKGSPLFDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ +G+LNL ++F K +G +K +M+V + Y L+ +E+D+L+D +TV R ++ VE Sbjct: 183 GSQMGMLNLQDMFGKALGQQTSRK-KMTVAESYDLLIGEEADKLLDDETVTRLAMASVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG+ VSTK+G + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKVCARSDARGGDVSREGVQRDLLPLIEGTVVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L ++DF ILT+T++ L LQY LM TE + ++FT Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTENDFVRILTETDNALTLQYTALMATEEVAVEFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ I ALA +A ++N +V +IGARRL TV+ERV ED+SF+A D +TV +DA +V H+ Sbjct: 362 DEGIAALAKIAADVNESVENIGARRLYTVLERVFEDLSFNAPDQNGETVKVDAAFVDKHL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELTKSADLSRYVL 435 >gi|255261958|ref|ZP_05341300.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp. R2A62] gi|255104293|gb|EET46967.1| heat shock protein HslVU, ATPase subunit HslU [Thalassiobium sp. R2A62] Length = 435 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 244/434 (56%), Positives = 326/434 (75%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI RE+ RD+V+ + Sbjct: 63 KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDAAIIQTRENMRDDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+R++ A+ G+ A +T+ +FRKKL+ GE+ I++E+ DTS+ + +IPG Sbjct: 123 AHKAAEDRVVAAIAGEDARESTQNMFRKKLKTGELDKTIIELELTDTSNPMKGMEIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G G++N+ ++F K G GR K RM+V + Y L+ +E+D+L+D +TV R +++ VE Sbjct: 183 GQMGGMMNIGDIFGKAFG-GRTVKKRMTVSESYDVLISEEADKLLDDETVTRAALEAVEQ 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G+I TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARADARGGDVSREGVQRDLLPLIEGTTVSTKHGAIKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV L++L +SDF ILT+T++ L QY LM TE + + F Sbjct: 302 FHIAKPSDLLPELQGRLPIRVELRALTESDFIRILTETDNALTRQYTALMGTEDVTVTFK 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I ALA +A +N +V +IGARRL TV+ERV E++SFSA D V ID +V H+ Sbjct: 362 EDGIAALARIAAEVNESVENIGARRLYTVLERVFEELSFSAPDRSGDEVTIDHAFVEEHL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELAKSADLSRYVL 435 >gi|77462070|ref|YP_351574.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides 2.4.1] gi|123744260|sp|Q3J6B1|HSLU_RHOS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|77386488|gb|ABA77673.1| Heat shock protein HslVU, ATPase subunit [Rhodobacter sphaeroides 2.4.1] Length = 433 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 327/432 (75%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI R R++V+ + Sbjct: 63 KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A+ AE+R+++A+ G+ A TRE+FR KL+ GE+ I+I+VADTS+ + D G Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDSTVIEIDVADTSNPMQMLDPTGQG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G++NL E+F K G GR ++ +M+V + + LM +E+D+L+D + V +++ V+ G Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L++L + DF IL++T++ L LQYK LM+TE + + FTED Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTED 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF A D + V +DA YV ++G+ Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421 Query: 426 FPSETDMYHFIL 437 +D+ ++L Sbjct: 422 LARSSDLSRYVL 433 >gi|296533581|ref|ZP_06896149.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas cervicalis ATCC 49957] gi|296266089|gb|EFH12146.1| ATP-dependent hsl protease ATP-binding subunit HslU [Roseomonas cervicalis ATCC 49957] Length = 445 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 238/436 (54%), Positives = 327/436 (75%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIVSELDR+IIGQ +AKRAVAIALRNRWRRQQLP +R+E++PKNIL++GPTG G Sbjct: 11 NLSPREIVSELDRFIIGQHEAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+++I RE R EV+ + Sbjct: 71 KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEISITRTREVARKEVQAK 130 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI-SNFDIPGG 184 A + AEER++ ALVG+ A+ TR FR+ LR+G + KE++++VAD + D+PG Sbjct: 131 AELAAEERLITALVGEGASGETRMKFRRMLREGSLEQKEVEVQVADQGPAAGAAMDVPGM 190 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 + N+ E+ K+ G ++ + +M+V + L +DE+DRL+D + + RD++ EN Sbjct: 191 PPGQMANIQEMMGKMFGRPQRAR-KMTVAEARRALTQDEADRLLDQEKLTRDAVAHAENN 249 Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 GIVF+DE DK+ AR S +G VSREGVQRDLLPL+EG++V+TK+G + TDHILF+AS Sbjct: 250 GIVFVDEIDKVCARSSDSGFRGGDVSREGVQRDLLPLIEGTTVATKHGPVKTDHILFVAS 309 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L +L + DFR ILT+ E +L QY L+ TEG+ L Sbjct: 310 GAFHIAKPSDLLPELQGRLPIRVELGALTRDDFRRILTEPEHSLAKQYVALLSTEGVALQ 369 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 TED+I+A+AD+A ++N+ V +IGARRL TV+E++LE+ISFSASD +TV +DA YV+ Sbjct: 370 LTEDAIEAIADLAADINARVENIGARRLATVLEKLLEEISFSASDRHGETVRVDAAYVKE 429 Query: 422 HIGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 430 KVAPLAASADLSRFIL 445 >gi|332559997|ref|ZP_08414319.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides WS8N] gi|332277709|gb|EGJ23024.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides WS8N] Length = 433 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/432 (55%), Positives = 328/432 (75%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI R R++V+ + Sbjct: 63 KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A+ AE+R+++A+ G+ A TRE+FR KL+ GE+ + I+I+VADTS+ + D G Sbjct: 123 AAKAAEDRVIEAVAGRDAREQTREMFRGKLKRGELDNTVIEIDVADTSNPMQMLDPTGQG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G++NL E+F K G GR ++ +M+V + + LM +E+D+L+D + V +++ V+ G Sbjct: 183 QMGMMNLGEIFGKAFG-GRTQRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQQNG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L++L + DF IL++T++ L LQY+ LM+TE + + FTED Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTLQYRALMQTEKVGITFTED 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF A D + V +DA YV ++G+ Sbjct: 362 GIAALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421 Query: 426 FPSETDMYHFIL 437 +D+ ++L Sbjct: 422 LARSSDLSRYVL 433 >gi|83950789|ref|ZP_00959522.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens ISM] gi|83838688|gb|EAP77984.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens ISM] Length = 435 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 245/434 (56%), Positives = 332/434 (76%), Gaps = 3/434 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ++AKRAVA+ALR+RWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKEAKRAVAVALRSRWRRKQLSEDLRDEVFPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLVD AI + R+ R++V+ + Sbjct: 63 KTEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIVRDLVDSAIAMTRDHMREDVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++ A+ G+ A TRE+FR+KL+ GE+ D I++++ADTS+ DIPG Sbjct: 123 AHHAAEERVISAIAGEDAREGTREMFRQKLKKGELDDTMIELDLADTSNPFGMMDIPGQP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G +G+LNL ++F K +G GR K+ RMSV + Y L+ +E+D+L+D +TV R +I+ VE Sbjct: 183 GGQMGMLNLGDMFGKALG-GRTKRQRMSVAESYEILIGEEADKLLDDETVTRAAIEAVEE 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 242 NGIVFLDEIDKVCARADARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FHV++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY+ LM TE + + FT Sbjct: 302 FHVAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTRQYEALMSTENLTVRFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ED I A+A +A +N +V +IGARRL TVMERV E++SF A D ++ +DA +V ++ Sbjct: 362 EDGIAAIARIAAEVNRSVENIGARRLYTVMERVFEELSFVAPDRSGDSITVDAGFVEDNL 421 Query: 424 GDFPSETDMYHFIL 437 G+ D+ ++L Sbjct: 422 GELARSADLSRYVL 435 >gi|146278980|ref|YP_001169139.1| ATP-dependent protease ATP-binding subunit HslU [Rhodobacter sphaeroides ATCC 17025] gi|166221601|sp|A4WWS0|HSLU_RHOS5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145557221|gb|ABP71834.1| heat shock protein HslVU, ATPase subunit HslU [Rhodobacter sphaeroides ATCC 17025] Length = 433 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 324/432 (75%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL D+RDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLSDDIRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+V+ IIRDLVD AI R R++V+ + Sbjct: 63 KTEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLVDAAIVETRARMREDVKSR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AE+R+++A+ G+ A TRE+FR KL+ GE+ I++EVADTS+ + D G Sbjct: 123 AVKAAEDRVIEAIAGRDAREQTREMFRGKLKRGELDATVIEVEVADTSNPMQMLDPTGQG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G++NL E+F K G GR + +M+V + + LM +E+D+L+D + V +++ V+ G Sbjct: 183 QMGMMNLGEIFGKAFG-GRTTRRKMTVAESHDILMNEEADKLLDDEVVKATALEAVQENG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFIDEIDKVCARSDMRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L++L + DF IL++T++ L QYK LMKTE + + FTE+ Sbjct: 302 IAKPSDLLPELQGRLPIRVELRALTEEDFVRILSETDNALTRQYKALMKTEKVGITFTEE 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF A D + V +DA YV ++G+ Sbjct: 362 GIKALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSGEEVTVDAAYVEKNLGE 421 Query: 426 FPSETDMYHFIL 437 TD+ ++L Sbjct: 422 LARSTDLSRYVL 433 >gi|114800330|ref|YP_760732.1| ATP-dependent protease ATP-binding subunit HslU [Hyphomonas neptunium ATCC 15444] gi|123027947|sp|Q0C0L1|HSLU_HYPNA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114740504|gb|ABI78629.1| heat shock protein HslVU, ATPase subunit HslU [Hyphomonas neptunium ATCC 15444] Length = 434 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 240/433 (55%), Positives = 322/433 (74%), Gaps = 2/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELDR+I+GQ AKRAVAIALRNRWRR+Q P +LR E+ PKNIL++GPTGVG Sbjct: 3 HLTPREIVAELDRHIVGQNAAKRAVAIALRNRWRRKQAPENLRGEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT +SRRLARLA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ ++RE +R V + Sbjct: 63 KTEVSRRLARLANAPFLKVEATKFTEVGYVGRDVEQIVRDLVEAAVGMIREQKRAGVDKA 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 A AEER+LDALVG A S+TREVFR+KLR GE+ DKE+D++ ADT++ + D+PG G Sbjct: 123 ARDKAEERLLDALVGAEAQSSTREVFRRKLRAGELDDKEVDLDFADTNNPMQMLDLPGQG 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 S+ ++NL ++ K MG ++ + P L+ +E+D+L+D + + R++I VE Sbjct: 183 GSMSMINLGDMLGKAMGGRTRRVRTTVREAAKP-LVTEEADKLVDEEQIVREAIMAVEED 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI AR G VSREGVQRDLLPL+EG++VSTK G++ TDHILFIASGAF Sbjct: 242 GIVFLDEIDKIAARKDRGGADVSREGVQRDLLPLIEGTTVSTKRGAVKTDHILFIASGAF 301 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DLLPE+QGR P+RV L+ L + D R IL + +++LI QY+ LM E + L F + Sbjct: 302 HVAKPSDLLPELQGRLPIRVELEPLTRDDLRRILVEPQASLIRQYEALMAAENVTLTFED 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 +ID +AD+A +N ++ +IGARRLQT++ER+L+DISF A D +T I A YV +G Sbjct: 362 GAIDRIADMAEAVNKSIENIGARRLQTILERLLDDISFDAPDKGGETFTITASYVDEKVG 421 Query: 425 DFPSETDMYHFIL 437 D+ FIL Sbjct: 422 SLAGNADLSKFIL 434 >gi|89052678|ref|YP_508129.1| ATP-dependent protease ATP-binding subunit HslU [Jannaschia sp. CCS1] gi|123094441|sp|Q28W08|HSLU_JANSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|88862227|gb|ABD53104.1| heat shock protein HslVU ATPase subunit HslU [Jannaschia sp. CCS1] Length = 438 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 247/438 (56%), Positives = 330/438 (75%), Gaps = 8/438 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD A ++RE+ R+EV+ + Sbjct: 63 KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAQVMIRENMREEVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER+++AL GK A TR++FRKKLR GE+ D I++EVAD S+ + F+IP Sbjct: 123 AHDAAEERVIEALAGKDAREQTRDMFRKKLRAGELDDTVIELEVADNSNPLGGFEIPSQP 182 Query: 184 ----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 G G++NL +LF K MG GR K R++V Y L+ DE+D+L+D +TV ++++ Sbjct: 183 GGMGGMGPGMMNLGDLF-KGMG-GRTVKRRLTVAASYDLLIEDEADKLLDAETVTKEALS 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 VE GIVF+DE DK+ A+ G VSREGVQRDLLPL+EG++VSTK+G + TDHILFI Sbjct: 241 AVEQSGIVFIDEIDKVCAKSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFI 300 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV+L++L + DF ILT+T++ L QY LM TE + Sbjct: 301 ASGAFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVA 360 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++FT+ I ALA +A +N +V +IGARRL TV+ERV E++SF+A D V +D +V Sbjct: 361 VEFTDGGIRALAHIAAEVNESVENIGARRLYTVLERVFEELSFTAPDRSGDAVTVDEAFV 420 Query: 420 RLHIGDFPSETDMYHFIL 437 ++G+ TD+ ++L Sbjct: 421 EQNLGELTRSTDLSRYVL 438 >gi|218659909|ref|ZP_03515839.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli IE4771] Length = 335 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/328 (72%), Positives = 281/328 (85%), Gaps = 3/328 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ DAKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHDAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRGEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++AEER+LDALVG TA+ TRE FRKKLRDGE+ DKEIDIEVADT + + F+IPG Sbjct: 123 AHVSAEERVLDALVGTTASPATRENFRKKLRDGELDDKEIDIEVADTGTGMGGFEIPGMP 182 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 GA++G+LNLSE+F K MG GR KK+R +V+ Y +L+RDESD+LID + + R++++ EN Sbjct: 183 GANIGVLNLSEMFGKAMG-GRTKKVRTTVKASYTDLIRDESDKLIDNEVIQREAVRSTEN 241 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGA Sbjct: 242 DGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGA 301 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNK 331 FHVS+P+DLLPE+QGR P+RV L++LNK Sbjct: 302 FHVSKPSDLLPELQGRLPIRVELRALNK 329 >gi|89067411|ref|ZP_01154924.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] gi|89046980|gb|EAR53034.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] Length = 433 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/434 (55%), Positives = 328/434 (75%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLGPDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIK+E TKFTE+GYVGR+VEQI+RDLVD AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKIEATKFTEVGYVGRDVEQIVRDLVDTAIIDTREHMREDVKSR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AEER++ A+ G+ A T+E+FRKKL+ G++ D I++EVADTS+ +IPG Sbjct: 123 AHAAAEERVIAAVAGEGAREGTKEMFRKKLKAGDLDDTMIELEVADTSNPF-GMEIPGQP 181 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G G +NL ++F K G R K RM+V + Y L+ DE+D+L+D + V + +++ VE Sbjct: 182 GMMPG-MNLGDMFGKAFGQ-RTVKKRMTVAESYETLIADEADKLLDDEIVKKAALEAVEQ 239 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGA Sbjct: 240 NGIVFLDEIDKVCRNSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGA 299 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV+L++L + DF ILT+T++ L QY+ LM TE + + FT Sbjct: 300 FHIAKPSDLLPELQGRLPIRVNLRALTEGDFVRILTETDNALTRQYEALMATETVAVSFT 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ I ALA +A ++N +V +IGARRL TVMERV E++SF+A D +TV +DA +V H+ Sbjct: 360 DEGIAALAKIAADVNESVENIGARRLYTVMERVFEELSFTAPDRGGETVTVDAAFVEEHL 419 Query: 424 GDFPSETDMYHFIL 437 G+ TD+ ++L Sbjct: 420 GELTRSTDLSRYVL 433 >gi|119385514|ref|YP_916570.1| ATP-dependent protease ATP-binding subunit [Paracoccus denitrificans PD1222] gi|166221593|sp|A1B5T0|HSLU_PARDP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|119375281|gb|ABL70874.1| heat shock protein HslVU, ATPase subunit HslU [Paracoccus denitrificans PD1222] Length = 435 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 246/435 (56%), Positives = 326/435 (74%), Gaps = 5/435 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ+DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQIIRDL D A+ RE RDEV+ + Sbjct: 63 KTEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMRDEVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A +AE+R++ AL G+ A TRE+FR KL+ GE+ DK I++E+ D SS +IPG Sbjct: 123 AHKSAEDRVVAALAGEGAREQTREMFRDKLKRGELDDKVIELELQDNSSPFGMMEIPGQP 182 Query: 186 SV---GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G+++LS L K G GR+ + ++SV + Y L+ +E+D+L+D + V +++ V+ Sbjct: 183 GQPMGGMMDLSGLM-KAFG-GRRVRRKLSVAESYDLLIAEEADKLLDDEAVKAAALEAVQ 240 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG Sbjct: 241 ENGIVFIDEIDKVAARTDARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 300 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TEG+ + F Sbjct: 301 AFHIAKPSDLLPELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQF 360 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 +D I ALA +A +N +V +IGARRL TV+ERV E++SFSA D +TVV+DA +V H Sbjct: 361 IQDGIRALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSGETVVVDAAFVEKH 420 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ ++L Sbjct: 421 LGDLSRSTDLSRYVL 435 >gi|330813379|ref|YP_004357618.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus Pelagibacter sp. IMCC9063] gi|327486474|gb|AEA80879.1| ATP-dependent hsl protease ATP-binding subunit HslU [Candidatus Pelagibacter sp. IMCC9063] Length = 439 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 249/433 (57%), Positives = 340/433 (78%), Gaps = 3/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDRY+IGQ DAK+AVAIALRNRWRRQ+LP DLR+E++PKNIL+VGPTGVG Sbjct: 9 SFSPREIVSELDRYVIGQADAKKAVAIALRNRWRRQELPDDLREEVLPKNILMVGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRL++L+ APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV + Sbjct: 69 KTEISRRLSKLSEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKEKKRKEVEAK 128 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 + +++EER+LD LVGK+AT TRE FRK+LR G++ D I+I V D S S F+IPG Sbjct: 129 SQLSSEERVLDTLVGKSATPATRESFRKRLRAGDLDDTVIEIAVQDNPSTPS-FEIPGMQ 187 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 VG++N+ ++F K +KKK +MSV++ Y ++++ESD+LID D + +++ VEN Sbjct: 188 GGVGMVNIGDIFGKGSAG-KKKKKKMSVKESYEYIIQEESDKLIDQDQIIKEAKFSVENN 246 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DK+ AR +G VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF Sbjct: 247 GIVFLDEIDKVSARSERSGTDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAF 306 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 +++P+DLLPE+QGR P+RV L+ L K DF IL + +++LI QY LMKTE + L FT+ Sbjct: 307 QLAKPSDLLPELQGRLPIRVELQPLTKQDFVRILKEPDNSLIKQYVALMKTENVELQFTD 366 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D I+ LA+++ +NST+ +IGARRL T++E+VLE+ISFSA D + +V+D +V+ ++G Sbjct: 367 DGIEELAEISSQINSTIENIGARRLHTILEKVLEEISFSAPDKSGEKIVVDKSFVQKNLG 426 Query: 425 DFPSETDMYHFIL 437 D + D+ FIL Sbjct: 427 DIIKDKDLSKFIL 439 >gi|258542120|ref|YP_003187553.1| ATP-dependent protease ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-01] gi|256633198|dbj|BAH99173.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-01] gi|256636257|dbj|BAI02226.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-03] gi|256639310|dbj|BAI05272.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-07] gi|256642366|dbj|BAI08321.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-22] gi|256645421|dbj|BAI11369.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-26] gi|256648474|dbj|BAI14415.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-32] gi|256651527|dbj|BAI17461.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654518|dbj|BAI20445.1| endopeptidase ATP-dependent hsl ATP-binding subunit HslU [Acetobacter pasteurianus IFO 3283-12] Length = 437 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/436 (55%), Positives = 335/436 (76%), Gaps = 7/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL +R+E++PKNIL++GPTG G Sbjct: 5 NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+ Sbjct: 65 KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEERI+DAL G+ ++++T+ FR LR G++ DKEIDI V + + S+ D+PG Sbjct: 125 ARQAAEERIIDALAGEGSSADTKSKFRSMLRSGQLEDKEIDIAVTEQAPAGSS-DMPGAV 183 Query: 186 SVGILNLSELFSKVMGSG-RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +N+ ++ M G ++KK+++SV + Y L R+E+DRL+D + + R+++ + Sbjct: 184 PGQAINVGDMMKAFMNRGPKQKKLKVSVAREY--LKREEADRLLDGEALTREAVANAQEN 241 Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 GIVFLDE DK+ AR S +G VSREGVQRDLLPL+EG++VSTK+G +NTDHILFIAS Sbjct: 242 GIVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKHGPVNTDHILFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY LM TEG+ L+ Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLN 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT+D+IDALA++A ++N V +IGARRL TV+ER+LE++SF+ASD + +TV ++A V+ Sbjct: 362 FTDDAIDALAELAADINDRVENIGARRLATVLERLLEEVSFTASDRKGETVEVNAAMVQE 421 Query: 422 HIGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 422 KVAPLARKGDLSRFIL 437 >gi|329114128|ref|ZP_08242890.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum DM001] gi|326696204|gb|EGE47883.1| ATP-dependent protease ATPase subunit HslU [Acetobacter pomorum DM001] Length = 437 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/436 (55%), Positives = 333/436 (76%), Gaps = 7/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NFSPREIVSELDR+I+GQQDAKRAVAIA+RNRWRR QL +R+E++PKNIL++GPTG G Sbjct: 5 NFSPREIVSELDRFIVGQQDAKRAVAIAMRNRWRRAQLSEGMREEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ I+RDLV+V+I +++ SRR +V E+ Sbjct: 65 KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDSIVRDLVEVSITMLKTSRRKDVEEK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEERI+DAL G+ ++++T+ FR LR G++ DKEIDI V + + S ++PG Sbjct: 125 AQQAAEERIVDALAGEGSSADTKSKFRSMLRTGQLEDKEIDIAVTEQAPAGSG-EMPGAM 183 Query: 186 SVGILNLSELFSKVMGSG-RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +N+ ++ M G ++KK+++SV + Y L R+E+DRL+D + + R+++ + Sbjct: 184 PGQAINVGDMMKAFMNRGPKQKKLKVSVAREY--LKREEADRLLDGEALTREAVANAQEN 241 Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 GIVFLDE DK+ AR S +G VSREGVQRDLLPL+EG++VSTKYG +NTDHILFIAS Sbjct: 242 GIVFLDEIDKVCARASESGAKGGDVSREGVQRDLLPLIEGTTVSTKYGPVNTDHILFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L+ L++ D R ILTD E +L+ QY LM TEG+ L+ Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSREDLRRILTDPEHSLLKQYIALMGTEGVTLN 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 F +D+IDALA++A ++N V +IGARRL TV+ER+LED+SF+ASD + +TV ++A V+ Sbjct: 362 FADDAIDALAELAADINDRVENIGARRLATVLERLLEDVSFTASDRKGETVEVNAAMVQE 421 Query: 422 HIGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 422 KVAPLARKGDLSRFIL 437 >gi|91762534|ref|ZP_01264499.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002] gi|91718336|gb|EAS84986.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1002] Length = 455 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/437 (54%), Positives = 342/437 (78%), Gaps = 4/437 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L + SPREIVSELDRY++GQ AK+AVAIALRNRWRRQ L ++++E++PKNIL++GPT Sbjct: 21 LVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGPT 80 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + + +R EV Sbjct: 81 GVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKEV 140 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 +A AEE++LDALVG A+ TRE FRK+LRDG++ D EI+IEV ++ S + F+IP Sbjct: 141 HTKAQKLAEEKVLDALVGNKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAA-FEIP 199 Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G GA++G++N+ E+ K +G+ ++KK +M+V++ + L+ DE+D+LI+ D + + + Sbjct: 200 GMPGANIGMINIGEMIGKSVGN-KQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 EN GIVFLDE DKI R +G VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAF +++P+DLLPE+QGR P+RV L++L DF+ IL + + +LI QY L+KTE + L Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +F++D IDA+A++A +N+TV +IGARRL T++ER+L+DISF+A+D + ++ID+ YV+ Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438 Query: 421 LHIGDFPSETDMYHFIL 437 ++ + +TD+ FIL Sbjct: 439 QNLDELVKDTDLSKFIL 455 >gi|126732953|ref|ZP_01748714.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] gi|126706570|gb|EBA05646.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] Length = 436 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 246/435 (56%), Positives = 327/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQQ+AKRAVA+ALRNRWRR+QL LRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQQEAKRAVAVALRNRWRRKQLTDHLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI RE R++V+ + Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDTAIIDTREHMREDVKTR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AE+R+++A+ GK A S TRE+FRKKL+ GE+ I+++VADTSS DIPG Sbjct: 123 AHAAAEDRVIEAIAGKDARSATREMFRKKLKSGELDQTVIELDVADTSSPFPMMDIPGQP 182 Query: 186 SVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G + NL ++F K +GR + M+V + Y L+ +E+D+L+D +TV +++ VE Sbjct: 183 GGGQMGMMNLGDIFGKAF-AGRTTRKSMTVAESYELLITEEADKLLDDETVKTAALEAVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVCARQEARGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+LK+L + DF ILT+T++ L QY LM TE + + F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLKALTEGDFVRILTETDNALTRQYTALMATEEVAVSF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T++ I+ALA +A +N +V +IGARRL TVMERV E++SF+A D + V +DA++V Sbjct: 362 TQEGIEALARIAAEVNGSVENIGARRLYTVMERVFEELSFAAPDKAGEAVTVDADFVEAQ 421 Query: 423 IGDFPSETDMYHFIL 437 +GD TD+ ++L Sbjct: 422 LGDLTRSTDLSRYVL 436 >gi|315497796|ref|YP_004086600.1| heat shock protein hslvu, atpase subunit hslu [Asticcacaulis excentricus CB 48] gi|315415808|gb|ADU12449.1| heat shock protein HslVU, ATPase subunit HslU [Asticcacaulis excentricus CB 48] Length = 432 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 249/432 (57%), Positives = 327/432 (75%), Gaps = 2/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+IIG DAK+AVA+ALRNRWRR+Q A +RDE+ PKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRHIIGHADAKKAVAVALRNRWRRKQTDAAIRDEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+QI+RDLV+ AI +V++ R VR + Sbjct: 63 KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVDQIVRDLVEAAILMVKDKSRQGVRAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEER+LDALVG A TR+ FRK+LR+ E+ DKE++I VADT I F+IPG Sbjct: 123 AEAQAEERLLDALVGPAAQPATRDSFRKRLRNNELDDKEVEITVADTGGAIGAFEIPGQP 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 I NL E+ K MG GR+K +R++V P L+ +ESD+L+D D V R+++ + E G Sbjct: 183 GNQI-NLGEMLQKAMG-GRQKTVRLTVAAAQPILLSEESDKLLDQDAVSREALSLAEQEG 240 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ +R G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 241 IVFLDEIDKVASRQERGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 300 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK+L + DFR IL++ E+NLI Q + LM TEG+ L F + Sbjct: 301 VAKPSDLLPELQGRLPIRVELKALTQDDFRRILSEPEANLIKQNQALMATEGVTLAFEDG 360 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +I +A A +N+ V +IGARRL T++ERV+E++SF+A+D +TV I A+YVR +G+ Sbjct: 361 AIAEMAAAAAQVNAKVENIGARRLHTIIERVMEELSFTAADQTGQTVTITADYVRERLGE 420 Query: 426 FPSETDMYHFIL 437 + D+ +IL Sbjct: 421 VAGDADLSRYIL 432 >gi|71083041|ref|YP_265760.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Pelagibacter ubique HTCC1062] gi|71062154|gb|AAZ21157.1| ATP-dependent protease [Candidatus Pelagibacter ubique HTCC1062] Length = 455 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/437 (54%), Positives = 342/437 (78%), Gaps = 4/437 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L + SPREIVSELDRY++GQ AK+AVAIALRNRWRRQ L ++++E++PKNIL++GPT Sbjct: 21 LVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGPT 80 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ISRRL++LA APF+KVE T+FTE+GYVGR+VEQIIRDL+++AI + + +R EV Sbjct: 81 GVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKEV 140 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 +A AEE++LDALVG A+ TRE FRK+LRDG++ D EI+IEV ++ S + F+IP Sbjct: 141 HAKAQKLAEEKVLDALVGDKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAA-FEIP 199 Query: 183 G--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G GA++G++N+ E+ K +G+ ++KK +M+V++ + L+ DE+D+LI+ D + + + Sbjct: 200 GMPGANIGMINIGEMIGKSVGN-KQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDS 258 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 EN GIVFLDE DKI R +G VSREGVQRDLLPL+EG++VSTKYG+I TDHILFIA Sbjct: 259 TENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIA 318 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAF +++P+DLLPE+QGR P+RV L++L DF+ IL + + +LI QY L+KTE + L Sbjct: 319 SGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVEL 378 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +F++D IDA+A++A +N+TV +IGARRL T++ER+L+DISF+A+D + ++ID+ YV+ Sbjct: 379 EFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVK 438 Query: 421 LHIGDFPSETDMYHFIL 437 ++ + +TD+ FIL Sbjct: 439 QNLDELVKDTDLSKFIL 455 >gi|294675591|ref|YP_003576206.1| ATP-dependent hsl protease ATP-binding subunit HslU [Rhodobacter capsulatus SB 1003] gi|294474411|gb|ADE83799.1| ATP-dependent hsl protease ATP-binding subunit hslU [Rhodobacter capsulatus SB 1003] Length = 433 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/432 (55%), Positives = 317/432 (73%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ +AKRAVA+ALRNRWRRQ+L ++R+E+ PKNIL++GPTGVG Sbjct: 3 SLTPREIVSELDRFIIGQAEAKRAVAVALRNRWRRQRLSPEMREEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQIIRDLVDVA+ RE R+EV+ + Sbjct: 63 KTEISRRLAKLAKAPFLKVEATKFTEVGYVGRDVEQIIRDLVDVAMVETRERMREEVKAR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AE+R+++ L G A TRE+FR+KLRDGE+ DK+I+IEVA+T+S G Sbjct: 123 AHKAAEDRVIEVLAGTDAREQTREMFRRKLRDGELDDKQIEIEVAETASAPQMMMGNPGM 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 + + L +LF K G RK + +MSV + Y L+ +E+D+L+D + V +++ V G Sbjct: 183 ELQMQGLQDLF-KAFGGARKTRRKMSVAESYEVLISEEADKLLDDEAVKTAALEAVSQSG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 242 IVFLDEIDKVAARAETRGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +++P+DLLPE+QGR P+RV L+ L + DF ILT+T++ L QY LM TE + + FT + Sbjct: 302 IAKPSDLLPELQGRLPIRVELRPLTEEDFVRILTETDNALTRQYTALMATEEVTVSFTPE 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I ALA +A +N +V +IGARRL TVMERV E++SF+A D V +DA +V H+G Sbjct: 362 GIAALARIAAEVNRSVENIGARRLYTVMERVFEELSFTAPDRSGDQVTVDAAFVERHLGS 421 Query: 426 FPSETDMYHFIL 437 D+ ++L Sbjct: 422 LAQSADLSRYVL 433 >gi|262277814|ref|ZP_06055607.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium HIMB114] gi|262224917|gb|EEY75376.1| ATP-dependent protease HslVU, ATPase subunit [alpha proteobacterium HIMB114] Length = 439 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 243/434 (55%), Positives = 342/434 (78%), Gaps = 5/434 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +FSPREIVSELDR++IGQ +AKRAVAIALRNRWRRQ+LP ++R+E++PKNIL++GPTGVG Sbjct: 9 SFSPREIVSELDRFVIGQSEAKRAVAIALRNRWRRQELPEEIREEVLPKNILMIGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRL++LA APFIKVE TKFTE+GYVG++VEQIIRDL++++I +V+E +R EV + Sbjct: 69 KTEISRRLSKLAEAPFIKVEATKFTEVGYVGKDVEQIIRDLIEISIALVKERKRKEVLTK 128 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 A ++AEER+L+ LVGK A+ T+E +RK+LR G++ + EI+I V D S + +FDIPG Sbjct: 129 AQMSAEERVLEVLVGKNASGATKESYRKRLRAGDLDNNEIEISVQD-SPQMPSFDIPGMQ 187 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 SVG++++ ++F K M KKK +M+V++ Y L+ +ESD+L+D D V +++ EN Sbjct: 188 GSVGMVSIGDIFGKGMTK--KKKKKMTVKESYDYLIEEESDKLMDNDQVLKEAKFAAENN 245 Query: 245 GIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DK+ AR G +G VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGA Sbjct: 246 GIVFLDEIDKVSARSDGRSGADVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGA 305 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 F +++P+DLLPE+QGR P+RV L +L K DF IL + +++LI QY L+ TE + L+FT Sbjct: 306 FQLAKPSDLLPELQGRLPIRVELNALTKEDFIKILKEPDNSLIKQYTALLGTEKVTLEFT 365 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +D+I+A+A+++ ++NST+ +IGARRL T++E++L+DISF A D + V+I+ YV H+ Sbjct: 366 DDAIEAIAEISTHINSTIENIGARRLHTILEKILDDISFDAPDKSGEKVLINKAYVDKHL 425 Query: 424 GDFPSETDMYHFIL 437 GD + D+ FIL Sbjct: 426 GDIAKDKDLSKFIL 439 >gi|254438704|ref|ZP_05052198.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter antarcticus 307] gi|198254150|gb|EDY78464.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter antarcticus 307] Length = 434 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 241/433 (55%), Positives = 325/433 (75%), Gaps = 2/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALR+RWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQSDAKRAVAVALRSRWRRRQLDDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI R+ RD+V+++ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMRDDVKQK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 A AE R++DA+ GK A TR++FRKKL+ GE+ + I++E+AD S+ + N +IPG Sbjct: 123 AQEAAEARVIDAIAGKDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGNMEIPGQP 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 ++G ++L +F K G R K R++V + Y L+ DE+D+L+D +TV + ++ VE Sbjct: 183 PTLGGMDLGAMFGKAFGP-RTMKKRVTVSESYALLIADEADKLLDDETVTKIALDSVEQN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DK+ G VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGAF Sbjct: 242 GIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGAF 301 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TE + + F+E Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEDVTVSFSE 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D I ALA +A +N +V +IGARRL TVMERV ED+SF+A D + ++A +V H+G Sbjct: 362 DGIAALAHIAAEVNESVENIGARRLYTVMERVFEDLSFNAPDRGGDEIEVNAAFVEQHLG 421 Query: 425 DFPSETDMYHFIL 437 + TD+ ++L Sbjct: 422 ELARSTDISRYVL 434 >gi|57239496|ref|YP_180632.1| ATP-dependent protease ATP-binding subunit HslU [Ehrlichia ruminantium str. Welgevonden] gi|58579476|ref|YP_197688.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium str. Welgevonden] gi|58617530|ref|YP_196729.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium str. Gardel] gi|57161575|emb|CAH58503.1| ATP-dependent hsl protease ATP-binding subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417142|emb|CAI28255.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia ruminantium str. Gardel] gi|58418102|emb|CAI27306.1| ATP-dependent hsl protease ATP-binding subunit hslU [Ehrlichia ruminantium str. Welgevonden] Length = 488 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/434 (53%), Positives = 333/434 (76%), Gaps = 4/434 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++I ELDR+IIGQ DAKRAVAIALRNRWRR ++P LR++++PKNIL++G TGVGK Sbjct: 56 LTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREDIIPKNILMIGHTGVGK 115 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E R V+++A Sbjct: 116 TEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKERFRKAVQKKA 175 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 +E ILDAL+G A+ T+ +F++KL++GE + EI I + ++ S I D+P G Sbjct: 176 KDLSENIILDALIGSDASQETKTIFQEKLKNGEFENSEISISIKESKSPIPPIDVPNIPG 235 Query: 185 ASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 + VG++N+SE+ K++G+ ++ K ++++V++ L+ +ES++LID D + ++++Q+ N Sbjct: 236 SQVGVMNISEIVHKMLGNNKQLKTVKVTVKEARELLINEESEKLIDEDKIVKEALQLASN 295 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASGA Sbjct: 296 DGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASGA 354 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV LK L+K D ILT+ ES+L+ QY LMKTE I +DFT Sbjct: 355 FHLAKPSDLLPELQGRLPIRVELKPLSKDDLIRILTEPESSLLKQYCALMKTENITIDFT 414 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ + +AD+A +N V +IGARRL T++E+++EDIS++A++ KT VID+EYV+ + Sbjct: 415 DEGVSTIADIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVKKKL 474 Query: 424 GDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 475 ENISKQLDLSKFIL 488 >gi|254455698|ref|ZP_05069127.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Pelagibacter sp. HTCC7211] gi|207082700|gb|EDZ60126.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Pelagibacter sp. HTCC7211] Length = 457 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/431 (54%), Positives = 338/431 (78%), Gaps = 3/431 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 PREIVSELDR+++GQ AK+AVA+ALRNRWRRQ L ++++E++PKNIL++GPTGVGKT Sbjct: 28 PREIVSELDRFVVGQNKAKKAVAVALRNRWRRQALTGEMKNEVLPKNILMIGPTGVGKTE 87 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 ISRRL++LA APF+KVE T+FTE+GYVGR+VEQI+RDL+++AI++ + R V QA Sbjct: 88 ISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIVRDLIEIAISMEKVKMRKGVHAQAQK 147 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GAS 186 AEE++LDALVGK A+ TRE FRK+LR+G++ D EI+I V+DT S ++F+IPG GA+ Sbjct: 148 AAEEKVLDALVGKKASLATRESFRKRLRNGDLDDNEIEIAVSDTGSGNTSFEIPGMPGAN 207 Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246 VG++N+ E+ K MG+ ++KK +M+V++ + L+ DESD+LI+ D + + + EN GI Sbjct: 208 VGMINIGEMIGKSMGN-KEKKKKMTVKESHEILINDESDKLIEQDKIVKAAKLSTENNGI 266 Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306 VFLDE DKI AR G VSREGVQRDLLPL+EG++V+TK+G I TDHILFIASGAF + Sbjct: 267 VFLDEVDKISARTDRVGGDVSREGVQRDLLPLIEGTTVNTKHGPIKTDHILFIASGAFQL 326 Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 ++P+DLLPE+QGR P+RV L++L DF+ IL + + +LI QY L+KTE + L+F++D Sbjct: 327 AKPSDLLPELQGRLPIRVELEALTSEDFKRILREPDFSLIKQYVALLKTENVELEFSDDG 386 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 IDA+A++A +N+TV +IGARRL T++E++L++ISF+A+D + ++I+ EY+ ++ + Sbjct: 387 IDAIANIASEVNTTVENIGARRLHTIIEKILDEISFTATDRSGEKIIINKEYIDKNLDNL 446 Query: 427 PSETDMYHFIL 437 +TD+ FIL Sbjct: 447 IKDTDLSKFIL 457 >gi|73667418|ref|YP_303434.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str. Jake] gi|72394559|gb|AAZ68836.1| Heat shock protein HslU [Ehrlichia canis str. Jake] Length = 492 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +P++I LDR+IIGQ DAKRAVAIALRNRWRR ++P LR+E++PKNIL++G TG Sbjct: 57 TQELTPQQITQALDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTG 116 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 +GKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+V+E R V Sbjct: 117 IGKTEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLVKEKFRKIVE 176 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 ++A +E ILDAL+G A+ T+ +F++KLR+GE D EI I + ++ + + DIP Sbjct: 177 KKAKALSESMILDALIGPDASEETKTIFQEKLRNGEFEDSEISISIKESKNTMPPIDIPN 236 Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G VGI+N++E+ K++G+ ++ K I+++V++ L+ +ES++L+D D + ++++Q+ Sbjct: 237 IPGNQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKEALQL 296 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIA Sbjct: 297 ASNDGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIA 355 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+++P+DLLPE+QGR P+RV LK L+K D ILT+ ES+L+ QY LMKTE I + Sbjct: 356 SGAFHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITI 415 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 DFT++ + +A++A +N V +IGARRL T++E+++EDIS++A++ KT VID+EYV+ Sbjct: 416 DFTDEGVCTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGKTYVIDSEYVK 475 Query: 421 LHIGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 476 QKLEDISKQLDLSKFIL 492 >gi|254451571|ref|ZP_05065008.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter antarcticus 238] gi|198265977|gb|EDY90247.1| heat shock protein HslVU, ATPase subunit HslU [Octadecabacter antarcticus 238] Length = 434 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/433 (54%), Positives = 323/433 (74%), Gaps = 2/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQ DAKRAVA+ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLV+ AI R+ R++V+++ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVESAIVETRDYMREDVKQK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AE R++DA+ G A TR++FRKKL+ GE+ + I++E+AD S+ + +IPG Sbjct: 123 AQEAAEARVIDAIAGTDAREGTRDMFRKKLKTGELDNTIIELELADNSNPMGGMEIPGQP 182 Query: 186 -SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +G ++LS +F K G+ R K R++V + Y L+ DE+D+L+D +TV + +++ VE Sbjct: 183 PGMGGMDLSAMFGKAFGA-RTVKKRVTVSESYALLVADEADKLLDDETVTKIALESVEQN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DK+ G VSREGVQRDLLPL+EG++VSTK+GS+ TDHILFIASGAF Sbjct: 242 GIVFLDEIDKVCRNADARGADVSREGVQRDLLPLIEGTTVSTKHGSVKTDHILFIASGAF 301 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H+++P+DLLPE+QGR P+RV L++L + DF ILT+T++ L QY LM TE + + F+E Sbjct: 302 HIAKPSDLLPELQGRLPIRVELRALTEHDFVRILTETDNALTRQYTALMGTEEVTVSFSE 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D I ALA +A +N ++ +IGARRL TVMERV ED+SF+A + + + A +V H+G Sbjct: 362 DGIAALARIAAEVNESIENIGARRLYTVMERVFEDLSFNAPERGGDEIEVSAAFVEEHLG 421 Query: 425 DFPSETDMYHFIL 437 TD+ ++L Sbjct: 422 ALARSTDLSRYVL 434 >gi|114762242|ref|ZP_01441710.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis HTCC2601] gi|114545266|gb|EAU48269.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. HTCC2601] Length = 436 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 242/435 (55%), Positives = 329/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELDR+IIGQQDAKRAV++ALRNRWRR+QL DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLTPREIVSELDRFIIGQQDAKRAVSVALRNRWRRKQLSEDLRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD +I + RE R++V+ Sbjct: 63 KTEISRRLAKLAKAPFIKVEATKFTEVGYVGRDVEQIIRDLVDSSIALTREHMREDVKAA 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEER+++A+ G A +TRE+FRKKLR+GE+ EI+++VA+T+S +IPG Sbjct: 123 AHKAAEERVIEAIAGTDARESTREMFRKKLRNGELDGTEIELDVAETASPFPMMEIPGQP 182 Query: 186 SVGIL---NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G + NLSE+F K G GR + +++V + Y L+++E+D+L+D + V + +++ VE Sbjct: 183 GQGGMGMMNLSEMFGKAFG-GRTTRKKLTVAESYEILIQEEADKLLDDEVVKKAALEAVE 241 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASG Sbjct: 242 QNGIVFLDEIDKVAARQETRGGDVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASG 301 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV+L++L + DF ILT+T++ L QY LM TE + ++F Sbjct: 302 AFHIAKPSDLLPELQGRLPIRVNLRALTEDDFVRILTETDNALTRQYTALMATEEVTVEF 361 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TED I ALA +A +N +V +IGARRL TVMERV E++SF+A D + +D +V + Sbjct: 362 TEDGIHALARIAAQVNESVENIGARRLYTVMERVFEELSFTAPDRAGDKITVDDAFVETY 421 Query: 423 IGDFPSETDMYHFIL 437 +G+ D+ ++L Sbjct: 422 LGELTRSADLSRYVL 436 >gi|162149054|ref|YP_001603515.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter diazotrophicus PAl 5] gi|161787631|emb|CAP57227.1| putative ATP-dependent hsl protease ATP-binding subunit hslU [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 233/435 (53%), Positives = 329/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL LRDE++PKNIL++GPTG G Sbjct: 5 NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ + Sbjct: 65 KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A + AE R++DALVG+ A+++T+ FR+ LR+GE+ +KE++I +ADT + S D+ Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGSMGDMGNMT 184 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 S ++N S++ +M +++ RM+V L R+E+D+++D D + +++ +++G Sbjct: 185 SGTVINFSDMMKGLMNRVPQRR-RMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243 Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 IVFLDE DK+ AR S +G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L L + D R ILT+ E +L+ QY L+ TEG+ L+F Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 ++D++DALA++A ++N + +IGARRL TV+ER+LE++SF+ASD + V I A V+ Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 424 VAPLARKGDLSRFIL 438 >gi|209545199|ref|YP_002277428.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter diazotrophicus PAl 5] gi|209532876|gb|ACI52813.1| heat shock protein HslVU, ATPase subunit HslU [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/435 (53%), Positives = 328/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QL LRDE++PKNIL++GPTG G Sbjct: 5 NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLADGLRDEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V++N++R+ RR +V+ + Sbjct: 65 KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSLNMLRDLRRRDVQAR 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A + AE R++DALVG+ A+++T+ FR+ LR+GE+ +KE++I +ADT + D+ Sbjct: 125 AELAAENRLVDALVGEGASADTKGKFRRMLRNGELEEKEVEISIADTQAPGGMGDMGNMT 184 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 S ++N S++ +M +++ RM+V L R+E+D+++D D + +++ +++G Sbjct: 185 SGTVINFSDMMKGLMNRVPQRR-RMTVAAAREALTREEADKMLDNDALTGEAVAHAQDHG 243 Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 IVFLDE DK+ AR S +G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG Sbjct: 244 IVFLDEIDKVCARSSESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 303 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L L + D R ILT+ E +L+ QY L+ TEG+ L+F Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELAPLTREDLRRILTEPEHSLLKQYTALLGTEGVTLEF 363 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 ++D++DALA++A ++N + +IGARRL TV+ER+LE++SF+ASD + V I A V+ Sbjct: 364 SDDAVDALAELAADINERIENIGARRLATVLERLLEEVSFTASDRSGQAVRITAADVQDK 423 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 424 VAPLARKGDLSRFIL 438 >gi|296283400|ref|ZP_06861398.1| ATP-dependent protease ATP-binding subunit HslU [Citromicrobium bathyomarinum JL354] Length = 433 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/433 (54%), Positives = 321/433 (74%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L DLRDE+ PKNIL++GPTG G Sbjct: 4 TLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPTGCG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLARLA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ VRE Sbjct: 64 KTEISRRLARLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAVRES 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 AS A ER+LDALVG A+ TR+ FR+++ ++D E++IEV D + + DIPG G Sbjct: 124 ASEAAMERLLDALVGDNASEATRQSFRERITQNAMNDVEVEIEVQDQPA--TTMDIPGMG 181 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +VG+++LS++F K MG + ++ V + + L+ +E+++ +D D V R ++Q E Sbjct: 182 GNVGMIDLSDMFGKAMGKKPTSRRKLRVPEAWDRLVDEEAEKRMDQDDVARVALQNAETN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TK+G + TDH+LFIASGAF Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKHGPMKTDHVLFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HVS+P+D+LPE+QGR P+RV L++L + DF IL++T +NL+ QY L+ TE + LD T+ Sbjct: 301 HVSKPSDMLPELQGRLPIRVELRALTEEDFVRILSETRANLVQQYTALIGTEKVTLDITD 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 +++ +A +A +N V +IGARRLQTVMER++EDISF A + + +TV IDA YV + Sbjct: 361 EAVREVAKIAAQVNEAVENIGARRLQTVMERLVEDISFEAEEHEGETVTIDAAYVHERLD 420 Query: 425 DFPSETDMYHFIL 437 D +TD+ +IL Sbjct: 421 DLARDTDLSKYIL 433 >gi|85372871|ref|YP_456933.1| ATP-dependent protease ATP-binding subunit HslU [Erythrobacter litoralis HTCC2594] gi|84785954|gb|ABC62136.1| ATP-dependent protease HslVU ATPase subunit [Erythrobacter litoralis HTCC2594] Length = 433 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/436 (53%), Positives = 328/436 (75%), Gaps = 4/436 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRR QL A+LRDE+ PKNIL++GPT Sbjct: 1 MTEALTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRLQLGAELRDEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ AI + ++ RR+ V Sbjct: 61 GCGKTEISRRLAKLAEAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKDRRREAV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 RE AS A ER+LDALVG A+ TRE FR+++ ++D E+++EV+D+ S +IP Sbjct: 121 REAASTAAMERLLDALVGDNASEATRESFRERVVQNAMNDVEVEVEVSDSPS--MPMEIP 178 Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G G +VG+++LS++ K +G KK+ ++ V + +L+ +E+++ +D D V R +++ Sbjct: 179 GLGGNVGMIDLSDMMGKALGRNNKKRRKLKVPDAWDKLVEEEAEKRMDQDDVSRVALENA 238 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DKI D G VSREGVQRDLLPL+EG++VSTK+G + TDH+LFIAS Sbjct: 239 ETNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKHGPMKTDHVLFIAS 297 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVS+P+D+LPE+QGR P+RV L++L DF IL++T +NL+ QYK L+ TE + ++ Sbjct: 298 GAFHVSKPSDMLPELQGRLPIRVELRALEIEDFVRILSETRANLVEQYKALLGTEDVTVE 357 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 T+D+I +A +A +N +V +IGARRLQTVMER+LE++SF A + + +T+VIDA YV+ Sbjct: 358 ITDDAIREVATIAAQVNESVENIGARRLQTVMERLLEELSFEAEEHKGETIVIDAAYVKD 417 Query: 422 HIGDFPSETDMYHFIL 437 + + ++D+ +IL Sbjct: 418 KLSELAEDSDLSKYIL 433 >gi|68171727|ref|ZP_00545080.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa] gi|88657724|ref|YP_507784.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis str. Arkansas] gi|67998849|gb|EAM85548.1| Heat shock protein HslU [Ehrlichia chaffeensis str. Sapulpa] gi|88599181|gb|ABD44650.1| heat shock protein HslVU, ATPase subunit HslU [Ehrlichia chaffeensis str. Arkansas] Length = 487 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/434 (53%), Positives = 329/434 (75%), Gaps = 4/434 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++I ELDR+IIGQ DAKRAVAIALRNRWRR ++P LR+E++PKNIL++G TG+GK Sbjct: 55 LTPQQITQELDRFIIGQADAKRAVAIALRNRWRRNRVPEPLREEIIPKNILMIGHTGIGK 114 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ IIRDLVDVAIN+ +E R V +A Sbjct: 115 TEIARRLAKLAKAPFIKVEATKFTEIGYVGRDVDSIIRDLVDVAINLEKEKSRKFVETKA 174 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 AE IL+ALVG A+ T+ +F++KLR+GE + EI I + ++ + I + DIP G Sbjct: 175 KSLAENIILEALVGADASQETKTIFQEKLRNGEFENFEISISIKESKNAIPSIDIPNIPG 234 Query: 185 ASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 VGI+N++E+ K++G+ ++ K I+++V++ L+ +ES++L+D D + +D++ + N Sbjct: 235 NQVGIMNINEIVHKMLGNNKQLKTIKVTVKEARELLINEESEKLMDEDKIIKDALLLASN 294 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SV+TKYG+I TDHILFIASGA Sbjct: 295 DGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVTTKYGTITTDHILFIASGA 353 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+++P+DLLPE+QGR P+RV LK L+K D ILT+ ES+L+ QY LMKTE I +DFT Sbjct: 354 FHLAKPSDLLPELQGRLPIRVELKPLSKDDLVRILTEPESSLLKQYCALMKTENITIDFT 413 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ + +A++A +N V +IGARRL T++E+++EDIS++A++ +T VID+EYV+ + Sbjct: 414 DEGVSTIAEIASTVNREVENIGARRLHTILEKLMEDISYTATENSGRTYVIDSEYVKKKL 473 Query: 424 GDFPSETDMYHFIL 437 D + D+ FIL Sbjct: 474 EDIAKQLDLSKFIL 487 >gi|295691591|ref|YP_003595284.1| heat shock protein ATPase subunit HslU [Caulobacter segnis ATCC 21756] gi|295433494|gb|ADG12666.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter segnis ATCC 21756] Length = 430 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/431 (57%), Positives = 336/431 (77%), Gaps = 4/431 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDRYI+G DAK+AVA+ALRNRWRR++ PAD+RDEL PKNILL+GPTGVGK Sbjct: 4 FSPREIVSELDRYIVGHTDAKKAVAVALRNRWRRRRAPADIRDELTPKNILLIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR+ RR V+ +A Sbjct: 64 TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVRDKRRAAVKAKA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186 AEERILDAL G +T+ RE FRKK+R GE+ DKE+++++ADT F+IPG Sbjct: 124 EGAAEERILDALTGPGSTA-AREAFRKKIRAGELDDKEVELQLADTGG--QTFEIPGQPG 180 Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246 + NLS++ K G GR+K + +V + L+ +ESD+L+D + + ++++++ EN+GI Sbjct: 181 AAVFNLSDMM-KSFGGGRQKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENHGI 239 Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306 VFLDE DK+ + +G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFHV Sbjct: 240 VFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFHV 299 Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 ++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NL+ Q++ LM TE + L FT+++ Sbjct: 300 AKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLVRQHQALMATENVTLVFTDEA 359 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 IDALAD AV +N++V +IGARRLQT++E+V+E+ISF+A+D +TV +DA YV+ +G Sbjct: 360 IDALADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRGGETVTVDAAYVQERVGAL 419 Query: 427 PSETDMYHFIL 437 + D+ FIL Sbjct: 420 AANADLSRFIL 430 >gi|255003419|ref|ZP_05278383.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma marginale str. Puerto Rico] gi|255004539|ref|ZP_05279340.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma marginale str. Virginia] Length = 480 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T + SPR+I ELDR+I+GQ++AK+AVA ALR+RWRR ++P LRDE++PKNIL++G TG Sbjct: 45 TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 104 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E R V Sbjct: 105 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 164 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 +QA ++EE IL+ LVG A+ T+ FR++LR GE D EI I V + + +FD+PG Sbjct: 165 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224 Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G+ VGI+N++E+ K++G ++ K ++ +V++ L+ +E+++LID D + R+++ + Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+++P+DLLPE+QGR P+RV LK L + D ILT+ ESNL+ QY+ LM+TEG+ + Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +FTED I A+A++A +N V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463 Query: 421 LHIGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 464 EKLEDISKQMDLSKFIL 480 >gi|56417066|ref|YP_154140.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale str. St. Maries] gi|222475432|ref|YP_002563849.1| heat shock protein (hslU) [Anaplasma marginale str. Florida] gi|56388298|gb|AAV86885.1| heat shock protein [Anaplasma marginale str. St. Maries] gi|222419570|gb|ACM49593.1| heat shock protein (hslU) [Anaplasma marginale str. Florida] Length = 482 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/437 (53%), Positives = 331/437 (75%), Gaps = 4/437 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T + SPR+I ELDR+I+GQ++AK+AVA ALR+RWRR ++P LRDE++PKNIL++G TG Sbjct: 47 TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 106 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E R V Sbjct: 107 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 166 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 +QA ++EE IL+ LVG A+ T+ FR++LR GE D EI I V + + +FD+PG Sbjct: 167 KQARKSSEEIILNCLVGVDASEETKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 226 Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G+ VGI+N++E+ K++G ++ K ++ +V++ L+ +E+++LID D + R+++ + Sbjct: 227 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 286 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA Sbjct: 287 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 345 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+++P+DLLPE+QGR P+RV LK L + D ILT+ ESNL+ QY+ LM+TEG+ + Sbjct: 346 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 405 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +FTED I A+A++A +N V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR Sbjct: 406 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 465 Query: 421 LHIGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 466 EKLEDISKQMDLSKFIL 482 >gi|296116619|ref|ZP_06835229.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter hansenii ATCC 23769] gi|295976831|gb|EFG83599.1| ATP-dependent protease ATP-binding subunit HslU [Gluconacetobacter hansenii ATCC 23769] Length = 438 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIVSELDR+IIGQ DAKRAVAIALRNRWRR QLP LRDE++PKNIL++GPTG G Sbjct: 5 NHSPREIVSELDRFIIGQTDAKRAVAIALRNRWRRAQLPEGLRDEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++R+ RR +V+ + Sbjct: 65 KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRDLRRRDVQAK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A + AE +LDALVG+ A+++TR FR+ LR+G++ KE++I V + S D+P Sbjct: 125 AEMAAENSLLDALVGEGASADTRNKFRRMLRNGDLETKEVEISVTEGPSPSGQADMPNMT 184 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 ++N S++ M +++ RM+V + L R+E+D+++D +T+ R+++ +++G Sbjct: 185 PGTVINFSDMMKGFMNRVPQRR-RMTVAEARAALTREEADKMLDTETLTREAVAHAQDHG 243 Query: 246 IVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 IVFLDE DK+ AR + G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG Sbjct: 244 IVFLDEIDKVCARGAEGGARGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILFIASG 303 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY L+ TE + L F Sbjct: 304 AFHIAKPSDLLPELQGRLPIRVELSSLTRQDLRRILTEPEHSLLTQYIALLGTEKVTLRF 363 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D++DALA++A ++N V +IGARRL TV+ER+LE++SF+A+D ++V I A V+ Sbjct: 364 TDDAVDALAELAADINERVENIGARRLATVIERLLEEVSFTATDRAGQSVEITAADVQEK 423 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 424 VAPLARKGDLSRFIL 438 >gi|197103501|ref|YP_002128878.1| heat shock protein HslU [Phenylobacterium zucineum HLK1] gi|238690142|sp|B4RBI9|HSLU_PHEZH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|196476921|gb|ACG76449.1| heat shock protein HslU [Phenylobacterium zucineum HLK1] Length = 434 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 258/433 (59%), Positives = 342/433 (78%), Gaps = 4/433 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDR+I+G +AKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVGK Sbjct: 4 FSPREIVSELDRFIVGHPEAKRAVAVALRNRWRRRRVPDDLRDEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ AI +VRE RR VR +A Sbjct: 64 TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESAIQMVREKRRAAVRARA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--G 184 AEERILDAL G +T+ RE FR+KLR GE+ DKE+++++ADTSS DIPG G Sbjct: 124 EAAAEERILDALTGPGSTA-AREAFRRKLRAGELDDKEVELQLADTSSPFGAMDIPGQPG 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 AS+G+LNL ++F K G GR K + +V + L+ +ESD+L+D + + ++++++ EN Sbjct: 183 ASMGVLNLGDMFGKAFG-GRTKTHKTTVSGAWVPLIAEESDKLVDQEALTQEALELAENQ 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DK+ +R G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF Sbjct: 242 GIVFLDEIDKVASRQDRAGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 301 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DLLPE+QGR P+RV LK+L++ D R ILT+ E+NLI Q++ L+ TEG+ L FTE Sbjct: 302 HVAKPSDLLPELQGRLPIRVELKALSRQDMRRILTEPEANLIRQHQALLATEGVTLTFTE 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D+IDALAD AV +N +V +IGARRLQT++E+VLE++SF+A+D +T+ +DA YV IG Sbjct: 362 DAIDALADAAVAVNGSVENIGARRLQTILEKVLEEVSFTAADRDGETITVDAAYVNGRIG 421 Query: 425 DFPSETDMYHFIL 437 D D+ FIL Sbjct: 422 DLAGNADLSKFIL 434 >gi|152998996|ref|YP_001364677.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica OS185] gi|166221607|sp|A6WIH5|HSLU_SHEB8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|151363614|gb|ABS06614.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS185] Length = 442 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/441 (53%), Positives = 315/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123 Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 +AEERILDAL+ K ++SNTR+VFRKKLR+G++ DKEIDI+VA + Sbjct: 124 EEHAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQIGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+MVE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMNTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++F+E ID++A A +N +IGARRL TVME+++EDIS+ AS+ VIDA Sbjct: 362 GVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|330993964|ref|ZP_08317894.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp. SXCC-1] gi|329758910|gb|EGG75424.1| ATP-dependent protease ATPase subunit HslU [Gluconacetobacter sp. SXCC-1] Length = 437 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 240/439 (54%), Positives = 323/439 (73%), Gaps = 13/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIVSELDRYIIGQ DAKRAVAIALRNRWRR QL +R+E++PKNIL++GPTG G Sbjct: 5 NHSPREIVSELDRYIIGQTDAKRAVAIALRNRWRRAQLTDAMREEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+VE I+RDLV+V+IN++RE RR +V + Sbjct: 65 KTEIARRLARLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEVSINMLRELRRRDVEVK 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNFDI 181 A AE +LDALVG+ A++ TR FR+ LR GE+ KE++I +A+ S D+S+ Sbjct: 125 AEGAAENILLDALVGEGASAETRNKFRRMLRAGELEGKEVEISIAEGSGPAQPDMSSM-T 183 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 PG ++N S++ M ++K RM+V + L R E+D+++D + + R+++ Sbjct: 184 PG----AVINFSDMMKGFMNRMPQQK-RMTVAEARAALTRQEADKMLDTEALTREAVAHA 238 Query: 242 ENYGIVFLDEFDKIVARDS---GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 +++GIVFLDE DK+ AR S G VSREGVQRDLLPL+EG++VSTKYG + TDHILF Sbjct: 239 QDHGIVFLDEIDKVCARASEGGSRGGDVSREGVQRDLLPLIEGTTVSTKYGPVRTDHILF 298 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DLLPE+QGR P+RV L SL + D R ILT+ E +L+ QY L+ TE + Sbjct: 299 IASGAFHIAKPSDLLPELQGRLPIRVELASLTRDDLRRILTEPEHSLLQQYIALLGTEKV 358 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+ +IDALA++A ++N V +IGARRL TV+ER+LE +SF+A D ++VVIDA Sbjct: 359 TLSFTDAAIDALAELAADINERVENIGARRLATVLERLLESVSFTAPDRSGQSVVIDAAD 418 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + S+ D+ FIL Sbjct: 419 VQEKVAPLASKGDLSRFIL 437 >gi|16127958|ref|NP_422522.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus CB15] gi|221236780|ref|YP_002519217.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter crescentus NA1000] gi|22653796|sp|Q9A238|HSLU_CAUCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802301|sp|B8GW06|HSLU_CAUCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|13425498|gb|AAK25690.1| heat shock protein HslU [Caulobacter crescentus CB15] gi|220965953|gb|ACL97309.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Caulobacter crescentus NA1000] Length = 430 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 253/431 (58%), Positives = 338/431 (78%), Gaps = 4/431 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 FSPREIVSELDRYI+G +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGVGK Sbjct: 4 FSPREIVSELDRYIVGHAEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VRE RR V+ +A Sbjct: 64 TEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALAMVREKRRAAVKAKA 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186 AEERILDAL G +T+ RE FRKKLR GE+ DKE+++++ADT +FDIPG Sbjct: 124 EGGAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADTGG--PSFDIPGQPG 180 Query: 187 VGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246 + NLS++ K +G GR K + +V + L+ +ESD+L+D + + ++++++ EN+GI Sbjct: 181 AAVFNLSDMM-KSLGGGRTKTHKTTVSGAWAPLIAEESDKLLDQEALTQEALELAENHGI 239 Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306 VFLDE DK+ + +G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFHV Sbjct: 240 VFLDEIDKVASSSQRSGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFHV 299 Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 ++P+DLLPE+QGR P+RV LK L++ D R ILT+ E+NLI Q++ LM TE + L FT+++ Sbjct: 300 AKPSDLLPELQGRLPIRVELKGLSRDDMRRILTEPEANLIRQHQALMATEEVTLVFTDEA 359 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 IDALAD AV +N +V +IGARRLQTVME+V+E+ISF+A+D +TV IDA YV+ +G Sbjct: 360 IDALADAAVAVNGSVENIGARRLQTVMEKVVEEISFTAADRGGETVTIDAAYVQERVGAL 419 Query: 427 PSETDMYHFIL 437 + D+ FIL Sbjct: 420 AANADLSRFIL 430 >gi|126176059|ref|YP_001052208.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica OS155] gi|160873586|ref|YP_001552902.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica OS195] gi|217971678|ref|YP_002356429.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella baltica OS223] gi|304411507|ref|ZP_07393120.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS183] gi|307306717|ref|ZP_07586459.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica BA175] gi|166221606|sp|A3D9C6|HSLU_SHEB5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043919|sp|A9KYP8|HSLU_SHEB9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802317|sp|B8E6E3|HSLU_SHEB2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|125999264|gb|ABN63339.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS155] gi|160859108|gb|ABX47642.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS195] gi|217496813|gb|ACK45006.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS223] gi|304350034|gb|EFM14439.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS183] gi|306910685|gb|EFN41114.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica BA175] gi|315265814|gb|ADT92667.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella baltica OS678] Length = 442 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/441 (52%), Positives = 315/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL D R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TK+TE+GYVG+ VEQIIRDL D+AI + RE + + R++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKYTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123 Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 NAEERILDAL+ K ++SNTR+VFRKKLR+G++ DKEIDI+VA + Sbjct: 124 EENAEERILDALLPKPKNDWESTETDSSSNTRQVFRKKLREGQLDDKEIDIDVAQPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+MVE +GIVFLDE DKI R +G VSREGVQRDLLPL+EG +V+TK+G + TDHI Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLIEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L+ +DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSANDFKRILTEPHASLTEQYIALMNTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++F+E ID++A A +N +IGARRL TVME+++EDIS+ AS+ VIDA Sbjct: 362 GVKVEFSESGIDSIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASEKSGSAFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|302381136|ref|YP_003816959.1| heat shock protein HslVU, ATPase HslU [Brevundimonas subvibrioides ATCC 15264] gi|302191764|gb|ADK99335.1| heat shock protein HslVU, ATPase subunit HslU [Brevundimonas subvibrioides ATCC 15264] Length = 433 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 253/432 (58%), Positives = 335/432 (77%), Gaps = 1/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SPREIVSELDR+I+GQ DAKRAVA+ALRNRWRR+++P DLRDE+ PKNIL++GPTGVG Sbjct: 3 DLSPREIVSELDRFIVGQDDAKRAVAVALRNRWRRKRVPDDLRDEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL+G+PF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+ +VR++RR VR + Sbjct: 63 KTEIARRLARLSGSPFLKVEATKFTEVGYVGRDVDQIMRDLVEAALLMVRDARRAGVRAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEERILDALVG + TR+ FRKKLR GE+ DKEI++++ADT+S I D+ GG Sbjct: 123 AEAAAEERILDALVGPGSQPATRDAFRKKLRAGEMDDKEIELQLADTASPIQGLDVGGGG 182 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +VG+LNLS++ K +G GR K +R +V+ L+ +ESD+L+D D++ R+++ + EN G Sbjct: 183 NVGLLNLSDMLGK-LGGGRTKSVRTTVRDALQPLLAEESDKLLDQDSLTREALLLAENEG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ R G VSREGVQRDLLPL+EG++VSTKYG + +DH+LFIASGAFH Sbjct: 242 IVFIDEIDKVAGRQDRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKSDHVLFIASGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK+L + DF ILT+ E+NLI Q + L+ TE + L FT D Sbjct: 302 VAKPSDLLPELQGRLPIRVELKALTRDDFVRILTEPEANLIRQNQALLATEDVTLTFTPD 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +++ALAD AV N V +IGARRL TV+ERVLE+ SF ASDL +TV D + VR + + Sbjct: 362 AVEALADAAVAANGAVENIGARRLVTVIERVLEETSFKASDLSGQTVAFDGDAVRGKVAE 421 Query: 426 FPSETDMYHFIL 437 D+ FIL Sbjct: 422 LAKNADLSRFIL 433 >gi|114328901|ref|YP_746058.1| ATP-dependent protease ATP-binding subunit HslU [Granulibacter bethesdensis CGDNIH1] gi|114317075|gb|ABI63135.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Granulibacter bethesdensis CGDNIH1] Length = 438 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/435 (54%), Positives = 330/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +SPREIVSELDR+I+GQ DAKRAVAIALRNRWRRQQLP +R+E++PKNIL++GPTG G Sbjct: 5 TYSPREIVSELDRFIVGQTDAKRAVAIALRNRWRRQQLPEAMREEVVPKNILMIGPTGCG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ ++R++ R V+ Q Sbjct: 65 KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIVRDLVEASLTMLRDTSRRNVQAQ 124 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A + AEER+L ALVG+ A ++TR FR+ LR+GE+ +KEI+I +A S + DIPG Sbjct: 125 AELAAEERLLTALVGEGAAADTRSHFRRMLRNGELEEKEIEISIAAAPSAPPSVDIPGVP 184 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +NL+E+ + G+ R+++ +++V L R+E+DRL+D D + RD+++ EN G Sbjct: 185 PGQAINLTEMMKGMFGN-RQQQKKLTVAAARELLQREEADRLLDNDKLGRDAVEHAENNG 243 Query: 246 IVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 IVF+DE DK+ AR + G+ +SREGVQRDLLP++EG++V+TKYG + TDHILFIASG Sbjct: 244 IVFIDEIDKVCARSTEGGMRGGDISREGVQRDLLPIIEGTTVNTKYGPVKTDHILFIASG 303 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L+ L+++D R IL + E +L+ QY+ L+ TE + LD Sbjct: 304 AFHLAKPSDLLPELQGRLPIRVELQPLSRADMRRILVEPEHSLLKQYQALLGTEQVDLDI 363 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D+IDALAD+A +N V +IGARRL TV+E++LEDISF+A+D + V +DA VR Sbjct: 364 TDDAIDALADLAAEINDRVENIGARRLHTVLEKLLEDISFTAADRAGELVTVDAALVRDR 423 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 424 VAPLAGKADLSRFIL 438 >gi|167649007|ref|YP_001686670.1| ATP-dependent protease ATP-binding subunit HslU [Caulobacter sp. K31] gi|189043906|sp|B0T7A8|HSLU_CAUSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|167351437|gb|ABZ74172.1| heat shock protein HslVU, ATPase subunit HslU [Caulobacter sp. K31] Length = 431 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 251/432 (58%), Positives = 339/432 (78%), Gaps = 3/432 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYI+G +AK+AVA+ALRNRWRR+++PADLRDE+ PKNILL+GPTGVG Sbjct: 3 EFSPREIVSELDRYIVGHTEAKKAVAVALRNRWRRRRVPADLRDEVTPKNILLIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+QI+RDLV+ A+++VR+ RR V+ + Sbjct: 63 KTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVDQIVRDLVESALSMVRDKRRGGVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEERILDAL G +T+ RE FRKKLR GE+ DKE+++++ADT F+IPG Sbjct: 123 AEAAAEERILDALTGPGSTA-ARESFRKKLRAGELDDKEVELQLADTGGG-GMFEIPGQP 180 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +LNLSE+ K G GR K + +V + L+ +ESD+L+D + + ++++++ EN+G Sbjct: 181 GASVLNLSEMM-KSFGGGRTKTHKTTVVGAWAPLIAEESDKLLDQEALTQEALELAENHG 239 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DK+ + G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 240 IVFLDEIDKVASSSQRGGADVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASGAFH 299 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK L + D R ILT+ E+NLI Q++ L+ TEG+ L FTE+ Sbjct: 300 VAKPSDLLPELQGRLPIRVELKGLTRDDLRRILTEPEANLIRQHQALLLTEGVTLVFTEE 359 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +IDA+AD AV +N++V +IGARRLQT++E+V+E+ISF+A+D +TV +DA+YV+ IG Sbjct: 360 AIDAVADAAVAVNASVENIGARRLQTILEKVVEEISFTAADRSGETVTVDADYVQARIGA 419 Query: 426 FPSETDMYHFIL 437 + D+ FIL Sbjct: 420 LAANADLSRFIL 431 >gi|85710347|ref|ZP_01041412.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] gi|85689057|gb|EAQ29061.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] Length = 433 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/436 (53%), Positives = 325/436 (74%), Gaps = 4/436 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L DLRDE+ PKNIL++GPT Sbjct: 1 MTDNLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLGPDLRDEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 G GKT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD V Sbjct: 61 GCGKTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDSV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 RE AS A ER+L ALVG A+ TRE FR+++ ++D E++I+V + S+ + FD+ Sbjct: 121 REAASEAAMERLLTALVGDNASEATRESFRQRITQNAMNDVEVEIDVVEASN--TPFDMG 178 Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G ++ +++LS++ K G KK ++ V + +L+ +E+D+ +D D V + +++ Sbjct: 179 NMGGNMQMIDLSDMMGKAFGKKPTKKRKLRVPDAWDKLVDEEADKRLDDDDVAQTALRNA 238 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDHILFIAS Sbjct: 239 ETNGIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIAS 297 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHV++P+D+LPE+QGR P+RV+L++L + DF IL++T +NL+ QY+ L+ TE + LD Sbjct: 298 GAFHVAKPSDMLPELQGRLPIRVNLRALTQEDFVRILSETRANLVEQYRALIGTEKVELD 357 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 +++ID +A +A +N +V +IGARRLQTVME++LE+ISF A + + +T+ IDA YVR Sbjct: 358 IKKEAIDEVATIAAQVNESVENIGARRLQTVMEKLLEEISFEAEEHEGETITIDAAYVRE 417 Query: 422 HIGDFPSETDMYHFIL 437 +GD + D+ +IL Sbjct: 418 RLGDLAGDADLSKYIL 433 >gi|254995241|ref|ZP_05277431.1| ATP-dependent protease ATP-binding subunit HslU [Anaplasma marginale str. Mississippi] Length = 480 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/437 (53%), Positives = 330/437 (75%), Gaps = 5/437 (1%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T + SPR+I ELDR+I+GQ++AK+AVA ALR+RWRR ++P LRDE++PKNIL++G TG Sbjct: 46 TRDLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTG 105 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E R V Sbjct: 106 VGKTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKVVA 165 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 +QA ++EE IL+ LVG A S + FR++LR GE D EI I V + + +FD+PG Sbjct: 166 KQARKSSEEIILNCLVGVDA-SEAKSAFRERLRSGEFEDSEISISVKENKNVQHSFDVPG 224 Query: 184 --GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G+ VGI+N++E+ K++G ++ K ++ +V++ L+ +E+++LID D + R+++ + Sbjct: 225 MPGSQVGIMNINEIVQKMLGGNKQFKSLKTTVKEAREILLDEETEKLIDEDKIVREALHI 284 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIA Sbjct: 285 ASNEGIVFLDEIDKIAARTEIRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIA 343 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+++P+DLLPE+QGR P+RV LK L + D ILT+ ESNL+ QY+ LM+TEG+ + Sbjct: 344 SGAFHLAKPSDLLPELQGRLPIRVELKPLGRDDLIRILTEPESNLLRQYRALMETEGVNV 403 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +FTED I A+A++A +N V +IGARRL T++E+++EDIS+SAS+ + KT VID ++VR Sbjct: 404 EFTEDGILAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENKGKTYVIDGDHVR 463 Query: 421 LHIGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 464 EKLEDISKQMDLSKFIL 480 >gi|114045943|ref|YP_736493.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp. MR-7] gi|123326942|sp|Q0HZL9|HSLU_SHESR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|113887385|gb|ABI41436.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-7] Length = 442 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/441 (52%), Positives = 314/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123 Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 +AEERILDAL+ K A SNTR++FRKKLR+G++ DKEIDI+VA I Sbjct: 124 EEHAEERILDALLPKPKNDWDSTDSDANSNTRQIFRKKLREGQLDDKEIDIDVAQPQVGI 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++F E I+++A A +N +IGARRL TVME+++EDIS+ ASD + VIDA Sbjct: 362 GVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|89093515|ref|ZP_01166463.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp. MED92] gi|89082205|gb|EAR61429.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp. MED92] Length = 444 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/444 (52%), Positives = 321/444 (72%), Gaps = 14/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELDR+IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVSELDRHIIGQDEAKRSVAIALRNRWRRMQLDEELRVEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD+AI ++RE ++VR + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVETIIRDLVDMAIKMMREQEMEKVRFR 122 Query: 126 ASINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 A AEER+LDAL+ K+ S TR+VFRKKLR+G++ DKEIDIE+A Sbjct: 123 AEEAAEERVLDALLPPARPTGFGEEPAKSEDSATRQVFRKKLREGQLDDKEIDIEIAQPQ 182 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L +FS MG G+K++ RM ++ + L +E+ L+ D + Sbjct: 183 MGVEIMAPPGMEEM-TNQLQSMFSG-MGGGKKQQRRMKIKDAFKMLTDEEAANLVKEDEL 240 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++++++VE +GIVFLDE DK+ S + VSREGVQRDLLPL+EG +VSTKYG + T Sbjct: 241 KQNAVELVEQHGIVFLDEIDKVCKGGSNSSGDVSREGVQRDLLPLIEGCTVSTKYGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+++P+DL+PE+QGR P+RV L +L DFR IL + ++L QY+ L+ Sbjct: 301 DHILFIASGAFHLAKPSDLIPELQGRLPIRVELNALTPDDFRRILKEPNASLTQQYQALL 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ + FT++ I +A++A ++N + +IGARRL T+MER+LE++SF+ASD +T+ Sbjct: 361 KTEGVDVVFTDEGISRIAELAFDVNESTENIGARRLHTMMERLLEELSFAASDCNGQTIT 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +D +V + + + D+ H+IL Sbjct: 421 VDKAFVDQQLSELSKDEDLSHYIL 444 >gi|24375649|ref|NP_719692.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis MR-1] gi|32129630|sp|Q8E9U9|HSLU_SHEON RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|24350563|gb|AAN57136.1|AE015849_3 heat shock protein HslVU, ATPase subunit HslU [Shewanella oneidensis MR-1] Length = 440 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/439 (53%), Positives = 313/439 (71%), Gaps = 10/439 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123 Query: 127 SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 +AEERILDAL+ K + SNTR++FRKKLR+ ++ DKEIDI+VA I Sbjct: 124 EEHAEERILDALLPKPKNDWDDSDSNSNTRQIFRKKLRESQLDDKEIDIDVAQPQIGIEI 183 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + +I Sbjct: 184 MSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQAI 241 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 ++VE GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHILF Sbjct: 242 ELVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHILF 301 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L QY LM TEG+ Sbjct: 302 IASGAFQMSKPSDLIPELQGRLPIRVELDALTADDFKRILTEPHASLTEQYIALMATEGV 361 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 I++FTE I+++A A +N +IGARRL TVME+++EDIS+ ASD + VIDA+Y Sbjct: 362 IIEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDADY 421 Query: 419 VRLHIGDFPSETDMYHFIL 437 V H+ + + D+ FIL Sbjct: 422 VSAHLDNLVQDEDLSRFIL 440 >gi|88607388|ref|YP_505627.1| ATP-dependent protease ATP-binding subunit [Anaplasma phagocytophilum HZ] gi|88598451|gb|ABD43921.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Anaplasma phagocytophilum HZ] Length = 437 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/436 (53%), Positives = 326/436 (74%), Gaps = 5/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SP++I ELDR+I+GQ +AKRAVA ALR+RWRR ++P LRDE++PKNIL++G TGVG Sbjct: 3 DLSPKQITKELDRFIVGQTEAKRAVANALRSRWRRNRVPQPLRDEIIPKNILMIGHTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E R VR+Q Sbjct: 63 KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKYRKVVRKQ 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG- 183 A +AE+ IL+ LVG A+ T+ FR KLR GE + EI I V D + +FD+PG Sbjct: 123 ARKSAEDIILNCLVGADASEETKNAFRHKLRAGEYENSEISINVKDNRKSMPPSFDVPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGR-KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G VGI+N++E+ KV+G + + I +V++ L+ +E+++LID D + R+++ + Sbjct: 183 PGGQVGIMNINEIVQKVLGGNKLSRTISTTVKEAREILLDEETEKLIDEDKIVREALHIA 242 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIAS Sbjct: 243 SNEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIAS 301 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DLLPE+QGR P+RV L+ L++ D ILT+ E+NL+ QY+ L++TEG+ ++ Sbjct: 302 GAFHLAKPSDLLPELQGRLPIRVELQPLSRDDLVRILTEPEANLLKQYRALLETEGVTVE 361 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FTED I A+A++A +N V +IGARRL T+ME+++EDIS++AS+ +T VID ++VR Sbjct: 362 FTEDGIFAIAEIASTVNREVENIGARRLHTIMEKLMEDISYNASENSGQTFVIDEKHVRE 421 Query: 422 HIGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 422 RLEDISKQLDLSKFIL 437 >gi|332187394|ref|ZP_08389132.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp. S17] gi|332012555|gb|EGI54622.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp. S17] Length = 428 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 241/432 (55%), Positives = 316/432 (73%), Gaps = 5/432 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ IV+ LD +IIGQ DAKRAVA+A+RNRWRRQ+L ADLRDE+ PKNIL++GPTG GK Sbjct: 1 MTPKAIVAALDAHIIGQADAKRAVAVAMRNRWRRQRLGADLRDEVTPKNILMIGPTGCGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RR V+++A Sbjct: 61 TEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRVAVKDKA 120 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186 A R+LDALVGK ++ TRE FR + RDG + EI+IE+ + F+IPG A Sbjct: 121 EEAAMNRLLDALVGKDSSQATREAFRLRFRDGHLDQTEIEIELEQAPA--MPFEIPGAAP 178 Query: 187 VGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 ++NLSE+ K G G+ K+ +++V + +L+ +E+D+ +D D V R ++ E G Sbjct: 179 -QMINLSEMMGKAFGGGQPLKRRKLTVGAAWTKLVEEEADKRLDQDEVSRAALADAEANG 237 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVFLDE DKI D G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASGAFH Sbjct: 238 IVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHILFIASGAFH 296 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 V++P+DLLPE+QGR P+RV LK+L + DF IL+DT+++L QYK L+ TEG+ + FTED Sbjct: 297 VAKPSDLLPELQGRLPIRVELKALTEGDFVAILSDTKASLPAQYKALIGTEGVEISFTED 356 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 I A+A +A +N+ V +IGARRLQTVME++LEDISF A D Q T+ IDA YV + Sbjct: 357 GIAAIARIAAEVNAQVENIGARRLQTVMEKLLEDISFEAEDRQGTTLTIDAAYVDSQLSA 416 Query: 426 FPSETDMYHFIL 437 TD+ F+L Sbjct: 417 VARNTDLSRFVL 428 >gi|113971851|ref|YP_735644.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp. MR-4] gi|117922132|ref|YP_871324.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp. ANA-3] gi|123130042|sp|Q0HED0|HSLU_SHESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221610|sp|A0L1J9|HSLU_SHESA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|113886535|gb|ABI40587.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. MR-4] gi|117614464|gb|ABK49918.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. ANA-3] Length = 442 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/441 (52%), Positives = 314/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRA 123 Query: 127 SINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 +AEERILDAL+ K +SNTR++FRKKLR+G++ DKEIDI+VA I Sbjct: 124 EEHAEERILDALLPKPKNDWDNTDSDTSSNTRQIFRKKLREGQLDDKEIDIDVAQPQVGI 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIELVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYIALMATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++F E I+++A A +N +IGARRL TVME+++EDIS+ ASD + VIDA Sbjct: 362 GVTIEFAESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|70733940|ref|YP_257580.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas fluorescens Pf-5] gi|123748567|sp|Q4KJK3|HSLU_PSEF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|68348239|gb|AAY95845.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas fluorescens Pf-5] Length = 446 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 237/450 (52%), Positives = 321/450 (71%), Gaps = 21/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI + RE VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMFREQEMIRVRH 120 Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172 +A AEERILDAL+ + T SNTR++FRK+LR+G++ DKEI+IEVA+ Sbjct: 121 RAEDAAEERILDALLPQARTGFNSDDAAPAQDSNTRQLFRKRLREGQLDDKEIEIEVAEA 180 Query: 173 SS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + DIS P G L LF+ MG G++K ++ V++ + +E+ RL++ + Sbjct: 181 AGVDIS---APPGMEEMTNQLQSLFAN-MGKGKRKNRKLKVKEALKLVRDEEASRLVNDE 236 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 ELKAKALEAVEQHGIVFIDEIDKVAKRGNAGGVDVSREGVQRDLLPLIEGCTVNTKLGMV 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+E Sbjct: 297 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYRE 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---- 407 L+KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LLKTEGLNIEFLPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 416 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+ + IDA YV H+G+ D+ +IL Sbjct: 417 SEEPIRIDAAYVNSHLGELAQNEDLSRYIL 446 >gi|167625772|ref|YP_001676066.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella halifaxensis HAW-EB4] gi|189043920|sp|B0TVV4|HSLU_SHEHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|167355794|gb|ABZ78407.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella halifaxensis HAW-EB4] Length = 441 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/441 (53%), Positives = 312/441 (70%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG Sbjct: 3 EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + + + + Sbjct: 63 KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122 Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILDAL+ K S TR++FRKKLR+G++ DKEI+I+V+ + I Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F MG G K+ +M +++ Y L+ +E+ +LI+ + + Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALSAGDFKRILTEPHASLTEQYIALMGTE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FTED ID++A+ A +N +IGARRL TVMER++E++SF ASD VIDA Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSFEASDKSGSVTVIDA 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV+ + + + D+ +IL Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441 >gi|120600432|ref|YP_965006.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella sp. W3-18-1] gi|166221611|sp|A1RP57|HSLU_SHESW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120560525|gb|ABM26452.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sp. W3-18-1] gi|319424864|gb|ADV52938.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella putrefaciens 200] Length = 442 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/441 (53%), Positives = 312/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R+ A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQLA 123 Query: 127 SINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 +AEERILDAL+ K SNTR++FRKKLR+G++ DKEIDI+VA I Sbjct: 124 EEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIGI 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+MVE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FTE I+++A A +N +IGARRL TVME+++EDIS+ ASD VIDA Sbjct: 362 GVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|269958525|ref|YP_003328312.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str. Israel] gi|269848354|gb|ACZ48998.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str. Israel] Length = 483 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/435 (52%), Positives = 330/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SPR+I ELDR+I+GQ++AK+AVA ALR+RWRR ++P LRDE++PKNIL++G TGVG Sbjct: 50 DLSPRQITRELDRFIVGQEEAKKAVANALRSRWRRNRVPLPLRDEIIPKNILMIGHTGVG 109 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTEIGYVGR+V+ I+RDLVD A+ +V+E R V +Q Sbjct: 110 KTEIARRLAKLAQAPFIKVEATKFTEIGYVGRDVDSIMRDLVDRAVLLVKEKHRKIVAKQ 169 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A ++EE IL+ LVG A+ T+ FR++LR GE D EI I V + + +FD+PG Sbjct: 170 ARKSSEEIILNCLVGVDASEETKSTFRERLRAGEFEDSEISISVKENKNVQHSFDVPGMP 229 Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G+ VGI+N++E+ K++G ++ K ++ +V++ L+ +E+++LID D + R+++ + Sbjct: 230 GSQVGIMNINEIVQKMLGGNKQFKTLKTTVREAREILLDEETEKLIDEDKIVREALHIAS 289 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG+SVSTKYG++ TDH+LFIASG Sbjct: 290 NEGIVFLDEIDKIAARTEVRG-EVNREGVQRDLLPLLEGTSVSTKYGTVTTDHVLFIASG 348 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+++P+DLLPE+QGR P+RV L+ L++ D ILT+ ESNL+ QY+ LM+TEG+ ++F Sbjct: 349 AFHLAKPSDLLPELQGRLPIRVELQPLSRDDLIRILTEPESNLLRQYRALMETEGVNVEF 408 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 TE+ + A+A++A +N V +IGARRL T++E+++EDIS+SAS+ + KT +ID +V+ Sbjct: 409 TENGVLAIAEIASTVNREVENIGARRLHTILEKLMEDISYSASENRGKTYIIDEGHVKEK 468 Query: 423 IGDFPSETDMYHFIL 437 + D + D+ FIL Sbjct: 469 LEDISKQMDLSKFIL 483 >gi|310817174|ref|YP_003965138.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium vulgare Y25] gi|308755909|gb|ADO43838.1| heat shock protein HslVU, ATPase subunit HslU [Ketogulonicigenium vulgare Y25] Length = 442 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/442 (54%), Positives = 323/442 (73%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV+ LDR+I+GQ DAKRAVA+ALR+RWRR L +RDE+ PKNIL++GPTGVG Sbjct: 3 DLTPRQIVAALDRHIVGQHDAKRAVAVALRSRWRRNHLDDAMRDEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQIIRDLVD AI RE R +VR++ Sbjct: 63 KTEISRRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLVDAAIIETREYMRADVRQR 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A +AEER++ A+ G+ A TRE+FR+KLR+GE+ EI+IEV DT++ F++PG Sbjct: 123 AVASAEERVISAIAGEGAREQTREMFRQKLRNGELDGTEIEIEVPDTAAQ-PQFELPGQP 181 Query: 186 SVG-ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +G ++NL ++F K G+ R KK R++V + + L+ DE+D+L+D + V +++ V+ Sbjct: 182 GMGNMVNLGDIFGKAFGARRVKK-RLTVAESHDALLNDEADKLLDDEAVKVAALKAVQES 240 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVF+DE DK+ AR G VSREGVQRDLLPL+EG++VSTK+G + TDHILFIASGAF Sbjct: 241 GIVFIDEIDKVAARSDARGADVSREGVQRDLLPLIEGTTVSTKHGPVKTDHILFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI---------LQYKELMKT 355 HV++P+DLLPE+QGR P+RV L +L + DF ILT+TE+ L QY LM T Sbjct: 301 HVAKPSDLLPELQGRLPIRVELTALTEDDFIRILTETENALTRQYTALTLPRQYTALMAT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I A+A +A +N +V +IGARRL TV+ERV ED+SF A + + VVID Sbjct: 361 EDVDVSFTEDGIAAIARIAAEVNQSVENIGARRLYTVIERVFEDLSFDAPEQSGQQVVID 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV H+G ++D+ ++L Sbjct: 421 GAYVDRHLGQLARQSDLSRYVL 442 >gi|148260411|ref|YP_001234538.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum JF-5] gi|326403603|ref|YP_004283685.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum AIU301] gi|146402092|gb|ABQ30619.1| heat shock protein HslVU, ATPase subunit HslU [Acidiphilium cryptum JF-5] gi|325050465|dbj|BAJ80803.1| ATP-dependent protease ATPase subunit HslU [Acidiphilium multivorum AIU301] Length = 439 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 247/435 (56%), Positives = 329/435 (75%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 ++PREIVSELDR+I+GQQDAKRAVAIALRNRWRRQQLP LR+E++PKNIL++GPTG G Sbjct: 6 TYTPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQLPEGLREEVVPKNILMIGPTGCG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV+V+I ++R+ R V+ + Sbjct: 66 KTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVEVSITMLRDMSRKGVQAR 125 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPGG 184 A + AE+R+L ALVG+ A+S TR FR+ LRDGE+ +KEID++V++ + I D+PG Sbjct: 126 AELAAEDRLLTALVGEGASSETRNRFRRMLRDGEMEEKEIDVDVSEAPPNVIGQMDMPGM 185 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 G +NL ++ + G +K RM+V L R+E+DRL+D + + D+ E + Sbjct: 186 PPGGAINLGDMMKSMFGRQHGRK-RMTVAAARAALEREEADRLLDNEQLTADARLHAETH 244 Query: 245 GIVFLDEFDKIVAR-DSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVFLDE DKI AR +SG G VSREGVQRDLLPL+EG++VSTKYG + TDHILFIASG Sbjct: 245 GIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVSTKYGPVKTDHILFIASG 304 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHV++P+DLLPE+QGR P+RV L SL++ DFR ILT+ E +L+ QY LMKTE + L F Sbjct: 305 AFHVAKPSDLLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDLHF 364 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D++DA+A +A ++N V +IGARRL TV+ER+LE+ISF+A+D +TV +DA V Sbjct: 365 TDDAVDAVAALAADINDRVENIGARRLATVLERLLEEISFAATDRAGETVTVDAALVNDK 424 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 425 VAPLAARGDLGRFIL 439 >gi|157963594|ref|YP_001503628.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella pealeana ATCC 700345] gi|189043921|sp|A8H956|HSLU_SHEPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157848594|gb|ABV89093.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella pealeana ATCC 700345] Length = 441 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/441 (53%), Positives = 311/441 (70%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG Sbjct: 3 EMTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + + + + Sbjct: 63 KTEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQIKKCKFR 122 Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILDAL+ K S TR++FRKKLR+G++ DKEI+I+V+ + I Sbjct: 123 AEEAAEERILDALLPKPKEDWDSEKSDGSATRQIFRKKLREGQLDDKEIEIDVSAPQAGI 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F MG G K+ +M +++ Y L+ +E+ +LI+ + + Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLLIEEEASKLINQEDLKEQ 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 241 AIELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L QY LM TE Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELDALTAGDFKRILTEPHASLTEQYIALMGTE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FTED ID++A+ A +N +IGARRL TVMER++E++S+ ASD VIDA Sbjct: 361 GVTIEFTEDGIDSIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVIDA 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV+ + + + D+ +IL Sbjct: 421 AYVKASLDNLVQDEDLSRYIL 441 >gi|226946555|ref|YP_002801628.1| ATP-dependent protease ATP-binding subunit HslU [Azotobacter vinelandii DJ] gi|259491368|sp|C1DHS0|HSLU_AZOVD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|226721482|gb|ACO80653.1| heat shock protein HslU [Azotobacter vinelandii DJ] Length = 446 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/448 (52%), Positives = 316/448 (70%), Gaps = 17/448 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+I+GQ+DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIVGQEDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMMREQEIQRVRH 120 Query: 125 QASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ SNTR++FRK+LR+G++ DKEIDIE+ +T Sbjct: 121 RAEDAAEDRILDALLPPARQGFGDEPIAREDSNTRQLFRKRLREGQLDDKEIDIEITETP 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 S + PG + L LFS MG GRKK ++ V+ + +E+ RL++ + + Sbjct: 181 SGVEIMAPPGMEEM-TSQLQNLFSS-MGKGRKKTHKLKVKDALKLVRDEEAARLVNEEEL 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++ VE GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + T Sbjct: 239 KARALESVEQNGIVFIDEIDKVAKRANVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L DF ILT+ ++L QY+EL+ Sbjct: 299 DHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALTPEDFERILTEPHASLTEQYRELL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE---- 409 KTEG+ + F D I +A++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 359 KTEGLNIQFAADGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAADHSG 418 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +VIDA YV H+G+ + D+ +IL Sbjct: 419 QPIVIDAAYVNNHLGELAQDEDLSRYIL 446 >gi|166710520|ref|ZP_02241727.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 447 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/451 (52%), Positives = 326/451 (72%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D +I + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSIKLYREQAKARVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + AT ++TR FR+ LR+GE+ ++EI++EV Sbjct: 121 EERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F +D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|190571157|ref|YP_001975515.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018561|ref|ZP_03334369.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357429|emb|CAQ54863.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995512|gb|EEB56152.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 483 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P LR+E++PKNIL++G TGVG Sbjct: 50 DLPPQKIVKELDRFIIGQNDAKRAVAIALRNRWRRNKVPLPLREEIIPKNILMIGHTGVG 109 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ IIRDLVD AI +V+E R + ++ Sbjct: 110 KTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALTKK 169 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+ I++++VG+ AT +++VFR++LR+ E D E+ I V ++ + FDIPG Sbjct: 170 ALGLAEKIIVNSMVGEDATEESKKVFRERLRNKEFEDGEVSINVRESKGMLPTFDIPGMP 229 Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G +G++N++E+ K+ G+ + K I + V++ L+ +ES+RL+D D + +++I +V Sbjct: 230 GGQIGVMNVTEIVGKMFNGNKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 289 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG++VSTKYG + TD+ILFIASG Sbjct: 290 NEGIVFLDEIDKIAARTEIKG-EVNREGVQRDLLPLLEGTTVSTKYGPVKTDYILFIASG 348 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+S+P+DLLPE+QGR P+RV LK+L + D IL + ES+L+ QY LMKTE + L+F Sbjct: 349 AFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVTLEF 408 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I+ +A++A +N V +IGARRL TVME++L++ISF AS+ + VID++YVR Sbjct: 409 TDDGIETIAEIAFTVNREVENIGARRLHTVMEKLLDEISFIASEKNSEKFVIDSKYVRDK 468 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 469 LESISKQLDLSKFIL 483 >gi|58696800|ref|ZP_00372331.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila simulans] gi|58698623|ref|ZP_00373519.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] gi|225630856|ref|YP_002727647.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi] gi|58534868|gb|EAL58971.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] gi|58537009|gb|EAL60157.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila simulans] gi|225592837|gb|ACN95856.1| ATP-dependent protease, ATP-binding subunit [Wolbachia sp. wRi] Length = 496 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P LRDE++PKNIL++G TGVG Sbjct: 63 DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E R + ++ Sbjct: 123 KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 182 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AE+ I++++VG+ AT ++++FR++LR+ E D E+ I V ++ S + FDIPG Sbjct: 183 ALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242 Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G VG++N++E+ K+ GS + K I + V++ L+ +ES+RL+D D + +++I +V Sbjct: 243 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG Sbjct: 303 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 361 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH S+P+DLLPE+QGR P+RV LK+L + D IL + ES+L+ QY LMKTE + L+F Sbjct: 362 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 421 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +A++A +N V +IGARRL TVME++L++ISF AS+ + +ID++YV+ Sbjct: 422 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 481 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 482 LESISKQLDLSKFIL 496 >gi|21241409|ref|NP_640991.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas axonopodis pv. citri str. 306] gi|23821710|sp|Q8PPP7|HSLU_XANAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21106744|gb|AAM35527.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas axonopodis pv. citri str. 306] Length = 455 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/454 (51%), Positives = 325/454 (71%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 6 TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Sbjct: 66 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVR 125 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+RILDAL+ + AT ++TR FR+ LR+GE+ ++EI+ Sbjct: 126 NQAEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIE 185 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +EVA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 +L++ D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+ Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 362 ALIKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|127511308|ref|YP_001092505.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica PV-4] gi|166221608|sp|A3Q9U8|HSLU_SHELP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|126636603|gb|ABO22246.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella loihica PV-4] Length = 441 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/440 (52%), Positives = 313/440 (71%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ+AKR+VAIALRNRWRR QL A LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQQNAKRSVAIALRNRWRRMQLDAALRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE + + + +A Sbjct: 64 TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDAAVKLTREEQMAKCKFRA 123 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K + TR+VFRKKLR+G++ DKEI+I++A I Sbjct: 124 EEAAEERILDALLPKPKEDWDTEKKDDTGTRQVFRKKLREGQLDDKEIEIDIAAPQVGIE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F MG G K+ +M++++ Y L+ +E+ +L++ D + + Sbjct: 184 IMSPPGMEEM-TSQLQSMFQN-MGPGASKRRKMTIKEAYKLLIEEEAAKLVNPDDLKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ ++L QY LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELEALSANDFKRILTEPHASLTEQYVALMATEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++F+E I+ +A A +N +IGARRL TVMER++ED+SF ASD T VIDA+ Sbjct: 362 VKVEFSESGIERIAQAAWQVNERTENIGARRLHTVMERLMEDLSFEASDKSGSTTVIDAD 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + + D+ FIL Sbjct: 422 YVNAHLENLVQDEDLSRFIL 441 >gi|307546359|ref|YP_003898838.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] gi|307218383|emb|CBV43653.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] Length = 440 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 244/442 (55%), Positives = 316/442 (71%), Gaps = 14/442 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV LD+YIIGQQDAKRAVA ALRNRWRR QL +LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVHALDQYIIGQQDAKRAVASALRNRWRRMQLDEELRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPFIK+E TKFTE+GYVGR+VE IIRDL + AI +VRE +DEVR + Sbjct: 63 KTEIARRLAKLSGAPFIKIEATKFTEVGYVGRDVESIIRDLTEAAIKLVREQAKDEVRHR 122 Query: 126 ASINAEERILDALV-------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 A AE+RILDAL+ G+ T N TR+ FRKKLR+G++ DKEIDIEV S + Sbjct: 123 AEDAAEDRILDALLPPPRGQEGQPRTDNATRQAFRKKLREGQLDDKEIDIEVTPQSQGVD 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L LFS MG + + R++V+ + L +E+ +L++ D + + + Sbjct: 183 IMTPPGMEEM-TSQLQNLFSS-MGKQKTETRRVAVKDAFALLRDEEAAKLVNEDDIKQRA 240 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 I+ VE +GIVFLDE DK VA+ SG G VSREGVQRDLLPL+EGSSVSTK+G + TDH Sbjct: 241 IEAVEQHGIVFLDELDK-VAKGSGQSSGGEVSREGVQRDLLPLIEGSSVSTKHGMVKTDH 299 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+SRP+DL+PE+QGR P+RV L +L DF+ ILT+ + L QY L+ T Sbjct: 300 ILFIASGAFHLSRPSDLIPELQGRLPIRVELNALTPDDFKRILTEPSAALTRQYTALLAT 359 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FT+D I+ +A++A +N +IGARRL TVMER+LED SF SDL E T+ ID Sbjct: 360 EDLKVEFTDDGIERIAEIAWKVNEGTENIGARRLHTVMERLLEDASFKGSDLGE-TLTID 418 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ + D+ +IL Sbjct: 419 AAYVDSQLGELAMDEDLSRYIL 440 >gi|42520987|ref|NP_966902.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410728|gb|AAS14836.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila melanogaster] Length = 437 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P LRDE++PKNIL++G TGVG Sbjct: 4 DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E R + ++ Sbjct: 64 KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AE+ I++++VG+ AT ++++FR++LR+ E D E+ I V ++ S + FDIPG Sbjct: 124 ALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 183 Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G VG++N++E+ K+ GS + K I + V++ L+ +ES+RL+D D + +++I +V Sbjct: 184 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 243 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG Sbjct: 244 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 302 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH S+P+DLLPE+QGR P+RV LK+L + D IL + ES+L+ QY LMKTE + L+F Sbjct: 303 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 362 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +A++A +N V +IGARRL TVME++L++ISF AS+ + +ID++YV+ Sbjct: 363 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 422 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 423 LESISKQLDLSKFIL 437 >gi|146291635|ref|YP_001182059.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella putrefaciens CN-32] gi|166221609|sp|A4Y2S7|HSLU_SHEPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145563325|gb|ABP74260.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella putrefaciens CN-32] Length = 442 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/441 (52%), Positives = 311/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ+ AKR+VA+ALRNRWRR QL D R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D+AI + RE + + R+ A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQLA 123 Query: 127 SINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 +AEERILDAL+ K SNTR++FRKKLR+G++ DKEIDI+VA I Sbjct: 124 EEHAEERILDALLPKPKNDWESTDTDTGSNTRQIFRKKLREGQLDDKEIDIDVAQPQIGI 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF K MG K+ +M +++ + L+ +E+ +L++ + + Sbjct: 184 EIMSPPGMEEM-TNQLQSLF-KNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+MVE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIEMVEQHGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L QY LM TE Sbjct: 302 LFIASGAFQMAKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQYVALMGTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FTE I+++A A +N +IGARRL TVME+++EDIS+ ASD VIDA Sbjct: 362 GVKVEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSAFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ + + D+ FIL Sbjct: 422 DYVSAHLDNLVQDEDLSRFIL 442 >gi|212633356|ref|YP_002309881.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella piezotolerans WP3] gi|226704531|sp|B8CI18|HSLU_SHEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|212554840|gb|ACJ27294.1| Heat shock protein HslU [Shewanella piezotolerans WP3] Length = 441 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 232/440 (52%), Positives = 314/440 (71%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ AKR+VAIALRNRWRR QL ADLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQQKAKRSVAIALRNRWRRMQLAADLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + + + +A Sbjct: 64 TEIARRLARLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMAKCKFRA 123 Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K + + TR+VFRKKLR+G++ DKEI+I++A + I Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPSDNATRQVFRKKLREGQLDDKEIEIDIAAPQAGIE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F MG G K+ +M +++ + L+ +E+ +L++ D + + Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAHKLLIEEEAAKLVNADDLKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L++L+ DF+ ILT+ ++L QY LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELEALSADDFKRILTEPHASLTEQYVALMGTEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++F + IDA+A+ A +N +IGARRL TVMER++E++S+ ASD V+DA+ Sbjct: 362 VEVEFKDSGIDAIAEAAWQVNERTENIGARRLHTVMERLMEELSYEASDKSGSVTVVDAD 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV+ H+ + + D+ FIL Sbjct: 422 YVKAHLDNLVQDEDLSRFIL 441 >gi|330938647|gb|EGH42213.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. pisi str. 1704B] Length = 445 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 235/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ +++ SNTR++FRK+LR+G++ DKEI+IE+ +T Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINETV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|225677227|ref|ZP_03788220.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590751|gb|EEH11985.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 496 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/435 (53%), Positives = 326/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P++IV ELDR+IIGQ DAKRAVAIALRNRWRR Q+P LRDE++PKNIL++G TGVG Sbjct: 63 DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E R + ++ Sbjct: 123 KTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKK 182 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A I AE+ I++++VG+ AT ++++FR++LR+ E D E+ I V ++ S + FDIPG Sbjct: 183 ALILAEKTIVNSMVGEDATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242 Query: 184 GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G VG++N++E+ K+ GS + K I + V++ L+ +ES+RL+D D + +++I +V Sbjct: 243 GGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG++V+TKYG + TD+ILFIASG Sbjct: 303 NDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVTTKYGHVKTDYILFIASG 361 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH S+P+DLLPE+QGR P+RV LK+L + D IL + ES+L+ QY LMKTE + L+F Sbjct: 362 AFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKEPESSLLKQYIALMKTENVTLEF 421 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I +A++A +N V +IGARRL TVME++L++ISF AS+ + +ID++YV+ Sbjct: 422 TDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEISFIASEKNSEKFIIDSKYVKDK 481 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 482 LESISKQPDLSKFIL 496 >gi|182681293|ref|YP_001829453.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa M23] gi|238691118|sp|B2IA20|HSLU_XYLF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|182631403|gb|ACB92179.1| heat shock protein HslVU, ATPase subunit HslU [Xylella fastidiosa M23] gi|307579744|gb|ADN63713.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa subsp. fastidiosa GB514] Length = 459 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 237/453 (52%), Positives = 328/453 (72%), Gaps = 25/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 11 TMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE + VR Q Sbjct: 71 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130 Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166 A AEERILDAL+ + + S TR FR+ LR GE+ ++EI+ Sbjct: 131 AEEYAEERILDALLPRRSVGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEEREIE 190 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS + G G+ +K +++++ P L+ +E+ Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLAIKAARPLLIEEEAA 246 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284 +L++ D + +I+ E GIVF+DE DK+V R D+ G VSREGVQRDLLPLVEGS+V Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+EL+KTEG+ LDFTED+ID +A++A +N +IGARRL TV+ER+LE +S+ + Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA+YV H+G+ + D+ +IL Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459 >gi|294666815|ref|ZP_06732048.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603399|gb|EFF46817.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 455 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/452 (51%), Positives = 324/452 (71%), Gaps = 24/452 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 8 TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 67 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Q Sbjct: 68 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRNQ 127 Query: 126 ASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIE 168 A AE+RILDAL+ + AT ++TR FR+ LR+GE+ ++EI++E Sbjct: 128 AEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELE 187 Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 VA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L Sbjct: 188 VAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKL 243 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS 285 ++ D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+VS Sbjct: 244 VNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVS 303 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ L Sbjct: 304 TKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAAL 363 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 I QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A Sbjct: 364 IKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAP 423 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA YV +G+ + D+ +IL Sbjct: 424 DRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|149187079|ref|ZP_01865385.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. SD-21] gi|148829290|gb|EDL47735.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. SD-21] Length = 432 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 236/433 (54%), Positives = 324/433 (74%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+ IV+ LD +IIGQ+DAKRAVA+ALRNRWRRQ+L DLRDE+ PKNIL++GPTG G Sbjct: 3 NLTPKAIVAALDEHIIGQKDAKRAVAVALRNRWRRQRLDRDLRDEVTPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + +E RR+ VR+ Sbjct: 63 KTEISRRLAKLAEAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKERRREAVRDT 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 AS A ER+L+ALVG+ A+ TRE FR+++ ++D E++I+V D SN +IPG Sbjct: 123 ASQAAMERLLNALVGENASEATREAFRERIVQNAMNDTEVEIDVKDHPQ--SNMEIPGMP 180 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +VG+++LS++ K MG K+ ++ V + L+ +E+++ +D D V+R +++ E Sbjct: 181 GNVGMIDLSDMLGKAMGKSNLKRRKLKVPDAWDRLVEEEAEKRMDQDDVNRVALENAETN 240 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASGAF Sbjct: 241 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASGAF 299 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HVS+P+D+LPE+QGR P+RV L++L + DF ILT+T +NL+ QYK L+ TE + LD T+ Sbjct: 300 HVSKPSDMLPELQGRLPIRVELRALTEEDFVRILTETRANLVQQYKALIGTEEVTLDITD 359 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D+I +A +A +N +V +IGARRLQTVMER+LEDISF A + + +T+ +DA YVR + Sbjct: 360 DAITEVAKIAARVNESVENIGARRLQTVMERLLEDISFEAEEHKGETITVDAAYVRERLD 419 Query: 425 DFPSETDMYHFIL 437 D +TD+ +IL Sbjct: 420 DLSGDTDLSKYIL 432 >gi|163750991|ref|ZP_02158223.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] gi|161329281|gb|EDQ00279.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] Length = 441 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/441 (52%), Positives = 313/441 (70%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD +IIGQQDAKRAVAIALRNRWRR QL ADLR E+ PKNIL++GPTGVG Sbjct: 3 EMTPREIVHELDSHIIGQQDAKRAVAIALRNRWRRMQLDADLRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE + + + Sbjct: 63 KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKCKVR 122 Query: 126 ASINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILDAL+ K S TR++FRKKLR+G++ DKEI+I+V+ I Sbjct: 123 AEAAAEERILDALLPKPKEDWDSETKDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQVGI 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F MG G K+ +M +++ Y ++ +E+ +L++ + + Sbjct: 183 EIMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDLKEQ 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 241 AIELVEQHGIVFLDEIDKICRRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L Q+ LM TE Sbjct: 301 LFIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQHIALMATE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I+A+A A +N +IGARRL TVMER++E+IS++ASD ++ID Sbjct: 361 GVKIEFTKDGIEAIARAAWQVNERTENIGARRLHTVMERLMEEISYAASDSSGTELLIDE 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV+ H+ + + D+ FIL Sbjct: 421 KYVKDHLDELVQDEDLSRFIL 441 >gi|71274746|ref|ZP_00651034.1| Heat shock protein HslU [Xylella fastidiosa Dixon] gi|71901198|ref|ZP_00683301.1| Heat shock protein HslU [Xylella fastidiosa Ann-1] gi|71164478|gb|EAO14192.1| Heat shock protein HslU [Xylella fastidiosa Dixon] gi|71729042|gb|EAO31170.1| Heat shock protein HslU [Xylella fastidiosa Ann-1] Length = 461 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 236/455 (51%), Positives = 326/455 (71%), Gaps = 27/455 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 11 TMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE + VR Q Sbjct: 71 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130 Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166 AEERILDAL+ + + S TR FR+ LR GE+ D+EI+ Sbjct: 131 VEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDREIE 190 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS + G G+ +K +++++ P L+ +E+ Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGS 282 +L++ D + +I+ E GIVF+DE DK+V R G + VSREGVQRDLLPLVEGS Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSVSREGVQRDLLPLVEGS 306 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +VSTKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ + Sbjct: 307 NVSTKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPK 366 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + L QY+EL+KTEG+ LDFTED+ID +A++A +N +IGARRL TV+ER+LE +S+ Sbjct: 367 AALTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSY 426 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + D ++V +DA+YV H+G+ + D+ +IL Sbjct: 427 ESPDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 461 >gi|15600247|ref|NP_253741.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas aeruginosa PAO1] gi|107104154|ref|ZP_01368072.1| hypothetical protein PaerPA_01005227 [Pseudomonas aeruginosa PACS2] gi|116053202|ref|YP_793523.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas aeruginosa UCBPP-PA14] gi|218894153|ref|YP_002443022.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas aeruginosa LESB58] gi|254238239|ref|ZP_04931562.1| heat shock protein HslU [Pseudomonas aeruginosa C3719] gi|254244064|ref|ZP_04937386.1| heat shock protein HslU [Pseudomonas aeruginosa 2192] gi|296391901|ref|ZP_06881376.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas aeruginosa PAb1] gi|313110092|ref|ZP_07795994.1| heat shock protein HslU [Pseudomonas aeruginosa 39016] gi|21759207|sp|Q9HUC5|HSLU_PSEAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|122256783|sp|Q02EW3|HSLU_PSEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|226704530|sp|B7V3E7|HSLU_PSEA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|9951345|gb|AAG08439.1|AE004918_9 heat shock protein HslU [Pseudomonas aeruginosa PAO1] gi|115588423|gb|ABJ14438.1| heat shock protein HslU [Pseudomonas aeruginosa UCBPP-PA14] gi|126170170|gb|EAZ55681.1| heat shock protein HslU [Pseudomonas aeruginosa C3719] gi|126197442|gb|EAZ61505.1| heat shock protein HslU [Pseudomonas aeruginosa 2192] gi|218774381|emb|CAW30198.1| heat shock protein HslU [Pseudomonas aeruginosa LESB58] gi|310882496|gb|EFQ41090.1| heat shock protein HslU [Pseudomonas aeruginosa 39016] Length = 447 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 239/449 (53%), Positives = 322/449 (71%), Gaps = 18/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +V+ Sbjct: 61 GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120 Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172 +A AEERILDAL+ SNTR++FRK+LR+G++ DKEIDIEVAD Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + L LFS M G+KK ++ V + + +E+ RL++ + Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVAEALKLIRDEEAVRLVNEEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DKI R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF ILT+ ++L QY+EL Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408 +KTEG+ ++F ED I LA++A +N +IGARRL T++ER+LE++SFSA+DL Sbjct: 359 LKTEGLAIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +K ++IDA YV H+G+ + D+ +IL Sbjct: 419 DKPILIDAGYVNSHLGELAEDEDLSRYIL 447 >gi|188575136|ref|YP_001912065.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519588|gb|ACD57533.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas oryzae pv. oryzae PXO99A] Length = 485 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/454 (51%), Positives = 326/454 (71%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 36 TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 95 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR Sbjct: 96 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 155 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+ ILDAL+ + AT ++TR FR+ LR+GE+ ++EI+ Sbjct: 156 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 215 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +EVA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ Sbjct: 216 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 271 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSS 283 +L++ D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+ Sbjct: 272 KLVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSN 331 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 332 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 391 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F +D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 392 ALIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 451 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 452 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 485 >gi|330951292|gb|EGH51552.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae Cit 7] Length = 445 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ +++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAINPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|66043661|ref|YP_233502.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. syringae B728a] gi|289672014|ref|ZP_06492904.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. syringae FF5] gi|302189054|ref|ZP_07265727.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. syringae 642] gi|81308607|sp|Q4ZZF8|HSLU_PSEU2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|63254368|gb|AAY35464.1| Heat shock protein HslU [Pseudomonas syringae pv. syringae B728a] gi|330899264|gb|EGH30683.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. japonica str. M301072PT] gi|330971748|gb|EGH71814.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977164|gb|EGH77122.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 445 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ +++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|319785877|ref|YP_004145352.1| heat shock protein HslVU, ATPase HslU [Pseudoxanthomonas suwonensis 11-1] gi|317464389|gb|ADV26121.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoxanthomonas suwonensis 11-1] Length = 454 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/449 (51%), Positives = 319/449 (71%), Gaps = 19/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKRAVAIALRNRWRR QL +LR+E+MPKNIL++GPTGVG Sbjct: 8 TMTPREIVQELDRHIVGQQAAKRAVAIALRNRWRRMQLDPELRNEVMPKNILMIGPTGVG 67 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + +VR Q Sbjct: 68 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKMYREQAKVKVRLQ 127 Query: 126 ASINAEERILDALVGKTATS----------------NTREVFRKKLRDGEISDKEIDIEV 169 A AEERILDAL+ + A +TR FR+ LRDGE+ D+EI++E+ Sbjct: 128 AEERAEERILDALLPRRAVPGFGNGTAEVQVSGPEDSTRAKFRRMLRDGELDDREIELEL 187 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 A T + + PG +G L ++F+ +G G+ K ++++ P L+ +E+ RL++ Sbjct: 188 AATGAGVDIMTPPGMEEMG-QQLRQMFAS-LGGGKTHKRSLAIRAARPLLVEEEAARLVN 245 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKY 288 D V +I+ E +GIVF+DE DK+ R G G VSREGVQRDLLPLVEGS+VSTKY Sbjct: 246 EDDVRAAAIEACEQHGIVFIDEIDKVAKRGENVGGGDVSREGVQRDLLPLVEGSNVSTKY 305 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF ILT+ ++ L Q Sbjct: 306 GTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALSKEDFVRILTEPKAALTRQ 365 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y EL+ TEG+ L+FT D+++ LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 366 YVELLATEGVGLEFTTDAVERLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPDRD 425 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V ID YV H+G+ + D+ +IL Sbjct: 426 GQSVTIDRAYVDQHLGELVQDPDLSRYIL 454 >gi|237756271|ref|ZP_04584829.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691572|gb|EEP60622.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 448 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/450 (51%), Positives = 328/450 (72%), Gaps = 15/450 (3%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M++ +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP DLRDE++PKNIL++G Sbjct: 1 MEIDRELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQKLPEDLRDEVIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA L APFIKVE TKFTE+GYVGR+VE IIR+LVDV+ +++ + + Sbjct: 61 PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMIKAEKME 120 Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169 EVRE+A AEE++LD LV K S RE FR+ L++G++ DK ++I+V Sbjct: 121 EVREKAKAIAEEKVLDYLVPKKTKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180 Query: 170 AD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 + S+ + +PG + L ELFS +G ++KK R++V++ + +E+++LI Sbjct: 181 EEKVSAVVGGVVVPGLEDIE-SQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLI 238 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287 DMD V +++ EN GIVF+DE DK+ AR S +G VSREGVQRDLLP+VEG+ VSTK Sbjct: 239 DMDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTK 298 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF ILT+ ++ LI Sbjct: 299 YGPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIK 358 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY LM TEG+ L+FTED+I +A +A +N +IGARRL T++E+++ED SF+A DL Sbjct: 359 QYIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILEKIMEDFSFNAPDL 418 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + +VID++ VR +G+ + D+ +IL Sbjct: 419 KGQKIVIDSKLVREKLGNVITNEDLTRYIL 448 >gi|170730012|ref|YP_001775445.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa M12] gi|238687980|sp|B0U6U9|HSLU_XYLFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|167964805|gb|ACA11815.1| heat shock protein [Xylella fastidiosa M12] Length = 459 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 11 TMTPREIVQELDRHIVGQQVAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE + VR Q Sbjct: 71 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130 Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166 AEERILDAL+ + + S TR FR+ LR GE+ D+EI+ Sbjct: 131 VEEYAEERILDALLPRRSVGIGFDVDADVIRQEPSAHDSETRAKFRRMLRSGELEDREIE 190 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS + G G+ +K +++++ P L+ +E+ Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284 +L++ D + +I+ E GIVF+DE DK+V R D+ G VSREGVQRDLLPLVEGS+V Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+EL+KTEG+ LDFTED+ID +A++A +N +IGARRL TV+ER+LE +S+ + Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA+YV H+G+ + D+ +IL Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459 >gi|225849338|ref|YP_002729502.1| ATP-dependent protease ATP-binding subunit HslU [Sulfurihydrogenibium azorense Az-Fu1] gi|225644749|gb|ACN99799.1| ATP-dependent protease HslVU, ATPase subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 448 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 235/450 (52%), Positives = 325/450 (72%), Gaps = 15/450 (3%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M++ +P++IV ELD+YI+GQ +AK+AVAIALRNRWRRQ LP DLRDE++PKNIL++G Sbjct: 1 MEVREELTPKQIVEELDKYIVGQYEAKKAVAIALRNRWRRQNLPEDLRDEVIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA L APFIKVE TKFTE+GYVGR+VE IIR+L DVA +V+ + + Sbjct: 61 PTGVGKTEIARRLAALVKAPFIKVEATKFTEVGYVGRDVESIIRELTDVAFKMVKAEKME 120 Query: 121 EVREQASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEV 169 EVRE+A AEE++LD LV K S RE FR+ L++G + D+ ++I+V Sbjct: 121 EVREKARKIAEEKVLDYLVPKRPRRYGSLTEEEEESPAREKFRQMLKEGLLDDRVVEIDV 180 Query: 170 ADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 + + I +PG + L E+FS +G R KK +++V++ + +E+++LI Sbjct: 181 TEKAQAVIGGVVVPGLEDIE-SQLKEIFSS-LGPSRSKKRKLTVKEALKVIENEEAEKLI 238 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287 DMD V +I+ VEN+GIVF+DE DK+ ++ S +G VSREGVQRDLLP+VEG+ VSTK Sbjct: 239 DMDEVQSLAIKRVENFGIVFIDEIDKVASKSSSRSGPDVSREGVQRDLLPIVEGTVVSTK 298 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF ILT+ ++ LI Sbjct: 299 YGPVRTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELKPLTKEDFVRILTEPKNALIK 358 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QYK LM TEG+ L+FT+D+I+ +A +A +N +IGARRL T++E+++ED SF+A DL Sbjct: 359 QYKALMLTEGVELEFTQDAIEEIARLAQEVNEKTENIGARRLHTILEKIMEDYSFNAPDL 418 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + V+IDA VR +GD S D+ +IL Sbjct: 419 KGQKVIIDANIVREKLGDIISNEDLSRYIL 448 >gi|157373670|ref|YP_001472270.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis HAW-EB3] gi|189043922|sp|A8FQL9|HSLU_SHESH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157316044|gb|ABV35142.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella sediminis HAW-EB3] Length = 441 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/440 (52%), Positives = 308/440 (70%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ DAKR+VAIALRNRWRR QL D R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDTHIIGQHDAKRSVAIALRNRWRRMQLDVDFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + + + +A Sbjct: 64 TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREDQMKKCKFKA 123 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K S TR++FRKKLR+G++ DKEI+I+VA I Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPDDSATRQIFRKKLREGQLDDKEIEIDVAAPQVGIE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F MG G K+ +M +++ Y ++ +E+ +L++ D + + Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGDSKRRKMPIKEAYKLMIEEEAAKLVNQDDMKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L Q+ +M TE Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELSALTADDFKRILTEPHASLTEQHVAMMGTED 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FTED I+++A A +N +IGARRL TVMER++ED+S+ ASD T VIDAE Sbjct: 362 VKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMERLMEDLSYDASDKSGNTFVIDAE 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ D + D+ FIL Sbjct: 422 YVSSHLDDLVQDEDLSRFIL 441 >gi|71905846|ref|YP_283433.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica RCB] gi|123733410|sp|Q47JL8|HSLU_DECAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|71845467|gb|AAZ44963.1| Heat shock protein HslU [Dechloromonas aromatica RCB] Length = 446 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/446 (52%), Positives = 316/446 (70%), Gaps = 16/446 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+EIVSELD++I+GQ++AK+AVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPQEIVSELDKHIVGQKNAKKAVAIALRNRWRRSQVAEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI RE +R + Sbjct: 63 KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVETIIRDLVEMAIKSHRERAMKAMRAR 122 Query: 126 ASINAEERILDALV--------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171 A AEERILD L+ A + TR+ FRKKLR+GE+ DKE+DIEVA Sbjct: 123 AEDAAEERILDVLLPTVRGPNFFAENSESTAAENTTRQKFRKKLREGELDDKEVDIEVAA 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 S F PG + + +F V G G+KK ++S+++ L +E+ +L++ D Sbjct: 183 PSLQAEIFAPPGMEEL-TQQIQGMFQSV-GGGKKKSRKLSIKEALKLLTDEEAAKLVNDD 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V +++++ VE GIVFLDE DKI +R +G VSR+GVQRDLLPLVEG++VSTKYG I Sbjct: 241 DVKQEAVKAVEQNGIVFLDELDKIASRSEMHGADVSRQGVQRDLLPLVEGTTVSTKYGMI 300 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF ILT T++ L QY+ Sbjct: 301 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTRQYQA 360 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++TEG+ L+F ED I LA++A +N +IGARRL TVME++LE++SF A + Sbjct: 361 LLETEGVQLEFVEDGIRRLAEIAFQVNEKTENIGARRLHTVMEKLLEEVSFDAGKVGLDK 420 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V+IDA YV +G+ ++ D+ ++L Sbjct: 421 VLIDAAYVNTKLGELAADEDLSRYVL 446 >gi|188997486|ref|YP_001931737.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium sp. YO3AOP1] gi|229486306|sp|B2V6B0|HSLU_SULSY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|188932553|gb|ACD67183.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurihydrogenibium sp. YO3AOP1] Length = 448 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/450 (51%), Positives = 328/450 (72%), Gaps = 15/450 (3%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M++ +P++IV EL++YI+GQ +AK+AVA+ALRNRWRRQ+LP DLRDE++PKNIL++G Sbjct: 1 MEIDKELTPKQIVEELNKYIVGQYEAKKAVAVALRNRWRRQKLPEDLRDEVIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA L APFIKVE TKFTE+GYVGR+VE IIR+LVDV+ +V+ + + Sbjct: 61 PTGVGKTEIARRLANLVKAPFIKVEATKFTEVGYVGRDVESIIRELVDVSFKMVKAEKME 120 Query: 121 EVREQASINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEV 169 EVRE+A AEE+ILD LV K S RE FR+ L++G++ DK ++I+V Sbjct: 121 EVREKAKAIAEEKILDYLVPKKPKRYGTLIEEEEESPAREKFREMLKNGQLDDKVVEIDV 180 Query: 170 AD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 + S+ + +PG + L ELFS +G ++KK R++V++ + +E+++LI Sbjct: 181 EEKVSAVVGGVVVPGLEDIE-SQLKELFSN-LGPSKRKKRRLTVKEALKIIENEEAEKLI 238 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTK 287 DMD V +++ EN GIVF+DE DK+ AR S +G VSREGVQRDLLP+VEG+ VSTK Sbjct: 239 DMDEVQTLAVKRAENLGIVFIDEIDKVAARGSSKSGPDVSREGVQRDLLPIVEGTVVSTK 298 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L K DF ILT+ ++ LI Sbjct: 299 YGPVKTDHILFIAAGAFHLAKPSDLIPELQGRFPIRVELKALTKDDFVKILTEPKNALIK 358 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY LM TEG+ L+FTED+I +A +A +N +IGARRL T++ER++ED SF+A DL Sbjct: 359 QYIALMSTEGVELEFTEDAIQEIAQIAEEVNERTENIGARRLHTILERIMEDYSFNAPDL 418 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + +VID++ VR +G+ + D+ +IL Sbjct: 419 KGQKIVIDSKLVREKLGNVITNEDLTRYIL 448 >gi|58583615|ref|YP_202631.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625420|ref|YP_452792.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75433993|sp|Q5GVM7|HSLU_XANOR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123520884|sp|Q2NYV9|HSLU_XANOM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|58428209|gb|AAW77246.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369360|dbj|BAE70518.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 455 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/454 (51%), Positives = 326/454 (71%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 6 TSTMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR Sbjct: 66 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+ ILDAL+ + AT ++TR FR+ LR+GE+ ++EI+ Sbjct: 126 NQAEERAEDCILDALLPRRATGIGFDPEAARNEPSSQENDTRIKFRRMLRNGELDEREIE 185 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +EVA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSS 283 +L++ D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+ Sbjct: 242 KLVNEDDVRTAAIKACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSN 301 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F +D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 362 ALIKQYEALLQTEGVSLTFAQDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|330961997|gb|EGH62257.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. maculicola str. ES4326] Length = 445 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 236/449 (52%), Positives = 321/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDAL-----VG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL VG +++ SNTR++FRK+LR+G++ DKEI+I++ +T Sbjct: 121 RAEDAAEERILDALLPPARVGFNEDPVQSSDSNTRQLFRKRLREGQLDDKEIEIDINETV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLQIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISQD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|329894773|ref|ZP_08270574.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma proteobacterium IMCC3088] gi|328922762|gb|EGG30095.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma proteobacterium IMCC3088] Length = 439 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/439 (52%), Positives = 317/439 (72%), Gaps = 9/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVHELDRHIVGQADAKRAVAIALRNRWRRMQLPADLRAEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLV+ +I + RE ++V+ + Sbjct: 63 KTEIARRLAKLAKAPFLKVEATKFTEVGYVGRDVESIVRDLVETSIKMYREQAVEQVQFR 122 Query: 126 ASINAEERILDALVGKTATSNT------REVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 A AEERILDAL+ T ++ R++ RKKLR+G++ DKEI+I++ + + + Sbjct: 123 AEEAAEERILDALLPPARTEDSSSSGAARQMMRKKLREGDLDDKEIEIDLRERVAGVEIM 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 PG + L +FS MG G+ KK ++++++ + L +E+ +LI+ D + + ++Q Sbjct: 183 APPGMEEM-TQQLQSMFSS-MGQGKHKKHKLTIKEAFKALSEEEAHKLINEDELKQKAVQ 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DK+ R G VSREGVQRDLLPL+EGSSVSTKYG + TDHILFI Sbjct: 241 AAEQNGIVFIDELDKVAKRGDTGGADVSREGVQRDLLPLIEGSSVSTKYGFVKTDHILFI 300 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+S+P+DL+PE+QGR P+RV L +L DF ILT+ +++L QY L+ +G+ Sbjct: 301 ASGAFHLSKPSDLIPELQGRLPIRVELAALTPDDFERILTEPKASLTEQYTALLAADGLA 360 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418 + FT D + +A+ A +N V +IGARRL TVMER+L++ SFSASD +T++IDA+Y Sbjct: 361 IQFTPDGVRRIAESAYQVNEQVENIGARRLHTVMERLLDEASFSASDHATGETLIIDADY 420 Query: 419 VRLHIGDFPSETDMYHFIL 437 V H+G + + D+ FIL Sbjct: 421 VDQHLGAYRDDQDLSKFIL 439 >gi|71897647|ref|ZP_00679892.1| Heat shock protein HslU [Xylella fastidiosa Ann-1] gi|71732550|gb|EAO34603.1| Heat shock protein HslU [Xylella fastidiosa Ann-1] Length = 459 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 236/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKR VAIALRNRWRR Q+P +LR+E+MPKNIL++GPTGVG Sbjct: 11 TMTPREIVQELDRHIVGQQAAKRLVAIALRNRWRRMQVPQELRNEVMPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE + VR Q Sbjct: 71 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130 Query: 126 ASINAEERILDALVGKTA-------------------TSNTREVFRKKLRDGEISDKEID 166 A AEERILDAL+ + + S TR FR+ LR GE+ ++EI+ Sbjct: 131 AEEYAEERILDALLPRRSLGIGFDADADAIRQEPSAHESETRAKFRRMLRSGELEEREIE 190 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS + G G+ +K +++++ P L+ +E+ Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284 +L++ D + +I+ E GIVF+DE DK+V R D+ G VSREGVQRDLLPLVEGS+V Sbjct: 247 KLVNEDEIRSAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+EL+KTEG+ LDFTED+ID +A++A +N +IGARRL TV+ER+LE +S+ + Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLETLSYES 426 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA+YV H+G+ + D+ +IL Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459 >gi|294625644|ref|ZP_06704267.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600067|gb|EFF44181.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 455 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/452 (51%), Positives = 323/452 (71%), Gaps = 24/452 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 8 TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 67 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA L APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Q Sbjct: 68 KTEIARRLATLVNAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRNQ 127 Query: 126 ASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIE 168 A AE+RILDAL+ + AT ++TR FR+ LR+GE+ ++EI++E Sbjct: 128 AEERAEDRILDALLPRRATGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELE 187 Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 VA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L Sbjct: 188 VAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKL 243 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS 285 ++ D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+VS Sbjct: 244 VNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVS 303 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ L Sbjct: 304 TKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAAL 363 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 I QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A Sbjct: 364 IKQYEALLQTEGVALTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAP 423 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA YV +G+ + D+ +IL Sbjct: 424 DRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|325925418|ref|ZP_08186817.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas perforans 91-118] gi|325544178|gb|EGD15562.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas perforans 91-118] Length = 455 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/454 (51%), Positives = 323/454 (71%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 6 TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR Sbjct: 66 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI+ Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +EVA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 +L++ D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+ Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 362 ALIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|119474655|ref|ZP_01615008.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2143] gi|119450858|gb|EAW32091.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2143] Length = 438 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/438 (52%), Positives = 313/438 (71%), Gaps = 8/438 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVHELDRHIIGQERAKRAVAIALRNRWRRMQLDEELRTEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE ++V+ + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEIEKVKFR 122 Query: 126 ASINAEERILDALVGKT------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 A AEERILD L+ K S TR++FRKKLR+GE+ DKEI+IE++ T + Sbjct: 123 AEDAAEERILDVLLPKARGDEDDKESTTRQLFRKKLREGELDDKEIEIEISATPVGVEIM 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 PG + L +FS MGSG+KK +M+V ++ +E+ +L++ D + +++ Sbjct: 183 APPGMEDM-TNQLQSMFSN-MGSGKKKTGKMTVAAALKKIQEEEAGKLVNEDELKAQAVE 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVFLDE DK+ R G G VSREGVQRDLLPL+EG +VSTK+G I TDHILFI Sbjct: 241 AAEQTGIVFLDELDKVAKRSEGAGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILFI 300 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY+ L++TEG+ Sbjct: 301 ASGAFHLAKPSDLIPELQGRLPIRVELEALSPGDFQRILTEPKASLTEQYQALLQTEGMS 360 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + FT+D I +A+ A +N +IGARRL TVMER+L++ SF A+D + ID YV Sbjct: 361 ITFTDDGIKRIAETAWEVNERTENIGARRLHTVMERLLDEASFEATDKSGTELSIDESYV 420 Query: 420 RLHIGDFPSETDMYHFIL 437 +G+ + D+ FIL Sbjct: 421 NDKLGELAKDEDLSRFIL 438 >gi|294139044|ref|YP_003555022.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea DSS12] gi|293325513|dbj|BAJ00244.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella violacea DSS12] Length = 441 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/440 (52%), Positives = 310/440 (70%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ+AKRAVAIALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQQNAKRAVAIALRNRWRRMQLDPDLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE + + +A Sbjct: 64 TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKLTREEHMKKSKVKA 123 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K S TR++FRKKLR+G++ DKEI+I+V+ + I Sbjct: 124 EEAAEERILDALLPKPKEDWDNEKPDDSGTRQIFRKKLREGQLDDKEIEIDVSAPQTGIE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F MG G K+ +M +++ Y ++ +E+ +L++ + + + Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGPGASKRRKMPIKEAYKLMIEEEAAKLVNQEDMKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVFLDE DKI R G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFLDEIDKICRRGESTGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QY LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELQALTADDFKRILTEPHASLTEQYVALMATEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FT D I+A+A A +N +IGARRL TVMER++E++S+ ASD VIDA+ Sbjct: 362 VKIEFTVDGIEAIAQAAWQVNERTENIGARRLHTVMERLMEELSYGASDKSGTESVIDAK 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV+ H+ + + D+ FIL Sbjct: 422 YVKDHLDELVQDEDLSRFIL 441 >gi|325918371|ref|ZP_08180502.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas vesicatoria ATCC 35937] gi|325535394|gb|EGD07259.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas vesicatoria ATCC 35937] Length = 447 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/451 (51%), Positives = 324/451 (71%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + A ++TR FR+ LR+GE+ ++EI++EV Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNDTRIKFRRMLRNGELDEREIELEV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVTLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|15838086|ref|NP_298774.1| ATP-dependent protease ATP-binding subunit HslU [Xylella fastidiosa 9a5c] gi|11133082|sp|Q9PD94|HSLU_XYLFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|9106512|gb|AAF84294.1|AE003978_2 heat shock protein [Xylella fastidiosa 9a5c] Length = 459 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/453 (52%), Positives = 327/453 (72%), Gaps = 25/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQQ AKR+VAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVG Sbjct: 11 TMTPREIVQELDRHIVGQQAAKRSVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI RDLVD A+ + RE + VR Q Sbjct: 71 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIGRDLVDTAVKMYREQAKVRVRTQ 130 Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166 A AEERILD L+ + + S TR FR+ LR GE+ ++EI+ Sbjct: 131 AEEYAEERILDVLLPRRSVGIGFDVDADVIRQEPSAHESETRAKFRRMLRSGELEEREIE 190 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS + G G+ +K +++++ P L+ +E+ Sbjct: 191 LDVAVNVSMDI--MTPPGMEEMG-QQLRQMFSNI-GGGKSQKRKLTIKAARPLLIEEEAA 246 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSV 284 +L++ D + +I+ E GIVF+DE DK+V R D+ G VSREGVQRDLLPLVEGS+V Sbjct: 247 KLVNEDEIRAAAIEACEQNGIVFIDEIDKVVKRGDTVGGGDVSREGVQRDLLPLVEGSNV 306 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG+I T+HILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ Sbjct: 307 STKYGTIRTNHILFIASGAFHLTKPSDLIPELQGRFPIRVELDALSKADFIRILTEPKAA 366 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+EL+KTEG+ LDFTED+ID +A++A +N +IGARRL TV+ER+LE +S+ + Sbjct: 367 LTKQYQELLKTEGVSLDFTEDAIDRIAEIAYLVNERQENIGARRLHTVLERLLEMLSYES 426 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++V +DA+YV H+G+ + D+ +IL Sbjct: 427 PDRDGESVTVDADYVNAHLGELVKDPDLSRYIL 459 >gi|289667444|ref|ZP_06488519.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 447 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/451 (51%), Positives = 323/451 (71%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI++EV Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSNGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|289664007|ref|ZP_06485588.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 447 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/451 (51%), Positives = 323/451 (71%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI++EV Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R NG VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEVGSNGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVSLTFASDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|114776988|ref|ZP_01452008.1| ATP-dependent protease ATP-binding subunit [Mariprofundus ferrooxydans PV-1] gi|114552509|gb|EAU54969.1| ATP-dependent protease ATP-binding subunit [Mariprofundus ferrooxydans PV-1] Length = 442 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/444 (53%), Positives = 312/444 (70%), Gaps = 15/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREI+SELDRYI+GQ DAKRAVAIALRNRWRRQQ+P+ +R+E+ PKNILL+GPTGVGK Sbjct: 1 MTPREIISELDRYIVGQHDAKRAVAIALRNRWRRQQVPSPMREEITPKNILLIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I IVRE V+ A Sbjct: 61 TEIARRLARLANAPFIKVEATKFTEVGYVGRDVETIVRDLVDTSIKIVREEHLTRVQIPA 120 Query: 127 SINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADTS 173 AEER+LD L+ + N +RE R KLR GE+ +++++IEV T Sbjct: 121 EKMAEERLLDILIPHSVNPNGPAVASSPAGNNDSREKMRHKLRLGELDNRQVEIEVEQTP 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 S P G ++L E+ +MG K K RMSV + + E+DRL+D D + Sbjct: 181 SMPMMQVFPNQGGDGGMDLQEMLGGMMGKQSKPK-RMSVADAMKIIQQQEADRLLDEDAI 239 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++I EN GIVFLDE DKI R G G VSREGVQRDLLPLVEG++++T+YG I T Sbjct: 240 RDEAINRAENDGIVFLDEMDKITHR-GGTGGDVSREGVQRDLLPLVEGTTINTRYGHIKT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DH+LFIASGAFH+++P+DL+PE+QGRFP+RV+L +L +S+FR IL + ES+L QY L+ Sbjct: 299 DHVLFIASGAFHLAKPSDLIPELQGRFPIRVNLNALGESEFRRILVEPESSLTRQYAALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + E + + FT++ I LA +AV +N +IGARRL T++ERVLEDISF ASD +++ Sbjct: 359 QAENVSISFTDEGIAELARIAVLVNEKTENIGARRLHTLLERVLEDISFEASDRGGESIE 418 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +DA YV +G+ ++ D+ +IL Sbjct: 419 VDAAYVLAQLGEISADEDLSRYIL 442 >gi|170719649|ref|YP_001747337.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida W619] gi|229486078|sp|B1J2T7|HSLU_PSEPW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|169757652|gb|ACA70968.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida W619] Length = 447 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/450 (51%), Positives = 315/450 (70%), Gaps = 20/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAMKMLREQEIIRVRH 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+RILDAL+ + ++ SNTR++FRK+LR+G++ DKEI+IEVAD Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 P G L LF+ MG G++K ++ V++ + +E+ RL++ D Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNDD 237 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 238 DLKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+E Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYRE 357 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408 L+KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 358 LLKTEGLNIEFKADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417 Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E + IDA YV H+G+ D+ +IL Sbjct: 418 DEAPIQIDAAYVNGHLGELAQNEDLSRYIL 447 >gi|149912218|ref|ZP_01900797.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36] gi|149804698|gb|EDM64749.1| ATP-dependent protease ATP-binding subunit [Moritella sp. PE36] Length = 443 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 311/442 (70%), Gaps = 11/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELD +IIGQQ+AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPREIVSELDHHIIGQQNAKRAVAIALRNRWRRMQLDQELRQEVSPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTEIGYVG+ V+QII+DL DVA+ + RE + + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEIGYVGKEVDQIIKDLTDVAVKLTREQEMKKYHVR 122 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A NAE+R+LDAL+ K + NTR++FRKKLR+G++ DKEI IE+A Sbjct: 123 AEENAEDRVLDALLPNPRNNWGEEEKASNDNTRQIFRKKLREGKLDDKEISIEIAAPQMG 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G K +M V++ +L+ DE+ +L++ + + Sbjct: 183 VEIMAPPGMEEM-TNQLQGMFQNLSGGSTTKSRKMKVKEALKQLVEDEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVFLDE DKI R N GVSREGVQRDLLPL+EG +V+TK+G + TDH Sbjct: 242 KAIFAVENNGIVFLDEIDKICKRSDSNDGGVSREGVQRDLLPLIEGCTVTTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS+P+DL+PE+QGR P+RV L +L +DF ILT+ ++L QY ++KT Sbjct: 302 ILFIASGAFQVSKPSDLIPELQGRLPIRVELDALTAADFVRILTEPNASLTEQYTAMLKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D ID +A+ A N+N +IGARRL TVMER++E+ISF AS+ +++V+D Sbjct: 362 EGVNVEFTPDGIDGIANAAWNVNEKTENIGARRLHTVMERLMEEISFDASEKNGQSLVVD 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +YV ++ + + D+ +IL Sbjct: 422 GDYVGKYLNELVEDEDLSRYIL 443 >gi|325928767|ref|ZP_08189936.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas perforans 91-118] gi|325540848|gb|EGD12421.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas perforans 91-118] Length = 447 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/451 (51%), Positives = 322/451 (71%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI++EV Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIELEV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|213969433|ref|ZP_03397570.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae pv. tomato T1] gi|301382644|ref|ZP_07231062.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. tomato Max13] gi|302060628|ref|ZP_07252169.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. tomato K40] gi|213925804|gb|EEB59362.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae pv. tomato T1] Length = 445 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/449 (52%), Positives = 319/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ +++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YV H+GD D+ +IL Sbjct: 417 AAPIEIDADYVNSHLGDLAENEDLSRYIL 445 >gi|302132701|ref|ZP_07258691.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 443 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/447 (52%), Positives = 318/447 (71%), Gaps = 20/447 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR +A Sbjct: 61 TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRHRA 120 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS- 174 AE+RILDAL+ +++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 EDAAEDRILDALLPPARVGFNEDPAQSSDSNTRQLFRKRLREGQLDDKEIEIEINEAVGV 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + + Sbjct: 181 DIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELK 236 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + TD Sbjct: 237 VKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTD 296 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL+K Sbjct: 297 HILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLK 356 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----EK 410 TEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 TEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPDAA 416 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YV H+GD D+ +IL Sbjct: 417 PIEIDADYVNSHLGDLAENEDLSRYIL 443 >gi|152984444|ref|YP_001351110.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas aeruginosa PA7] gi|166221594|sp|A6VDH5|HSLU_PSEA7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|150959602|gb|ABR81627.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas aeruginosa PA7] Length = 447 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 239/449 (53%), Positives = 320/449 (71%), Gaps = 18/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +V+ Sbjct: 61 GKTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEIQKVKY 120 Query: 125 QASINAEERILDALVGKTAT------------SNTREVFRKKLRDGEISDKEIDIEVADT 172 +A AEERILDAL+ SNTR++FRK+LR+G++ DKEIDIEVAD Sbjct: 121 RAEDAAEERILDALLPAARPAMGFGDEPAREDSNTRQLFRKRLREGQLDDKEIDIEVADN 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + L LFS M G+KK ++ V + +E+ RL++ + Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFSG-MSKGKKKTRKLKVADALKMIRDEEAARLVNEEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DKI R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 239 LKARALEAVEQHGIVFIDEIDKIAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ +DF ILT+ ++L QY+EL Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPNDFERILTEPHASLTEQYREL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408 +KTEG+ ++F ED I LA++A +N +IGARRL T++ER+LE++SFSA+DL Sbjct: 359 LKTEGLGIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHS 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +K + IDA YV H+G+ + D+ +IL Sbjct: 419 DKPIRIDAGYVNSHLGELAEDEDLSRYIL 447 >gi|78046249|ref|YP_362424.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585934|sp|Q3BXT9|HSLU_XANC5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|78034679|emb|CAJ22324.1| ATP-dependent HslUV protease ATP-binding subunitHslU [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 455 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/454 (51%), Positives = 323/454 (71%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 6 TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR Sbjct: 66 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI+ Sbjct: 126 NQAEERAEDRILDALLPRRAAGIGFDPEAARNEPSSQDNETRIKFRRMLRNGELDEREIE 185 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++VA + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ Sbjct: 186 LDVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAG 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 +L++ D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+ Sbjct: 242 KLVNEDDVRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 362 ALIKQYEALLQTEGVALTFAPDAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|104783982|ref|YP_610480.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas entomophila L48] gi|122401537|sp|Q1I3T9|HSLU_PSEE4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|95112969|emb|CAK17697.1| ATPase component of the HslUV protease [Pseudomonas entomophila L48] Length = 447 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/451 (51%), Positives = 319/451 (70%), Gaps = 22/451 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIVRVRH 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+RILDAL+ + + SNTR++FRK+LR+G++ DKEI+IEVA+ Sbjct: 121 RAEDAAEDRILDALLPQARVSSFSEEAQQSSGDSNTRQLFRKRLREGQLDDKEIEIEVAE 180 Query: 172 TSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + DI+ P G L LF+ MG G++K ++ V++ + +E+ RL++ Sbjct: 181 SMGVDIA---APPGMEEMTNQLQSLFAN-MGKGKRKSRKLKVKEALKMVRDEEAGRLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G Sbjct: 237 EELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGM 296 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+ Sbjct: 297 VKTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILKEPHASLTEQYR 356 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-- 408 EL+KTEG+ ++F ++ + LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 ELLKTEGLHIEFADEGLKRLAEIAFQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAST 416 Query: 409 --EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E + IDA YV H+G+ D+ +IL Sbjct: 417 HDETPIHIDAAYVNSHLGELAQNEDLSRYIL 447 >gi|28872254|ref|NP_794873.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae pv. tomato str. DC3000] gi|32129619|sp|Q87V00|HSLU_PSESM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|28855508|gb|AAO58568.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae pv. tomato str. DC3000] gi|331016040|gb|EGH96096.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 445 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/449 (52%), Positives = 318/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YV H+GD D+ +IL Sbjct: 417 AAPIEIDADYVNSHLGDLAENEDLSRYIL 445 >gi|58584980|ref|YP_198553.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419296|gb|AAW71311.1| ATP-dependent protease HslU, ATPase subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 496 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/435 (53%), Positives = 325/435 (74%), Gaps = 4/435 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P++IV ELDR+IIGQ DAKRAVAIALRNRWRR ++P LRDE++PKNIL++G TGVG Sbjct: 63 DLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNKVPLPLRDEIIPKNILMIGHTGVG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTEIGYVGR+V+ I RDLVD AI +V+E R + ++ Sbjct: 123 KTEIARRLAKLAGAPFIKVEATKFTEIGYVGRDVDSITRDLVDAAIVLVKEKARKALAKK 182 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-- 183 A AE+ I++++VG+ AT +++ +R++LR+ E D E+ I V ++ S + FDIPG Sbjct: 183 ALNLAEKIIVNSMVGENATEESKKTYRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMP 242 Query: 184 GASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G VG++N++EL K+ G+K K I + V++ L+ +ES+RL+D D + +++I +V Sbjct: 243 GRQVGVVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVS 302 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 N GIVFLDE DKI AR G V+REGVQRDLLPL+EG++VSTKYG + TD+ILFIASG Sbjct: 303 NEGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLEGTTVSTKYGYVKTDYILFIASG 361 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+S+P+DLLPE+QGR P+RV LK+L + D IL + ES+L+ QY LMKTE + L+F Sbjct: 362 AFHLSKPSDLLPELQGRLPIRVELKALTQEDLIKILKEPESSLLKQYIALMKTENVTLEF 421 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T+D I+ +A++A +N V +IGARRL T+ME++L++ISF AS+ + VID++YV+ Sbjct: 422 TDDGIETIAEIAFTVNREVENIGARRLHTIMEKLLDEISFIASEKNGEKFVIDSKYVKDK 481 Query: 423 IGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 482 LESISKQLDLSRFIL 496 >gi|90417285|ref|ZP_01225211.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2207] gi|90330870|gb|EAS46133.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2207] Length = 442 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/442 (52%), Positives = 320/442 (72%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV EL+R+IIGQ DAKR+VAIALRNRWRR QL D+R+E+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVHELNRHIIGQDDAKRSVAIALRNRWRRAQLDDDMRNEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVG++VE IIRDLV+ A+ VRE +V ++ Sbjct: 63 KTEIARRLARLANAPFVKVEATKFTEVGYVGKDVESIIRDLVETAVKQVREQEIKKVEQR 122 Query: 126 ASINAEERILDALV-------GKT-ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 A +AEERILD L+ G++ TS+TR++FRKKLR+G ++DKEI+IE++ T++ + Sbjct: 123 AMDSAEERILDVLLPPARSTDGQSEQTSSTRQIFRKKLREGALNDKEIEIELSQTAAGVE 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +FS MG G+ +++V + L +E+ +LI+ + + + Sbjct: 183 IMAPPGMEEM-TSQLQNMFSS-MGKGKTVTRKLTVAEALKNLKEEEAAKLINEEEIKAAA 240 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 + E GIVFLDE DK+ R +G VSREGVQRDLLPL+EGS+VSTKYG I TDHIL Sbjct: 241 VSTAEQNGIVFLDEIDKVCRRGEASGADVSREGVQRDLLPLIEGSTVSTKYGMIKTDHIL 300 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+++P+DL+PE+QGR P+RV L SL +DF ILT+ +++L QY ELM TEG Sbjct: 301 FIASGAFHLAKPSDLIPELQGRLPIRVELNSLKINDFERILTEPKASLTKQYCELMATEG 360 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--QEKTVVID 415 + ++FTED + +A++A ++N +IGARRL T+MER+LE+IS+ AS+L +++T ID Sbjct: 361 VQINFTEDGVRRIAEIAFDVNEGTENIGARRLHTIMERLLEEISYEASELGAKKETFSID 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +V +G+ + D+ FIL Sbjct: 421 KAFVDKQLGELAANEDLTRFIL 442 >gi|146280739|ref|YP_001170892.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas stutzeri A1501] gi|166221597|sp|A4VGE9|HSLU_PSEU5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145568944|gb|ABP78050.1| heat shock protein HslU [Pseudomonas stutzeri A1501] gi|327479007|gb|AEA82317.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas stutzeri DSM 4166] Length = 447 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/449 (52%), Positives = 327/449 (72%), Gaps = 18/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE ++R Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVHKMRH 120 Query: 125 QASINAEERILDAL------VG------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 +A AEERILDAL VG ++ SNTR++FRK+LR+G++ DKEIDIEVA++ Sbjct: 121 RAEDAAEERILDALLPPARPVGFSEEPVQSGDSNTRQLFRKRLREGQLDDKEIDIEVAES 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + L LF+ MG G+KK ++ +++ + + +E+ RL++ + Sbjct: 181 PAGVEIMAPPGMEEM-TNQLQNLFAN-MGKGKKKSRKLKIKEAFKLIRDEEAARLVNEED 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE GIVF+DE DK+ R + +G VSREGVQRDLLPL+EGS+V+TK G + Sbjct: 239 LKARALEAVEQNGIVFIDEIDKVAKRGNTSGADVSREGVQRDLLPLIEGSTVNTKLGMVK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ + L QY+EL Sbjct: 299 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHAALTEQYREL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408 +KTEG+ ++F ED I +A++A +N +IGARRL T++ER+LE++SFSA+DL Q Sbjct: 359 LKTEGLHIEFLEDGIKRIAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAADLAGKQQ 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + IDA YV H+G+ + D+ +IL Sbjct: 419 GEPIRIDAAYVNEHLGELAQDEDLSRYIL 447 >gi|26991678|ref|NP_747103.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida KT2440] gi|148550077|ref|YP_001270179.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida F1] gi|32129620|sp|Q88D27|HSLU_PSEPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221596|sp|A5WA35|HSLU_PSEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|24986777|gb|AAN70567.1|AE016699_8 heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida KT2440] gi|148514135|gb|ABQ80995.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida F1] gi|313500977|gb|ADR62343.1| HslU [Pseudomonas putida BIRD-1] Length = 447 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+RILDAL+ + ++ SNTR++FRK+LR+G++ DKEI+IEVAD Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 P G L LF+ MG G++K ++ V++ + +E+ RL++ + Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+ Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408 L+KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 358 LLKTEGLNIEFLADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417 Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E + IDA YV H+G+ D+ +IL Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447 >gi|330501484|ref|YP_004378353.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas mendocina NK-01] gi|328915770|gb|AEB56601.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas mendocina NK-01] Length = 446 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 235/448 (52%), Positives = 318/448 (70%), Gaps = 17/448 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ ++ SNTR++FRK+LR+G+++DKEIDIEVAD Sbjct: 121 RAEDAAEERILDALLPPARQGFGDEPARSEDSNTRQLFRKRLREGQLNDKEIDIEVADAP 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L LFS MG G+KK ++ V + +E+ RL++ + + Sbjct: 181 MGVEIMTPPGMEEM-TNQLQNLFSS-MGKGKKKSRKLKVADAMKLVRDEEAARLVNEEEL 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + T Sbjct: 239 KARALEAVEQHGIVFIDEIDKVAKRANAGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY L+ Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYSALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QE 409 KTEG+ ++F ED I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 359 KTEGLDIEFAEDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQNG 418 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + IDA YV H+G+ + D+ +IL Sbjct: 419 EPIRIDAAYVNGHLGELAQDEDLSRYIL 446 >gi|328954142|ref|YP_004371476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca acetoxidans DSM 11109] gi|328454466|gb|AEB10295.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/445 (51%), Positives = 315/445 (70%), Gaps = 14/445 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELD+YIIGQ DAKR+VAIALRNRWRRQQ+P LRDE+ PKNI+++GPTGVG Sbjct: 20 HLTPREIVAELDKYIIGQADAKRSVAIALRNRWRRQQIPEGLRDEIAPKNIIMIGPTGVG 79 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA +PF+K+E TKFTE+GYVGR+VE +IRDL+++A+N+V+ R++V+ + Sbjct: 80 KTEIARRLAKLAQSPFLKIEATKFTEVGYVGRDVESMIRDLMELAVNMVKAEAREQVKAK 139 Query: 126 ASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 A EER+LD L+ +T TRE R+ LR G + ++ ID+EV+ Sbjct: 140 AEEVVEERLLDILLPGASKPIAEVAEPNRTGVDPTREKMRQLLRQGRLDERFIDLEVSQR 199 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + I G +N E+F + S R K+ ++ + + LM++E+ RLIDMD Sbjct: 200 NIPIVEIFSNAGIEEMDINFKEMFGNIFPS-RTKQRKVKISEARDILMQEEAQRLIDMDR 258 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 V ++ + VE GI+FLDE DKIV RD G VSREGVQRDLLP+VEGS+V+TK+G + Sbjct: 259 VVNEARRKVEQSGIIFLDEIDKIVGRDHARGPDVSREGVQRDLLPIVEGSTVTTKHGMVR 318 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH S+PADL+PE+QGRFP+RV L+SL +F+ ILT+ ++ LI QY+ L Sbjct: 319 TDHILFIASGAFHTSKPADLIPEMQGRFPIRVELQSLGVEEFKRILTEPQNALIKQYRAL 378 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 M TEGI LDF D+I +A +A +N +IGARRL TVME++LEDISF A + Q+ T+ Sbjct: 379 MATEGIELDFDPDAIKEIAVLATQVNERTENIGARRLHTVMEKLLEDISFHAPEWQQGTI 438 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I A+YVR + D + D+ +IL Sbjct: 439 TITADYVRERLSDLVGDQDLSRYIL 463 >gi|167036040|ref|YP_001671271.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas putida GB-1] gi|189043915|sp|B0KM26|HSLU_PSEPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166862528|gb|ABZ00936.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas putida GB-1] Length = 447 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/450 (51%), Positives = 313/450 (69%), Gaps = 20/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+RILDAL+ + ++ SNTR++FRK+LR+G++ DKEI+IEVAD Sbjct: 121 RAEDAAEDRILDALLPQARVTSFSEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 P G L LF+ MG G++K ++ V++ + +E+ RL++ + Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEASRLVNEE 237 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+ Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILQEPHASLTEQYQA 357 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408 L+KTEG+ + F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 358 LLKTEGLNIAFQADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASTH 417 Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E + IDA YV H+G+ D+ +IL Sbjct: 418 DEAPIQIDAAYVNSHLGELAQNEDLSRYIL 447 >gi|257482922|ref|ZP_05636963.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624152|ref|ZP_06457106.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647387|ref|ZP_06478730.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. aesculi str. 2250] gi|298485095|ref|ZP_07003191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160347|gb|EFI01372.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322074|gb|EFW78170.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. glycinea str. B076] gi|320330825|gb|EFW86799.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. glycinea str. race 4] gi|330865705|gb|EGH00414.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330872045|gb|EGH06194.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. glycinea str. race 4] gi|330984743|gb|EGH82846.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009574|gb|EGH89630.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/449 (51%), Positives = 317/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V+ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|325272527|ref|ZP_08138899.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp. TJI-51] gi|324102337|gb|EGB99811.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas sp. TJI-51] Length = 447 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/450 (51%), Positives = 314/450 (69%), Gaps = 20/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPA+LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPAELRAEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEIIRVRH 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+RILDAL+ + ++ SNTR++FRK+LR+G++ DKEI+IEVAD Sbjct: 121 RAEDAAEDRILDALLPQARVTSFNEEAAQTSSDSNTRQLFRKRLREGQLDDKEIEIEVAD 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 P G L LF+ MG G++K ++ V++ + +E+ RL++ + Sbjct: 181 AVG--VEIAAPPGMEEMTNQLQSLFAN-MGKGKRKARKLKVKEALKMVRDEEAGRLVNEE 237 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 238 ELKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMV 297 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+ Sbjct: 298 KTDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILREPHASLTEQYQA 357 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--- 408 L+KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 358 LLKTEGLNIEFVADGIKRLAEIAYQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAH 417 Query: 409 -EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E + IDA YV H+G+ D+ +IL Sbjct: 418 DETPIQIDAAYVNSHLGELAQNEDLSRYIL 447 >gi|325922228|ref|ZP_08184014.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri ATCC 19865] gi|325547298|gb|EGD18366.1| heat shock protein HslVU, ATPase subunit HslU [Xanthomonas gardneri ATCC 19865] Length = 447 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/451 (51%), Positives = 322/451 (71%), Gaps = 24/451 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTGVGK Sbjct: 1 MTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR QA Sbjct: 61 TEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVRNQA 120 Query: 127 SINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEIDIEV 169 AE+RILDAL+ + A + TR FR+ LR+GE+ ++EI+++V Sbjct: 121 EERAEDRILDALLPRRAAGIGFDPEAARHEPSSQDNETRIKFRRMLRNGELDEREIELDV 180 Query: 170 A-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A + S DI PG +G L ++FS +GSG+ +K +++++ P L+ +E+ +L+ Sbjct: 181 AVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGSGKSQKRKLTIKAARPLLIEEEAGKLV 236 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST 286 + D V +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+VST Sbjct: 237 NEDDVRAAAIEACEQHGIVFIDEIDKVAKRGEAGSTGGDVSREGVQRDLLPLVEGSNVST 296 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ LI Sbjct: 297 KYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKAALI 356 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 357 KQYEALLQTEGVNLTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDTLSYEAPD 416 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +DA YV +G+ + D+ +IL Sbjct: 417 RDGQSVSVDAAYVDAQLGELVQDPDLSRYIL 447 >gi|332288323|ref|YP_004419175.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium anatis UMN179] gi|330431219|gb|AEC16278.1| ATP-dependent protease ATP-binding subunit HslU [Gallibacterium anatis UMN179] Length = 444 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/442 (52%), Positives = 312/442 (70%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVA+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAMKLVRQTEINKNRYRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + SNTR++FRKKLR+G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLLPPAKDQWGNVESNDSHSNTRQIFRKKLREGQLDDKEIEIDVAAGGTV 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L +F + + SG+ +K +M ++ L+ DE+ +LI+ + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLSSGQTQKRKMKIKDALKVLIEDEAAKLINPEELKL 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+++TK+G + TDH Sbjct: 243 KAIEAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGSTINTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VSRP+DL+PE+QGR P+RV L +L+ DF ILT+ ++L QYK LM+T Sbjct: 303 ILFIASGAFQVSRPSDLIPELQGRLPIRVELGALSAKDFERILTEPNASLTEQYKALMQT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TV+ER+++ ISF ASD+ + V ID Sbjct: 363 EGVTIEFTQDAIATIAEAAFRVNEKTENIGARRLHTVLERLMDKISFEASDMSGEKVTID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV+ +GD D+ FIL Sbjct: 423 EAYVKSALGDVVENEDLSRFIL 444 >gi|15605757|ref|NP_213134.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5] gi|11132844|sp|O66574|HSLU_AQUAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|2982904|gb|AAC06522.1| chaperone HslU [Aquifex aeolicus VF5] Length = 450 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/440 (49%), Positives = 324/440 (73%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ +V EL++Y++GQ++AK+AVAIALRNRWRRQ+LP +LR+E++PKNIL++GPTGVGK Sbjct: 13 LTPKRVVEELNKYVVGQEEAKKAVAIALRNRWRRQKLPENLRNEVIPKNILMIGPTGVGK 72 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA L APF+KVE TK+TEIGYVGR+VE ++R+LV+V+ +V++ + EVRE+A Sbjct: 73 TEIARRLANLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSFQMVKQEKMKEVRERA 132 Query: 127 SINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEER+LD LV TS RE R+KLR GE+ D+ ++IEV + + + Sbjct: 133 RRLAEERLLDYLVPHQFTSFGIRESRDAGKREELRQKLRKGELDDRIVEIEVKEKTVPMV 192 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 P G + E+ S ++ S R++K++ V++ L ++E+++LIDM+ V R++ Sbjct: 193 GIAGPPGLEELENQIKEMLSGLIPSKRRRKVK--VKEALQILEQEEAEKLIDMEEVAREA 250 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I EN+GI+F+DE DKI + G G GVSREGVQRDLLP++EG++V+TKYG + TDHIL Sbjct: 251 IYRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPILEGTTVNTKYGPVKTDHIL 310 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF+ IL + E+ L QY EL+KTE Sbjct: 311 FIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPENALTKQYIELLKTEN 370 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L+FT+D+I+ +A +A +N+ +IGARRL TVME++LEDISF+A ++ +T++IDA+ Sbjct: 371 VYLEFTDDAIEEIARIAEEINTKTENIGARRLHTVMEKLLEDISFNAPEMAGQTIIIDAK 430 Query: 418 YVRLHIGDFPSETDMYHFIL 437 +V+ + + + ++ +IL Sbjct: 431 FVKAKLENLVKDEELSRYIL 450 >gi|330886166|gb|EGH20067.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. mori str. 301020] Length = 445 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/449 (51%), Positives = 316/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELTRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V+ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|330964752|gb|EGH65012.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. actinidiae str. M302091] Length = 445 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/449 (51%), Positives = 318/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKVKALEGVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YV H+G+ D+ +IL Sbjct: 417 AAPIEIDADYVNSHLGELAENEDLSRYIL 445 >gi|170728751|ref|YP_001762777.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella woodyi ATCC 51908] gi|238688681|sp|B1KK51|HSLU_SHEWM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|169814098|gb|ACA88682.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella woodyi ATCC 51908] Length = 441 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/440 (52%), Positives = 310/440 (70%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ +AKR+VAIALRNRWRR QL AD R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQHNAKRSVAIALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + + + +A Sbjct: 64 TEIARRLAKLARAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKLTREEQMKKCKFRA 123 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K S TR+VFRKKLR+G++ DKEI+I+V+ I Sbjct: 124 EEAAEERILDALLPKAKEDWDNEKPDDSATRQVFRKKLREGQLDDKEIEIDVSAPQVGIE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F MG G K+ +M +++ Y ++ +E+ +L++ D + + Sbjct: 184 IMSPPGMEEM-TNQLQSMFQN-MGLGASKRRKMPIKEAYKLMVEEEAAKLVNQDDLKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFLDEIDKICKRGEASGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L +L+ DF+ ILT+ ++L Q LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALSADDFKRILTEPHASLTEQQIALMGTEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FTED I+++A A +N +IGARRL TVME++ E++S+ ASD T+VIDA+ Sbjct: 362 VKIEFTEDGIESIAQAAWQVNERTENIGARRLHTVMEKLTEELSYEASDKSGSTIVIDAK 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + + D+ FIL Sbjct: 422 YVSDHLDNLVQDEDLSRFIL 441 >gi|21232922|ref|NP_638839.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767005|ref|YP_241767.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. campestris str. 8004] gi|188990098|ref|YP_001902108.1| ATP-dependent protease ATP-binding subunit HslU [Xanthomonas campestris pv. campestris str. B100] gi|23821705|sp|Q8P552|HSLU_XANCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|81307009|sp|Q4UYX6|HSLU_XANC8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|229486307|sp|B0RNK7|HSLU_XANCB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21114758|gb|AAM42763.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572337|gb|AAY47747.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Xanthomonas campestris pv. campestris str. 8004] gi|167731858|emb|CAP50042.1| proteasome-like complex chaperone subunit [Xanthomonas campestris pv. campestris] Length = 455 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/454 (50%), Positives = 322/454 (70%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +LR+E+MPKNIL++GPTG Sbjct: 6 TATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPEELRNEVMPKNILMIGPTG 65 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D ++ + RE + VR Sbjct: 66 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTSVKLYREQAKVRVR 125 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AE+RILDAL+ + + + TR FR+ LR+GE+ ++EI+ Sbjct: 126 NQAEERAEDRILDALLPRRSAGIGFDPEAARHEPSAQDNETRIKFRRMLRNGELDEREIE 185 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +EVA + S DI PG +G L ++FS +G G+ +K +++++ P L+ +E+ Sbjct: 186 LEVAVNASMDI--MTPPGMEEMG-QQLRQMFSN-LGGGKSQKRKLTIKAARPLLIEEEAG 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 +L++ D + +I+ E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+ Sbjct: 242 KLVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGEAGSSGGDVSREGVQRDLLPLVEGSN 301 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L K+DF ILT+ ++ Sbjct: 302 VSTKYGTVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTALTKADFVRILTEPKA 361 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L++TEG+ L F D++D LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 362 ALIKQYEALLQTEGVALTFGADAVDRLAEIAAQVNERQENIGARRLHTVLERLLDVLSYE 421 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV +G+ + D+ +IL Sbjct: 422 APDRDGQSVTVDAAYVDAQLGELVQDPDLSRYIL 455 >gi|145297300|ref|YP_001140141.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas salmonicida subsp. salmonicida A449] gi|166221458|sp|A4SHM1|HSLU_AERS4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|142850072|gb|ABO88393.1| ATP-dependent protease HslVU, ATPase subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 442 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/441 (53%), Positives = 314/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL ++R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLGEEMRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VRE+ ++++ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKLVRETEMEKMKYRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ K SNTR++FRKKLR+G++ DKEI++E++ + + Sbjct: 124 EEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF +G +KKK ++ V++ L+ +E+ RL++ + + + Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VEN GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LF+ASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM TE Sbjct: 302 LFVASGAFQVARPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I LA+ A +N +IGARRL TVMER++EDISF AS+ +T VID Sbjct: 362 GVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISFDASEKSGETFVIDT 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+G + D+ FIL Sbjct: 422 DYVNAHLGKLIEDEDLSRFIL 442 >gi|254482739|ref|ZP_05095977.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma proteobacterium HTCC2148] gi|214037098|gb|EEB77767.1| heat shock protein HslVU, ATPase subunit HslU [marine gamma proteobacterium HTCC2148] Length = 440 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 12/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVSELDQHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE I+RDLVDV+I ++RE VR + Sbjct: 63 KTEIARRLAKLADAPFVKVEATKFTEVGYVGRDVESIVRDLVDVSIKMLREQEMVRVRFR 122 Query: 126 ASINAEERILDALV-------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A +AEERILD L+ G T S TR++ RKKLR+GE+ DKEI++E++ + + Sbjct: 123 AEESAEERILDILLPPARDSEGSTGES-TRQLLRKKLREGELDDKEIEVEISAPAMGMEI 181 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +FS M G++K +M V+ + L +E+ ++++ D + + ++ Sbjct: 182 MAPPGMEEM-TNQLQGMFSN-MSKGQRKNQKMPVKAAFTALCDEEAAKMVNEDELKQKAV 239 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 E GIVF+DE DK+ R G G VSREGVQRDLLPL+EGS+VSTK+G I TDHILF Sbjct: 240 DAAEQNGIVFIDELDKVAKRSEGAGADVSREGVQRDLLPLIEGSTVSTKHGMIKTDHILF 299 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DL+PE+QGR P+RV L +L DF ILT+ ++L QY+ L+ TEG+ Sbjct: 300 IASGAFHLAKPSDLIPELQGRLPIRVELNALGPDDFERILTEPNASLTEQYQALLATEGL 359 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDA 416 ++FTED + +A+ A +N +IGARRL TVMER+LE SFSA+D L + +++DA Sbjct: 360 NVEFTEDGLRGIAETAWQVNEKTENIGARRLHTVMERLLEHASFSAADTGLSDSKLIVDA 419 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + S D+ FIL Sbjct: 420 TYVSDQLEALSSNEDLSRFIL 440 >gi|332528828|ref|ZP_08404802.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella gracilis ATCC 19624] gi|332041687|gb|EGI78039.1| ATP-dependent protease ATP-binding subunit HslU [Hylemonella gracilis ATCC 19624] Length = 453 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/453 (51%), Positives = 316/453 (69%), Gaps = 23/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDRHIVGQKDAKRAVAIALRNRWRRQQVEAALRPEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL+DVA+ RE+ +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLMDVAVKQTREAAMKKVRTR 122 Query: 126 ASINAEERILDALV-----------------GKT---ATSNTREVFRKKLRDGEISDKEI 165 A AEERILDAL+ G++ A + TR++FRKKLR+G++ ++E+ Sbjct: 123 AEDAAEERILDALLPPPRDVSRESLAEDLERGRSVGMADNGTRQIFRKKLREGQLDEREV 182 Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +IEV + + P G L LF + MG+G++K +M + + L+ +E+ Sbjct: 183 EIEVNEPKPQLEIMG-PAGMEEMTEQLRGLFGQ-MGAGKRKLRKMRIVEAMKLLLDEEAA 240 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSV 284 +L++ D + ++ E GIVF+DE DK+ +R G G VSR+GVQRDLLPLVEG+SV Sbjct: 241 KLVNEDEIRVQALSNAEQNGIVFIDEIDKVTSRSEGQGTAEVSRQGVQRDLLPLVEGTSV 300 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG I TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L SL+ DF ILT T ++ Sbjct: 301 STKYGVIKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELASLSVEDFEAILTQTHAS 360 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+ L+ TEG+ L+F D I LA +A +N +IGARRL TVMER+L+D+SF A Sbjct: 361 LTRQYQALLATEGVTLEFAPDGITRLAHIAYEVNERTENIGARRLATVMERLLDDVSFDA 420 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + L +TV IDA YV + + D+ H+IL Sbjct: 421 AKLSGQTVRIDAAYVDQRLAALSKDEDLSHYIL 453 >gi|251793772|ref|YP_003008502.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter aphrophilus NJ8700] gi|247535169|gb|ACS98415.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter aphrophilus NJ8700] Length = 443 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL +R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQREIVKNRTKA 123 Query: 127 SINAEERILDALV-------GKT----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ G+T + SNTR++FRKKLR+G++ DKE++I+VA Sbjct: 124 EEAAEERILDALLPAAKNQWGETESRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M +++ L+ DE+ +L+ + + + Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFQN-LSSGQTKKRKMKIKEALKTLIDDEAAKLVTPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TVMER+++ ISF+ASD+ +TV ID Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +GD D+ FIL Sbjct: 422 AAYVSEALGDVVENEDLSRFIL 443 >gi|30250193|ref|NP_842263.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea ATCC 19718] gi|62286874|sp|Q82SP6|HSLU_NITEU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|30180988|emb|CAD86173.1| hslU; heat shock protein chaperone [Nitrosomonas europaea ATCC 19718] Length = 443 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 240/448 (53%), Positives = 319/448 (71%), Gaps = 25/448 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++IIGQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPQEIVHELDKHIIGQDTAKRAVAIALRNRWRRQQVDEPLRHEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI RE + + A Sbjct: 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREREIRKNQPLA 123 Query: 127 SINAEERILDALV----------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + SN TR+ FRKKLR+GE+ DKEI+IEVA + Sbjct: 124 EDRAEERILDALLPPARDLGFEASPSEESNATRQKFRKKLREGELDDKEIEIEVAMAQTS 183 Query: 176 ISNFDIPGGASVGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + F PG + EL S++ MGSG++K ++ +++ L +E+ RL++ Sbjct: 184 MEIFAPPG--------MEELTSQIQGMFQNMGSGKRKMRKLRIREARKLLTEEEAARLVN 235 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + ++Q VE GIVFLDE DKI +R +G VSR+GVQRDLLPLVEG+++STKYG Sbjct: 236 DEELKLGAVQNVEQNGIVFLDEIDKITSRSEVSGSDVSRQGVQRDLLPLVEGTTISTKYG 295 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF+ ILT+T++ LI QY Sbjct: 296 MIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSAEDFKQILTNTDACLIRQY 355 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+KTEGI L+F+ED+I LA++A ++N +IGARRL TVME++LEDISF+A+ Sbjct: 356 QALLKTEGIELNFSEDAIGRLAEIAFSVNERTENIGARRLHTVMEKLLEDISFNATRYGG 415 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T VIDA YV +G D+ ++L Sbjct: 416 STHVIDAVYVDERLGKLSQSEDLARYVL 443 >gi|73539874|ref|YP_294394.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha JMP134] gi|123626064|sp|Q476Y3|HSLU_RALEJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|72117287|gb|AAZ59550.1| Heat shock protein HslU [Ralstonia eutropha JMP134] Length = 443 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/447 (52%), Positives = 317/447 (70%), Gaps = 16/447 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SNTR+VFRKKLR+G++ DK+I++EVA Sbjct: 121 RTKAEEAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEVA-- 178 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + + DI P G + +F+ MG G+K + +M V++ + L+ +E+ +L++ Sbjct: 179 -AGLPSMDIMGPPGMEEMTEQIRSMFAG-MGQGKKHRRKMKVKEAFKLLIDEEAAKLVND 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + +I VE GIVFLDE DKI R G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKIANRSELGGGEVSRQGVQRDLLPLVEGTTVSTKYGM 296 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T+++L QY+ Sbjct: 297 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQ 356 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+KTE + L F D I LA++A ++N V +IGARRL TVMER+LED+SF AS + Sbjct: 357 ALLKTEEVELQFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSGE 416 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV +GD D+ ++L Sbjct: 417 TVTIDAAYVNERLGDLAVNEDLSRYVL 443 >gi|114564917|ref|YP_752431.1| ATP-dependent protease ATP-binding subunit [Shewanella frigidimarina NCIMB 400] gi|122298445|sp|Q07WM2|HSLU_SHEFN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114336210|gb|ABI73592.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella frigidimarina NCIMB 400] Length = 441 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 229/440 (52%), Positives = 307/440 (69%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ+AKR+VA+ALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQQNAKRSVAVALRNRWRRMQLEPELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE + + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRHRA 123 Query: 127 SINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K S TR+VFRKKLR+G++ DKEI+I+VA + Sbjct: 124 EEMAEERILDALLPKPKDDWDTDQKDDSTTRQVFRKKLREGQLDDKEIEIDVAAPQVGVE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L LF +G K+ ++ ++ Y +L+ DE+ +L++ + + + Sbjct: 184 IMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAYKQLVEDEAAKLVNQEDLKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE GIVFLDE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDHIL Sbjct: 242 IELVEQNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L +L +DF+ ILT+ ++L Q+ LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALTAADFKRILTEPFASLTEQHVALMNTEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FTE I+ +A+ A +N +IGARRL TVME+++E+IS+ AS+ VIDAE Sbjct: 362 VTIEFTESGIERIAEAAWQVNERTENIGARRLHTVMEKLMEEISYDASEKSGSKFVIDAE 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + D+ FIL Sbjct: 422 YVNDHLDTLVQDEDLSRFIL 441 >gi|291280524|ref|YP_003497359.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter desulfuricans SSM1] gi|290755226|dbj|BAI81603.1| ATP-dependent protease HslVU, ATPase subunit HslU [Deferribacter desulfuricans SSM1] Length = 441 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 328/441 (74%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV+ELD+YI+GQ+ AK+AVAIALRNRWRR QLP L+DE+ PKNI+++GPTGVG Sbjct: 3 NLTPKQIVAELDKYIVGQKSAKKAVAIALRNRWRRLQLPEKLQDEIAPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L +PFIKVE +KFTE+GYVGR+VE +IRDL ++AIN+V+ +++EVRE+ Sbjct: 63 KTEIARRLAKLTKSPFIKVEASKFTEVGYVGRDVESMIRDLTEIAINLVKSEKKNEVREK 122 Query: 126 ASINAEERILDALV----GKTATSN---TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A NAEERILD L+ G +T + TRE FRK LRDG++ D+ ++I+V D I Sbjct: 123 AKKNAEERILDLLLPRPSGFASTPSDDETREKFRKMLRDGKLDDRFVEIDVEDAGPQIEV 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 G +G+ NL ++F K + G+KKK ++ +++ L E+++LIDMD V +I Sbjct: 183 LTNVGMEDLGV-NLQDMF-KNLFPGKKKKKKIKIKEALEVLEMQEANKLIDMDEVKALAI 240 Query: 239 QMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 + VE GIVF+DE DK+ +RDSG+ G VSREGVQRDLLP++EGS+V TKYG + TDHI Sbjct: 241 KRVEQSGIVFIDEIDKVCSRDSGSYKGADVSREGVQRDLLPIIEGSTVMTKYGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL K DF ILT+ E+ L QYK L+ + Sbjct: 301 LFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFVRILTEPENALTKQYKALLAAD 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ +++T+D I+ +A++A +N T +IGARRL T+ME++LE+ISF A D++ K +VIDA Sbjct: 361 GVEIEYTQDGIEKIAEIATYVNKTNENIGARRLHTIMEKLLEEISFEAPDIENKQIVIDA 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV + + ++ ++L Sbjct: 421 KYVEEKLTGIIRDENLTKYVL 441 >gi|326385660|ref|ZP_08207290.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium nitrogenifigens DSM 19370] gi|326209818|gb|EGD60605.1| ATP-dependent protease ATP-binding subunit HslU [Novosphingobium nitrogenifigens DSM 19370] Length = 433 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/433 (53%), Positives = 310/433 (71%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+ IV LD +I+GQQDAKRAVA+ALRNRWRRQ L LRDE+ PKNIL++GPTG G Sbjct: 4 NLTPKAIVRALDEHIVGQQDAKRAVAVALRNRWRRQHLAPALRDEVSPKNILMIGPTGCG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDL + AI + + RR+ VRE Sbjct: 64 KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLAEEAIRLEKARRREAVREA 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 AS A +R+L ALVG A+ TRE FR ++ +G ++D E++IEV D+ S +IPG G Sbjct: 124 ASKAAMDRLLKALVGDGASEATRESFRNRILEGAMADVEVEIEVEDSPS--MPMEIPGMG 181 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 VG++NLS++ K G K+ ++ V + +L+ +E+++ +D D V R ++ E Sbjct: 182 GGVGMINLSDMMGKAFGRQPTKRRKLRVPDAWEKLVDEEAEKRMDQDDVARVALANAETN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++VSTKYG + TDH+LFIASGAF Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVSTKYGPMKTDHVLFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+D+LPE+QGR P+RV LK L++ DF IL++T +NL+ QY+ L++TE + L+FT Sbjct: 301 HVAKPSDMLPELQGRLPIRVELKGLSEDDFVRILSETRANLVEQYRALLETEKVALEFTP 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D+I A+A A +N V +IGARRLQTVME++LE++SF A D TV +D YV + Sbjct: 361 DAIRAIARTAAQVNEAVENIGARRLQTVMEKLLEEVSFDAEDRVGTTVTVDEAYVAQRLA 420 Query: 425 DFPSETDMYHFIL 437 D+ +IL Sbjct: 421 SLAGNADLSKYIL 433 >gi|110835106|ref|YP_693965.1| ATP-dependent protease ATP-binding subunit HslU [Alcanivorax borkumensis SK2] gi|123149266|sp|Q0VMA5|HSLU_ALCBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|110648217|emb|CAL17693.1| heat shock protein HslU [Alcanivorax borkumensis SK2] Length = 445 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 231/444 (52%), Positives = 318/444 (71%), Gaps = 13/444 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IVSEL+R+I+GQ AKRAVA+ALR RWRR QLP ++R E+ PKNIL++GPTGVG Sbjct: 3 SLTPKDIVSELNRHIVGQDAAKRAVALALRTRWRRMQLPEEMRAEVAPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL++VAI ++R+ V Q Sbjct: 63 KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEVAIKLLRDKEIARVGSQ 122 Query: 126 ASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 A AEERILDAL+ T ++TR++FRKKLR+GE+ DKEID++VA + I Sbjct: 123 ADDAAEERILDALLPPARTDDSSANTDNSTRQIFRKKLREGELDDKEIDVDVASNPAGID 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L ++FSK+ + ++K ++ V++ Y + +E+ R ++ D + + Sbjct: 183 IMAPPGMEEM-TSQLQQMFSKMGNNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKVQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I VEN GIVF+DE DK+ R G G VSREGVQRDLLPL+EGS+VSTKYG + TDHIL Sbjct: 242 IDAVENSGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+SRP+DL+PE+QGR P+RV L L+ DF+ ILT+ + +L QYK L++TEG Sbjct: 302 FIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLETEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVV 413 + L+ T+D I +A+VA +N +IGARRL TV+E++LE+ISF A L +K +V Sbjct: 362 LNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKPLV 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +DAE V ++G+ + D+ +IL Sbjct: 422 LDAEAVDRYLGELADDEDLSRYIL 445 >gi|221124246|ref|XP_002158924.1| PREDICTED: hypothetical protein [Hydra magnipapillata] gi|260220005|emb|CBA27110.1| ATP-dependent hsl protease ATP-binding subunit hslU [Curvibacter putative symbiont of Hydra magnipapillata] Length = 444 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 229/448 (51%), Positives = 319/448 (71%), Gaps = 22/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+ IV+ELD++I+GQ AKRAVAIALRNRWRRQ + LR E+ PKNIL++GPTGVG Sbjct: 3 TLTPQGIVAELDKHIVGQAQAKRAVAIALRNRWRRQMVEGTLRTEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+ RES + +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEIAVKQTRESEKAKVRAR 122 Query: 126 ASINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 A AE+RILD L+ +T + TR+ FRKKLR+G+++D+EI++EVA Sbjct: 123 AEDAAEDRILDILIPTPRADFGSLSAAETPENATRQAFRKKLREGQLADREIELEVA--- 179 Query: 174 SDISNFDIPGGASVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + + D+ G A G+ ++E LF + MG G+K+ ++ ++ L +E+ +L++ Sbjct: 180 APAPSLDVMGPA--GMEEMTEQIRGLFGQ-MGQGKKQTRKLRIEDAAKLLADEEAAKLVN 236 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V +IQM+E GIVF+DE DK+ +R G+G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 237 EENVKTQAIQMLEQNGIVFIDEIDKVTSRSEGSGAEVSRQGVQRDLLPLVEGTTVSTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILF+ASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T ++LI QY Sbjct: 297 MVKTDHILFVASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFEAILTQTHASLIKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L FT+D I LA +A ++N +IGARRL TVMER+L+++SF A+ L Sbjct: 357 QALLATESVQLHFTDDGITRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDATSLAG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ FIL Sbjct: 417 QTVHIDAAYVDQRLAALSQDEDLSRFIL 444 >gi|114330626|ref|YP_746848.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha C91] gi|122312892|sp|Q0AD37|HSLU_NITEC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114307640|gb|ABI58883.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosomonas eutropha C91] Length = 443 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 235/449 (52%), Positives = 318/449 (70%), Gaps = 25/449 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIV ELD++IIGQ+ AKR+VAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 HMTPQEIVHELDKHIIGQEAAKRSVAIALRNRWRRQQVGEPLRHEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLV+ AI RE + + Sbjct: 63 KTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDSIIRDLVESAIKQAREHEIRKNKPL 122 Query: 126 ASINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSS 174 A AEERILDAL+ S TR+ FRKKLR+GE+ DKEIDIE+ + + Sbjct: 123 AEDRAEERILDALLPSARDSGFDANPSEENNATRQKFRKKLREGELDDKEIDIEITMSQA 182 Query: 175 DISNFDIPGGASVGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLI 228 + F PG + EL S++ MG+ +KK ++ +++ L +E+ RLI Sbjct: 183 SMEIFAPPG--------MEELTSQIQGMFQNMGASKKKSRKLRIREARKLLTEEEAARLI 234 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + + + +++Q VE GIVFLDE DKI +R + +SR+GVQRDLLPLVEG+++STKY Sbjct: 235 NDEELKLNAVQNVEQNGIVFLDEIDKITSRSEVSSSDISRQGVQRDLLPLVEGTTISTKY 294 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF+ ILT+T++ LI Q Sbjct: 295 GMIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSADDFKQILTNTDACLIRQ 354 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L+KTEGI L+F+ED+I+ LA++A ++N +IGARRL TVME++LEDISF+A+ Sbjct: 355 YQALLKTEGIELNFSEDAIERLAEIAFSVNEITENIGARRLHTVMEKLLEDISFNATRYS 414 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T VIDA YV +G D+ ++L Sbjct: 415 GSTHVIDAAYVDERLGKLSQSEDLARYVL 443 >gi|91794710|ref|YP_564361.1| ATP-dependent protease ATP-binding subunit [Shewanella denitrificans OS217] gi|122968444|sp|Q12IT8|HSLU_SHEDO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91716712|gb|ABE56638.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella denitrificans OS217] Length = 441 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/440 (52%), Positives = 301/440 (68%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ AKRAVA+ALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D A+ + RE + + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAVKMTREQQMKKCRFRA 123 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ K S TR++FRKKLR+G++ DKEIDI++A + Sbjct: 124 EELAEERILDALLPKAKEDWDSEKKDDSGTRQIFRKKLREGQLDDKEIDIDIAAPQIGVE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L LF +G K+ ++ ++ + +L+ DE+ +L++ + + + Sbjct: 184 IMAPPGMEEM-TNQLQGLFQN-LGQSTSKRKKLKIKDAFKQLIEDEAAKLVNQEDLKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I +VE GIVFLDE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDHIL Sbjct: 242 IDLVEQNGIVFLDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L L +DF+ ILT+ ++L QY LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDPLTANDFKRILTEPNASLTEQYIALMATEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + + F E ID LA+ A +N +IGARRL TVME+++EDISF ASD VIDA+ Sbjct: 362 VTISFLESGIDKLAEAAWQVNERTENIGARRLHTVMEKLMEDISFDASDKSGSAFVIDAD 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + D+ FIL Sbjct: 422 YVTEHLDTLVQDEDLSRFIL 441 >gi|119773580|ref|YP_926320.1| ATP-dependent protease ATP-binding subunit HslU [Shewanella amazonensis SB2B] gi|166221605|sp|A1S2P4|HSLU_SHEAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|119766080|gb|ABL98650.1| heat shock protein HslVU, ATPase subunit HslU [Shewanella amazonensis SB2B] Length = 441 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/440 (52%), Positives = 306/440 (69%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQ AKR+VA+ALRNRWRR QL A LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDAHIIGQQKAKRSVAVALRNRWRRMQLDAALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDTAIKLTREVEMKKCRTRA 123 Query: 127 SINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEER+LDAL+ + S++R++FRKKLR+G++ DKEI+I++A + Sbjct: 124 EEAAEERVLDALLPRPKNDWDNNSDDNSSSRQIFRKKLREGQLDDKEIEIDIAGPQIGVE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L LF MG K+ +M +++ +L+ +E+ +L++ + + + Sbjct: 184 IMSPPGMEEM-TNQLQSLFQN-MGQAPAKRKKMKIKEALKQLVDEEAAKLVNQEDLKEKA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I++VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHIL Sbjct: 242 IELVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAF +S+P+DL+PE+QGR P+RV L +L SDF+ ILT+ ++L QY LM TEG Sbjct: 302 FIASGAFQMSKPSDLIPELQGRLPIRVELDALTASDFKRILTEPHASLTEQYVALMATEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FTE ID +A A +N +IGARRL TVMER++EDISF ASD IDA+ Sbjct: 362 VTIEFTETGIDRIAQAAWQVNERTENIGARRLHTVMERLMEDISFEASDKSGSKFTIDAD 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + + D+ FIL Sbjct: 422 YVNAHLDNLVQDEDLSRFIL 441 >gi|330877949|gb|EGH12098.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 445 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/449 (51%), Positives = 317/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIVKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKVKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTE + ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEDLKIEFKPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YV H+G+ D+ +IL Sbjct: 417 AAPIEIDADYVNSHLGELAENEDLSRYIL 445 >gi|71735439|ref|YP_272684.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. phaseolicola 1448A] gi|123734048|sp|Q48PI5|HSLU_PSE14 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|71555992|gb|AAZ35203.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas syringae pv. phaseolicola 1448A] Length = 445 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/449 (51%), Positives = 316/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLHEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IE+ + Sbjct: 121 RAEDAAEDRILDALLPPARVGFNEDPAQSNDSNTRQLFRKRLREGQLDDKEIEIEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V+ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNDEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ---- 408 +KTEG+ ++F + I LA++A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAISPD 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDAEYV H+GD D+ +IL Sbjct: 417 AAPIEIDAEYVNSHLGDLAENEDLSRYIL 445 >gi|103487080|ref|YP_616641.1| ATP-dependent protease ATP-binding subunit HslU [Sphingopyxis alaskensis RB2256] gi|98977157|gb|ABF53308.1| heat shock protein HslVU, ATPase subunit HslU [Sphingopyxis alaskensis RB2256] Length = 433 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/433 (54%), Positives = 314/433 (72%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+ IV+ LD +IIGQ AKRAVA+ALRNRWRRQQLPA+LRDE+ PKNIL++GPTG G Sbjct: 4 DLTPKAIVAALDTHIIGQDAAKRAVAVALRNRWRRQQLPAELRDEVTPKNILMIGPTGCG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + ++ RRD VR Sbjct: 64 KTEISRRLAKLADAPFIKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKDRRRDAVRAA 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 A A ER+LDAL GK A+ TR+ FR+++R+G + D E++IEVAD +F++PG Sbjct: 124 AEEAAMERLLDALTGKGASEATRQSFRQRIREGHLDDSEVEIEVADAPG--MSFELPGQP 181 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 + ++NLS++ K MG +K+ +M V L+ +E D+ +D D V R ++ E Sbjct: 182 GQMSMINLSDMLGKAMGGLPRKRRKMKVIDAATRLIEEEQDKRLDQDDVARVALADAEAN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHILFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DLLPE+QGR P+RV L +L + DF IL++T++ L QY L+ TEG+ L+F Sbjct: 301 HVAKPSDLLPELQGRLPIRVELGALTEEDFVRILSETKAGLPEQYVALLGTEGVTLNFAP 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D+I +A +A +N V +IGARRLQT+MER++E+ISF+A D T+ IDA YV + Sbjct: 361 DAIARVAKLAAEVNEKVENIGARRLQTIMERLVEEISFTAEDAPGATIDIDAAYVDRQLA 420 Query: 425 DFPSETDMYHFIL 437 D +TD+ ++L Sbjct: 421 DVVGDTDLSKYVL 433 >gi|194367243|ref|YP_002029853.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas maltophilia R551-3] gi|194350047|gb|ACF53170.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas maltophilia R551-3] Length = 457 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 233/451 (51%), Positives = 321/451 (71%), Gaps = 22/451 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL +LR+E+MPKNIL++GPTGVG Sbjct: 10 TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Q Sbjct: 70 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129 Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168 A AE+RILDAL+ + +A N TR FRK LR+GE+ D+EI+++ Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDDREIELD 189 Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 +A + S DI PG +G L +F+ + G + K ++++ P L+ +E+ +L Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLAIKAARPLLIEEEAGKL 246 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286 ++ D + +I+ E +GIVF+DE DK+ R D+ G VSREGVQRDLLPLVEGS+VST Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVST 306 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ L Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALT 366 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ + FT D+ID LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 367 KQYEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +T+VID+ YV H+G+ + D+ +IL Sbjct: 427 RDGETLVIDSAYVDTHLGELVQDPDLSRYIL 457 >gi|330807097|ref|YP_004351559.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375205|gb|AEA66555.1| ATP-dependent protease, ATP-binding subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 445 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 238/449 (53%), Positives = 318/449 (70%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEITKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ T SNTR++FRK+LR+G++ DKEI+IEVA+ + Sbjct: 121 RAEDAAEERILDALLPPARMGFSADAAATQDSNTRQLFRKRLREGQLDDKEIEIEVAEMA 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+KK ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKKKNRKLKVKEALKLVRDEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL++ ++L QY L Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPEDFERILSEPHASLTEQYCAL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408 +KTEG+ ++FT + I LA +A +N +IGARRL T++ER+LE++SFSA DL Sbjct: 357 LKTEGLNIEFTPEGIKRLAQIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHN 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E ++IDAEYV H+G+ D+ +IL Sbjct: 417 EAPILIDAEYVNSHLGELAQNEDLSRYIL 445 >gi|90580884|ref|ZP_01236686.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] gi|90437955|gb|EAS63144.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] Length = 443 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ A S+TR+ FRKKLR+G++ DKEI++++A Sbjct: 124 EELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ +M ++ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QYK LM T Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FT D ID+LAD A +N +IGARRL TVMER++E+IS+ AS+ + +ID Sbjct: 362 ESVEIEFTADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFMID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+F + D+ FIL Sbjct: 422 AAYVSERLGEFVQDEDLSRFIL 443 >gi|241765140|ref|ZP_04763128.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax delafieldii 2AN] gi|241365219|gb|EER60066.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax delafieldii 2AN] Length = 441 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/441 (51%), Positives = 307/441 (69%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELD +I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDHHIVGQSGAKRAVAIALRNRWRRQQVEGSLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+ RES ++R + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEMAVKQTRESEMKKMRSR 122 Query: 126 ASINAEERILDAL---------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L V + S R+VFRKKLR+G + DKEI+I+VA++ + Sbjct: 123 AEDAAEERILDVLIPPARAAAGVEHASDSTARQVFRKKLREGSLDDKEIEIDVAESRPQV 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L +FS+ MG +++ ++ + + L +E+ +L++ + + Sbjct: 183 ELMG-PAGMEEMTEQLRGMFSQ-MGQDKRRTRKLKIAEALKLLTDEEAGKLVNEEEIKTR 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +IQ E GIVF+DE DK+ AR +G VSR+GVQRDLLPLVEG++VSTKYG + TDHI Sbjct: 241 AIQNAEQSGIVFIDEIDKVAARQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DF IL T ++L+ QY+ L+ TE Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILMQTHASLVKQYQALLATE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ LDFT D I LA +A +N +IGARRL TVMER+L+D+SF A+ L +TV +DA Sbjct: 361 GVTLDFTPDGITRLARIAFEVNERTENIGARRLATVMERLLDDVSFDAARLSGQTVTVDA 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + + D+ +IL Sbjct: 421 AYVDARLQTLSQDEDLSRYIL 441 >gi|229586582|ref|YP_002845083.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia africae ESF-5] gi|259491378|sp|C3PN30|HSLU_RICAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|228021632|gb|ACP53340.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia africae ESF-5] Length = 450 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + +V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+ +F+IPG Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAAISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|89075184|ref|ZP_01161615.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] gi|89049006|gb|EAR54573.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] Length = 443 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ A S+TR+ FRKKLR+G++ DKEI++++A Sbjct: 124 EELAEERILDALLPPARDAWGQNEEAPAESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ +M ++ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QYK LM T Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FT D ID+LAD A +N +IGARRL TVMER++E+IS+ AS+ + +ID Sbjct: 362 ESVDIEFTTDGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKAGEKFMID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+F + D+ FIL Sbjct: 422 AAYVSERLGEFVQDEDLSRFIL 443 >gi|261866862|ref|YP_003254784.1| ATP-dependent protease ATP-binding subunit HslU [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391045|ref|ZP_06635379.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412194|gb|ACX81565.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951579|gb|EFE01698.1| heat shock protein HslVU, ATPase subunit HslU [Aggregatibacter actinomycetemcomitans D7S-1] Length = 443 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKRAVAIALRNRWRR QL +R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQSEAKRAVAIALRNRWRRMQLQEPMRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRVKA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + +NTR++FRKKLR+GE+ DKE++I+VA Sbjct: 124 EEAAEERILDALLPAAKNQWGEMENRDVQNNTRQIFRKKLREGELDDKEVEIDVAGVPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M ++ L+ DE+ +L++ + + + Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFQN-LSSGQTKKRKMKIKDALKTLVDDEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF IL + ++L QYK LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAGDFERILAEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TVMER+++ ISF+ASD+ +TV ID Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVSID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +GD D+ FIL Sbjct: 422 AAYVSEALGDVIENEDLSRFIL 443 >gi|330447101|ref|ZP_08310751.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491292|dbj|GAA05248.1| heat shock protein HslVU, ATPase subunit HslU [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 443 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 227/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQATEKVRFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S+TR+ FRKKLR+G++ DKEI++++A Sbjct: 124 EELAEERILDVLLPPARDAWGQNEASESESSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ +M ++ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KMKIKDALKAATEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIHSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L +DF+ ILT+ ++L QYK LM T Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++F+ D ID+LAD A +N +IGARRL TVMER++E+IS+ AS+ + ID Sbjct: 362 ESVEIEFSADGIDSLADAAWQVNERTENIGARRLHTVMERLMEEISYDASEKSGEKFTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+F + D+ FIL Sbjct: 422 AAYVKERLGEFVQDEDLSRFIL 443 >gi|117619601|ref|YP_858539.1| ATP-dependent protease ATP-binding subunit HslU [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166221457|sp|A0KQI8|HSLU_AERHH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|117561008|gb|ABK37956.1| heat shock protein HslVU, ATPase subunit HslU [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 442 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/441 (52%), Positives = 313/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL ++R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLDEEMRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+ ++++ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ K SNTR++FRKKLR+G++ DKEI++E+A + + Sbjct: 124 EEAAEERILDALLPNPRNSWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELAASPMGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF +G +KKK ++ V++ L+ +E+ RL++ + + + Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VEN GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LF+ASGAF +++P+DL+PE+QGR P+RV L +L DF ILT+ ++L QY+ LM TE Sbjct: 302 LFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYQALMATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I LA+ A +N +IGARRL TVMER++EDIS+ AS+ +T VID Sbjct: 362 GVKIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVIDT 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+G + D+ FIL Sbjct: 422 DYVNAHLGKLIEDEDLSRFIL 442 >gi|95928614|ref|ZP_01311361.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas acetoxidans DSM 684] gi|95135404|gb|EAT17056.1| heat shock protein HslVU, ATPase subunit HslU [Desulfuromonas acetoxidans DSM 684] Length = 442 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/441 (50%), Positives = 320/441 (72%), Gaps = 10/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+PA+LRDE+ PKNI+++G TGVG Sbjct: 3 NFTPREIVSELDRYIIGQRGAKRAVAVALRNRWRRQQVPAELRDEISPKNIIMIGATGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE ++RDLV++AI +VRE +VR + Sbjct: 63 KTEIARRLAKLAQAPFIKVEASKFTEVGYVGRDVESMVRDLVELAIIMVREQEAKKVRLK 122 Query: 126 ASINAEERILDALVG---------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEE++LD L+ ++S+TR+ R+ LR GE+ ++ +++E +++ Sbjct: 123 AEERAEEKLLDLLLPGERKNLDSEDDSSSSTRDKLRRLLRMGELDNRFVELETEESTIPA 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P GA LN+ E+F M + K+ R++V + L+ E+++L+DMD V + Sbjct: 183 MEVLTPPGAEDMGLNIKEMFGN-MFPKKTKRRRIAVSEARQILIDQEAEKLVDMDNVQQQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 + + E GI+F+DE DK+ ++D G G VSREGVQRD+LP+VEGS+V+TKYG++ TDHI Sbjct: 242 ARDLTEQSGIIFIDEIDKVASKDGGQGPEVSREGVQRDILPIVEGSTVNTKYGAVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LF+A+GAFHV++P+DL+PE+QGRFP+RV L +L + +F ILT+ +++L+ QY+ LM TE Sbjct: 302 LFVAAGAFHVAKPSDLIPELQGRFPIRVELDNLGEEEFVRILTEPKNSLVNQYQALMSTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 I L FT ++I +A A +N +IGARRL T+ME++LE++SF A ++ EKT+ ID Sbjct: 362 NITLSFTSEAIHEIARTAAQVNEQTENIGARRLHTIMEKLLEELSFDAPEMNEKTLTIDV 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 VR +GD + D+ FIL Sbjct: 422 AQVRESLGDIVGDEDLSRFIL 442 >gi|330827798|ref|YP_004390750.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565] gi|328802934|gb|AEB48133.1| ATP-dependent protease ATPase subunit HslU [Aeromonas veronii B565] Length = 442 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/441 (52%), Positives = 313/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ DAKRAVA+ALRNRWRR QL ++R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQADAKRAVAVALRNRWRRMQLNEEMRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VRE+ ++++ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKLVRETEMEKMKYRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ K SNTR++FRKKLR+G++ DKEI++E++ + + Sbjct: 124 EEAAEERILDALLPNPRNTWGEEEKADNSNTRQIFRKKLREGQLDDKEIELELSASPMGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF +G +KKK ++ V++ L+ +E+ RL++ + + + Sbjct: 184 EIMTPPGMEEMAN-QLQGLFQN-LGQNQKKKRKIKVKEAMKALIEEEAARLVNPEELKQK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VEN GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIAAVENNGIVFLDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LF+ASGAF +++P+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM TE Sbjct: 302 LFVASGAFQIAKPSDLIPELQGRLPIRVELTALTTDDFERILTEPNASLTDQYKALMATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I LA+ A +N +IGARRL TVMER++EDIS+ AS+ +T VID Sbjct: 362 GVNIEFTKDGIRRLAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKSGETFVIDT 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+G + D+ FIL Sbjct: 422 DYVNAHLGALVEDEDLSRFIL 442 >gi|121595971|ref|YP_987867.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax sp. JS42] gi|166221455|sp|A1WC16|HSLU_ACISJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120608051|gb|ABM43791.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax sp. JS42] Length = 446 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/448 (51%), Positives = 317/448 (70%), Gaps = 20/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+ RE+ +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122 Query: 126 ASINAEERILDALV-------------GKTATSNT-REVFRKKLRDGEISDKEIDIEVAD 171 A AE+RILD L+ G+ A +T R+VFRKKLR+G++ DKEI+I++AD Sbjct: 123 AEDAAEDRILDVLIPPARGAGVDTARTGEPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182 Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 F+I P G L +FS+ MG R++ ++ + + L+ +E+ +L++ Sbjct: 183 ARP---QFEIMSPAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVN 238 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++ E GIVF+DE DK+ +R G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 239 EEEVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYG 298 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF ILT T ++L+ QY Sbjct: 299 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQY 358 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L++TEG+ LDFT + I LA +A +N +IGARRL TVMER+L+++S+ A+ L Sbjct: 359 QALLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSG 418 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TVV+DA YV + + D+ +IL Sbjct: 419 QTVVVDAGYVNARLQSLSQDEDLSRYIL 446 >gi|311693356|gb|ADP96229.1| heat shock protein HslVU, ATPase subunit HslU [marine bacterium HP15] Length = 442 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/441 (51%), Positives = 315/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE+ E+A Sbjct: 64 TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREAEMKRHEERA 123 Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ +++ S+TR++FRKKLR+GE+ DKEI+I++ ++S+ + Sbjct: 124 LDAAEERILDALIPPPRDFGEDRQRSSDSSTRQLFRKKLREGELDDKEIEIDLRNSSAGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +FS + S ++K +M V +E+ +L++ + + + Sbjct: 184 EIMAPPGMEEM-TNQLQSMFSN-LSSDKRKTRKMKVSDALKRAKEEEAAKLVNEEEIKQK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +IQ VE GIVF+DE DK+ R VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI Sbjct: 242 AIQAVEQNGIVFVDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ +++L+ QY+ LM TE Sbjct: 302 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPEDFKRILTEPDASLVQQYEALMLTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L F ED+I +A+VA +N + +IGARRL TV+ER+LE +SF A D + A Sbjct: 362 GVKLTFREDAIARIAEVAWKVNESTENIGARRLHTVLERLLETLSFDAGDKVTDGFEVTA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 EYV +G+ + D+ +IL Sbjct: 422 EYVDEKLGELSEDEDLSRYIL 442 >gi|56461557|ref|YP_156838.1| ATP-dependent protease ATP-binding subunit HslU [Idiomarina loihiensis L2TR] gi|62286741|sp|Q5QV36|HSLU_IDILO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56180567|gb|AAV83289.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Idiomarina loihiensis L2TR] Length = 450 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/449 (51%), Positives = 311/449 (69%), Gaps = 20/449 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKRAVA+ALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDELRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+ RE +VR +A Sbjct: 64 TEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQTREEMMQKVRYRA 123 Query: 127 SINAEERILDALVGKTATSN------------------TREVFRKKLRDGEISDKEIDIE 168 AEERILD L+ TS+ TR+VFRKKLR+G++ DKEI+I+ Sbjct: 124 EEAAEERILDVLLPPAKTSSSGWAQQQEETPENDDQRGTRQVFRKKLREGQLDDKEIEID 183 Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 +A + PG + L +F MGS + K +M ++ Y +L+ +E+ +L+ Sbjct: 184 LAMPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGSDKTKARKMRIKDAYKQLVDEEAAKLL 241 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + D V +I+ VE GIVFLDE DKI R +G VSREGVQRDLLPLVEG++V+TK+ Sbjct: 242 NPDDVKEAAIESVEQNGIVFLDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGTTVNTKH 301 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L++L DF ILT+ ++L Q Sbjct: 302 GMIKTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELEALTSGDFVRILTEPSASLTTQ 361 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y L+ TEG+ + FTE+ I +A+VA ++N T +IGARRL TV+ER++E+ISF A+D Sbjct: 362 YHALLNTEGVEVSFTEEGIQRIAEVAFHVNETTENIGARRLHTVLERLMEEISFHATDHS 421 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +VIDA+YV H+G+ + D+ FIL Sbjct: 422 GEKLVIDADYVNEHVGELSQDEDLSRFIL 450 >gi|15603613|ref|NP_246687.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida subsp. multocida str. Pm70] gi|13431569|sp|P57968|HSLU_PASMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|12722164|gb|AAK03832.1| HslU [Pasteurella multocida subsp. multocida str. Pm70] Length = 443 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 236/442 (53%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILDAL+ G+ T++ TR+VFRKKLR+G++ DKEIDI+VA S Sbjct: 124 EEAAEDRILDALLPPAKNQWGQVETTDSNNTTRQVFRKKLREGQLDDKEIDIDVAAPSMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEDLKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEG++VSTK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT +SI +A+ A +N +IGARRL TVMER+++ ISF+ASD+Q + V ID Sbjct: 362 EGVNIEFTGESIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQGQVVRID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV +GD D+ FIL Sbjct: 422 EAYVMDALGDVVENEDLSRFIL 443 >gi|15892357|ref|NP_360071.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str. Malish 7] gi|21759186|sp|Q92II6|HSLU_RICCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|15619504|gb|AAL02972.1| heat shock protein hslU [Rickettsia conorii str. Malish 7] Length = 450 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + +V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+ +F+IPG Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|149377310|ref|ZP_01895056.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter algicola DG893] gi|149358407|gb|EDM46883.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter algicola DG893] Length = 439 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/441 (51%), Positives = 313/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+++I+GQ++AKR+VAIALRNRWRR QL + LR+E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVHELNKHIVGQEEAKRSVAIALRNRWRRMQLDSGLREEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+AI ++RE +A Sbjct: 61 TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAIKMLREKEMKRHEHRA 120 Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ KT S+TR++FRKKLR+GE+ DKEI+I++ ++ + + Sbjct: 121 MDAAEERILDALIPPPRDFKEDSQKTEDSSTRQLFRKKLREGELDDKEIEIDLRNSGAGV 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +FS M S ++K +M V + +E+ +L++ + + + Sbjct: 181 EIMAPPGMEEM-TSQLQNMFSS-MSSDKRKTRKMKVADAMKHVRDEEAAKLVNEEEIKQK 238 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +IQ VE GIVF+DE DK+ R VSREGVQRDLLPL+EGS+VSTKYGS+ TDHI Sbjct: 239 AIQTVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSVRTDHI 298 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ +S+L+ QY+ LM TE Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDSSLVQQYEALMGTE 358 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L FTED+I +A+VA +N T +IGARRL TV+ER+LE +S+ A D + + A Sbjct: 359 GVKLTFTEDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYEAGDQVTDSFEVTA 418 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +V +G+ + D+ +IL Sbjct: 419 AFVDEKLGELAEDEDLSRYIL 439 >gi|34580638|ref|ZP_00142118.1| heat shock protein hslU [Rickettsia sibirica 246] gi|28262023|gb|EAA25527.1| heat shock protein hslU [Rickettsia sibirica 246] Length = 450 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + +V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ DKEI+I VADT+ +F+IPG Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDKEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|304414794|ref|ZP_07395753.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella insecticola LSR1] gi|304283146|gb|EFL91559.1| ATP-dependent protease ATP-binding subunit [Candidatus Regiella insecticola LSR1] Length = 443 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDGHIIGQDKAKRAVAIALRNRWRRMQLPPELRCEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R +++R QA Sbjct: 64 TEIARRLAKLASAPFIKVEATKFTEVGYVGKEVDSIIRDLTDTAMKMIRHQSIEKIRAQA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 +AE+RILD LVG K ++ TR+ FRKKLR+G++ DKEI+I +A TS Sbjct: 124 EKSAEKRILDVLVGPAKESDKSEEKKKSSPTTRQTFRKKLREGKLDDKEIEINLAATSLG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + +PG + L +F + S + K ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMSLPGMEEM-TNQLQSMFQHI-ASQKNKTRKLKIKEAFRLLVEEEASKLVNPEELQQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G +SR+GVQRDLLPLVEG +VSTK+G I TD+ Sbjct: 242 QTIEAVEQHGIVFIDEIDKICKRGQTSGPDISRQGVQRDLLPLVEGCTVSTKHGMIKTDY 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGRFP+RV L++L DF ILT+ ++L Q+K LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRFPIRVELEALTTEDFERILTEPNASLTEQHKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + +DFT + I +A+ A +N +IGARRL TV+ER++ DIS+SA + + +++ ID Sbjct: 362 EDVTIDFTAEGIKRIAEAAWQVNERTENIGARRLHTVLERLIGDISYSACEQKGRSISID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 EYV +GD + D+ FIL Sbjct: 422 KEYVNEKLGDLVDDEDLSRFIL 443 >gi|94309077|ref|YP_582287.1| ATP-dependent protease ATP-binding subunit HslU [Cupriavidus metallidurans CH34] gi|93352929|gb|ABF07018.1| molecular chaperone and ATPase component of HslUV protease [Cupriavidus metallidurans CH34] Length = 439 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 318/444 (71%), Gaps = 18/444 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+ RES +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRTKA 120 Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+R+LD L+ + SNTR+VFRKKLR+GE+ +K+I++EV S+ + Sbjct: 121 EDAAEDRLLDVLLPPPRDIGFAQHEEKDSNTRQVFRKKLREGELDEKDIELEV---SAGM 177 Query: 177 SNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 N DI G G+ +++E + +G G+K + +M V+ + L+ +E+ +L++ + + Sbjct: 178 PNMDIMG--PPGMEDMTEQIRSMFAGLGQGKKARRKMKVKDAFKLLIDEEAAKLVNEEEL 235 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++V+TKYG I T Sbjct: 236 KHKAIANVEQNGIVFLDEIDKIASRSEVGGGEVSRQGVQRDLLPLVEGTTVNTKYGMIKT 295 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T+++L QY+ L+ Sbjct: 296 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQYQALL 355 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTE + L F+ D I LA++A ++N V +IGARRL TVMER+LED+SF A+ +TV Sbjct: 356 KTEEVELQFSPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSGETVT 415 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +DA YV +GD D+ ++L Sbjct: 416 VDAAYVDARLGDLAGNEDLSRYVL 439 >gi|240947864|ref|ZP_04752304.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor NM305] gi|240297826|gb|EER48262.1| ATP-dependent protease ATP-binding subunit [Actinobacillus minor NM305] Length = 440 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L + ++ S+TR++FRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNIQESDNSSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M R KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNRTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV + D D+ FIL Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440 >gi|157803951|ref|YP_001492500.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia canadensis str. McKiel] gi|166221603|sp|A8EZD2|HSLU_RICCK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157785214|gb|ABV73715.1| hypothetical protein A1E_03940 [Rickettsia canadensis str. McKiel] Length = 450 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/438 (50%), Positives = 321/438 (73%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPAQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE++D EI+I VADT+ +F+IPG Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKVLNGELNDTEIEISVADTAPIGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G+S+G+LNL ++ + +GS + K +M V++ ++ +E ++LID + + + +I + Sbjct: 193 MPGSSMGVLNLGDMIGRALGSSKTKTKKMLVKEAMAIIIPEELEKLIDQEKIIQQAITLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASAPSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGQVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+FT +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFTASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDQFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ FIL Sbjct: 433 ENQLSKIITNLDLAKFIL 450 >gi|239947566|ref|ZP_04699319.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921842|gb|EER21866.1| ATP-dependent protease HslVU, ATPase subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 450 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+ VAIALRNR RR++L +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKVVAIALRNRCRRKRLEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ +F+IPG Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPMRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVH 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS++++K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKDKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|37681200|ref|NP_935809.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus YJ016] gi|37199951|dbj|BAC95780.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio vulnificus YJ016] Length = 445 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 6 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 66 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 125 Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ G+ TSNTR++FRKKLR+G++ DKEI+I VA Sbjct: 126 EELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQMG 185 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ ++ ++ + L+ +E+ +L++ D + Sbjct: 186 VEIMAPPGMEEM-TNQLQGMFQSLAGNTSKKR-KLKIKDAFKALIEEEAAKLVNQDELKE 243 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 244 QAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 303 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ ++L QY LMKT Sbjct: 304 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMKT 363 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++ISF A++ VID Sbjct: 364 EDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVID 423 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+F + D+ FIL Sbjct: 424 AAYVQQRLGEFVEDEDLSRFIL 445 >gi|242241192|ref|YP_002989373.1| heat shock protein HslVU, ATPase HslU [Dickeya dadantii Ech703] gi|242133249|gb|ACS87551.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii Ech703] Length = 443 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLEEDLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADAAIKMVRQLAVEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD LV G+T SN R+ FRKKLR+G++ DKEI+IE+A Sbjct: 124 EELAEERILDVLVPPAKNNWGQTEESNEPSPARQAFRKKLREGQLDDKEIEIELAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + +L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIKDAFKQLVEEEAGKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ + L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSAALTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++F +D I +A+ A +N +IGARRL TV+ER++EDIS++AS++ +TV ID Sbjct: 362 EGVNIEFAQDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDISYNASEMGGQTVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443 >gi|27364751|ref|NP_760279.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio vulnificus CMCP6] gi|320155143|ref|YP_004187522.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio vulnificus MO6-24/O] gi|31340168|sp|Q8DCP4|HSLU_VIBVU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|61213544|sp|Q7MH56|HSLU_VIBVY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|27360896|gb|AAO09806.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio vulnificus CMCP6] gi|319930455|gb|ADV85319.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio vulnificus MO6-24/O] Length = 443 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ G+ TSNTR++FRKKLR+G++ DKEI+I VA Sbjct: 124 EELAEERILDALLPPPRDAWGQNEQSEDTSNTRQIFRKKLREGKLDDKEIEINVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ ++ ++ + L+ +E+ +L++ D + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQSLAGNTSKKR-KLKIKDAFKALIEEEAAKLVNQDELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYSVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ ++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPRASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++ISF A++ VID Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATEKSGTKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+F + D+ FIL Sbjct: 422 AAYVQQRLGEFVEDEDLSRFIL 443 >gi|229587959|ref|YP_002870078.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas fluorescens SBW25] gi|259491377|sp|C3K8V3|HSLU_PSEFS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|229359825|emb|CAY46675.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas fluorescens SBW25] Length = 445 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +V Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKLLREQEMTKVSH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ + SNTR++FRK+LR+G++ DKEI+IEVA+ S Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPASDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+KK ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL---QE 409 +KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA DL Q Sbjct: 357 LKTEGLGIEFQPDGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGAQN 416 Query: 410 KTVV-IDAEYVRLHIGDFPSETDMYHFIL 437 V+ IDA+YV H+G+ D+ +IL Sbjct: 417 GEVIKIDADYVNSHLGELAQNEDLSRYIL 445 >gi|157964396|ref|YP_001499220.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia massiliae MTU5] gi|167017228|sp|A8F187|HSLU_RICM5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157844172|gb|ABV84673.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia massiliae MTU5] Length = 450 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/438 (50%), Positives = 320/438 (73%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE I+RDLV++A+N + + +V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIMRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ S +F+IPG Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGSGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVC 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|222112159|ref|YP_002554423.1| ATP-dependent protease ATP-binding subunit hslu [Acidovorax ebreus TPSY] gi|254802304|sp|B9MFS2|HSLU_ACIET RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|221731603|gb|ACM34423.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax ebreus TPSY] Length = 446 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 20/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQQ+ A LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDRHIVGQNGAKRAVAIALRNRWRRQQVDASLRHEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+ RE+ +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRVR 122 Query: 126 ASINAEERILDALV-------------GKTATSNT-REVFRKKLRDGEISDKEIDIEVAD 171 A AE+RILD L+ G A +T R+VFRKKLR+G++ DKEI+I++AD Sbjct: 123 AEDAAEDRILDVLIPPARGASVDTARTGDPAGDSTARQVFRKKLREGQLDDKEIEIDLAD 182 Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 F+I P G L +FS+ MG R++ ++ + + L+ +E+ +L++ Sbjct: 183 ARP---QFEIMSPAGMEEMTEQLRGMFSQ-MGQERRRARKLKIAEAMKLLVEEEAAKLVN 238 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++ E GIVF+DE DK+ +R G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 239 EEEVKTRALANAEQNGIVFIDEIDKVASRQEAGGADVSRQGVQRDLLPLVEGTTVSTKYG 298 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF ILT T ++L+ QY Sbjct: 299 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSVQDFEAILTQTHASLVKQY 358 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L++TEG+ LDFT + I LA +A +N +IGARRL TVMER+L+++S+ A+ L Sbjct: 359 QALLETEGVTLDFTPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSYDATRLSG 418 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TVV+DA YV + + D+ +IL Sbjct: 419 QTVVVDAGYVNARLQSLSQDEDLSRYIL 446 >gi|254787489|ref|YP_003074918.1| ATP-dependent protease ATP-binding subunit HslU [Teredinibacter turnerae T7901] gi|259491380|sp|C5BRL0|HSLU_TERTT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|237683548|gb|ACR10812.1| heat shock protein HslVU, ATPase subunit HslU [Teredinibacter turnerae T7901] Length = 438 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/439 (51%), Positives = 318/439 (72%), Gaps = 10/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELD++I+GQQ AK+AVAIALRNRWRR Q+ LR+E+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVSELDKFIVGQQAAKKAVAIALRNRWRRMQVDKSLRNEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLVD +I + RE + R + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLVDGSIKLFREQEMAKCRYR 122 Query: 126 ASINAEERILDALVGKTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A AEERILDAL+ +S +TR++FRKKLR+G++ DKEI+IE+A T + Sbjct: 123 AMEAAEERILDALLPPARSSGEEQHESSTRQIFRKKLREGDLDDKEIEIEMAATPVGVEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +FS M SG+ +K +++V+K + +L +E+ +LI+ + + +I Sbjct: 183 MAPPGMEDM-TSQLQNMFSS-MSSGKTRKAKLTVKKAFKKLTDEEAAKLINEEELKAQAI 240 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 + E GIVF+DE DK+ RD+ +G VSREGVQRDLLPL+EG +VSTK+G I TDHILF Sbjct: 241 EAAEQNGIVFIDEIDKVTKRDNASGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILF 300 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+S+P+DL+PE+QGR P+RV L++L+ DF ILT+ +++L Q++ L+ TEG+ Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALSPEDFERILTEPDASLTEQHQALLATEGV 360 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L F++D I +A+ A ++N +IGARRL TV+E++LE+ SF+ +D + +V+DA + Sbjct: 361 SLAFSKDGIRRIAETAFDVNERTENIGARRLHTVLEKLLEEASFN-TDGESVEIVVDAAF 419 Query: 419 VRLHIGDFPSETDMYHFIL 437 V +G+ + D+ +IL Sbjct: 420 VDKQLGELATNEDLSRYIL 438 >gi|312958527|ref|ZP_07773047.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas fluorescens WH6] gi|311287070|gb|EFQ65631.1| ATP-dependent hsl protease ATP-binding subunit [Pseudomonas fluorescens WH6] Length = 445 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/449 (52%), Positives = 320/449 (71%), Gaps = 20/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +V Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAALKMLREQEVTKVSH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ ++ SNTR++FRK+LR+G++ DKEI+IEVA+ S Sbjct: 121 RAEDAAEERILDALLPPARMGFNEDAAPSSDSNTRQLFRKRLREGQLDDKEIEIEVAEVS 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+KK ++ V++ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTSQLQNLFAN-MGKGKKKSRKLKVKEALKLVRDEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALTPGDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----Q 408 +KTEG+ ++F D I LA++A +N +IGARRL T++ER+LE++SFSA D+ Sbjct: 357 LKTEGLGIEFQADGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDMAGAQN 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + IDA+YV H+G+ D+ +IL Sbjct: 417 GEAIKIDADYVNSHLGELAQNEDLSRYIL 445 >gi|300714743|ref|YP_003739546.1| ATP-dependent hsl protease ATP-binding protein HslU [Erwinia billingiae Eb661] gi|299060579|emb|CAX57686.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia billingiae Eb661] Length = 443 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ +AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDNAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSALKMVRSQAIEKNRYRA 123 Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + R+ FRKKLR+G+++DKEI+I++A +S Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEAEAAPSAARQSFRKKLREGQLNDKEIEIDLASSSMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G+ ++K ++ +Q+ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TNQLQSMFQN-LGNQKQKPRKLKIQEAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DK+ R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LMKT Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTHDFERILTEPSASVTVQYKALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FTED I +A A +N T +IGARRL TV+ER++EDIS+ ASDL ++ ID Sbjct: 362 EGVDIHFTEDGISKIAAAAWQVNETAENIGARRLHTVLERLMEDISYDASDLNGQSFTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443 >gi|326315560|ref|YP_004233232.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372396|gb|ADX44665.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax avenae subsp. avenae ATCC 19860] Length = 438 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/438 (52%), Positives = 309/438 (70%), Gaps = 8/438 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPGLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+ RE+ +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122 Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 A AE+RILDAL+ + A S R+VFRKKLR+G++ DKEI+I++AD + Sbjct: 123 AEDAAEDRILDALIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDLADARPQLEIM 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 P G L +FS+ MG R+K ++ + + L +E+ +L++ + V ++Q Sbjct: 183 G-PQGMEEMAEQLRGMFSQ-MGQERRKTRKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DK+ R G VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF ILT T ++L+ QY+ L+ TEG+ Sbjct: 301 ASGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F + I LA +A +N +IGARRL TVMER+L+++SF A+ L +TV IDA YV Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRIDAAYV 420 Query: 420 RLHIGDFPSETDMYHFIL 437 + D+ +IL Sbjct: 421 DGRLASLSQNEDLSRYIL 438 >gi|225850153|ref|YP_002730387.1| ATP-dependent protease ATP-binding subunit HslU [Persephonella marina EX-H1] gi|254802313|sp|C0QUM2|HSLU_PERMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|225645468|gb|ACO03654.1| ATP-dependent protease HslVU, ATPase subunit [Persephonella marina EX-H1] Length = 448 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/449 (50%), Positives = 325/449 (72%), Gaps = 13/449 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+L + +P++IV ELD+YI+GQ++AK+AVAIALRNRWRR +LP DLRDE++PKNIL++G Sbjct: 1 MQLREDLTPKQIVEELDKYIVGQKEAKKAVAIALRNRWRRHKLPEDLRDEVIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIR+L + + +V+ + + Sbjct: 61 PTGVGKTEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRELAEASFKMVKAEKME 120 Query: 121 EVREQASINAEERILDALVG------------KTATSNTREVFRKKLRDGEISDKEIDIE 168 +VRE+A AEE+ILD LV + TS RE FR+ LR+GE+ ++ ++I+ Sbjct: 121 KVREKAKEIAEEKILDYLVPMRVKRYGTLETFEEETSPAREKFRQMLRNGELDERTVEID 180 Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 V + + I G L +LFS + + RK++ +M+V++ L + E+++LI Sbjct: 181 VEEKGVSVVGGVIAPGLEDIENQLKDLFSSLAPTKRKRR-KMTVREAMRVLEQQEAEKLI 239 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 DMD V +++ EN+GIVF+DE DK+ + +G+ VSREGVQRDLLP+VEG++VSTKY Sbjct: 240 DMDEVASEAVYRAENFGIVFIDEIDKVAGKSTGSSPDVSREGVQRDLLPIVEGTTVSTKY 299 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K DF ILT ++ LI Q Sbjct: 300 GPVKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELQPLTKDDFVKILTQPKNALIKQ 359 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 YK LM TEG+ ++FT+D+I+A+A++A +N +IGARRL T++ER++ED SF A DL+ Sbjct: 360 YKALMATEGVDIEFTDDAIEAIAEIAEQVNEKTENIGARRLHTILERIMEDYSFEAPDLK 419 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ++ID + +R +GD D+ +IL Sbjct: 420 GQHIIIDEKVIRSKLGDIIQSEDLTRYIL 448 >gi|116626379|ref|YP_828535.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Solibacter usitatus Ellin6076] gi|116229541|gb|ABJ88250.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Solibacter usitatus Ellin6076] Length = 452 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/436 (50%), Positives = 323/436 (74%), Gaps = 7/436 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++++GQ +AKRAVAIALRNR RRQ+L ++ +E+MPKNIL++GPTGVGK Sbjct: 19 LTPREIVRELDKHVVGQAEAKRAVAIALRNRIRRQKLAPEMAEEVMPKNILMIGPTGVGK 78 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T ++RRLARLA +PF+KVE +KFTE+GYVGR+VE +IRDLVD++I++VRE R DEV ++A Sbjct: 79 TELARRLARLANSPFLKVEASKFTEVGYVGRDVESMIRDLVDISIDMVREERLDEVADRA 138 Query: 127 SINAEERILDALVGKTATSN-----TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 +NAEER+LD L+ ++ TRE R++LR+G++ ++ ++++V D Sbjct: 139 EVNAEERLLDLLMPPQPEASESLERTREKLRERLREGKLDERLVELDVKDRPPTFEITTN 198 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G +GI NL ++ + G +++ +M V + L+++E +LIDMD V R +++ V Sbjct: 199 AGIEEMGI-NLKDMLPNLFGQKSRRR-KMRVAEALDYLVQEEEQKLIDMDQVTRAALERV 256 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E+ GI+FLDE DKI R+SG+G VSREGVQRD+LP+VEG++V+T+YG + TDHILFIA+ Sbjct: 257 ESSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTTVNTRYGFVRTDHILFIAA 316 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVS+P+DL+PE+QGRFP+RV LKSL+ DF IL + ++ L QY L++TEGI L Sbjct: 317 GAFHVSKPSDLIPELQGRFPIRVELKSLSVEDFIRILKEPKNALAKQYVALLETEGIKLI 376 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 +D+++ +A A +N + +IGARRL T+ME++LE++SF+ DL++KTV +DA YVR Sbjct: 377 LADDALEEVAKFAAQVNESSENIGARRLHTIMEKLLEEVSFAGPDLKKKTVKVDANYVRK 436 Query: 422 HIGDFPSETDMYHFIL 437 + D + D+ +IL Sbjct: 437 QLADIVKDQDLSRYIL 452 >gi|188532279|ref|YP_001906076.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia tasmaniensis Et1/99] gi|238689696|sp|B2VES3|HSLU_ERWT9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|188027321|emb|CAO95164.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia tasmaniensis Et1/99] Length = 443 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR D R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIDRNRNRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+ T S+ R+ FRKKLR+G++ DKEI+I++A S Sbjct: 124 EEMAEERILDVLIPPAKNNWGQNETPAEPSSARQSFRKKLREGQLDDKEIEIDLAAISGG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQKQKPR-KLKIKEAMKLLVEEEAAKLVNQEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DK+ R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIDAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A A +N T +IGARRL TV+ER++E+IS+ ASDL +++ ID Sbjct: 362 EGVNITFTPDGISKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443 >gi|146305569|ref|YP_001186034.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina ymp] gi|166221595|sp|A4XPN6|HSLU_PSEMY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145573770|gb|ABP83302.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas mendocina ymp] Length = 446 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/449 (51%), Positives = 316/449 (70%), Gaps = 19/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLPADLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D A+ ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDLADAAVKMLREQEMTKVRH 120 Query: 125 QASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AEERILDAL+ ++ SNTR++FRK+LR+G++ DKEIDIEVA++ Sbjct: 121 RAEDAAEERILDALLPPARQAFGDEPVRSEDSNTRQLFRKRLREGQLDDKEIDIEVAESP 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDT 232 + PG + L LF+ + +K + +L+RDE + RL++ + Sbjct: 181 MGVEIMTPPGMEEM-TSQLQNLFAGLGKGKKKSRKLKVADAL--KLVRDEEAARLVNEEE 237 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + Sbjct: 238 LKARALEAVEQHGIVFIDEIDKVAKRGNTGGADVSREGVQRDLLPLIEGCTVNTKLGMVK 297 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+++P+DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY L Sbjct: 298 TDHILFIASGAFHLAKPSDLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAAL 357 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-- 410 +KTEG+ ++F E+ I LA++A +N +IGARRL T++ER+LE++SFSA DL + Sbjct: 358 LKTEGLNIEFAEEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQS 417 Query: 411 --TVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA YV H+G+ + D+ +IL Sbjct: 418 GEPIRIDAAYVNGHLGELAQDEDLSRYIL 446 >gi|238760315|ref|ZP_04621457.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia aldovae ATCC 35236] gi|238701443|gb|EEP94018.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia aldovae ATCC 35236] Length = 443 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR+ +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRQQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EELAEERILDVLIPPAKNNWGQADETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT + I +A+ A +N + +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVDFTREGIRKIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443 >gi|148557271|ref|YP_001264853.1| ATP-dependent protease ATP-binding subunit HslU [Sphingomonas wittichii RW1] gi|148502461|gb|ABQ70715.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas wittichii RW1] Length = 433 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 233/433 (53%), Positives = 318/433 (73%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+ IV+ LD +I+GQ DAK+AVA+ALRNRWRRQ+LP LRDE+ PKNIL++GPTG G Sbjct: 4 NLTPKAIVAALDAHIVGQADAKKAVAVALRNRWRRQRLPETLRDEVTPKNILMIGPTGCG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ A+ + +E RR V+++ Sbjct: 64 KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAVRLEKERRRAAVKDK 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 A A R+LDALVGK A+ TR FR++ D ++ DKEI+IEV D+ +IPG G Sbjct: 124 AEEAAMARLLDALVGKDASEATRMAFRQRFEDHQLDDKEIEIEVEDSGG--MPLEIPGMG 181 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 VG++NL ++ K G GR K+ +M+V+ + +L+ +E+D+ +D D V R ++Q E Sbjct: 182 GQVGMINLGDMMGKAFGQGRTKRRKMTVRAAWSKLVDEEADKRLDQDEVSRVALQDAEQN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DLLPE+QGR P+RV LK+L ++DF IL+DT ++L QY+ L+ TEG+ + FT+ Sbjct: 301 HVAKPSDLLPELQGRLPIRVELKALTEADFVRILSDTRASLTEQYRALIGTEGVEIGFTD 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D I A+A +A +N + +IGARRL TVME++LE++SF A D + + IDA YV + Sbjct: 361 DGIAAIAKIAAEVNGQIENIGARRLSTVMEKLLEEVSFDAEDRKGTALTIDAAYVDAQLR 420 Query: 425 DFPSETDMYHFIL 437 + TD+ ++L Sbjct: 421 EVARNTDLSKYVL 433 >gi|88705213|ref|ZP_01102924.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter litoralis KT71] gi|88700303|gb|EAQ97411.1| ATP-dependent hsl protease ATP-binding subunit hslU [Congregibacter litoralis KT71] Length = 442 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/445 (51%), Positives = 310/445 (69%), Gaps = 18/445 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEETLRAEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++A+ ++RE +++R + Sbjct: 63 KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMAVKMLREQAMEKMRFR 122 Query: 126 ASINAEERILDALV-------GKTATSN--TREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ G A+ TR++ RKKLR+G++ +KEID+E+ S Sbjct: 123 AEEAAEERILDILLPGARDAKGDAASQGDGTRQLLRKKLREGDLDEKEIDLEI----STP 178 Query: 177 SNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 SN +I P G L +FS M + K RM ++ + L +E+ +L++ D + Sbjct: 179 SNVEISAPPGMEEMTNQLQSMFSN-MSRSQPKSRRMPIKAAFAALCDEEAAKLVNEDEIK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + ++Q E GIVF+DE DK+ R G VSREGVQRDLLPL+EG +VSTKYG + TD Sbjct: 238 QQAVQAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+ DFR IL + ++ L QY L+ Sbjct: 298 HILFIASGAFHLSKPSDLIPELQGRLPIRVELAALSPEDFRRILVEPDAALTRQYSALLG 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTV 412 TEG+ L+FTED I+ +A++A LN + +IGARRL TVMER+LED SF A+D L + Sbjct: 358 TEGMSLEFTEDGIERIAELAWQLNESTENIGARRLHTVMERLLEDASFKAADDGLSGSVL 417 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +DA YV + D + D+ FIL Sbjct: 418 AVDAAYVDAQLSDLAMDEDLSKFIL 442 >gi|254521403|ref|ZP_05133458.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp. SKA14] gi|219718994|gb|EED37519.1| heat shock protein HslVU, ATPase subunit HslU [Stenotrophomonas sp. SKA14] Length = 457 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/451 (51%), Positives = 320/451 (70%), Gaps = 22/451 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL +LR+E+MPKNIL++GPTGVG Sbjct: 10 TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Q Sbjct: 70 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129 Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168 A AE+RILDAL+ + +A N TR FRK LR+GE+ ++EI+++ Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPDVARNEPSAQDNETRIKFRKMLRNGELDEREIELD 189 Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 +A + S DI PG +G L +F+ + G + K ++++ P L+ +E+ +L Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKL 246 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286 ++ D + +I+ E +GIVF+DE DK+ R DS G VSREGVQRDLLPLVEGS+VST Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDSVGGGDVSREGVQRDLLPLVEGSNVST 306 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K+DF ILT+ ++ L Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKNDFVRILTEPKAALT 366 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ + FT D+I+ LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 367 KQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +T+ ID+ YV H+G+ + D+ +IL Sbjct: 427 RDGETLAIDSAYVDAHLGELVQDPDLSRYIL 457 >gi|238650768|ref|YP_002916623.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii str. Rustic] gi|259491379|sp|C4K1X4|HSLU_RICPU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238624866|gb|ACR47572.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii str. Rustic] Length = 450 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + +V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ +F+IPG Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|310766031|gb|ADP10981.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia sp. Ejp617] Length = 443 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQNGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ S R+ FRKKLR+G++ DKEI+I++A S Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++++++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQQQKPR-KLTIKEAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I+ VE +GIVF+DE DK+ R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D + +A A +N T +IGARRL TV+ER++E+IS+ ASDL +++ ID Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443 >gi|224369849|ref|YP_002604013.1| ATP-dependent protease ATP-binding subunit HslU [Desulfobacterium autotrophicum HRM2] gi|259491370|sp|C0QJ36|HSLU_DESAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|223692566|gb|ACN15849.1| HslU [Desulfobacterium autotrophicum HRM2] Length = 453 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/453 (50%), Positives = 325/453 (71%), Gaps = 23/453 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P EIV ELDRYIIGQ++AK++VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG Sbjct: 3 DLKPMEIVRELDRYIIGQKNAKKSVAIALRNRWRRRQVPDDLRDEIAPKNIILIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL +PF KVE +KFTE+GYVGR+VE +IRDL+++ +N ++ +++EV+E+ Sbjct: 63 KTEIARRLARLTDSPFYKVEASKFTEVGYVGRDVESMIRDLMELTVNTLKVRQQEEVQEK 122 Query: 126 ASINAEERILDALV-------GKTATS-------------NTREVFRKKLRDGEISDKEI 165 A+ AEERILD L+ G T T +TRE RK L +G++ + + Sbjct: 123 AAAMAEERILDLLLPESGGPEGATLTEPHLEVVSSSSSKSSTREKLRKMLNNGKLDSRFV 182 Query: 166 DIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 DI+V +S I F G +GI N+ ++ ++ K++ ++ V + L +DE+ Sbjct: 183 DIDVTGKASPMIEIFSNTGMEEMGI-NMKDMLGNLLPKNTKRR-KVKVAEAMKILTQDEA 240 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 L+DM+ V D+++MVE GI+FLDE DKI + + G VS+EGVQRDLLP+VEGSSV Sbjct: 241 AHLVDMEKVTADAVEMVEQSGIIFLDEIDKIAGKGNSQGPEVSKEGVQRDLLPIVEGSSV 300 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 TKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL K +F ILT+ ++ Sbjct: 301 PTKYGTVKTDHILFIASGAFHIAKPSDLIPELQGRFPIRVELTSLGKDEFVRILTEPKNA 360 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 LILQY L++TEG+ L+FTED+ID +A +AV++N +IGARRL T+ME++LE+I F A Sbjct: 361 LILQYIALLRTEGVELEFTEDAIDKIASIAVDVNERTENIGARRLHTIMEKLLEEILFHA 420 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D++EK +V+DA++V + + + D+ +IL Sbjct: 421 PDVEEKKMVVDADFVDKQLMEIVKDEDLSRYIL 453 >gi|221065128|ref|ZP_03541233.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas testosteroni KF-1] gi|264680256|ref|YP_003280166.1| heat shock protein HslVU, ATPase HslU [Comamonas testosteroni CNB-2] gi|299533128|ref|ZP_07046513.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas testosteroni S44] gi|220710151|gb|EED65519.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas testosteroni KF-1] gi|262210772|gb|ACY34870.1| heat shock protein HslVU, ATPase subunit HslU [Comamonas testosteroni CNB-2] gi|298718905|gb|EFI59877.1| ATP-dependent protease ATP-binding subunit HslU [Comamonas testosteroni S44] Length = 439 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/441 (51%), Positives = 312/441 (70%), Gaps = 8/441 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P+EIVSELD++I+GQ AKRAV+IALRNRWRRQQ+P LR E+ PKNIL++GPT Sbjct: 1 MSSAMTPQEIVSELDKHIVGQHGAKRAVSIALRNRWRRQQVPEGLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+ RES ++ Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTRESDMKKM 120 Query: 123 REQASINAEERILDALV-----GKTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176 R +A AEERILD L+ G+ NT R+VFRKKLR+G++ DKEI+I++A+ + Sbjct: 121 RARAEDAAEERILDVLIPQARTGEVPADNTARQVFRKKLREGQLDDKEIEIDIAEQMPQV 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L +FS MG ++K ++ + + L +E+ ++++ + V Sbjct: 181 QIMG-PQGMEEMAEQLRGMFSH-MGQEKRKTRKLKIAEALKLLTDEEAAKMVNEEDVKTR 238 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I E GIVF+DE DK+ R +G VSR+GVQRDLLPLVEG+SVSTKYG + TDHI Sbjct: 239 AIANAEQNGIVFIDEIDKVATRQETSGSDVSRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 298 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF IL T ++L+ QY+ L+ TE Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILMQTHASLVKQYQALLATE 358 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L+F + I LA +A ++N + +IGARRL TVMER+L+++SF A+ L +TVVIDA Sbjct: 359 GVTLEFKPEGITRLATIAFDVNESTENIGARRLSTVMERLLDEVSFDAAKLSGQTVVIDA 418 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + + D+ FIL Sbjct: 419 AYVDQRLQVLSKDEDLSRFIL 439 >gi|88858829|ref|ZP_01133470.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata D2] gi|88819055|gb|EAR28869.1| ATPase component of the HslUV protease [Pseudoalteromonas tunicata D2] Length = 441 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/440 (50%), Positives = 311/440 (70%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLPEDLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI +VRE + +VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLADIAIKMVREQQTKKVRHRA 123 Query: 127 SINAEERILDALV---------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERIL+AL+ +T S+TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EEAAEERILEALLPSAKDTWGEAETKDSSTRQTFRKKLREGQLDDKEIEIDLAQAQMGVE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F +G+ ++ K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 IMAPPGMEDM-TNQLQSMFQN-LGNEKRTKRKLKIKDAIKLLIEEEASKLVNPEELKEQA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I VE GIVF+DE DKI R +G VSREGVQRDLLPLVEG++VSTK+G I TDHIL Sbjct: 242 IHAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVSTKHGMIKTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 F+ASGAF +S+P+DL+PE+QGR P+RV L L DF+ ILT+ ++L QY+ LM TEG Sbjct: 302 FVASGAFQMSKPSDLIPELQGRLPIRVELSPLTAHDFKRILTEPNASLTEQYQALMGTEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++F E++I+ +A+ A +N +IGARRL TVME+++E+IS+ AS+ +VIDA Sbjct: 362 VKVEFNEEAIEKIAEAAWRVNEKTENIGARRLHTVMEKLMEEISYDASEKSGDHIVIDAA 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 +V ++G + D+ FIL Sbjct: 422 FVTKYLGTLVEDEDLSRFIL 441 >gi|121533768|ref|ZP_01665595.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus carboxydivorans Nor1] gi|121307759|gb|EAX48674.1| heat shock protein HslVU, ATPase subunit HslU [Thermosinus carboxydivorans Nor1] Length = 462 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/463 (47%), Positives = 318/463 (68%), Gaps = 31/463 (6%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P++IV++L++YI+GQ +AK++VA+ALRNRWR +QLPA+L++E++PKNIL++GPTGV Sbjct: 1 MELTPKQIVAQLNKYIVGQHEAKKSVAVALRNRWRSKQLPAELKEEIIPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTEIGYVGR+VE ++RDLV+ AI +V++ + EV + Sbjct: 61 GKTEIARRLAKLVNAPFVKVEATKFTEIGYVGRDVESMVRDLVETAIRMVKQEKMLEVND 120 Query: 125 QASINAEERILDAL---VGKTATSNT---------------------------REVFRKK 154 +A A+ERI+D V K N RE +RK+ Sbjct: 121 RARELADERIIDYFYPTVKKEPPRNPFEILFTGGISQQKEQQPVSETTGHDVGREWWRKR 180 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 L+ GE+ D+ I+I V D S + G +N+ ++ ++ +KK+ +++V Sbjct: 181 LKQGELEDELIEITVEDNSHPMVGMFAGAGIEEMGINIQDMLGSLLPKKQKKR-KVTVAN 239 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 ++E+ +LIDMD V ++I ENYGI+FLDE DKI R G VSREGVQRD Sbjct: 240 ARKIFTQEEAQKLIDMDEVIAEAIYQAENYGIIFLDEIDKIAGRGHSTGPDVSREGVQRD 299 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF Sbjct: 300 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELTSLSKEDF 359 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 R ILT+ + LI QY L+ TEGI ++FTED+ID LA++A +N+ +IGARRL T++E Sbjct: 360 RQILTEPANALIKQYTGLLATEGIKIEFTEDAIDELAEIACKVNAQTENIGARRLHTILE 419 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED++F A DL EK +VID +YV+ +G + D+ H+IL Sbjct: 420 KLLEDLAFEAPDLTEKHIVIDRQYVQSKLGHIIVDQDLSHYIL 462 >gi|188590938|ref|YP_001795538.1| ATP-dependent protease ATP-binding subunit hslu [Cupriavidus taiwanensis LMG 19424] gi|238692923|sp|B2AGB7|HSLU_CUPTR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|170937832|emb|CAP62816.1| ATPase component of the HslUV protease, molecular chaperone [Cupriavidus taiwanensis LMG 19424] Length = 443 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/448 (51%), Positives = 319/448 (71%), Gaps = 18/448 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SNTR+VFRKKLR+G++ DK+I++EV Sbjct: 121 RTKAEDAAEDRLLDVLLPPPRDIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELEV--- 177 Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229 S+ + + DI G G+ +++E + +G G+K + +M V++ + L+ +E+ +L++ Sbjct: 178 SAGMPSMDIMGPP--GMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVN 235 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++V+TKYG Sbjct: 236 DEELKHKAIANVEQNGIVFLDEIDKIASRSDIGGGEVSRQGVQRDLLPLVEGTTVNTKYG 295 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T+++L QY Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQY 355 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L F D I LA++A ++N V +IGARRL TVMER+LED+SF AS Sbjct: 356 QALLNTEEVNLVFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSG 415 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV +GD D+ ++L Sbjct: 416 ETVTIDAAYVEERLGDLAGNEDLSRYVL 443 >gi|92112732|ref|YP_572660.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter salexigens DSM 3043] gi|123387605|sp|Q1QZZ7|HSLU_CHRSD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91795822|gb|ABE57961.1| heat shock protein HslVU, ATPase subunit HslU [Chromohalobacter salexigens DSM 3043] Length = 441 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 232/444 (52%), Positives = 315/444 (70%), Gaps = 17/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV LD+YIIGQQ+AKR+VAIALRNRWRR QL LR E++PKNIL++GPTGVG Sbjct: 3 QMTPREIVHALDQYIIGQQEAKRSVAIALRNRWRRMQLDDSLRGEVVPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +VRE ++EV + Sbjct: 63 KTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEMAMKMVREQAKEEVAHK 122 Query: 126 ASINAEERILDALVGKTA---------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A EERILDAL+ + S+TR+ FRKKLR+G++ DKEIDIE+ Sbjct: 123 AEDATEERILDALLPRPRGSEYDHARDESSTRQTFRKKLREGQLDDKEIDIEITPQG--- 179 Query: 177 SNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 FDI P G L +FS MG + + R++V++ L +E+ +L++ + + Sbjct: 180 GGFDISAPPGMEEMTSQLQSMFSN-MGKQKSETRRVTVEEARRLLHDEEAAKLVNEEQIK 238 Query: 235 RDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I+ VE GIVFLDE DK+ R DSG+G VSREGVQRDLLPL+EGS+VSTK+G + T Sbjct: 239 HRAIEAVEQNGIVFLDEIDKVAKRGDSGSGGDVSREGVQRDLLPLIEGSTVSTKHGMVKT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ + L QY+ L+ Sbjct: 299 DHILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPSAALTKQYQALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 T+G+ ++FT++ I +A++A +N +IGARRL TVMER+LE+ SF D+ + Sbjct: 359 ATDGLEVNFTDEGIARIAEIAWQVNDGTENIGARRLHTVMERLLEEPSFQGGDMA-SPLT 417 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV +G+ ++ D+ +IL Sbjct: 418 IDAAYVDEQLGELATDEDLSRYIL 441 >gi|292486619|ref|YP_003529489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia amylovora CFBP1430] gi|292897854|ref|YP_003537223.1| ATP-dependent Hsl protease ATP-binding subunit [Erwinia amylovora ATCC 49946] gi|291197702|emb|CBJ44797.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Erwinia amylovora ATCC 49946] gi|291552036|emb|CBA19073.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia amylovora CFBP1430] gi|312170682|emb|CBX78945.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia amylovora ATCC BAA-2158] Length = 443 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD LV S R+ FRKKLR+G++ DKEI+I++A S Sbjct: 124 EEMAEERVLDVLVPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAMSGG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQKQKPR-KLKIKEAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I+ VE +GIVF+DE DK+ R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D + +A A +N T +IGARRL TV+ER++E+IS+ ASDL +++ ID Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443 >gi|296105371|ref|YP_003615517.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059830|gb|ADF64568.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 443 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R + +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF ++ P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTED I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +T+ ID Sbjct: 362 EGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQTITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVGKHLDALVADEDLSRFIL 443 >gi|258590896|emb|CBE67191.1| ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein [NC10 bacterium 'Dutch sediment'] Length = 451 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/450 (49%), Positives = 319/450 (70%), Gaps = 19/450 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV+ELD+YIIGQ++AKRAVAIALRNRWRRQ+LPA+LRDE+ PKNI+++GPTGVG Sbjct: 3 QLTPRQIVAELDKYIIGQKEAKRAVAIALRNRWRRQKLPAELRDEVAPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE +K+TE+GYVGR+VE ++RDL ++A+++V+ R V+E+ Sbjct: 63 KTEIARRLAKLVDAPFIKVEASKYTEVGYVGRDVESMVRDLTELAVDMVKAERIKGVQER 122 Query: 126 ASINAEERILDALV------------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LD L+ T+ + TRE RK+L +G++ D+ +++ Sbjct: 123 ARELAEERLLDLLLPVSRMPTTPGVEQTLDASTVTSAAETREKLRKRLHEGKLDDRTVEL 182 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 EV D + + G +N+ E+ ++ R K+ ++ +++ L ++E+D+L Sbjct: 183 EVKDRAMPMVEIFSGAGMEGMDINMKEMLGSLLPQ-RTKRRKVKIREAQRILAQEEADKL 241 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 ID+D V ++++ VE+ GIVFLDE DKI RDSG+G VSR+GVQRDLLP+VEG +V+TK Sbjct: 242 IDVDEVRSEAVRRVEDSGIVFLDEIDKIAGRDSGHGPDVSRQGVQRDLLPIVEGCTVNTK 301 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF ILT+ ++ LI Sbjct: 302 YGLVRTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELASLTQDDFVRILTEPQNALIK 361 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY L++TE + LDFTED+I LA A +N +IGARRL T++ER+L++ISF A + Sbjct: 362 QYTALLETEEVTLDFTEDAIQELAATACAVNQATENIGARRLYTILERLLDEISFEAPAM 421 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 Q V I+A YVR + + D+ +IL Sbjct: 422 QGAQVTINAAYVRERLQEIVKSEDLSRYIL 451 >gi|269103958|ref|ZP_06156655.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium damselae subsp. damselae CIP 102761] gi|268163856|gb|EEZ42352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Photobacterium damselae subsp. damselae CIP 102761] Length = 443 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ AKRAVAIALRNRWRR QLP LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEALRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVRYRA 123 Query: 127 SINAEERILDALV-------GKTATSNT----REVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ G+ S+T R+ FRKKLR+G++ DKEI++++A Sbjct: 124 EELAEDRILDVLLPPVRDAWGQNENSDTNSATRQSFRKKLREGQLDDKEIELDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ ++ ++ + +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGNTTKKR-KLKIKDALKAVTEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIHAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ ++L QY+ LM T Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPNASLTEQYRALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTE+ IDALAD A +N +IGARRL TVMER++ED+S+ A++ ++ I Sbjct: 362 ESVNIEFTEEGIDALADAAWQVNERTENIGARRLHTVMERLMEDLSYDATEKSGESFKIT 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV+ +G+F + D+ FIL Sbjct: 422 AEYVKERLGEFVEDEDLSRFIL 443 >gi|241664961|ref|YP_002983321.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia pickettii 12D] gi|240866988|gb|ACS64649.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii 12D] Length = 443 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/447 (51%), Positives = 315/447 (70%), Gaps = 16/447 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+ RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+RILD L+ + S R+ FRKKLR+G++ DKEI++EV Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEV--- 177 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S+ + + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ Sbjct: 178 SAGVPSMDIMGPPGMEDMTDQIRSMFAG-LGQGKKNRRKMKVSEAFKLLIDEEAAKLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 D + + ++ VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++V+TKYG Sbjct: 237 DELKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYGM 296 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DFR ILT T+++L QY+ Sbjct: 297 IKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVDDFRAILTQTDASLTKQYQ 356 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+KTEG+ L F ED I LA++A ++N V +IGARRL TVMER+LED+SF A + Sbjct: 357 ALLKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGE 416 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV + + D+ ++L Sbjct: 417 TVTIDAAYVDERLNELSGNEDLSRYVL 443 >gi|163782102|ref|ZP_02177101.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159882634|gb|EDP76139.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 449 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/445 (49%), Positives = 323/445 (72%), Gaps = 11/445 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 +L +P+ V EL+++++GQ++AK+AVAIALRNRWRRQ+LP +RDE+ PKNIL++GP Sbjct: 7 ELLEELTPKRTVEELNKFVVGQEEAKKAVAIALRNRWRRQKLPEYIRDEVAPKNILMIGP 66 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA L APF+KVE TK+TE+GYVGR+VE ++R+L +V+ +V+ + + Sbjct: 67 TGVGKTEIARRLAGLIKAPFVKVEATKYTEVGYVGRDVESMVRELAEVSYQMVKREKVER 126 Query: 122 VREQASINAEERILDALVGKTATS---------NTREVFRKKLRDGEISDKEIDIEVADT 172 VRE+A AEERILD LV + TS RE R+KLR GE+ +K I+I+V + Sbjct: 127 VRERARKLAEERILDYLVPQQFTSFGIRESQDAGKREELREKLRRGELDEKVIEIDVQEK 186 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + P G L E+FS +M S +++K+R V++ L ++E+++LIDM+ Sbjct: 187 AVPMVGIAGPPGFEELENQLREMFSNLMPSKKRRKLR--VKEALHVLEQEEAEKLIDMEE 244 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 V R+++ EN+GI+F+DE DKI + G G GVSREGVQRDLLP++EG++V+TKYG++ Sbjct: 245 VAREAVFRAENFGIIFIDEIDKIAVKTPGTGPGVSREGVQRDLLPILEGTTVNTKYGAVK 304 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK L K DF ILT+ E+ L QY EL Sbjct: 305 TDHILFIGAGAFHMAKPSDLIPELQGRFPIRVELKPLTKEDFVKILTEPENALTKQYIEL 364 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +KTEG+ ++FTED+I+ +A ++ + N+ +IGARRL TVMER+LEDISF+A D+ + + Sbjct: 365 LKTEGVEIEFTEDAIEEIARISEDANNRTENIGARRLHTVMERLLEDISFNAPDMSGQHI 424 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +ID+++VR + + ++ +IL Sbjct: 425 IIDSKFVRAKLEGIVKDEELSRYIL 449 >gi|94967243|ref|YP_589291.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Koribacter versatilis Ellin345] gi|94549293|gb|ABF39217.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Koribacter versatilis Ellin345] Length = 472 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 225/457 (49%), Positives = 328/457 (71%), Gaps = 29/457 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ELD+Y++GQ +AKRAVAIALRNR RRQ+L DL +E++PKNI+++GPTGVGK Sbjct: 19 LTPREIVAELDKYVVGQHEAKRAVAIALRNRMRRQRLTPDLAEEIIPKNIIMIGPTGVGK 78 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA +PF+KVE +KFTE+GYVGR+VE +IRDLV++AI+++RE + D+V ++A Sbjct: 79 TEIARRLAKLANSPFLKVEASKFTEVGYVGRDVESMIRDLVEIAIDMIREEKLDDVADKA 138 Query: 127 SINAEERILDA------------------------LVGKTATSNTREVFRKKLRDGEISD 162 +NAEER+LD L G S TRE R++LR+G++ + Sbjct: 139 EMNAEERLLDLLLPSSPQPAAAHEAGAGFTQGQLELPGDGGGSRTREKLRQQLREGKLDE 198 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 + ++++V + + F+I V + N+ ++ + GS R KK +M V + + L+ Sbjct: 199 RTVELDVRE--KNFPAFEIISNQGVEEMDINMKDMLPNIFGS-RTKKRKMKVNEAFDYLI 255 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 ++E RLIDM+ V R +++ VE GI+FLDE DKI R+ G+G VSREGVQRD+LP+VE Sbjct: 256 QEEEQRLIDMEQVQRVAVERVEQSGIIFLDEIDKIAGREGGHGPDVSREGVQRDILPIVE 315 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++ +T+YG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF ILT+ Sbjct: 316 GTTCNTRYGMVRTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLSVADFIKILTE 375 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 +S+L+ QY L++TEG+ L+FT D++D +A+ A +N +IGARRL T+ME+VL++I Sbjct: 376 PKSSLVKQYTALLETEGVKLEFTRDALDEVANFAAIVNEGTENIGARRLHTIMEKVLDEI 435 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SFSA DL+ K V +DAEYVR + D+ +IL Sbjct: 436 SFSAPDLENKNVTVDAEYVRNALVHIVKNQDLSRYIL 472 >gi|77920006|ref|YP_357821.1| ATP-dependent protease ATP-binding subunit HslU [Pelobacter carbinolicus DSM 2380] gi|123573597|sp|Q3A1V6|HSLU_PELCD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|77546089|gb|ABA89651.1| heat shock protein HslVU ATPase subunit HslU [Pelobacter carbinolicus DSM 2380] Length = 445 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 225/444 (50%), Positives = 317/444 (71%), Gaps = 13/444 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 NF+PREIVSELDRYIIGQ+ AKRAVA+ALRNRWRRQQ+ +LRDE+ PKNI+++GPTGVG Sbjct: 3 NFTPREIVSELDRYIIGQKQAKRAVAVALRNRWRRQQVADELRDEIAPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE +KFTE+GYVGR+VE ++RDL+D+AI ++RE +VR + Sbjct: 63 KTEIARRLARLAQAPFIKVEASKFTEVGYVGRDVESMVRDLLDLAIIMIREEEARKVRVK 122 Query: 126 ASINAEERILDALV-----------GKTA-TSNTREVFRKKLRDGEISDKEIDIEVADTS 173 A AEER+LD L+ G+ A TR+ RK LR G + ++++++EV Sbjct: 123 AEDLAEERLLDLLLPGAQSRDPDLSGEEAGEGGTRDKLRKLLRKGALDERKVELEVQAAQ 182 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + P G +N E+F + K++ ++ V + L+ E++RL+DM+ V Sbjct: 183 MPMMEVFTPQGTEEMGINFKEMFGNLFPKKTKRR-QIKVSEAREILIEQEAERLVDMEKV 241 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + + + VE GI+F+DE DKI ++ G VSREGVQRD+LP+VEGS+VSTKYG + T Sbjct: 242 NTLARERVEQSGIIFIDEIDKIAGQNGRQGPDVSREGVQRDILPIVEGSTVSTKYGPVKT 301 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILF+A+GAFHV++P+DL+PE+QGRFP+RV L SL + +F ILT+ ++ LI QY+ LM Sbjct: 302 DHILFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLGEEEFFRILTEPKNALIRQYEALM 361 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +TEGI L FTE++I +A +A +NS +IGARRL T+ME++LE++SF A + +E++V Sbjct: 362 ETEGIRLHFTEEAIREIARIATQVNSQTENIGARRLHTIMEKLLEELSFEAPEHREQSVE 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 ID +YVR + D + D+ +IL Sbjct: 422 IDVDYVRKQLSDIARDEDLSRYIL 445 >gi|67458908|ref|YP_246532.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis URRWXCal2] gi|75536651|sp|Q4UM53|HSLU_RICFE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|67004441|gb|AAY61367.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia felis URRWXCal2] Length = 450 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTKKTLAKMEVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +G++ D EI+I VADT+ +F+IPG Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKILNGKLDDTEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++L+ QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLVKQYSALIGTEDVH 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|82703661|ref|YP_413227.1| ATP-dependent protease ATP-binding subunit [Nitrosospira multiformis ATCC 25196] gi|123768130|sp|Q2Y5Y6|HSLU_NITMU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|82411726|gb|ABB75835.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosospira multiformis ATCC 25196] Length = 443 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD++IIGQ AKR+VAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 QLTPREIVHELDKHIIGQDAAKRSVAIALRNRWRRQQVQDPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ A+ RE ++R + Sbjct: 63 KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEAAVKQSRERETQKMRAR 122 Query: 126 ASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A +AEERILD L+ A S TR+ FRKKLR+GE++DKEI+IE+A + Sbjct: 123 AEDHAEERILDVLLPVARETGLQMDSIEAESATRQKFRKKLREGELNDKEIEIELATPHT 182 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + F PG + + +F +G+ RK+ ++ +++ L+ +E+ +L++ + + Sbjct: 183 HMEIFAPPGMEEL-TTQIQGMFQN-LGAERKRMRKLKIREAMKLLIDEEASKLVNDEELK 240 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 ++Q VE GIVFLDE DKI +R +G VSR+GVQRDLLPLVEG+++STKYG I TD Sbjct: 241 LRAVQNVEQNGIVFLDEIDKITSRSETSGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 300 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF ILT+T++ L QY+ L++ Sbjct: 301 HILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLSAGDFVQILTNTDACLKRQYEALLE 360 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ L+FT D++ LA++A +N +IGARRL T ME++LED+SF A VVI Sbjct: 361 TEGVRLEFTPDAVKRLAEIAFAVNEKTENIGARRLYTAMEKLLEDVSFDAEKHHGDAVVI 420 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA YV +GD D+ ++L Sbjct: 421 DAAYVDKRLGDLAQSEDLARYVL 443 >gi|288817501|ref|YP_003431848.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter thermophilus TK-6] gi|288786900|dbj|BAI68647.1| ATP-dependent protease HslVU ATPase subunit [Hydrogenobacter thermophilus TK-6] gi|308751108|gb|ADO44591.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobacter thermophilus TK-6] Length = 450 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/443 (48%), Positives = 320/443 (72%), Gaps = 10/443 (2%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P+ IV ELD+YI+GQ+ AK+AVAIALRNRWRRQ+LP +R+E+ PKNIL++GPT Sbjct: 10 LLEELTPKRIVEELDKYIVGQEQAKKAVAIALRNRWRRQKLPQHIREEVAPKNILMIGPT 69 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L APFIKVE TK+TEIGYVGR+VE ++R+LV+V+ +V++ + +V Sbjct: 70 GVGKTEIARRLAQLIKAPFIKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKIQKV 129 Query: 123 REQASINAEERILDALVGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +E+A AEERILD LV + + + RE+ R+KLR GE+ +K I+I++ + Sbjct: 130 KERAKRAAEERILDYLVPQQLSFGVREQQDTGKRELMREKLRSGELDEKVIEIDLQEKMM 189 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + P G + + +M + +++K++ V++ L ++E+++LIDM+ V Sbjct: 190 PMIGIAGPPGLEELEEQIKSMLGNMMPTRKRRKVK--VKEALSLLEQEEAEKLIDMEEVS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 RD+IQ EN+GI+F+DE DKI + G G GVSREGVQRDLLP+VEG++V TKYG + TD Sbjct: 248 RDAIQRAENFGIIFIDEIDKIAVKTPGAGPGVSREGVQRDLLPIVEGTTVKTKYGPVRTD 307 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIA+GAFH+++P+DL+PE+QGRFP+RV L L K DF IL + ++ L QY EL+K Sbjct: 308 HILFIAAGAFHMAKPSDLIPELQGRFPIRVELSPLTKEDFVRILKEPKNALTKQYIELLK 367 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D+I+ +A +A N+ +IGARRL TVME++LEDISF+A +++ + ++I Sbjct: 368 TEGVEIEFTDDAIEEIARIAEEANTKTENIGARRLHTVMEKLLEDISFNAPEMEGQHIII 427 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D ++VR + + + ++ +IL Sbjct: 428 DTKFVRAKLENIVRDVELSRYIL 450 >gi|188025489|ref|ZP_02958840.2| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827] gi|188023372|gb|EDU61412.1| hypothetical protein PROSTU_00602 [Providencia stuartii ATCC 25827] Length = 459 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 19 MTPREIVSELDNYIIGQNKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVGK 78 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ ++ R +A Sbjct: 79 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAVKMVRQQSIEKNRYRA 138 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+IEVA Sbjct: 139 EELAEERILDVLIPPAKNNWGQSEPVDEQSPARQSFRKKLREGQLDDKEIEIEVAAAPMG 198 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M +++ + L+ +E+ +L++ + + Sbjct: 199 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKEAFKLLVEEEAAKLVNPEELKE 256 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE +GIVF+DEFDKI R +G VSREGVQRDLLPL+EG +VSTK+G + TD Sbjct: 257 QAIEAVEQHGIVFIDEFDKICKRGGQTSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTD 316 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM Sbjct: 317 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPSASLTEQYKALMA 376 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N + +IGARRL TV+ER++EDIS+ AS+ +T+ I Sbjct: 377 TEGVTIEFTDDGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASERNGQTIQI 436 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYVR H+ + ++ D+ FIL Sbjct: 437 DAEYVRQHLDELVADEDLSRFIL 459 >gi|259906819|ref|YP_002647175.1| ATP-dependent protease ATP-binding subunit HslU [Erwinia pyrifoliae Ep1/96] gi|224962441|emb|CAX53896.1| ATP-dependent hsl protease ATP-binding subunit HslU [Erwinia pyrifoliae Ep1/96] gi|283476606|emb|CAY72434.1| ATP-dependent hsl protease ATP-binding subunit hslU [Erwinia pyrifoliae DSM 12163] Length = 443 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNRYRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ S R+ FRKKLR+G++ DKEI+I++A S Sbjct: 124 EEMAEERVLDVLIPPAKNNWGQNEAAAEPSAARQAFRKKLREGQLDDKEIEIDLAAISGG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQNIGGQQQKPR-KLKIKEAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I+ VE +GIVF+DE DK+ R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIEAVEQHGIVFIDEIDKVCKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTNDFERILTEPSASITVQYKALMNT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D + +A A +N T +IGARRL TV+ER++E+IS+ ASDL +++ ID Sbjct: 362 EGVDINFTADGVSKIAAAAWQVNETAENIGARRLHTVLERLMEEISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVSKHLDELVADEDLSRFIL 443 >gi|187930771|ref|YP_001901258.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia pickettii 12J] gi|309780233|ref|ZP_07674984.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp. 5_7_47FAA] gi|238691781|sp|B2U7X3|HSLU_RALPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|187727661|gb|ACD28826.1| heat shock protein HslVU, ATPase subunit HslU [Ralstonia pickettii 12J] gi|308920936|gb|EFP66582.1| ATP-dependent protease HslVU, ATPase subunit [Ralstonia sp. 5_7_47FAA] Length = 443 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 18/448 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+ RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+RILD L+ + S R+ FRKKLR+G++ DKEI++EV Sbjct: 121 RAKAEDAAEDRILDVLIPPPRDIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELEV--- 177 Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229 S+ + DI G G+ +++E + +G G+K + +M V + + L+ +E+ +L++ Sbjct: 178 SAGAPSMDIMGPP--GMEDMTEQIRSMFAGLGQGKKNRRKMKVSEAFKLLIDEEAAKLVN 235 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 D + + ++ VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++V+TKYG Sbjct: 236 EDELKQKAVANVEQNGIVFLDEIDKIASRSEYGGGEVSRQGVQRDLLPLVEGTTVNTKYG 295 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DFR ILT T+++L QY Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFRAILTQTDASLTKQY 355 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+KTEG+ L F ED I LA++A ++N V +IGARRL TVMER+LED+SF A Sbjct: 356 QALLKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 415 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ ++L Sbjct: 416 ETVTIDAAYVDERLSELSGNEDLSRYVL 443 >gi|290477229|ref|YP_003470146.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Xenorhabdus bovienii SS-2004] gi|289176579|emb|CBJ83388.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Xenorhabdus bovienii SS-2004] Length = 443 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/442 (52%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T T S R+ FRKKLR+G++ DKEI+I+VA Sbjct: 124 EELAEERILDVLLPPAKNNWGQTETQSEPSTARQAFRKKLREGQLDDKEIEIDVASAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKTR-KMKIKDAFKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT D I LA+ A +N T +IGARRL TV+ER++EDISF AS+ Q +V I+ Sbjct: 362 EGMNIDFTTDGIRKLAEAAWRVNETTENIGARRLYTVLERMMEDISFDASERQGHSVEIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV+ H+ + ++ D+ FIL Sbjct: 422 ADYVKEHLDELVADEDLSRFIL 443 >gi|37528578|ref|NP_931923.1| ATP-dependent protease ATP-binding subunit [Photorhabdus luminescens subsp. laumondii TTO1] gi|62286848|sp|Q7MYC1|HSLU_PHOLL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|36788016|emb|CAE17135.1| ATP-dependent Hsl protease ATP-binding subunit HslU (heat shock protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 443 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDKAKRAVAIALRNRWRRMQLDETLRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T T S R+ FRKKLR+G++ DKEI+I+VA T Sbjct: 124 EELAEERILDVLIPPAKNNWGQTETQVEPSAARQAFRKKLREGQLDDKEIEIDVATTPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G K + ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKHKSR-KLKIKDAFKLLIEEEASKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM+T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTKDFERILTEPSASLTEQYKALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+I+ FT+D I +A+ A +N + +IGARRL TV+ER++EDISF AS+ + ++V ID Sbjct: 362 EGMIISFTDDGISKIAESAWQVNESTENIGARRLHTVLERLIEDISFEASERRGQSVDID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV+ H+ + ++ D+ FIL Sbjct: 422 ADYVKKHLDELVADEDLSRFIL 443 >gi|157828309|ref|YP_001494551.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933015|ref|YP_001649804.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia rickettsii str. Iowa] gi|166221604|sp|A8GRL8|HSLU_RICRS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043916|sp|B0BX22|HSLU_RICRO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157800790|gb|ABV76043.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908102|gb|ABY72398.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Rickettsia rickettsii str. Iowa] Length = 450 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/438 (50%), Positives = 318/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + +V Sbjct: 73 GKTEIARRLATLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTKVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ +F+IPG Sbjct: 133 HAREKAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDMIGRALGSSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSRAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVR 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K + ID ++V Sbjct: 373 LEFAASAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGKKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|170718714|ref|YP_001783904.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus 2336] gi|189043912|sp|B0US05|HSLU_HAES2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|168826843|gb|ACA32214.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus somnus 2336] Length = 443 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ + +NTR++FRKKLR+G++ D+EI+I++A + Sbjct: 124 EEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNIG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE ++ +A+ A +N +IGARRL TVMER+++ ISF AS++ + V+ID Sbjct: 362 EGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVIID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +YV +GD D+ HFIL Sbjct: 422 GDYVTGALGDVVENEDLSHFIL 443 >gi|17544761|ref|NP_518163.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum GMI1000] gi|21759167|sp|Q8Y3D8|HSLU_RALSO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|17427050|emb|CAD13570.1| probable atp-dependent hsl protease atp-binding subunit hslu protein [Ralstonia solanacearum GMI1000] Length = 443 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 312/444 (70%), Gaps = 16/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 4 TMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+ RES +VR + Sbjct: 64 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKVRAK 123 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+R+LD L+ + SN R+VFRKKLR+G++ DKEI++EVA + Sbjct: 124 AEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA---AG 180 Query: 176 ISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ + + Sbjct: 181 MPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNEEEL 239 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++VSTKYG I T Sbjct: 240 KHKAIANVEQNGIVFLDEIDKITSRSEHGGGEVSRQGVQRDLLPLVEGTTVSTKYGMIKT 299 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+ DF+ ILT T+++L QY+ LM Sbjct: 300 DHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQYQALM 359 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A +TV Sbjct: 360 KTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSGETVT 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV + + D+ ++L Sbjct: 420 IDAAYVDSRLNELAGSEDLSRYVL 443 >gi|239908473|ref|YP_002955215.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio magneticus RS-1] gi|239798340|dbj|BAH77329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desulfovibrio magneticus RS-1] Length = 457 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/456 (49%), Positives = 313/456 (68%), Gaps = 26/456 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+ LRDE+ PKNI+++GPTGVG Sbjct: 4 SLTPREIVSELDKYIIGQRDAKRMVAIAMRNRWRRQQIEPVLRDEIAPKNIIMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+ + VR + Sbjct: 64 KTEIARRLARLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRQEELERVRVK 123 Query: 126 ASINAEERILDALVGKTATS-----------------------NTREVFRKKLRDGEISD 162 A AEER+LD L+ ++ TR+ RK R+G++ D Sbjct: 124 AEKAAEERLLDLLLPESQRPAHGPIPMPAAIEAPAEPAGEQGLTTRDKLRKLWREGKLDD 183 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 + + +EV+ S + +PG +G +LFSK RKK M V++ Y ++++ Sbjct: 184 RMVPVEVSMPSPQVEIMSMPGMEEMGS-QFKDLFSKAFPQ-RKKTKTMRVREAYEVILQE 241 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEG 281 ESDRL+DMD V + + VE GI+F+DE DKI R G G VSREGVQRDLLP+VEG Sbjct: 242 ESDRLVDMDKVSETARERVEQTGIIFIDEIDKICGRQGGGQGPDVSREGVQRDLLPVVEG 301 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L DF ILT+ Sbjct: 302 CVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFHRILTEP 361 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L +QYK L+ TE + L+FT++++ +A A +N+ +IGARRL T+ME++L D+S Sbjct: 362 QNALTVQYKALLATENVTLEFTDEALREVAQFAQRINADTENIGARRLYTIMEKILSDLS 421 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F+ASD +TVV+D YVR + D + D+ +IL Sbjct: 422 FAASDQGGQTVVVDPAYVREKLADVAEDRDLSRYIL 457 >gi|87122852|ref|ZP_01078722.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121] gi|86161863|gb|EAQ63158.1| ATP-dependent protease ATP-binding subunit [Marinomonas sp. MED121] Length = 439 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/438 (52%), Positives = 312/438 (71%), Gaps = 9/438 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP +R E+ PKNIL++GPTGVGK Sbjct: 4 MTPRETVNALDEHIIGQQSAKRAVAIALRNRWRRMQLPEAMRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE + ++ +A Sbjct: 64 TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQASERLQNKA 123 Query: 127 SINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 + AE+RILDAL V T S+TR+VFRKKLR+G++ DKEIDI++A ++++ Sbjct: 124 ADAAEDRILDALLPPARGVEPTEDSSTRQVFRKKLREGQLDDKEIDIDLAAQAANVEIMT 183 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 PG + L +FS G + K ++ V+ ++ +E+ +LI+ D + +++ Sbjct: 184 PPGMEEM-TSQLQNMFSN-FGGEKTTKRKLKVKDALRQVRDEEAAKLINEDELKAQAVEA 241 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VE GIVFLDE DK+ + VSREGVQRDLLPLVEG +VSTKYG I TDHILFIA Sbjct: 242 VEQNGIVFLDEIDKVAKSSERSSGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILFIA 301 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+S+P+DL+PE+QGR P+RV L +L DF+ IL + ++L QY L TEG+ L Sbjct: 302 SGAFHLSKPSDLIPELQGRLPIRVELNALTVEDFKRILVEPNASLTKQYVALAATEGVTL 361 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +FTE+ I LA+VA +N T +IGARRL T++ER+LE++S+SASD+ + + V I AEYV Sbjct: 362 NFTEEGIHRLAEVAFKVNETTENIGARRLHTMLERLLEEVSYSASDMPDGQEVNITAEYV 421 Query: 420 RLHIGDFPSETDMYHFIL 437 +G+ + D+ +IL Sbjct: 422 DDQLGEVVEDEDLSRYIL 439 >gi|152978034|ref|YP_001343663.1| ATP-dependent protease ATP-binding subunit [Actinobacillus succinogenes 130Z] gi|171472945|sp|A6VL81|HSLU_ACTSZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|150839757|gb|ABR73728.1| heat shock protein HslVU, ATPase subunit HslU [Actinobacillus succinogenes 130Z] Length = 441 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/444 (52%), Positives = 309/444 (69%), Gaps = 17/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELD YIIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPREIVSELDAYIIGQSEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVG+ V+ IIRDL D+A+ +R+ ++ R + Sbjct: 63 KTEIARRLAKLANAPFVKVEATKFTEVGYVGKEVDTIIRDLTDMAVKQIRKIEVEKNRMK 122 Query: 126 ASINAEERILDALVGKTAT----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILD L+ + S TR+VFRKKLR+G + D EI++ D SS Sbjct: 123 AQDAAEERILDILLPRAKNKWGETEYEKDSATRQVFRKKLREGALDDSEIEV---DISSQ 179 Query: 176 ISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + N +I P G L LF + S KK+ RM V+ L+ DE+ +L++ + + Sbjct: 180 M-NVEIMTPPGMEEMTSQLQSLFEGLSPSHSKKR-RMKVKDAMKVLIDDEAAKLVNNEDL 237 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + +I+ VE GIVF+DE DKI + G VSREGVQRDLLP++EGS+V+TK+G + T Sbjct: 238 KQKAIESVEQNGIVFIDEIDKICKQSDRGGADVSREGVQRDLLPIIEGSTVNTKHGMVKT 297 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQYKELM Sbjct: 298 DHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPSASLTLQYKELM 357 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ ++FT D I +A+ A ++N +IGARRL TV+ER+++ ISF AS+ ++VV Sbjct: 358 KTEGVTVEFTPDGISKIAEAAFHVNEKTENIGARRLHTVLERLMDGISFDASERSGESVV 417 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 ID +YV + D D+ FIL Sbjct: 418 IDEKYVSEVLNDVVDNEDLSRFIL 441 >gi|83748663|ref|ZP_00945681.1| heat shock protein chaperone; cpX superfamily [Ralstonia solanacearum UW551] gi|207727528|ref|YP_002255922.1| atp-dependent hsl protease atp-binding subunit hslu protein [Ralstonia solanacearum MolK2] gi|207741920|ref|YP_002258312.1| atp-dependent hsl protease atp-binding subunit hslu protein [Ralstonia solanacearum IPO1609] gi|83724707|gb|EAP71867.1| heat shock protein chaperone; cpX superfamily [Ralstonia solanacearum UW551] gi|206590765|emb|CAQ56377.1| atp-dependent hsl protease atp-binding subunit hslu protein [Ralstonia solanacearum MolK2] gi|206593306|emb|CAQ60233.1| atp-dependent hsl protease atp-binding subunit hslu protein [Ralstonia solanacearum IPO1609] Length = 444 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SN R+VFRKKLR+G++ DKEI++EVA Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I VE GIVFLDE DKI +R + G G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+ DF+ ILT T+++L QY Sbjct: 297 MIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + LMKTE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ ++L Sbjct: 417 ETVTIDAAYVDSRLNELAGSEDLSRYVL 444 >gi|254516116|ref|ZP_05128176.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium NOR5-3] gi|219675838|gb|EED32204.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium NOR5-3] Length = 442 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 231/444 (52%), Positives = 309/444 (69%), Gaps = 16/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIV ELD++IIGQQDAKRAVA ALR+RWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVHELDKHIIGQQDAKRAVANALRSRWRRMQVEEGLRAEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLV++++ ++RE D++R + Sbjct: 63 KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESIIRDLVEMSVKMLREQAMDKMRFR 122 Query: 126 ASINAEERILDALVGKT------ATSN---TREVFRKKLRDGEISDKEIDIEV-ADTSSD 175 A AEERILD L+ ATS TR++ RKKLR+GE+ DKEID+E+ A ++ + Sbjct: 123 AEEAAEERILDVLLPGARDTKGDATSQGDGTRQLLRKKLREGELDDKEIDLELTAPSNVE 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 IS P G L +FS M + K R+ ++ + L +E+ +L++ D + + Sbjct: 183 IS---APPGMEEMTSQLQSMFSN-MARTQSKTRRLPIKAAFAALCDEEAAKLVNEDDIKQ 238 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +++ E GIVF+DE DK+ R G VSREGVQRDLLPL+EG +VSTKYG + TDH Sbjct: 239 NALHAAEQNGIVFIDELDKVAKRGETAGADVSREGVQRDLLPLIEGCTVSTKYGMLKTDH 298 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+ DFR IL + ++ L QY L+ T Sbjct: 299 ILFIASGAFHLSKPSDLIPELQGRMPIRVELAALSPEDFRRILVEPDTALTRQYSALLAT 358 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVV 413 EG+ L+FTED I +A++A LN +IGARRL TVMER+LED SF A+D L + Sbjct: 359 EGMTLEFTEDGIARIAELAWQLNENTENIGARRLHTVMERLLEDASFRAADDGLNASVLA 418 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +DA YV + D + D+ FIL Sbjct: 419 VDAAYVDSQLSDLAMDEDLSRFIL 442 >gi|302035682|ref|YP_003796004.1| heat shock protein hslVU, ATPase subunit [Candidatus Nitrospira defluvii] gi|300603746|emb|CBK40078.1| Heat shock protein HslVU, ATPase subunit [Candidatus Nitrospira defluvii] Length = 467 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/455 (50%), Positives = 312/455 (68%), Gaps = 24/455 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV LDRY+IGQ DAKR VAIALRNRWRRQQL +LRDE+MPKNI+++GPTGVG Sbjct: 14 SLTPRQIVEALDRYVIGQHDAKRMVAIALRNRWRRQQLAPELRDEVMPKNIIMIGPTGVG 73 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE +KFTE+GYVGR+VE IIRDL ++AI++V+ +EV+ + Sbjct: 74 KTEIARRLAKLAEAPFIKVEASKFTEVGYVGRDVESIIRDLTELAISLVKTKHLEEVQGK 133 Query: 126 ASINAEERILDALV----------------GKTATSN-------TREVFRKKLRDGEISD 162 AS + EER+LD L+ +T S TR R +LR+G++ Sbjct: 134 ASRHGEERLLDLLLPGAPSRPTSPGFEPSGARTDASEQIESADATRSKLRLQLREGKLDQ 193 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 + +++EV + + + GG NL ++ M G+KKK M V L ++ Sbjct: 194 RSVEVEVKERALPLGVISNAGGMEDLEGNLRDMLGG-MFQGKKKKRMMKVPDALKHLTQE 252 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 E+ +LIDMD V R++I VE GIVFLDE DKI R+ G VSREGVQRDLLP+VEGS Sbjct: 253 EAQKLIDMDEVVREAITKVEQTGIVFLDEIDKIAGRERAMGPDVSREGVQRDLLPIVEGS 312 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +VSTK+G++ TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L L K DF ILT+ Sbjct: 313 TVSTKHGAVQTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELAPLTKDDFVRILTEPR 372 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 L+ QY+ LM TEG+ ++F +D + +A AV +N +IGARRL T+MER+LE +SF Sbjct: 373 GALVRQYQALMATEGLTVEFADDGLAEIAATAVQVNERTENIGARRLFTIMERLLEQVSF 432 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 S+++EKT+V+DA YVR + + + D+ +IL Sbjct: 433 EGSEMKEKTIVVDAGYVRERLQNIVKDQDLSRYIL 467 >gi|269140778|ref|YP_003297479.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda EIB202] gi|267986439|gb|ACY86268.1| ATP-dependent protease ATP-binding subunit [Edwardsiella tarda EIB202] gi|304560538|gb|ADM43202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Edwardsiella tarda FL6-60] Length = 443 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ G+T +N R+ FRKKLR+GE+ DKEI+IE+A + Sbjct: 124 EEMAEERILDALIPPAKNNWGQTEQANESSPARQTFRKKLREGELDDKEIEIELAASPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G + K ++ ++ + +L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EG +V+TK+G + TDH Sbjct: 242 QAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS PADL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F+ D I +A+ A +N + +IGARRL TVMER++E+ISF AS++ + ID Sbjct: 362 EGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGAAIAID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|77456624|ref|YP_346129.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas fluorescens Pf0-1] gi|123758526|sp|Q3KJB6|HSLU_PSEPF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|77380627|gb|ABA72140.1| ATP-dependent hsl protease ATP-binding subunit hslu [Pseudomonas fluorescens Pf0-1] Length = 445 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 233/448 (52%), Positives = 314/448 (70%), Gaps = 18/448 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV EL+R+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKMLREQEMTRVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ T SNTR++FRK+LR+G++ DKEI+IEVA+ + Sbjct: 121 RAEDAAEDRILDALLPPARMGFSNEEAPTQDSNTRQLFRKRLREGQLDDKEIEIEVAEMA 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 P G L LF+ MG G+KK ++ V++ + +E+ RL++ + + Sbjct: 181 G--IEIATPPGMEEMTNQLQNLFAN-MGKGKKKARKLKVKEALKLVRDEEAGRLVNEEEL 237 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++ VE +GIVF+DE DK+ R + G VSREGVQRDLLPL+EG +V+TK G + T Sbjct: 238 KAKALEAVEQHGIVFIDEIDKVAKRGNVGGADVSREGVQRDLLPLIEGCTVNTKLGMVKT 297 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY L+ Sbjct: 298 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYCALL 357 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----E 409 KTEG+ + F + I LA++A +N +IGARRL T++ER+LE++SFSA DL + Sbjct: 358 KTEGLNIQFQPEGIKRLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLASAHDD 417 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K + IDAEYV H+G+ D+ +IL Sbjct: 418 KAIQIDAEYVNSHLGELAQNEDLSRYIL 445 >gi|238921643|ref|YP_002935158.1| ATP-dependent protease HslVU, ATPase subunit, [Edwardsiella ictaluri 93-146] gi|259491372|sp|C5BB81|HSLU_EDWI9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238871212|gb|ACR70923.1| ATP-dependent protease HslVU, ATPase subunit, putative [Edwardsiella ictaluri 93-146] Length = 443 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ G+T +N R+ FRKKLR+GE+ DKEI+IE+A + Sbjct: 124 EEMAEERILDALIPPAKNNWGQTEQTNESSPARQTFRKKLREGELDDKEIEIELAASPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G + K ++ ++ + +L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKVKIKDAFKQLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EG +V+TK+G + TDH Sbjct: 242 QAIDAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS PADL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F+ D I +A+ A +N + +IGARRL TVMER++E+ISF AS++ + ID Sbjct: 362 EGVNISFSADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMHGTAIAID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|157147271|ref|YP_001454590.1| ATP-dependent protease ATP-binding subunit HslU [Citrobacter koseri ATCC BAA-895] gi|166221475|sp|A8AKZ1|HSLU_CITK8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157084476|gb|ABV14154.1| hypothetical protein CKO_03063 [Citrobacter koseri ATCC BAA-895] Length = 443 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQSIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EEMAEERILDALIPPAKNNWGQAEQQQEPSAARQAFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV LK+L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELKALTTEDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE I +A+ A +N T +IGARRL TV+ER++EDIS+ ASDL +++ ID Sbjct: 362 EGVDIEFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|50123182|ref|YP_052349.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium atrosepticum SCRI1043] gi|62286796|sp|Q6CZ91|HSLU_ERWCT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|49613708|emb|CAG77159.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Pectobacterium atrosepticum SCRI1043] Length = 443 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAV+IALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ G S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G ++K ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQ-KQKAHKVKIKDAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TVMER++ED+S+ AS++ ++V+ID Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVIID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443 >gi|157825563|ref|YP_001493283.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia akari str. Hartford] gi|166221602|sp|A8GN00|HSLU_RICAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157799521|gb|ABV74775.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str. Hartford] Length = 450 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRCRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 73 GKTEIARRLAKLTYSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKTLAKTEVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ +F+IPG Sbjct: 133 NAREQAIERILDSLVGKTSSSETREKFKEKILNGELDDTEIEISVADTTPVGGGSFEIPG 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +G + K +M V+ ++ +ES++LID + + + +I + Sbjct: 193 MPGASMGVLNLGDVIGRALGGSKTKTKKMLVKDAMAIIIPEESEKLIDQEKIIQQAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + S +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTGSSGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKDDMIKILLEPETSLIKQYSALIGTEDVY 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + FT+ +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ + + ID ++V Sbjct: 373 IAFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKGRKITIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|113866231|ref|YP_724720.1| ATP-dependent protease ATP-binding subunit HslU [Ralstonia eutropha H16] gi|123134530|sp|Q0KF69|HSLU_RALEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|113525007|emb|CAJ91352.1| ATP-dependent protease HslVU, ATP-binding subunit [Ralstonia eutropha H16] Length = 443 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/448 (51%), Positives = 318/448 (70%), Gaps = 18/448 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SNTR+VFRKKLR+G + DKEI++E+ Sbjct: 121 RTKAEDAAEDRLLDVLLPPARDIGFSQPEEKDSNTRQVFRKKLREGSLDDKEIELEL--- 177 Query: 173 SSDISNFDIPGGASVGILNLSELFSKV---MGSGRKKKIRMSVQKCYPELMRDESDRLID 229 S+ + + DI G G+ +++E + +G G+K + +M V++ + L+ +E+ +L++ Sbjct: 178 SAGMPSMDIMGPP--GMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVN 235 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 236 DEELKHKAIANVEQNGIVFLDEIDKIASRSEIGGGEVSRQGVQRDLLPLVEGTTVSTKYG 295 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DF ILT T+++L QY Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTDASLTKQY 355 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A+ Sbjct: 356 QALLSTESVDLVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSG 415 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV I+A YV +GD D+ ++L Sbjct: 416 ETVTINAAYVDERLGDLAVNEDLSRYVL 443 >gi|300705554|ref|YP_003747157.1| ATPase of the hsluv protease, molecular chaperone [Ralstonia solanacearum CFBP2957] gi|299073218|emb|CBJ44576.1| ATPase component of the HslUV protease, molecular chaperone [Ralstonia solanacearum CFBP2957] Length = 445 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/449 (51%), Positives = 315/449 (70%), Gaps = 18/449 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SN R+VFRKKLR+G++ DKEI++EVA Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + + +I VE GIVFLDE DKI +R G G VSR+GVQRDLLPLVEG++VSTKY Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGGEVSRQGVQRDLLPLVEGTTVSTKY 296 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+ DF+ ILT T+++L Q Sbjct: 297 GMIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVGDFQAILTQTDASLTKQ 356 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ LMKTE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A Sbjct: 357 YQALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSS 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ ++L Sbjct: 417 GETVTIDAAYVDSRLNELAGSEDLSRYVL 445 >gi|120609505|ref|YP_969183.1| ATP-dependent protease ATP-binding subunit HslU [Acidovorax citrulli AAC00-1] gi|166221454|sp|A1TKC1|HSLU_ACIAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120587969|gb|ABM31409.1| heat shock protein HslVU, ATPase subunit HslU [Acidovorax citrulli AAC00-1] Length = 438 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/438 (51%), Positives = 307/438 (70%), Gaps = 8/438 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDRHIVGQSGAKRAVAIALRNRWRRQQVDPALRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+ RE+ +VR + Sbjct: 63 KTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADVKKVRAR 122 Query: 126 ASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 A AE+RILD L+ + A S R+VFRKKLR+G++ DKEI+I+VAD + Sbjct: 123 AEDAAEDRILDVLIPTARTGEQPADSTARQVFRKKLREGQLDDKEIEIDVADARPQLEIM 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 P G L +FS+ MG R+K ++ + + L +E+ +L++ + V ++Q Sbjct: 183 G-PQGMEEMAEQLRGMFSQ-MGHERRKARKLRIAEALKLLTDEEAGKLVNEEEVKTRALQ 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DK+ R G VSR+GVQRDLLPLVEG++VSTKYG + TDHILFI Sbjct: 241 NAEQNGIVFIDEIDKVATRQEAGGSDVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFI 300 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 SGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF ILT T ++L+ QY+ L+ TEG+ Sbjct: 301 TSGAFHLAKPSDLIPELQGRFPIRVELESLSVGDFEAILTQTHASLVKQYQALLATEGVT 360 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+F + I LA +A +N +IGARRL TVMER+L+++SF A+ L +TV +DA YV Sbjct: 361 LEFVPEGITRLAHIAFEVNERTENIGARRLSTVMERLLDEVSFDAAKLSGQTVRVDAAYV 420 Query: 420 RLHIGDFPSETDMYHFIL 437 + D+ +IL Sbjct: 421 DGRLASLSQNEDLSRYIL 438 >gi|88799638|ref|ZP_01115214.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297] gi|88777723|gb|EAR08922.1| heat shock protein HslVU, ATPase subunit HslU [Reinekea sp. MED297] Length = 440 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/439 (52%), Positives = 312/439 (71%), Gaps = 10/439 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++IIGQ +AKR+VAIALRNRWRR Q+ +RDE+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDKHIIGQDEAKRSVAIALRNRWRRMQVEEQMRDEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDL + I + RE VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIVRDLAETGIKLFREQEMHAVRPRA 123 Query: 127 SINAEERILDALV----GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 AE+RILD L+ G+ T N TR++FRKKLR GE+ DKEI++++A+TS + Sbjct: 124 EDAAEDRILDILLPQARGEDNTDNQDSSTRQIFRKKLRQGELDDKEIEVDIAETSVGVEI 183 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +FS MG +KK ++ +++ L +E+ +I+ D + + +I Sbjct: 184 MAPPGMEEM-TSQLQNMFSN-MGGQKKKTRKLKIKEALKALTDEEAAHMINEDELKQRAI 241 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 Q VE GIVF+DE DKI D+ G VSREGVQRDLLPL+EGS+++TKYG I TDHILF Sbjct: 242 QAVEQNGIVFIDEIDKIAKNDNRGGGDVSREGVQRDLLPLIEGSTINTKYGMIKTDHILF 301 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 I SGAFH S+P+DL+PE+QGR P+RV+L +L DF+ ILT+ ++ QYK LM++E + Sbjct: 302 IGSGAFHFSKPSDLIPELQGRLPIRVNLNALTPDDFKRILTEPNHSITEQYKALMRSEDL 361 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 + FTED+IDALA A +N + +IGARRL T+MER+ E+IS++AS+ +T VIDA+Y Sbjct: 362 DVTFTEDAIDALAKTAYQVNESTENIGARRLHTIMERLFENISYTASERSGETQVIDAQY 421 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ +G+ D+ FIL Sbjct: 422 VQDTLGELAQNEDLSRFIL 440 >gi|315633393|ref|ZP_07888684.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393] gi|315477893|gb|EFU68634.1| heat shock protein HslVU [Aggregatibacter segnis ATCC 33393] Length = 443 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL +R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQSDAKRAVAIALRNRWRRMQLQEPMRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIVKNRAKA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + + SNTR++FRKKLR+G++ DKE++I+VA S Sbjct: 124 EEAAEERILDALLPAAKNQWGEVENRDSQSNTRQIFRKKLREGQLDDKEVEIDVAGVSMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + GS KK+ +M ++ L+ DE+ +L++ + + + Sbjct: 184 VEIMAPPGMEDM-TSQLQSMFENLSGSQTKKR-KMKIKDALKTLIDDEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TVMER+++ ISF+ASD+ +TV ID Sbjct: 362 EGVNIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMDGQTVNID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 422 AAYVTEALGEVIENEDLSRFIL 443 >gi|303248943|ref|ZP_07335190.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio fructosovorans JJ] gi|302489666|gb|EFL49602.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio fructosovorans JJ] Length = 461 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/460 (49%), Positives = 319/460 (69%), Gaps = 30/460 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVSELD+YIIGQ+DAKR VAIA+RNRWRRQQ+ +LRDE+ PKNI+++GPTGVG Sbjct: 4 SLTPREIVSELDKYIIGQKDAKRMVAIAMRNRWRRQQIEPNLRDEIAPKNIIMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+ D V + Sbjct: 64 KTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRVAAK 123 Query: 126 ASINAEERILDALVGKT--------------------------ATSNTREVFRKKLRDGE 159 A AEER+LD L+ ++ A ++TRE RK R+G+ Sbjct: 124 AEKAAEERLLDLLLPESQRGGENPIPMPAALEAPAMAATPSEPAGASTREKLRKLWREGK 183 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + D+ + +EV+ S + +PG +G + ++FSKV RKK M V+ Y L Sbjct: 184 LDDRIVPVEVSVASPQVEIMSMPGMEDMG-MQFKDMFSKVFPQ-RKKTRNMRVRDAYEVL 241 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLP 277 +++ESDRL+DMD V + + VE GI+F+DE DKI + +G G G VSREGVQRDLLP Sbjct: 242 LQEESDRLVDMDKVAEAAKERVEQTGIIFIDELDKICGKQAGGGSGPDVSREGVQRDLLP 301 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEG V+TKYG + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L DF I Sbjct: 302 VVEGCVVNTKYGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFYRI 361 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ ++ L +QYK L+ TEG+ LDFT++++ +A+ A +N +IGARRL T+ME++L Sbjct: 362 LTEPKNALTVQYKALIGTEGVTLDFTDEALREVAEFAQRINEETENIGARRLYTIMEKIL 421 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D+SF+ASD +TVV+D YVR + D D+ +IL Sbjct: 422 SDLSFAASDQNGQTVVVDPAYVRDKLVDVAENRDLSRYIL 461 >gi|170769640|ref|ZP_02904093.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii TW07627] gi|170121448|gb|EDS90379.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia albertii TW07627] Length = 443 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL +T+ ID Sbjct: 362 EGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|261343009|ref|ZP_05970867.1| hypothetical protein ENTCAN_09612 [Enterobacter cancerogenus ATCC 35316] gi|288314761|gb|EFC53699.1| ATP-dependent protease HslVU, ATPase subunit [Enterobacter cancerogenus ATCC 35316] Length = 443 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+GE+ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQAEPSAARQAFRKKLREGELDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTED I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +++ I+ Sbjct: 362 EGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGESITIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVGKHLDALVADEDLSRFIL 443 >gi|113461678|ref|YP_719747.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus somnus 129PT] gi|123132272|sp|Q0I5E0|HSLU_HAES1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|112823721|gb|ABI25810.1| ATP-dependent ClpY-related protease [Haemophilus somnus 129PT] Length = 443 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ + +NTR++FRKKLR+G++ D+EI+I++A + Sbjct: 124 EEMAEERVLDTLLPPAKDQWGQIEERDTNTNTRQIFRKKLREGQLDDREIEIDIAAPNIG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKALIDDEAAKLINPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAKDFERILTEPNASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE ++ +A+ A +N +IGARRL TVMER+++ ISF AS++ + V+I+ Sbjct: 362 EGVDIEFTESAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMSGQNVIIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +YV +GD D+ HFIL Sbjct: 422 GDYVTGALGDVVENEDLSHFIL 443 >gi|160896907|ref|YP_001562489.1| ATP-dependent protease ATP-binding subunit HslU [Delftia acidovorans SPH-1] gi|160362491|gb|ABX34104.1| heat shock protein HslVU, ATPase subunit HslU [Delftia acidovorans SPH-1] Length = 445 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/441 (51%), Positives = 311/441 (70%), Gaps = 8/441 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQ + LR E+ PKNIL++GPT Sbjct: 7 MSSAMTPQEIVSELDRHIVGQAGAKRAVAIALRNRWRRQNVADGLRQEITPKNILMIGPT 66 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL +VA+ RE+ ++ Sbjct: 67 GVGKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTREADMKKL 126 Query: 123 REQASINAEERILDALV-----GKTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176 R +A AE+RILD LV G+ A NT R+VFRKKLR+G++ DKEI+I+VAD + Sbjct: 127 RLRAEDAAEDRILDVLVPQARSGEVAADNTARQVFRKKLREGQLDDKEIEIDVADAPPQV 186 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L +FS MG ++K ++ + + L +E+ +L++ + V Sbjct: 187 QIMG-PQGMEEMAEQLRGMFSH-MGQEKRKTRKLRIAEAMKLLTDEEAAKLVNEEDVRTR 244 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I E GIVF+DE DK+ R +G +SR+GVQRDLLPLVEG+SVSTKYG + TDHI Sbjct: 245 AIANAEQNGIVFIDEIDKVATRQETSGSDISRQGVQRDLLPLVEGTSVSTKYGVVKTDHI 304 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DF ILT T ++L+ QY+ L+ TE Sbjct: 305 LFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTHASLVKQYQALLATE 364 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L+FT + I LA +A ++N +IGARRL TV+ER+L+++SF A++L +T+ IDA Sbjct: 365 GVTLEFTPEGITRLAGIAFDVNERTENIGARRLSTVLERLLDEVSFDAANLSGQTISIDA 424 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + + D+ FIL Sbjct: 425 AYVDQRLQSLSQDEDLSRFIL 445 >gi|300692949|ref|YP_003753944.1| ATPase component of the HslUV protease, molecular chaperone [Ralstonia solanacearum PSI07] gi|299080009|emb|CBJ52684.1| ATPase component of the HslUV protease, molecular chaperone [Ralstonia solanacearum PSI07] Length = 444 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 231/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++AI RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SN R+VFRKKLR+G++ DKEI++E+A Sbjct: 121 RAKAEDAAEDRLLDVLIPPPRDIGFSQPEERDSNARQVFRKKLREGQLDDKEIELEIA-- 178 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAAKLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I VE GIVFLDE DKI +R + G G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEYGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAF +S+P+DL+PE+QGRFP+RV L SL+ DF+ ILT T+++L QY Sbjct: 297 MIKTDHILFIASGAFQLSKPSDLIPELQGRFPIRVELDSLSVDDFKAILTQTDASLTKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + LMKTE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ ++L Sbjct: 417 ETVTIDAAYVDNRLNELAGSEDLSRYVL 444 >gi|190575906|ref|YP_001973751.1| ATP-dependent protease ATP-binding subunit HslU [Stenotrophomonas maltophilia K279a] gi|190013828|emb|CAQ47466.1| putative ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Stenotrophomonas maltophilia K279a] Length = 457 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/451 (50%), Positives = 319/451 (70%), Gaps = 22/451 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QL +LR+E+MPKNIL++GPTGVG Sbjct: 10 TMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APF+KVE T+FTE+GYVG++VEQIIRDL D A+ + RE + VR Q Sbjct: 70 KTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQ 129 Query: 126 ASINAEERILDALVGK----------------TATSN-TREVFRKKLRDGEISDKEIDIE 168 A AE+RILDAL+ + +A N TR FRK LR+GE+ ++EI+++ Sbjct: 130 AEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDEREIELD 189 Query: 169 VA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 +A + S DI PG +G L +F+ + G + K ++++ P L+ +E+ +L Sbjct: 190 LAANVSMDI--MTPPGMEEMG-QQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKL 246 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST 286 ++ D + +I+ E +GIVF+DE DK+ R D+ G VSREGVQRDLLPLVEGS+VST Sbjct: 247 VNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVST 306 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG+I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF ILT+ ++ L Sbjct: 307 KYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALT 366 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ + FT D+I+ LA++A +N +IGARRL TV+ER+L+ +S+ A D Sbjct: 367 KQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPD 426 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +++ ID+ YV H+G+ + D+ +IL Sbjct: 427 RDGESLAIDSAYVDKHLGELVQDPDLSRYIL 457 >gi|33152977|ref|NP_874330.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi 35000HP] gi|33149202|gb|AAP96719.1| ATP-dependent hsl protease ATP-binding subunit HslU [Haemophilus ducreyi 35000HP] Length = 448 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/445 (50%), Positives = 312/445 (70%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL DLR E+ PKNIL++GPTGV Sbjct: 9 MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 68 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E ++ R Sbjct: 69 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 128 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V +T ++TR++FRKKLR+G + DKEIDI+VA Sbjct: 129 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQV- 187 Query: 175 DISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 N +I P G L LF M + +K +M ++ ++ +E+ +L++ + Sbjct: 188 ---NVEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEE 243 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TKYG + Sbjct: 244 LKQQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVK 303 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF ILT+ ++L LQY+EL Sbjct: 304 TDHILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYREL 363 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 MKTEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF A++ + + Sbjct: 364 MKTEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHI 423 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 VID +YV + D D+ FIL Sbjct: 424 VIDEKYVATALNDVVENEDLSRFIL 448 >gi|307128948|ref|YP_003880964.1| molecular chaperone and ATPase of HslUV protease [Dickeya dadantii 3937] gi|306526477|gb|ADM96407.1| molecular chaperone and ATPase component of HslUV protease [Dickeya dadantii 3937] Length = 443 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSMEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G + DKEI+IE+A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGSLDDKEIEIELAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKNR-KIKIREAFKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM+T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F D I +A+ A +N +IGARRL TV+ER++ED+S+ AS++ +TV ID Sbjct: 362 EGVNITFLPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMHGQTVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443 >gi|53803703|ref|YP_114447.1| ATP-dependent protease ATP-binding subunit HslU [Methylococcus capsulatus str. Bath] gi|62286765|sp|Q606K1|HSLU_METCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|53757464|gb|AAU91755.1| heat shock protein HslVU, ATPase subunit HslU [Methylococcus capsulatus str. Bath] Length = 440 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/440 (51%), Positives = 305/440 (69%), Gaps = 10/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+ A LRDE+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVHELDKHIVGQAEAKRAVAIALRNRWRRAQVGAPLRDEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++R++ +V+ + Sbjct: 63 KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLTDAAIKMIRQTETAKVQSR 122 Query: 126 ASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDIS 177 A AEER+LDALV +T N R+ FR+KLR GE++DKEI+I+V+ + Sbjct: 123 AEAAAEERVLDALVPHASTWNAGEEGDSPARQKFRQKLRAGELNDKEIEIDVSAAPIGVE 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L LF +GR + ++ V+ L +E+ ++I+ + + + Sbjct: 183 IMAPPGLEEMSS-QLQNLFQNFQ-AGRTRTRKLRVRDALKLLKEEEAGKMINEEEIKLRA 240 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 + VE GIVFLDE DKI R G VSREGVQRDLLPLVEG +VSTKYG+I TDHIL Sbjct: 241 VHAVEQNGIVFLDELDKICKRADYGGPDVSREGVQRDLLPLVEGCTVSTKYGTIRTDHIL 300 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+++P+DL+PE+QGRFP+RV L L+ DF ILT+ +++L QY L+ TEG Sbjct: 301 FIASGAFHLAKPSDLIPELQGRFPIRVELNPLSADDFVRILTEPDASLTAQYAALLATEG 360 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L+F + +I +A ++ +N +IGARRL TV+ER+LE+ISF A+D ++ IDA Sbjct: 361 VNLEFADSAIRRIAQISWEVNERTENIGARRLHTVLERLLEEISFDAADRSGTSITIDAG 420 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+G + D+ +IL Sbjct: 421 YVDAHLGSLALDEDLSRYIL 440 >gi|308051235|ref|YP_003914801.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica DSM 9799] gi|307633425|gb|ADN77727.1| heat shock protein HslVU, ATPase subunit HslU [Ferrimonas balearica DSM 9799] Length = 442 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/441 (51%), Positives = 302/441 (68%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AK+AVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQSGAKKAVAIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VEQIIRDL D AI + RE + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDSAIKMTREQEMARNKFRA 123 Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEER+LDAL+ K + TR+VFRKKLR+G++ DKEI+++V+ + Sbjct: 124 EEAAEERVLDALLPNPKDQWGNEQKADNTATRQVFRKKLREGQLDDKEIEVDVSQAQMGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +G +K + +M V+ + L+ +E+ +L+ + + Sbjct: 184 EIMAPPGMEEM-TNQLQSMFQN-LGGQQKDRRKMKVKDAFKLLVEEEAAKLVKPEELKEK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVFLDE DKI R +G VSREGVQRDLLPLVEG +V+TK+G + TDHI Sbjct: 242 AIEAVEQHGIVFLDEIDKICKRGEVSGPDVSREGVQRDLLPLVEGCTVNTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L SL DF ILT+ ++L QYK LM TE Sbjct: 302 LFIASGAFQLSKPSDLIPELQGRLPIRVELDSLTAEDFVRILTEPHASLTEQYKALMGTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ + FTED I +A+ A +N +IGARRL TVMER++E+ISF ASD +++ +DA Sbjct: 362 GVDVSFTEDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEEISFDASDKSGQSLTVDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV H+ + D+ FIL Sbjct: 422 AYVNAHLDTLVEDEDLARFIL 442 >gi|62286859|sp|Q7VKB3|HSLU_HAEDU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 440 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/445 (50%), Positives = 312/445 (70%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QL DLR E+ PKNIL++GPTGV Sbjct: 1 MSITPREIVSELDAHIIGQTEAKRAVAIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL +V++ +V+E ++ R Sbjct: 61 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGKEVDSIIKDLTEVSMKLVKEQAVEKNRI 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V +T ++TR++FRKKLR+G + DKEIDI+VA Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQETDNASTRQIFRKKLREGSLDDKEIDIDVASQV- 179 Query: 175 DISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 N +I P G L LF M + +K +M ++ ++ +E+ +L++ + Sbjct: 180 ---NVEIMTPPGMEEMTSQLQSLFEG-MSPNKTQKRKMKIKDALKVMLDEEAAKLVNQEE 235 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TKYG + Sbjct: 236 LKQQAIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLLPIIEGSTVNTKYGMVK 295 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI SGAF ++RP+DLLPE+QGR P+ V LKSL K+DF ILT+ ++L LQY+EL Sbjct: 296 TDHILFICSGAFQIARPSDLLPELQGRLPIHVELKSLTKADFERILTEPNASLTLQYREL 355 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 MKTEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF A++ + + Sbjct: 356 MKTEGVTIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDANERAGEHI 415 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 VID +YV + D D+ FIL Sbjct: 416 VIDEKYVATALNDVVENEDLSRFIL 440 >gi|317494767|ref|ZP_07953179.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917369|gb|EFV38716.1| heat shock protein HslVU [Enterobacteriaceae bacterium 9_2_54FAA] Length = 443 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMVRMQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI++E+A + Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIELELAASPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKARKIKIKEAFKLLIEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EG +VSTK+G + TDH Sbjct: 242 QAINAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D + +A+ A +N + +IGARRL T++ER++E+ISF ASD+ +TV ID Sbjct: 362 EGLTINFTADGVRHIAEAAWRVNESAENIGARRLHTILERLVEEISFEASDMSGQTVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYVR H+ + ++ D+ FIL Sbjct: 422 AEYVRNHLDELVADEDLSRFIL 443 >gi|237728044|ref|ZP_04558525.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter sp. 30_2] gi|226910301|gb|EEH96219.1| ATP-dependent hsl protease ATP-binding subunit hslU [Citrobacter sp. 30_2] Length = 443 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE I +A+ A +N T +IGARRL TV+ER++EDIS+ ASDL +++ ID Sbjct: 362 EGVDINFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|212219520|ref|YP_002306307.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii CbuK_Q154] gi|212013782|gb|ACJ21162.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella burnetii CbuK_Q154] Length = 465 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 19 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 79 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+GE+ DKEI++ Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV R+ G VSREGVQRDLLPLVEG Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465 >gi|161505410|ref|YP_001572522.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043917|sp|A9MI34|HSLU_SALAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|160866757|gb|ABX23380.1| hypothetical protein SARI_03565 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 443 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD LV G+T S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLVPPAKNNWGQTEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSLFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++E+IS++ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|299068385|emb|CBJ39609.1| ATPase component of the HslUV protease, molecular chaperone [Ralstonia solanacearum CMR15] Length = 444 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/448 (51%), Positives = 316/448 (70%), Gaps = 17/448 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P EIVSELD++IIGQQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MSETMTPSEIVSELDKHIIGQQKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL ++A+ RES +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120 Query: 123 REQASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 R +A AE+R+LD L+ + SN R+VFRKKLR+G++ DKEI++EVA Sbjct: 121 RVKAEDAAEDRLLDVLIPPPRDIGFAQPEEKDSNARQVFRKKLREGQLDDKEIELEVA-- 178 Query: 173 SSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + DI P G + +F+ +G G+K + +M V + + L+ +E+ +L++ Sbjct: 179 -AGMPGMDIMGPPGMEEMTEQIRSMFAG-LGQGKKHRRKMKVHEAFKLLVEEEAGKLVNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I VE GIVFLDE DKI +R + G G VSR+GVQRDLLPLVEG++VSTKYG Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKITSRSEHGGGGEVSRQGVQRDLLPLVEGTTVSTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAF +++P+DL+PE+QGRFP+RV L SL+ DF+ ILT T+++L QY Sbjct: 297 MIKTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELDSLSVDDFQAILTQTDASLTKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + LMKTE + L F +D I LA++A ++N V +IGARRL TVMER+LED+SF A Sbjct: 357 QALMKTEDVELVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + D+ ++L Sbjct: 417 ETVTIDATYVDSRLNELAGSEDLSRYVL 444 >gi|146313674|ref|YP_001178748.1| ATP-dependent protease ATP-binding subunit HslU [Enterobacter sp. 638] gi|167017227|sp|A4WG67|HSLU_ENT38 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145320550|gb|ABP62697.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter sp. 638] Length = 443 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADSAMKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQNEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R NG VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESNGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTDDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +++ ID Sbjct: 362 EGVTIEFTADGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYEASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|120553750|ref|YP_958101.1| ATP-dependent protease ATP-binding subunit HslU [Marinobacter aquaeolei VT8] gi|226704528|sp|A1TYU5|HSLU_MARAV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120323599|gb|ABM17914.1| heat shock protein HslVU, ATPase subunit HslU [Marinobacter aquaeolei VT8] Length = 443 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+++I+GQ++AKRAVAIALRNRWRR QL + LRDE+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNKHIVGQEEAKRAVAIALRNRWRRMQLDSSLRDEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+A+ ++RE +A Sbjct: 64 TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADMAVKMLREQEMKRHEHRA 123 Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILDAL+ A S+TR++FRKKLR+GE+ DKEI+I++ + + Sbjct: 124 LDAAEDRILDALLPPPRDFNEDSQRTNADSSTRQLFRKKLREGELDDKEIEIDLRSSGAG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +FS + S ++K +M V + +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFSN-LSSDKRKTRKMKVADAMKRVKDEEAAKLVNEEEIKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +IQ VE GIVF+DE DK+ R VSREGVQRDLLPL+EGS+VSTKYGSI TDH Sbjct: 242 KAIQAVEQNGIVFIDEIDKVAKRSENTSSDVSREGVQRDLLPLIEGSTVSTKYGSIRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ +++L+ QY+ LM T Sbjct: 302 ILFIASGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFKRILTEPDASLVQQYEALMGT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F +D+I +A+VA +N T +IGARRL TV+ER+LE +S+ A D T + Sbjct: 362 EGVKLTFADDAIARIAEVAYKVNETTENIGARRLHTVLERLLESLSYDAGDQVTDTFEVT 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV +G+ + D+ +IL Sbjct: 422 ADYVDEKLGELSEDEDLSRYIL 443 >gi|153206869|ref|ZP_01945687.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii 'MSU Goat Q177'] gi|161830731|ref|YP_001595964.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii RSA 331] gi|165918253|ref|ZP_02218339.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 334] gi|62286877|sp|Q83A94|HSLU_COXBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043908|sp|A9N9F8|HSLU_COXBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120576942|gb|EAX33566.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii 'MSU Goat Q177'] gi|161762598|gb|ABX78240.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 331] gi|165918113|gb|EDR36717.1| heat shock protein HslVU, ATPase subunit HslU [Coxiella burnetii RSA 334] Length = 447 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 1 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 61 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+GE+ DKEI++ Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 180 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 181 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 231 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV R+ G VSREGVQRDLLPLVEG Sbjct: 232 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 291 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 292 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 351 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 352 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 411 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 412 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 447 >gi|215919320|ref|NP_820987.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii RSA 493] gi|206584205|gb|AAO91501.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella burnetii RSA 493] Length = 465 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 19 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 79 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+GE+ DKEI++ Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV R+ G VSREGVQRDLLPLVEG Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465 >gi|283834705|ref|ZP_06354446.1| hypothetical protein CIT292_08923 [Citrobacter youngae ATCC 29220] gi|291069631|gb|EFE07740.1| ATP-dependent protease HslVU, ATPase subunit [Citrobacter youngae ATCC 29220] Length = 443 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNRFRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTGDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFTE I +A+ A +N T +IGARRL TV+ER++EDIS+ ASDL + + ID Sbjct: 362 EGVNIDFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|157155037|ref|YP_001465425.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli E24377A] gi|191166396|ref|ZP_03028227.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli B7A] gi|193063956|ref|ZP_03045042.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E22] gi|194427514|ref|ZP_03060063.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli B171] gi|209921411|ref|YP_002295495.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli SE11] gi|218556493|ref|YP_002389407.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli IAI1] gi|218697645|ref|YP_002405312.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli 55989] gi|260846649|ref|YP_003224427.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O103:H2 str. 12009] gi|293470244|ref|ZP_06664655.1| heat shock protein HslVU [Escherichia coli B088] gi|300819903|ref|ZP_07100087.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 107-1] gi|300825078|ref|ZP_07105173.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 119-7] gi|300921947|ref|ZP_07138096.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 182-1] gi|301328291|ref|ZP_07221407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 78-1] gi|307315162|ref|ZP_07594743.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W] gi|309796644|ref|ZP_07691050.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 145-7] gi|331670784|ref|ZP_08371620.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA271] gi|331680048|ref|ZP_08380710.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H591] gi|167017225|sp|A7ZUE6|HSLU_ECO24 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|226704524|sp|B7M6Y2|HSLU_ECO8A RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238065795|sp|B6I4S4|HSLU_ECOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|254802306|sp|B7LA28|HSLU_ECO55 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|157077067|gb|ABV16775.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E24377A] gi|190903496|gb|EDV63214.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli B7A] gi|192929421|gb|EDV83029.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E22] gi|194414554|gb|EDX30827.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli B171] gi|209914670|dbj|BAG79744.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE11] gi|218354377|emb|CAV01135.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli 55989] gi|218363262|emb|CAR00907.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli IAI1] gi|257761796|dbj|BAI33293.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O103:H2 str. 12009] gi|291321454|gb|EFE60893.1| heat shock protein HslVU [Escherichia coli B088] gi|300421671|gb|EFK04982.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 182-1] gi|300522430|gb|EFK43499.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 119-7] gi|300527543|gb|EFK48605.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 107-1] gi|300845253|gb|EFK73013.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 78-1] gi|306905421|gb|EFN35957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli W] gi|308119800|gb|EFO57062.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 145-7] gi|315063262|gb|ADT77589.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli W] gi|320198862|gb|EFW73460.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli EC4100B] gi|323161167|gb|EFZ47084.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E128010] gi|323182344|gb|EFZ67753.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 1357] gi|323380673|gb|ADX52941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli KO11] gi|323943669|gb|EGB39775.1| heat shock protein HslVU [Escherichia coli H120] gi|324020556|gb|EGB89775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 117-3] gi|324115667|gb|EGC09603.1| heat shock protein HslVU [Escherichia coli E1167] gi|331062039|gb|EGI33962.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA271] gi|331072374|gb|EGI43707.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H591] Length = 443 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL +T++ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTIIID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|218551085|ref|YP_002384876.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia fergusonii ATCC 35469] gi|226704527|sp|B7LUS3|HSLU_ESCF3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|218358626|emb|CAQ91276.1| molecular chaperone and ATPase component of HslUV protease [Escherichia fergusonii ATCC 35469] gi|324111448|gb|EGC05429.1| heat shock protein HslVU [Escherichia fergusonii B253] gi|325499331|gb|EGC97190.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia fergusonii ECD227] Length = 443 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FTE I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL +++ ID Sbjct: 362 EGVNIEFTESGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|260913429|ref|ZP_05919908.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325] gi|260632503|gb|EEX50675.1| heat shock protein HslVU [Pasteurella dagmatis ATCC 43325] Length = 443 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ I+RDL D A+ +VR++ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIVRDLTDSAMKLVRQTEIEKNRFRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILDAL+ S+TR+VFRKKLR+G++ DKEI+++VA S Sbjct: 124 EEAAEDRILDALLPPAKNQWGQVEASDNNSSTRQVFRKKLREGQLDDKEIEVDVAGVSMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + SG+ KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LSSGQTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEG++VSTK+G + TDH Sbjct: 242 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FTE +I +A+ A +N +IGARRL TVMER+++ ISF+AS++ + V ID Sbjct: 362 EGVNIAFTEGAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASEMNGQIVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV +GD D+ FIL Sbjct: 422 DAYVIEALGDVVENEDLSRFIL 443 >gi|283787388|ref|YP_003367253.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Citrobacter rodentium ICC168] gi|282950842|emb|CBG90519.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Citrobacter rodentium ICC168] Length = 443 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ ++ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQSEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++EDIS+ ASDL +++ ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|294638265|ref|ZP_06716518.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda ATCC 23685] gi|291088518|gb|EFE21079.1| ATP-dependent protease HslVU, ATPase subunit [Edwardsiella tarda ATCC 23685] Length = 443 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHSAKRAVAIALRNRWRRMQLGEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++R ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKMIRAQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+ SN R+ FRKKLR+GE+ DKEI+IE+A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSNENSPARQSFRKKLREGELDDKEIEIELAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G + K ++ ++ + +L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKTKPRKIKIKDAFKQLIEEEAAKLVNPEELKH 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DKI R +G VSREGVQRDLLPL+EG +V+TK+G + TDH Sbjct: 242 QAIEAVEQNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS PADL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQVSSPADLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TVMER++E+ISF AS++ + ID Sbjct: 362 EGVNITFTADGIRRIAEAAWQVNESAENIGARRLHTVMERLMEEISFDASEMNGTAITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|51473515|ref|YP_067272.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str. Wilmington] gi|62286790|sp|Q68X52|HSLU_RICTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|51459827|gb|AAU03790.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia typhi str. Wilmington] Length = 450 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/439 (50%), Positives = 321/439 (73%), Gaps = 7/439 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ AK+AVAIALRNR+RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIAVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F++K+ +GE+ D EI+I VADT+ +F+IP Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKEKVLNGELDDTEIEISVADTTPVGGGSFEIPC 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +GS + K +M ++ ++ +ES++LID + + + +I + Sbjct: 193 IPGASMGVLNLGDMIGRALGSSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 EN GIVF+DE DKI A S +G VSREGVQRDLLPL+EG++V+TKYG + TDHILF Sbjct: 253 ENDGIVFIDEIDKI-ASTSNSGAKNAEVSREGVQRDLLPLIEGTTVNTKYGPVKTDHILF 311 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DLLPE+QGR P+RV L L K D IL + E++LI QY L+ TE + Sbjct: 312 IASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTEEV 371 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L+FT+ +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K ++ID ++ Sbjct: 372 HLEFTDSAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDDKF 431 Query: 419 VRLHIGDFPSETDMYHFIL 437 V + + D+ F+L Sbjct: 432 VENQLSKIITNLDLAKFVL 450 >gi|220933249|ref|YP_002512148.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp. HL-EbGR7] gi|254802321|sp|B8GTA1|HSLU_THISH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|219994559|gb|ACL71161.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp. HL-EbGR7] Length = 444 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/445 (51%), Positives = 304/445 (68%), Gaps = 16/445 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELD++I+GQ+DAKRAVAIALRNRWRRQQLP LR E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVQELDKHIVGQKDAKRAVAIALRNRWRRQQLPEALRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVGR+VE IIRDLVD AI ++RE +VR + Sbjct: 63 KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAIKLLREQEMGKVRFR 122 Query: 126 ASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 A AEER+LD L+ S TR+ FRK+LR+G++ DKEI+I+V+ T Sbjct: 123 AEEAAEERVLDVLLPAPRQAGFMSEPASAPEQSETRQKFRKRLREGQLDDKEIEIQVSAT 182 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + PG + L LF + G GR + ++ ++ L +E+ R+++ D Sbjct: 183 PVGVEIMTPPGMEEMAS-QLQSLFQNI-GGGRSQTRKLKIRDAMKLLTDEEAARMVNQDE 240 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ VE GIVFLDE DK+ R G VSREGVQRDLLPLVEG +V+TK+G + Sbjct: 241 LKLRAVANVEQNGIVFLDEIDKVAKRGEYGGADVSREGVQRDLLPLVEGCTVNTKFGMVR 300 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L DF ILT+ +++L QY L Sbjct: 301 TDHILFIASGAFHLSKPSDLIPELQGRLPIRVELSALTAEDFVRILTEPDASLTEQYSAL 360 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 ++TEG+ ++F ED + +A++A +N +IGARRL TVMER+LE ISF A D Q V Sbjct: 361 LQTEGVEVNFAEDGVRRIAEIATRVNERTENIGARRLHTVMERLLEQISFEAPDHQ-GPV 419 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV + + + D+ +IL Sbjct: 420 SIDAAYVDERLEELVQDEDLSRYIL 444 >gi|26250698|ref|NP_756738.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli CFT073] gi|91213473|ref|YP_543459.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli UTI89] gi|110644267|ref|YP_671997.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli 536] gi|117626197|ref|YP_859520.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC O1] gi|170683012|ref|YP_001746318.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli SMS-3-5] gi|191172723|ref|ZP_03034261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli F11] gi|215489262|ref|YP_002331693.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O127:H6 str. E2348/69] gi|218560998|ref|YP_002393911.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli S88] gi|218692215|ref|YP_002400427.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli ED1a] gi|218701364|ref|YP_002408993.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli IAI39] gi|218707557|ref|YP_002415076.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli UMN026] gi|227885327|ref|ZP_04003132.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972] gi|237702964|ref|ZP_04533445.1| ATP-dependent protease ATP-binding subunit [Escherichia sp. 3_2_53FAA] gi|293407551|ref|ZP_06651470.1| hslU [Escherichia coli FVEC1412] gi|293413371|ref|ZP_06656032.1| heat shock protein HslVU [Escherichia coli B354] gi|298383299|ref|ZP_06992892.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia coli FVEC1302] gi|300899909|ref|ZP_07118117.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 198-1] gi|300938385|ref|ZP_07153132.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 21-1] gi|300975842|ref|ZP_07173191.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 45-1] gi|300986108|ref|ZP_07177722.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 200-1] gi|301022811|ref|ZP_07186652.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 69-1] gi|301048655|ref|ZP_07195667.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 185-1] gi|306813805|ref|ZP_07447981.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli NC101] gi|312969317|ref|ZP_07783519.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 2362-75] gi|331649785|ref|ZP_08350865.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli M605] gi|331660486|ref|ZP_08361420.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA206] gi|331665586|ref|ZP_08366484.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA143] gi|331675426|ref|ZP_08376176.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA280] gi|331685671|ref|ZP_08386254.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H299] gi|32129633|sp|Q8FBC0|HSLU_ECOL6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|122421651|sp|Q1R3Y6|HSLU_ECOUT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|122957817|sp|Q0TAD3|HSLU_ECOL5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|166221478|sp|A1AIA6|HSLU_ECOK1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|226704522|sp|B7MI63|HSLU_ECO45 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|226704523|sp|B7NU74|HSLU_ECO7I RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|226704525|sp|B7NFN0|HSLU_ECOLU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|226704526|sp|B1LNN6|HSLU_ECOSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|254802305|sp|B7UNQ1|HSLU_ECO27 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|254802307|sp|B7N2S2|HSLU_ECO81 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|26111129|gb|AAN83312.1|AE016770_112 ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia coli CFT073] gi|91075047|gb|ABE09928.1| ATP-dependent hslVU protease ATP-binding subunit hslU [Escherichia coli UTI89] gi|110345859|gb|ABG72096.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli 536] gi|115515321|gb|ABJ03396.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC O1] gi|170520730|gb|ACB18908.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli SMS-3-5] gi|190907027|gb|EDV66628.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli F11] gi|215267334|emb|CAS11783.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli O127:H6 str. E2348/69] gi|218367767|emb|CAR05561.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli S88] gi|218371350|emb|CAR19182.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli IAI39] gi|218429779|emb|CAR10741.2| molecular chaperone and ATPase component of HslUV protease [Escherichia coli ED1a] gi|218434654|emb|CAR15587.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli UMN026] gi|222035643|emb|CAP78388.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia coli LF82] gi|226902901|gb|EEH89160.1| ATP-dependent protease ATP-binding subunit [Escherichia sp. 3_2_53FAA] gi|227837703|gb|EEJ48169.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972] gi|281181001|dbj|BAI57331.1| ATP-dependent protease ATP-binding subunit [Escherichia coli SE15] gi|284924031|emb|CBG37130.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Escherichia coli 042] gi|291425468|gb|EFE98507.1| hslU [Escherichia coli FVEC1412] gi|291468119|gb|EFF10617.1| heat shock protein HslVU [Escherichia coli B354] gi|294490881|gb|ADE89637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli IHE3034] gi|298276333|gb|EFI17853.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Escherichia coli FVEC1302] gi|300299522|gb|EFJ55907.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 185-1] gi|300306416|gb|EFJ60936.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 200-1] gi|300356537|gb|EFJ72407.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 198-1] gi|300397360|gb|EFJ80898.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 69-1] gi|300410195|gb|EFJ93733.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 45-1] gi|300456655|gb|EFK20148.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 21-1] gi|305852803|gb|EFM53250.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli NC101] gi|307556074|gb|ADN48849.1| ATP-dependent hslVU protease ATP-binding subunit HslU [Escherichia coli ABU 83972] gi|307629006|gb|ADN73310.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli UM146] gi|312285864|gb|EFR13782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 2362-75] gi|312948506|gb|ADR29333.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O83:H1 str. NRG 857C] gi|315289638|gb|EFU49031.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 110-3] gi|315292703|gb|EFU52055.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 153-1] gi|315298416|gb|EFU57671.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 16-3] gi|320196805|gb|EFW71427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli WV_060327] gi|323189647|gb|EFZ74926.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli RN587/1] gi|323949421|gb|EGB45310.1| heat shock protein HslVU [Escherichia coli H252] gi|323954298|gb|EGB50083.1| heat shock protein HslVU [Escherichia coli H263] gi|323964284|gb|EGB59767.1| heat shock protein HslVU [Escherichia coli M863] gi|323974340|gb|EGB69469.1| heat shock protein HslVU [Escherichia coli TW10509] gi|324006727|gb|EGB75946.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 57-2] gi|324012498|gb|EGB81717.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 60-1] gi|327250569|gb|EGE62277.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli STEC_7v] gi|330908252|gb|EGH36771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli AA86] gi|331041418|gb|EGI13568.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli M605] gi|331052435|gb|EGI24472.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA206] gi|331057271|gb|EGI29261.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA143] gi|331067486|gb|EGI38891.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli TA280] gi|331077142|gb|EGI48357.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H299] Length = 443 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL +T+ ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQTITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|295095088|emb|CBK84178.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 443 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ DAKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDDAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+GE+ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQQPEPSAARQAFRKKLREGELDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R + +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF ++ P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIASPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +++ ID Sbjct: 362 EGVNIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVGKHLDALVADEDLSRFIL 443 >gi|261819535|ref|YP_003257641.1| ATP-dependent protease ATP-binding subunit HslU [Pectobacterium wasabiae WPP163] gi|261603548|gb|ACX86034.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium wasabiae WPP163] Length = 443 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAV+IALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQNKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRHQSIEKNRFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ G S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEDRILDVLIPPAKNNWGQAEGTQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KVKIKDAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TVMER++ED+S+ AS++ ++V ID Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|293393523|ref|ZP_06637833.1| heat shock protein HslVU [Serratia odorifera DSM 4582] gi|291423858|gb|EFE97077.1| heat shock protein HslVU [Serratia odorifera DSM 4582] Length = 443 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDGYIIGQSKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIERNRTRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L+ DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALSTEDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT D I +A+ A +N + +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTIDFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASESSGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ + ++ D+ FIL Sbjct: 422 AQYVGNHLDELVADEDLSRFIL 443 >gi|296136675|ref|YP_003643917.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia K12] gi|295796797|gb|ADG31587.1| heat shock protein HslVU, ATPase subunit HslU [Thiomonas intermedia K12] Length = 442 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/444 (50%), Positives = 313/444 (70%), Gaps = 13/444 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIVSELDR++IGQ AK+AVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNMTPREIVSELDRFVIGQVKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+ + R Sbjct: 61 GKTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRT 120 Query: 125 QASINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILD L+ T T+ TR++ RK+LR+G++ +KEI+I++A Sbjct: 121 RAEDRAEDRILDVLLPAPADSSGHTPSVTETNPTRQMLRKRLREGQLDNKEIEIDLAVHP 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + + PG + + +F+ MG R K +++V++ L+ +E+ +L++ D + Sbjct: 181 ASVDIMGPPGMEDM-TEQIRSMFAN-MGQTRSKTRKVTVREAQKLLIDEEAAKLVNEDEI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++ VE GIVFLDE DK+ +R G VSR+GVQRDLLPLVEG++VSTKYG + T Sbjct: 239 KAGALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF ILT T+++L QY L+ Sbjct: 299 DHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 T+G+ ++FT D I +A+VA +N +IGARRL TVMER+LE++SF A Q TV Sbjct: 359 ATDGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVK 418 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +DA V +GD + D+ ++L Sbjct: 419 VDATMVNERLGDIARDEDLSRYVL 442 >gi|238892334|ref|YP_002917068.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella pneumoniae NTUH-K2044] gi|262041701|ref|ZP_06014893.1| heat shock protein HslVU [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330004458|ref|ZP_08304952.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS 92-3] gi|238544650|dbj|BAH61001.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040963|gb|EEW42042.1| heat shock protein HslVU [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536616|gb|EGF62943.1| ATP-dependent protease HslVU, ATPase subunit [Klebsiella sp. MS 92-3] Length = 444 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 310/444 (69%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR D+ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERVLDVLIPPAKNNWGQTEPSQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++I VE +GIVF+DE DKI R GN G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L DF ILT+ +++ +QYK LM Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ ++FTED I +A A +N T +IGARRL TV+ER++EDIS+ AS++ +TV Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDAEYV H+ ++ D+ FIL Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444 >gi|291619409|ref|YP_003522151.1| HslU [Pantoea ananatis LMG 20103] gi|291154439|gb|ADD79023.1| HslU [Pantoea ananatis LMG 20103] gi|327395732|dbj|BAK13154.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Pantoea ananatis AJ13355] Length = 445 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/444 (51%), Positives = 312/444 (70%), Gaps = 15/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123 Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S+ R+ FRKKLR+G++ DKEI+I++A T Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQTSEPSSARQSFRKKLREGQLDDKEIEIDLAATGPG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKEAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 D+I VE +GIVF+DE DKI R N G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALM 361 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ + FT+D I +A+ A +N T +IGARRL TV+ER++EDIS+ ASD ++V Sbjct: 362 NTEGVNIHFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRSGESVT 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDAEYV H+ + ++ D+ FIL Sbjct: 422 IDAEYVGKHLDELVADEDLSRFIL 445 >gi|212213472|ref|YP_002304408.1| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii CbuG_Q212] gi|212011882|gb|ACJ19263.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella burnetii CbuG_Q212] Length = 465 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 314/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 19 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 79 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+GE+ DKEI++ Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEV 198 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV R+ G VSREGVQRDLLPLVEG Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKREGAVGADVSREGVQRDLLPLVEG 309 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALMADDFVRILTEP 369 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465 >gi|189043907|sp|A9KH31|HSLU_COXBN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 447 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 313/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 1 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 61 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 120 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+G + DKEI++ Sbjct: 121 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 180 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 181 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 231 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV RD G VSREGVQRDLLPLVEG Sbjct: 232 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEG 291 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 292 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 351 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 352 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 411 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 412 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 447 >gi|71278515|ref|YP_271019.1| ATP-dependent protease ATP-binding subunit HslU [Colwellia psychrerythraea 34H] gi|123760948|sp|Q47W03|HSLU_COLP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|71144255|gb|AAZ24728.1| heat shock protein HslVU, ATPase subunit HslU [Colwellia psychrerythraea 34H] Length = 443 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/443 (52%), Positives = 307/443 (69%), Gaps = 13/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIV ELD +I+GQ DAKRAVAIALRNRWRR QL DLR+E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVHELDSHIVGQSDAKRAVAIALRNRWRRMQLDKDLRNEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+AI +V+ES D V+ Sbjct: 63 KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADMAIKMVKESEMDRVKHL 122 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILD L+ K+ SNTR++FRKKLR+G++ DKEI++++A Sbjct: 123 AEEAAEERILDVLLPPARDGFGNDEKSDDSNTRQIFRKKLREGKLDDKEIELDLAAPQVG 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F M S + K ++ ++ L +E+ ++++ D + + Sbjct: 183 VEIMAPPGMEDM-TSQLQNMFQN-MSSEKTNKRKLKIKDALKALQEEEAAKIVNQDDIKQ 240 Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VE GIVF+DE DKI R DS G VSREGVQRDLLPLVEGS+VSTK+G I TD Sbjct: 241 KAIDAVEQNGIVFIDEIDKICKRADSSGGGDVSREGVQRDLLPLVEGSTVSTKHGMIKTD 300 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF +++P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY L+ Sbjct: 301 HILFIASGAFQMTKPSDLIPELQGRLPIRVELQALTADDFVRILTEPFASLTEQYIALLA 360 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ + FT+D I A+AD A +N T +IGARRL T+MER++ED+SF+A +T+ I Sbjct: 361 TEGVSVTFTDDGIKAIADSAWQVNETTENIGARRLHTMMERLVEDLSFNADQRSGETISI 420 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D YV + + + D+ FIL Sbjct: 421 DQAYVTKILSEVVKDEDLSRFIL 443 >gi|117923333|ref|YP_863950.1| ATP-dependent protease ATP-binding subunit HslU [Magnetococcus sp. MC-1] gi|166221591|sp|A0L3K1|HSLU_MAGSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|117607089|gb|ABK42544.1| heat shock protein HslVU, ATPase subunit HslU [Magnetococcus sp. MC-1] Length = 461 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/461 (51%), Positives = 316/461 (68%), Gaps = 31/461 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 F+PREIVSELDRYIIGQ AKRAVAIALRNRWRRQ+L A++R+E+ PKNIL++GPTGVG Sbjct: 3 EFTPREIVSELDRYIIGQNMAKRAVAIALRNRWRRQRLSAEMREEVYPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE I+RDLV++ I +V E + +V+ Q Sbjct: 63 KTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVESIVRDLVEMGITMVTEEAKVKVQFQ 122 Query: 126 ASINAEERILDALVGKTATSN----------------------------TREVFRKKLRD 157 A AEER+LD L+ +T +R+ RK LR+ Sbjct: 123 AEDQAEERLLDILLPLPSTGQGEGSAHFGLFGQMEGSSVKPEPTAQQKESRQKMRKMLRE 182 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 G++ D+EIDI++ + + ++ + +NL ++ +MG GR K R+ V + Sbjct: 183 GKLDDREIDIDLKEQRR-VPMMEVITPQGMEGINLQDMLGGLMG-GRTKTRRVKVGEAMK 240 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLL 276 L +E+ +L+D DTV + +I+ VE GIVFLDE DK+ AR S G VSREGVQRDLL Sbjct: 241 LLTEEEAGKLVDQDTVQQVAIERVEQSGIVFLDELDKVCARGSETRGGDVSREGVQRDLL 300 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 PLVEG++VSTKYG + +DHILFIASGAF +++P+DLLPE+QGR P+RV L+SL K +F Sbjct: 301 PLVEGTTVSTKYGMVKSDHILFIASGAFQLAKPSDLLPELQGRLPIRVELESLGKGEFVR 360 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ E+ L QY LM E I L FT++ I+ALA++A +N T +IGARRL TVME++ Sbjct: 361 ILTEPENALTRQYAALMGVENIELVFTDEGIEALAEIATRVNETAENIGARRLHTVMEKL 420 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L+++SFSA D + VVIDA YV + D ++ D+ FIL Sbjct: 421 LDELSFSAPDRGGERVVIDAAYVNRQLSDLAADEDLSRFIL 461 >gi|119505529|ref|ZP_01627601.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2080] gi|119458638|gb|EAW39741.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2080] Length = 436 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/437 (52%), Positives = 312/437 (71%), Gaps = 8/437 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIV LD++IIGQ +AKRAVAIALRNRWRRQQL DLR E+ PKNIL++GPTGVG Sbjct: 3 NMTPREIVHALDQHIIGQSEAKRAVAIALRNRWRRQQLEPDLRSEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE +IRDLV+ AI ++RE +VR + Sbjct: 63 KTEIARRLAKLANAPFVKVEATKFTEVGYVGRDVESMIRDLVETAITLLREEALIKVRTR 122 Query: 126 ASINAEERILDALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 A AEER+LD L+ +NTR++ RKKLR+G+++D+E++IEV +T+S + P Sbjct: 123 AKDAAEERLLDLLLPPDRDDNNANTRQLLRKKLREGDLNDREVEIEVKNTASSVDIMAPP 182 Query: 183 GGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G + L +F+ + G+ +K +Q+ L +E+ +LID D + ++ E Sbjct: 183 GMEEM-TQQLQGMFANLNKGGKPRK--APIQEALKLLEDEEASKLIDPDDLKAQALTAAE 239 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GI+F+DE DK+ R G VSREGVQRDLLPL+EG SV+TK+G+I TDHILFIASG Sbjct: 240 QTGIIFIDEIDKVAKRGEMGGADVSREGVQRDLLPLIEGCSVTTKHGTIKTDHILFIASG 299 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFH+S+PADL+PE+QGR P+RV L++L DFR ILT+ ++ L QY+ L+ TEG+ + F Sbjct: 300 AFHLSKPADLIPELQGRLPIRVELEALTTEDFRRILTEPKAALTAQYQALLATEGVKIHF 359 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVR 420 T+ ++ +A++A +N +IGARRL T MER+LE+ISFSASD + E V ID +YV Sbjct: 360 TDSGVERIAEIAWQVNERAENIGARRLATAMERLLEEISFSASDAGVGESEVTIDRDYVD 419 Query: 421 LHIGDFPSETDMYHFIL 437 +G+ S+ D+ FIL Sbjct: 420 SQLGELASDEDLSRFIL 436 >gi|251787764|ref|YP_003002485.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae Ech1591] gi|247536385|gb|ACT05006.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya zeae Ech1591] Length = 443 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEENLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVAIKMVRQQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEESHEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIREAFKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM+T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F D I +A+ A +N +IGARRL TV+ER++E++S+ AS++ +TV ID Sbjct: 362 EGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEEVSYGASEMSGQTVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443 >gi|209364282|ref|YP_001425418.2| ATP-dependent protease ATP-binding subunit HslU [Coxiella burnetii Dugway 5J108-111] gi|207082215|gb|ABS78184.2| ATP-dependent endopeptidase hsl ATP-binding subunit [Coxiella burnetii Dugway 5J108-111] Length = 465 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/456 (51%), Positives = 313/456 (68%), Gaps = 32/456 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PREIV+ELD++IIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGV Sbjct: 19 MTMTPREIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGV 78 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+ LAGAPF+K+E TKFTE+GYVGR+VE IIRDLVDVA+ + RE +V+ Sbjct: 79 GKTEIARRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKS 138 Query: 125 QASINAEERILDALV-----------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AEER+LDAL+ + S TR++FRKKLR+G + DKEI++ Sbjct: 139 LAEEAAEERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGGLDDKEIEV 198 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMR 221 EV+ S F+I +G + E+ S++ G S R K R+ V+ L Sbjct: 199 EVSAHPS----FEI-----MGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGE 249 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +E+ +L+D D + ++ VE GIVF+DE DKIV RD G VSREGVQRDLLPLVEG Sbjct: 250 EEAAKLVDEDQIKSTALASVEQNGIVFIDEIDKIVKRDGAVGADVSREGVQRDLLPLVEG 309 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV LK+L DF ILT+ Sbjct: 310 STVFTKYGMVKTDHILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEP 369 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L QY EL+KTE L FT+D I LA++A +N +IGARRL T+MER+LE++S Sbjct: 370 KASLTEQYTELLKTENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVS 429 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A+D Q +++ IDA+YV + + D+ +IL Sbjct: 430 FEATDKQGESITIDADYVNKQLKKLAEDEDLSRYIL 465 >gi|271502450|ref|YP_003335476.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii Ech586] gi|270346005|gb|ACZ78770.1| heat shock protein HslVU, ATPase subunit HslU [Dickeya dadantii Ech586] Length = 443 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVAIALRNRWRRMQLEESLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI +VR+ ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMVRQQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G + DKEI+IE+A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEENHEPSAARQAFRKKLREGLLDDKEIEIELAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKSR-KIKIREAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGDTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM+T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTRQYQALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F D I +A+ A +N +IGARRL TV+ER++ED+S+ AS++ +TV ID Sbjct: 362 EGVNITFQPDGIRRIAEAAWQVNERTENIGARRLHTVLERLIEDVSYGASEMNGQTVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRSHLDELVADEDLSRFIL 443 >gi|206890762|ref|YP_002249198.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio yellowstonii DSM 11347] gi|254802320|sp|B5YG00|HSLU_THEYD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|206742700|gb|ACI21757.1| heat shock protein HslVU, ATPase subunit HslU [Thermodesulfovibrio yellowstonii DSM 11347] Length = 445 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/447 (49%), Positives = 319/447 (71%), Gaps = 19/447 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV ELD++IIGQ+ AK+AVAIALRNR+RRQ LP +LRDE++PKNIL++GPTGVG Sbjct: 3 NLTPKKIVEELDKFIIGQESAKKAVAIALRNRFRRQLLPKELRDEILPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE +KFTE+GYVGR+VE IIRDL +VA+N+V++ + V+E+ Sbjct: 63 KTEIARRLARLVNAPFVKVEASKFTEVGYVGRDVESIIRDLTEVAMNMVKQEHTERVQEK 122 Query: 126 ASINAEERILDALVG-------------KTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 A AEER+LD L+ +T TRE RK+LR+G + ++ I+I D Sbjct: 123 ARQLAEERVLDILLPQPRYTRDMNEAEERTRYKETREKLRKQLREGILDERYIEI---DL 179 Query: 173 SSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + F I ++ + NL E+ + K+K ++ + + ++E+++LIDM Sbjct: 180 KEKVVPFGIISNVAMEEIEINLKEMLGSFLPEKVKRK-KVKIPEAIQLFTQEEANKLIDM 238 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + V +++I+ VE GIVF+DE DKI +R S G VSREGVQRDLLP+VEGS+V+TKYG Sbjct: 239 EKVTKEAIERVEQTGIVFIDEIDKIASRGSSYGPDVSREGVQRDLLPIVEGSTVTTKYGP 298 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL K +F ILT+ ++ LI QY Sbjct: 299 VKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELNSLGKEEFVRILTEPDNALIKQYI 358 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+FT+D I+ +AD++ +N +IGARRL TVME++LEDISF+AS+L+ + Sbjct: 359 ALLATEDVYLEFTQDGIEEIADISQQVNEKTENIGARRLHTVMEKLLEDISFNASELKGQ 418 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA++VR + + D+ +IL Sbjct: 419 KITIDAKFVREKLSEIIKSEDLSRYIL 445 >gi|78484749|ref|YP_390674.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira crunogena XCL-2] gi|78363035|gb|ABB41000.1| ATP-dependent hsl protease ATP-binding subunit HslU [Thiomicrospira crunogena XCL-2] Length = 440 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/441 (50%), Positives = 309/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD YI+GQ +AK++VAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 2 MTPKEIVHELDSYIVGQAEAKKSVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGVGK 61 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TK+TE+GYVGR V+ II+DLV+ AI + RE V+ +A Sbjct: 62 TEIARRLAKLANAPFIKVEATKYTEVGYVGREVDSIIKDLVENAIKMQREQAMKGVKNKA 121 Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEE+ILD L+ S TR+ FRK+LR+GE+ DKEI+I++ + Sbjct: 122 QDLAEEKILDILLPPARGREEDSYEHMSETRQKFRKRLREGELDDKEIEIDLNAAPPHVE 181 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L ++F + G+K K ++ +++ L +E+ R+ID + + + Sbjct: 182 IMGAPGMEEM-TNQLQDMFQG-LSQGKKNKRKLPIKQAMKLLTEEEAQRIIDQEDLKTKA 239 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 I+ VE GIVF+DE DK+ R G G G VSREGVQRDLLPL+EGS+VSTKYG I TDHI Sbjct: 240 IENVEQNGIVFIDEIDKVAKRQEGAGGGDVSREGVQRDLLPLIEGSTVSTKYGMIKTDHI 299 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LF+ASGAFH+++P+DL+PE+QGR P+RV LKSL DF ILT+ ++ LI Q EL+KTE Sbjct: 300 LFVASGAFHLAKPSDLIPELQGRLPIRVELKSLKVEDFIRILTEPKAALITQAIELLKTE 359 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT + I LA++A ++N T +IGARRL TVME +LE++SF+A D ++TV+ID Sbjct: 360 GVKIEFTGEGIKRLAEIAYHVNETTENIGARRLHTVMEHLLEEVSFNAPDFGQETVIIDE 419 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +V +G+ + D+ +IL Sbjct: 420 AFVNDRLGELSQDQDLSQYIL 440 >gi|206577264|ref|YP_002241200.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella pneumoniae 342] gi|288937836|ref|YP_003441895.1| heat shock protein HslVU, ATPase HslU [Klebsiella variicola At-22] gi|290513062|ref|ZP_06552425.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp. 1_1_55] gi|238065800|sp|B5XZ37|HSLU_KLEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|206566322|gb|ACI08098.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella pneumoniae 342] gi|288892545|gb|ADC60863.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella variicola At-22] gi|289774444|gb|EFD82449.1| heat shock protein HslVU, ATPase subunit HslU [Klebsiella sp. 1_1_55] Length = 444 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/444 (51%), Positives = 308/444 (69%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR D+ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERVLDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++I VE +GIVF+DE DKI R GN G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L DF ILT+ +++ +QYK LM Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ ++FTED I +A A +N T +IGARRL TV+ER++EDIS+ AS++ +TV+ Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVI 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDAEYV H+ ++ D+ FIL Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444 >gi|238750844|ref|ZP_04612342.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia rohdei ATCC 43380] gi|238710988|gb|EEQ03208.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia rohdei ATCC 43380] Length = 443 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDGYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRQQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EELAEERILDVLIPPAKNNWGQADENQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+ + ++ D+ FIL Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443 >gi|167551412|ref|ZP_02345167.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323718|gb|EDZ11557.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 443 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLASAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++E+IS++ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|94500583|ref|ZP_01307114.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65] gi|94427373|gb|EAT12352.1| ATP-dependent protease ATP-binding subunit [Oceanobacter sp. RED65] Length = 450 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/447 (50%), Positives = 306/447 (68%), Gaps = 16/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +IV ELD++I+GQ AKR+VAIALRNRWRR QLP D R+E+ PKNIL++GPTGVG Sbjct: 5 NLTPAQIVKELDKHIVGQSVAKRSVAIALRNRWRRMQLPEDFRNEITPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+ APFIKVE TKFTE+GYVGR+VE IIRDLV+ ++RE V E+ Sbjct: 65 KTEIARRLAKLSNAPFIKVEATKFTEVGYVGRDVETIIRDLVETGFKLLREQEMANVSER 124 Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A A ER+LDAL+ K S+TR +FRKK+ +GE+ DKEI+I+VA Sbjct: 125 AKEAAVERVLDALLRPARNSYETEADKPEDSSTRILFRKKVLNGEMDDKEIEIDVAQPQV 184 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + + +FS + GS + K +M+V+ + +E+ ++++D + Sbjct: 185 GVEIMAPPGMEDM-TNQIQSMFSNLGGSNKTNKRKMNVKDALKMIQDEEAHNMLNIDELK 243 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 ++++VE GIVF+DE DK+ R G VSREGVQRDLLPL+EG SVSTKYG + TD Sbjct: 244 SQAVELVEQNGIVFIDEIDKVAKRQEAGGGDVSREGVQRDLLPLIEGCSVSTKYGMLKTD 303 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QYK L+ Sbjct: 304 HILFIASGAFHLSKPSDLIPELQGRLPIRVELEALTPDDFKRILTEPSASLTEQYKALLG 363 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEK 410 TEG+ ++FTED I+ LA A +N T +IGARRL T+MER+LE +SF A L + Sbjct: 364 TEGLSVEFTEDGIERLAQTAFKVNETTENIGARRLHTMMERLLEKVSFDAESLATQYSQT 423 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 + I+A +V H+GD + D+ FIL Sbjct: 424 PLQINAAFVDEHLGDIAQDEDLSRFIL 450 >gi|157827342|ref|YP_001496406.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia bellii OSU 85-389] gi|157802646|gb|ABV79369.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU 85-389] Length = 452 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 15 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 75 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ER+L++LVGKT++S TRE F++K+ GE+ D EI+I VADT+ +F+IPG Sbjct: 135 NAREKAIERVLESLVGKTSSSETREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + G+ + K +M V++ ++ +ES++LID + + + +I +V Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254 Query: 242 ENYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI VA +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+FT +I+ +AD A +N + DIGARRL T++E +LEDISF AS++Q + + ID ++V Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 435 ENQLSKILTNLDLAKFVL 452 >gi|226326796|ref|ZP_03802314.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198] gi|225204633|gb|EEG86987.1| hypothetical protein PROPEN_00656 [Proteus penneri ATCC 35198] Length = 444 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREI SELDR+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR D+ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIDKNRFRA 123 Query: 127 SINAEERILDALVGK-----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+IE++ T Sbjct: 124 EEMAEERILDVLIPPAKNNWGVAEQASEPSAARQSFRKKLREGQLDDKEIEIELSATPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M ++ + ++ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKDAFKLIVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 QAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ LM Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYEALMA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ + FTED I +A+ A +N T +IGARRL TV+ER++E+IS+ AS+ Q ++++I Sbjct: 362 TEGVSISFTEDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGQSILI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYV+ H+ + ++ D+ FIL Sbjct: 422 DAEYVKQHLDELVADEDLSRFIL 444 >gi|319791658|ref|YP_004153298.1| heat shock protein hslvu, atpase subunit hslu [Variovorax paradoxus EPS] gi|315594121|gb|ADU35187.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus EPS] Length = 442 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/444 (50%), Positives = 310/444 (69%), Gaps = 13/444 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P EIVSELD +I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPHEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVDEKLRSEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL ++A+ RES +VR Sbjct: 61 GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIIRDLAEIAVKQTRESESAKVRA 120 Query: 125 QASINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILD L+ G TA + TR+ FRKKLR+ ++ DKEI++++A+T Sbjct: 121 RAEDAAEDRILDVLLPPARGADGATAAIDGPNPTRQAFRKKLREHQLDDKEIELDLAETR 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + + P G L +F + MG G++K ++ + + L+ +E+ +L++ D + Sbjct: 181 TPLEIMG-PAGMEEMTEQLRGMFGQ-MGGGKRKTRKLKIAEALRLLIDEEAAKLVNEDEI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I E GIVF+DE DK+ R G VSR+GVQRDLLPLVEG++V+TKYG + T Sbjct: 239 RAQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVTTKYGVVRT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF ILT T ++L+ QY+ L+ Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ LDF D + LA +A +N +IGARRL TVMER+L+++SF A+ ++ +T+ Sbjct: 359 ATEGVTLDFQPDGVTRLASIAFEVNERTENIGARRLSTVMERLLDEVSFGAARIEGQTIR 418 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV + + D+ FIL Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442 >gi|91205631|ref|YP_537986.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii RML369-C] gi|123388112|sp|Q1RIB7|HSLU_RICBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91069175|gb|ABE04897.1| Heat shock protein HslVU, ATPase subunit HslU [Rickettsia bellii RML369-C] Length = 452 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/438 (50%), Positives = 319/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ+ AK+AVAIALRNR RR+++ +LR+E++PKNIL++G TGV Sbjct: 15 MGLTPSQIVNELNRFIVGQEKAKKAVAIALRNRGRRKRVEGNLRNEIVPKNILMIGSTGV 74 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + EV Sbjct: 75 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTQKTIAKTEVDI 134 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ER+L++LVGKT++S TRE F++K+ GE+ D EI+I VADT+ +F+IPG Sbjct: 135 NAREKAIERVLESLVGKTSSSKTREKFQEKILSGELDDTEIEISVADTAPVGGGSFEIPG 194 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + G+ + K +M V++ ++ +ES++LID + + + +I +V Sbjct: 195 MPGASMGVLNLGDMIGRAFGTTKTKTKKMLVKEAMSIILSEESEKLIDQEKIIQQAINLV 254 Query: 242 ENYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI VA +SREGVQ+DLLPL+EG++V+TKYG + TDHILFI Sbjct: 255 ENDGIVFIDEIDKIASVANSGAKNSEISREGVQKDLLPLIEGTTVNTKYGPVKTDHILFI 314 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L SL K D IL + E++LI QY L+ TE + Sbjct: 315 ASGAFHIAKPSDLLPELQGRLPIRVELNSLTKEDMIKILLEPETSLIKQYSALIGTEKVE 374 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+FT +I+ +AD A +N + DIGARRL T++E +LEDISF AS++Q + + ID ++V Sbjct: 375 LEFTNSAIEKIADYATTVNLEIEDIGARRLHTILENLLEDISFRASEMQGEKISIDDKFV 434 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 435 ENQLSKILTNLDLAKFVL 452 >gi|332159730|ref|YP_004296307.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318603861|emb|CBY25359.1| ATP-dependent hsl protease ATP-binding subunit HslU [Yersinia enterocolitica subsp. palearctica Y11] gi|325663960|gb|ADZ40604.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858960|emb|CBX69322.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia enterocolitica W22703] Length = 443 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+ + ++ D+ FIL Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443 >gi|192359011|ref|YP_001980928.1| ATP-dependent protease ATP-binding subunit HslU [Cellvibrio japonicus Ueda107] gi|226704519|sp|B3PI65|HSLU_CELJU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|190685176|gb|ACE82854.1| heat shock protein HslVU, ATPase subunit HslU [Cellvibrio japonicus Ueda107] Length = 440 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 315/441 (71%), Gaps = 12/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELD++I+GQQDAKRAVAIALRNRWRR QLPAD+R E+ PKNIL++GPTGVG Sbjct: 3 SMTPREIVHELDKHIVGQQDAKRAVAIALRNRWRRMQLPADMRSEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVDVAI + RE V+ + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDVAIKLRREQAMKAVQYR 122 Query: 126 ASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A+ AEERILD L+ S+TR++FRKKLR+G++ DKEI+I+VA S + Sbjct: 123 AAEAAEERILDVLLPPARDTSEEESKHESSTRQIFRKKLREGQLDDKEIEIDVAAASVGV 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +FS +G R KK +M+V+K + +L +E+ +L+ + + Sbjct: 183 EIMAPPGMEEM-TSQLQNMFSS-LGRERTKKTKMTVKKAFKQLQDEEAAKLVSEEDIKTQ 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +++ VE GIVF+DE DK+ R + +G VSREGVQRDLLPL+EG +VSTK+G + TDHI Sbjct: 241 ALETVEQNGIVFIDEIDKVARRGNVSGADVSREGVQRDLLPLIEGCTVSTKHGMVKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAFH+S+P+DL+PE+QGR P+RV L++L DF ILT+ +++L Q + L+KTE Sbjct: 301 LFITSGAFHLSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPKASLTEQQQALLKTE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ + FT+D I +A+ A ++N +IGARRL T++ER+LED+SF A + ++ ID Sbjct: 361 GVDIQFTQDGIRRIAETAFDVNERTENIGARRLHTILERLLEDVSFDAGN-DTSSIRIDG 419 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV H+G+ D+ +IL Sbjct: 420 AYVDAHLGELAKNEDLSRYIL 440 >gi|311281625|ref|YP_003943856.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae SCF1] gi|308750820|gb|ADO50572.1| heat shock protein HslVU, ATPase subunit HslU [Enterobacter cloacae SCF1] Length = 444 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/444 (51%), Positives = 309/444 (69%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQAQEPSAARQAFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 D+I+ VE +GIVF+DE DKI R GN G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKR-GGNTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L DF ILT+ +++ +QYK LM Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTQDFERILTEPNASVTVQYKALM 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ + FTE I +A+ A +N T +IGARRL TV+ER++EDIS+ ASDL +++ Sbjct: 361 ATEGVDISFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSIT 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDAEYV H+ ++ D+ FIL Sbjct: 421 IDAEYVSKHLDALVADEDLSRFIL 444 >gi|16767357|ref|NP_462972.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415935|ref|YP_153010.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182550|ref|YP_218967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617227|ref|YP_001591192.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167991667|ref|ZP_02572766.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233036|ref|ZP_02658094.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237718|ref|ZP_02662776.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244150|ref|ZP_02669082.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263003|ref|ZP_02684976.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467437|ref|ZP_02701274.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821555|ref|ZP_02833555.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444107|ref|YP_002043354.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449297|ref|YP_002048094.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470697|ref|ZP_03076681.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194733928|ref|YP_002117012.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248426|ref|YP_002149019.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264234|ref|ZP_03164308.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364862|ref|YP_002144499.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242037|ref|YP_002218017.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388213|ref|ZP_03214825.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930203|ref|ZP_03221180.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354333|ref|YP_002228134.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859278|ref|YP_002245929.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585902|ref|YP_002639701.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912237|ref|ZP_04656074.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|17865713|sp|O30911|HSLU_SALTY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|62286734|sp|Q5PIR9|HSLU_SALPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|81309527|sp|Q57HC6|HSLU_SALCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|189043918|sp|A9MZI1|HSLU_SALPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690015|sp|B5F0S2|HSLU_SALA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690346|sp|B5FPU0|HSLU_SALDC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690415|sp|B5QXM0|HSLU_SALEP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690527|sp|B5RF80|HSLU_SALG2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690605|sp|B4TCM8|HSLU_SALHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690712|sp|B4TPV2|HSLU_SALSV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238690772|sp|B5BJK8|HSLU_SALPK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|238693575|sp|B4T0T8|HSLU_SALNS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|254802316|sp|C0Q441|HSLU_SALPC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|9650897|emb|CAC00720.1| heat shock protein [Salmonella typhimurium] gi|16422658|gb|AAL22931.1| ATPase component of the HslUV protease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130192|gb|AAV79698.1| heat shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130183|gb|AAX67886.1| ATPase component of the HslUV protease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366591|gb|ABX70359.1| hypothetical protein SPAB_05068 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402770|gb|ACF62992.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407601|gb|ACF67820.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457061|gb|EDX45900.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709430|gb|ACF88651.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630235|gb|EDX48875.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096339|emb|CAR61943.1| heat shock protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212129|gb|ACH49526.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242489|gb|EDY25109.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289363|gb|EDY28728.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936553|gb|ACH73886.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605311|gb|EDZ03856.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320607|gb|EDZ05809.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274114|emb|CAR39123.1| heat shock protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330063|gb|EDZ16827.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332829|gb|EDZ19593.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336943|gb|EDZ23707.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341830|gb|EDZ28594.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348092|gb|EDZ34723.1| heat shock protein HslVU, ATPase subunit HslU [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711081|emb|CAR35455.1| heat shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470430|gb|ACN48260.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249207|emb|CBG27069.1| heat shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996391|gb|ACY91276.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160598|emb|CBW20129.1| heat shock protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915207|dbj|BAJ39181.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088502|emb|CBY98261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225383|gb|EFX50441.1| ATP-dependent hsl protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613146|gb|EFY10090.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619226|gb|EFY16109.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626093|gb|EFY22905.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626447|gb|EFY23253.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632439|gb|EFY29187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635079|gb|EFY31800.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642719|gb|EFY39309.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646455|gb|EFY42966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650757|gb|EFY47158.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652941|gb|EFY49278.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657255|gb|EFY53535.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662257|gb|EFY58472.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666790|gb|EFY62966.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672062|gb|EFY68177.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675783|gb|EFY71855.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681800|gb|EFY77826.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684004|gb|EFY80013.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717048|gb|EFZ08619.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132437|gb|ADX19867.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193276|gb|EFZ78491.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197633|gb|EFZ82766.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200792|gb|EFZ85863.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207202|gb|EFZ92154.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211405|gb|EFZ96246.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218550|gb|EGA03258.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220968|gb|EGA05400.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225945|gb|EGA10164.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231624|gb|EGA15736.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236128|gb|EGA20206.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239451|gb|EGA23500.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243956|gb|EGA27967.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249318|gb|EGA33235.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250439|gb|EGA34322.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258893|gb|EGA42545.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260137|gb|EGA43760.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265256|gb|EGA48753.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270478|gb|EGA53924.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625809|gb|EGE32154.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629458|gb|EGE35801.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990920|gb|AEF09903.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 443 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++E+IS++ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|209395997|ref|YP_002273451.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4115] gi|238065794|sp|B5YZ71|HSLU_ECO5E RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|209157397|gb|ACI34830.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4115] Length = 443 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQNNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|256823470|ref|YP_003147433.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis DSM 16069] gi|256797009|gb|ACV27665.1| heat shock protein HslVU, ATPase subunit HslU [Kangiella koreensis DSM 16069] Length = 444 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/447 (50%), Positives = 310/447 (69%), Gaps = 17/447 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV ELD++IIGQ+DAKR+VAIALRNRWRR Q+ +LR+E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELDKHIIGQKDAKRSVAIALRNRWRRMQVDEELRNEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDLVD A ++RE +V+ Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVDAAFKMLREQEMAKVQN 120 Query: 125 QASINAEERILDALVG--------------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170 +A AEER+LDAL+ ++ S+ R+VFRKKLR GE+ DK+I+I+VA Sbjct: 121 RAHDAAEERVLDALLPPPRKTSDSQWDEQPQSQDSSARQVFRKKLRQGELDDKDIEIDVA 180 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + I PG + L +F M + K+ ++ V+ L +E+ +LID Sbjct: 181 QMAVGIDIMAPPGMEDM-TSQLQSMFQN-MSPSKSKQRKLKVKDALKMLTEEEAAKLIDQ 238 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + +++ VE +GIVFLDE DK+ R N GVSREGVQRDLLPLVEG +V+TKYG Sbjct: 239 EELKIKAVEAVEQHGIVFLDEIDKVAKRGEHNDGGVSREGVQRDLLPLVEGCTVNTKYGM 298 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L DF+ ILT+ ++ L QY+ Sbjct: 299 LKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELRALTPDDFKRILTEPDAALTKQYQ 358 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG + F E I+ +A+ A +N + +IGARRL TVMER+L++ISF AS+ E Sbjct: 359 ALLATEGKKIQFDESGIEKIAEYAFQVNESTENIGARRLHTVMERLLDEISFDASEDNE- 417 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ID YV + + + D+ FIL Sbjct: 418 TLLIDDAYVTKQLSELADDEDLSRFIL 444 >gi|152972726|ref|YP_001337872.1| ATP-dependent protease ATP-binding subunit HslU [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166221589|sp|A6TGC1|HSLU_KLEP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|150957575|gb|ABR79605.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 444 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/444 (51%), Positives = 307/444 (69%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+V+IALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVSIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR D+ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMSPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++I VE +GIVF+DE DKI R GN G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 EAIDAVEQHGIVFIDEIDKICKR-GGNASGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV LK+L DF ILT+ +++ +QYK LM Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELKALTTHDFERILTEPNASITVQYKALM 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ ++FTED I +A A +N T +IGARRL TV+ER++EDIS+ AS++ +TV Sbjct: 361 ATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYDASEMNGQTVT 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDAEYV H+ ++ D+ FIL Sbjct: 421 IDAEYVSKHLDVLVADEDLSRFIL 444 >gi|304398972|ref|ZP_07380841.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB] gi|304353432|gb|EFM17810.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. aB] Length = 445 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/444 (50%), Positives = 312/444 (70%), Gaps = 15/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A +S Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASSPG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 D+I+ VE +GIVF+DE DKI R N G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF+ ILT+ +++ +QYK LM Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKALM 361 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ ++FTE+ I +A+ A +N T +IGARRL TV+ER++EDIS+ ASD ++ Sbjct: 362 NTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESFT 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA+YV H+ + ++ D+ FIL Sbjct: 422 IDADYVAKHLDELVADEDLSRFIL 445 >gi|16762344|ref|NP_457961.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143832|ref|NP_807174.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161768|ref|ZP_03347478.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416546|ref|ZP_03349690.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426207|ref|ZP_03358957.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213615559|ref|ZP_03371385.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648009|ref|ZP_03378062.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289828420|ref|ZP_06546302.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21759176|sp|Q8Z2Z0|HSLU_SALTI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|25296071|pir||AB0939 heat shock protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504648|emb|CAD09532.1| heat shock protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139468|gb|AAO71034.1| heat shock protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++E+IS++ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVSKHLDALVADEDLSRFIL 443 >gi|238754734|ref|ZP_04616086.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia ruckeri ATCC 29473] gi|238707042|gb|EEP99407.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia ruckeri ATCC 29473] Length = 440 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR + R +A Sbjct: 61 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIENNRYRA 120 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 121 EELAEERILDVLIPPAKNNWGQPDESQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPMG 180 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 181 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 238 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 239 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 298 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 299 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALMAT 358 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT + I +A+ A +N +IGARRL TV+ER++EDISF AS+ +++ ID Sbjct: 359 EGVTIDFTAEGIRRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASESNGQSITID 418 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ + ++ D+ FIL Sbjct: 419 AKYVGDHLDELVADEDLSRFIL 440 >gi|83589878|ref|YP_429887.1| ATP-dependent protease ATP-binding subunit HslU [Moorella thermoacetica ATCC 39073] gi|83572792|gb|ABC19344.1| heat shock protein HslVU, ATPase subunit HslU [Moorella thermoacetica ATCC 39073] Length = 461 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/462 (48%), Positives = 321/462 (69%), Gaps = 30/462 (6%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +F+PR+IV+ELDRYIIGQ++AK+ VA+ALRNR+RRQ+L +LRDE++PKNI+++GPTGV Sbjct: 1 MDFTPRQIVAELDRYIIGQEEAKKCVAVALRNRYRRQKLNPELRDEVLPKNIIMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L GAPF+KVE T+FTE+GYVGR+VE +IR+LV+ A+ +V+ +R EV Sbjct: 61 GKTEIARRLAKLVGAPFLKVEATRFTEVGYVGRDVESMIRELVENAVRMVKIEKRAEVEA 120 Query: 125 QASINAEERILDALV---GKTATSNT--------------------------REVFRKKL 155 +A+ AE+R+LD LV GK ++ R + R+KL Sbjct: 121 KAAKMAEKRLLDLLVPRQGKEKGTHNPWEVLFGGAQVNSEGTVLEEESLREKRAILREKL 180 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R E+ D +++EV DT+ G +NL ++ ++ RK+K ++V + Sbjct: 181 RRQELEDMMVEVEVEDTTGPGGVILGGLGLEELGINLQDMLGNMLPR-RKRKRLVTVAEA 239 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L + E+D+LIDMD V ++Q VE GI+FLDE DKI R+S +G VSREGVQRD+ Sbjct: 240 RRILTQQEADKLIDMDDVAAIAVQRVEQEGIIFLDEIDKIAGRESSHGPDVSREGVQRDI 299 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEG++V TKYG + TDHILFIA+GAFHV++PADL+PE+QGRFP+RV LKSL + DF+ Sbjct: 300 LPIVEGTTVQTKYGPVKTDHILFIAAGAFHVAKPADLIPELQGRFPLRVELKSLGREDFQ 359 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT+ +++L+ QY L+ +GI L F+ D+I +AD+A +N+ DIGARRL T++E+ Sbjct: 360 RILTEPKNSLLKQYTALLAVDGIELQFSADAIAEIADIAYTVNTQGEDIGARRLHTILEK 419 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +L+D+ F A ++QE+ VVID YVR +GD TD+ +IL Sbjct: 420 ILQDLLFEAPEVQERKVVIDRTYVRKQLGDIMQRTDVQAYIL 461 >gi|156935935|ref|YP_001439851.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter sakazakii ATCC BAA-894] gi|166221479|sp|A7ML81|HSLU_ENTS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|156534189|gb|ABU79015.1| hypothetical protein ESA_03829 [Cronobacter sakazakii ATCC BAA-894] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+GE+ DKEI+I +A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R + +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM+T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASVTVQYKALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +T+ ID Sbjct: 362 EGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|331005991|ref|ZP_08329334.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma proteobacterium IMCC1989] gi|330420167|gb|EGG94490.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma proteobacterium IMCC1989] Length = 449 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/449 (50%), Positives = 314/449 (69%), Gaps = 19/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+EIV ELD++I+GQ+ AKRAVAIALRNRWRR Q+ +LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPKEIVHELDKHIVGQKSAKRAVAIALRNRWRRLQVSENLRPEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDLVD++I + RE +VR + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLVDMSIKLHREQAVKKVRHR 122 Query: 126 ASINAEERILDALV----------------GKTAT-SNTREVFRKKLRDGEISDKEIDIE 168 A AEERIL+AL+ G + S+TR++FRKKLR+G++ DKEIDIE Sbjct: 123 AEEIAEERILNALLRPARDADGTDNSKDDEGDSGNQSSTRQLFRKKLREGDLDDKEIDIE 182 Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 V+ + PG + L +FS M S +KK +++ +++ + +L DE+ +L+ Sbjct: 183 VSAAKVGVEIMAPPGMEDM-TDQLQNMFSS-MSSDKKKTVKLPIKQAFKQLCDDEAAKLV 240 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + D + +I+ E GIVF+DE DK+ R +G VSREGVQRDLLPL+EG +VSTK+ Sbjct: 241 NDDELKSQAIEAAEQNGIVFIDEIDKVAKRGDTSGGDVSREGVQRDLLPLIEGCTVSTKH 300 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I TDHILFI SGAFH+++P+DL+PE+QGR P+RV L++L+ DF ILT+ +++L Q Sbjct: 301 GMIKTDHILFITSGAFHLTKPSDLIPELQGRLPIRVELEALSPDDFERILTEPDASLTEQ 360 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 + LM TEG+ L F++D I +A+ A +N +IGARRL TV+ER+LEDISF + Sbjct: 361 QEALMATEGVALSFSKDGIRRIAETAWEVNERTENIGARRLHTVIERLLEDISFESGSNG 420 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+T+ IDAE+V +G+ + D+ FIL Sbjct: 421 EETINIDAEHVEKALGELVKDEDLSRFIL 449 >gi|56551143|ref|YP_161982.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis subsp. mobilis ZM4] gi|56542717|gb|AAV88871.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis subsp. mobilis ZM4] Length = 430 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/436 (52%), Positives = 316/436 (72%), Gaps = 7/436 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV LD +I+GQ++AKRAVA+A+RNRWRRQ LP L+DE+ PKNIL++GPT Sbjct: 1 MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R V Sbjct: 61 GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 RE+A A ER+L+ALVGK A+ TRE FR++ DG + ++E+++E+ + S +IP Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPS--MPVEIP 178 Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G G VG+++LS++ K R K+ R+ V++ + L+ +E+DR +D D + R ++ Sbjct: 179 GMGGQVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNA 235 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIAS Sbjct: 236 EANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIAS 294 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHV++P+DLLPE+QGR P+RV L +L + DF IL+ T ++L+ QY+ L+ TE ++L Sbjct: 295 GAFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLH 354 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 F ED I LA +A +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV Sbjct: 355 FEEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDE 414 Query: 422 HIGDFPSETDMYHFIL 437 + +D+ +IL Sbjct: 415 RLSGIAKNSDLSKYIL 430 >gi|7245635|pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245636|pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245637|pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245638|pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245733|pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245734|pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245735|pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245736|pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245737|pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli gi|7245738|pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 3 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 62 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 63 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 122 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 123 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 183 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 240 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 241 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 300 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 301 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 361 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 421 ADYVSKHLDALVADEDLSRFIL 442 >gi|11513635|pdb|1E94|E Chain E, Hslv-Hslu From E.Coli gi|11513636|pdb|1E94|F Chain F, Hslv-Hslu From E.Coli gi|17942585|pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942586|pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942591|pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942592|pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942603|pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942604|pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942605|pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942606|pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942611|pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu gi|17942612|pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hslu Length = 449 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 10 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 69 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 70 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 129 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 130 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 189 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 190 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 247 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 248 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 307 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 308 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 367 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 368 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 427 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 428 ADYVSKHLDALVADEDLSRFIL 449 >gi|123440504|ref|YP_001004498.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166221617|sp|A1JI08|HSLU_YERE8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|122087465|emb|CAL10246.1| ATP-binding heat shock protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPEETQEPSPTRQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+ + ++ D+ FIL Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443 >gi|241761498|ref|ZP_04759586.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753207|ref|YP_003226100.1| ATP-dependent protease ATP-binding subunit HslU [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241374405|gb|EER63902.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552570|gb|ACV75516.1| heat shock protein HslVU, ATPase subunit HslU [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 430 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/436 (52%), Positives = 316/436 (72%), Gaps = 7/436 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV LD +I+GQ++AKRAVA+A+RNRWRRQ LP L+DE+ PKNIL++GPT Sbjct: 1 MTDALTPKAIVEALDAHIVGQKEAKRAVAVAMRNRWRRQNLPEHLKDEVNPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 G GKT ISRRLA+LA APFIKVE TKFTE+GYVGR+VEQI RDLV+ A+ + RE +R V Sbjct: 61 GCGKTEISRRLAKLANAPFIKVEATKFTEVGYVGRDVEQIGRDLVEEAVRLEREKQRALV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 RE+A A ER+L+ALVGK A+ TRE FR++ DG + ++E+++E+ + S +IP Sbjct: 121 REKAEQAAMERLLEALVGKDASEATRETFRQRFLDGHLDEREVELELEEAPS--MPVEIP 178 Query: 183 G-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G G VG+++LS++ K R K+ R+ V++ + L+ +E+DR +D D + R ++ Sbjct: 179 GMGGQVGMISLSDMLGK---GHRTKRQRLPVRQAWRRLIDEEADRRLDKDEIGRIALSNA 235 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIAS Sbjct: 236 EANGIVFLDEVDKIAVSDVRGG-SVSREGVQRDLLPLLEGTTVTTKYGPMKTDHVLFIAS 294 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHV++P+DLLPE+QGR P+RV L +L + DF IL+ T ++L+ QY+ L+ TE ++L Sbjct: 295 GAFHVAKPSDLLPELQGRLPIRVELSALTEDDFIRILSSTRASLVEQYRALIGTENVVLH 354 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 F ED I LA +A +NS V +IGARRL TVME++LEDISF+A D++ + + ID +YV Sbjct: 355 FEEDGIRQLAHIAAEVNSEVENIGARRLSTVMEKLLEDISFNAEDMRGEEIKIDKKYVDE 414 Query: 422 HIGDFPSETDMYHFIL 437 + +D+ +IL Sbjct: 415 KLSGIAKNSDLSKYIL 430 >gi|254369290|ref|ZP_04985302.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp. holarctica FSC022] gi|157122240|gb|EDO66380.1| hypothetical protein FTAG_00251 [Francisella tularensis subsp. holarctica FSC022] Length = 455 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 234/457 (51%), Positives = 313/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK+++GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA T I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVTPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEGI L F ED+I +A++A +N V +IGARRL TVMER+LE I Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|237807244|ref|YP_002891684.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis DSM 9187] gi|259491383|sp|C4L9W9|HSLU_TOLAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|237499505|gb|ACQ92098.1| heat shock protein HslVU, ATPase subunit HslU [Tolumonas auensis DSM 9187] Length = 443 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ +AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQAEAKRAVAIALRNRWRRMQLSNELRQEVAPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+A+ ++RE ++VR +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDTIIRDLTDMALKMMREQEMEKVRFRA 123 Query: 127 SINAEERILDALVG----------KTAT-SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ K+ T ++TR++FRKKLR+GE+ DKEI+I+VA Sbjct: 124 HEAAEERVLDVLLPPARSNWGEAEKSETGTHTRQIFRKKLREGELDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF M +G K ++ V+ +L+ +E+ RL++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQN-MSAGNTHKRKLKVKDALKQLVEEEAGRLLNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DEFDKI R +G VSREGVQRDLLPL+EG +V+TK+G + TDH Sbjct: 242 KTIHAVENNGIVFIDEFDKICKRGESSGPDVSREGVQRDLLPLIEGCTVNTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV LK+L DF ILT+ ++L QY+ LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELKNLTVDDFERILTEPNASLTEQYQALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FT + I ++A+ A +N +IGARRL TV+E+++EDIS+ A+D + ID Sbjct: 362 EQVKIEFTAEGIRSIAEAAWQVNERTENIGARRLHTVLEKLMEDISYDAADNAGQLFSID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV ++G + D+ FIL Sbjct: 422 AEYVNRYLGALIEDEDLSRFIL 443 >gi|15804522|ref|NP_290562.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H7 EDL933] gi|15834112|ref|NP_312885.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. Sakai] gi|16131769|ref|NP_418366.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K-12 substr. MG1655] gi|24115225|ref|NP_709735.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri 2a str. 301] gi|30064776|ref|NP_838947.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri 2a str. 2457T] gi|74314431|ref|YP_312850.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sonnei Ss046] gi|82546280|ref|YP_410227.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii Sb227] gi|89110098|ref|AP_003878.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K-12 substr. W3110] gi|110807792|ref|YP_691312.1| ATP-dependent protease ATP-binding subunit HslU [Shigella flexneri 5 str. 8401] gi|157163406|ref|YP_001460724.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli HS] gi|168748769|ref|ZP_02773791.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4113] gi|168755617|ref|ZP_02780624.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4401] gi|168761683|ref|ZP_02786690.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4501] gi|168768235|ref|ZP_02793242.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4486] gi|168775231|ref|ZP_02800238.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4196] gi|168780850|ref|ZP_02805857.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4076] gi|168786789|ref|ZP_02811796.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC869] gi|168799486|ref|ZP_02824493.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC508] gi|170022058|ref|YP_001727012.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli ATCC 8739] gi|170083401|ref|YP_001732721.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K-12 substr. DH10B] gi|188494098|ref|ZP_03001368.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 53638] gi|193068001|ref|ZP_03048966.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E110019] gi|194433247|ref|ZP_03065528.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae 1012] gi|194438349|ref|ZP_03070440.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 101-1] gi|195937575|ref|ZP_03082957.1| ATP-dependent protease ATP-binding subunit [Escherichia coli O157:H7 str. EC4024] gi|208809015|ref|ZP_03251352.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4206] gi|208813147|ref|ZP_03254476.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4045] gi|208819441|ref|ZP_03259761.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4042] gi|217325487|ref|ZP_03441571.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. TW14588] gi|238902997|ref|YP_002928793.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli BW2952] gi|253775430|ref|YP_003038261.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039192|ref|ZP_04873242.1| heat shock protein hslU [Escherichia sp. 1_1_43] gi|254163881|ref|YP_003046989.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli B str. REL606] gi|254795933|ref|YP_003080770.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. TW14359] gi|256021576|ref|ZP_05435441.1| ATP-dependent protease ATP-binding subunit HslU [Shigella sp. D9] gi|256026031|ref|ZP_05439896.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia sp. 4_1_40B] gi|260857668|ref|YP_003231559.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O26:H11 str. 11368] gi|260870650|ref|YP_003237052.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O111:H- str. 11128] gi|261223565|ref|ZP_05937846.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli O157:H7 str. FRIK2000] gi|261257327|ref|ZP_05949860.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O157:H7 str. FRIK966] gi|291285346|ref|YP_003502164.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia coli O55:H7 str. CB9615] gi|293417436|ref|ZP_06660060.1| heat shock protein HslVU [Escherichia coli B185] gi|300906259|ref|ZP_07123968.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 84-1] gi|300919129|ref|ZP_07135666.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 115-1] gi|300931627|ref|ZP_07146937.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 187-1] gi|300948289|ref|ZP_07162404.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 116-1] gi|301024060|ref|ZP_07187775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 196-1] gi|301303409|ref|ZP_07209533.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 124-1] gi|307140629|ref|ZP_07499985.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli H736] gi|312971781|ref|ZP_07785955.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 1827-70] gi|331644669|ref|ZP_08345788.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H736] gi|331655629|ref|ZP_08356621.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli M718] gi|332282817|ref|ZP_08395230.1| heat shock protein HslVU [Shigella sp. D9] gi|62288339|sp|P0A6H5|HSLU_ECOLI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|62288340|sp|P0A6H6|HSLU_ECO57 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|62288341|sp|P0A6H7|HSLU_SHIFL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|123342247|sp|Q0SY58|HSLU_SHIF8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|123769360|sp|Q31U59|HSLU_SHIBS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|123773413|sp|Q3YV47|HSLU_SHISS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|167017226|sp|A8A737|HSLU_ECOHS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|189043910|sp|B1IVE8|HSLU_ECOLC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|229486075|sp|B1XB97|HSLU_ECODH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|259491371|sp|C5A098|HSLU_ECOBW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|13399751|pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|13399752|pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|13399757|pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|13399758|pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|13399759|pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|13399760|pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism gi|73535732|pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects gi|73535733|pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects gi|12518837|gb|AAG59126.1|AE005624_2 heat shock protein hslVU, ATPase subunit, homologous to chaperones [Escherichia coli O157:H7 str. EDL933] gi|305034|gb|AAB03063.1| matches PS00017: ATP_GTP_A; similar to Pasteurella haemolytica hypoth. protein ORF1; heat shock induced [Escherichia coli str. K-12 substr. MG1655] gi|1790366|gb|AAC76913.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K-12 substr. MG1655] gi|13364334|dbj|BAB38281.1| heat shock protein HslU [Escherichia coli O157:H7 str. Sakai] gi|24054510|gb|AAN45442.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str. 301] gi|30043036|gb|AAP18758.1| heat shock protein HslVU, ATPase subunit [Shigella flexneri 2a str. 2457T] gi|73857908|gb|AAZ90615.1| heat shock protein hslVU ATPase subunit [Shigella sonnei Ss046] gi|81247691|gb|ABB68399.1| heat shock protein hslVU, ATPase subunit [Shigella boydii Sb227] gi|85676129|dbj|BAE77379.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K12 substr. W3110] gi|110617340|gb|ABF06007.1| ATP-dependent protease ATP-binding subunit [Shigella flexneri 5 str. 8401] gi|157069086|gb|ABV08341.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli HS] gi|169756986|gb|ACA79685.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli ATCC 8739] gi|169891236|gb|ACB04943.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli str. K-12 substr. DH10B] gi|187769191|gb|EDU33035.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4196] gi|188016819|gb|EDU54941.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4113] gi|188489297|gb|EDU64400.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 53638] gi|189001486|gb|EDU70472.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4076] gi|189357218|gb|EDU75637.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4401] gi|189362747|gb|EDU81166.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4486] gi|189367913|gb|EDU86329.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4501] gi|189373351|gb|EDU91767.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC869] gi|189378023|gb|EDU96439.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC508] gi|192958621|gb|EDV89059.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli E110019] gi|194418531|gb|EDX34619.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae 1012] gi|194422786|gb|EDX38782.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 101-1] gi|208728816|gb|EDZ78417.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4206] gi|208734424|gb|EDZ83111.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4045] gi|208739564|gb|EDZ87246.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. EC4042] gi|209752248|gb|ACI74431.1| heat shock protein HslV [Escherichia coli] gi|209752250|gb|ACI74432.1| heat shock protein HslV [Escherichia coli] gi|209752252|gb|ACI74433.1| heat shock protein HslV [Escherichia coli] gi|209752254|gb|ACI74434.1| heat shock protein HslV [Escherichia coli] gi|209752256|gb|ACI74435.1| heat shock protein HslV [Escherichia coli] gi|217321708|gb|EEC30132.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli O157:H7 str. TW14588] gi|226838628|gb|EEH70657.1| heat shock protein hslU [Escherichia sp. 1_1_43] gi|238861792|gb|ACR63790.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli BW2952] gi|242379467|emb|CAQ34282.1| ATPase component of the HslVU protease, subunit of HslU hexamer and HslVU protease [Escherichia coli BL21(DE3)] gi|253326474|gb|ACT31076.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975782|gb|ACT41453.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str. REL606] gi|253979939|gb|ACT45609.1| ATP-dependent protease ATP-binding subunit [Escherichia coli BL21(DE3)] gi|254595333|gb|ACT74694.1| molecular chaperone and ATPase component of HslUV protease [Escherichia coli O157:H7 str. TW14359] gi|257756317|dbj|BAI27819.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O26:H11 str. 11368] gi|257767006|dbj|BAI38501.1| molecular chaperone and ATPase component HslU of HslUV protease [Escherichia coli O111:H- str. 11128] gi|260451232|gb|ACX41654.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli DH1] gi|281603325|gb|ADA76309.1| ATP-dependent hsl protease ATP-binding subunit hslU [Shigella flexneri 2002017] gi|290765219|gb|ADD59180.1| ATP-dependent hsl protease ATP-binding subunit hslU [Escherichia coli O55:H7 str. CB9615] gi|291430956|gb|EFF03952.1| heat shock protein HslVU [Escherichia coli B185] gi|299880564|gb|EFI88775.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 196-1] gi|300401940|gb|EFJ85478.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 84-1] gi|300413763|gb|EFJ97073.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 115-1] gi|300452190|gb|EFK15810.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 116-1] gi|300460591|gb|EFK24084.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 187-1] gi|300841363|gb|EFK69123.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 124-1] gi|309704356|emb|CBJ03705.1| ATP-dependent Hsl protease ATP-binding subunit (heat shock protein) [Escherichia coli ETEC H10407] gi|310334158|gb|EFQ00363.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 1827-70] gi|313648818|gb|EFS13257.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 2a str. 2457T] gi|315138497|dbj|BAJ45656.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli DH1] gi|315254304|gb|EFU34272.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 85-1] gi|315617726|gb|EFU98331.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 3431] gi|320175373|gb|EFW50476.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella dysenteriae CDC 74-1112] gi|320180702|gb|EFW55628.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella boydii ATCC 9905] gi|320184937|gb|EFW59721.1| ATP-dependent hsl protease ATP-binding subunit HslU [Shigella flexneri CDC 796-83] gi|320190969|gb|EFW65619.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. EC1212] gi|320639183|gb|EFX08814.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. G5101] gi|320644571|gb|EFX13628.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H- str. 493-89] gi|320649894|gb|EFX18406.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H- str. H 2687] gi|320655295|gb|EFX23241.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660922|gb|EFX28368.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O55:H7 str. USDA 5905] gi|320665987|gb|EFX33010.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. LSU-61] gi|323153992|gb|EFZ40201.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli EPECa14] gi|323167400|gb|EFZ53108.1| heat shock protein HslVU, ATPase subunit HslU [Shigella sonnei 53G] gi|323174331|gb|EFZ59957.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli LT-68] gi|323177952|gb|EFZ63536.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli 1180] gi|323934421|gb|EGB30834.1| heat shock protein HslVU [Escherichia coli E1520] gi|323939013|gb|EGB35231.1| heat shock protein HslVU [Escherichia coli E482] gi|323959300|gb|EGB54961.1| heat shock protein HslVU [Escherichia coli H489] gi|323969683|gb|EGB64967.1| heat shock protein HslVU [Escherichia coli TA007] gi|326338056|gb|EGD61886.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. 1044] gi|326342649|gb|EGD66422.1| ATP-dependent hsl protease ATP-binding subunit HslU [Escherichia coli O157:H7 str. 1125] gi|331036131|gb|EGI08367.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli H736] gi|331046730|gb|EGI18815.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli M718] gi|332084172|gb|EGI89377.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii 5216-82] gi|332085149|gb|EGI90327.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae 155-74] gi|332088251|gb|EGI93371.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii 3594-74] gi|332105169|gb|EGJ08515.1| heat shock protein HslVU [Shigella sp. D9] gi|332345927|gb|AEE59261.1| heat shock protein HslVU, ATPase subunit HslU [Escherichia coli UMNK88] gi|332751579|gb|EGJ81978.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 4343-70] gi|332751852|gb|EGJ82249.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri K-671] gi|332752607|gb|EGJ82993.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 2747-71] gi|332764529|gb|EGJ94761.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri 2930-71] gi|332997992|gb|EGK17598.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri VA-6] gi|332998605|gb|EGK18202.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri K-218] gi|333013855|gb|EGK33217.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri K-304] Length = 443 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|300721288|ref|YP_003710559.1| ATPase [Xenorhabdus nematophila ATCC 19061] gi|297627776|emb|CBJ88307.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Xenorhabdus nematophila ATCC 19061] Length = 443 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQDKAKRAVAIALRNRWRRMQLDENLRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T T S+TR+ FRKKLR+G++ DKEI+IEV+ Sbjct: 124 EELAEERILDVLLPPAKNNWGQTETQSEPSSTRQAFRKKLREGQLDDKEIEIEVSAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G R+K ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNMAGQ-RQKSRKLKIKDAFKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D I +A+ A +N T +IGARRL TV+ER++EDISF AS+ Q + V I+ Sbjct: 362 EGMNIEFTADGIRKIAEAAWQVNETTENIGARRLHTVLERMMEDISFDASERQGQFVEIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 ++YV+ ++ + + D+ FIL Sbjct: 422 SDYVKENLDELVANEDLSRFIL 443 >gi|285019333|ref|YP_003377044.1| molecular chaperone and ATPase component of hsluv protease [Xanthomonas albilineans GPE PC73] gi|283474551|emb|CBA17052.1| probable molecular chaperone and atpase component of hsluv protease protein [Xanthomonas albilineans] Length = 458 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/454 (50%), Positives = 315/454 (69%), Gaps = 24/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 + +PREIV ELDR+I+GQ DAKRAVAIALRNRWRR QLP +RDE+MPKNIL++GPTG Sbjct: 9 SATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLPDAMRDEVMPKNILMIGPTG 68 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA LA APF+KVE T+FTE+GYVG++VEQI+RDL D A+ + RE + VR Sbjct: 69 VGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIVRDLADTAVKLYREQAKTRVR 128 Query: 124 EQASINAEERILDALVGKTAT-----------------SNTREVFRKKLRDGEISDKEID 166 QA AEERILDAL+ + + S+TR FR+ L GE+ ++EI+ Sbjct: 129 TQAEERAEERILDALLPRRSVGIGFDPDAVRQEPSAQDSDTRSKFRRMLHAGELDEREIE 188 Query: 167 IEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 ++V + S DI PG +G L +FS +G G+ + R++++ P L+ +E+ Sbjct: 189 LDVPINVSMDI--MTPPGMEEMG-QQLRHMFSN-LGGGKSQSRRLTIKAARPLLIEEEAG 244 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 +L++ D V +I E +GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+ Sbjct: 245 KLVNEDDVRAAAIDACEQHGIVFIDEIDKVAKRGEAGASGGDVSREGVQRDLLPLVEGSN 304 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 VSTKYG++ TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L +L+K DF ILT+ ++ Sbjct: 305 VSTKYGTVRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELSALSKDDFIRILTEPKA 364 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI QY+ L+ TEG+ L F++D+I LA++A +N +IGARRL TV+ER+L+ +S+ Sbjct: 365 ALIKQYEALLLTEGVSLSFSDDAIVRLAEIAFLVNERQENIGARRLHTVLERLLDSLSYE 424 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A D ++V +DA YV + + + D+ +IL Sbjct: 425 APDRDGESVTVDAGYVDARLSELVQDPDLSRYIL 458 >gi|22124212|ref|NP_667635.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis KIM 10] gi|45439970|ref|NP_991509.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis biovar Microtus str. 91001] gi|51594455|ref|YP_068646.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pseudotuberculosis IP 32953] gi|108806253|ref|YP_650169.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis Antiqua] gi|108813908|ref|YP_649675.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis Nepal516] gi|145601043|ref|YP_001165119.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis Pestoides F] gi|150260792|ref|ZP_01917520.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125] gi|153950076|ref|YP_001399112.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pseudotuberculosis IP 31758] gi|162418383|ref|YP_001604748.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis Angola] gi|165928396|ref|ZP_02224228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. F1991016] gi|165936245|ref|ZP_02224814.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. IP275] gi|166011445|ref|ZP_02232343.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. E1979001] gi|166213726|ref|ZP_02239761.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. B42003004] gi|167402503|ref|ZP_02307957.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419213|ref|ZP_02310966.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425891|ref|ZP_02317644.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026311|ref|YP_001722816.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pseudotuberculosis YPIII] gi|186893443|ref|YP_001870555.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pseudotuberculosis PB1/+] gi|218927320|ref|YP_002345195.1| ATP-dependent protease ATP-binding subunit HslU [Yersinia pestis CO92] gi|229836219|ref|ZP_04456387.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis Pestoides A] gi|229839958|ref|ZP_04460117.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842040|ref|ZP_04462195.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis biovar Orientalis str. India 195] gi|229904434|ref|ZP_04519545.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis Nepal516] gi|270488704|ref|ZP_06205778.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM D27] gi|294502201|ref|YP_003566263.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis Z176003] gi|21759180|sp|Q8ZJJ5|HSLU_YERPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286788|sp|Q66G85|HSLU_YERPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123073081|sp|Q1CD55|HSLU_YERPN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123246016|sp|Q1CBE8|HSLU_YERPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221618|sp|A4TS84|HSLU_YERPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166879495|sp|A7FCY4|HSLU_YERP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238687319|sp|A9R6C7|HSLU_YERPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238688484|sp|B1JQ76|HSLU_YERPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238691341|sp|B2JZC5|HSLU_YERPB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21956973|gb|AAM83886.1|AE013628_9 heat shock protein, ATPase subunit [Yersinia pestis KIM 10] gi|45434825|gb|AAS60386.1| ATP-binding heat shock protein [Yersinia pestis biovar Microtus str. 91001] gi|51587737|emb|CAH19337.1| ATP-binding heat shock protein [Yersinia pseudotuberculosis IP 32953] gi|108777556|gb|ABG20075.1| ATP-binding heat shock protein [Yersinia pestis Nepal516] gi|108778166|gb|ABG12224.1| ATP-binding heat shock protein [Yersinia pestis Antiqua] gi|115345931|emb|CAL18793.1| ATP-binding heat shock protein [Yersinia pestis CO92] gi|145212739|gb|ABP42146.1| ATP-binding heat shock protein [Yersinia pestis Pestoides F] gi|149290200|gb|EDM40277.1| ATP-binding heat shock protein [Yersinia pestis CA88-4125] gi|152961571|gb|ABS49032.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pseudotuberculosis IP 31758] gi|162351198|gb|ABX85146.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis Angola] gi|165915859|gb|EDR34467.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. IP275] gi|165919578|gb|EDR36911.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. F1991016] gi|165989591|gb|EDR41892.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. E1979001] gi|166205128|gb|EDR49608.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. B42003004] gi|166963207|gb|EDR59228.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048119|gb|EDR59527.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055039|gb|EDR64838.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752845|gb|ACA70363.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pseudotuberculosis YPIII] gi|186696469|gb|ACC87098.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pseudotuberculosis PB1/+] gi|229678552|gb|EEO74657.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis Nepal516] gi|229690350|gb|EEO82404.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis biovar Orientalis str. India 195] gi|229696324|gb|EEO86371.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706667|gb|EEO92673.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis Pestoides A] gi|262360280|gb|ACY57001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis D106004] gi|262364227|gb|ACY60784.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis D182038] gi|270337208|gb|EFA47985.1| ATP-dependent protease HslVU, ATPase subunit [Yersinia pestis KIM D27] gi|294352660|gb|ADE63001.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis Z176003] gi|320013458|gb|ADV97029.1| molecular chaperone and ATPase component of HslUV protease [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 443 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEALKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTIEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESSGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443 >gi|238794365|ref|ZP_04637976.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia intermedia ATCC 29909] gi|238726266|gb|EEQ17809.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia intermedia ATCC 29909] Length = 443 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KVKIKDAFKLLIEEEGAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVAFTPEGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443 >gi|261254140|ref|ZP_05946713.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio orientalis CIP 102891] gi|260937531|gb|EEX93520.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio orientalis CIP 102891] Length = 444 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ ++SNTR+VFRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIEIDVAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +KK+ + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMK Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTE+ I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEEVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYV+ +GD + D+ FIL Sbjct: 422 DAEYVKAKLGDTIEDEDLSRFIL 444 >gi|308188608|ref|YP_003932739.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans C9-1] gi|308059118|gb|ADO11290.1| ATP-dependent hsl protease ATP-binding subunit hslU [Pantoea vagans C9-1] Length = 445 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/444 (50%), Positives = 312/444 (70%), Gaps = 15/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDSAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A ++ Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAASAPG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKEAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINT 293 D+I VE +GIVF+DE DKI R N G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQNAGGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 301 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF+ ILT+ +++ +QYK LM Sbjct: 302 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFQRILTEPNASITVQYKALM 361 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ ++FTE+ I +A+ A +N T +IGARRL TV+ER++EDIS+ ASD ++V Sbjct: 362 NTEGVNIEFTEEGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESVT 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA+YV H+ + ++ D+ FIL Sbjct: 422 IDADYVGKHLDELVADEDLSRFIL 445 >gi|238764479|ref|ZP_04625427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia kristensenii ATCC 33638] gi|238697291|gb|EEP90060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia kristensenii ATCC 33638] Length = 443 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ + L+ +E +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEAFKLLIEEEGAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+ + ++ D+ FIL Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443 >gi|307824296|ref|ZP_07654522.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter tundripaludum SV96] gi|307734676|gb|EFO05527.1| heat shock protein HslVU, ATPase subunit HslU [Methylobacter tundripaludum SV96] Length = 439 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/439 (51%), Positives = 308/439 (70%), Gaps = 9/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+EIVSELD++I+GQ +AKRAVAIALR+RWRRQQ+ LR+E+ PKNIL++GPTGVG Sbjct: 3 QMTPKEIVSELDKHIVGQANAKRAVAIALRDRWRRQQVDPALREEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDLVD A+ + R D+V + Sbjct: 63 KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLVDTAVKMTRTIEMDKVENK 122 Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A AE+RILD L+ + +TR+ RKKLR+G++ DKEI+I++ + Sbjct: 123 AFDAAEDRILDILLPRANGGMLSDTEESTRQKMRKKLREGDLDDKEIEIDMHLAPMGVEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +F +GSG+ + +M + K L +E+ +L++ D + ++ Sbjct: 183 MAPPGMEEM-TSQLQGMFQN-LGSGKTRSRKMKINKALKVLQDEEASKLVNEDDIRLRAV 240 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 + VE GIVFLDE DKI R G VSREGVQRDLLPLVEG++VSTKYGSI TDHILF Sbjct: 241 ESVEQNGIVFLDEIDKICKRSELGGGEVSREGVQRDLLPLVEGTTVSTKYGSIKTDHILF 300 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DL+PE+QGRFP+RV L +L+ DF ILT+ +++L QY L+ TEG+ Sbjct: 301 IASGAFHLTKPSDLIPELQGRFPIRVELDALSADDFVRILTEPDASLTEQYTALLGTEGV 360 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L F+ED I +A+ +N T +IGARRL TV+ER+LEDIS++A +L +VIDA Y Sbjct: 361 SLSFSEDGIKRIAEFGWQVNETTENIGARRLHTVLERLLEDISYNAPELIGNNIVIDAAY 420 Query: 419 VRLHIGDFPSETDMYHFIL 437 V H+ +F + D+ +IL Sbjct: 421 VNDHLAEFVEDEDLSRYIL 439 >gi|197287029|ref|YP_002152901.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis HI4320] gi|227354726|ref|ZP_03839144.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis ATCC 29906] gi|238690078|sp|B4F171|HSLU_PROMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|194684516|emb|CAR46300.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis HI4320] gi|227165169|gb|EEI49997.1| ATP-dependent Hsl protease, ATP-binding subunit [Proteus mirabilis ATCC 29906] Length = 446 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 224/445 (50%), Positives = 309/445 (69%), Gaps = 16/445 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREI SELDR+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRSQAIEKNRYRA 123 Query: 127 SINAEERILDALVGKTATS-------------NTREVFRKKLRDGEISDKEIDIEVADTS 173 AEERILD L+ + R+ FRKKLR+G++ DKEI+IE+A T Sbjct: 124 EEMAEERILDVLIPPAKNNWGVTESASSSEPSAARQAFRKKLREGQLDDKEIEIELAATP 183 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L +F + G +K + +M +++ + ++ +E+ +L++ + + Sbjct: 184 MGVEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KMKIKEAFKLIVEEEAAKLVNPEEL 241 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + Sbjct: 242 KQQAIDAVEQHGIVFIDEVDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVK 301 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY+ L Sbjct: 302 TDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYQAL 361 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 M TEG+ ++F++D I +A+ A +N T +IGARRL TV+ER++E+IS+ AS+ Q +T+ Sbjct: 362 MATEGVSINFSQDGIRKIAESAWRVNETTENIGARRLHTVLERLMEEISYDASERQGETI 421 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +IDAEYV+ H+ + ++ D+ FIL Sbjct: 422 LIDAEYVKQHLDELVADEDLSRFIL 446 >gi|89902204|ref|YP_524675.1| ATP-dependent protease ATP-binding subunit HslU [Rhodoferax ferrireducens T118] gi|89346941|gb|ABD71144.1| heat shock protein HslVU, ATPase subunit HslU [Rhodoferax ferrireducens T118] Length = 440 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/442 (48%), Positives = 315/442 (71%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++I+GQQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPQEIVFELDKHIVGQQQAKRAVAIALRNRWRRQQVEPGLRAEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+ R + +VR +A Sbjct: 61 TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLADIAVKQTRVAEMKKVRSRA 120 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+R+LD L+ S R+ FRKKLR+G+++D+EI+I++A ++ Sbjct: 121 EDAAEDRVLDVLIPPPRGDFGVVQNMEPESIARQTFRKKLREGQLADQEIEIDLAQSAPQ 180 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + MG +++ ++ + + L+ +E+ +L++ + + Sbjct: 181 LEIMGPPGMEEM-TEQLRGMFGQ-MGQQKRQTRKLKIPEALKLLVEEEAAKLVNEEEIRM 238 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++ M+E GIVF+DE DK+ +R GNG VSR+GVQRDLLPLVEG++VSTKYG + TDH Sbjct: 239 QALHMLEQNGIVFIDEIDKVTSRAEGNGAEVSRQGVQRDLLPLVEGTTVSTKYGMVKTDH 298 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T ++L+ QY+ L+ T Sbjct: 299 ILFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVQDFVAILTQTAASLVKQYQALLAT 358 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++F ++ I LA +A ++N +IGARRL TVMER+L+++SF A++L +T+ +D Sbjct: 359 ENVHIEFLDEGITRLAHIAFDVNERTENIGARRLSTVMERLLDEVSFDAANLGGQTIHVD 418 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ +IL Sbjct: 419 AAYVQARLGELSQDEDLSRYIL 440 >gi|332678290|gb|AEE87419.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella cf. novicida Fx1] Length = 455 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/457 (50%), Positives = 314/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKKIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK+++GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEG+ L F ED+I +A++A +N V +IGARRL TVMER+LE+I Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|254508172|ref|ZP_05120297.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio parahaemolyticus 16] gi|219548894|gb|EED25894.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio parahaemolyticus 16] Length = 444 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/443 (51%), Positives = 311/443 (70%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ ++SNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +KK+ + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMK Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTED I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YV+ +GD + D+ FIL Sbjct: 422 DADYVKAKLGDTIEDEDLSRFIL 444 >gi|238786105|ref|ZP_04630061.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia bercovieri ATCC 43970] gi|238798294|ref|ZP_04641778.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia mollaretii ATCC 43969] gi|238712982|gb|EEQ05038.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia bercovieri ATCC 43970] gi|238717841|gb|EEQ09673.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia mollaretii ATCC 43969] Length = 443 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAASPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKDAFKLLIEEEGAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFTREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESHGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+ + ++ D+ FIL Sbjct: 422 AAYVGKHLDELVADEDLSRFIL 443 >gi|323494457|ref|ZP_08099563.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio brasiliensis LMG 20546] gi|323311280|gb|EGA64438.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio brasiliensis LMG 20546] Length = 444 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ +SNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +KK+ + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMK Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTE+ I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKAGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYV+ +GD + D+ FIL Sbjct: 422 DAEYVKAKLGDTIEDEDLSRFIL 444 >gi|300954660|ref|ZP_07167101.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 175-1] gi|300318371|gb|EFJ68155.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 175-1] Length = 443 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLPDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|238789597|ref|ZP_04633381.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia frederiksenii ATCC 33641] gi|238722350|gb|EEQ14006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Yersinia frederiksenii ATCC 33641] Length = 443 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDETQEPSATRQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKDAFKLLIEEEGAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++F+ + I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ +++ ID Sbjct: 362 EGVTVEFSREGIRKIAEAAWQVNERTENIGARRLHTVLERLMEDISYDASESNGQSITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ + ++ D+ FIL Sbjct: 422 AEYVGKHLDELVADEDLSRFIL 443 >gi|212712511|ref|ZP_03320639.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM 30120] gi|212684727|gb|EEB44255.1| hypothetical protein PROVALCAL_03606 [Providencia alcalifaciens DSM 30120] Length = 444 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/443 (50%), Positives = 305/443 (68%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNEHLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+IEV+ Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEPVDEQSPARQAFRKKLREGQLDDKEIEIEVSAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE GIVF+DEFDKI R +G VSREGVQRDLLPL+EG ++STK+G + TD Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPNASLTEQYKALMA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT D I +A+ A +N + +IGARRL TV+ER++EDISF AS+ +++ I Sbjct: 362 TEGVSIEFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASERDGQSITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYVR H+ + ++ D+ FIL Sbjct: 422 DAEYVRQHLDELVADEDLSRFIL 444 >gi|300114765|ref|YP_003761340.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus watsonii C-113] gi|299540702|gb|ADJ29019.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus watsonii C-113] Length = 447 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/440 (52%), Positives = 308/440 (70%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV EL+++IIGQ AKRAVA+ALRNRWRR+Q+ +LR+E+ PKNIL++GPTGVGK Sbjct: 10 LTPRQIVQELNKHIIGQTAAKRAVAVALRNRWRRRQVNEELRNEITPKNILMIGPTGVGK 69 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE +VR QA Sbjct: 70 TEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQA 129 Query: 127 SINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ SNTR+ FRK LR+G++ D+EI+IE+A S + Sbjct: 130 EDRAEERILDALLPTARAAPHGSMDEQSNTRQKFRKMLREGKLDDREIEIELAAVSMGVE 189 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F + G+ R + R+ V++ + L +E+ +LI+ + + S Sbjct: 190 IMAPPGMEEM-TSQLQNMFQNLGGT-RTRTRRLRVREAFKLLTEEEAGKLINDEDLKAQS 247 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 ++ VE GIVFLDE DKI R +G VSREGVQRDLLPLVEGS+VSTKYG + TDHIL Sbjct: 248 LENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSTVSTKYGMVRTDHIL 307 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+++P+DL+PE+QGR P+RV L +L+ DF ILT+ ++L QY L+KTEG Sbjct: 308 FIASGAFHLAKPSDLIPEMQGRLPIRVELDALSVDDFVRILTEPNASLTAQYIALLKTEG 367 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 I L FTE+ I +A +A +N +IGARRL TVMER+LE +SF A + + V+IDA Sbjct: 368 ISLHFTEEGIARIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHASRKVIIDAA 427 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV + D + D+ +IL Sbjct: 428 YVDAQLADLAQDEDLSRYIL 447 >gi|260595965|ref|YP_003208536.1| ATP-dependent protease ATP-binding subunit HslU [Cronobacter turicensis z3032] gi|260215142|emb|CBA26936.1| ATP-dependent hsl protease ATP-binding subunit hslU [Cronobacter turicensis z3032] Length = 444 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 228/444 (51%), Positives = 308/444 (69%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRMQSIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S R+ FRKKLR+GE+ DKEI+I +A Sbjct: 124 EEMAEERILDALIPPAKNNWGQPEQQQEPSAARQAFRKKLREGELDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I+ VE +GIVF+DE DKI R GN G VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKR-GGNVSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ +++ +QYK LM Sbjct: 301 DHILFIASGAFQVASPSDLIPELQGRLPIRVELQALTADDFERILTEPNASVTVQYKALM 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +TEG+ ++FT+D I +A A +N T +IGARRL TV+ER++EDIS+ ASDL +T+ Sbjct: 361 ETEGVHIEFTDDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLGGQTIT 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA+YV H+ ++ D+ FIL Sbjct: 421 IDADYVSKHLDALVADEDLSRFIL 444 >gi|15604188|ref|NP_220703.1| ATP-dependent protease ATP-binding subunit HslU [Rickettsia prowazekii str. Madrid E] gi|11133244|sp|Q9ZDK8|HSLU_RICPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|3860880|emb|CAA14780.1| HEAT SHOCK PROTEIN HSLU (hslU) [Rickettsia prowazekii] gi|292571921|gb|ADE29836.1| Heat shock protein HslVU,ATPase subunit HslU [Rickettsia prowazekii Rp22] Length = 450 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/438 (49%), Positives = 317/438 (72%), Gaps = 5/438 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +IV+EL+R+I+GQ AK+AVAIALRNR+RR+++ +LR+E++PKNIL++G TGV Sbjct: 13 MGLTPSQIVNELNRFIVGQDKAKKAVAIALRNRYRRKRVEGNLRNEIVPKNILMIGSTGV 72 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L +PF K+E TKFTE+GYVGR+VE IIRDLV++A+N + + V Sbjct: 73 GKTEIARRLAKLTNSPFYKIEATKFTEVGYVGRDVESIIRDLVEIAVNTEKALAKIAVDI 132 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPG 183 A A ERILD+LVGKT++S TRE F+ K+ +GE+ D EI+I VADT+ F+IP Sbjct: 133 NAREKAIERILDSLVGKTSSSETREKFKAKVLNGELDDTEIEISVADTTPVGGGGFEIPC 192 Query: 184 --GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 GAS+G+LNL ++ + +G+ + K +M ++ ++ +ES++LID + + + +I + Sbjct: 193 IPGASMGVLNLGDMIGRALGNSKTKTKKMLIKDAMTVIIPEESEKLIDQEKIIQKAINLA 252 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 EN GIVF+DE DKI + + +SREGVQRDLLPL+EG++V+TKYG + TDHILFI Sbjct: 253 ENDGIVFIDEIDKIASTSNAGAKNAEISREGVQRDLLPLIEGTTVNTKYGPVKTDHILFI 312 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH+++P+DLLPE+QGR P+RV L L K D IL + E++LI QY L+ TE + Sbjct: 313 ASGAFHIAKPSDLLPELQGRLPIRVELNLLTKDDMIKILLEPETSLIKQYSALIGTEEVH 372 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+FT+ +I+ +AD A+ +N V DIGARRL T++E +LEDISF AS+++ K ++ID ++V Sbjct: 373 LEFTDAAIEKIADYAITVNLEVEDIGARRLHTILENLLEDISFEASEMKVKKIIIDDKFV 432 Query: 420 RLHIGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 433 ENQLSKIITNLDLAKFVL 450 >gi|83648621|ref|YP_437056.1| ATP-dependent protease ATP-binding subunit HslU [Hahella chejuensis KCTC 2396] gi|123753515|sp|Q2S9P3|HSLU_HAHCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|83636664|gb|ABC32631.1| heat shock protein HslVU, ATPase subunit HslU [Hahella chejuensis KCTC 2396] Length = 442 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELD++IIGQ AKRAVAIALRNRWRR Q+ LR+E+ PKNIL++GPTGVG Sbjct: 3 SMTPREIVQELDKHIIGQDSAKRAVAIALRNRWRRMQIDEGLREEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+AI ++RE +V + Sbjct: 63 KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLADMAIKLLREKEMTKVENR 122 Query: 126 ASINAEERILDALVGKTATSNT----------REVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILDAL+ + N+ R+VFRKKLR+G + DKEIDIE+ T Sbjct: 123 ALDAAEERILDALLPPARSFNSDAPVEKESAARQVFRKKLREGTLDDKEIDIEIKATPVG 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +FS + G RK+ RM V + ++ +E+ +L++ + + + Sbjct: 183 VEIMAPPGMEEM-TSQLQSMFSNMSGD-RKRTKRMKVAEAMKKVKDEEAAKLVNEEEIKQ 240 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +++ VE GIVF+DE DK+ R + VSREGVQRDLLPL+EG +VSTK+G + TDH Sbjct: 241 RALRAVEENGIVFIDEIDKVAKRSETSSADVSREGVQRDLLPLIEGCTVSTKFGMLKTDH 300 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+++P+DL+PE+QGR P+RV L +L+ SDF+ ILT+ ++L QY LMKT Sbjct: 301 ILFIASGAFHLAKPSDLIPELQGRLPIRVELDALSPSDFQRILTEPNASLTEQYVALMKT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + F+E +I +A++A +N +IGARRL TVME++LE++SF+A D + + Sbjct: 361 EGVDISFSEGAIQRIAEIAWKVNEKTENIGARRLHTVMEKLLEEVSFAAGDKIRDSFEVT 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV +G+ + D+ +IL Sbjct: 421 AEYVDKCLGELSEDEDLSRYIL 442 >gi|56476921|ref|YP_158510.1| ATP-dependent protease ATP-binding subunit HslU [Aromatoleum aromaticum EbN1] gi|62286724|sp|Q5P503|HSLU_AZOSE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56312964|emb|CAI07609.1| Heat shock protein chaperone [Aromatoleum aromaticum EbN1] Length = 442 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 310/442 (70%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++I+GQ AK+AVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL ++A+ RE VR++ Sbjct: 63 KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLAEIAVKDGRERAMKTVRDR 122 Query: 126 ASINAEERILDAL------VG----KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+R+LDAL VG + S+TR+ FRK+LR+GE+ DKEIDIEVA + Sbjct: 123 ALDAAEDRVLDALLPAARPVGLNEPEPVDSSTRQKFRKRLREGELDDKEIDIEVAAQAMT 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 F PG + + +F +G G+KK +M + + L +E+ RLI+ + V Sbjct: 183 AEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKVRKMKIGEALKALTDEEAARLINDEEVKA 240 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++++ VE GIVFLDE DK+ +R G G VSR+GVQRDLLPLVEG+++STKYG I TDH Sbjct: 241 EAVRAVEQNGIVFLDEIDKVASRSEGQGADVSRQGVQRDLLPLVEGTTISTKYGMIKTDH 300 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+++P+DL+PE+QGR P+RV L+SL+ DF+ ILT T++ L+ QY+ L+ T Sbjct: 301 ILFIASGAFHLAKPSDLIPELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLAT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 +G+ L+FT+D I LA++A +N +IGARRL TVME++LE+ISF A + +++D Sbjct: 361 DGVTLEFTDDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRIGLDKLLVD 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + D+ ++L Sbjct: 421 APYVDARLEILAQREDLARYVL 442 >gi|32035737|ref|ZP_00135613.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209199|ref|YP_001054424.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus pleuropneumoniae L20] gi|190151065|ref|YP_001969590.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249978|ref|ZP_07336180.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|166221456|sp|A3N333|HSLU_ACTP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238692357|sp|B3GYW2|HSLU_ACTP7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|126097991|gb|ABN74819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189916196|gb|ACE62448.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651041|gb|EFL81195.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 440 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV+ + D D+ FIL Sbjct: 418 DEKYVQAALNDVVENEDLSRFIL 440 >gi|149189185|ref|ZP_01867472.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1] gi|148836939|gb|EDL53889.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1] Length = 444 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVSPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVTFRA 123 Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ ++SNTR+VFRKKLR+G++ DKEIDIE A Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDESSSNTRQVFRKKLREGKLDDKEIDIETAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F +G KKK ++ ++ + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQSMFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMK Sbjct: 302 HILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYIALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTED I +AD A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEEVDVEFTEDGIQQIADAAWTVNETTENIGARRLHTVMERLMDEISFDATDKPGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D+ YV+ +G+F + D+ FIL Sbjct: 422 DSGYVKSKLGEFVEDEDLSRFIL 444 >gi|294340809|emb|CAZ89204.1| ATP-dependent hsl protease ATP-binding subunit hslU (Heat shock protein hslU) [Thiomonas sp. 3As] Length = 440 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/442 (50%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELDR++IGQ AK+AVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDRFVIGQAKAKQAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDL++ A+ + RE+ + R +A Sbjct: 61 TEIARRLAKLADAPFIKVEATKFTEVGYVGRDVDTIIRDLMEAAVKLARETAMRQQRTRA 120 Query: 127 SINAEERILDALVGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ A S+ TR++ RK+LR+G++ +KEI+I++A + Sbjct: 121 EDRAEDRILDVLLPAPADSSGHTPSVTENNPTRQMLRKRLREGQLDNKEIEIDLAVHPAS 180 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + + +F+ +G R+K +++V++ L+ +E+ +L++ D + Sbjct: 181 VDIMGPPGMEDM-TEQIRSMFAN-LGQTRRKTRKVTVREAQKLLIDEEAAKLVNEDEIKA 238 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +++ VE GIVFLDE DK+ +R G VSR+GVQRDLLPLVEG++VSTKYG + TDH Sbjct: 239 GALRAVEQNGIVFLDEIDKVASRSDTQGADVSRQGVQRDLLPLVEGTTVSTKYGMVRTDH 298 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL+ +DF ILT T+++L QY L+ T Sbjct: 299 ILFIASGAFHVAKPSDLIPELQGRFPIRVELESLSVADFEAILTSTDASLTKQYAALLAT 358 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 +G+ ++FT D I +A+VA +N +IGARRL TVMER+LE++SF A Q TV +D Sbjct: 359 DGVQVEFTADGIRRMAEVAFQVNEKTENIGARRLHTVMERLLEEVSFHADGAQHSTVKVD 418 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A V +GD + D+ ++L Sbjct: 419 AAMVNERLGDIARDEDLSRYVL 440 >gi|85060147|ref|YP_455849.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius str. 'morsitans'] gi|123766389|sp|Q2NQY1|HSLU_SODGM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|84780667|dbj|BAE75444.1| heat shock protein [Sodalis glossinidius str. 'morsitans'] Length = 443 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YI+GQ +AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDGYIVGQHNAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEQNRFRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LD L+ S+ R+ FRKKLR+G++ +KEI+I +A Sbjct: 124 EELAEERVLDVLIPPAKNNWGQPEESGEPSSARQNFRKKLREGQLDEKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFKNLAGQKQKPR-KIKIKEAMKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI RD +G+ VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 KAIEAVEQHGIVFIDEIDKICKRDEVSGLDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELEALTTEDFERILTEPSASLTTQYIALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FTED I +A+ A +N +IGARRL TV+ER++EDIS+ AS+ KT+ ID Sbjct: 362 EGVSITFTEDGIKRIAEAAWQVNECTENIGARRLHTVLERLMEDISYDASEWNGKTISID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ + S+ D+ FIL Sbjct: 422 ADYVHGHLDELVSDEDLSRFIL 443 >gi|208779388|ref|ZP_03246734.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida FTG] gi|254372953|ref|ZP_04988442.1| hypothetical protein FTCG_00524 [Francisella tularensis subsp. novicida GA99-3549] gi|254374404|ref|ZP_04989886.1| ATP-dependent protease [Francisella novicida GA99-3548] gi|151570680|gb|EDN36334.1| hypothetical protein FTCG_00524 [Francisella novicida GA99-3549] gi|151572124|gb|EDN37778.1| ATP-dependent protease [Francisella novicida GA99-3548] gi|208745188|gb|EDZ91486.1| heat shock protein HslVU, ATPase subunit HslU [Francisella novicida FTG] Length = 455 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/457 (50%), Positives = 313/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK+++GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEG+ L F ED+I +A++A +N V +IGARRL TVMER+LE+I Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|323144075|ref|ZP_08078718.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei YIT 12066] gi|322416151|gb|EFY06842.1| ATP-dependent protease HslVU, ATPase subunit [Succinatimonas hippei YIT 12066] Length = 442 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/443 (51%), Positives = 312/443 (70%), Gaps = 16/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELDR+IIGQ++AK++VAIALRNRWRR Q+ LR E+ PKNIL++GPTGVGK Sbjct: 4 LTPREIVSELDRFIIGQKEAKKSVAIALRNRWRRMQIDPKLRGEIFPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA LA APFIKVE TK+TE+GYVG+ V+ IIRDLVDV + +V+E + R +A Sbjct: 64 TEIARRLASLANAPFIKVEATKYTEVGYVGKEVDSIIRDLVDVGMKLVKEQAFKKNRVRA 123 Query: 127 SINAEERILDALV--------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 AEERILDAL+ + + TR++FRKKLR+ E+ D+EI+I VADT + Sbjct: 124 EDAAEERILDALLPPADNTPESEKENNPTRQIFRKKLREHELDDREIEIRVADTGP---S 180 Query: 179 FDIPGG-ASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 F+I GG A++ +N L LF M + R +M ++ + EL+ +E+++L D + Sbjct: 181 FNIIGGNAAIEEVNNQLQSLFDN-MNANRTVVRKMKIKDAFKELVMEEAEKLTKKDDLKT 239 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTD 294 ++I + EN GIVF+DE DKI +D G VSR+GVQRDLLPL+EG VSTKYG + TD Sbjct: 240 EAINLTENNGIVFIDEIDKICGQDLNGSRGEVSRQGVQRDLLPLIEGCQVSTKYGMVRTD 299 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF +S+P+DL+PE+QGR P+RV LK+L DF IL + ++L QY+ L+ Sbjct: 300 HILFIASGAFQMSKPSDLIPELQGRLPIRVELKALTSEDFERILKEPHTSLTKQYEMLLA 359 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D+I +A+ A +N +IGARRL T+ME++LE +SF A D + VVI Sbjct: 360 TEGVTIEFTDDAIKRIAEDAFTVNERTENIGARRLHTLMEKLLESVSFEAPDHAGQKVVI 419 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYV H+G+ D+ +IL Sbjct: 420 DAEYVDDHLGELVQNEDLSRYIL 442 >gi|268593396|ref|ZP_06127617.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri DSM 1131] gi|291311093|gb|EFE51546.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rettgeri DSM 1131] Length = 444 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/443 (51%), Positives = 306/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQNKAKRSVAIALRNRWRRMQLNEVLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+IEVA + Sbjct: 124 EEMAEERILDVLIPPAKNNWGQSEPTDEHSPARQAFRKKLREGQLDDKEIEIEVAASPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE GIVF+DEFDKI R +G VSREGVQRDLLPL+EG ++STK+G + TD Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFVRILTEPNASLTEQYKALMA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT D I +A+ A +N + +IGARRL TV+ER++EDISF ASD +T+ I Sbjct: 362 TEGVNIEFTTDGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASDRNGQTIQI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YVR H+ + ++ D+ FIL Sbjct: 422 DADYVRQHLDELVADEDLSRFIL 444 >gi|62260988|gb|AAX77951.1| unknown protein [synthetic construct] Length = 490 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 233/459 (50%), Positives = 314/459 (68%), Gaps = 24/459 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 +++T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++G Sbjct: 25 LEMTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIG 84 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE ++ Sbjct: 85 PTGVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKE 144 Query: 121 EVREQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDG 158 +V E+A+ AE+RILD L+ TS TRE+FRKK+++G Sbjct: 145 KVTEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNG 204 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218 E+ DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 205 ELDDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKL 262 Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPL Sbjct: 263 AQDEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPL 322 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL Sbjct: 323 VEGSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRIL 382 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + + +++ QY LMKTEGI L F ED+I +A++A +N V +IGARRL TVMER+LE Sbjct: 383 REPDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLE 442 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ISF A +L EK + I +YV +G+ D+ +IL Sbjct: 443 KISFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 481 >gi|307246664|ref|ZP_07528734.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248792|ref|ZP_07530805.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253408|ref|ZP_07535279.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255649|ref|ZP_07537453.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260100|ref|ZP_07541811.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262228|ref|ZP_07543878.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264429|ref|ZP_07546015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306852364|gb|EFM84599.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854719|gb|EFM86909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859087|gb|EFM91129.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861326|gb|EFM93316.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865834|gb|EFM97711.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868102|gb|EFM99928.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870245|gb|EFN02003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 438 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R +A Sbjct: 61 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120 Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LF M + KK +M ++ ++ +E+ +L++ + + + Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TDHI Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMKTE Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VID Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV+ + D D+ FIL Sbjct: 418 KYVQAALNDVVENEDLSRFIL 438 >gi|227113220|ref|ZP_03826876.1| ATP-dependent protease ATP-binding subunit [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 443 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 309/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAV+IALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ G++ + S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQSESTQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KVKIKDAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TVMER++ED+S+ AS++ ++V ID Sbjct: 362 EGVNISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|284008945|emb|CBA75815.1| ATP-dependent Hsl protease, ATP-binding subunit [Arsenophonus nasoniae] Length = 455 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 302/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ELD +IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 16 MTPREIVNELDNHIIGQDKAKRSVAIALRNRWRRMQLDEALRQEVTPKNILMIGPTGVGK 75 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 76 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 135 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+GE+ DKEI+IEVA T Sbjct: 136 EELAEERILDVLLPPAKNNWGQPDPHVEPSTARQSFRKKLREGELDDKEIEIEVATTPVG 195 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G K + +M +++ + L+ +E+ +L++ + + + Sbjct: 196 VEIMAPPGMEEM-TSQLQSMFQNLAGQKHKPR-KMKIKEAFKTLIEEEAAKLVNPEELKQ 253 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 254 QAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 313 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L +QYK LM T Sbjct: 314 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTAEDFNRILTEPNASLTIQYKALMAT 373 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT + I +A A +N +IGARRL TV+ER++EDISF AS+ + + ID Sbjct: 374 EGLNIEFTPEGIGKIAQAAWQVNEKTENIGARRLHTVLERLMEDISFDASERNGQNIKID 433 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ + ++ D+ FIL Sbjct: 434 ADYVAKHLDELVADEDLSRFIL 455 >gi|262273450|ref|ZP_06051264.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia hollisae CIP 101886] gi|262222428|gb|EEY73739.1| ATP-dependent hsl protease ATP-binding subunit HslU [Grimontia hollisae CIP 101886] Length = 444 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 231/442 (52%), Positives = 306/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELDR+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDRHIIGQNKAKRAVAIALRNRWRRMQLNEELRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-------GKT----ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G++ A S TR+ FRKK+R+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLLPPPRDAWGQSDEPKADSATRQSFRKKIREGKLDDKEIEINLAAPQMS 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G KK +M ++ +E+ +L++ + + Sbjct: 184 MEIMAPPGMEEM-TSQLQSMFQNLGGGTTSKKRKMKLKDALKAATEEEAAKLVNHEELKE 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 QAIAAVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L+ SDF+ ILT+ ++L QY LM T Sbjct: 303 ILFIASGAFQVASPSDLIPELQGRLPIRVELEALSASDFKRILTEPNASLTEQYIALMGT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L FTED I+ +A+ A +N +IGARRL TVMER++++ISFSAS+ ++ ID Sbjct: 363 EDVNLTFTEDGIEEIANAAWRVNEKTENIGARRLHTVMERLVDEISFSASERGGESFEID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYVR + + + D+ FIL Sbjct: 423 AEYVRNCLEELVDDEDLSRFIL 444 >gi|317050064|ref|YP_004117712.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b] gi|316951681|gb|ADU71156.1| heat shock protein HslVU, ATPase subunit HslU [Pantoea sp. At-9b] Length = 443 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDGAKRAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ + +A Sbjct: 64 TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRIQAIEKNKYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEHTAEPSAARQSFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDALKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIEAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT+D I +A+ A +N T +IGARRL TV+ER++EDIS+ ASD +++ ID Sbjct: 362 EGVNVDFTDDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRNGESITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV H+ ++ D+ FIL Sbjct: 422 AEYVGKHLDQLVADEDLSRFIL 443 >gi|301645122|ref|ZP_07245080.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 146-1] gi|301076549|gb|EFK91355.1| ATP-dependent protease HslVU, ATPase subunit [Escherichia coli MS 146-1] Length = 443 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQGNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|56707807|ref|YP_169703.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. tularensis SCHU S4] gi|89256313|ref|YP_513675.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. holarctica LVS] gi|110670278|ref|YP_666835.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. tularensis FSC198] gi|115314758|ref|YP_763481.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. holarctica OSU18] gi|134302010|ref|YP_001121979.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. tularensis WY96-3418] gi|156502382|ref|YP_001428447.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010172|ref|ZP_02275103.1| heat shock protein HslVU, ATPase subunit HslU [Francisella tularensis subsp. holarctica FSC200] gi|187931847|ref|YP_001891832.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. mediasiatica FSC147] gi|254367645|ref|ZP_04983666.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. holarctica 257] gi|290953147|ref|ZP_06557768.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. holarctica URFT1] gi|295313675|ref|ZP_06804259.1| ATP-dependent protease ATP-binding subunit HslU [Francisella tularensis subsp. holarctica URFT1] gi|62286722|sp|Q5NGY9|HSLU_FRATT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|122325223|sp|Q0BM40|HSLU_FRATO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|122500777|sp|Q2A3M7|HSLU_FRATH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123359528|sp|Q14IE1|HSLU_FRAT1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221480|sp|A7NBY8|HSLU_FRATF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221482|sp|A4IY57|HSLU_FRATW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238691570|sp|B2SH45|HSLU_FRATM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56604299|emb|CAG45320.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144144|emb|CAJ79403.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis subsp. holarctica LVS] gi|110320611|emb|CAL08703.1| ATP-dependent protease, ATP-binding subunit [Francisella tularensis subsp. tularensis FSC198] gi|115129657|gb|ABI82844.1| T01 family HslU component of HslUV peptidase (ClpY) [Francisella tularensis subsp. holarctica OSU18] gi|134049787|gb|ABO46858.1| heat shock protein HslVU, ATPase subunit HslU [Francisella tularensis subsp. tularensis WY96-3418] gi|134253456|gb|EBA52550.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. holarctica 257] gi|156252985|gb|ABU61491.1| heat shock protein HslVU, ATPase subunit HslU [Francisella tularensis subsp. holarctica FTNF002-00] gi|187712756|gb|ACD31053.1| ATP-dependent protease HslVU, ATPase subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|282158981|gb|ADA78372.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis NE061598] Length = 455 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 233/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK+++GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEGI L F ED+I +A++A +N V +IGARRL TVMER+LE I Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|309972350|gb|ADO95551.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2846] Length = 443 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/441 (53%), Positives = 307/441 (69%), Gaps = 11/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL V ++TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESNDNNSTRQTFRKKLREGQLDDKEIEIDVSAGVSMG 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQK 242 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 243 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 302 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM TE Sbjct: 303 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 362 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV IDA Sbjct: 363 GVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 422 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV +G+ D+ FIL Sbjct: 423 TYVADALGEVVENEDLSRFIL 443 >gi|224456876|ref|ZP_03665349.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370304|ref|ZP_04986309.1| ATP-dependent protease HslVU [Francisella tularensis subsp. tularensis FSC033] gi|254874621|ref|ZP_05247331.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|151568547|gb|EDN34201.1| ATP-dependent protease HslVU [Francisella tularensis subsp. tularensis FSC033] gi|254840620|gb|EET19056.1| hslU, ATP-dependent protease, ATP-binding subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 455 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 233/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK+++GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALKAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGVIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEGI L F ED+I +A++A +N V +IGARRL TVMER+LE I Sbjct: 359 PDCSILKQYIALMKTEGIDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEKI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|82778893|ref|YP_405242.1| ATP-dependent protease ATP-binding subunit HslU [Shigella dysenteriae Sd197] gi|309783874|ref|ZP_07678519.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae 1617] gi|123728481|sp|Q32AA4|HSLU_SHIDS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|81243041|gb|ABB63751.1| heat shock protein hslVU, ATPase subunit [Shigella dysenteriae Sd197] gi|308928245|gb|EFP73707.1| heat shock protein HslVU, ATPase subunit HslU [Shigella dysenteriae 1617] gi|332998439|gb|EGK18037.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri K-272] gi|333014132|gb|EGK33489.1| heat shock protein HslVU, ATPase subunit HslU [Shigella flexneri K-227] Length = 443 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA AP IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPLIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ ++ D+ FIL Sbjct: 422 ADYVSKHLDALVADEDLSRFIL 443 >gi|118497588|ref|YP_898638.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. novicida U112] gi|195536286|ref|ZP_03079293.1| heat shock protein HslVU, ATPase subunit HslU [Francisella tularensis subsp. novicida FTE] gi|166221481|sp|A0Q6L9|HSLU_FRATN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|118423494|gb|ABK89884.1| ATP-dependent protease HslVU, ATPase subunit [Francisella novicida U112] gi|194372763|gb|EDX27474.1| heat shock protein HslVU, ATPase subunit HslU [Francisella tularensis subsp. novicida FTE] Length = 455 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE +++V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKEKV 120 Query: 123 REQASINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ TS TRE+FRKK++ GE+ Sbjct: 121 TEKAARLAEDRILDVLIPPARTSESKVGFANEPAEDAASKKEKENKTREIFRKKIQKGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +L++ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLVNEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEG+ L F ED+I +A++A +N V +IGARRL TVMER+LE+I Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYKVNEEVENIGARRLHTVMERLLEEI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L EK + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELVEKNINITTDYVNEKLGNLVKNKDLSQYIL 455 >gi|237747301|ref|ZP_04577781.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] gi|229378652|gb|EEO28743.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] Length = 443 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/446 (50%), Positives = 311/446 (69%), Gaps = 16/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD++++GQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNLTPQEIVVELDKHVVGQSKAKRAVAVALRNRWRRQQVSEPLRHEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I RE +VR Sbjct: 61 GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTREVEMKKVRS 120 Query: 125 QASINAEERILDALVGK-------------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+R+L+ L+ ++ NTR+VFRKKLR+G + DKEI+IEVAD Sbjct: 121 RAVDAAEDRVLNILIPPPRDFGFGSNEQPTSSGDNTRQVFRKKLREGSLDDKEIEIEVAD 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 ++ + PG + + +FS +G GRKK ++ ++ ++ +E+ +LI+ D Sbjct: 181 SAPHMEIMAPPGMEEM-TEQIKSMFSG-LGGGRKKNRKVKIRDAIKLIIEEEAAKLINED 238 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + + +I VE GIVFLDE DKI +R +G VSR GVQRDLLPLVEG++V+TKYG I Sbjct: 239 ELRQKAIANVEQNGIVFLDEIDKIASRSEISGADVSRAGVQRDLLPLVEGTTVNTKYGMI 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAF +++P+DL+PE+QGRFP+RV L+SL+ DF ILT TE++LI QYK Sbjct: 299 KTDHILFIASGAFQLAKPSDLIPELQGRFPIRVELESLSIEDFEQILTSTEASLISQYKA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TEG+ L+F E++I LA+++ +N +IGARRL TVMER+LE+ISF+A + Sbjct: 359 LLATEGMQLEFNEEAIRRLAEISYTVNERTENIGARRLYTVMERLLEEISFTAVNYH-GV 417 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 ID YV + + D+ ++L Sbjct: 418 QTIDKNYVNERLEALSANEDLSRYVL 443 >gi|1074211|pir||D64072 probable heat shock protein HI0497 - Haemophilus influenzae (strain Rd KW20) Length = 466 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GP Sbjct: 21 KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 80 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + Sbjct: 81 TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 140 Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170 R +A AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ Sbjct: 141 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 200 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S P G L LF +GS + KK +M ++ L+ DE+ +LI+ Sbjct: 201 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 259 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G Sbjct: 260 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 319 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK Sbjct: 320 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 379 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 LM TEG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ + Sbjct: 380 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 439 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV +G+ D+ FIL Sbjct: 440 TVNIDAAYVADALGEVVENEDLSRFIL 466 >gi|227327579|ref|ZP_03831603.1| ATP-dependent protease ATP-binding subunit [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253686572|ref|YP_003015762.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491376|sp|C6DHM6|HSLU_PECCP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|251753150|gb|ACT11226.1| heat shock protein HslVU, ATPase subunit HslU [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 443 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAV+IALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQHKAKRAVSIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRLQSIEKNRFRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ G+ + S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQAESTPEPSAARQAFRKKLREGQLDDKEIEIDLAAAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKAR-KIKIKDAFKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TVMER++ED+S+ AS++ ++V ID Sbjct: 362 EGVDISFTADGIRRIAEAAWQVNESTENIGARRLHTVMERLIEDVSYDASEMNGQSVTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YVR H+ + ++ D+ FIL Sbjct: 422 ADYVRNHLDELVADEDLSRFIL 443 >gi|145632762|ref|ZP_01788496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145634507|ref|ZP_01790216.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] gi|144986957|gb|EDJ93509.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145268052|gb|EDK08047.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] Length = 444 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 308/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQVDAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGMSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIEFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|260580440|ref|ZP_05848268.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus influenzae RdAW] gi|260092782|gb|EEW76717.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus influenzae RdAW] Length = 454 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/447 (52%), Positives = 308/447 (68%), Gaps = 12/447 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GP Sbjct: 9 KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + Sbjct: 69 TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128 Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170 R +A AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S P G L LF +GS + KK +M ++ L+ DE+ +LI+ Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINP 247 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 LM TEG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ + Sbjct: 368 ALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV +G+ D+ FIL Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454 >gi|217969220|ref|YP_002354454.1| ATP-dependent protease ATP-binding subunit HslU [Thauera sp. MZ1T] gi|217506547|gb|ACK53558.1| heat shock protein HslVU, ATPase subunit HslU [Thauera sp. MZ1T] Length = 445 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/445 (52%), Positives = 312/445 (70%), Gaps = 15/445 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++I+GQ AK+AVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPPEIVSELDKHIVGQDKAKKAVAIALRNRWRRAQVEEPLRSEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+ RE VR++ Sbjct: 63 KTEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDLMEIAVKDGRERAMKSVRDR 122 Query: 126 ASINAEERILDAL------VGKTAT------SNTREVFRKKLRDGEISDKEIDIEVADTS 173 A AE+R+LDAL VG A S+TR+ FRKKLR+GE+ DKEI+IEVA S Sbjct: 123 ALDAAEDRVLDALLPPARPVGFNAEPEPAQDSSTRQKFRKKLREGELDDKEIEIEVAAPS 182 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 F PG + + +F +G G+KK+ ++ +++ L +E+ RLI+ + V Sbjct: 183 MQAEIFAPPGMEEL-TQQIQGMFQN-LGGGKKKQRKLQIREAMKLLADEEAARLINDEEV 240 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++++ VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG+++STKYG I T Sbjct: 241 KLEAVRAVEQNGIVFLDEVDKIAARSDVQGADVSRQGVQRDLLPLVEGTTISTKYGMIKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T++ L QY+ L+ Sbjct: 301 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFARILTSTDACLTRQYEALL 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS-DLQEKTV 412 T+G+ L+F +D I LA++A +N +IGARRL TVME++LE++SF A E+TV Sbjct: 361 ATDGVKLEFADDGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGRSSAEQTV 420 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 V+DA YV + D+ ++L Sbjct: 421 VVDAAYVDSRLVMLAQREDLARYVL 445 >gi|119470416|ref|ZP_01613144.1| ATP-dependent protease ATP-binding subunit [Alteromonadales bacterium TW-7] gi|119446341|gb|EAW27617.1| ATP-dependent protease ATP-binding subunit [Alteromonadales bacterium TW-7] Length = 442 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/441 (49%), Positives = 314/441 (71%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++IIGQ +AK+AVAIALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDQHIIGQANAKKAVAIALRNRWRRMQLNDDLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE + + + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVEVSIKMTREQQTKKFKHRA 123 Query: 127 SINAEERILDALV-------GKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+RILDAL+ G+T S+TR+ FRKKLR+G++ DKEI+I++A ++ Sbjct: 124 EEAAEDRILDALLPPVKDQYGETQRDENSSTRQTFRKKLREGQLDDKEIEIDLAQVQPNV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F MG ++ K ++ +++ + L +E+ +L++ + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+V+TK+G + TDH+ Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDHM 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+D++PE+QGR P+RV L++L +DF+ ILT+ ++L Q +EL+KTE Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTANDFKRILTEPHASLTEQQRELLKTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 + + +++D+I+ +A A +N +IGARRL TVME+++E+IS+ AS+ +VVIDA Sbjct: 362 QVDVQYSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGSSVVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV H+G + D+ FIL Sbjct: 422 AYVEKHLGALVEDEDLSRFIL 442 >gi|261346864|ref|ZP_05974508.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rustigianii DSM 4541] gi|282565044|gb|EFB70579.1| ATP-dependent protease HslVU, ATPase subunit [Providencia rustigianii DSM 4541] Length = 444 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 225/443 (50%), Positives = 304/443 (68%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNHIIGQHKAKRSVAIALRNRWRRMQLNETLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+IEV+ Sbjct: 124 EEMAEERILDVLIPPAKNNWGQAEPVDEPSPARQAFRKKLREGQLDDKEIEIEVSAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + +M +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKQKPR-KMKIKEAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE GIVF+DEFDKI R +G VSREGVQRDLLPL+EG ++STK+G + TD Sbjct: 242 QAIEAVEQNGIVFIDEFDKICKRGGQSSGPDVSREGVQRDLLPLIEGCTISTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF VS P+DL+PE+QGR P+RV L+ L DF ILT+ S+L QYK LM Sbjct: 302 HILFIASGAFQVSSPSDLIPELQGRLPIRVELQPLTTEDFERILTEPNSSLTEQYKALMA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ +DFT D I +A+ A +N + +IGARRL TV+ER++EDISF AS+ + +++ I Sbjct: 362 TEGVNIDFTADGIRKIAESAWQVNESTENIGARRLHTVLERLMEDISFDASEREGQSIQI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 +AEYV H+ + ++ D+ FIL Sbjct: 422 NAEYVSQHLDELVADEDLSRFIL 444 >gi|260779592|ref|ZP_05888482.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio coralliilyticus ATCC BAA-450] gi|260604401|gb|EEX30705.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio coralliilyticus ATCC BAA-450] Length = 444 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 225/443 (50%), Positives = 314/443 (70%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-------GKT-----ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEER+LDAL+ G++ ++SNTR++FRKKLR+G++ DKEI+++VA Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQQDESSSNTRQIFRKKLREGKLDDKEIEVDVAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +KK+ + + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKE-AFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMK Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTED I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEDVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D++YV+ +GD + D+ FIL Sbjct: 422 DSDYVKAKLGDTVEDEDLSRFIL 444 >gi|94676912|ref|YP_588629.1| ATP-dependent protease ATP-binding subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|122988121|sp|Q1LTT5|HSLU_BAUCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|94220062|gb|ABF14221.1| heat shock protein HslVU, ATPase subunit HslU [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 446 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/446 (50%), Positives = 306/446 (68%), Gaps = 16/446 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIV+ELD YIIGQ +AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVG Sbjct: 3 HMTPSEIVNELDDYIIGQHNAKRAVAIALRNRWRRMQLDETLRHEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSMEKNRFR 122 Query: 126 ASINAEERILDALVGKTATSN--------------TREVFRKKLRDGEISDKEIDIEVAD 171 A AEERILD L+ + +N TR+ FRKKLR+G++++KEI+I +A Sbjct: 123 AEERAEERILDVLIPQPTPNNWDKIEENNSSEPSSTRQHFRKKLREGQLNEKEIEINLAA 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 T + PG + L +F + G +K + +M +++ L+ +E+ +L++ + Sbjct: 183 TPIGVEIMAPPGMEEM-TNQLQSMFKNLAGQKQKSR-KMKIKEAMKLLIEEEAAKLVNQE 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +I+ VE GIVF+DE DKI R +G VS EGVQRDLLPLVEG +VSTK+G + Sbjct: 241 KIKEKAIEAVEQNGIVFIDEIDKICKRGDVSGPDVSSEGVQRDLLPLVEGCTVSTKHGMV 300 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TD+ILFIASGAF V+ P+DL+PE+QGR P+RV L++L DF+LILT+ ++L +QY Sbjct: 301 KTDYILFIASGAFQVASPSDLIPELQGRLPIRVELEALTPKDFQLILTEPNASLTMQYIA 360 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 LM TEG+ + FTED I +A+ A +N +IGARRL T++E ++EDIS+ AS+ KT Sbjct: 361 LMATEGVSISFTEDGIKRIAETAWQVNERTENIGARRLHTILELLMEDISYDASEWHGKT 420 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA+YVR H+ D S+ D FIL Sbjct: 421 ISIDADYVRSHLDDLVSDEDFSRFIL 446 >gi|145630324|ref|ZP_01786105.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae R3021] gi|144984059|gb|EDJ91496.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae R3021] Length = 444 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDVAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] gi|133740026|emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] Length = 445 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/447 (50%), Positives = 315/447 (70%), Gaps = 18/447 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELD++++GQ +AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARA 120 Query: 127 SINAEERILDALV----------GKTATSN------TREVFRKKLRDGEISDKEIDIEVA 170 AE+R++D LV T+TS+ TR+ FRK+LR+G + D EI+IE+A Sbjct: 121 EDAAEDRVIDILVPPARDFGFHPSATSTSDHSNDNATRQTFRKRLREGLLDDNEIEIELA 180 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + PG + + +FS G RKK ++ +++ L+ +E+ +L++ Sbjct: 181 EAGPTMEIMAPPGMEEM-TEQIKSMFSGA-GGNRKKARKIKIREAMKLLIEEEAGKLVNE 238 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 D + + +I VE GIVFLDE DKI R G VSR GVQRDLLPLVEG++V+TKYG Sbjct: 239 DELKQKAITNVEQNGIVFLDEIDKIANRSEQGGAEVSRAGVQRDLLPLVEGTTVNTKYGM 298 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF ILT T++ L QY+ Sbjct: 299 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTKQYQ 358 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG+ ++F +D I +A++A ++N +IGARRL TVME++LE+ISFSAS+ ++ Sbjct: 359 ALLATEGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASENPDQ 418 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ IDA YV +G + D+ ++L Sbjct: 419 TLPIDAAYVNERLGALSVDEDLSRYVL 445 >gi|77165804|ref|YP_344329.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani ATCC 19707] gi|254434376|ref|ZP_05047884.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani AFC27] gi|76884118|gb|ABA58799.1| Heat shock protein HslU [Nitrosococcus oceani ATCC 19707] gi|207090709|gb|EDZ67980.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus oceani AFC27] Length = 447 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/440 (53%), Positives = 306/440 (69%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV ELD++IIGQ AKRAVA+ALRNRWRR+Q+ +LR+E+ PKNIL++GPTGVGK Sbjct: 10 LTPRQIVQELDKHIIGQTAAKRAVAVALRNRWRRRQVSEELRNEITPKNILMIGPTGVGK 69 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDLVD+AI I RE +VR QA Sbjct: 70 TEIARRLAKLANAPFMKVEATKFTEVGYVGRDVESIIRDLVDIAIKITREQETAKVRNQA 129 Query: 127 SINAEERILDALVGKTAT---------SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERILDAL+ SNTR+ FRK LR+G + D+EI+IE+A S + Sbjct: 130 EDRAEERILDALLPAARAAPHDTMDEESNTRQKFRKMLREGRLDDREIEIELAAVSMGVE 189 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F +G R + R+ V++ + L +E+ +LI+ + + S Sbjct: 190 IMAPPGMEEM-TSQLQNMFQN-LGGTRTRARRLRVREAFKLLTEEEAGKLINDEDLKARS 247 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 ++ VE GIVFLDE DKI R +G VSREGVQRDLLPLVEGS+VSTKYG + TDHIL Sbjct: 248 LENVEQNGIVFLDEMDKIAKRSEFSGTDVSREGVQRDLLPLVEGSAVSTKYGMVRTDHIL 307 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+++P+DL+PE+QGR P+RV L +L+ DF ILT+ ++L QY L+KTEG Sbjct: 308 FIASGAFHLAKPSDLIPEMQGRLPIRVELGALSVDDFVRILTEPNASLTEQYTALLKTEG 367 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 I L FTE+ I +A +A +N +IGARRL TVMER+LE +SF A + K V+IDA Sbjct: 368 ISLHFTEEGIAHIAQIAWQVNERTENIGARRLHTVMERLLEGLSFEAENHTSKKVIIDAA 427 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV + D + D+ +IL Sbjct: 428 YVDAQLADLARDEDLSRYIL 447 >gi|329122377|ref|ZP_08250964.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116] gi|327473659|gb|EGF19078.1| heat shock protein HslVU [Haemophilus aegyptius ATCC 11116] Length = 454 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GP Sbjct: 9 KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGP 68 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + Sbjct: 69 TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128 Query: 122 VREQASINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVA 170 R +A AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ Sbjct: 129 NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S P G L LF +GS + KK +M ++ L+ DE+ +LI+ Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGM 307 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 LM TEG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ + Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV +G+ D+ FIL Sbjct: 428 TVNIDAAYVADALGEVVENEDLSRFIL 454 >gi|301063904|ref|ZP_07204379.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium NaphS2] gi|300441979|gb|EFK06269.1| ATP-dependent protease HslVU, ATPase subunit [delta proteobacterium NaphS2] Length = 468 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/457 (50%), Positives = 317/457 (69%), Gaps = 29/457 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD+YIIGQ AKR+VAIALRNRWRRQQ+ A+LRDE+ PKNI+++GPTGVGK Sbjct: 15 LTPREIVCELDKYIIGQDQAKRSVAIALRNRWRRQQVAAELRDEIAPKNIIMMGPTGVGK 74 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA +PF+KVE TKFTE+GYVGR+VE ++RDL ++A+N+ ++ ++ V +A Sbjct: 75 TEIARRLARLANSPFLKVEATKFTEVGYVGRDVESMVRDLSELAVNMAKKEEQEIVESRA 134 Query: 127 SINAEERILDALVGKT------------------------ATSNTREVFRKKLRDGEISD 162 + AEER+LD L+ K +TRE R+ LR G++ Sbjct: 135 AELAEERLLDILLPKKTEETQEEEEGERDRILEVVKSERDGMPSTREKLRRMLRSGKLDK 194 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 + +D+EV +SS+I +I A + + N+ E+F M +KKK R+ + + L Sbjct: 195 RYVDLEV--SSSNIPMVEIFSSAGMEEMEFNVKEIFGN-MFPQKKKKRRVKIPEAMEILF 251 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 ++ES RLIDMD V +I++ E GI+FLDE DK+ DS +G VSREGVQRDLLP+VE Sbjct: 252 QEESQRLIDMDKVVEKAIRITEQNGIIFLDELDKVAGNDSSHGPDVSREGVQRDLLPIVE 311 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V+TKYG I TDHILFIA+GAF+VS+P+DLLPE+QGRFP+RV L SL DF IL + Sbjct: 312 GSTVATKYGMIKTDHILFIAAGAFNVSKPSDLLPELQGRFPIRVELDSLTTEDFVRILLE 371 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ LI QYK LM TE I L F ++S++A+A++A +N + +IGARRL T+ME+++++I Sbjct: 372 PKNALITQYKALMATEEIELIFEDESVEAIAEMASKVNDRMENIGARRLHTIMEKLVDEI 431 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A DL EK+V ID YV + D + ++ +IL Sbjct: 432 SFDAPDLDEKSVTIDQPYVTEKLEDILEDENLSRYIL 468 >gi|16272441|ref|NP_438655.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus influenzae Rd KW20] gi|1170386|sp|P43773|HSLU_HAEIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|11513568|pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513569|pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513570|pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513571|pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513572|pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513573|pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513586|pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513587|pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513588|pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513589|pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513590|pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513591|pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex gi|11513596|pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae gi|21465932|pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465933|pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465934|pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465935|pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465936|pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465937|pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465950|pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465951|pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465952|pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465953|pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465954|pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|21465955|pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex gi|1573474|gb|AAC22154.1| heat shock protein (hslU) [Haemophilus influenzae Rd KW20] Length = 444 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|322513249|ref|ZP_08066373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus ureae ATCC 25976] gi|322120956|gb|EFX92803.1| ATP-dependent hsl protease ATP-binding subunit HslU [Actinobacillus ureae ATCC 25976] Length = 440 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 311/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDSHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAENRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV+ + D D+ FIL Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440 >gi|229844343|ref|ZP_04464483.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] gi|229812592|gb|EEP48281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] Length = 444 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +T+ ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|68249096|ref|YP_248208.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus influenzae 86-028NP] gi|145638588|ref|ZP_01794197.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|81336498|sp|Q4QN49|HSLU_HAEI8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|68057295|gb|AAX87548.1| HslU, ATP-dependent chaperone of the HslUV protease [Haemophilus influenzae 86-028NP] gi|145272183|gb|EDK12091.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|309750090|gb|ADO80074.1| Protease HslVU, ATPase subunit [Haemophilus influenzae R2866] Length = 444 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|90413625|ref|ZP_01221615.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] gi|90325398|gb|EAS41887.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] Length = 443 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ S+TR+ FRKKLR+G++ DK+I++++A Sbjct: 124 EELAEDRILDVLLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKDIEMDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ +M ++ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEDM-TNQLQGMFQNLAGNTSKKR-KMKIKDAIKAATEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVFLDE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF +S+P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QYK LM T Sbjct: 302 ILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPNASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + +DF+ED I+ +AD A +N +IGARRL TVMER++E++SF A+D ++ +VID Sbjct: 362 ESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV +G+ + D+ FIL Sbjct: 422 EAYVNERLGELVEDEDLSRFIL 443 >gi|260582238|ref|ZP_05850031.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus influenzae NT127] gi|260094606|gb|EEW78501.1| heat shock protein HslVU, ATPase subunit HslU [Haemophilus influenzae NT127] Length = 454 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/447 (52%), Positives = 309/447 (69%), Gaps = 12/447 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GP Sbjct: 9 KAMSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGP 68 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + Sbjct: 69 TGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK 128 Query: 122 VREQASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVA 170 R +A AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ Sbjct: 129 NRVRAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS 188 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S P G L LF +GS + KK +M ++ L+ DE+ +LI+ Sbjct: 189 AGVSMGVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINP 247 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G Sbjct: 248 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSAVSTKHGM 307 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK Sbjct: 308 VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYK 367 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 LM TEG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ + Sbjct: 368 ALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQ 427 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV +G+ D+ FIL Sbjct: 428 TVNIDAAYVSDALGEVVENEDLSRFIL 454 >gi|328675857|gb|AEB28532.1| ATP-dependent hsl protease ATP-binding subunit HslU [Francisella cf. novicida 3523] Length = 455 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 231/457 (50%), Positives = 312/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQIMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDNEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE + +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120 Query: 123 REQASINAEERILDALV----------------------GKTATSNTREVFRKKLRDGEI 160 E+A+ AE+RILD L+ K + TRE+FRKK+++GE+ Sbjct: 121 TEKAAKLAEDRILDVLIPPARASESKVGFANEPAEDAVTKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 DKEI+IEVA I PG + L +LFS + + +KK +M ++ Sbjct: 181 DDKEIEIEVAVAPKTIGVMGPPGMEDM-TSQLQDLFSS-LSTDKKKNKKMRIKDAIKLAQ 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +LI+ + + +++ VE GIVFLDE DK+ + S +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLINEEDIKARALEAVEQNGIVFLDEIDKVCRKSSNSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILRE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEG+ L F ED+I +A++A +N V +IGARRL TVMER+LE+I Sbjct: 359 PDCSILKQYIALMKTEGVDLSFEEDAIRKIAEIAYRVNEEVENIGARRLHTVMERLLEEI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L +K + I +YV +G+ D+ +IL Sbjct: 419 SFDAPELADKNINITTDYVNQKLGNLVKNKDLTQYIL 455 >gi|257095384|ref|YP_003169025.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047908|gb|ACV37096.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 443 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 306/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++I+GQ AK+AVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPQEIVYELDKHIVGQGKAKKAVAIALRNRWRRAQVAEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIKVE +KFTE+GYVGR+VE IIRDLV++A+ RE VR +A Sbjct: 64 TEIARRLARLANAPFIKVEASKFTEVGYVGRDVETIIRDLVEIAVKSGREQAVKGVRARA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ + S TR+ FRK+LR+GE+ DKEI++EVA S Sbjct: 124 EDAAEDRILDVLLPPARGNFFNDAQSSEDSATRQKFRKRLREGELDDKEIEVEVAAPSMQ 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 F PG + + +F + G GRKK ++ + + L+ +E+ + ++ + V Sbjct: 184 AEIFAPPGMEEL-TAQIQGMFQNI-GGGRKKSRKLKISEARKFLIDEEAAKQVNDEEVKL 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++++ VE GIVFLDE DKI +R +G+ VSR+GVQRDLLPLVEG++VSTKYG I TDH Sbjct: 242 EAVRNVEQNGIVFLDEIDKIASRSDTHGVDVSRQGVQRDLLPLVEGTTVSTKYGMIRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF ILT T++ L QY+ L+ T Sbjct: 302 VLFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVADFECILTQTDACLTKQYQALLAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ LDF + + LA++A ++N +IGARRL TVMER+LE++SFSA V ID Sbjct: 362 EGVTLDFAAEGVKRLAEIAWSVNERTENIGARRLYTVMERLLEEVSFSAGKEASDLVAID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + D+ ++L Sbjct: 422 ATYVDSRLAELAENEDLSRYVL 443 >gi|165977172|ref|YP_001652765.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|238687516|sp|B0BSG4|HSLU_ACTPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|165877273|gb|ABY70321.1| ATP-dependent protease, ATPase subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 440 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV+ + D D+ FIL Sbjct: 418 DEKYVQDALNDVVENEDLSRFIL 440 >gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] gi|151281322|gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] Length = 449 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/451 (50%), Positives = 312/451 (69%), Gaps = 20/451 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIVSELD++++GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I RE +VR Sbjct: 61 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRA 120 Query: 125 QASINAEERILDALV---------------GKTATSN---TREVFRKKLRDGEISDKEID 166 +A AE+RI+D LV TA S TR+ FRK+LR+G + D EI+ Sbjct: 121 RAEDAAEDRIIDILVPPARDFGFHPSSSTGSDTAPSTGNATRQTFRKRLREGTLDDTEIE 180 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 IE+A+ + PG + + +FS V G+ RKK ++ +++ L+ +E+ + Sbjct: 181 IELAEAGPSMEIMAPPGMEEM-TEQIKSMFSGVGGT-RKKTRKVKIKEAMKLLIEEEAGK 238 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 L++ D + + +I VE GIVFLDE DKI R G VSR GVQRDLLPLVEG++V+T Sbjct: 239 LVNEDELKQKAITNVEQNGIVFLDEIDKIATRSENGGADVSRAGVQRDLLPLVEGTTVNT 298 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF ILT T++ L Sbjct: 299 KYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLT 358 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ ++F D I +A++A ++N +IGARRL TVME++LE+ISFSA+D Sbjct: 359 RQYEALLGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSATD 418 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++T+VID YV +G D+ ++L Sbjct: 419 DPDQTLVIDGVYVDERLGALSVNEDLSRYVL 449 >gi|148825226|ref|YP_001289979.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus influenzae PittEE] gi|166221588|sp|A5U9Z5|HSLU_HAEIE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|148715386|gb|ABQ97596.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittEE] Length = 444 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFCVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|332524479|ref|ZP_08400688.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax benzoatilyticus JA2] gi|332107797|gb|EGJ09021.1| ATP-dependent protease ATP-binding subunit HslU [Rubrivivax benzoatilyticus JA2] Length = 439 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/441 (50%), Positives = 311/441 (70%), Gaps = 8/441 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T + +P+EIVSELDR+I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPT Sbjct: 1 MTHSMTPQEIVSELDRHIVGQNAAKRAVAIALRNRWRRQQVDEKLRGEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APF+KVE TKFTE+GYVG++V+ I+RDLV+VA+ RE Sbjct: 61 GVGKTEIARRLAKLADAPFVKVEATKFTEVGYVGKDVDTIVRDLVEVAVKQERERAIRRQ 120 Query: 123 REQASINAEERILDALVG-----KTATSNT-REVFRKKLRDGEISDKEIDIEVADTSSDI 176 R +A AEER+LDALV + ++ NT R+V RK+LR+G ++DKEI+IEVAD + Sbjct: 121 RAKAEDAAEERVLDALVPPPRDLRESSDNTARQVMRKRLREGTLADKEIEIEVADPKPSL 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LFS+ MG G++ ++ + + +L +E+ +L++ + + Sbjct: 181 EILG-PQGMEEMAEQLKGLFSQ-MGQGKRNVRKLKIAEALEKLTEEEAGKLVNEEEIRAA 238 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++ E GIVF+DE DK+ AR G VSR+GVQRDLLPLVEG++VSTKYG + TDHI Sbjct: 239 ALANAEGNGIVFIDEIDKVAARAEHGGADVSRQGVQRDLLPLVEGTAVSTKYGIVKTDHI 298 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF ILT T ++L+ QY+ L+ TE Sbjct: 299 LFIASGAFHLAKPSDLIPELQGRFPIRVELGSLSVDDFEAILTSTHASLVKQYQALLATE 358 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L+ +++ +A +A ++N +IGARRL TVMER+L+DISF A + +TV +DA Sbjct: 359 GVTLELAPEAVRRIAQIAYDVNERTENIGARRLATVMERLLDDISFDAPNRGGQTVTVDA 418 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 V +G+ + D+ +IL Sbjct: 419 AEVDRRLGELSRDEDLSRYIL 439 >gi|302343315|ref|YP_003807844.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus baarsii DSM 2075] gi|301639928|gb|ADK85250.1| heat shock protein HslVU, ATPase subunit HslU [Desulfarculus baarsii DSM 2075] Length = 457 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/456 (49%), Positives = 318/456 (69%), Gaps = 25/456 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV+ELD+Y+IGQ AKR+VAIALRNRWRR+Q+P +LRDE+ PKNIL++GPTGVG Sbjct: 3 QLTPRQIVAELDKYVIGQDQAKRSVAIALRNRWRRRQVPEELRDEIAPKNILMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++A APF KVE +KFTE+GY+GR+VE +IRDLV++A+N+V+ + R+ VRE+ Sbjct: 63 KTEIARRLAKMADAPFFKVEASKFTEVGYMGRDVESMIRDLVELAVNMVKNAERERVREK 122 Query: 126 ASINAEERILDALV--------GK-------------TATSNTREVFRKKLRDGEISDKE 164 A AEER+LD L+ GK + + TR RK LR+G++S++ Sbjct: 123 AQELAEERLLDILLPPRQLAHDGKDLDESSHLELVRDSEENPTRAKLRKLLREGKLSERY 182 Query: 165 IDIEV--ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 +D+E+ A S + GG +NL E+ V K++ ++ V + L Sbjct: 183 VDLELDAAKPSGPMVEIFSAGGMEDLEMNLREMLGSVFPKQPKRR-KVKVPEALELLANA 241 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEG 281 E+ +LIDMD V +++ VE G++FLDE DKI R+ SG G VSREGVQRDLLPLVEG Sbjct: 242 EAAKLIDMDKVVEEALAKVEQEGMIFLDEIDKIATREHSGRGPDVSREGVQRDLLPLVEG 301 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V+TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L DF ILT+ Sbjct: 302 STVNTKYGMVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELEALTPEDFVRILTEP 361 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 E+ L QYK LM TEG+ L+F +SI+A+A +A +N + +IGARRL TVME++LE+++ Sbjct: 362 ENALTTQYKALMATEGLELEFLPESIEAIAQIAGRVNQSTENIGARRLHTVMEKLLEEVA 421 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F+A D+ + +DA YVR + +TD+ +IL Sbjct: 422 FNAPDMAGVRLSVDAAYVRQRLEAISVDTDLSRYIL 457 >gi|319897987|ref|YP_004136184.1| molecular chaperone and atpase component of hsluv protease [Haemophilus influenzae F3031] gi|317433493|emb|CBY81876.1| molecular chaperone and ATPase component of HslUV protease [Haemophilus influenzae F3031] Length = 444 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +T+ ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTINID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|325982875|ref|YP_004295277.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas sp. AL212] gi|325532394|gb|ADZ27115.1| ATP-dependent hsl protease ATP-binding subunit hslU [Nitrosomonas sp. AL212] Length = 440 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 231/451 (51%), Positives = 321/451 (71%), Gaps = 31/451 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++IIGQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPQEIVHELDKHIIGQNSAKRAVAIALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + A V+ESR E R++ Sbjct: 61 TEIARRLAKLAHAPFIKIEATKFTEVGYVGRDVDSIIRDLAETA---VKESRERETRKKQ 117 Query: 127 SI---NAEERILDALVGKT----ATSNT-------REVFRKKLRDGEISDKEIDIEVADT 172 + +AE+RILDAL+ + A NT R+ FRKKLR+GE+ DKEI+IEVA + Sbjct: 118 PLAEDHAEDRILDALLPGSRDFGAQMNTDDHNNLTRQKFRKKLREGELDDKEIEIEVAAS 177 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMG-----SGRKKKIR-MSVQKCYPELMRDESDR 226 + + F PG + +L S++ G +G +KK R +++++ L+ +E+ + Sbjct: 178 RASMEIFAPPG--------MEDLTSQIQGMFQNMTGERKKTRKLTIREAKKILLEEEAAK 229 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 +++ + + ++Q VE GIVFLDE DKI +R + G VSR+GVQRDLLPLVEG++VST Sbjct: 230 MVNDEELKLSALQNVEQNGIVFLDEIDKIASRANNAGGDVSRQGVQRDLLPLVEGTTVST 289 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ SDF ILT+T++ L Sbjct: 290 KYGMIKTDHILFIASGAFHMSKPSDLIPELQGRFPIRVELGSLSVSDFEQILTNTDACLT 349 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ L F D+I LA++A ++NS +IGARRL TV+E++LE++S++A Sbjct: 350 RQYEALLATEGVTLQFGGDAIKRLAEIAHSVNSKTENIGARRLHTVIEKLLEEVSYNAPK 409 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +T+VI+A YV + D D+ ++L Sbjct: 410 HSGETLVINAAYVDERLKDLSQSEDLARYVL 440 >gi|145640470|ref|ZP_01796054.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae R3021] gi|145275056|gb|EDK14918.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.4-21] Length = 444 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|145628877|ref|ZP_01784677.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] gi|144979347|gb|EDJ89033.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] Length = 444 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVVDALGEVVENEDLSRFIL 444 >gi|268317431|ref|YP_003291150.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus DSM 4252] gi|262334965|gb|ACY48762.1| heat shock protein HslVU, ATPase subunit HslU [Rhodothermus marinus DSM 4252] Length = 467 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/465 (50%), Positives = 319/465 (68%), Gaps = 36/465 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ELD+YI+GQ++AK+ VAIALRNRWRR P ++R+E+MP NIL++GPTGVGK Sbjct: 5 LTPREIVAELDKYIVGQEEAKKCVAIALRNRWRRLNAPPEMREEIMPNNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LAGAPFIKVE TKFTE+GYVGR+V+ +IRDLVD+A+N+VRE VR++A Sbjct: 65 TEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVDSMIRDLVDIAVNMVREEHEQRVRDRA 124 Query: 127 SINAEERILDALVGKTATS------------------------------NTREVFRKKLR 156 AEERILD LV + TR+ FR+KL+ Sbjct: 125 RELAEERILDILVPPARPTPRPEMVQGPGFFLQSTATTAADDAEAEARERTRQRFREKLK 184 Query: 157 DGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 GE+ D+EI+IEV ADT + F G +G+ NL ELF + G R+KK R++V + Sbjct: 185 AGELDDREIEIEVAADTMPMVQVFGPLGIEEMGV-NLQELFGNLTGR-RRKKRRVTVAEA 242 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRD 274 L ++E+ +LIDMD V R++++ VE GIVF+DE DK+ ARD G VSREGVQRD Sbjct: 243 REILTQEEAQKLIDMDKVTREALERVEQSGIVFIDEIDKVAARDGARGGPDVSREGVQRD 302 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 LLPLVEG SV TKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF Sbjct: 303 LLPLVEGCSVMTKYGMVRTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEEDF 362 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 ILT ++ L+ QY+ L+K EG+ ++FT+ ++ +A++A +N V +IGARRL TV+ Sbjct: 363 YKILTQPKNALLKQYQALLKAEGVEIEFTDAAVRKIAEIAARVNEEVENIGARRLHTVLT 422 Query: 395 RVLEDISFSASD--LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LEDI F D +++ +V+DA+ V + D+ +IL Sbjct: 423 TLLEDILFEVPDNVPEDRKIVVDADLVEQRLSGIVQNRDLSQYIL 467 >gi|319775580|ref|YP_004138068.1| molecular chaperone and ATPase component of HslUV protease [Haemophilus influenzae F3047] gi|301169214|emb|CBW28811.1| molecular chaperone and ATPase component of HslUV protease [Haemophilus influenzae 10810] gi|317450171|emb|CBY86385.1| molecular chaperone and ATPase component of HslUV protease [Haemophilus influenzae F3047] Length = 444 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/442 (52%), Positives = 308/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|237749448|ref|ZP_04579928.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] gi|229380810|gb|EEO30901.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] Length = 443 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/446 (51%), Positives = 309/446 (69%), Gaps = 16/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P +IV+ELD++++GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNLTPDQIVTELDKHVVGQSKAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDLVD++I RE+ +VR Sbjct: 61 GKTEIARRLARLAEAPFIKIEATKFTEVGYVGRDVDTIIRDLVDISIKQTREAEMKKVRT 120 Query: 125 QASINAEERILDALV-------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171 +A AE+R+L+ L+ ++ NTR+VFRKKLR+G + DKEI+IEV D Sbjct: 121 KAIDAAEDRVLNILIPPPRDFGFNSNESNASSGENTRQVFRKKLREGSLDDKEIEIEV-D 179 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 S P G + +FS MGSGRKK ++ V+ L+ +E+ +L++ D Sbjct: 180 ESGPHMEIMAPPGMEEMTEQIKSMFSG-MGSGRKKSRKVKVRDAIKLLIEEEAAKLVNED 238 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + + +I E GIVFLDE DKI +R G VSR GVQRDLLPL+EG++V+TKYG I Sbjct: 239 ELRQKAITNAEQNGIVFLDEIDKIASRSEIGGADVSRAGVQRDLLPLIEGTTVNTKYGMI 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAF +S+P+DL+PE+QGR P+RV L+SL+ DF ILT TE++LI QYK Sbjct: 299 KTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELESLSIEDFEQILTSTEASLISQYKA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TEG+ L+F ++I LA+++ +N +IGARRL TVMER+LE+ISF+A D T Sbjct: 359 LLATEGMQLEFDNEAIRRLAEISHTVNERTENIGARRLYTVMERLLEEISFTAVDYN-GT 417 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 + ID YV + ++ D+ ++L Sbjct: 418 LTIDKAYVNERLEALSTDEDLSRYVL 443 >gi|229846582|ref|ZP_04466690.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] gi|229810675|gb|EEP46393.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] Length = 444 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L LF +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQN-LGSDKTKKRKMKIKDGLKALIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D++ +A+ A +N +IGARRL TVMER+++ ISFSASD+ +TV ID Sbjct: 363 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVADALGEVVENEDLSRFIL 444 >gi|238898390|ref|YP_002924071.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259491374|sp|C4K5T0|HSLU_HAMD5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|229466149|gb|ACQ67923.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 443 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 228/444 (51%), Positives = 307/444 (69%), Gaps = 15/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIV +LD YIIGQ DAKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVG Sbjct: 3 DMTPSEIVKKLDDYIIGQDDAKRAVAIALRNRWRRMQLDTELRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D A+ +VR +++R++ Sbjct: 63 KTEIARRLAKLAEAPFIKVEATKFTEVGYVGKEVESIIRDLTDTAVKMVRHQAIEKMRDK 122 Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A A+ERILD LV G TS R+ F + L GE++++EI+I++A T Sbjct: 123 AKELAQERILDILVSPARNSSGQVEGSQNTSTARQFFLEPLIKGELNEQEIEIDLAVTPV 182 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTV 233 DI PG + L +F + S +K KIR M + L+ +E+ +L++ + + Sbjct: 183 DIEIMSPPGMEEM-TNQLQSMFQHM--SSQKHKIRKMKIGDALKLLIDEEASKLVNPEEL 239 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + +I VE GIVF+DE DKI S + VSREGVQRDLLPLVEG +VSTK+G + T Sbjct: 240 KQVAIHSVEQNGIVFIDEVDKICRHGSKSTSDVSREGVQRDLLPLVEGCTVSTKHGMVKT 299 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V++P+DL+PE+QGRFP+RV LKSL DF ILT+ ++L QYK LM Sbjct: 300 DHILFIASGAFQVAKPSDLIPELQGRFPIRVELKSLTPKDFERILTEPSASLTYQYKSLM 359 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEGI ++FT+D I ++A A +N +IGARRL T++ERV+EDIS++A +++K++ Sbjct: 360 KTEGIKIEFTKDGITSIAGAAGQVNENTENIGARRLHTILERVMEDISYNADKIKKKSIT 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 ID++YV H+ + D+ FIL Sbjct: 420 IDSKYVDTHLSKLINNEDLSRFIL 443 >gi|90408769|ref|ZP_01216914.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3] gi|90310113|gb|EAS38253.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3] Length = 446 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/445 (50%), Positives = 307/445 (68%), Gaps = 14/445 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++I +ELDR+IIGQ AKRAVAIALRNRWRR QL ++R E+ PKNIL++GPTGVG Sbjct: 3 NMTPKQITAELDRHIIGQNKAKRAVAIALRNRWRRMQLDEEIRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLV+V+I + RE +V + Sbjct: 63 KTEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVESIIRDLVEVSIKLTREEDMKKVTTK 122 Query: 126 ASINAEERILDALV------GKTATSN-------TREVFRKKLRDGEISDKEIDIEVADT 172 A+ AE++ILD L+ G+ TSN R+ FRKKLR+G++ DKEI++ V Sbjct: 123 AADIAEDKILDILIPPAKTSGEWDTSNDVVEDGAARQSFRKKLREGKLDDKEIEVSVPSP 182 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + PG + L +F + G KK +M ++ ++ ES LI+ D Sbjct: 183 QIGVEIMAPPGMEEM-TNQLQGMFQNLAGKNENKKRKMKIKDALKSIIEIESANLINQDD 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +I EN+GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTKYG + Sbjct: 242 IKERAIFAAENHGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKYGMVK 301 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDH+LFIASGAF V+RP+DL+PE+QGR P+RV L++L + D ILT+ +++L QY+ L Sbjct: 302 TDHMLFIASGAFQVARPSDLIPELQGRLPIRVELEALTEEDLSRILTEPKASLSEQYQAL 361 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + TEG+ ++FT+D ID +A A ++N T +IGARRL T+MER+++++S+ ASD + +V Sbjct: 362 LATEGVSIEFTQDGIDKIAHSAWHVNETTENIGARRLHTLMERIMDELSYEASDRKGDSV 421 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +IDA+YV + D D+ FIL Sbjct: 422 IIDAQYVANRLDDVIKNEDLSRFIL 446 >gi|187730898|ref|YP_001882626.1| ATP-dependent protease ATP-binding subunit HslU [Shigella boydii CDC 3083-94] gi|238691703|sp|B2TWC7|HSLU_SHIB3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU gi|187427890|gb|ACD07164.1| heat shock protein HslVU, ATPase subunit HslU [Shigella boydii CDC 3083-94] Length = 443 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ G+T S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+ I +A+ A +N + +IGARRL TV+ER++E+IS+ ASDL + + ID Sbjct: 362 EGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV + ++ D+ FIL Sbjct: 422 ADYVSKRLDALVADEDLSRFIL 443 >gi|114319231|ref|YP_740914.1| ATP-dependent protease ATP-binding subunit HslU [Alkalilimnicola ehrlichii MLHE-1] gi|122312755|sp|Q0ACL3|HSLU_ALHEH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114225625|gb|ABI55424.1| heat shock protein HslVU, ATPase subunit HslU [Alkalilimnicola ehrlichii MLHE-1] Length = 440 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/440 (50%), Positives = 311/440 (70%), Gaps = 10/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD+YIIGQ AKR+VAIALRNRWRR Q+ L+ E+ PKNIL++GPTGVG Sbjct: 3 EMTPREIVQELDKYIIGQDAAKRSVAIALRNRWRRMQVDEALQPEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLVD+AI +VRE + V+ Q Sbjct: 63 KTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLVDIAIKLVREEAMERVQHQ 122 Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A+ AE+R+LD ++ + ++ TR+ RKKLR+G + D+EI++E+ + + Sbjct: 123 AADAAEDRVLDIMLPRAQSFDQEDPSAGTRQKLRKKLREGALDDREIEVELRASPMGVEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L ++F G + K+ +M V+ L +E+ RL++ + + +++ Sbjct: 183 MAPPGMEEM-TNQLQQMFQN-FGGEKTKRRKMKVKDALEVLKDEEAARLVNDEDLKAEAV 240 Query: 239 QMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 + VE IVFLDE DK+ R + G G VSREGVQRDLLPLVEGS+VSTK+G + TDHIL Sbjct: 241 ERVEQNAIVFLDEIDKVCKRAEQGTGGDVSREGVQRDLLPLVEGSTVSTKHGMVRTDHIL 300 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+S+P+DL+PE+QGR P+RV L++L DF IL++ ++L+ QY+ L+ TEG Sbjct: 301 FIASGAFHLSKPSDLIPELQGRLPIRVELEALTTDDFVRILSEPSASLVHQYQALIATEG 360 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 L+FTED I +A+VA +NS +IGARRL TVMER+LE+IS+SA+D + V +DA+ Sbjct: 361 CELEFTEDGIRRVAEVAWEVNSRTENIGARRLHTVMERLLEEISYSAADRGGQQVTVDAD 420 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+G + D+ +IL Sbjct: 421 YVDQHLGGLVQDEDLSRYIL 440 >gi|307257824|ref|ZP_07539581.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863730|gb|EFM95656.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 438 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R +A Sbjct: 61 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120 Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LF M + KK +M ++ ++ +E+ +L++ + + + Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TDHI Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVRTDHI 297 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMKTE Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VID Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV+ + D D+ FIL Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438 >gi|312882762|ref|ZP_07742496.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio caribbenthicus ATCC BAA-2122] gi|309369546|gb|EFP97064.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio caribbenthicus ATCC BAA-2122] Length = 444 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/443 (51%), Positives = 311/443 (70%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAIN+ + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAINMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ + TSNTR+VFRKKLR+G++ DK+I++++A Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQEEGTSNTRQVFRKKLREGKLDDKDIEVDLAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G KKK ++ ++ L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGD-TKKKRKLKIKDALKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ SGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LM+ Sbjct: 302 HILFVTSGAFQVAKPSDLIPELQGRLPIRVELEALSSEDFKRILTEPKASLTEQYIALMQ 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTED I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TENVDIEFTEDGIVQIAEAAWTVNETTENIGARRLHTVMERLMDEISFDATDKAGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YV+ +G+F + D+ FIL Sbjct: 422 DADYVKTRLGEFVEDEDLSRFIL 444 >gi|307251032|ref|ZP_07532956.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856862|gb|EFM88994.1| ATP-dependent hsl protease ATP-binding subunit hslU [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 438 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 311/441 (70%), Gaps = 13/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R +A Sbjct: 61 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRMRA 120 Query: 127 SINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 QDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS-- 178 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LF M + KK +M ++ ++ +E+ +L++ + + + Sbjct: 179 VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELKQQ 237 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TDHI Sbjct: 238 AIEAVEQHGIVFIDEIDKICKKGEYSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHI 297 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMKTE Sbjct: 298 LFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTE 357 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VID Sbjct: 358 GVEIEFTKDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVIDE 417 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV+ + D D+ FIL Sbjct: 418 KYVQDALNDVVENEDLSRFIL 438 >gi|297581511|ref|ZP_06943434.1| protease HslVU [Vibrio cholerae RC385] gi|297534349|gb|EFH73187.1| protease HslVU [Vibrio cholerae RC385] Length = 443 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 231/444 (52%), Positives = 310/444 (69%), Gaps = 17/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS--VQKCYPELMRDESDRLIDMDTV 233 + PG + L LF + G +KK+ QK L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKDAQKA---LVEEEAAKLVNQEEL 239 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + T Sbjct: 240 KEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRT 299 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LM Sbjct: 300 DHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALM 359 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTE + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + V Sbjct: 360 KTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFV 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV+ +G+ + D+ FIL Sbjct: 420 IDAAYVKARLGELVEDEDLSRFIL 443 >gi|257464769|ref|ZP_05629140.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus minor 202] gi|257450429|gb|EEV24472.1| ATP-dependent protease ATP-binding subunit HslU [Actinobacillus minor 202] Length = 440 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ ++TR++FRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNASTRQIFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV + D D+ FIL Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440 >gi|323498089|ref|ZP_08103093.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis DSM 21326] gi|323316800|gb|EGA69807.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio sinaloensis DSM 21326] Length = 444 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLDESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEERILDAL+ +SNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQQDETSSNTRQIFRKKLREGKLDDKEIEIDVAAPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +KK+ + L +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AFKALTEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMK Sbjct: 302 HILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYVALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + ++FTE+ I +A+ A +N T +IGARRL TVMER++++ISF A+D + I Sbjct: 362 TEDVDIEFTEEGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISFEATDKSGSKLTI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA YV+ +GD + D+ FIL Sbjct: 422 DAAYVKAKLGDTIEDEDLSRFIL 444 >gi|254360691|ref|ZP_04976840.1| arginine ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica PHL213] gi|1346415|sp|P32180|HSLU_PASHA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|387857|gb|AAA25534.1| ATP-binding protein [Mannheimia haemolytica] gi|153091231|gb|EDN73236.1| arginine ABC superfamily ATP binding cassette transporter, ABC protein [Mannheimia haemolytica PHL213] Length = 440 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/443 (51%), Positives = 312/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+ ++ + Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ ++TR+ FRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + + ++I Sbjct: 358 TEGVEIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D YV + D D+ FIL Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440 >gi|262401961|ref|ZP_06078526.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. RC586] gi|262351933|gb|EEZ01064.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. RC586] Length = 443 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G++SDKEI+I VA Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEDNSSTRQVFRKKLREGQLSDKEIEINVATPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ M ++ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRK-MKIKDALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ IL++ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILSEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VID Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ FIL Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443 >gi|90022343|ref|YP_528170.1| ATP-dependent protease ATP-binding subunit HslU [Saccharophagus degradans 2-40] gi|123090267|sp|Q21H71|HSLU_SACD2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|89951943|gb|ABD81958.1| heat shock protein HslVU, ATPase subunit HslU [Saccharophagus degradans 2-40] Length = 438 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/439 (51%), Positives = 313/439 (71%), Gaps = 10/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD++I+GQQDAK+AVAIALRNRWRR QL A LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPREIVHELDQHIVGQQDAKKAVAIALRNRWRRMQLDAKLRTEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE TKFTE+GYVGR+VE IIRDLVD +I ++RE +VR + Sbjct: 63 KTEIARRLAKLTNAPFIKVEATKFTEVGYVGRDVESIIRDLVDSSIKMMREQEMTKVRHR 122 Query: 126 ASINAEERILDALV-------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A AEERIL+AL+ G S+TR++FRKKLR+G++ DKEI+I+V+ T + Sbjct: 123 AEEAAEERILNALLPPARGEDGAVEDSSTRQIFRKKLREGQLDDKEIEIDVSATPVGVEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +FS M +G+ KK +++V+K + +L +E+ +L++ + + +I Sbjct: 183 MAPPGMEDM-TSQLQNMFSS-MNTGKTKKTKLTVKKAFKKLTDEEAAKLVNEEELKAQAI 240 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 E GIVF+DE DK+ R+ +G VSREGVQRDLLPL+EG +VSTK+G I TDHILF Sbjct: 241 DAAEQNGIVFIDEIDKVAKREGNSGADVSREGVQRDLLPLIEGCTVSTKHGMIKTDHILF 300 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 I SGAFHVS+P+DL+PE+QGR P+RV L++L DF ILT+ ++L Q++ L+ TEG Sbjct: 301 ITSGAFHVSKPSDLIPELQGRLPIRVELQALTPDDFERILTEPTASLTEQHQSLLATEGT 360 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 ++FT D I +A++A +N + +IGARRL TV+E++LE+ISF+A + + V IDA + Sbjct: 361 QIEFTADGIRKIAEIAYQVNKSTENIGARRLHTVLEKLLEEISFAAGE-SDNNVTIDAAF 419 Query: 419 VRLHIGDFPSETDMYHFIL 437 V +G+ D+ FIL Sbjct: 420 VDGQLGELTKNEDLSRFIL 438 >gi|253991723|ref|YP_003043079.1| ATP-dependent protease ATP-binding subunit HslU [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638498|emb|CAR67119.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783173|emb|CAQ86338.1| atp-dependent hsl protease atp-binding subunit hslu [Photorhabdus asymbiotica] Length = 443 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNYIIGQDKAKRAVAIALRNRWRRMQLNETLRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ ++ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEIQSEPSAARQAFRKKLREGQLDDKEIEIDLATAPVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G K + ++ ++ + L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLAGQKHKSR-KLKIKDAFKLLVEEEASKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDSVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ + FT D I +A+ A +N + +IGARRL TV+ER++EDISF AS+ ++V I+ Sbjct: 362 EGMNISFTADGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISFEASERHGQSVDIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV+ H+ + ++ D+ FIL Sbjct: 422 ADYVKEHLDELVADEDLSRFIL 443 >gi|157373025|ref|YP_001481014.1| ATP-dependent protease ATP-binding subunit HslU [Serratia proteamaculans 568] gi|167017229|sp|A8GL96|HSLU_SERP5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157324789|gb|ABV43886.1| heat shock protein HslVU, ATPase subunit HslU [Serratia proteamaculans 568] Length = 444 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/443 (50%), Positives = 306/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR D+ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIDKNRTRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S+ R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEEHQEPSSARQAFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGGQKQKPRKLKIKEAFKLLVEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF + P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMG 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT + I +A+ A +N + +IGARRL TV+ER++EDIS+ AS++ +++ I Sbjct: 362 TEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YVR H+ + ++ D+ FIL Sbjct: 422 DADYVRNHLDELVADEDLSRFIL 444 >gi|239813916|ref|YP_002942826.1| ATP-dependent protease ATP-binding subunit HslU [Variovorax paradoxus S110] gi|239800493|gb|ACS17560.1| heat shock protein HslVU, ATPase subunit HslU [Variovorax paradoxus S110] Length = 442 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 219/444 (49%), Positives = 311/444 (70%), Gaps = 13/444 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P+EIVSELD +I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPQEIVSELDNHIVGQPAAKRAVAIALRNRWRRQQVEEKLRTEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDL ++A+ RE+ +VR Sbjct: 61 GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLAEIAVKQTREAESAKVRA 120 Query: 125 QASINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILD L+ G T + TR+ FRKKLR+ ++ DKEI++++A+ Sbjct: 121 RAEDAAEDRILDVLLPPARGAEGATPALDGPNPTRQAFRKKLREHQLDDKEIELDLAEAR 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + + P G L +F + +G G++K ++ + + L+ +E+ +L++ D + Sbjct: 181 APLEIMG-PAGMEEMTEQLRGMFGQ-LGGGKRKTRKLKIAEAMRLLIDEEAAKLVNEDEI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I E GIVF+DE DK+ R G VSR+GVQRDLLPLVEG++VSTKYG + T Sbjct: 239 RTQAITNAEQNGIVFIDEIDKVATRSEAQGSDVSRQGVQRDLLPLVEGTAVSTKYGVVRT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ SDF ILT T ++L+ QY+ L+ Sbjct: 299 DHMLFIASGAFHLSKPSDLIPELQGRFPIRVELQSLSVSDFESILTQTRASLVKQYQALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 TEG+ L+FT + ++ LA +A +N +IGARRL TVMER+L+++SF A+ ++ +T+ Sbjct: 359 ATEGVTLEFTPEGVNRLATIAYEVNERTENIGARRLSTVMERLLDEVSFDATRIEGQTIR 418 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 IDA YV + + D+ FIL Sbjct: 419 IDAAYVDERLAALSHDEDLSRFIL 442 >gi|121590923|ref|ZP_01678245.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80] gi|121727614|ref|ZP_01680722.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52] gi|147673421|ref|YP_001218163.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae O395] gi|153213971|ref|ZP_01949164.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587] gi|153819926|ref|ZP_01972593.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457] gi|153825145|ref|ZP_01977812.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2] gi|153829461|ref|ZP_01982128.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39] gi|229507278|ref|ZP_04396783.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae BX 330286] gi|229513594|ref|ZP_04403058.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae TMA 21] gi|229521739|ref|ZP_04411157.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae TM 11079-80] gi|229524652|ref|ZP_04414057.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae bv. albensis VL426] gi|229527401|ref|ZP_04416793.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae 12129(1)] gi|254225407|ref|ZP_04919018.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51] gi|254285865|ref|ZP_04960827.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226] gi|262170081|ref|ZP_06037770.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae RC27] gi|262191443|ref|ZP_06049630.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae CT 5369-93] gi|172047532|sp|A5F4X3|HSLU_VIBC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|121547245|gb|EAX57369.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 2740-80] gi|121630105|gb|EAX62510.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V52] gi|124115541|gb|EAY34361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 1587] gi|125622041|gb|EAZ50364.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae V51] gi|126509524|gb|EAZ72118.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae NCTC 8457] gi|146315304|gb|ABQ19843.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395] gi|148875044|gb|EDL73179.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae 623-39] gi|149741291|gb|EDM55333.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-2] gi|150424047|gb|EDN15986.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae AM-19226] gi|227014562|gb|ACP10772.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O395] gi|229335033|gb|EEO00518.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae 12129(1)] gi|229338233|gb|EEO03250.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae bv. albensis VL426] gi|229341333|gb|EEO06337.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae TM 11079-80] gi|229349471|gb|EEO14427.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae TMA 21] gi|229354783|gb|EEO19704.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae BX 330286] gi|262021489|gb|EEY40201.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae RC27] gi|262032683|gb|EEY51234.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae CT 5369-93] gi|327485147|gb|AEA79554.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae LMA3894-4] Length = 443 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/442 (51%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VID Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ FIL Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443 >gi|88813054|ref|ZP_01128296.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231] gi|88789687|gb|EAR20812.1| Heat shock protein HslU [Nitrococcus mobilis Nb-231] Length = 441 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/441 (50%), Positives = 305/441 (69%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD+YIIGQ AK+AVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPREIVQELDKYIIGQARAKQAVAIALRNRWRRMQVDEALRAEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAGAPFIK+E TKFTE+GYVGR+VE +IRDL D+A+ + R+ ++V Sbjct: 63 KTEIARRLAKLAGAPFIKIEATKFTEVGYVGRDVESMIRDLADIAVKMTRQQEMEKVTTA 122 Query: 126 ASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 A AEERILD L+ + + TR+ RKKLR+G++ +EI+IEV + Sbjct: 123 ALDAAEERILDTLLPRARGFGTEDESADATRQKMRKKLREGDLDAREIEIEVRSAPIGME 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F + G R + RM ++ + L +E +L++ + V R + Sbjct: 183 IMAPPGMEEM-TGQLQNMFQNLTGE-RTRTRRMKIKDAWRVLREEEGAKLVNEEEVKRKA 240 Query: 238 IQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++ VE GIVFLDE DK+ R + G+G+ VSREGVQRDLLPLVEGS+VSTK+G INT+HI Sbjct: 241 LEAVEQNGIVFLDEIDKVAKRGEHGSGMDVSREGVQRDLLPLVEGSTVSTKHGMINTNHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGR P+RV L L DF ILT+ +++L+ QY+ L+ TE Sbjct: 301 LFIASGAFHLSKPSDLIPELQGRLPIRVELDPLTVDDFVRILTEPDASLVRQYQALIATE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L+FT++ +D +A+VA +N +IGARRL TVMER+LE +S+ A D E+ V ID Sbjct: 361 GVRLEFTKEGVDRIAEVAWEVNERTENIGARRLHTVMERLLETVSYEAPDRAEELVRIDD 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV H+ D + D+ +IL Sbjct: 421 HYVDEHLADLARDQDLSRYIL 441 >gi|52424327|ref|YP_087464.1| ATP-dependent protease ATP-binding subunit [Mannheimia succiniciproducens MBEL55E] gi|62286783|sp|Q65VY1|HSLU_MANSM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|52306379|gb|AAU36879.1| HslU protein [Mannheimia succiniciproducens MBEL55E] Length = 440 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/443 (51%), Positives = 315/443 (71%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+++ +VR+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADISMKLVRQQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V +T ++TR+VFRKKLR+G++ ++EI+I+++ T Sbjct: 121 KAQDAAEDRILDVLLPPAKDQWGNVQETGNASTRQVFRKKLREGQLDEREIEIDIS-TPV 179 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 ++ PG + L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 180 NVEIMTPPGMEDM-TSQLQSLFEG-MSPNKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QKAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + VVI Sbjct: 358 TEGVDIEFTQDGISKIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERAGEKVVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV + D D+ FIL Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440 >gi|54307474|ref|YP_128494.1| ATP-dependent protease ATP-binding subunit HslU [Photobacterium profundum SS9] gi|62286820|sp|Q6LVI3|HSLU_PHOPR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|46911894|emb|CAG18692.1| putative ATP-dependent protease HslVU, ATPase subunit [Photobacterium profundum SS9] Length = 443 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQDKAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMSKVQFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ S+TR+ FRKKLR+G++ DKEI++++A Sbjct: 124 EELAEDRILDILLPPARDQWGQNEENDTDSSTRQSFRKKLREGKLDDKEIEMDIAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G+ KK+ +M ++ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEDM-TNQLQGMFQNLAGNTSKKR-KMKIKDAIKAATEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVFLDE DKI R +G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 QAIFSVENNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF +S+P+DL+PE+QGR P+RV L++L DF+ ILT+ +++L QYK LM T Sbjct: 302 ILFVASGAFQMSKPSDLIPELQGRLPIRVELEALTSHDFKRILTEPKASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + +DF+ED I+ +AD A +N +IGARRL TVMER++E++SF A+D ++ ++ID Sbjct: 362 ESVNIDFSEDGINKIADAAWQVNERTENIGARRLHTVMERLMEELSFDATDRSDELLIID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV + + D+ FIL Sbjct: 422 EAYVNERLDELVENEDLSRFIL 443 >gi|304311982|ref|YP_003811580.1| Heat shock protein chaperone [gamma proteobacterium HdN1] gi|301797715|emb|CBL45937.1| Heat shock protein chaperone [gamma proteobacterium HdN1] Length = 446 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/448 (51%), Positives = 314/448 (70%), Gaps = 19/448 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QLP +R+E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVSELDKHIIGQHDAKRAVAIALRNRWRRMQLPETMRNEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+A+ +VRE ++VR +A Sbjct: 61 TEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLADMAVKLVREQEMEKVRNRA 120 Query: 127 SINAEERILDALVGKTATSN-------------TREVFRKKLRDGEISDKEIDIEVADTS 173 AE+RILD LV + +S+ TR+VFRKKLR+G++ DKEI+IE+A S Sbjct: 121 LDAAEDRILDVLVPQPRSSDWQTSTLERNEDSATRQVFRKKLREGQLDDKEIEIELAAPS 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L +FS + SG+ KK R+ ++ + + +E+ +L++ D + Sbjct: 181 VGVEIMAPPGMEEM-TSQLQSMFSSI-SSGKLKKKRLKIKDAFTRIQDEEAAKLVNEDEI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++ VE GIVF+DE DK+ R +G VSREGVQRDLLPL+EG +V+TKYG + T Sbjct: 239 KGRAVKAVEQNGIVFIDEIDKVAKRGEFSGSDVSREGVQRDLLPLIEGCTVNTKYGMVRT 298 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+ DF ILT+ ++ QYK L+ Sbjct: 299 DHILFIASGAFHLSKPSDLVPELQGRLPIRVELQALSADDFVKILTEPNCSITEQYKALL 358 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ----E 409 EG+ +DF +D+I +A++A +N V +IGARRL TVME++LEDIS+ ASDL E Sbjct: 359 GAEGLKVDFADDAIRRIAEIAWQVNERVENIGARRLHTVMEKLLEDISYDASDLATQHGE 418 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ A+ V + D+ +IL Sbjct: 419 NVYMLHAQQVDDRLQALAGNEDLSRYIL 446 >gi|27904995|ref|NP_778121.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076735|sp|Q89A31|HSLU_BUCBP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|27904393|gb|AAO27226.1| ATP-dependent hsl protease ATP-binding subunit HslU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 444 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/443 (50%), Positives = 311/443 (70%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ+ AKRAVAIALRNRWRR +L +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVKELDRFIIGQKKAKRAVAIALRNRWRRMKLNKELRYEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTEIGYVG+ V+ IIRDL D AI +++ + + +++A Sbjct: 64 TEIARRLAKLAKAPFIKVEATKFTEIGYVGKEVDSIIRDLTDSAIKMIKSTAIKKNKKRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD LV + T ++FRKKLR+G + DKEI+I VA T Sbjct: 124 KELAEERILDVLVPTIKNNWKKTNTNNNSEATLQIFRKKLREGTLDDKEIEINVAVTPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 I PG + L LF + G+ R K ++ ++ L+ +E+ +LI+++ + + Sbjct: 184 IEIMAPPGMEEL-TNQLQSLFQNLTGNKRNIK-KLKIKDAMKLLIEEEAAKLINLEELKK 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE +GIVF+DE DKI +G +SREGVQRDLLPL+EG +VSTK+G + TDH Sbjct: 242 EAIYAVEQHGIVFIDEIDKICRNHGSSGPDISREGVQRDLLPLIEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L +DF LILT+ ++++ +QY+ L+KT Sbjct: 302 ILFIASGAFQVSTPSDLIPELQGRLPIRVELQALTINDFELILTEPKASVTMQYQALLKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVI 414 E + ++FT++ I +A+ A +N ++ +IGARRL TV+ER++EDISF ASD + E T+ I Sbjct: 362 EKVKINFTKEGIRHIAEAAWKVNESMENIGARRLHTVLERLMEDISFHASDHRNEITITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV+ H+ S D+ FIL Sbjct: 422 DEKYVQKHLDKLISNEDLSRFIL 444 >gi|126666728|ref|ZP_01737705.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17] gi|126628773|gb|EAZ99393.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17] Length = 442 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/441 (49%), Positives = 308/441 (69%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++I+GQQ+AKRAVAIALRNRWRR QL +LR+E+ PKNIL++GPTGVGK Sbjct: 4 LTPREIVLELDKHIVGQQEAKRAVAIALRNRWRRMQLNDELREEISPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDL D+A+ ++RE A Sbjct: 64 TEIARRLAKLADAPFLKVEATKFTEVGYVGRDVDSIIRDLADMAVKMLREQEMKRHENSA 123 Query: 127 SINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AE+RILDAL+ N TR++FRKKLR+GE+ DKEI+I++ ++S+ + Sbjct: 124 LDAAEDRILDALLPPARDFNDDNKPREDSATRQMFRKKLREGELDDKEIEIDLRNSSAGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F+ M ++K +M V + +E+ +L++ + + + Sbjct: 184 EIMAPPGMEEM-TNQLQSMFAN-MSQDKRKTRKMRVADALRRVKDEEAAKLVNEEEIKQK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++Q VE GIVFLDE DK+ R + VSREGVQRDLLPL+EGS+V+TKYG+I TDHI Sbjct: 242 AVQAVEQNGIVFLDEIDKVAKRSENSSSDVSREGVQRDLLPLIEGSTVTTKYGAIRTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+++P+DL+PE+QGR P+RV L +L +DF+ ILT+ +++L+ QY+ LM E Sbjct: 302 LFIASGAFHLTKPSDLIPELQGRLPIRVELHALTPNDFKRILTEPDASLVQQYEALMGAE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L FT+D+I LA+VA +N +IGARRL T++ER+LE +SF A D + + A Sbjct: 362 GLKLSFTDDAITRLAEVAWKVNENTENIGARRLHTMLERLLESLSFDAGDKITEEFEVTA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 EYV +G + D+ +IL Sbjct: 422 EYVEEKLGKLAEDEDLSRYIL 442 >gi|258620455|ref|ZP_05715493.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus VM573] gi|258625668|ref|ZP_05720547.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus VM603] gi|262166683|ref|ZP_06034420.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus VM223] gi|262170394|ref|ZP_06038072.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus MB-451] gi|258581906|gb|EEW06776.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus VM603] gi|258587334|gb|EEW12045.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio mimicus VM573] gi|261891470|gb|EEY37456.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus MB-451] gi|262026399|gb|EEY45067.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio mimicus VM223] Length = 443 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I V Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVTAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VID Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ FIL Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443 >gi|167856216|ref|ZP_02478952.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219871415|ref|YP_002475790.1| ATP-dependent protease ATP-binding subunit HslU [Haemophilus parasuis SH0165] gi|254802308|sp|B8F690|HSLU_HAEPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|167852671|gb|EDS23949.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219691619|gb|ACL32842.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis SH0165] Length = 440 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/443 (51%), Positives = 313/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEELRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL +V++ +VR+ ++ R Sbjct: 61 GKTEIARRLAKLADAPFIKVEATKFTEVGYVGKEVDSIIRDLANVSMKLVRQQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ ++TR++FRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNTSTRQIFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSLNK DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLNKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+D I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + +VI Sbjct: 358 TEGVDIEFTKDGISRIAESAFRVNEKTENIGARRLHTVLERLMDSISFDASERSGEKIVI 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D +YV + D D+ FIL Sbjct: 418 DEKYVSDALNDVVENEDLSRFIL 440 >gi|85711522|ref|ZP_01042580.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica OS145] gi|85694674|gb|EAQ32614.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica OS145] Length = 447 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/447 (51%), Positives = 313/447 (70%), Gaps = 17/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV EL+R+IIGQ AKRAVA+ALRNRWRR QL DLR+E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVDELNRHIIGQDKAKRAVAVALRNRWRRMQLDDDLRNEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ +E II+DL DVA+ RE +VR + Sbjct: 63 KTEIARRLAKLARAPFIKVEATKFTEVGYVGKEIESIIKDLTDVAVKQKREEMMQKVRYR 122 Query: 126 ASINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIEVA 170 A AE+RILD L+ TS ++R+VFRKKLR+G + DKEI+I++A Sbjct: 123 AEEAAEDRILDVLLPPARTSGGWGAEEDKGNDEQRHSRQVFRKKLREGSLDDKEIEIDLA 182 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + PG + L +F MG+ + KK ++ ++ + +L+ +E+ +L++ Sbjct: 183 MPQMGVEIMAPPGMEEM-TSQLQNMFQN-MGNDKTKKRKIKIKDAFKQLIDEEAAKLLNP 240 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 D V +I+ VE GIVFLDE DKI R +G VSREGVQRDLLPLVEG++V+TK+G Sbjct: 241 DEVKEAAIESVEQNGIVFLDEIDKICKRGDSSGPDVSREGVQRDLLPLVEGTTVNTKHGM 300 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TDHILFIASGAF +S+P+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK Sbjct: 301 IRTDHILFIASGAFQMSKPSDLIPELQGRLPIRVELDALTSGDFVRILTEPNASLTTQYK 360 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG+ + FT+D I +A++A ++N T +IGARRL TV+ER++E+ISF+A+D + Sbjct: 361 ALLNTEGVEIGFTDDGIQRIAEIAFHVNETTENIGARRLHTVLERLMEEISFNATDHSGE 420 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ +DA YV HIG+ + D+ FIL Sbjct: 421 SISVDASYVDKHIGELSQDEDLSRFIL 447 >gi|260770842|ref|ZP_05879771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio furnissii CIP 102972] gi|260614079|gb|EEX39269.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio furnissii CIP 102972] Length = 443 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ S+TR+ FRKKLR+G++ DKEI++ VA Sbjct: 124 EEQAEERILDALLPPARDAWGEAEHNDTASSTRQTFRKKLREGKLDDKEIEVNVAVAQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF +G KKK ++ ++ + L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQN-LGGDTKKKRKLKIKDAFKALTEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+V+TK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVTTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVARPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYMALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TVMER++++ISF A++ ++ ID Sbjct: 362 EEVDIAFTEDGIKQIADAAWQVNETTENIGARRLHTVMERLMDEISFDATEKAGASLTID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 + YVR +G+ + D+ FIL Sbjct: 422 SAYVRAKLGELVEDEDLSRFIL 443 >gi|255659258|ref|ZP_05404667.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida DSM 20544] gi|260848713|gb|EEX68720.1| ATP-dependent protease HslVU, ATPase subunit [Mitsuokella multacida DSM 20544] Length = 468 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/457 (49%), Positives = 310/457 (67%), Gaps = 29/457 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV ELDRYI+GQ +AKR+VAIALRNRWR +QL +++E++PKNI+++G TGVGKT Sbjct: 14 TPREIVEELDRYIVGQDEAKRSVAIALRNRWRSRQLTGAMKEEVIPKNIMMIGSTGVGKT 73 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA+L APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++R+ R +EV+++A Sbjct: 74 EIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEAAVRMIRQERLEEVQDKAK 133 Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161 AEERILD V + S RE RK+L GE+ Sbjct: 134 EQAEERILDVFVPEPKKSQNPLGRLFGGDDEEKDKPAEEPKKYQAGREWVRKRLEKGELE 193 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 D+ I+I+V +T + G + G+ NL ++ +M R KK +++V + Sbjct: 194 DELIEIDVEETRRPMVGM-FSGSSLEGMGDNLQDMIGNIMPK-RHKKRKVTVAQARKIFT 251 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 ++E+ +LIDM+ V +++++ E GIVFLDE DK+ + + +G VSREGVQRD+LP+VE Sbjct: 252 QEEAGKLIDMEAVAEEAVKVTEYSGIVFLDEIDKVAVKGNSSGADVSREGVQRDILPIVE 311 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS VSTKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF ILT+ Sbjct: 312 GSQVSTKYGPVRTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELKSLRKEDFERILTE 371 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ LI QY+ L+ TEGI L F D+I +A++A +N DIGARRL T++E+VLEDI Sbjct: 372 PQNALIKQYEALLATEGITLSFKPDAISRIAELACEVNEQAEDIGARRLHTLLEKVLEDI 431 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A +L +K VVIDA YV + D D+ FIL Sbjct: 432 SFRAPELTDKDVVIDAAYVNERLADIVVNRDLSQFIL 468 >gi|242280398|ref|YP_002992527.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio salexigens DSM 2638] gi|259491369|sp|C6C0P1|HSLU_DESAD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|242123292|gb|ACS80988.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio salexigens DSM 2638] Length = 457 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/457 (48%), Positives = 315/457 (68%), Gaps = 27/457 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELD++IIGQ DAKR VAIA+RNRWRRQQLP +LRDE+ PKNI+++GPTGVG Sbjct: 3 NLTPREIVSELDKFIIGQSDAKRMVAIAMRNRWRRQQLPPELRDEIAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAG PF KVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+ ++V+ + Sbjct: 63 KTEIARRLAKLAGCPFFKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRKEEMEKVKVK 122 Query: 126 ASINAEERILDALVGKTAT------------------------SNTREVFRKKLRDGEIS 161 A +AE+ +LD L+ + S+TRE FRK R+G++ Sbjct: 123 AEKHAEDALLDILLPSSKPKQPGMGFFNPAAPEEQEEQPSADQSSTREKFRKMWREGKLD 182 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 D+E++IEV+ + +PG +G + ++++ K M +KK ++ +++ Y L++ Sbjct: 183 DREVEIEVSVQGGGVEIMSMPGMEDMG-MQVNDMIGK-MFPNKKKMRKVKIREAYDILIQ 240 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVE 280 ESD+LIDMD V + + VE GI+FLDE DKI G G VSREGVQRDLLP+VE Sbjct: 241 QESDKLIDMDNVAELARERVEQGGILFLDEIDKIAGNQEGGGSANVSREGVQRDLLPVVE 300 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G V+TKYG + TDHILFI++GAF ++P+DL+PE+QGRFP+RV L SL+K DF ILT+ Sbjct: 301 GCVVNTKYGMVKTDHILFISAGAFSYAKPSDLIPELQGRFPLRVELTSLDKDDFYRILTE 360 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ L +QYK L++TE + +DF+ ++++ +A A N +IGARRL T+ME++L D+ Sbjct: 361 PQNALTVQYKALLETENLNIDFSREALEEVALNAQKFNEETENIGARRLYTIMEKILSDL 420 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A D ++VID EYV+ + D + D+ +IL Sbjct: 421 SFEAPDRSGDSIVIDKEYVQKQLQDVTEDRDLSRYIL 457 >gi|167627816|ref|YP_001678316.1| ATP-dependent protease ATP-binding subunit HslU [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668377|ref|ZP_04755955.1| ATP-dependent protease ATP-binding subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876910|ref|ZP_05249620.1| ATP-dependent protease ATP-binding subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189043911|sp|B0TZG2|HSLU_FRAP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|167597817|gb|ABZ87815.1| ATP-dependent protease HslVU, ATPase subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842931|gb|EET21345.1| ATP-dependent protease ATP-binding subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 455 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/457 (49%), Positives = 313/457 (68%), Gaps = 24/457 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P+ IV EL+R+IIGQ DAK+AVAIALRNRWRR QL ++R E+ PKNIL++GPT Sbjct: 1 MTQVMTPKTIVHELERHIIGQNDAKKAVAIALRNRWRRMQLDDEMRQEVTPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDLV+ A+ + RE + +V Sbjct: 61 GVGKTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVESIIRDLVETAVKMKREEAKQKV 120 Query: 123 REQASINAEERILDALV----------------------GKTATSNTREVFRKKLRDGEI 160 E+A+I AE+RILD L+ K + TRE+FRKK+++GE+ Sbjct: 121 TEKAAILAEDRILDVLIPPARASESKVGFANEPAEDAQSKKEKENKTREIFRKKIQNGEL 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 +DKEI+IEV+ I PG + L +LFS + S +KK +M ++ + Sbjct: 181 NDKEIEIEVSVAPKSIGVMGPPGMEDM-TNQLQDLFSS-LSSDKKKTKKMRIKDAIKLVK 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +E+ +LI+ + + +++ VE GIVFLDE DK+ + +G VSREGVQRDLLPLVE Sbjct: 239 DEEAAKLINEEDIKARALESVEQNGIVFLDEIDKVCKKSGTSGADVSREGVQRDLLPLVE 298 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+VSTKYG I TDHILFIASGAFHV++P+DL+PE+QGR P+RV LKSL DF IL + Sbjct: 299 GSTVSTKYGMIKTDHILFIASGAFHVAKPSDLIPELQGRLPIRVELKSLEIEDFVRILKE 358 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 + +++ QY LMKTEG+ L F ED+I +A+++ +N V +IGARRL TVMER+LE+I Sbjct: 359 PDCSILKQYIALMKTEGVELSFEEDAIRKIAEISFQVNEEVENIGARRLHTVMERLLEEI 418 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A DL+ K++ I +Y+ + ++ +IL Sbjct: 419 SFDAPDLENKSINITTDYINEKLSGLVKNKNLSQYIL 455 >gi|261211240|ref|ZP_05925529.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. RC341] gi|260839741|gb|EEX66352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. RC341] Length = 444 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/443 (51%), Positives = 310/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEER+LDAL+ + +S TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPARDAWGQAEQKEENSSTTRQVFRKKLREGQLNDKEIEINVATPQM 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L LF + G +KK+ M ++ L+ +E+ +L++ + + Sbjct: 184 GVEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRK-MKIKDALKALVEEEAAKLVNQEELK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMK Sbjct: 302 HILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSDDFKRILTEPKASLTEQYVALMK 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TE + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VI Sbjct: 362 TEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA YV+ +G+ + D+ FIL Sbjct: 422 DAAYVKARLGELVEDEDLSRFIL 444 >gi|317152586|ref|YP_004120634.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio aespoeensis Aspo-2] gi|316942837|gb|ADU61888.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio aespoeensis Aspo-2] Length = 459 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/459 (49%), Positives = 314/459 (68%), Gaps = 29/459 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELDRYIIGQ AKR VAIA+RNRWRRQQL +LRD++ PKNI+L+GPTGVG Sbjct: 3 NLTPREIVSELDRYIIGQDAAKRMVAIAMRNRWRRQQLDPELRDDIAPKNIILMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+ ++VR + Sbjct: 63 KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122 Query: 126 ASINAEERILDALVGKTATSN-------------------------TREVFRKKLRDGEI 160 A NAEER+LD L+ ++ TRE FR+ R G++ Sbjct: 123 AEKNAEERLLDLLLPRSKPGGGQAGFFMGSQSGEIEEKQETGRDDATREKFRQMFRAGQL 182 Query: 161 SDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 ++E+++EV + + + IPG +G NL F+ + S RK++ +M +++ Y L Sbjct: 183 DEREVELEVRVQSGAQVEIMAIPGMEGMGS-NLQSAFANMFPSKRKQR-KMKIREAYLVL 240 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPL 278 + +E+++LID D V+ + + VE GI+FLDE DKI +R D G VSREGVQRDLLP+ Sbjct: 241 VDEEAEKLIDPDAVNELARERVEQQGILFLDELDKIASRHDQAGGADVSREGVQRDLLPV 300 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R L SL+K +F IL Sbjct: 301 VEGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREALDSLHKEEFYRIL 360 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T+ + L +QYK L+ TEG+ +DFT ++++ +A A +N +IGARRL T+ME++L Sbjct: 361 TEPRNALTVQYKALLGTEGVSVDFTREALEEIAATAEKINEETENIGARRLYTIMEKILA 420 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++S+ A D TVVID +YV +GD D+ +IL Sbjct: 421 NLSYEAPDKSGVTVVIDRDYVLEQLGDVVENRDLSRYIL 459 >gi|124268574|ref|YP_001022578.1| ATP-dependent protease ATP-binding subunit HslU [Methylibium petroleiphilum PM1] gi|124261349|gb|ABM96343.1| heat shock protein HslVU, ATPase subunit HslU [Methylibium petroleiphilum PM1] Length = 448 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/450 (50%), Positives = 310/450 (68%), Gaps = 21/450 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELDR+I+GQQDAKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPQEIVSELDRHIVGQQDAKRAVAIALRNRWRRQQVDDRLRPEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDLVD+A+ RE+ R +A Sbjct: 61 TEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLVDLAVKQTREAAIRAHRVRA 120 Query: 127 SINAEERILDALVGKTAT------------------SNTREVFRKKLRDGEISDKEIDIE 168 AEERILD L+ A S R+ FRK+LR+G + DKEI++E Sbjct: 121 EDAAEERILDVLLPPPAHAGAGFGLSTSSPAPAPADSTARQTFRKRLREGTLDDKEIELE 180 Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 +A+ + + PG + L +F+ +G R+K ++ + + L+ +E+ +L+ Sbjct: 181 LAEPRAAVELLGPPGMEDMA-EQLKGMFAS-LGQTRRKTRKLKIAEALKLLVDEEAAKLV 238 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 + D + ++ E GIVF+DE DK+ +R D +G VSR+GVQRDLLPLVEG++VSTK Sbjct: 239 NEDEIKTQALASAEQNGIVFIDEIDKVTSRGDGASGAEVSRQGVQRDLLPLVEGTTVSTK 298 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 +G++ TDHILFIASGAFH++RP+DL+PE+QGRFP+RV L SL DF ILT T ++L+ Sbjct: 299 HGTVKTDHILFIASGAFHLARPSDLIPELQGRFPIRVELGSLRVEDFEAILTQTHASLVR 358 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ L+ TEG+ LDF + + LA +A ++N +IGARRL TVMER+L+++SF A +L Sbjct: 359 QYQALLDTEGVRLDFRPEGVRRLAQIAFDVNERTENIGARRLSTVMERLLDEVSFDAPNL 418 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +T+ IDA YV +G + D+ FIL Sbjct: 419 GGQTIAIDAAYVDRKLGALAVDEDLSRFIL 448 >gi|326796962|ref|YP_004314782.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas mediterranea MMB-1] gi|326547726|gb|ADZ92946.1| ATP-dependent hsl protease ATP-binding subunit hslU [Marinomonas mediterranea MMB-1] Length = 441 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/440 (51%), Positives = 315/440 (71%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PRE V+ LD++IIGQQ AKRAVAIALRNRWRR QLP D+R E+ PKNIL++GPTGVGK Sbjct: 4 MTPRETVNALDQHIIGQQSAKRAVAIALRNRWRRMQLPEDMRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+ APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE +R +A Sbjct: 64 TEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETTRMRHKA 123 Query: 127 SINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 AE+RILDAL+ SNTR++FRKKLR+G++ DKEIDI+V++T + Sbjct: 124 EDAAEDRILDALLPPARGGDPELNNESNTRQIFRKKLREGQLDDKEIDIDVSETPVGVEI 183 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L +FS MG+ RKK+ ++ V+ ++ +E+ +L++ D + ++ Sbjct: 184 MAPPGMEEM-TSQLQNMFSS-MGNDRKKRRKLKVKDALRQVRDEEAAKLVNEDELKARAV 241 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 + VE GIVFLDE DK+ + VSREGVQRDLLPLVEG +V+TKYG I TDHILF Sbjct: 242 EAVEQNGIVFLDEIDKVAKSGERSSGEVSREGVQRDLLPLVEGCTVNTKYGMIKTDHILF 301 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+++P+DL+PE+QGR P+RV L +L DF+ IL + ++L QY L KTE I Sbjct: 302 IASGAFHLTKPSDLIPELQGRLPIRVELDALTVEDFKRILVEPSASLTKQYVALAKTENI 361 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417 ++FT++ I +A++A +N TV +IGARRL TV+ER+LE++S+SASD+ ++ V I AE Sbjct: 362 DINFTDEGITRIAEIACQVNETVENIGARRLHTVLERLLEEVSYSASDMPDDQQVNITAE 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV +G+ + D+ +IL Sbjct: 422 YVDEQLGEVVKDEDLSQYIL 441 >gi|221133925|ref|ZP_03560230.1| ATP-dependent protease ATP-binding subunit [Glaciecola sp. HTCC2999] Length = 442 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/441 (49%), Positives = 306/441 (69%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQQDAKRAV+IALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQQDAKRAVSIALRNRWRRMQLSEDLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKEQATAKVKFRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ +T +TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 124 EEAAEERILDVLIPPPKDIFGDNQETDNKSTRQAFRKKLREGKLDDKEIEIDIAMPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + G+ KKK + ++ + L+ +E+ +L++ + + ++ Sbjct: 184 EIMAPPGMEDM-TNQLQGMFQNLSGNQSKKKT-LPIKDAFKYLVEEEAAKLVNQEDLKQE 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ +E GIVF+DE DKI R+ + VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAF +S+P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY L+ TE Sbjct: 302 LFITSGAFQMSKPSDLIPELQGRLPIRVELQALEVKDFVRILTEPHASLTEQYVALLGTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ ++FT+D I +A+ A +N +IGARRL TVMER++EDIS+ AS+ Q + + +D Sbjct: 362 GVSVNFTQDGIQRIAEAAWQVNERTENIGARRLHTVMERLMEDISYDASEKQGEAIEVDK 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ D+ +IL Sbjct: 422 DYVNRHLELLVDNEDLSRYIL 442 >gi|254427703|ref|ZP_05041410.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp. DG881] gi|196193872|gb|EDX88831.1| heat shock protein HslVU, ATPase subunit HslU [Alcanivorax sp. DG881] Length = 447 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 231/446 (51%), Positives = 319/446 (71%), Gaps = 15/446 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IVSEL+R+I+GQ AK+AVA+ALR RWRR LPA++R E+ PKNIL++GPTGVG Sbjct: 3 SLTPKDIVSELNRHIVGQDAAKKAVALALRTRWRRMLLPAEMRAEVAPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+++AI ++R+ V Q Sbjct: 63 KTEIARRLAKLADAPFIKVEATKFTEVGYVGRDVESIIRDLMEMAIKLLRDKEIARVGSQ 122 Query: 126 ASINAEERILDALV-------GKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILDAL+ G T S TR++FRKKLR+GE+ DKEID++VA Sbjct: 123 ADDAAEERILDALLPAARAEDGSTNDNTDSKTRQIFRKKLREGELDDKEIDVDVASQPPG 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L ++FSK+ G+ ++K ++ V++ Y + +E+ R ++ D + Sbjct: 183 VDIMAPPGMEEM-TSQLQQMFSKMGGNQQRKSQKLKVREAYRLIRDEEAARFVNEDELKV 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I +VEN GIVF+DE DK+ R G G VSREGVQRDLLPL+EGS+VSTKYG + TDH Sbjct: 242 QAIDVVENNGIVFIDEIDKVAKRGEGGGTDVSREGVQRDLLPLIEGSTVSTKYGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+SRP+DL+PE+QGR P+RV L L+ DF+ ILT+ + +L QYK L++T Sbjct: 302 ILFIASGAFHLSRPSDLIPELQGRLPIRVELSPLSPDDFQRILTEPKCSLTEQYKALLET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKT 411 EG+ L+ T+D I +A+VA +N +IGARRL TV+E++LE+ISF A L +K Sbjct: 362 EGLNLEITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKP 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 +V+DAE V ++G+ + D+ +IL Sbjct: 422 LVLDAEAVDRYLGELADDEDLSRYIL 447 >gi|319764382|ref|YP_004128319.1| heat shock protein hslvu, atpase subunit hslu [Alicycliphilus denitrificans BC] gi|330826601|ref|YP_004389904.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus denitrificans K601] gi|317118943|gb|ADV01432.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus denitrificans BC] gi|329311973|gb|AEB86388.1| heat shock protein HslVU, ATPase subunit HslU [Alicycliphilus denitrificans K601] Length = 434 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/436 (52%), Positives = 311/436 (71%), Gaps = 7/436 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELD +I+GQ AKRAVAIALRNRWRRQQ+ + LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPQEIVSELDNHIVGQAAAKRAVAIALRNRWRRQQVDSGLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+VA+ RE+ +VR +A Sbjct: 61 TEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVEVAVKQTREADMKKVRARA 120 Query: 127 SINAEERILDALV-----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 AEERILD L+ G+++ R+VFRKKLR+G++ DKEI+I+VAD + Sbjct: 121 EDAAEERILDVLIPPPRGGESSDGTARQVFRKKLREGQLDDKEIEIDVADARPQLEIMG- 179 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 P G L +FS +G R+K ++ + + L +E+ +L++ + V ++ Sbjct: 180 PQGMEEMAEQLRGMFSH-LGQERRKTRKLKIAEALRLLTDEEAAKLVNEEEVKTRAVSNA 238 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GIVF+DE DK+ AR G VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIAS Sbjct: 239 EQNGIVFIDEIDKVAARQEAGGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIAS 298 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH+++P+DL+PE+QGRFP+RV L SL+ DF ILT T ++L+ QY+ L+ TEG+ L+ Sbjct: 299 GAFHLAKPSDLIPELQGRFPIRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALE 358 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT + I LA +A ++N +IGARRL TVMER+L+++SF A+ L +TVV+DA+YV Sbjct: 359 FTPEGITRLAHIAYDVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVVVDADYVNA 418 Query: 422 HIGDFPSETDMYHFIL 437 + + D+ +IL Sbjct: 419 RLQSLSQDEDLSRYIL 434 >gi|260877941|ref|ZP_05890296.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus AN-5034] gi|308089756|gb|EFO39451.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus AN-5034] gi|328471827|gb|EGF42704.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio parahaemolyticus 10329] Length = 443 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/442 (51%), Positives = 305/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ K TSNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++IS+ A++ VID Sbjct: 362 ENVDIEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD D+ FIL Sbjct: 422 AAYVKERLGDTIENEDLSRFIL 443 >gi|319945236|ref|ZP_08019498.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia mirabilis ATCC 51599] gi|319741806|gb|EFV94231.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lautropia mirabilis ATCC 51599] Length = 450 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/451 (50%), Positives = 310/451 (68%), Gaps = 22/451 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+EIVSELD++IIGQ AKRAVAIALRNRWRRQQ+ LR E++PKNIL++GPTGVG Sbjct: 3 QMTPQEIVSELDKHIIGQDKAKRAVAIALRNRWRRQQVAEPLRHEIVPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVG++V+ IIRDL++ AI R+ + V + Sbjct: 63 KTEIARRLARLANAPFIKIEATKFTEVGYVGKDVDSIIRDLMEAAIKEERDRAKQRVDAR 122 Query: 126 ASINAEERILDALVGKTAT-------------------SNTREVFRKKLRDGEISDKEID 166 A AEER+LDAL+ +A S R+ FRK+LR+G++ DKEI+ Sbjct: 123 ARDLAEERVLDALLPSSAHQRAPTDYRDLEKPISTADDSVARQKFRKRLREGDLDDKEIE 182 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 I+VA +I P G L + + G R++K+R++ + L+ +E+ + Sbjct: 183 IDVAQPMPNIGIMG-PAGMEELTNQLQGMMQGLPGKTRQRKMRIA--EAMKLLVDEEAGK 239 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 L++ + + ++ VE GIVFLDE DKI R G VSR+GVQRDLLPLVEG++V+T Sbjct: 240 LVNDEEIKLTALANVEQNGIVFLDEIDKIAVRSGVQGGDVSRQGVQRDLLPLVEGTAVNT 299 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 +YG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DFR ILT+T+++L Sbjct: 300 RYGVVKTDHILFIASGAFHLSKPSDLVPELQGRFPIRVELSSLSVEDFRRILTETDASLT 359 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEGI LDF ED I+ LA+ A +N +IGARRLQTVMER+LE++SF Sbjct: 360 KQYQALLATEGITLDFREDGINKLAETAFRVNEGTENIGARRLQTVMERLLEEVSFQGDR 419 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TVVIDA +V +GD + D+ ++L Sbjct: 420 RSGETVVIDAAFVEERLGDIARDEDLSRYVL 450 >gi|15642669|ref|NP_232302.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229509799|ref|ZP_04399280.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae B33] gi|229516923|ref|ZP_04406369.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae RC9] gi|229606784|ref|YP_002877432.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio cholerae MJ-1236] gi|254851211|ref|ZP_05240561.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio cholerae MO10] gi|255744365|ref|ZP_05418317.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera CIRS 101] gi|262158525|ref|ZP_06029640.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae INDRE 91/1] gi|11133077|sp|Q9KNQ7|HSLU_VIBCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|9657268|gb|AAF95815.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229345986|gb|EEO10958.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae RC9] gi|229353273|gb|EEO18212.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae B33] gi|229369439|gb|ACQ59862.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae MJ-1236] gi|254846916|gb|EET25330.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio cholerae MO10] gi|255737890|gb|EET93283.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholera CIRS 101] gi|262029686|gb|EEY48335.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae INDRE 91/1] Length = 443 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VID Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ FIL Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443 >gi|270265177|ref|ZP_06193439.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia odorifera 4Rx13] gi|270040811|gb|EFA13913.1| ATP-dependent hsl protease ATP-binding subunit hslU [Serratia odorifera 4Rx13] Length = 444 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/443 (50%), Positives = 304/443 (68%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLDEMLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRLQSIEKNRTRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEERILDVLIPPAKNNWGQPEEHQEPSAARQAFRKKLREGQLDDKEIEIDLASAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G K + ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNLGGQKHKPR-KLKIKEAFKLLIEEEAAKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF + P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMG 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT + I +A+ A +N + +IGARRL TV+ER++EDIS+ AS++ +++ I Sbjct: 362 TEGVNIEFTAEGIRRIAEAAWQVNESTENIGARRLHTVLERLMEDISYDASEINGQSITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YVR H+ + ++ D+ FIL Sbjct: 422 DADYVRNHLDELVADEDLSRFIL 444 >gi|28897023|ref|NP_796628.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio parahaemolyticus RIMD 2210633] gi|153840198|ref|ZP_01992865.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio parahaemolyticus AQ3810] gi|260362284|ref|ZP_05775251.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus K5030] gi|260897599|ref|ZP_05906095.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus Peru-466] gi|260899529|ref|ZP_05907924.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus AQ4037] gi|31340157|sp|Q87T21|HSLU_VIBPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|28805231|dbj|BAC58512.1| protease HslVU, ATPase subunit HslU [Vibrio parahaemolyticus RIMD 2210633] gi|149746140|gb|EDM57270.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio parahaemolyticus AQ3810] gi|308087499|gb|EFO37194.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus Peru-466] gi|308108759|gb|EFO46299.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus AQ4037] gi|308111318|gb|EFO48858.1| ATP-dependent protease HslVU, ATPase subunit [Vibrio parahaemolyticus K5030] Length = 443 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ K TSNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDSWGQVEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++IS+ A++ VID Sbjct: 362 EDVDIEFTEDGITRIAEAAWTVNETTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD + D+ FIL Sbjct: 422 AAYVQARLGDTIEDEDLSRFIL 443 >gi|78357057|ref|YP_388506.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123727691|sp|Q30ZT5|HSLU_DESDG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|78219462|gb|ABB38811.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 449 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/448 (49%), Positives = 309/448 (68%), Gaps = 19/448 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD+YIIGQ+ AKR VA+ALRNRWRRQQL +RDE+ PKNI+++GPTGVGK Sbjct: 4 LTPREIVSELDKYIIGQEQAKRMVAVALRNRWRRQQLEPAIRDEVAPKNIIMMGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARL+ +PF+KVE TKFTE+GYVGR+VE +IRDL+++++N+VRE RD V+ +A Sbjct: 64 TEIARRLARLSSSPFLKVEATKFTEVGYVGRDVESMIRDLMEISVNLVREEERDSVKTRA 123 Query: 127 SINAEERILDALVGKT---------------ATSNTREVFRKKLRDGEISDKEIDIEVA- 170 AEER+LD L+ + NTR R R+G + +E+++EV Sbjct: 124 EAAAEERLLDLLLPSSPAVNTSFDTPQTPAGGAENTRNKLRTLWREGRLDHREVEMEVEM 183 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + +PG +G ++FSK RK++ RM V Y L+++ES+RLID Sbjct: 184 QSGPQMDVMTMPGMEDIGS-QFKDMFSKAFPPKRKRR-RMKVGDAYAILLQEESERLIDH 241 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYG 289 + V + + E GI+FLDE DKI + G +SREGVQRDLLP+VEGS+V+TKYG Sbjct: 242 EKVIELARERAEQTGIIFLDEIDKIASSQQGGKTADISREGVQRDLLPIVEGSAVNTKYG 301 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I+TDHILFI +GAFH S+P+DL+PE+QGRFP+RV L +L +F ILT+ ++ L +QY Sbjct: 302 IIHTDHILFIGAGAFHYSKPSDLIPELQGRFPLRVELTALGSKEFLRILTEPKNALTVQY 361 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 K L+ TEG+ +++TED+++A+AD A N +IGARRL T+ME++L D+SF A D Sbjct: 362 KALLATEGVQIEYTEDALEAVADFAQEANQETENIGARRLYTIMEKILADLSFEAPDKSG 421 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +VID EYVR H+ D + D+ +IL Sbjct: 422 ERIVIDREYVRQHLADITANRDLTRYIL 449 >gi|261491846|ref|ZP_05988425.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494683|ref|ZP_05991163.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309648|gb|EEY10871.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312501|gb|EEY13625.1| ATP-dependent protease ATP-binding subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 440 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/443 (51%), Positives = 311/443 (70%), Gaps = 13/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ+DAKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DV++ +VR+ ++ + Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLADVSMKLVRQQAVEKNKM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ ++TR+ FRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT+ I +A+ A +N +IGARRL TV+ER+++ ISF AS+ + + ++I Sbjct: 358 TEGVEIEFTKGGISRIAESAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIII 417 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D YV + D D+ FIL Sbjct: 418 DENYVSEALNDVVENEDLSRFIL 440 >gi|163803564|ref|ZP_02197432.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4] gi|159172651|gb|EDP57507.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. AND4] Length = 443 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 308/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ++AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQENAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K TSNTR+ FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQTFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ ++++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKMVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++IS+ A++ + VID Sbjct: 362 EEVDVEFTEDGITKIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKGGEKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD + D+ FIL Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443 >gi|301155383|emb|CBW14849.1| molecular chaperone and ATPase component of HslUV protease [Haemophilus parainfluenzae T3T1] Length = 444 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAKA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILDAL+ S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L +F + +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TVMER+++ ISF AS++ +TV ID Sbjct: 363 EGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVSEALGEVIENEDLSRFIL 444 >gi|156973044|ref|YP_001443951.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC BAA-1116] gi|166221616|sp|A7MWJ3|HSLU_VIBHB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|156524638|gb|ABU69724.1| hypothetical protein VIBHAR_00723 [Vibrio harveyi ATCC BAA-1116] Length = 443 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K TSNTR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERVLDALLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALTSNDFKRILTEPKASLTEQYIALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++IS+ A++ + VI+ Sbjct: 362 ESVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD + D+ FIL Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443 >gi|329298186|ref|ZP_08255522.1| ATP-dependent protease ATP-binding subunit HslU [Plautia stali symbiont] Length = 444 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 223/443 (50%), Positives = 307/443 (69%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AK+AVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRFIIGQDGAKKAVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRSQAIEKNKYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ S R+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EEMAEDRILDVLIPPAKNNWGQPEQSAEPSAARQSFRKKLREGQLDDKEIEIDLAAVPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF V+ P+DL+PE+QGR P+RV L++L +DF ILT+ +++ +QYK LM Sbjct: 302 HILFIASGAFQVASPSDLIPELQGRLPIRVELQALTVNDFERILTEPNASVTVQYKALMG 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FTED I +A+ A +N T +IGARRL TV+ER++EDIS+ ASD +++ I Sbjct: 362 TEGVNVEFTEDGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDRHGESITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DAEYV H+ + + D+ FIL Sbjct: 422 DAEYVGQHLDELVANEDLSRFIL 444 >gi|323700573|ref|ZP_08112485.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp. ND132] gi|323460505|gb|EGB16370.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio desulfuricans ND132] Length = 461 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/461 (48%), Positives = 316/461 (68%), Gaps = 31/461 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELD+YIIGQ+ AKR VAIA+RNRWRRQQL +LRDE+ PKNI+L+GPTGVG Sbjct: 3 NLTPREIVSELDKYIIGQEAAKRMVAIAMRNRWRRQQLDPELRDEIAPKNIILMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA PF KVE TKFTE+GYVGR+VE +IRDL+++ +N+VR+ ++VR + Sbjct: 63 KTEIARRLARLANCPFFKVEATKFTEVGYVGRDVESMIRDLMEIGVNMVRKEETEKVRIK 122 Query: 126 ASINAEERILDALV-GKTATSN------------------------TREVFRKKLRDGEI 160 A NAEER+LD L+ GK TRE FR+ R G++ Sbjct: 123 AEKNAEERLLDLLLPGKKPQPGGAMGFFQGGQDGAVEKIEPPREDATREKFRQMFRAGQL 182 Query: 161 SDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 ++E++++V + + + IPG +G NL FS M G++K +M ++ Y L Sbjct: 183 DEREVEMQVTVQSGASVEIMAIPGMEEMGS-NLQNAFSN-MFPGKRKARKMKIKDAYQLL 240 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLL 276 + +E+D+LID DTV+ + + VE GI+F+DE DKI +R G G VSREGVQRDLL Sbjct: 241 IDEEADKLIDPDTVNELARERVEQQGILFIDEMDKIASRHDQMGGGSADVSREGVQRDLL 300 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS V+TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+R L SL+K +F Sbjct: 301 PIVEGSVVNTKYGMVKTDHILFIAAGAFHFAKPSDLIPELQGRFPLREELASLHKEEFYK 360 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ + L +QYK L++TEG+ +D+T ++++ +A +A +N +IGARRL T+ME++ Sbjct: 361 ILTEPRNALTVQYKALLQTEGVTVDYTREALEEIAVMAEKINEETENIGARRLYTIMEKI 420 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L ++S+ A D VVID +YV +G+ + D+ +IL Sbjct: 421 LANLSYEAPDKSGSQVVIDRDYVVAQLGEVIEDRDLSRYIL 461 >gi|317401423|gb|EFV82056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Achromobacter xylosoxidans C54] Length = 444 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/442 (51%), Positives = 308/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P EIVSELD+YI+GQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Q Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124 Query: 126 ASINAEERILDALVGKTATSN----------TREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV S+ R+ FRK+LR+G+I D EI+IEVA T+ Sbjct: 125 AEDAAEDRILDALVPPPRGSSGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQTAPH 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ M +KK +M V++ + ++ +E+ + ++ + + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL DF IL+DT+++L QY LM T Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FTE+ + LA++A +N T +IGARRL TVME++L+++SF A+ +KTV ID Sbjct: 363 EDVQLEFTEEGVRRLAELAYEVNETTENIGARRLYTVMEKLLDELSFDATSSTDKTVKID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + S D+ ++L Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444 >gi|227082790|ref|YP_002811341.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2] gi|298500508|ref|ZP_07010312.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK 757] gi|254802322|sp|C3LSA3|HSLU_VIBCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|227010678|gb|ACP06890.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae M66-2] gi|297540677|gb|EFH76734.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MAK 757] Length = 443 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKMKIKD-ALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREG QRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGGQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ + VID Sbjct: 362 EQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +G+ + D+ FIL Sbjct: 422 AAYVKARLGELVEDEDLSRFIL 443 >gi|269959684|ref|ZP_06174064.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi 1DA3] gi|269835607|gb|EEZ89686.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio harveyi 1DA3] Length = 443 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDKAKRSVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ K TSNTR++FRKKLR+G++ DKEIDI+VA Sbjct: 124 EEQAEERILDTLLPPARDAWGQSEQKEDTSNTRQIFRKKLREGQLDDKEIDIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 SAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYIALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++++IS+ A++ + VI+ Sbjct: 362 ENVDVEFTEDGITQIAEAAWTVNETTENIGARRLHTVMERLMDEISYDATEKAGEKFVIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD + D+ FIL Sbjct: 422 AAYVKDRLGDTIEDEDLSRFIL 443 >gi|292492404|ref|YP_003527843.1| heat shock protein HslVU, ATPase HslU [Nitrosococcus halophilus Nc4] gi|291580999|gb|ADE15456.1| heat shock protein HslVU, ATPase subunit HslU [Nitrosococcus halophilus Nc4] Length = 441 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/440 (51%), Positives = 306/440 (69%), Gaps = 11/440 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV ELD+YIIGQ AKRAVA+ALRNRWRR+QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 LTPRQIVQELDKYIIGQTAAKRAVAVALRNRWRRRQLSEELRHEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL+D+AI + RE +VR++A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLLDIAIKMTREQEMAKVRDRA 123 Query: 127 SINAEERILDALV-------GKTAT--SNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AEERIL+AL+ G+T S+TR+ FRK LR+G++ D+EI++E+A S + Sbjct: 124 EDAAEERILNALLPPSRAMAGETTEGDSSTRQKFRKMLREGKLDDREIEVELAAVSMGVE 183 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PG + L +F + GS + + + + L +E+ +LI+ + + + Sbjct: 184 IMAPPGMEEM-TSQLQNMFQHLGGSRTRTRRLRVRE-AFKLLTEEEAGKLINDEDLKARA 241 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 + VE GIVFLDE DKI R +G VSREGVQRDLLP+VEGS+VSTK+G + TDHIL Sbjct: 242 LDNVEQNGIVFLDEMDKIAKRSEVSGTDVSREGVQRDLLPMVEGSTVSTKHGMVRTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH+++P+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QY L+KTEG Sbjct: 302 FIASGAFHLAKPSDLIPELQGRLPIRVELSALSVNDFVRILTEPSASLTEQYTALLKTEG 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L FTE+ I +A +A ++N +IGARRL TVMER+LE +SF A + V IDA Sbjct: 362 VSLYFTENGIARIAQIAWHVNERTENIGARRLHTVMERLLEGLSFEADAHASREVTIDAA 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV + D + D+ +IL Sbjct: 422 YVDTQLADLAQDEDLSRYIL 441 >gi|325577182|ref|ZP_08147666.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392] gi|325160764|gb|EGC72885.1| heat shock protein HslVU [Haemophilus parainfluenzae ATCC 33392] Length = 444 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 230/442 (52%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ++AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQKEAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRAKA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILDAL+ S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDTAEDRILDALLPPPKNQWGEVENHDTNSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G L +F + +GS + KK +M ++ L+ DE+ +LI+ + + + Sbjct: 184 GVEIMAPPGMEEMTNQLQSMF-QSLGSDKTKKRKMKIKDALKTLIDDEAAKLINPEELKQ 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+V+TK+G + TDH Sbjct: 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVNTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V+RP+DL+PE+QGR P+RV L +L DF ILT+ ++L QYK LM T Sbjct: 303 ILFIASGAFQVARPSDLIPELQGRLPIRVELSALTAEDFERILTEPNASLTEQYKALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D+I +A+ A +N +IGARRL TVMER+++ ISF AS++ +TV ID Sbjct: 363 EGVSIEFTQDAIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFDASEMDGQTVNID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV +G+ D+ FIL Sbjct: 423 AAYVIEALGEVIENEDLSRFIL 444 >gi|134297266|ref|YP_001121001.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia vietnamiensis G4] gi|166221471|sp|A4JIR3|HSLU_BURVG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|134140423|gb|ABO56166.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia vietnamiensis G4] Length = 447 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 219/446 (49%), Positives = 319/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQSKAKKAVAVALRNRWRRQQVTEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKEI++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S+ + PG + + +FS +GSG+K++ ++ +Q+ L +E+ ++++ + Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIQEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + LDF D I LA++A +N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLDFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAQYVDRALGEVSQDEDLSRYVL 447 >gi|239994471|ref|ZP_04714995.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii ATCC 27126] Length = 442 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 229/441 (51%), Positives = 309/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+ +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFRA 123 Query: 127 SINAEERILDALVG--KTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ + A N TR+ FRKKLR G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLLPPPEDAWGNKENVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + GS +KKK ++ +++ + L+ +E+ RL++ + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKEK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI R+ + VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 242 AIESVEQHGIVFIDEIDKICKREGNSSADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L QY LMKTE Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTHQYIALMKTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ + F + I +A+ A +N +IGARRL TV+ER++EDISF AS+ ++ VIDA Sbjct: 362 GVDISFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ D+ FIL Sbjct: 422 DYVNSHLETLVDNEDLSRFIL 442 >gi|322834997|ref|YP_004215024.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602] gi|321170198|gb|ADW75897.1| heat shock protein HslVU, ATPase subunit HslU [Rahnella sp. Y9602] Length = 444 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/443 (50%), Positives = 303/443 (68%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSYIIGQDKAKRAVAIALRNRWRRMQLDEALRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAVKMVRLQSIEKNRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQPDEAQEPSAARQNFRKKLREGQLDDKEIEISLASGPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + MG+ ++K ++ +++ L+ +E+ +L++ + + Sbjct: 184 VEIMSPPGMEEM-TNQLQSMF-QSMGAQKQKPRKLKIKEALKLLIEEEAAKLVNPEDLKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGGQSSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF + P+DL+PE+QGR P+RV L++L+ DF ILT+ ++L QYK LM Sbjct: 302 HILFIASGAFQTASPSDLIPELQGRLPIRVELQALSTEDFERILTEPSASLTHQYKALMA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ +DFT D I +A+ A +N T +IGARRL TV+ER++EDIS+ AS+ ++ I Sbjct: 362 TEGVTIDFTADGIRRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASESNGISINI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YVR H+ ++ D+ FIL Sbjct: 422 DADYVRSHLDQLVADEDLSRFIL 444 >gi|218778264|ref|YP_002429582.1| ATP-dependent protease ATP-binding subunit HslU [Desulfatibacillum alkenivorans AK-01] gi|226704520|sp|B8FH26|HSLU_DESAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|218759648|gb|ACL02114.1| heat shock protein HslVU, ATPase subunit HslU [Desulfatibacillum alkenivorans AK-01] Length = 457 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 230/457 (50%), Positives = 306/457 (66%), Gaps = 27/457 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + PREIV ELD+YIIGQ AKR VAIALRNRWRR+Q+P DLRDE+ PKNI+L+GPTGVG Sbjct: 3 DLKPREIVQELDKYIIGQDHAKRFVAIALRNRWRRRQVPQDLRDEIAPKNIILIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA PF+KVE TKFTE+GYVGR+VE +IRDLV+V +N+VRE DEV Sbjct: 63 KTEISRRLAKLADVPFLKVEATKFTEVGYVGRDVESMIRDLVEVTVNMVREKEEDEVALP 122 Query: 126 ASINAEERILDALV-----------------------GKTATSNTREVFRKKLRDGEISD 162 A AEERILD L+ G + +TRE RK L G+ D Sbjct: 123 AMKAAEERILDILLPPRRETQPFADAEGETTLEIVTRGDSNQDSTREKLRKMLHSGKFDD 182 Query: 163 KEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 + +D+E+ + ++ + F G VG N ++ +M KK+ ++ V + L + Sbjct: 183 RYVDLEINERNTPVVEIFSNMGMEEVG-FNFKDMLGGLMPKNTKKR-KVKVSEAMEILTQ 240 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280 E+ LIDM+ V + ++ VE GI+FLDE DKI V G G VSREGVQRDLLP+VE Sbjct: 241 QEAQGLIDMEKVVKKALSRVEESGIIFLDEIDKIAVGGGKGQGPDVSREGVQRDLLPIVE 300 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++V+TKYG + TDHILFIASGAFH+++P+DL PE+QGRFP+RV L SL + DF ILT+ Sbjct: 301 GTTVNTKYGMVKTDHILFIASGAFHMTKPSDLTPELQGRFPIRVELDSLTEHDFMRILTE 360 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ ++LQY+EL+KTEG+ L FT+DS+ +A +A +N +IGARRL TVME +LEDI Sbjct: 361 PKNAIMLQYQELLKTEGVELVFTQDSVAEIASIAKEVNDRTENIGARRLHTVMECLLEDI 420 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + A ++ EK + I AE VR + + D+ +IL Sbjct: 421 LYDAPEVPEKKITIGAEMVRAKLESIKEDEDLSRYIL 457 >gi|86147299|ref|ZP_01065613.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218710819|ref|YP_002418440.1| ATP-dependent protease ATP-binding subunit HslU [Vibrio splendidus LGP32] gi|254802323|sp|B7VLM7|HSLU_VIBSL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|85834864|gb|EAQ53008.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218323838|emb|CAV20199.1| ATP-dependent hsl protease ATP-binding subunit hslU [Vibrio splendidus LGP32] Length = 446 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 227/445 (51%), Positives = 310/445 (69%), Gaps = 16/445 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYRA 123 Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172 AEERILDAL+ T +SNTR++FRKKLR+G++ DKEI+++VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + PG + L +F + G +KK+ +M ++ + L +E+ +L++ + Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGDTKKKR-KMKIKDAFKALTEEEAAKLVNQEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +I EN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + Sbjct: 242 LKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY L Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIAL 361 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 MKTE + ++FTED I+ +AD A +N T +IGARRL TVMER++++ISF A+D + Sbjct: 362 MKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSKL 421 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 VID YV +G+ + D+ FIL Sbjct: 422 VIDEAYVISKLGELVEDEDLSRFIL 446 >gi|269964741|ref|ZP_06178979.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio alginolyticus 40B] gi|269830640|gb|EEZ84861.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Vibrio alginolyticus 40B] Length = 443 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 307/442 (69%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + D+V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMDKVKFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ +S+TR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKRKLKIKD-AMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N + +IGARRL TVMER++++IS+ A++ VID Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 + YV+ +GD + D+ FIL Sbjct: 422 SAYVKARLGDTIEDEDLSRFIL 443 >gi|152998125|ref|YP_001342960.1| ATP-dependent protease ATP-binding subunit HslU [Marinomonas sp. MWYL1] gi|226704529|sp|A6W2U6|HSLU_MARMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|150839049|gb|ABR73025.1| heat shock protein HslVU, ATPase subunit HslU [Marinomonas sp. MWYL1] Length = 440 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 229/440 (52%), Positives = 310/440 (70%), Gaps = 10/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PRE V+ LD +IIGQQ AKRAVAIALRNRWRR QLP ++R E+ PKNIL++GPTGVG Sbjct: 3 SMTPRETVNALDNHIIGQQKAKRAVAIALRNRWRRMQLPEEMRAEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDLV++AI ++RE ++R + Sbjct: 63 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVESIIRDLVEMAIKMLREQETAKLRHK 122 Query: 126 ASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A AE+RILD L+ ++TR+ FRKKLR+G++ DKEIDI+VAD+ + Sbjct: 123 AEDAAEDRILDVLLPPARGGDPELEDNSTRQTFRKKLREGQLDDKEIDIDVADSPMGVEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L LFS GS + KK +M V+ + ++ +E+ +L++ + + ++ Sbjct: 183 MTPPGMEEM-TSQLQNLFSS-FGSQKTKKRKMKVKDAFRQVRDEEAAKLVNEEELKARAV 240 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 + VE GIVFLDE DK+ +G VSREGVQRDLLPLVEG +VSTKYG I TDHILF Sbjct: 241 EAVEQNGIVFLDEIDKVAKSSERSGGEVSREGVQRDLLPLVEGCTVSTKYGMIKTDHILF 300 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+S+P+DL+PE+QGR P+RV L +L DF+ IL + +L QY L KTE I Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELDALTVDDFKRILVEPSMSLTKQYVALAKTEHI 360 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAE 417 L+FTE+ I +A++A +N +IGARRL TV+ER+LE++S+SASD+ ++TV I A Sbjct: 361 NLNFTEEGIHRIAEIAFQVNERTENIGARRLHTVLERLLEEVSYSASDMPNDQTVDITAA 420 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV +G+ D+ +IL Sbjct: 421 YVDEQLGEIAENEDLSQYIL 440 >gi|87309985|ref|ZP_01092118.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina DSM 3645] gi|87287231|gb|EAQ79132.1| ATP-dependent protease ATP-binding subunit [Blastopirellula marina DSM 3645] Length = 448 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/447 (47%), Positives = 311/447 (69%), Gaps = 22/447 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ LD+ I+GQ DAKRAVA+A+RNRWRR+QLP DL+ E+ PKNI+++GPTGVGK Sbjct: 8 LTPREIVAALDQNIVGQADAKRAVAVAVRNRWRRKQLPEDLQAEIAPKNIMMMGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TK+TE+GY GR+VE ++R+LV+ +I +VRE R V + A Sbjct: 68 TEIARRLAKLTGAPFLKVEATKYTEVGYYGRDVESMVRELVETSIAMVRERERKNVEKDA 127 Query: 127 SINAEERILDALVGKTAT--------------SNTREVFRKKLRDGEISDKEIDIEVADT 172 + EER+LD LV + + TRE FR LR GE+ +++++ + Sbjct: 128 VVRVEERLLDLLVPRPVSYEMASEEEEATDHYERTRERFRGMLRGGELEQRKVELTIEQK 187 Query: 173 SSDISNFDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 S+ + + GG + ++ L +F K++ ++ +++ + L+ ES+ L+D Sbjct: 188 SAPM----MIGGMGLEQMDVDLQGMFEKILPKNSTRR-ELTIAQARGVLLEQESESLLDK 242 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + +++ +I++ EN GI+FLDE DKIVA D +G VSR+GVQRDLLP+VEG++V TK+G Sbjct: 243 EAINQAAIELAENLGIIFLDELDKIVATDGKSG-DVSRQGVQRDLLPIVEGTTVQTKHGY 301 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 ++TDH+LFIA+GAFH S P++L+PE+QGRFP+RV L L K DF ILT+ ++L +QYK Sbjct: 302 VSTDHVLFIAAGAFHKSSPSELMPELQGRFPIRVELNDLTKDDFVRILTEPNASLTMQYK 361 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ EG+ +DFTED+I+ LA+ A +N T +IGARRL T+MER+LE++SF A D+ K Sbjct: 362 ALLAAEGLKIDFTEDAIEELAEFAFQVNQTTQNIGARRLYTIMERLLEELSFEAPDMTTK 421 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDAEYVR + + D+ FIL Sbjct: 422 KVTIDAEYVRERLTKVTQDEDLSRFIL 448 >gi|84390847|ref|ZP_00991539.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] gi|84376650|gb|EAP93527.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] Length = 446 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/445 (50%), Positives = 310/445 (69%), Gaps = 16/445 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMEKVQYRA 123 Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172 AEERILDAL+ T +SNTR++FRKKLR+G++ DKEI+++VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSTEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + PG + L +F + G +KK+ +M ++ + L +E+ +L++ + Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGDTKKKR-KMKIKDAFKALTEEEASKLVNQEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +I EN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + Sbjct: 242 LKESAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY L Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSAHDFKRILTEPKASLTEQYIAL 361 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 MKTE + ++FTED I+ +AD A +N T +IGARRL TVMER++++ISF A+D + Sbjct: 362 MKTEDVGIEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDRAGSKL 421 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +ID YV +G+ + D+ FIL Sbjct: 422 LIDEAYVISKLGELVEDEDLSRFIL 446 >gi|332308411|ref|YP_004436262.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175740|gb|AEE24994.1| heat shock protein HslVU, ATPase subunit HslU [Glaciecola agarilytica 4H-3-7+YE-5] Length = 443 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ K TR+ FRKKLR+G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLLPPAENQWGEKEKNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + GS +KKK ++ +++ + L+ +E+ RL++ + + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKAN 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ +E GIVF+DE DKI R+ N G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY L+KT Sbjct: 302 ILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAEDFIRILTEPNASLTEQYIALLKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT+D I+ +A A +N +IGARRL TVMER++E+ISF AS+ + + +D Sbjct: 362 EGVEVEFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKNGEQLTVD 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ D+ FIL Sbjct: 422 AKYVNDHLEMLVENEDLSRFIL 443 >gi|254229426|ref|ZP_04922841.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25] gi|262392523|ref|YP_003284377.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. Ex25] gi|151937997|gb|EDN56840.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio sp. Ex25] gi|262336117|gb|ACY49912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio sp. Ex25] Length = 443 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ +S+TR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ ++ ++ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKR-KLKIKDAMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N + +IGARRL TVMER++++IS+ A++ VID Sbjct: 362 EDVDIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV+ +GD + D+ FIL Sbjct: 422 AAYVKERLGDTIEDEDLSRFIL 443 >gi|255020689|ref|ZP_05292751.1| ATP-dependent hsl protease ATP-binding subunit HslU [Acidithiobacillus caldus ATCC 51756] gi|254969925|gb|EET27425.1| ATP-dependent hsl protease ATP-binding subunit HslU [Acidithiobacillus caldus ATCC 51756] Length = 443 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 223/439 (50%), Positives = 310/439 (70%), Gaps = 9/439 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD+YI+GQ +AKRAVA+ALRNRWRR Q+ DLR E+ PKNIL++GPTGVGK Sbjct: 6 MTPREIVQELDKYIVGQDEAKRAVAVALRNRWRRAQVSGDLRAEITPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL ++A+N+VR R+ V +A Sbjct: 66 TEIARRLAQLAKAPFIKVEATKFTEVGYVGKDVESIIRDLAEIAVNLVRNERQQAVGLRA 125 Query: 127 SINAEERILDALV-GKTATS------NTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 AEERILDAL+ G S NTR+ FRK LR+G++ DKEIDIE+ + F Sbjct: 126 EELAEERILDALLPGPRDASLPRQDENTRQKFRKMLREGKLDDKEIDIEIRASKGPGVEF 185 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 P G L +LF++ M ++ ++SV + L +E+ +L++ D V +++ Sbjct: 186 MAPPGMEEMGAQLRDLFAR-MAPHNTQRRKVSVAEARTLLRDEEAAKLVNEDEVRSTALE 244 Query: 240 MVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 ++ GIVF+DE DK+ +R++ +G +SREGVQRDLLPLVEGS+VST+YG + TDHILF Sbjct: 245 RLQADGIVFIDEIDKVTSRNNAQSGPDISREGVQRDLLPLVEGSNVSTRYGVVKTDHILF 304 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D IL + E+ L+ QY L+ + + Sbjct: 305 IASGAFHLSKPSDLIPELQGRLPIRVELQALSAADLERILREPENALVRQYTALLAADEV 364 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+D I +A++A +N V +IGARRL TVMER+LED++F A D + ID +Y Sbjct: 365 ELRFTDDGIRRIAEIAQQVNEGVENIGARRLHTVMERLLEDLAFRAPDAGIGEITIDTDY 424 Query: 419 VRLHIGDFPSETDMYHFIL 437 V +GD ++ D+ +IL Sbjct: 425 VNARLGDLAADEDLSRYIL 443 >gi|332995304|gb|AEF05359.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas sp. SN2] Length = 442 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 305/441 (69%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+ +V+ +A Sbjct: 64 TEIARRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKETEMKKVKFRA 123 Query: 127 SINAEERILDALV-------GK---TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ GK TR+ FRKKLR G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLIPPPEDAWGKKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + GS +KKK ++ ++ L+ +E+ RL++ + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKDALKMLVEEEAARLVNQEDLKEK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI R+ VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 242 AIESVEQHGIVFVDEIDKICKREGNTSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L QYK LM TE Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALEVGDFKRILTEPNASLTEQYKALMLTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ +DF E I +A+ A +N +IGARRL TV+ER++EDISF AS+ ++ VID Sbjct: 362 GVNIDFVESGIQRIAEAAWRVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDE 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ D+ FIL Sbjct: 422 DYVNSHLESLVENEDLSRFIL 442 >gi|91226628|ref|ZP_01261352.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] gi|91189102|gb|EAS75384.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] Length = 443 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 311/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ+ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQEKAKRSVAIALRNRWRRMQLEESLRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAVKMTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ +S+TR++FRKKLR+G++ DKEI+I+VA Sbjct: 124 EEQAEERILDALLPPARDSWGQAEQTEESSHTRQIFRKKLREGQLDDKEIEIDVAAPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +KK+ ++ ++ L +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLAGDTKKKR-KLKIKDAMKALAEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 AAIFNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILF+ASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFVASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N + +IGARRL TVMER++++IS+ A++ VID Sbjct: 362 EDVEIEFTEDGITQIAEAAWTVNESTENIGARRLHTVMERLMDEISYDAAEQSGAKFVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 + YV+ +GD + D+ FIL Sbjct: 422 SAYVKARLGDTIEDEDLSRFIL 443 >gi|109900490|ref|YP_663745.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas atlantica T6c] gi|123064029|sp|Q15N47|HSLU_PSEA6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|109702771|gb|ABG42691.1| heat shock protein HslVU, ATPase subunit HslU [Pseudoalteromonas atlantica T6c] Length = 443 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 310/442 (70%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQ++AKRAV++ALRNRWRR QL DLR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQKNAKRAVSVALRNRWRRMQLSGDLRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMAKEQETKKVKYRA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ + TR+ FRKKLR+G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLLPPAENQWGEKEQNEDKGTRQTFRKKLREGQLDDKEIEIDVALPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + GS +KKK ++ +++ + L+ +E+ RL++ + + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEAFKLLIEEEAARLVNQEDLKAN 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ +E GIVF+DE DKI R+ N G VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 242 AIESLEQNGIVFIDEIDKICKREGSNSGGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF +++P+DL+PE+QGR P+RV L++L DF ILT+ ++L QY L+KT Sbjct: 302 ILFIASGAFQMAKPSDLIPELQGRLPIRVELEALTAGDFIRILTEPNASLTEQYIALLKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ +DFT+D I+ +A A +N +IGARRL TVMER++E+ISF AS+ + + +D Sbjct: 362 EGVDVDFTQDGIERIAQAAWQVNERTENIGARRLHTVMERLMEEISFDASEKSGEQLTVD 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A+YV H+ D+ FIL Sbjct: 422 AKYVNDHLEMLVENEDLSRFIL 443 >gi|254796566|ref|YP_003081402.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia risticii str. Illinois] gi|254589803|gb|ACT69165.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia risticii str. Illinois] Length = 477 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/450 (49%), Positives = 319/450 (70%), Gaps = 17/450 (3%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 ++ +P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR +P L DE++PKNIL++GPTG Sbjct: 29 AYSAAPKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNVPKPLHDEIIPKNILMIGPTG 88 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+ V++ +R + Sbjct: 89 VGKTEIARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFS 148 Query: 124 EQASINAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVAD 171 ++A +A+E+ILDALVGK T + R VF KKL +G++ D EI+I V D Sbjct: 149 KEAEESAKEKILDALVGKKNTEDDDLVDGEDEKHDARAVFEKKLDEGKLDDAEIEINVRD 208 Query: 172 TSSDI-SNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRL 227 ++ D+PG G +G++N+ ++ SKV G+ +K K + K +++ D E + L Sbjct: 209 IPQNVFPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDL 268 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 D D + ++++ +V N G+VF+DE DKI AR G V+REGVQRDLLPL+EG++V TK Sbjct: 269 FDEDAIIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTK 327 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+ D ILT+TES+L+ Sbjct: 328 YGVVKTDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLK 387 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY L++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D Sbjct: 388 QYCALLETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDN 447 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 KT ID EYV H+ + D+ FIL Sbjct: 448 VGKTFSIDREYVDKHLQTIIKKLDLSKFIL 477 >gi|310822320|ref|YP_003954678.1| hslu-like protein [Stigmatella aurantiaca DW4/3-1] gi|309395392|gb|ADO72851.1| HslU-like protein [Stigmatella aurantiaca DW4/3-1] Length = 465 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/457 (47%), Positives = 318/457 (69%), Gaps = 27/457 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PRE+VSELDRYI+GQ AKRAVAIALRNRWRRQ++ DLR+E+ PKNI+++GPTGVGK Sbjct: 10 FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 69 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE ++V+ +A Sbjct: 70 TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 129 Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164 AE+R+++ L G + RE R +LR G + D+E Sbjct: 130 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 189 Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 +D+E +D++ + NF G VG+ NL +LF + G R ++ ++ V + L ++E Sbjct: 190 VDVETSDSAPTFLRNFTGHGMEEVGV-NLQDLFKNMPGMNRTRRRKVRVPEALRLLQQEE 248 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLLPLVE 280 + +L+D D V R+++ E+ GI+F+DE DKI +R+ G +G VSREGVQRD+LP+VE Sbjct: 249 AAKLVDTDRVTREALVRAESSGIIFIDEIDKIASREGGGKGSGPDVSREGVQRDILPIVE 308 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+ D IL + Sbjct: 309 GSTINTKYGQVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILRE 368 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++LI QY L+ TEG+ L+FT+D+++ +A +A N +IGARRL TV+ER+L+++ Sbjct: 369 PRNSLIRQYTALLATEGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEV 428 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF AS++ +K + +DA YVR + + D+ +IL Sbjct: 429 SFGASEMGQKALKVDAAYVRERLASIVQDEDLSRYIL 465 >gi|52840878|ref|YP_094677.1| ATP-dependent protease ATP-binding subunit HslU [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360705|ref|YP_001251912.1| ATP dependent Hsl protease ATP binding subunit [Legionella pneumophila str. Corby] gi|52627989|gb|AAU26730.1| ATP dependent Hsl protease, ATP binding subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282478|gb|ABQ56566.1| ATP dependent Hsl protease, ATP binding subunit [Legionella pneumophila str. Corby] Length = 447 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++ P LR+E+MPKNIL++GPTGV Sbjct: 9 MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 67 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI RE +V Sbjct: 68 GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 127 Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ + R+VFRK+LR+GE++D EI+IEVA T I Sbjct: 128 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 187 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V GS R K +M+V K L +E+ +LI+ + + Sbjct: 188 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 245 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DKI R D+ +G VSREGVQRDLLPLVEG++VSTKYG + +DH Sbjct: 246 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 305 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM+T Sbjct: 306 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 365 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D +TV +D Sbjct: 366 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 425 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 426 KAYVDKNLGQLIADEDLARYIL 447 >gi|54293625|ref|YP_126040.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila str. Lens] gi|54296664|ref|YP_123033.1| ATP-dependent protease ATP-binding subunit HslU [Legionella pneumophila str. Paris] gi|296106229|ref|YP_003617929.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella pneumophila 2300/99 Alcoy] gi|62286752|sp|Q5WYQ8|HSLU_LEGPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286755|sp|Q5X7B0|HSLU_LEGPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286761|sp|Q5ZXU0|HSLU_LEGPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|53750449|emb|CAH11843.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella pneumophila str. Paris] gi|53753457|emb|CAH14912.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella pneumophila str. Lens] gi|158512135|gb|ABW69096.1| heat shock protein ATPase subunit [Legionella pneumophila] gi|295648130|gb|ADG23977.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Legionella pneumophila 2300/99 Alcoy] Length = 441 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++ P LR+E+MPKNIL++GPTGV Sbjct: 3 MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI RE +V Sbjct: 62 GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 121 Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ + R+VFRK+LR+GE++D EI+IEVA T I Sbjct: 122 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 181 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V GS R K +M+V K L +E+ +LI+ + + Sbjct: 182 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 239 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DKI R D+ +G VSREGVQRDLLPLVEG++VSTKYG + +DH Sbjct: 240 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 299 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM+T Sbjct: 300 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 359 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D +TV +D Sbjct: 360 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 419 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 420 KAYVDKNLGQLIADEDLARYIL 441 >gi|292670831|ref|ZP_06604257.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541] gi|292647452|gb|EFF65424.1| heat shock protein HslVU [Selenomonas noxia ATCC 43541] Length = 464 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/459 (49%), Positives = 320/459 (69%), Gaps = 33/459 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV ELD+YI+GQ +AKR+VA+ALRNRWR +QL A+LRD+++PKNIL++G TGVGKT Sbjct: 10 TPREIVVELDKYIVGQHEAKRSVAVALRNRWRSRQLDAELRDDIIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR+ + +EV+E+A Sbjct: 70 EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRQQKIEEVQEKAE 129 Query: 128 INAEERILDALVG-KTATSNT------------------------REVFRKKLRDGEISD 162 NAEER++D V + +SN RE RK+LR GE+ D Sbjct: 130 ENAEERLIDVFVPVQKKSSNPLGSLFSSEQEEKIEAQEPPKYQAGREWVRKRLRSGELED 189 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 I+I+V +++ + + G+S+ + NL + K++ R +K +++V + Sbjct: 190 DLIEIDVEESARPMGG--MFAGSSLESMSDNLQSMIGKLVPK-RHRKRKVTVNQARKIFA 246 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPL 278 +E+D+L+DMD V ++++ E GIVFLDE DK VA SG+ G +SREGVQRD+LP+ Sbjct: 247 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDK-VAVSSGHSTGADISREGVQRDILPI 305 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF IL Sbjct: 306 VEGSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERIL 365 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T+ ++ LI QY L+ EG+ L F ED++ LA++A +N DIGARRL T++E++LE Sbjct: 366 TEPKNALIKQYSALLGVEGVSLHFEEDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLE 425 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++SF+A DL+EK +VID YV + D + D+ FIL Sbjct: 426 EVSFNAPDLKEKEIVIDTAYVDRCLADIAGDHDVSRFIL 464 >gi|307609439|emb|CBW98929.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella pneumophila 130b] Length = 439 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/442 (53%), Positives = 306/442 (69%), Gaps = 14/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++ P LR+E+MPKNIL++GPTGV Sbjct: 1 MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIKDPV-LRNEIMPKNILMIGPTGV 59 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA LA APFIKVE TKFTE+GYVGR+V+ IIRDL D+AI RE +V Sbjct: 60 GKTEIARRLANLAKAPFIKVEATKFTEVGYVGRDVDSIIRDLTDMAIKQEREFAMKKVEH 119 Query: 125 QASINAEERILDALVGKT--------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ + R+VFRK+LR+GE++D EI+IEVA T I Sbjct: 120 LAEDAAEERILDVLLPPARGTLTPGEKNTTARQVFRKQLREGELNDNEIEIEVAATPVGI 179 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V GS R K +M+V K L +E+ +LI+ + + Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GSYRTKTRKMTVAKAMKILREEEAAKLINEEDIKLK 237 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DKI R D+ +G VSREGVQRDLLPLVEG++VSTKYG + +DH Sbjct: 238 AIESVEQNGIVFIDELDKIAKRSDTVSGGDVSREGVQRDLLPLVEGTTVSTKYGMVKSDH 297 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM+T Sbjct: 298 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPSASLTLQYSALMET 357 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D +TV +D Sbjct: 358 EGLTLTFDETGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVD 417 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 418 KAYVDKNLGQLIADEDLARYIL 439 >gi|149173422|ref|ZP_01852052.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM 8797] gi|148847604|gb|EDL61937.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM 8797] Length = 454 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/454 (47%), Positives = 314/454 (69%), Gaps = 24/454 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV+ELD++I+GQ DAKRAVAIALRNRWR QQLP +LR+E+ PKNI+++GPTGVG Sbjct: 3 ELTPRQIVAELDKHIVGQDDAKRAVAIALRNRWRWQQLPDELRNEITPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE TK+TE+GY GR+VE ++RDLVD A N+VRE +R EV ++ Sbjct: 63 KTEITRRLAKLINAPFIKVEATKYTEVGYYGRDVESMVRDLVDSAKNLVREKKRVEVVDK 122 Query: 126 ASINAEERILDALV---------------GKTATSN-----TREVFRKKLRDGEISDKEI 165 A + EER+LD L+ GK ++ TR+ FRK L G + +KE+ Sbjct: 123 AKVRVEERLLDLLIPRPEWEASYSESTEEGKEENASERYERTRDKFRKMLSQGALEEKEV 182 Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +I + SS + F G + + +L +F ++M K + +MSV++ L+ E + Sbjct: 183 EISIDAKSSPVQVFSNMGMDQMDV-DLQGMFERIMPQQSKHR-KMSVKEARGVLLEQEVE 240 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 L+D D + +++Q+ E GIVF+DE DKI + G G VSR+GVQRDLLP+VEG++ Sbjct: 241 GLMDKDAIAEEAVQLAERSGIVFIDELDKICTSEEGGNRGGDVSRQGVQRDLLPIVEGTT 300 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 V T+ GS+ TD++LFIA+GAFH ++P+DL+PE+QGRFP+RV L+ L + DF ILT+ S Sbjct: 301 VQTRSGSVKTDYMLFIAAGAFHRTKPSDLMPELQGRFPIRVELQELTRDDFLRILTEPTS 360 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 ++ +QY+ L++TEG+ + F +D ++ LA +A ++N T +IGARRL T++ER+LE++SF Sbjct: 361 SITMQYQALLETEGVKIKFEQDGLEELAKIAFDVNQTTQNIGARRLHTILERLLEEVSFE 420 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A DL+ K +VID YV+ + + D+ FIL Sbjct: 421 APDLKTKKIVIDVPYVQQKLHSIVEDEDLSKFIL 454 >gi|317484401|ref|ZP_07943317.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6] gi|316924353|gb|EFV45523.1| heat shock protein HslVU [Bilophila wadsworthia 3_1_6] Length = 433 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/432 (49%), Positives = 306/432 (70%), Gaps = 3/432 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ELD+YIIGQ AKR VAIA+RNRWRRQ+L A+LR+E+ P+NI+++GPTGVGK Sbjct: 4 LTPREIVAELDKYIIGQNQAKRMVAIAVRNRWRRQRLAAELRNEVAPRNIIMMGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APFIKVE TK+TE+GYVGR+VE +IRDL+++ IN+VR ++V+ +A Sbjct: 64 TEIARRLAKLCSAPFIKVEATKYTEVGYVGRDVESMIRDLMEIGINLVRAEEAEKVKGRA 123 Query: 127 SINAEERILDALV-GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 AEER+LD L+ NTRE R+ R G + D+E++ EV + S I +PG Sbjct: 124 EAAAEERLLDLLLPSGDGRENTREKLRELFRQGFLDDREVEFEVKEQSQPIGMLGVPGME 183 Query: 186 SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 +G + FSK+ +K +M V + L+ DES +L+D D + + + VE G Sbjct: 184 QLGD-QMKGAFSKLFPQKTHRK-KMKVGAAWRHLIEDESSKLVDEDKITDLARERVEQMG 241 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 IVF+DE DK+ + +SREGVQRDLLP+VEGS+V+TKYG +NTDHILFIA+GAFH Sbjct: 242 IVFIDEIDKLASGSQQRSADISREGVQRDLLPIVEGSAVNTKYGLVNTDHILFIAAGAFH 301 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +S+P+DL PE+QGRFP+R L++L K +F ILT+ ++L QY+ +++TEG+ ++FT+D Sbjct: 302 LSKPSDLFPELQGRFPLRAELEALGKEEFYRILTEPHNSLTRQYEAMLETEGVRIEFTDD 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 + +A A ++N+ +IGARRL T+ME++L DISF AS+ + T+VID E+V + D Sbjct: 362 GLREIAAFAEDVNTRTENIGARRLHTIMEKILADISFDASEKRGSTLVIDREHVVAQLAD 421 Query: 426 FPSETDMYHFIL 437 ++ ++ FIL Sbjct: 422 VRADAELSRFIL 433 >gi|254498810|ref|ZP_05111521.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii LLAP12] gi|254351974|gb|EET10798.1| ATP-dependent protease ATP-binding subunit [Legionella drancourtii LLAP12] Length = 438 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/441 (52%), Positives = 304/441 (68%), Gaps = 13/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD++IIGQ DAKRAVAIALRNRWRR ++ P LR+E+MPKNIL++GPTGV Sbjct: 1 MTPREIVQELDKHIIGQDDAKRAVAIALRNRWRRMKIQDPV-LRNEIMPKNILMIGPTGV 59 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+AI RE +V Sbjct: 60 GKTEIARRLAKLAHAPFIKVEATKFTEVGYVGRDVDSILRDLADIAIKQEREWAMKKVEH 119 Query: 125 QASINAEERILDALV----GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ G +S+ R+VFRK+LR+G + + EI+IEV+ T I Sbjct: 120 LAEDAAEERILDVLLPPARGSLTSSDKDSTARQVFRKQLREGLLDENEIEIEVSATPVGI 179 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V G+ R K +M++ K L +E+ +LI+ D + Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GTHRTKTRKMTIAKAMKILREEEASKLINEDDIKVR 237 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE GIVF+DE DK+ R G G VSREGVQRDLLPLVEG++VSTKYG I +DHI Sbjct: 238 AIESVEQNGIVFIDELDKVAKRSEGGGGDVSREGVQRDLLPLVEGTTVSTKYGMIKSDHI 297 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM TE Sbjct: 298 LFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMATE 357 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D + V +D Sbjct: 358 GLTLSFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGEAVHVDK 417 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 418 AYVEKNLGQLVADEDLARYIL 438 >gi|15825803|pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/441 (52%), Positives = 300/441 (68%), Gaps = 12/441 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL +GPTGVGKT Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A +VR+ + R +A Sbjct: 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAE 124 Query: 128 INAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ + S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 125 DVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXG 184 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L LF +GS + KK + ++ L+ DE+ +LI+ + + + Sbjct: 185 VEIXAPPGXEEXTNQLQSLFQN-LGSDKTKKRKXKIKDALKALIDDEAAKLINPEELKQK 243 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 244 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHI 303 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ ++L QYK L TE Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATE 363 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ + FT D++ +A+ A +N +IGARRL TV ER+ + ISFSASD +TV IDA Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNIDA 423 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV +G+ D+ FIL Sbjct: 424 AYVADALGEVVENEDLSRFIL 444 >gi|332286549|ref|YP_004418460.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp. T7-7] gi|330430502|gb|AEC21836.1| ATP-dependent protease ATP-binding subunit HslU [Pusillimonas sp. T7-7] Length = 443 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/441 (50%), Positives = 305/441 (69%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P EIVSELD+ I+GQ AKR+VA+ALRNRWRRQQ+P LR+E++PKNIL++GPTGVG Sbjct: 5 NMTPGEIVSELDKNIVGQDRAKRSVAVALRNRWRRQQVPEPLRNEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLV++++ R+ + VR Q Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLVEISVKQSRDVQMRRVRTQ 124 Query: 126 ASINAEERILDALVGKT---------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AE+RILD L+ +N R+ FRK+LR+G++ D EI+IEVA + + Sbjct: 125 AEDAAEDRILDVLISPARDAQGEPVREENNARQTFRKRLREGKLDDMEIEIEVAQLAPQM 184 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F+ +G +KK +M+V++ + L +E+ R ++ D + Sbjct: 185 EIMAPPGMEEM-TEQLKGMFAG-LGRDKKKPKKMTVKEAFKLLTEEEAGRRVNEDELRTS 242 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++ E GIVFLDE DKI R +G VSR+GVQRDLLPLVEG++V+TKYG + TDHI Sbjct: 243 AVSNAEQNGIVFLDEIDKIATRQEHSGGDVSRQGVQRDLLPLVEGTTVNTKYGVVKTDHI 302 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +SRP+DL+PE+QGRFP+RV L SL DF IL DT+S+L QY LM TE Sbjct: 303 LFIASGAFQMSRPSDLIPELQGRFPIRVELDSLTAQDFVRILCDTDSSLTKQYHALMATE 362 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 + L FT++ I+ LA++A +N +IGARRL TVME++LED+SF A+ TV +DA Sbjct: 363 DVALHFTDEGIERLAELAFEVNERTENIGARRLYTVMEKLLEDLSFDATSSSGTTVTVDA 422 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + + S D+ ++L Sbjct: 423 AYVNDKLEETASSQDLARYVL 443 >gi|332532291|ref|ZP_08408171.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pseudoalteromonas haloplanktis ANT/505] gi|332038158|gb|EGI74604.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pseudoalteromonas haloplanktis ANT/505] Length = 442 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 222/442 (50%), Positives = 314/442 (71%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELD++IIGQ AK+AVAIALRNRWRR QL DLR E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLKEDLRSEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE + + + + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122 Query: 126 ASINAEERILDALV-------GKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILDAL+ G+T S+TR+ FRKKLR+G++ DKEI+I++A + Sbjct: 123 AEEAAEERILDALLPPAKDQYGETQRDDNSSTRQAFRKKLREGQLDDKEIEIDLAQAQPN 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F MG ++ K ++ +++ + L +E+ +L++ + + Sbjct: 183 VEIMAPPGMEDM-TNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAAKLVNPEELKE 240 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+V+TK+G + TDH Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFIASGAF +++P+D++PE+QGR P+RV L++L DF+ ILT+ ++L Q +EL+KT Sbjct: 301 MLFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++F++D+I+ +A A +N +IGARRL TVMER++E+IS+ AS+ ++VID Sbjct: 361 EQVSIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+G + D+ FIL Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442 >gi|320539526|ref|ZP_08039193.1| molecular chaperone and ATPase component of HslUV protease [Serratia symbiotica str. Tucson] gi|320030379|gb|EFW12391.1| molecular chaperone and ATPase component of HslUV protease [Serratia symbiotica str. Tucson] Length = 444 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/443 (49%), Positives = 304/443 (68%), Gaps = 14/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSHIIGQHKAKRAVAIALRNRWRRMQLNEMLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D AI +VR ++ A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRIQSIEKNHAHA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ S R+ FRKKLR+G++ DKEI++++A T + Sbjct: 124 EELAEKRILDVLIPPAKNNWGQLEEHKEPSAARQAFRKKLREGQLDDKEIELDLAATPIN 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +GS ++K ++ +++ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQN-LGSQKQKPRKLKIKEAFKLLVEEEAGKLVNPEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +I+ VE +GIVF+DE DKI R + + VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 242 QAIEAVEQHGIVFIDEIDKICKRGNQSSSPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF + P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK L+ Sbjct: 302 HILFITSGAFQTANPSDLIPELQGRLPIRVELQALTTEDFERILTEPSASLSEQYKALLG 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+ ++FT D I +A+ A +N +IGARRL TV+ER++EDIS+ AS++ +T+ I Sbjct: 362 TEGVNIEFTTDGIRHIAEAAWQVNENTENIGARRLHTVLERLMEDISYDASEINGQTITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YVR H+ + ++ D+ FIL Sbjct: 422 DADYVRSHLDELVADEDLSRFIL 444 >gi|88607962|ref|YP_506072.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu str. Miyayama] gi|88600131|gb|ABD45599.1| heat shock protein HslVU, ATPase subunit HslU [Neorickettsia sennetsu str. Miyayama] Length = 472 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/450 (49%), Positives = 319/450 (70%), Gaps = 17/450 (3%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 ++ +P+ +VS LDR+++GQ+ AK+ +AIA+RNRWRR +P L DE++PKNIL++GPTG Sbjct: 24 AYSAAPKALVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNIPKPLHDEIIPKNILMIGPTG 83 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RR+A+L+GAPFIKVE TKFTE+GYVGR+VE IIRDLVD A+ V++ +R + Sbjct: 84 VGKTEIARRVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFS 143 Query: 124 EQASINAEERILDALVGKTATSN------------TREVFRKKLRDGEISDKEIDIEVAD 171 ++A +A+E+ILDALVGK T + R VF KKL +G++ D EI+I V + Sbjct: 144 KEAEESAKEKILDALVGKKNTEDDDLADGEDEKHDARAVFEKKLDEGKLDDAEIEINVRE 203 Query: 172 TSSDI-SNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRL 227 ++ D+PG G +G++N+ ++ SKV G+ +K K + K +++ D E + L Sbjct: 204 LPQNVFPTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDL 263 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 D D + ++++ +V N G+VF+DE DKI AR G V+REGVQRDLLPL+EG++V TK Sbjct: 264 FDEDAIIKEALDLVTNRGMVFIDEIDKICARTEVRG-EVNREGVQRDLLPLLEGTTVVTK 322 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILF+ SGAFH ++P+DLLPE+QGR P+RV L SL+ D ILT+TES+L+ Sbjct: 323 YGVVKTDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLK 382 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY L++TEG+ L+FT+D + A+A+ A+ +N+ V +IGARRL T+ME +LE+I+F A+D Sbjct: 383 QYCALLETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDN 442 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 KT ID EYV H+ + D+ FIL Sbjct: 443 VGKTFSIDREYVDKHLQTIIKKLDLSKFIL 472 >gi|315125398|ref|YP_004067401.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp. SM9913] gi|315013911|gb|ADT67249.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp. SM9913] Length = 442 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 311/442 (70%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELD++IIGQ AK+AVAIALRNRWRR QL DLR E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLNEDLRAEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDLVDV+I + RE + + + + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLVDVSIKMTREQQTKKFKHR 122 Query: 126 ASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AEERILD L V + S+TR+ FRKKLR+G++ DKEIDI++A + Sbjct: 123 AEEAAEERILDVLLPPAKDQYGEVQRDENSSTRQSFRKKLREGQLDDKEIDIDLAQAQPN 182 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 I PG + L +F MG ++ K ++ +++ + L +E+ +L++ + + Sbjct: 183 IEIMAPPGMEEM-TNQLQGMFQN-MGGDKRTKRKLKIKEAFKLLTEEEAGKLVNPEELKE 240 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+V+TK+G + TDH Sbjct: 241 QAIFAVEQNGIVFIDEIDKICKRGEASGPDVSREGVQRDLLPLIEGSTVNTKHGMVKTDH 300 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFIASGAF +S+P+D++PE+QGR P+RV L++L DF+ ILT+ ++L Q +EL+KT Sbjct: 301 MLFIASGAFQMSKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKT 360 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++F++D+I+ +A A +N +IGARRL TVMER++E+IS+ AS+ ++VID Sbjct: 361 EQVAIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMERLMEEISYDASEKAGSSLVID 420 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV H+G + D+ FIL Sbjct: 421 AAYVEKHLGALVEDEDLSRFIL 442 >gi|329900879|ref|ZP_08272628.1| ATP-dependent hsl protease ATP-binding subunit HslU [Oxalobacteraceae bacterium IMCC9480] gi|327549352|gb|EGF33923.1| ATP-dependent hsl protease ATP-binding subunit HslU [Oxalobacteraceae bacterium IMCC9480] Length = 453 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 226/448 (50%), Positives = 313/448 (69%), Gaps = 17/448 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV+ELD++++GQ +AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 8 MNMTPQEIVTELDKHVVGQANAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 67 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIK+E TKFTE+GYVGR+V+ IIRDL+D+ I RES +VR+ Sbjct: 68 GKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRESEMRKVRD 127 Query: 125 QASINAEERILDALV---------------GKTATSNTREVFRKKLRDGEISDKEIDIEV 169 +A AE+RI+D LV A S TR+ FRK+LR+G + D +I+IEV Sbjct: 128 RAGDAAEDRIIDILVPPARDFGIQPVATDGTPAAGSTTRQTFRKRLREGSLDDHQIEIEV 187 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 D+ + PG + + +FS V + RKK ++ V++ L+ +E+ +L++ Sbjct: 188 NDSGPQMDIMAPPGMEEM-TEQIKTMFSGV-SNNRKKMRKVKVKEALKLLVEEEAGKLLN 245 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 D + + +I VE GIVFLDE DKI +R G VSR GVQRDLLPLVEG++V+TKYG Sbjct: 246 EDELKQKAITNVEQNGIVFLDEIDKIASRSETGGAEVSRAGVQRDLLPLVEGTTVNTKYG 305 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ +DF ILT T++ L QY Sbjct: 306 MIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTRQY 365 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + + F++D I LA++A ++N +IGARRL TVME++LED+SF+A++ Sbjct: 366 QALLSTENMTITFSDDGIRRLAEIAYSVNEKTENIGARRLYTVMEKLLEDMSFNATERSG 425 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV I A YV +G D+ H++L Sbjct: 426 ETVNITAPYVDERLGALAVNEDLSHYVL 453 >gi|293602500|ref|ZP_06684946.1| ATP-dependent protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] gi|292819262|gb|EFF78297.1| ATP-dependent protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] Length = 444 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/442 (50%), Positives = 309/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P EIVSELD+YI+GQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRQEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Q Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + ++ R+ FRK+LR+G+I D EI+IEVA + Sbjct: 125 AEDAAEDRILDALVPPARGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ M +KK +M V++ + ++ +E+ + ++ + + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKSKKMKVREAFKLIVDEEAAKRVNEEDLRT 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH++RP+DL+PE+QGRFP+RV L+SL DF IL+DT+++L QY LM T Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FT++ + LA++A ++N T +IGARRL TVME++L+++SF A+ Q+K V ID Sbjct: 363 EDVQLEFTDEGVRRLAELAYDVNETTENIGARRLYTVMEKLLDELSFDATSSQDKHVKID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + S D+ ++L Sbjct: 423 AAYVNSQLAEAASSQDLARYVL 444 >gi|239618025|ref|YP_002941347.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia TBF 19.5.1] gi|239506856|gb|ACR80343.1| heat shock protein HslVU, ATPase subunit HslU [Kosmotoga olearia TBF 19.5.1] Length = 464 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/460 (48%), Positives = 319/460 (69%), Gaps = 33/460 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P++IV ELD+YI+GQ +AKRAVA+ALRNR RRQ+LP D+R E++PKNIL++GPTGVG Sbjct: 10 QLTPKKIVEELDKYIVGQAEAKRAVAVALRNRIRRQKLPEDVRKEIIPKNILMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA L+ +PFIKVE T+FTE+GYVG+NV+ +IR+LV +N+V++ + EV E+ Sbjct: 70 KTEIARRLAELSKSPFIKVEATRFTEVGYVGKNVDSMIRELVAFGVNMVKQEKMKEVEEK 129 Query: 126 ASINAEERILDALV-------GKTAT---------------------SNTREVFRKKLRD 157 A E+RIL+ALV G+ RE +R+KLRD Sbjct: 130 AKQFVEDRILEALVPGLKHRAGQPKNIFELFQGVPQQRISPEEAENLRRKREEYRQKLRD 189 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 GE+ + +I+IE+ + + IPG +GI ++S +F ++ RKKK RMSV + Sbjct: 190 GELENLQIEIELEEQPKQM--IMIPGMEEMGI-DMSGMFGDML-PKRKKKKRMSVAEARK 245 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L+ ES++L+DMD V ++I+ VEN GIVF+DE DK+ AR S +G VSREGVQRDLLP Sbjct: 246 VLLPIESEKLLDMDKVIAEAIERVENRGIVFIDEIDKVTARGS-HGPDVSREGVQRDLLP 304 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 ++EG++++TKYG + TD ILFIA+GAFH+++P+DL+PE QGRFP+RV L L + DF I Sbjct: 305 IIEGTTINTKYGPVRTDFILFIAAGAFHLAKPSDLIPEFQGRFPIRVELNPLTEQDFLRI 364 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ ++ + QYK L++TEGI L+FTE + +A VA +LN + +IGARRL TV+E+VL Sbjct: 365 LTEPKNAITKQYKALLETEGITLEFTEAGLKEIARVAHDLNERIENIGARRLYTVVEKVL 424 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+ISF A D+ E V+I +YV I + ++ D+ FIL Sbjct: 425 EEISFEAPDVSEPKVIITEDYVNTRIKEILADEDLSAFIL 464 >gi|283853296|ref|ZP_06370546.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp. FW1012B] gi|283571336|gb|EFC19346.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio sp. FW1012B] Length = 459 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/458 (48%), Positives = 311/458 (67%), Gaps = 28/458 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIVS+LD+Y+IGQ DAKR VAIA+RNRWRRQQ+ LRDE+ PKNI+++GPTGVG Sbjct: 4 SMTPREIVSQLDKYVIGQNDAKRMVAIAMRNRWRRQQIEPGLRDEIAPKNIIMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE ++RDL+++ +N+VR+ D V + Sbjct: 64 KTEIARRLAKLAGSPFFKVEATKFTEVGYVGRDVESMVRDLMEIGVNLVRKEELDRVAAK 123 Query: 126 ASINAEERILDALVGKT-------------------------ATSNTREVFRKKLRDGEI 160 A AEER+LD L+ ++ A +TRE RK R+G + Sbjct: 124 AEKAAEERLLDLLLPESQRAGANPIPMPAALEAPAPAAEPSDANLSTREKLRKLWREGRL 183 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 D+ + +EV+ + + +PG +G ++FSK M RKK M V+ Y L+ Sbjct: 184 DDRLVPVEVSVPAPQVEMMSMPGMEEMGS-QFKDMFSK-MFPQRKKTRNMRVRDAYEVLL 241 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLV 279 ++ESDRL+DMD V + + VE GI+F+DE DKI SG +G VSREGVQRDLLP+V Sbjct: 242 QEESDRLVDMDKVSETAKERVEQTGIIFIDEIDKICGNKSGGSGPDVSREGVQRDLLPVV 301 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG V+TK+G + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L++L DF ILT Sbjct: 302 EGCVVNTKHGMVKTDHILFIAAGAFHFSKPSDLVPELQGRFPLRVELRALTAEDFYRILT 361 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ L +QY+ L+ TEG+ L FT++++ +AD A +N +IGARRL T+ME++L D Sbjct: 362 EPQNALTVQYRALLGTEGVDLTFTDEALREVADFARKVNEETENIGARRLYTIMEKILSD 421 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF ASD + VV+D YVR + D + D+ +IL Sbjct: 422 LSFEASDQSGQAVVVDPAYVRDKLKDVAEDRDLSRYIL 459 >gi|330818651|ref|YP_004362356.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] gi|327371044|gb|AEA62400.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] Length = 447 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/446 (48%), Positives = 316/446 (70%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALVGK---------TATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 AE+RILD L+ + + T+N TR+ FRK+LR+G + DKE+++++ Sbjct: 124 QDQAEDRILDILLPQPRAVGFGSNSETANDDNNATRQTFRKRLREGALDDKEVELDIEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS + G G+K + ++ +++ L +E+ +L++ + Sbjct: 184 QAGMDIMAPPGMEEM-TEQIRSMFSNI-GGGKKTRRKVKIKEALKLLSDEEAAKLLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G G VSR+GVQRDLLPLVEG++V+TKYG I Sbjct: 242 VKTRAVQNVEQNGIVFLDEIDKIASRNNEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LED+SF+A + + Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGEA 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA YV +G+ + D+ ++L Sbjct: 422 VTIDAAYVDRALGEVSKDEDLSRYVL 447 >gi|197334659|ref|YP_002157073.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri MJ11] gi|238690269|sp|B5FBL8|HSLU_VIBFM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|197316149|gb|ACH65596.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio fischeri MJ11] Length = 444 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFRA 123 Query: 127 SINAEERILDALV--GKTATSN---------TREVFRKKLRDGEISDKEIDIEVADTSSD 175 +AE+RILD L+ + A N TR+ FRKKLR+G++ DKEI+++VA Sbjct: 124 EEHAEDRILDILLPPARDAWGNNEEGDNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G KK +M + L +E +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELKE 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN+GIVF+DE DKI + + VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFI SGAF +++P+DL+PE+QGR P+RV L++L +DF+ ILT+ ++L QY L+ T Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++E+IS+ AS+ +++++D Sbjct: 363 ENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIVD 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV +G+ ++ D+ FIL Sbjct: 423 AEYVSSRLGELVADEDLSRFIL 444 >gi|311109413|ref|YP_003982266.1| heat shock protein HslVU, ATPase HslU [Achromobacter xylosoxidans A8] gi|310764102|gb|ADP19551.1| heat shock protein HslVU, ATPase subunit HslU [Achromobacter xylosoxidans A8] Length = 444 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 307/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P EIVSELD+YI+GQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 NMTPGEIVSELDKYIVGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Q Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + ++ R+ FRK+LR+G+I D EI+IEVA + Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEVAQAAPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ M +KK +M V++ + ++ +E+ + ++ + + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-MARDKKKPKKMKVREAFKLIVDEEAAKRVNEEDLRT 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 VAINNVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL DF IL+DT+++L QY LM T Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAEDFVRILSDTDASLTKQYTALMAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FTE+ + LA++A +N T +IGARRL TVME++L+++SF A+ +K V ID Sbjct: 363 EDLQLEFTEEGVRRLAELAFEVNETTENIGARRLYTVMEKLLDELSFDATASSDKNVKID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + S D+ ++L Sbjct: 423 AAYVNAQLAEAASSQDLARYVL 444 >gi|258404689|ref|YP_003197431.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium retbaense DSM 5692] gi|257796916|gb|ACV67853.1| heat shock protein HslVU, ATPase subunit HslU [Desulfohalobium retbaense DSM 5692] Length = 474 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/452 (47%), Positives = 304/452 (67%), Gaps = 23/452 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ELD+++IGQ +AKR VAIALRNRWRRQQL +L +E+ PKNI+++GPTGVGK Sbjct: 25 LTPREIVAELDKFVIGQDEAKRMVAIALRNRWRRQQLDPELAEEIAPKNIIMIGPTGVGK 84 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF KVE +KFTE+GYVGR+VE +IRDL+++ I +VR+ D VR +A Sbjct: 85 TEIARRLAKLARAPFFKVEASKFTEVGYVGRDVESMIRDLMEIGITLVRQEEMDRVRGKA 144 Query: 127 SINAEERILDALV---------------------GKTATSNTREVFRKKLRDGEISDKEI 165 AEE++LD L+ G+ A +TRE FR R G + D+ + Sbjct: 145 EEQAEEKLLDLLLPRGGKEDTAPSGQTFSDAAASGEGAKQSTREKFRTLFRQGRLDDRLV 204 Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +++V + +PG + ++FSK+M K + +M V+ Y L+++ESD Sbjct: 205 EVQVQAQGPQLQMASMPGMEEMET-QFKDMFSKIMPKKSKTR-KMQVRDAYEHLVQEESD 262 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +LIDMD V + + VE GI+FLDE DK+ ++ G VSREGVQRDLLP+VEG V+ Sbjct: 263 KLIDMDKVSEKARERVEQNGIIFLDEIDKVCSQREGGQTDVSREGVQRDLLPVVEGCVVN 322 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 TK+G + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV L +L K++F ILT+ ++ L Sbjct: 323 TKHGMVRTDHILFIAAGAFHYAKPSDLIPELQGRFPLRVELAALEKAEFYRILTEPQNAL 382 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 +QY+ L+ TE + L FT+D++ +A A +N +IGARRL T+ME++L +SF A Sbjct: 383 TVQYEALLGTEQVALSFTDDALQEVAAFAQRVNEETENIGARRLYTIMEKILNTLSFEAP 442 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D VV+DAEYVR H+ + D+ +IL Sbjct: 443 DKAGIEVVVDAEYVRQHLEGLEEDRDLTRYIL 474 >gi|170703231|ref|ZP_02894034.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria IOP40-10] gi|170131864|gb|EDT00389.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria IOP40-10] Length = 447 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/446 (48%), Positives = 319/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++++TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVEDFEAILDATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFARDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA YV +G+ + D+ ++L Sbjct: 422 VTIDANYVDRALGEVAQDEDLSRYVL 447 >gi|59712885|ref|YP_205661.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114] gi|75353333|sp|Q5E2H3|HSLU_VIBF1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|59480986|gb|AAW86773.1| molecular chaperone and ATPase component of HslUV protease [Vibrio fischeri ES114] Length = 444 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/442 (49%), Positives = 303/442 (68%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELRTEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAIKMTHQQAVEKVKFRA 123 Query: 127 SINAEERILDALV-------GKTATSN----TREVFRKKLRDGEISDKEIDIEVADTSSD 175 +AE+RILD L+ G N TR+ FRKKLR+G++ DKEI+++VA Sbjct: 124 EEHAEDRILDILLPPARDAWGNNEEGNNDSGTRQSFRKKLREGKLDDKEIEVDVAAPQVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G KK +M + L +E +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGNTTKKRKMKIVDALKALTEEEGAKLVNPEELKE 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN+GIVF+DE DKI + + VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSHSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFI SGAF +++P+DL+PE+QGR P+RV L++L DF+ ILT+ ++L QY L+ T Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTADDFKRILTEPNASLTEQYIALLAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++E+IS+ AS+ +++++D Sbjct: 363 ENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYDASEKNGESLIVD 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 AEYV +G+ ++ D+ FIL Sbjct: 423 AEYVSSRLGELVADEDLSRFIL 444 >gi|119896715|ref|YP_931928.1| ATP-dependent protease ATP-binding subunit HslU [Azoarcus sp. BH72] gi|166221459|sp|A1K2I6|HSLU_AZOSB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|119669128|emb|CAL93041.1| ATP-dependent Hsl protease ATP-binding subunit [Azoarcus sp. BH72] Length = 443 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 224/443 (50%), Positives = 304/443 (68%), Gaps = 13/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++I+GQ AK+AVAIALRNRWRR ++ LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPPEIVSELDKHIVGQARAKKAVAIALRNRWRRARIDEPLRSEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDLV++AI RE VR++ Sbjct: 63 KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLVEIAIKDGRERAMRVVRDR 122 Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A AE+R+LD L+ + S TR+ FRKKLR+GE+ DKE++IEVA Sbjct: 123 ALDAAEDRVLDVLLPPARPVGFSEPAQPQDSATRQKFRKKLREGELDDKEVEIEVASAPM 182 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 F PG + + +F +G+ RKK ++ +++ L +E+ RLI+ + V Sbjct: 183 QAEIFAPPGMEEL-TQQIQGMFQN-LGNSRKKLRKLPIREALKLLADEEAARLINDEEVK 240 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 ++++ VE GIVFLDE DKI AR +G VSR+GVQRDLLPLVEG+++STKYG I TD Sbjct: 241 TEALRAVEQNGIVFLDEVDKIAARADAHGADVSRQGVQRDLLPLVEGTTISTKYGMIKTD 300 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAFH+S+P+DL+PE+QGRFP+RV L+SL+ DF ILT T++ L QY+ L+ Sbjct: 301 HILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVEDFERILTSTDACLTRQYEALLA 360 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 T+G+ L FT + I LA++A +N +IGARRL TVME++LE++SF A + + + Sbjct: 361 TDGVTLSFTPEGIRRLAEIAYQVNEKTENIGARRLYTVMEKLLEEVSFEAGKVGVDKLTV 420 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA YV + D+ ++L Sbjct: 421 DAAYVDARLEVLAQREDLARYVL 443 >gi|254448955|ref|ZP_05062410.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium HTCC5015] gi|198261492|gb|EDY85782.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium HTCC5015] Length = 453 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 227/454 (50%), Positives = 306/454 (67%), Gaps = 27/454 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++IIGQ AKRAV+IALRNRWRR QLP R E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVQELDKHIIGQHAAKRAVSIALRNRWRRMQLPEATRHEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE TKFTE+GYVGR V+ II+DL D+A+ VRE +++V +A Sbjct: 64 TEIARRLAKLANAPFMKVEATKFTEVGYVGREVDSIIKDLADIAVKQVRELEKEKVWPRA 123 Query: 127 SINAEERILDALVGKT-ATSN--------------------TREVFRKKLRDGEISDKEI 165 AE+R+LD L+ +TSN TR+ FRKKLR+G+++DKEI Sbjct: 124 QDAAEDRVLDILLPPARSTSNGFGFDLSGEESPSEPAQDNETRQKFRKKLREGDLNDKEI 183 Query: 166 DIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 ++EVA S + PG S + ++ FS RK M ++ L +E Sbjct: 184 EVEVAAQSGGMQIMTPPGMEEMSSQLEDMFSKFSSKQSKKRK----MRIEDALKVLTDEE 239 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283 + ++I+ D + +I+ E GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+ Sbjct: 240 AGKMINEDDLKVRAIEQAEQNGIVFIDEIDKICQRSDRSGGDVSREGVQRDLLPLIEGST 299 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 V+TKYG I TDHILFI SGAFH+S+P+DL+PE+QGR P+RV ++ L DF+ IL + + Sbjct: 300 VNTKYGMIKTDHILFIGSGAFHLSKPSDLIPELQGRLPIRVEMEKLTADDFQRILKEPDH 359 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +L QY L+ TEG+ L+FTE+ ID +A+VA +N +IGARRL TVMER+LE++S+ Sbjct: 360 SLTKQYMALIGTEGLTLEFTEEGIDRIAEVAWQVNERTENIGARRLHTVMERLLEEVSYE 419 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ASD +KT+ +DA YV HIG + D+ +IL Sbjct: 420 ASDSSDKTLSVDAAYVDSHIGALVEDEDLSRYIL 453 >gi|77361646|ref|YP_341221.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas haloplanktis TAC125] gi|123588929|sp|Q3IJD5|HSLU_PSEHT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|76876557|emb|CAI87779.1| ATPase component of the HslUV protease, also functions as molecular chaperone [Pseudoalteromonas haloplanktis TAC125] Length = 442 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/441 (49%), Positives = 311/441 (70%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++IIGQ AK+AVAIALRNRWRR QL DLR+E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDQHIIGQAKAKKAVAIALRNRWRRMQLSDDLRNEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTEIGYVG+ VE IIRDLVDVAI + RE + + + +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEIGYVGKEVETIIRDLVDVAIKMTREQQTKKFKHRA 123 Query: 127 SINAEERILDALVGKTA----------TSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ +S+TR+ FRKKLR+G++ DKEI+I++A ++ Sbjct: 124 EEAAEERILDALLPPAKDQYGESQRDDSSSTRQTFRKKLREGQLDDKEIEIDLAQAQPNV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F MG ++ K ++ +++ + L +E+ +L++ + + Sbjct: 184 EIMAPPGMEDM-TNQLQSMFQN-MGGDKRTKRKLKIKEAFKLLSEEEAAKLVNPEELKEQ 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I VE GIVF+DE DKI R +G VSREGVQRDLLPL+EG +VSTK+G + TDH+ Sbjct: 242 AIFAVEQNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGCTVSTKHGMVKTDHM 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +++P+D++PE+QGR P+RV L++L DF+ ILT+ ++L Q +EL+KTE Sbjct: 302 LFIASGAFQMAKPSDMIPELQGRLPIRVELEALTADDFKRILTEPHASLTEQQRELLKTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 + ++F++D+I+ +A A +N +IGARRL TVME+++E+IS+ AS+ ++V+DA Sbjct: 362 QVTIEFSDDAIERIAKAAWQVNEKTENIGARRLHTVMEKLMEEISYDASEQAGTSLVVDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV H+G + D+ +IL Sbjct: 422 AYVEKHLGALVEDEDLSRYIL 442 >gi|332142914|ref|YP_004428652.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas macleodii str. 'Deep ecotype'] gi|332143041|ref|YP_004428779.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas macleodii str. 'Deep ecotype'] gi|238693267|sp|B4RY96|HSLU_ALTMD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|327552936|gb|AEA99654.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas macleodii str. 'Deep ecotype'] gi|327553063|gb|AEA99781.1| ATP-dependent protease ATP-binding subunit HslU [Alteromonas macleodii str. 'Deep ecotype'] Length = 442 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 230/441 (52%), Positives = 308/441 (69%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDR+IIGQQDAKRAV+IALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDRHIIGQQDAKRAVSIALRNRWRRMQLEPELRQEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL D+A+ + +E+ +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLADIAVKMTKENEMKKVKFRA 123 Query: 127 SINAEERILDALVG--KTATSN--------TREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ + A N TR+ FRKKLR G++ DKEI+I+VA + Sbjct: 124 EEAAEERILDVLLPPPEDAWGNKEDVEDRGTRQAFRKKLRQGDLDDKEIEIDVALPQVGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F + GS +KKK ++ +++ L+ +E+ RL++ + + Sbjct: 184 EIMAPPGMEEM-TNQLQGMFQNLSGS-QKKKKKLKIKEALKLLIEEEAARLVNQEDLKEK 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ VE +GIVF+DE DKI R+ N VSREGVQRDLLPLVEGS+VSTK+G + TDHI Sbjct: 242 AIESVEQHGIVFVDEIDKICKREGNNSGDVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAF +S+P+DL+PE+QGR P+RV L +L DF+ ILT+ ++L QY LMKTE Sbjct: 302 LFIASGAFQMSKPSDLIPELQGRLPIRVELSALKVGDFKRILTEPNASLTQQYIALMKTE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ + F + I +A+ A +N +IGARRL TV+ER++EDISF AS+ ++ VIDA Sbjct: 362 GVDIRFDDSGIQRIAEAAWQVNERTENIGARRLHTVLERLMEDISFDASEKSGESFVIDA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 +YV H+ D+ FIL Sbjct: 422 DYVNNHLETLVDNEDLSRFIL 442 >gi|167585119|ref|ZP_02377507.1| ATP-dependent protease ATP-binding subunit [Burkholderia ubonensis Bu] Length = 447 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/447 (48%), Positives = 317/447 (70%), Gaps = 17/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTREAEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171 A+ AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQ 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + + PG + + +FS +G G+K + ++ + + L +E+ ++++ + Sbjct: 183 PTIGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKISEALKLLTDEEAAKMLNEE 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290 V ++Q VE GIVFLDE DKI +R++ G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNNEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF IL T+++L+ QY+ Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVSTDASLVKQYQ 360 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+F ED I LA++A +N +IGARRL TV+E++LE++SF+A + + Sbjct: 361 ALLATEDVQLEFAEDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGE 420 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 421 CVTIDAKYVERALGEVSQDEDLSRYVL 447 >gi|87200647|ref|YP_497904.1| ATP-dependent protease ATP-binding subunit [Novosphingobium aromaticivorans DSM 12444] gi|87136328|gb|ABD27070.1| heat shock protein HslVU, ATPase subunit HslU [Novosphingobium aromaticivorans DSM 12444] Length = 433 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 230/433 (53%), Positives = 314/433 (72%), Gaps = 4/433 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+ IV LD +I+GQ AK+AVA+ALRNRWRRQ+L ADLRDE+ PKNIL++GPTG G Sbjct: 4 SLTPKAIVRALDEHIVGQTAAKKAVAVALRNRWRRQRLSADLRDEVSPKNILMIGPTGCG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI RDLV+ AI + +E RRD VRE Sbjct: 64 KTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIARDLVEEAIRLEKERRRDAVREA 123 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP-GG 184 AS A +R+L ALVG A+ TRE F+ +L DG ++D E++IEV D S +IP G Sbjct: 124 ASKAAMDRLLKALVGDGASEATRESFKARLSDGSMNDVEVEIEVEDAPS--MPMEIPGMG 181 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +G++NLS++ K G K+ +M V + +L+ +E+++ +D D V R++I+ E Sbjct: 182 GGIGMINLSDMMGKAFGKQNLKRRKMRVVDAWDKLVDEEAEKRMDQDDVAREAIRNAETN 241 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDH+LFIASGAF Sbjct: 242 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPMKTDHVLFIASGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+D+LPE+QGR P+RV L +L++ DF IL++T +NL+ QY+ L+ TE + LD T Sbjct: 301 HVAKPSDMLPELQGRLPIRVELNALSEDDFVRILSETRANLVEQYRALIATENVTLDITP 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 +I A+A A +N +V +IGARRLQTVME++LE++SF A D +TV++D YV + Sbjct: 361 AAIRAIARTAAQVNESVENIGARRLQTVMEKLLEEVSFDAEDRAGETVMVDEAYVADKLA 420 Query: 425 DFPSETDMYHFIL 437 + D+ +IL Sbjct: 421 NLAGNADLSKYIL 433 >gi|31340164|sp|Q8D2S7|HSLU_WIGBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 443 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 13/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L LR E+ PKNIL++GPTGVG Sbjct: 3 NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R ++ R + Sbjct: 63 KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 122 Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A AEER+LD L+ K S TR+ FRKKL+ E+ DKEI+I +A T Sbjct: 123 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 182 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +K + ++ +++ L+ +ES +LI+++ + Sbjct: 183 GVEIMAPPGMEEM-TSQLQSMFKNLAGQKQKPR-KIKIKEAMRLLIEEESAKLINLEEIK 240 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +++ VE GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 241 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF V+ P+DL+PE+QGR P+RV L +L DF ILT+ ++L QY LM Sbjct: 301 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 360 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+I+ FT++ I +A+ A +N + +IGARRL T++ER++E++S++AS+ K + I Sbjct: 361 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 420 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YV H+ S+ D+ FIL Sbjct: 421 DADYVSNHLDKLVSDEDLSRFIL 443 >gi|319789318|ref|YP_004150951.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio ammonificans HB-1] gi|317113820|gb|ADU96310.1| heat shock protein HslVU, ATPase subunit HslU [Thermovibrio ammonificans HB-1] Length = 480 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/464 (46%), Positives = 320/464 (68%), Gaps = 38/464 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR IV ELD+Y++GQ++AK+AVAIALRNRWRRQ+LP ++RDE++PKNI+++GPTGVGK Sbjct: 22 LTPRRIVEELDKYVVGQREAKKAVAIALRNRWRRQRLPEEMRDEVVPKNIIMIGPTGVGK 81 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APFIKVE TKFTE+GYVGR+VE IIRDLV++A+N+V+E + +V E+A Sbjct: 82 TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVNMVKEEKMAQVEERA 141 Query: 127 SINAEERILDALVG------KTATSNTREVF--------------------------RKK 154 A ER+ + +V + + N ++F +K Sbjct: 142 RELAYERLAEYMVPEPKHPQQQSVQNLFDIFFPSPARQKDHDYEAELSRLKDERNRIKKL 201 Query: 155 LRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 L++G++ D+ ++I V +T+ I+ + G S NL ++ S ++ +K + +M V+ Sbjct: 202 LKEGKLDDEIVEIPVTVETTPGINVVGLGGDIS----NLQDVLSSILPKPKKLR-KMKVK 256 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L ++E+ +LIDMD V R++I EN GI+F+DE DK+ +R+ G VSREGVQR Sbjct: 257 EAIRYLTQEEASKLIDMDEVIREAIDRAENQGIIFIDEIDKVASREGARGPDVSREGVQR 316 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 DLLP+VEGS VSTKYG + TDH+LFIA+GAFHV++P+DLLPE+QGRFP+RV LK L K D Sbjct: 317 DLLPIVEGSKVSTKYGLVRTDHMLFIAAGAFHVAKPSDLLPELQGRFPIRVELKPLTKED 376 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ ++ L QYK L++TEG+ L+FT D I+ +A +A N +IGARRL TVM Sbjct: 377 FVRILTEPKNALTKQYKALLETEGVELEFTPDGIEEIARIAEEANERAENIGARRLHTVM 436 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LE++SF A +++ + VV+D ++VR + D + D+ ++L Sbjct: 437 EKLLEEVSFMAPEMKGQKVVVDRDFVREKLSDIIQDEDLTKYVL 480 >gi|32491026|ref|NP_871280.1| ATP-dependent protease ATP-binding subunit HslU [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166232|dbj|BAC24423.1| hslU [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 451 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 13/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+ IV ELD +IIGQ DAK+AVAIALRNRWRR +L LR E+ PKNIL++GPTGVG Sbjct: 11 NMTPKNIVKELDSHIIGQHDAKKAVAIALRNRWRRMKLDDSLRHEVTPKNILMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D ++ ++R ++ R + Sbjct: 71 KTEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDASVKMIRLQSIEKNRFR 130 Query: 126 ASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A AEER+LD L+ K S TR+ FRKKL+ E+ DKEI+I +A T Sbjct: 131 AEELAEERVLDVLIPSVKNDWGNSENKKEPSKTRQNFRKKLKTKELDDKEIEINLASTPI 190 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G +K + ++ +++ L+ +ES +LI+++ + Sbjct: 191 GVEIMAPPGMEEM-TSQLQSMFKNLAGQKQKPR-KIKIKEAMRLLIEEESAKLINLEEIK 248 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 +++ VE GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TD Sbjct: 249 EKAVEAVEQNGIVFIDEIDKICKRGEISGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 308 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIASGAF V+ P+DL+PE+QGR P+RV L +L DF ILT+ ++L QY LM Sbjct: 309 HILFIASGAFQVANPSDLIPELQGRLPIRVELSALTIEDFEKILTEPSASLTKQYSALMA 368 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEG+I+ FT++ I +A+ A +N + +IGARRL T++ER++E++S++AS+ K + I Sbjct: 369 TEGVIISFTQEGIKKIAEAACQVNDSTENIGARRLHTILERLMEEVSYNASEWNGKKINI 428 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA+YV H+ S+ D+ FIL Sbjct: 429 DADYVSNHLDKLVSDEDLSRFIL 451 >gi|94986778|ref|YP_594711.1| ATP-dependent protease ATP-binding subunit HslU [Lawsonia intracellularis PHE/MN1-00] gi|166221590|sp|Q1MRI6|HSLU_LAWIP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|94731027|emb|CAJ54390.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lawsonia intracellularis PHE/MN1-00] Length = 433 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/433 (49%), Positives = 310/433 (71%), Gaps = 5/433 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD+YIIGQ+ AKR VAIA+RNRWRRQQL LRDE+ P+NI+++GPTGVGK Sbjct: 4 LTPREIVVELDKYIIGQEQAKRMVAIAVRNRWRRQQLQEGLRDEVAPRNIIMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APFIKVE TK+TE+GYVGR+VE +IRDL++++IN+VR+ ++VRE+A Sbjct: 64 TEIARRLAKLCHAPFIKVEATKYTEVGYVGRDVESMIRDLMEISINLVRKEEAEKVRERA 123 Query: 127 SINAEERILDAL--VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 + AEER+LD L +G+ + TRE R R G + D+E+DIEV + + I ++PG Sbjct: 124 EVLAEERLLDLLLPIGENRDA-TREKLRSLFRQGHLKDREVDIEVQEQTQPIGILNVPGM 182 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 +G + + FS++ ++ +M V + L+ +ES+RL+D D + + + VE Sbjct: 183 EQIGN-QMKDAFSRIFPQKTHRR-KMKVSAAWEHLVGEESNRLVDNDKLTDLARERVEQM 240 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVF+DE DK+ + +SREGVQRDLLP+VEGS+V+TKYG I TDHILFIA+GAF Sbjct: 241 GIVFIDEIDKLASASQHRSSDISREGVQRDLLPIVEGSAVNTKYGLIKTDHILFIAAGAF 300 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H+S+P+DL+PE+QGRFP+R L++L K++F ILT+ ++ L QY+ L++TEG+ + FT+ Sbjct: 301 HLSKPSDLIPELQGRFPLRAELEALGKNEFYRILTEPDNALTRQYEALLETEGVKIVFTD 360 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D + ++ A ++N+ +IGARRL T+ME++L DISF A + T+ + EYV ++ Sbjct: 361 DGLKEISAFAEDVNTQTENIGARRLHTIMEKILADISFDAPEKFGTTLEVTKEYVVSYLE 420 Query: 425 DFPSETDMYHFIL 437 D + T++ FIL Sbjct: 421 DIRANTELSRFIL 433 >gi|160871613|ref|ZP_02061745.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella grylli] gi|159120412|gb|EDP45750.1| heat shock protein HslVU, ATPase subunit HslU [Rickettsiella grylli] Length = 498 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/447 (47%), Positives = 303/447 (67%), Gaps = 16/447 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P++IV ELDR+IIGQ +AKRA+AIALRNR RR L +LRDE+ PKNIL++GP+GV Sbjct: 54 IDLTPKQIVQELDRFIIGQNEAKRAIAIALRNRKRRMLLEPELRDEVTPKNILMIGPSGV 113 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I RR A++ G PF+K+E TKFTE+GY+GR+V+ I RDLVD A ++RE ++ Sbjct: 114 GKTEIGRRAAKITGCPFLKIEATKFTEVGYIGRDVDSIPRDLVDSAFKLLREEEITRLQP 173 Query: 125 QASINAEERILDALVGKT-ATSN-------------TREVFRKKLRDGEISDKEIDIEVA 170 Q AE +ILD V + AT N R VFRKKL+ G++ DK+I+IE+A Sbjct: 174 QVLEAAESKILDCFVPPSRATKNEAVDELKSKEKSIARNVFRKKLQAGQLDDKQIEIELA 233 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + + PG + L + + G+ R + RM V+ + ++E+ +L+D Sbjct: 234 ALPAGVEIMGPPGMEDM-TSQLQNMLQNI-GASRTRSRRMKVKDALMVIQKEEASKLLDE 291 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + R +I+ VE YGIVF+DE DK+ R +G VSREGVQRDLLPL+EG +VSTKYG Sbjct: 292 EDLKRKAIEWVEQYGIVFIDEIDKVCRRGETSGADVSREGVQRDLLPLIEGCTVSTKYGM 351 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGR P+RV LK+L DF IL + +++LI+QY+ Sbjct: 352 VRTDHILFIAAGAFHLSKPSDLVPELQGRLPIRVELKALTAKDFERILIEPQASLIVQYQ 411 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG++L+F + +I +A++A +LN +IGARRL TVMER+LE+ISF A+D +K Sbjct: 412 ALLNTEGLLLNFDKHAIQRIAEIAFDLNERTENIGARRLYTVMERLLEEISFEATDYTDK 471 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 + I+ YV H+ + D HFIL Sbjct: 472 NLTINVNYVDKHLTSLAQDHDTSHFIL 498 >gi|121611469|ref|YP_999276.1| ATP-dependent protease ATP-binding subunit HslU [Verminephrobacter eiseniae EF01-2] gi|166221615|sp|A1WRK1|HSLU_VEREI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|121556109|gb|ABM60258.1| heat shock protein HslVU, ATPase subunit HslU [Verminephrobacter eiseniae EF01-2] Length = 441 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/441 (49%), Positives = 300/441 (68%), Gaps = 11/441 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P+EIVSELD++I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 SMTPQEIVSELDKHIVGQSSAKRAVAIALRNRWRRQQVQGSLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG++V+ IIRDL D+A+ RES +VR + Sbjct: 63 KTEIARRLAKLADAPFIKVEATKFTEVGYVGKDVDSIIRDLADMAVKQTRESEMKKVRAR 122 Query: 126 ASINAEERILDALVGK---------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AE+RILD L+ A TR++FRKKLR+G + DK+I+I+V ++ + Sbjct: 123 AEDAAEDRILDVLIPPPRGADGAEPAADGTTRQMFRKKLREGLLDDKDIEIDVTESRPHL 182 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 P G L +FS+ G +++ ++ + + L +E+ +L++ + + Sbjct: 183 EIMG-PQGMEEMTEQLRSMFSQ-FGQDKRRTRKLKIAEAMKLLTDEEAGKLVNEEEIKTR 240 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++ E GIVF+DE DK+ R +G VSR+GVQRDLLPLVEG++VSTKYG I TDHI Sbjct: 241 ALANAEQNGIVFIDEIDKVATRQETSGADVSRQGVQRDLLPLVEGTTVSTKYGMIKTDHI 300 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL+ DF ILT T ++L+ QY+ L+ TE Sbjct: 301 LFIASGAFHLSRPSDLIPELQGRFPIRVELESLSVQDFEAILTQTHASLVKQYQALLATE 360 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 + L F I LA +A +N +IGARRL TVMER+L+++SF A+ L +TV ID Sbjct: 361 DVTLAFVPQGITRLACIAFEVNERTENIGARRLSTVMERLLDEVSFDATRLSGQTVTIDE 420 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV + D+ +IL Sbjct: 421 GYVDQRLQQLSLNEDLSRYIL 441 >gi|323701843|ref|ZP_08113513.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum nigrificans DSM 574] gi|323533147|gb|EGB23016.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum nigrificans DSM 574] Length = 464 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/463 (45%), Positives = 322/463 (69%), Gaps = 32/463 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV+ELD+YI+GQ AK+AVA+ALRNR+RR +LP DL DE++PKNIL++GPTGVG Sbjct: 3 DLTPRQIVAELDKYIVGQNKAKKAVAVALRNRYRRSKLPEDLIDEVVPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+ Sbjct: 63 KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKMEEVEER 122 Query: 126 ASINAEERILDALVG----KTATSNT---------------------------REVFRKK 154 A A+ERI++ L + T N RE R+K Sbjct: 123 ARRMADERIIEILAPMPNRPSQTKNPLEMLFGGGQQTQDDQAYEQQNSRIKFERETLREK 182 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 L GE+ ++ ++IEV DT++ + G +N+ ++ + +K+K ++SV++ Sbjct: 183 LERGELENEYLEIEVEDTNTPMFEVFTNSGVEEMGVNMQDVLGSIFPR-KKRKRKVSVRE 241 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L E+ +LIDMD + ++++ E +GI+FLDE DKI AR+ G VSR GVQRD Sbjct: 242 ARKILTSQEAQKLIDMDELTAEAVKRAEEHGIIFLDEIDKIAAREGSAGPDVSRGGVQRD 301 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++SDF Sbjct: 302 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRSDF 361 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 + IL + ++LI QY EL++TEG+ ++F+++S++ +AD+A +N +IGARRL T++E Sbjct: 362 QQILVEPRNSLIKQYTELLRTEGVNIEFSKNSLEEIADIAYTVNEQTENIGARRLHTILE 421 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LEDISF A +L+ +++ ID+ YV+ + D + D+ +IL Sbjct: 422 KLLEDISFEAPELKGQSLTIDSAYVQEKLKDVVANRDLSRYIL 464 >gi|260772033|ref|ZP_05880950.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio metschnikovii CIP 69.14] gi|260612900|gb|EEX38102.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio metschnikovii CIP 69.14] Length = 443 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/442 (50%), Positives = 304/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ+ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQEKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVGKT-----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ +S TR+VFRKKLR+G++ DKEI+I VA Sbjct: 124 EELAEERVLDALLPPARDAWGESEKTEQSSTTRQVFRKKLREGQLDDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G +KK+ + L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDTKKKRKLKIKE-ALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + TDH Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L+ DF+ ILT+ +++L QY LMKT Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSHDFKRILTEPKASLTEQYIALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + + FTED I +A+ A +N + +IGARRL TVMER++++IS+ A++ +VID Sbjct: 362 EQVDISFTEDGIKQIAEAAWQVNESTENIGARRLHTVMERLMDEISYEATERPGSQMVID 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +YV + + + D+ FIL Sbjct: 422 GDYVHDRLSELVEDEDLSRFIL 443 >gi|330839574|ref|YP_004414154.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas sputigena ATCC 35185] gi|329747338|gb|AEC00695.1| ATP-dependent hsl protease ATP-binding subunit hslU [Selenomonas sputigena ATCC 35185] Length = 472 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 223/460 (48%), Positives = 316/460 (68%), Gaps = 33/460 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL ++D+++PKNIL++G TGVGKT Sbjct: 16 TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 75 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+ Sbjct: 76 EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 135 Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159 AEERILD V + S RE RK+L GE Sbjct: 136 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 195 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217 + + I+IE+ D+ + + G+S+ + NL ++ + +M +KK+ ++SV Sbjct: 196 LEKEVIEIEIEDSGKPMVG--MFAGSSLESMGDNLQDMMANLMPKKQKKR-KVSVAAARK 252 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 ++E+ +L+DM+ V +I+ E GIVFLDE DK+ + G+G VSREGVQRD+LP Sbjct: 253 LFQQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILP 312 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ I Sbjct: 313 IVEGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRI 372 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+ +IGARRL T++E++L Sbjct: 373 LTEPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLL 432 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SF A +++EK V +DA YV + D D+ FIL Sbjct: 433 EDLSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 472 >gi|260886592|ref|ZP_05897855.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena ATCC 35185] gi|260863735|gb|EEX78235.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sputigena ATCC 35185] Length = 466 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 223/460 (48%), Positives = 316/460 (68%), Gaps = 33/460 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV ELDRYI+GQ++AKRAVAIALRNRWR +QL ++D+++PKNIL++G TGVGKT Sbjct: 10 TPRQIVEELDRYIVGQKEAKRAVAIALRNRWRSRQLDVAMQDDVIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APFIKVE TKFTE+GYVGR+VE I+RDL + A+ +VR+ R ++V+E+A+ Sbjct: 70 EIARRLARLVKAPFIKVEATKFTEVGYVGRDVESIVRDLAETAVRMVRQERMEKVQERAA 129 Query: 128 INAEERILDALVGKTATSNT----------------------------REVFRKKLRDGE 159 AEERILD V + S RE RK+L GE Sbjct: 130 ELAEERILDVFVPQPKKSQNPLGKLFGGSDDEEKESSEENKEPKYAAGREWVRKRLLKGE 189 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217 + + I+IE+ D+ + + G+S+ + NL ++ + +M +KK+ ++SV Sbjct: 190 LEKEVIEIEIEDSGKPMVG--MFAGSSLESMGDNLQDMMANLMPKKQKKR-KVSVAAARK 246 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 ++E+ +L+DM+ V +I+ E GIVFLDE DK+ + G+G VSREGVQRD+LP Sbjct: 247 LFQQEEAAKLVDMEEVKDAAIRAAEKSGIVFLDEIDKVAVKGQGSGPDVSREGVQRDILP 306 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF+ I Sbjct: 307 IVEGSTVMTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLQKEDFQRI 366 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ ++ L+ QYK L+ TEGI LDF +D+I+ LA +A ++N+ +IGARRL T++E++L Sbjct: 367 LTEPQNALLKQYKALLATEGIALDFADDAIERLAQIACDVNAQTENIGARRLHTILEKLL 426 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SF A +++EK V +DA YV + D D+ FIL Sbjct: 427 EDLSFDAPEMEEKEVRVDAAYVDKKLKDIAVNRDLSQFIL 466 >gi|171060508|ref|YP_001792857.1| ATP-dependent protease ATP-binding subunit HslU [Leptothrix cholodnii SP-6] gi|170777953|gb|ACB36092.1| heat shock protein HslVU, ATPase subunit HslU [Leptothrix cholodnii SP-6] Length = 451 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/453 (48%), Positives = 306/453 (67%), Gaps = 22/453 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P+EIV+ELDR+I+GQQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MSLTPQEIVAELDRHIVGQQQAKRAVAIALRNRWRRQQVDDKLRGEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APFIKVE TKFTE+GYVG++V+ I+RDLV+ AI RE + +R Sbjct: 61 GKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDSIVRDLVESAIKQERERQVTLMRS 120 Query: 125 QASINAEERILDALV--------------------GKTATSNTREVFRKKLRDGEISDKE 164 +A AE+RILD LV A + R+V RK+LR+G + DKE Sbjct: 121 RAEDAAEDRILDILVPPPRSAGRSDFGFLEPQATPAPAADNTARQVMRKRLREGTLDDKE 180 Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 I+I++AD + P G L LFS+ MG G++++ ++ + + L+ +E+ Sbjct: 181 IEIDLADAKPTLEIMG-PAGMEAMADQLKGLFSQ-MGQGKRQQRKVKIGEARRLLVDEEA 238 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 +L++ D ++ E GIVF+DE DK+ + + G VSR+GVQRDLLPLVEG+SV Sbjct: 239 QKLVNEDETRSRALLHTEQNGIVFIDEIDKVASSGNTQGADVSRQGVQRDLLPLVEGTSV 298 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 TKYG + TDHILFIASGAFHVS+P+DL+PE+QGRFP+RV L++L+ DF IL+ T ++ Sbjct: 299 QTKYGLVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELQALSVDDFEAILSSTHAS 358 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 LI QY+ L+ TEG+ L+F D++ LA +A ++N +IGARRL TV+ER+L++ISF A Sbjct: 359 LIKQYQALLATEGVTLEFAPDAVRRLAQIAFDVNERTENIGARRLATVLERLLDEISFDA 418 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L TV IDA V + + + D+ ++L Sbjct: 419 PGLAGSTVQIDAALVDRKLAELAANEDLSRYVL 451 >gi|323524456|ref|YP_004226609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1001] gi|323381458|gb|ADX53549.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1001] Length = 448 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/448 (48%), Positives = 312/448 (69%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTK 122 Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L+ G +++ S TR+ FRK+LR+G + DKEI+++V Sbjct: 123 AEDQAEDRILDILLPTARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 KTV IDA YV + + + D+ ++L Sbjct: 421 KTVQIDAAYVDRALSEVAEDEDLSRYVL 448 >gi|270159288|ref|ZP_06187944.1| heat shock protein HslVU ATPase subunit HslU [Legionella longbeachae D-4968] gi|269987627|gb|EEZ93882.1| heat shock protein HslVU ATPase subunit HslU [Legionella longbeachae D-4968] Length = 439 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/442 (52%), Positives = 308/442 (69%), Gaps = 14/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR ++ PA LR+E+MPKNIL++GPTGV Sbjct: 1 MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPA-LRNEIMPKNILMIGPTGV 59 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+ RE +V Sbjct: 60 GKTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEH 119 Query: 125 QASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ S T R+VFRK+LR+G +++ EI+IEV+ T I Sbjct: 120 LAEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGI 179 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V GS R K +M++ K L +E+ +LI+ D + Sbjct: 180 EIMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTR 237 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DK+ R ++G+G VSREGVQRDLLPLVEG++V+TKYG I +DH Sbjct: 238 AIENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDH 297 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM T Sbjct: 298 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMAT 357 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D ++V +D Sbjct: 358 EGLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVD 417 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 418 KAYVDKNLGQLVADEDLARYIL 439 >gi|289165888|ref|YP_003456026.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella longbeachae NSW150] gi|288859061|emb|CBJ12990.1| ATP-dependent hsl protease ATP-binding subunit HslU [Legionella longbeachae NSW150] Length = 440 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/442 (52%), Positives = 308/442 (69%), Gaps = 14/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGV 64 +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR ++ PA LR+E+MPKNIL++GPTGV Sbjct: 2 MTPREIVQELDKYIIGQDNAKRAVAIALRNRWRRMKIQDPA-LRNEIMPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ I+RDL D+A+ RE +V Sbjct: 61 GKTEIARRLAKLARAPFIKVEATKFTEVGYVGRDVDSILRDLADIAVKQEREFAMKKVEH 120 Query: 125 QASINAEERILDALVGKTATSNT--------REVFRKKLRDGEISDKEIDIEVADTSSDI 176 A AEERILD L+ S T R+VFRK+LR+G +++ EI+IEV+ T I Sbjct: 121 LAEDAAEERILDVLLPPPRGSLTPGEKDSTARQVFRKQLREGTLNENEIEIEVSATPVGI 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L +F +V GS R K +M++ K L +E+ +LI+ D + Sbjct: 181 EIMAPPGMEEM-TSQLQSMFQQV-GSHRTKTRKMTIAKAMQILREEEAAKLINEDDIKTR 238 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ VE GIVF+DE DK+ R ++G+G VSREGVQRDLLPLVEG++V+TKYG I +DH Sbjct: 239 AIENVEQNGIVFIDELDKVARRAENGSGGDVSREGVQRDLLPLVEGTTVTTKYGMIRSDH 298 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFHV++P+DL+ E+QGR P+RV L +L+ DF ILT+ ++L LQY LM T Sbjct: 299 ILFIASGAFHVAKPSDLIAELQGRLPIRVELSALSVEDFVRILTEPTASLTLQYSALMAT 358 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F E I +A+VA +N +IGARRL TVMER+LE +SF A+D ++V +D Sbjct: 359 EGLELTFDESGIRRIAEVAWQVNERTENIGARRLYTVMERLLEVVSFEATDKSGESVYVD 418 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV ++G ++ D+ +IL Sbjct: 419 KAYVDKNLGQLVADEDLARYIL 440 >gi|163859118|ref|YP_001633416.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella petrii DSM 12804] gi|229486074|sp|A9IH53|HSLU_BORPD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|163262846|emb|CAP45149.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella petrii] Length = 444 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 228/442 (51%), Positives = 304/442 (68%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD+YIIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 TMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVEEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Q Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRTQ 124 Query: 126 ASINAEERILDALVGKT----------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + SN R+ FRK+LR+G+ D EI+IE+A Sbjct: 125 AEDAAEDRILDALVPPSRGTSGEPERGEDSNARQTFRKRLREGKCDDLEIEIEIAQPVPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ + +KK +M V++ + ++ +E+ + I+ D + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKPKKMKVKEAFKLIVEEEAAKRINEDDLRT 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+SRP+DL+PE+QGRFP+RV L+SL DF IL+DT+++LI QY L+ T Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELESLTAQDFVRILSDTDASLIKQYSALLGT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + LDF D I+ LA++A ++N +IGARRL TVME++LE++SF A+ KT+ ID Sbjct: 363 EDVQLDFKPDGIERLAELAFSVNERTENIGARRLYTVMEKLLEELSFDATASSGKTITID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + S D+ ++L Sbjct: 423 AAYVDAQLSEAASSQDLARYVL 444 >gi|302392401|ref|YP_003828221.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium arabaticum DSM 5501] gi|302204478|gb|ADL13156.1| heat shock protein HslVU, ATPase subunit HslU [Acetohalobium arabaticum DSM 5501] Length = 467 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/468 (47%), Positives = 316/468 (67%), Gaps = 41/468 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV +LD+YI+GQ++AK++VA+ALRNR+RR+QL +L++E+MPKNIL++GPTGVGK Sbjct: 4 LTPRKIVEQLDKYIVGQEEAKKSVAVALRNRYRRRQLSTELKEEIMPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF KVEVTKFTE+GYVGR+VE +IRDLV AI +V+ R +EV ++A Sbjct: 64 TEIARRLAKLAQAPFAKVEVTKFTEVGYVGRDVESMIRDLVQTAIRMVKRERMEEVEDKA 123 Query: 127 SINAEERILDALVGKTATSNT---------------------------------REVFRK 153 AE+RILD L+ N RE R+ Sbjct: 124 EKLAEDRILDKLLPLPENENNSNPLGALFGNFGNEENNSSEVEDQEHLKRLKKRREELRE 183 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ D+ I+IEV + +S + ++ G+ V + ++ F V+G + K+ + Sbjct: 184 KLRAGELEDRVIEIEVEENNSQM--IEVFSGSGVEEMGVN--FQDVLGGMFPNQTKERKA 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSRE 269 S+++ L + E+ +LIDMD V ++I VE GI+FLDE DK+ + S +G VSRE Sbjct: 240 SIKEAREILKQQEAQKLIDMDEVSSEAISRVEESGIIFLDEIDKVAGDNASSSGPEVSRE 299 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V TK+G + TDHI FIA+GAFHVS+P DL+PE+QGRFP+RV L SL Sbjct: 300 GVQRDILPIVEGSTVMTKHGPVKTDHIFFIAAGAFHVSKPTDLIPELQGRFPIRVELSSL 359 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + +F+ ILT+ E+ L QYK L+ TE + ++FTE +I+ LA +A +N +IGARRL Sbjct: 360 TEENFKAILTEPENALTKQYKALLTTEDLEIEFTERAIEELASIAFQINEETENIGARRL 419 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E++LEDISF A ++ E ++ IDAEYV+ + D + D+ +IL Sbjct: 420 HTVLEKLLEDISFEAPEMSEDSIEIDAEYVQDKLSDIVEDKDLSRYIL 467 >gi|83721034|ref|YP_440722.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia thailandensis E264] gi|167579395|ref|ZP_02372269.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis TXDOH] gi|123726686|sp|Q2T277|HSLU_BURTA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|83654859|gb|ABC38922.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia thailandensis E264] Length = 447 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/449 (48%), Positives = 316/449 (70%), Gaps = 21/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEI--DIEV 169 A+ AE+RILD L VG A+ + TR+ FRK+LR+G++ DKEI DIE Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 DI P G + +FS +GSG+K++ ++ +++ L +E+ ++++ Sbjct: 183 PTVGMDIM---APPGMEEMTEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLN 238 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKY Sbjct: 239 DEEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKY 298 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ Q Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQ 358 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + Sbjct: 359 YQALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHA 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V IDA YV +G+ + D+ ++L Sbjct: 419 GQSVTIDAAYVDRALGEVSKDEDLSRYVL 447 >gi|85859270|ref|YP_461472.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophus aciditrophicus SB] gi|85722361|gb|ABC77304.1| ATP-dependent endopeptidase hsl ATP-binding subunit [Syntrophus aciditrophicus SB] Length = 460 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/459 (49%), Positives = 318/459 (69%), Gaps = 30/459 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIV +LD++IIGQ DAKRAVAIALRNRWRRQ +P +LRDE+ PKNI+++GPTGVG Sbjct: 5 SLTPAEIVEKLDQHIIGQADAKRAVAIALRNRWRRQNVPDELRDEIAPKNIIMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ +PF+KVE +KFTE+GYVGR+VE +IRDLVD+A+N+VRE +++V + Sbjct: 65 KTEIARRLAKIDNSPFLKVEASKFTEVGYVGRDVESMIRDLVDLAVNMVREEEQEKVLAR 124 Query: 126 ASINAEERI-------------LDALVGKTAT-----------SNTREVFRKKLRDGEIS 161 A+ AEER+ +D ++ + +TRE R+ L DG+++ Sbjct: 125 AAEIAEERLLDLLLPPKPVERNVDEMMADHSQLPEKSEQAKPYDSTREKLRRLLHDGKLN 184 Query: 162 DKEIDIEVADTSSD--ISNFDIPGGASVGILNLSELFSKVMGSGRKKKI-RMSVQKCYPE 218 + +D+E+ +T S I F G +G LNL E+F ++ +KKKI R++V + Sbjct: 185 GRYVDLELTETRSAPMIEIFSSSGVEDLG-LNLKEMFGNMLP--QKKKISRVNVTEALEI 241 Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L +E+ RL+DMD V R ++ VE GI+FLDE DK+V D+ +G VSREGVQRDLLP+ Sbjct: 242 LTEEEAQRLVDMDKVTRTALDRVEQSGIIFLDEIDKVVGSDTPSGPDVSREGVQRDLLPI 301 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+V+T+YG + TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L SL K +F IL Sbjct: 302 VEGSNVNTRYGMVRTDHILFIAAGAFSSSKPSDLIPELQGRFPIRVELDSLGKEEFIRIL 361 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + + LI QY E+M TEG+ L FT+DSI +ADVA +N +IGARRL T+ME +LE Sbjct: 362 KEPNNALIKQYTEMMATEGVSLFFTDDSIAEIADVAAVVNERTENIGARRLYTIMEILLE 421 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 DISF+A L + VVID +YV + D + D+ +IL Sbjct: 422 DISFNAPGLSGQKVVIDEQYVEDKLCDIIEDEDLSRYIL 460 >gi|167617495|ref|ZP_02386126.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis Bt4] Length = 444 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/448 (48%), Positives = 316/448 (70%), Gaps = 21/448 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEI--DIEVA 170 + AE+RILD L VG A+ + TR+ FRK+LR+G++ DKEI DIE Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 DI P G + +FS +GSG+K++ ++ +++ L +E+ ++++ Sbjct: 181 TVGMDIM---APPGMEEMTEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLND 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 237 EEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY Sbjct: 297 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + Sbjct: 357 QALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V IDA YV +G+ + D+ ++L Sbjct: 417 QSVTIDAAYVDRALGEVSKDEDLSRYVL 444 >gi|289548465|ref|YP_003473453.1| heat shock protein HslVU, ATPase HslU [Thermocrinis albus DSM 14484] gi|289182082|gb|ADC89326.1| heat shock protein HslVU, ATPase subunit HslU [Thermocrinis albus DSM 14484] Length = 448 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 220/446 (49%), Positives = 317/446 (71%), Gaps = 16/446 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P IV EL RY++GQ++AK+AVAIALRNRWRRQ+LP +RDE+ PKN+L++GPT Sbjct: 8 LLEELTPARIVEELSRYVVGQEEAKKAVAIALRNRWRRQKLPEHIRDEVAPKNLLMIGPT 67 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L APF+KVE TK+TEIGYVGR+VE ++R+LV+V+ +V++ + V Sbjct: 68 GVGKTEIARRLAQLIKAPFVKVEATKYTEIGYVGRDVESMVRELVEVSYQMVKQEKLQSV 127 Query: 123 REQASINAEERILDALVGKTATS--------NTREVFRKKLRDGEISDKEIDIEVADTSS 174 RE+A AEERILD LV + + + RE R+KLR GE+ +K ++I+V + Sbjct: 128 RERARRAAEERILDYLVPQQLSFGHRSPQDLSRREAIREKLRSGELDEKYVEIDVQEKMP 187 Query: 175 DISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 I P G L E ++G SGRK++ ++ V++ L ++E+++LID + Sbjct: 188 PIVGIAGPPGLE----ELEEQIRNMLGGVLSGRKRR-KVKVKEALHLLEQEEAEKLIDQE 242 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V R++I EN+GI+F+DE DKI + G G GVSREGVQRDLLP+VEG+ V TKYG + Sbjct: 243 EVAREAIYRAENFGIIFIDEIDKIAIKTPGVGPGVSREGVQRDLLPIVEGTVVKTKYGPV 302 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L K DF+ IL + + L QY E Sbjct: 303 RTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKPLTKEDFKRILVEPRNALTKQYIE 362 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+KTEG+ L+FT+D+I+A+A +A +N+ + +IGARRL T+ME++LEDISF+A +L + Sbjct: 363 LLKTEGVQLEFTDDAIEAIAQLAEEVNNRMENIGARRLHTLMEKLLEDISFNAPELSGQR 422 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ID +V+ + + ++ +IL Sbjct: 423 IIIDERFVKAKLEGLARDVEVSKYIL 448 >gi|108761314|ref|YP_631222.1| ATP-dependent protease ATP-binding subunit HslU [Myxococcus xanthus DK 1622] gi|123247816|sp|Q1D801|HSLU_MYXXD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|108465194|gb|ABF90379.1| heat shock protein HslVU, ATPase subunit HslU [Myxococcus xanthus DK 1622] Length = 459 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/457 (47%), Positives = 315/457 (68%), Gaps = 27/457 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PRE+VSELDRYI+GQ AKRAVAIALRNRWRRQQ+ DLRDE+ PKNI+++GPTGVGK Sbjct: 4 FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE ++V +A Sbjct: 64 TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 123 Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164 AE+R+++ + G S++ RE FR +LR G + D E Sbjct: 124 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 183 Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 +++E A++S + F G +G+ NL +LF V G + ++ R+ V + L ++E Sbjct: 184 VEVETAESSPTFMRGFSGQGMEEIGV-NLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEE 242 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVE 280 + +L+D D V R+++ E GI+F+DE DKI +R+ G G G VSREGVQRD+LP+VE Sbjct: 243 AAKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVE 302 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L D IL + Sbjct: 303 GSTINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILRE 362 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 +++L+ QY L+ TEG+ L FT+D++ LA +A N + +IGARRL T++ER+L+++ Sbjct: 363 PKNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEV 422 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SFSAS++ + +DA YVR + + D+ +IL Sbjct: 423 SFSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 459 >gi|290968894|ref|ZP_06560431.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781190|gb|EFD93781.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera genomosp. type_1 str. 28L] Length = 457 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/458 (47%), Positives = 309/458 (67%), Gaps = 22/458 (4%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M T +P+EIV EL++YI+GQ +AK++VAIALRNRWRR+ LPAD++DE++PKNILL+G Sbjct: 1 MMGTAELTPKEIVRELNKYIVGQAEAKKSVAIALRNRWRRKHLPADMQDEIIPKNILLIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+L GAPFIKVE TK+TE+GYVGR+VEQIIRDLV A+ +V+E Sbjct: 61 PTGVGKTEIARRLAKLVGAPFIKVEATKYTEVGYVGRDVEQIIRDLVTNAVRMVQEQESR 120 Query: 121 EVREQASINAEERILDALVGK--------------------TATSNTREVFRKKLRDGEI 160 ++QA A +RIL K + S+ R+ +K+ + Sbjct: 121 RFQQQAEEAANKRILQIFWPKKEHAADDDHKESTSCTDSVVSVGSDKRQAMLEKISSHQW 180 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 +KEI+++V+ + + N E+ +M RKK+ +M+V K Sbjct: 181 DEKEIEVKVSPQERPVQGVLMGSSNEELTNNFQEMLGSIM-PKRKKRKKMTVAKAREIFR 239 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLV 279 ++E ++ +DMD V +I E GIVF+DEFDKI + G G VSREGVQRD+LP+V Sbjct: 240 QEELEKCLDMDVVIEKAITATEQAGIVFIDEFDKIAEKSRGGGSPDVSREGVQRDILPIV 299 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG++V+TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL DF+ ILT Sbjct: 300 EGATVNTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSLTAEDFKRILT 359 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + +L+ QYK L++T+G+ LDFT + I+ALA+ A +N +IGARRL T++E++LED Sbjct: 360 EPNQSLVKQYKALLQTDGVDLDFTAEGIEALAEYAYRVNLETENIGARRLHTMLEKILED 419 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 I+F+A D+ EKT+ + E+V +G TD+ H+IL Sbjct: 420 IAFAAPDITEKTIPVTKEFVDEKLGTVVDNTDLSHYIL 457 >gi|307728177|ref|YP_003905401.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1003] gi|307582712|gb|ADN56110.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1003] Length = 448 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/448 (48%), Positives = 311/448 (69%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+ RES +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEIAVKQTRESEMRKVRTK 122 Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L+ G +++ S TR+ FRK+LR+G + DKEI+++V Sbjct: 123 AEDQAEDRILDILLPSARPVGFGSSSSAADTADEGSTTRQTFRKRLREGLLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SFSA + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV IDA YV + + + D+ ++L Sbjct: 421 NTVKIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|220904285|ref|YP_002479597.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254802302|sp|B8IZJ2|HSLU_DESDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|219868584|gb|ACL48919.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 437 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/437 (47%), Positives = 310/437 (70%), Gaps = 7/437 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+EL+++++GQ+ AKR VA+A+RNRWRRQ LP+DLRDE+ PKNI+++GPTGVG Sbjct: 3 TLTPREIVAELNKFVVGQEQAKRMVAVAVRNRWRRQHLPSDLRDEVSPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VR+ VR+ Sbjct: 63 KTEIARRLARLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVRDEENARVRKA 122 Query: 126 ASINAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFD 180 A AE R++D L+ G+ ++TRE ++ R G + ++E+++EV + + F Sbjct: 123 AEAAAESRLMDLLLPNSFGQEERASTREKLLQQFRLGFLDEREVEMEVTEQGGGGVDIFA 182 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 IPG +G + ++FSK ++ +M ++ + L+++ES +L+D D + + + + Sbjct: 183 IPGMEQMG-GQVKDMFSKAFPPKHSRR-KMKIRDAFNVLVQEESGKLVDQDALSQRAKER 240 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VE GI+F+DE DKI + +SREGVQRDLLP+VEGSSV+TKYG I TDHILFIA Sbjct: 241 VEQTGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSSVNTKYGMIRTDHILFIA 300 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAFH S+P+D++PE+QGRFP+RV L++L + +F ILT+ ++ L QY+ L+ TE I L Sbjct: 301 AGAFHFSKPSDMIPELQGRFPLRVELQALGREEFLRILTEPDNALTKQYEALLGTEQIRL 360 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT D ++ +A A ++NS +IGARRL T+ME++L DISF A D+ +V++ +YV Sbjct: 361 SFTMDGLEEIAAFAEDINSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNKDYVV 420 Query: 421 LHIGDFPSETDMYHFIL 437 H+ D + D+ +IL Sbjct: 421 EHLQDVRGDQDLTQYIL 437 >gi|258544137|ref|ZP_05704371.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium hominis ATCC 15826] gi|258520645|gb|EEV89504.1| heat shock protein HslVU, ATPase subunit HslU [Cardiobacterium hominis ATCC 15826] Length = 456 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 226/449 (50%), Positives = 308/449 (68%), Gaps = 18/449 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+ +R E+ PKNIL++GPTGV Sbjct: 10 LNMTPREIVEELDRHIIGQKAAKRAVANALRSRWRRRQIAEPMRSEITPKNILMIGPTGV 69 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+V+ IIRDLV+ ++ + RE R +V+ Sbjct: 70 GKTEIARRLAKLAEAPFVKVEATKFTEVGYVGRDVDSIIRDLVETSLKLERERARKQVQT 129 Query: 125 QASINAEERILDALV--GKTATS-----------NTREVFRKKLRDGEISDKEIDIEVAD 171 +A A ER+LDALV K ATS R+ +R+++ E++DK I+IEV D Sbjct: 130 KAREAALERVLDALVPLAKGATSWHDGANVPEDNPARKTYRERILREELNDKIIEIEVRD 189 Query: 172 TSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 T + ++ +I P G LSELF +G R K ++ + +L +E+D+L+ Sbjct: 190 TPTS-AHVEIMAPPGMEDMSSQLSELFQN-LGKQRTSKQKIKIADALVQLAEEEADKLVS 247 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + +I E GIVF+DE DK+ R G VSREGVQRDLLPLVEGS+VSTKYG Sbjct: 248 EADIKQQAIANAEQNGIVFIDEIDKVAKRSDVGGADVSREGVQRDLLPLVEGSTVSTKYG 307 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I TDHILFIASGAFH+++P+DL+PE+QGR PVRV L +LN DFR ILT+ + +LI QY Sbjct: 308 MIKTDHILFIASGAFHLAKPSDLIPELQGRMPVRVELDALNVDDFRRILTEPDHSLIKQY 367 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 L+ TE + L+FT+D I+ +A++A ++N T +IGARRL T+MER+ E +SF A+D + Sbjct: 368 TALLATESLHLEFTDDGIEKIAEIAYHVNKTTENIGARRLHTLMERLTESLSFEAADRPD 427 Query: 410 -KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA YV +G+ D+ F+L Sbjct: 428 GDHIRIDAAYVENALGELSQNEDLSRFVL 456 >gi|27804891|gb|AAO22925.1| HslU-like protein [Myxococcus xanthus] Length = 465 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/457 (47%), Positives = 315/457 (68%), Gaps = 27/457 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PRE+VSELDRYI+GQ AKRAVAIALRNRWRRQQ+ DLRDE+ PKNI+++GPTGVGK Sbjct: 10 FTPREVVSELDRYIVGQNAAKRAVAIALRNRWRRQQVDDDLRDEIHPKNIIMIGPTGVGK 69 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ AI +VRE ++V +A Sbjct: 70 TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMIRDLVEAAIALVREEETEKVGPRA 129 Query: 127 SINAEERILDALVGKTATSNT----------------------REVFRKKLRDGEISDKE 164 AE+R+++ + G S++ RE FR +LR G + D E Sbjct: 130 EELAEDRLIELMQGGGVKSSSATPPFGFAPPPPPPVQRVSDSAREKFRAQLRAGTLDDVE 189 Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 +++E A++S + F G +G+ NL +LF V G + ++ R+ V + L +++ Sbjct: 190 VEVETAESSPTFMRGFSGQGMEEIGV-NLQDLFKNVPGMNKTRRRRVRVPEALQLLRKEK 248 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVE 280 + +L+D D V R+++ E GI+F+DE DKI +R+ G G G VSREGVQRD+LP+VE Sbjct: 249 AAKLVDPDRVQREAVARAEMNGIIFIDEIDKIASREGGKGGGGPDVSREGVQRDILPIVE 308 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+++TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L D IL + Sbjct: 309 GSTINTKYGVVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTGEDLVRILRE 368 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 +++L+ QY L+ TEG+ L FT+D++ LA +A N + +IGARRL T++ER+L+++ Sbjct: 369 PKNSLLRQYTALLSTEGVRLSFTDDAVTELARIAQQANESTANIGARRLHTILERLLDEV 428 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SFSAS++ + +DA YVR + + D+ +IL Sbjct: 429 SFSASEMGPRDFQVDAAYVRERLAAIVQDEDLSRYIL 465 >gi|295675157|ref|YP_003603681.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1002] gi|295435000|gb|ADG14170.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. CCGE1002] Length = 448 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 214/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122 Query: 126 ASINAEERILDALV--------GKTATSN--------TREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L+ G + +S TR+ FRK+LR+G++ DKEI+++V Sbjct: 123 AGDLAEDRILDILLPTARPVGFGSSTSSTDTADEGSTTRQTFRKRLREGQLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKSKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + + D+ ++L Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|320105389|ref|YP_004180979.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus saanensis SP1PR4] gi|319923910|gb|ADV80985.1| heat shock protein HslVU, ATPase subunit HslU [Terriglobus saanensis SP1PR4] Length = 534 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 220/446 (49%), Positives = 305/446 (68%), Gaps = 45/446 (10%) Query: 4 TFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 TF +PREIV+ELD+Y++GQQ AKRAVAIALRNR RRQ+LP +L D++MPKNI+++GPT Sbjct: 15 TFEEMTPREIVAELDKYVVGQQAAKRAVAIALRNRQRRQKLPPELADDIMPKNIIMIGPT 74 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L +PF+KVE +KFTE+GYVGR+VE IIRDL ++AI++VRE + +EV Sbjct: 75 GVGKTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIIRDLAEIAIDMVREEKMEEV 134 Query: 123 REQASINAEERI--------------------------------LDALVGKTATSNTREV 150 ++A +NAEER+ D +T S TRE Sbjct: 135 EDKAEMNAEERLLDLLLPPSPVTTPTPSNPEEVLAEPVALEAEGTDKAKEETPGSRTREK 194 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPG---------GASVGILNLSELFSKVMG 201 R + R+G++ ++ ++I+V D + NF++ G G +NL ++ + G Sbjct: 195 LRMQFREGKLDERIVEIDVRDRNQ--PNFEVVGVQGGDDADATGPNGGMNLKDMLPGLFG 252 Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261 R +K +M V + + L+ +E RLIDMD V R +I VE+ GIVFLDE DKI R+ G Sbjct: 253 P-RSRKRKMKVAEAFEYLISEEESRLIDMDQVTRVAIDRVEDSGIVFLDEIDKIAGREGG 311 Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321 +G +SREGVQRD+LP+VEG++V+TKYG I+TDHILFIA+GAFHVS+P+DL+PE+QGRFP Sbjct: 312 HGPDISREGVQRDILPIVEGTTVNTKYGMISTDHILFIAAGAFHVSKPSDLIPELQGRFP 371 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 +RV L SL DF ILT+ +S+L+ Q LM TEG+ L+FT +++ +A A N+N Sbjct: 372 IRVELHSLTVEDFVRILTEPKSSLVKQSIALMGTEGLKLEFTPEALSEMASFAFNVNEQT 431 Query: 382 GDIGARRLQTVMERVLEDISFSASDL 407 +IGARRL T+MERVL++ISF A D+ Sbjct: 432 ENIGARRLHTIMERVLDEISFQAPDI 457 >gi|51246547|ref|YP_066431.1| ATP-dependent protease ATP-binding subunit [Desulfotalea psychrophila LSv54] gi|62286794|sp|Q6AJQ6|HSLU_DESPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|50877584|emb|CAG37424.1| probable ATP-dependent protease, ATP-binding subunit HslU [Desulfotalea psychrophila LSv54] Length = 457 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 217/459 (47%), Positives = 319/459 (69%), Gaps = 24/459 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M ++ + +P+E ++ELDRYI+GQ AKR+VAIALRNRWRRQQ+P+ LR+E+ PKNI+++G Sbjct: 1 MTISSSLTPKETLAELDRYIVGQAAAKRSVAIALRNRWRRQQVPSPLREEIAPKNIIMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDLV++AI++V++ + Sbjct: 61 PTGVGKTEIARRLASLAQSPFIKVEASKFTEVGYVGRDVESMIRDLVELAISMVKDEEKK 120 Query: 121 EVREQASINAEERILDALVGKT-------------------ATSNTREVFRKKLRDGEIS 161 + A NAE+RILD L+ T A S+T+E FR+ LRDG++ Sbjct: 121 RIEGLAEANAEDRILDLLLPPTPVHSESSVDLLPASADVSAAGSSTKEKFRQMLRDGKL- 179 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 D+ +S ++ G + + + N+ + FS+ M + K+ +M V L Sbjct: 180 DEREVEVEVTETSQAPMVEVMGVSGMDDMQSNIQDAFSR-MFPKKTKQSKMKVPDALDVL 238 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPL 278 ++E ++L+DM+ V +++++ E GIVFLDE DK+ ++ S +G VSREGVQRDLLP+ Sbjct: 239 TKEEMEKLVDMEMVLKEALRRTEQSGIVFLDEIDKVASKGGSSHGPEVSREGVQRDLLPI 298 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEG++VSTKYG + TDHILFIASGAFHV++P+DL+PE+QGRFP+RV L+SL K +F IL Sbjct: 299 VEGATVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELESLGKDEFVRIL 358 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T+ E+ L QY L+ TEG+ L F +++I+ +A +AV +N + +IGARRL TV+ERVL+ Sbjct: 359 TEPENALTKQYIALLATEGVTLRFEDEAIEEIATIAVQVNESTEEIGARRLHTVVERVLD 418 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF A + +E V+ A+YVR + + + D+ +IL Sbjct: 419 VLSFDACEREESEFVVTAQYVRDQLSEIAEDQDLSRYIL 457 >gi|150021490|ref|YP_001306844.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho melanesiensis BI429] gi|149794011|gb|ABR31459.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho melanesiensis BI429] Length = 465 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/457 (46%), Positives = 320/457 (70%), Gaps = 28/457 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+EIV ELD++I+GQ++AK+AVAIA+RNR RRQ+LP + E+ PKNIL++GPTGVG Sbjct: 12 KLTPKEIVHELDKFIVGQREAKKAVAIAIRNRIRRQKLPEQWKKEITPKNILMIGPTGVG 71 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IR+LV++++N+V++ + +V E+ Sbjct: 72 KTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRELVEISVNMVKQRKMKKVEER 131 Query: 126 ASINAEERILDALV---GKTAT----------------------SNTREVFRKKLRDGEI 160 A +N EERILDAL+ KT S RE R+KLR GE+ Sbjct: 132 AKVNVEERILDALLPSRKKTQIPFANIFGMQPEKVQSIEESENLSAKREELRQKLRKGEL 191 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 + EI+IE+ +++ I +P +G ++LS + + RKK+ +M + L+ Sbjct: 192 DNDEIEIEIETSNTPIGFIGLPEMEDIG-MDLSNVLGNIFPKQRKKR-KMKISDAKKILL 249 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 E ++LIDMD ++++++ +N GI+F+DE DKI A+ SG+G VSR+GVQRDLLP+VE Sbjct: 250 PIEEEKLIDMDETIQEALEIAQNRGIIFIDEMDKIAAKTSGSGQDVSRQGVQRDLLPIVE 309 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++++TKYG + TD ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF IL + Sbjct: 310 GTTITTKYGPVRTDFILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLTEEDFVRILVE 369 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 E+ L QY+ L+ TEG+ L+F+ + I+ +A V+ LN + +IGARRL TV+E++LED+ Sbjct: 370 PENALTKQYQALLYTEGVQLEFSMEGINEIAKVSYRLNQKLENIGARRLYTVIEKILEDV 429 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A ++ EK V+ID ++V + D + D+ +IL Sbjct: 430 LFEAPEISEK-VIIDDKFVTERLKDIIEDEDLTSYIL 465 >gi|91781465|ref|YP_556671.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans LB400] gi|123169129|sp|Q146X0|HSLU_BURXL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|91685419|gb|ABE28619.1| Heat shock protein HslU [Burkholderia xenovorans LB400] Length = 448 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/448 (47%), Positives = 312/448 (69%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122 Query: 126 ASINAEERILDAL------VGKTATS----------NTREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L VG A+S TR+ FRK+LR+G + DKE++++V Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSGAADTVDEGSTTRQTFRKRLREGLLDDKEVELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ R+++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAARMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + + D+ ++L Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|198284455|ref|YP_002220776.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666220|ref|YP_002427122.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus ferrooxidans ATCC 23270] gi|226704514|sp|B7J8H7|HSLU_ACIF2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238689973|sp|B5ENS6|HSLU_ACIF5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|198248976|gb|ACH84569.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518433|gb|ACK79019.1| heat shock protein HslVU, ATPase subunit HslU [Acidithiobacillus ferrooxidans ATCC 23270] Length = 440 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/439 (49%), Positives = 304/439 (69%), Gaps = 10/439 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD+YIIGQ +AKRAVAIALRNRWRR Q+P L E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVQELDKYIIGQSEAKRAVAIALRNRWRRGQVPPPLHQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG++VE IIRDL + A++++R R+ +R++A Sbjct: 64 TEIARRLAQLANAPFIKVEATKFTEVGYVGKDVESIIRDLTETAVDMIRNERQVALRQRA 123 Query: 127 SINAEERILDALVGKTATSN-------TREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 AEERILD L+ S+ TR+ FRK LR+G++ +EI+IEV+ + Sbjct: 124 EELAEERILDILIPGPRDSSVPRSDEGTRQKFRKMLREGKLDAQEIEIEVSAPKGGVEIM 183 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 P G L E+FS M G+ R++V + L DE+ +L++ + V +++ Sbjct: 184 -APAGMEEMTNQLREMFSN-MAPGKTSTRRVTVSEAQRLLTDDEAAKLVNEEEVRALALE 241 Query: 240 MVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 V++ GIVF+DE DK+ R + G VSREGVQRDLLPLVEGS+VST+YG + TDHILF Sbjct: 242 RVQSGGIVFIDEIDKVAVRSGTQQGSDVSREGVQRDLLPLVEGSNVSTRYGVVKTDHILF 301 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+S+P+DL+PE+QGR P+RV L++L+ +D IL + E+ L+ QY L+ ++G+ Sbjct: 302 IASGAFHLSKPSDLIPELQGRLPIRVELEALSAADLVRILQEPENALVRQYGALLASDGL 361 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+D + +A++A +N V +IGARRL TVMER+LE+++F A D + +DA Y Sbjct: 362 ALHFTQDGVQRIAEIAQQVNERVENIGARRLHTVMERLLEEVAFVAPDGSTTALEVDAAY 421 Query: 419 VRLHIGDFPSETDMYHFIL 437 V + D + D+ +IL Sbjct: 422 VDSRLKDLAQDEDLSRYIL 440 >gi|21672818|ref|NP_660885.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654256|sp|Q9Z617|HSLU_BUCAP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21623470|gb|AAM68096.1| heat shock protein HslU [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 443 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/442 (49%), Positives = 302/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IVSEL+++IIGQ+ AK+AVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPPQIVSELNKFIIGQEQAKKAVAIALRNRWRRMQLNNELRHEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R ++ + + Sbjct: 64 TEIARRLAKLANSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRVKNIEKNKLRV 123 Query: 127 SINAEERILDALVGKTATS-----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175 EERILD LV + + NT +VFRKKLR+G + +KEI+I V ++ Sbjct: 124 EEIVEERILDVLVPRPKNNWTENEKNESLLNTLQVFRKKLREGILDEKEIEINVLASTMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF +G +K R+ ++ L +E+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLLKEEEAAKLINQEEIKK 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTKYG + TDH Sbjct: 242 EAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLVEGCTVSTKYGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF S P+DL+PE+QGR P++V L+ L +DF ILT+ +++ QYK LMKT Sbjct: 302 ILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILTEPTASITAQYKALMKT 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT++ I +A+ A +N ++ +IGARRL T++E+++EDISF+A D KT+ I+ Sbjct: 362 EGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMEDISFNACDNVGKTIEIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +EYV H+ S D+ FIL Sbjct: 422 SEYVGKHLDQLISNEDLGRFIL 443 >gi|317050675|ref|YP_004111791.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum indicum S5] gi|316945759|gb|ADU65235.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurispirillum indicum S5] Length = 441 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/440 (48%), Positives = 306/440 (69%), Gaps = 9/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P +IV+ELD+YIIGQ +AK+AVAIALRNRWRRQ+L + LR+E+ PKNI+++GPTGVG Sbjct: 3 QLTPSQIVAELDKYIIGQTEAKKAVAIALRNRWRRQRLDSFLREEISPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L +PFIKVE +KFTE+GYVGR+VE IIRDL + ++ +V++ ++Q Sbjct: 63 KTEIARRLAKLTNSPFIKVEASKFTEVGYVGRDVESIIRDLTEASVKMVKDELVKRYQDQ 122 Query: 126 ASINAEERILDALVGKTATSN---TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 A A ER+LD ++ + + N TR+ FRKKL +GE DKEI+I++ + +P Sbjct: 123 AQEAAVERVLDTIIPPSESPNYQDTRQKFRKKLLEGEFDDKEIEIDITMPPPRVEIMGMP 182 Query: 183 G---GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 G G L ++F + G+ R+KK + V+ + +E+ +L+D + V+ +++ Sbjct: 183 GQQPGMEDFTSGLKDMFGGLFGN-RQKKKKTKVRAALRLIQDEEAAKLVDTEEVNTKAVE 241 Query: 240 MVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 +VE GIVFLDE DKI + G VSREGVQRD+LP+VEGS+VSTKYG + TDHIL Sbjct: 242 LVEQSGIVFLDEIDKIASSQEVRKGGADVSREGVQRDILPIVEGSTVSTKYGMVRTDHIL 301 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIA+GAFH S+P+DL+PE+QGRFP+RV L SL K DF IL++ S L+ QY+ L+ TE Sbjct: 302 FIAAGAFHFSKPSDLIPELQGRFPIRVELDSLGKDDFVRILSEPRSALVKQYRHLLATEH 361 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 I LDF ++I+A+A+ +V N + +IGARRL TVME++LE++SF A ++ T+ ID Sbjct: 362 ITLDFQPEAIEAIAEYSVQANEKMENIGARRLHTVMEKLLEEVSFHAPEMDSMTIAIDRN 421 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV L + + D+ +IL Sbjct: 422 YVDLRLKKLVEDEDLSRYIL 441 >gi|256828892|ref|YP_003157620.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium baculatum DSM 4028] gi|256578068|gb|ACU89204.1| heat shock protein HslVU, ATPase subunit HslU [Desulfomicrobium baculatum DSM 4028] Length = 446 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/447 (49%), Positives = 313/447 (70%), Gaps = 18/447 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELD+YI+GQ AKR VAIALRNRWRR+QL +L +E+ PKNIL++GPTGVG Sbjct: 3 TLTPREIVSELDKYIVGQTQAKRMVAIALRNRWRRRQLDPELAEEIAPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAG+PFIKVE TKFTE+GYVGR+VE IIRDL+++ +N+VR+ VR + Sbjct: 63 KTEIARRLAKLAGSPFIKVEATKFTEVGYVGRDVESIIRDLMEIGVNLVRQEEEASVRIK 122 Query: 126 ASINAEERILDALVG---------------KTATSNTREVFRKKLRDGEISDKEIDIEVA 170 A ++AEER+LD L+ A +TRE R+ R G++ D+ +++EVA Sbjct: 123 AEVSAEERLLDLLLPTKPLESAGIDYIGPESQAEGSTREKLRQLWRAGKLDDRMVEVEVA 182 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 T + +PG + + + ++FSKV +KK +++V+ Y L++ E +RLIDM Sbjct: 183 -TGGGVQVMGVPGMEGME-MQMQDMFSKVFPK-KKKTKKVAVKSAYDILIQSECERLIDM 239 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 D VH + + V+ GIVFLDE DKI +S VSREGVQRDLLP+VEGS+V+TKYG Sbjct: 240 DKVHETARERVQESGIVFLDEIDKICGANSSGKADVSREGVQRDLLPIVEGSTVNTKYGM 299 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + +DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L +L K DF ILT+ ++ L +QYK Sbjct: 300 VRSDHILFIAAGAFHMSKPSDLVPELQGRFPLRVELSALTKEDFYRILTEPKNALTVQYK 359 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + + +T++++ +A A +N +IGARRL T+ME+++ D+SF A D+++ Sbjct: 360 ALLGTEKVEITYTDEALLEIARFAQKINEETENIGARRLYTIMEKIVSDLSFDAPDMEQA 419 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV ID +YV + D + D+ +IL Sbjct: 420 TVTIDKDYVAKALLDVQEDRDLTRYIL 446 >gi|296161395|ref|ZP_06844202.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. Ch1-1] gi|295888381|gb|EFG68192.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. Ch1-1] Length = 448 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/448 (47%), Positives = 313/448 (69%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122 Query: 126 ASINAEERILDAL------VGKTATSN----------TREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L VG A+S+ TR+ FRK+LR+G + DKE++++V Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSSAADTVDEGSTTRQTFRKRLREGLLDDKEVELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKALTDEEAAKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + + D+ ++L Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|167561103|ref|ZP_02354019.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis EO147] Length = 447 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/449 (48%), Positives = 314/449 (69%), Gaps = 21/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDK--EIDIEV 169 A+ AE+RILD L VG A + TR+ FRK+LR+G++ DK E+DIE Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGAGAEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQ 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 DI P G + +FS +G G+K + ++ +++ L +E+ ++++ Sbjct: 183 PTVGMDIM---APPGMEEMTEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLN 238 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKY Sbjct: 239 EEEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKY 298 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ Q Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQ 358 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SF+A + Sbjct: 359 YQALLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHA 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V IDA YV +G+ + D+ ++L Sbjct: 419 GQSVTIDAAYVDRALGEVSKDEDLSRYVL 447 >gi|312797560|ref|YP_004030482.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Burkholderia rhizoxinica HKI 454] gi|312169335|emb|CBW76338.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Burkholderia rhizoxinica HKI 454] Length = 448 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/447 (48%), Positives = 308/447 (68%), Gaps = 19/447 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 6 TMTPAEIVSELDKHIIGQGRAKRAVAVALRNRWRRQQVLDPLRQEITPKNILMIGPTGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+D+++ RES +VR + Sbjct: 66 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIDISVKQTRESEMRKVRTK 125 Query: 126 ASINAEERILDAL------VGKTATSN-------TREVFRKKLRDGEISDKEI--DIEVA 170 A AE+RILD L VG + TS TR+ RK+LR+G++ DKEI DIE Sbjct: 126 AQDLAEDRILDILLPQARPVGFSPTSEESERESATRQTLRKRLREGQLDDKEIELDIEAP 185 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 DI P G + +F+ +G G+K+ ++ +++ L +E+ ++++ Sbjct: 186 QVGMDIMG---PPGMEEMTEQIRSMFAN-LGGGKKQHRKVKIKEALKLLTDEEAGKMVNE 241 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + ++Q E GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 242 EDIKTRAVQNAEQNGIVFLDEIDKIASRQEAGGGEVSRQGVQRDLLPLVEGTTINTKYGM 301 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVGDFESILVRTDASLVKQYQ 361 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE+ISFSA + + Sbjct: 362 ALLATEDVHLEFADDGIKRLAEIAFSVNEKTENIGARRLYTVIEKLLEEISFSAGNHSGQ 421 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 +V IDA YV + D D+ ++L Sbjct: 422 SVKIDAAYVDSALNDVSQNEDLSRYVL 448 >gi|301118923|ref|XP_002907189.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora infestans T30-4] gi|262105701|gb|EEY63753.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora infestans T30-4] Length = 517 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/435 (50%), Positives = 301/435 (69%), Gaps = 7/435 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 PRE+V +L++YI+GQ DAKRAVAIALRNRWRRQ++ +LR E+ PKNIL++GPTG GK Sbjct: 86 LKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGK 145 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+ APF+KVE TKFTE+G+ GR+V+QIIRDLV+ AIN+V++ R++ +R+Q Sbjct: 146 TEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQV 205 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP--GG 184 E RILD L G +R F + LR GE+ D+ I+ +V S++ N I GG Sbjct: 206 QHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVP-VSTNPGNQPISFVGG 264 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 GI E+F + G + ++ RM++ + E + IDM V R++IQ E Sbjct: 265 EGKGI--SMEVFGRAFGEKKTERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEEN 322 Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKI + D S EGVQRDLLPL+EGS +STK+G++NTDHILF+ SGA Sbjct: 323 GIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGA 382 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH S+P+DLL E+QGR P+RV LK L + D ILT+ +NLI Q EL+KTEG+ L+FT Sbjct: 383 FHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIKTEGVTLNFT 442 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 +D++ +A VA +N T+ +IGARRL TV+E+V+EDISF +S+++ TV I AE+V Sbjct: 443 DDAVREIARVAAEINQTIENIGARRLHTVVEKVVEDISFDSSEMEAGSTVTITAEFVLER 502 Query: 423 IGDFPSETDMYHFIL 437 +G +TD+ FIL Sbjct: 503 VGKLMKKTDLSKFIL 517 >gi|308271351|emb|CBX27959.1| ATP-dependent hsl protease ATP-binding subunit hslU [uncultured Desulfobacterium sp.] Length = 457 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/457 (47%), Positives = 308/457 (67%), Gaps = 27/457 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N P EIV ELD+YIIGQ AK++VAIALRNRWRRQQ+P DLRDE+ PKNI+L+GPTGVG Sbjct: 3 NLKPSEIVKELDKYIIGQNKAKKSVAIALRNRWRRQQVPDDLRDEIAPKNIILIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL++L +PF KVE +KFTE+GYVGR+VE ++RDL+++ +N V+ +++V+E+ Sbjct: 63 KTEIARRLSKLTDSPFNKVEASKFTEVGYVGRDVESMVRDLLELTVNAVKSKEQEDVKEK 122 Query: 126 ASINAEERILDALVGKTA------------------------TSNTREVFRKKLRDGEIS 161 A I AEER+LD L+ KT S TR R LR G++ Sbjct: 123 AMIIAEERMLDILLPKTNRQEVDNKNESGETGLEPVNAESTDLSATRNKLRDMLRKGKLD 182 Query: 162 DKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 D+ ID++V++ I F G +G+ N ++ +M KK+ ++ V + L Sbjct: 183 DRIIDLDVSERQMPVIEVFSNLGMEEMGV-NFKDMLGGLMPKNTKKR-KVKVSEAMEILT 240 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 DES RL+DMD V + +I VE GI+F+DE DKIV ++ G+G VSREGVQRDLLP+VE Sbjct: 241 LDESQRLVDMDKVVKSAILKVEQSGIIFIDEIDKIVGKNGGSGPDVSREGVQRDLLPIVE 300 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+++TKYG + TDHILFIASGAFH +P+DL+PE+QGRFP+RV L++L + +F IL + Sbjct: 301 GSTITTKYGPVKTDHILFIASGAFHAVKPSDLIPELQGRFPIRVELEALGQKEFVRILKE 360 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ L++QY ++KTEG+ + F ++I+ +A +A +N+ +IGARRL T+ME +LEDI Sbjct: 361 PKNALLIQYIAMLKTEGVNIVFEPEAIEEIARIAEEVNNHTENIGARRLHTIMECLLEDI 420 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A D+ K VVIDA V + D D+ +IL Sbjct: 421 LFDAPDMPGKDVVIDANSVSSKLNDIKDNEDLSRYIL 457 >gi|219669729|ref|YP_002460164.1| ATP-dependent protease ATP-binding subunit HslU [Desulfitobacterium hafniense DCB-2] gi|254802303|sp|B8FRG8|HSLU_DESHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|219539989|gb|ACL21728.1| heat shock protein HslVU, ATPase subunit HslU [Desulfitobacterium hafniense DCB-2] Length = 458 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/459 (47%), Positives = 319/459 (69%), Gaps = 30/459 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PRE V ELDRYI+GQ AKRAVAIALRNR+RR LP +++E++PKNIL++GPTGVG Sbjct: 3 QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+ + +EV Q Sbjct: 63 KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122 Query: 126 ASINAEERILDALV-GKTATSNT-------------------------REVFRKKLRDGE 159 A+ AE+R+ LV GK +N+ R R++L GE Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + ++ I++EV D + +F + G + NL ++ + ++ R K+ +++V++ L Sbjct: 183 LDEQVIEVEVEDNQPLLPDF-LGTGMEINT-NLQDMMAGMLPKKRHKR-KVTVREARRIL 239 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ +LID D +++I+ VE G+VFLDE DKI RD +G VSR GVQRD+LP+V Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+ DF+ ILT Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + +S+LI QY L++TEGI ++FTE++ID LA VA +NS +IGARRL T++ERVLE+ Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419 Query: 400 ISFSASDLQEK-TVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS+L E TV I+ EY++ +G+ D+ +IL Sbjct: 420 LSFEASELPEDYTVTINREYIQHRLGNIVRNQDLSRYIL 458 >gi|172057893|ref|YP_001814353.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium sibiricum 255-15] gi|229486076|sp|B1YIA9|HSLU_EXIS2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|171990414|gb|ACB61336.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium sibiricum 255-15] Length = 456 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/458 (46%), Positives = 313/458 (68%), Gaps = 32/458 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PR+IV +L+ ++IGQ DAKRAVAIALRNR+RRQ L LRDE+ PKNIL++GPTGVGK Sbjct: 4 FTPRQIVEKLNEHVIGQADAKRAVAIALRNRYRRQLLDPSLRDEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V++ +++ ++E+A Sbjct: 64 TEIARRLAKLVRAPFVKIEATKFTEVGYVGRDVESMVRDLVEASLRLVKDEKKEALKERA 123 Query: 127 SINAEERILDALVGKTATSNT---------------------------REVFRKKLRDGE 159 A ERI+DALVGK A++ R V R++L G+ Sbjct: 124 EAVANERIVDALVGKKASTGLGGGNPFEMLFGGTQKPPEQETANDTADRSVIRQQLFQGQ 183 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + D+ ID+++ + D+ F G G+ NL ++ +VM KK+ ++SV++ P L Sbjct: 184 LEDRMIDVDIEERQMDL--FSGQQGME-GLANLQDMLGQVMPKKTKKR-QLSVKEARPIL 239 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E++RL+D++ VH ++++ E GI+F+DE DKI + + GVSREGVQRD+LP+V Sbjct: 240 TAEEAERLLDLNEVHDEAVRRAEQMGIIFVDEIDKIATKGQ-DSAGVSREGVQRDILPIV 298 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF ILT Sbjct: 299 EGSTVVTKYGPVKTDHMLFIAAGAFHMAKPSDLIPELQGRFPIRVELDSLTEDDFVKILT 358 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + L+ QYK L+ E + + FTED+I +A +A +N +IGARRL T+MERVLE+ Sbjct: 359 EPNQALLKQYKALLGAEQVHVTFTEDAIRQIARIAAQVNDETDNIGARRLYTIMERVLEE 418 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF A+++ E V I +YV +G + D+ FIL Sbjct: 419 LSFEAAEMPETDVTITPQYVMDRVGKVADDRDLSQFIL 456 >gi|295698589|ref|YP_003603244.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia pediculicola USDA] gi|291157288|gb|ADD79733.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Riesia pediculicola USDA] Length = 445 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/445 (49%), Positives = 304/445 (68%), Gaps = 17/445 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD YIIGQ+ AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDNYIIGQEKAKRSVAIALRNRWRRMQLNESLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ ++ ++ + +A Sbjct: 64 TEIARRLAKLAKAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMIHLQSIEKNKNRA 123 Query: 127 SINAEERILDAL---VGKTATSN-----------TREVFRKKLRDGEISDKEIDIEVADT 172 AEE+ILD L + K +S TR+ R+KLR+GE+ DKEI+IEV+ + Sbjct: 124 EEVAEEKILDILSTHIIKNKSSWGDQKENDLKNFTRQSLRRKLRNGELDDKEIEIEVSAS 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 I PG + L +F + G +K K Q ++++E+ RL++ + Sbjct: 184 PMGIEIMAPPGMEEM-TSQLQSMFQNLAGQKQKSKKMKVKQAF--RVLKEEAARLVNPEE 240 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + + +I VE GIVF+DE DKI + VSREGVQRDLLPLVEG +VSTK+G + Sbjct: 241 LKQKAIDTVEQNGIVFIDEIDKICRKGHSTNSDVSREGVQRDLLPLVEGCTVSTKHGMVK 300 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAF VS P+DL+PE+QGR P+RV L++L +DF+ ILT+ ++L +QYKEL Sbjct: 301 TDHILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTANDFKRILTEPNASLTMQYKEL 360 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 M TEG+ ++FT+D I +A+VA +N +IG+RRL T++ER++ED+SFSA + +T+ Sbjct: 361 MLTEGLNIEFTQDGISKIAEVAWKVNEKTENIGSRRLHTILERLMEDLSFSADERSGETI 420 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 +ID+ YV H+ + S D+ FIL Sbjct: 421 IIDSNYVSSHLDELVSNEDLSRFIL 445 >gi|320528983|ref|ZP_08030075.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis F0399] gi|320138613|gb|EFW30503.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas artemidis F0399] Length = 464 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/457 (48%), Positives = 309/457 (67%), Gaps = 29/457 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL D+R++++PKNIL++G TGVGKT Sbjct: 10 TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR + +EV+E+A+ Sbjct: 70 EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129 Query: 128 INAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEISD 162 NAEER++D V S R+ RK+L GE+ D Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEEPAEEKQEPPKYQAGRDWVRKRLHAGELED 189 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 + I+I+V ++S ++ G + G+ NL + ++ R+++ Q Sbjct: 190 EMIEIDVEESSRPMAGM-FAGSSLEGVGDNLQSMIGSLVPKRRRRRKVSVRQ-ARKLFTA 247 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280 +E+D+L+DMD V +++ E GIVFLDE DKI V +G VSREGVQRD+LP+VE Sbjct: 248 EEADKLVDMDVVADEAVHAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVE 307 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF ILT+ Sbjct: 308 GSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTE 367 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ LI QY L+ EG+ L F +D++ LA++A +N DIGARRL T++E++LED+ Sbjct: 368 PKNALIKQYAALLGAEGVTLTFGDDAVGRLAELAETVNEQTEDIGARRLYTLLEKLLEDL 427 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A DL EK +VID YV ++ D + DM FIL Sbjct: 428 SFDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464 >gi|325295312|ref|YP_004281826.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065760|gb|ADY73767.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfurobacterium thermolithotrophum DSM 11699] Length = 477 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/461 (47%), Positives = 314/461 (68%), Gaps = 35/461 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+P+EIV ELD+YI+GQ +AK+AVAIALRNRWRRQ+LP ++RDE+ PKNI+++GPTGVGK Sbjct: 22 FTPKEIVKELDKYIVGQHEAKKAVAIALRNRWRRQRLPEEMRDEVAPKNIIMIGPTGVGK 81 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APFIKVE TKFTE+GYVGR+VE IIRDLV++A+ +V+E + + V E+A Sbjct: 82 TEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVTMVKEEKMETVMERA 141 Query: 127 SINAEERILDALVGKTATS-----NTREVF-------------------------RKKLR 156 A +R+ + +V + TS N +VF +K L+ Sbjct: 142 RELAYDRLAEIMVPEPQTSQQSIQNLFDVFFSPQKNLNQDLEKEQSRLKDERNRIKKLLK 201 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ ++ ++I V + I+ I G + NL ++ S ++ +K + + Sbjct: 202 EGKLDEEVVEIAVTVETPGINVIGIGGDMA----NLQDMLSSILPKPKKMRKMKVKE-AL 256 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 L ++E+ +LIDMD V R++I VEN GIVF+DE DK+ A+ G G VSREGVQRDLL Sbjct: 257 RYLTQEEAQKLIDMDEVVREAIDRVENQGIVFIDEIDKVAAKSGGKGPDVSREGVQRDLL 316 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS VSTKYG + TDHILFIA+GAFH+++P+DLLPE+QGRFP+RV LK L K DF Sbjct: 317 PIVEGSKVSTKYGLVRTDHILFIAAGAFHIAKPSDLLPELQGRFPIRVELKPLTKEDFVR 376 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ ++ L QYK L+ TEG+ ++FT D I+ +A +A N+ +IGARRL TV+E++ Sbjct: 377 ILTEPKNALTKQYKALLGTEGVEIEFTPDGIEEIARIAEEANTKAENIGARRLHTVLEKL 436 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LE+ISF+A ++ + ++ID EYVR + + D+ +IL Sbjct: 437 LEEISFNAPSMKGEKILIDREYVRNKLENIIESEDLTKYIL 477 >gi|167630283|ref|YP_001680782.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium modesticaldum Ice1] gi|167593023|gb|ABZ84771.1| heat shock protein hslvu, ATPase subunit hslu [Heliobacterium modesticaldum Ice1] Length = 464 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/461 (48%), Positives = 317/461 (68%), Gaps = 30/461 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV ELDR+I+GQQ AK+AVAIALRNR+RRQ LP +LRDE+ PKNIL++GPTGVG Sbjct: 5 NLTPKQIVEELDRHIVGQQAAKKAVAIALRNRYRRQLLPENLRDEVTPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ R +EV+ + Sbjct: 65 KTEIARRLARLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAERMEEVKTR 124 Query: 126 ASINAEERILDALV-------------------GKTATSNT----------REVFRKKLR 156 A AEER+++ LV G+T + R + R+KL+ Sbjct: 125 ADREAEERLVELLVPQPKAPKNMANPLEMLFGGGQTNQPSPSSDDPGLREKRAIIRQKLK 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 E+ D I+IEV D + + + + G N+ + +++ GRKK+ R++V++ Sbjct: 185 RLELEDDWIEIEVDDNAMPLGDIFVGSGLDEMGANIQNMLGQILPRGRKKR-RVTVREAR 243 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 L E+ +LIDMD V R++++ E GI+FLDE DKI +R+ G G VSR GVQRD+L Sbjct: 244 RILAIQEAQKLIDMDAVTREALERAEQSGIIFLDEIDKIASREGGQGPDVSRGGVQRDIL 303 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L++ DF+ Sbjct: 304 PIVEGSTVMTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPLRVELEALSRQDFQR 363 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ E +L+ QY L+ TE + L F E++++A+A +A +N+ +IGARRL T++E+V Sbjct: 364 ILTEPEGSLLKQYVALLSTEAVELVFKEEALEAIAAIAYRVNTQTENIGARRLHTILEKV 423 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+SF A DL +K VVID EYV + D+ +IL Sbjct: 424 LEDVSFDAPDLLDKKVVIDKEYVESRLEGILQREDLSRYIL 464 >gi|167568322|ref|ZP_02361196.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis C6786] Length = 444 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/448 (48%), Positives = 313/448 (69%), Gaps = 21/448 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQDKAKRAVAVALRNRWRRQQVADPLRTEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDK--EIDIEVA 170 + AE+RILD L VG A S TR+ FRK+LR+G++ DK E+DIE Sbjct: 121 TDQAEDRILDILLPQPRAVGFGAGSEHANDDNNATRQTFRKRLREGQLDDKDVELDIEQP 180 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 DI P G + +FS +G G+K + ++ +++ L +E+ ++++ Sbjct: 181 TVGMDIM---APPGMEEMTEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAAKMLNE 236 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 237 EEVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYG 296 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY Sbjct: 297 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILVATDASLVKQY 356 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SF+A + Sbjct: 357 QALLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAG 416 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + V IDA YV +G+ + D+ ++L Sbjct: 417 QRVTIDAAYVDRALGEVSRDEDLSRYVL 444 >gi|220931601|ref|YP_002508509.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix orenii H 168] gi|219992911|gb|ACL69514.1| heat shock protein HslVU, ATPase subunit HslU [Halothermothrix orenii H 168] Length = 462 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/462 (47%), Positives = 323/462 (69%), Gaps = 35/462 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV +LD+YI+GQ++AK+AVAIALRNR+RR+++ +DL++E++PKNIL++GPTGVGK Sbjct: 5 LTPRQIVKKLDKYIVGQEEAKKAVAIALRNRYRRKKIISDLQEEVIPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLAR+A APFIKVEVTKFTE+GYVGR+VE ++RDLV+ AI +V+ + +V +A Sbjct: 65 TEIARRLARIASAPFIKVEVTKFTEVGYVGRDVESMVRDLVETAIRMVKSEKMKDVEHKA 124 Query: 127 SINAEERILD---ALVGKTATSNTREVFRKK-------------------------LRDG 158 A +RI+D L GK + +F + + +G Sbjct: 125 RDLAIDRIVDIILPLPGKKRRNPFEVLFSDREENLDDVDSDNYTSLKERRKRLRKRIVNG 184 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRMSVQKC 215 ++ D+ I+I V S + F++ GA V GI N ++F + + +KK+ ++SV++ Sbjct: 185 QLDDQVIEITV--ESQNPQMFEVFSGAGVEEMGI-NFQDMFGNIFPAQKKKR-KVSVKEA 240 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L ++E+ +LIDMD V ++I+ VEN GI+FLDE DKI R+SG G VSREGVQRD+ Sbjct: 241 KEILKQEEAQKLIDMDEVSLEAIKKVENDGIIFLDEIDKIAGRESGKGPEVSREGVQRDI 300 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG++ TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL++ F+ Sbjct: 301 LPIVEGSTVMTKYGAVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLSREHFK 360 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL ++ L QY+ L++TEGI + FT+++I+ +AD A +N +IGARRL T+ME+ Sbjct: 361 QILLQPKNALTKQYEALIETEGIKIKFTDEAIEEIADFAYRVNEQTENIGARRLHTIMEK 420 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+SF+A D+ + V ID +YVR + D + D+ +IL Sbjct: 421 LLEDVSFNAPDMDVEEVTIDVDYVRNQLADVVQDKDLSKYIL 462 >gi|187922349|ref|YP_001893991.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia phytofirmans PsJN] gi|238689476|sp|B2T1N8|HSLU_BURPP RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|187713543|gb|ACD14767.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia phytofirmans PsJN] Length = 448 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEDPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122 Query: 126 ASINAEERILDAL------VGKTATSN----------TREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L VG A+S+ TR+ FRK+LR+G + DKEI+++V Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSSAADTVDESSTTRQTFRKRLREGLLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + ++ V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKLKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SF+A + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + + D+ ++L Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|170693982|ref|ZP_02885138.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia graminis C4D1M] gi|170141054|gb|EDT09226.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia graminis C4D1M] Length = 448 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/448 (47%), Positives = 314/448 (70%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDDPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRTK 122 Query: 126 ASINAEERILDAL------VGKTATSNT----------REVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L VG ++S+T R+ FRK+LR+G + DKEI+++V Sbjct: 123 AEDQAEDRILDILLPSARPVGFGSSSSTIDTADEGGTTRQTFRKRLREGLLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SF+A + Sbjct: 361 QALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +TV IDA YV + + + D+ ++L Sbjct: 421 RTVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|147677585|ref|YP_001211800.1| ATP-dependent protease ATP-binding subunit HslU [Pelotomaculum thermopropionicum SI] gi|189043913|sp|A5D2W8|HSLU_PELTS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|146273682|dbj|BAF59431.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pelotomaculum thermopropionicum SI] Length = 465 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/465 (47%), Positives = 311/465 (66%), Gaps = 35/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR IV ELD+YI+GQ++AK+AVAIALRNR+RR++LP D +DE+MPKNIL++GPTGVG Sbjct: 3 ELTPRRIVEELDKYIVGQKNAKKAVAIALRNRYRRKKLPEDFKDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ + V ++ Sbjct: 63 KTEIARRLARLVKAPFVKVEATKFTEVGYVGRDVEGMVRDLVETSIRMVKQEKMAMVEDR 122 Query: 126 ASINAEERILDAL----VGKTATSNT----------------------------REVFRK 153 A AEE+I++ L V +TA N RE+ R+ Sbjct: 123 AQKMAEEKIIELLAPYPVQQTAARNPLELLFGAARQAEQTDKNQEQRIKRIDFEREMLRE 182 Query: 154 KLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 KL GE+ ++ ++IEV D+ + F GG +NL ++ + +K K R++V Sbjct: 183 KLARGELENEYLEIEVEDSKPPMLEIFTASGGMEEMGVNLQDMLGGLFPK-KKHKRRVTV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L + E+ +LIDMD V +I+ E GI+FLDE DKI R+ G G VSR GVQ Sbjct: 242 REARKILTQQEAQKLIDMDEVTAAAIKRAEEDGIIFLDEIDKIAGRE-GYGPDVSRGGVQ 300 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELESLTCE 360 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF+ ILT+ + LI QY EL+ TEG+ + FTE+S+ +A +A +N +IGARRL T+ Sbjct: 361 DFQQILTEPRNALIKQYTELLATEGVKVKFTENSLVEIAKIAYTVNEQTENIGARRLHTI 420 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LEDISF A +L K +VID E V +G+ D+ +IL Sbjct: 421 LEKLLEDISFEAPELTGKEIVIDREIVLEKLGELAKNKDLSRYIL 465 >gi|116747516|ref|YP_844203.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophobacter fumaroxidans MPOB] gi|116696580|gb|ABK15768.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophobacter fumaroxidans MPOB] Length = 466 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/463 (47%), Positives = 311/463 (67%), Gaps = 33/463 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIV ELD+YIIGQ+DAKR VAIALRNRWRRQQ+P LRDE+ PKNI+++GPTGVGK Sbjct: 5 LTPAEIVQELDKYIIGQRDAKRMVAIALRNRWRRQQVPEHLRDEIAPKNIIMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA +PF+K+E +KFTE+GYVGR+VE +IRDL ++A+++VR + V+ +A Sbjct: 65 TEIARRLARLAQSPFLKIEASKFTEVGYVGRDVESMIRDLSELAVSMVRTEEMEAVKIKA 124 Query: 127 SINAEERILDALVGK-------------------------------TATSNTREVFRKKL 155 AEE++LD L+ +TRE RK L Sbjct: 125 EELAEEKLLDILLPPKRQQESREQELPVPVEPQEAREPREAAREEAVQADSTREKLRKLL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R G + D+ ++++V D + + G NL ++ ++ R K+ ++ + + Sbjct: 185 RKGALDDRYVELDVPDRNFPMVEIFAGTGMEDMDYNLRDMLGSMLPR-RTKRRKVKIPEA 243 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRD 274 L+++ES RLIDMD V + +I+ VE+ GI+FLDE DKI R+SG G VSREGVQRD Sbjct: 244 REILVQEESQRLIDMDKVIKSAIERVEHSGIIFLDEIDKIAGRESGGRGPDVSREGVQRD 303 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 LLP+VEGS+V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL K DF Sbjct: 304 LLPIVEGSTVTTKYGMVKTDHILFIASGAFHISKPSDLIPELQGRFPIRVELASLTKEDF 363 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL + E+ LI+QYK L+ TE + L F +++I+ +A +A +N+ +IGARRL T+ME Sbjct: 364 VRILKEPENALIVQYKSLLATEEVELTFDDEAIEEIAGLAFQVNARTENIGARRLHTIME 423 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++L DISF+A DL+ + + I +Y++ + D + D+ +IL Sbjct: 424 KLLSDISFNAPDLKGQKIPITRQYIQETLSDIIKDEDLSRYIL 466 >gi|296133054|ref|YP_003640301.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola sp. JR] gi|296031632|gb|ADG82400.1| heat shock protein HslVU, ATPase subunit HslU [Thermincola potens JR] Length = 467 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/467 (46%), Positives = 318/467 (68%), Gaps = 37/467 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IV ELD++I+GQ AKR+VA+ALRNR+RR++LP +LRDE++PKNI+++GPTGVG Sbjct: 3 DLTPKQIVEELDKFIVGQHKAKRSVAVALRNRYRRKKLPPELRDEVVPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ +I +V++ + EV E+ Sbjct: 63 KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKQEKMAEVEEK 122 Query: 126 ASINAEERILD-----------------ALVGK-----------------TATSNTREVF 151 A + AE+RILD AL G R++ Sbjct: 123 ARVMAEKRILDILAPLPEREMGLKNPFEALFGGGQRNDDQAQEQAFTERVNQVQRERDIL 182 Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 +KL+ GE+ + I+IEV DT+ + F G +GI N+ ++ ++ RKKK + Sbjct: 183 WEKLQKGELEHEYIEIEVEDTNVPTVEVFSGAGVEEMGI-NIQDILGGIL-PKRKKKRKT 240 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +V++ L E+ +LIDMD V +I+ E GI+FLDE DKI ARD G G VSR G Sbjct: 241 TVEEARKILTNQEAQKLIDMDEVISQAIERAEQSGIIFLDEIDKIAARDGGAGPDVSRGG 300 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL Sbjct: 301 VQRDILPIVEGSTVMTKYGAVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLT 360 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ IL ++ +I QYK L++TEGI+L FTE+S+D +A +A +N +IGARRL Sbjct: 361 EEDFKQILIAPQNAIIKQYKALLETEGIMLKFTENSLDEIAKIAYTVNEQTENIGARRLH 420 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI++ A D +K VVID +YV+ + + D+ +IL Sbjct: 421 TILEKLLEDIAYEAPDTDQKVVVIDEKYVQEKLSEVIHNRDLSRYIL 467 >gi|149925902|ref|ZP_01914165.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] gi|149825190|gb|EDM84401.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] Length = 443 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/444 (50%), Positives = 303/444 (68%), Gaps = 15/444 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P IV EL++ I+GQ AKRAVA+ALRNRWRR Q+P LR E+ PKNIL++GPTGVG Sbjct: 3 QLTPSNIVEELNKNIVGQDAAKRAVAVALRNRWRRMQVPMPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL+++A+ VRE + V E+ Sbjct: 63 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLIEIALKQVREEAQLGVVEE 122 Query: 126 ASINAEERILDALV------GKTATS------NTREVFRKKLRDGEISDKEIDIEVADTS 173 A A +R+LDAL+ G T + TR FR+KL GE+ DKEI+IEVA S Sbjct: 123 AKSAAFDRVLDALLPPARDFGFTEKAPEPDENRTRIRFREKLFAGELDDKEIEIEVAAAS 182 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L +F + G G+KK +M V + + +E+ + ++ + V Sbjct: 183 PSLDVVGPPGMEEL-TGQLQSMFQNISG-GKKKLRKMKVAEALKAIQDEEAAKRVNEEEV 240 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I VE GIVFLDE DKI + G G VSR+GVQRDLLPLVEG++V+TKYG I T Sbjct: 241 RAKAIARVEQDGIVFLDEIDKIATKADGRGTDVSRQGVQRDLLPLVEGTTVNTKYGMIKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILF+ASGAFH+SRP+DL+PE+QGRFP+RV L+SL DF+ ILT T++ L QYK L+ Sbjct: 301 DHILFVASGAFHLSRPSDLIPELQGRFPIRVELESLTVDDFKRILTSTDACLTEQYKALL 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 T+G+ L+FT++ + LA++A +N +IGARRL TVMER+LE+++F A D Q + V Sbjct: 361 ATDGVELEFTDEGVRRLAEIAFTVNEKTENIGARRLYTVMERLLEEVAFEA-DGQPRPVK 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I AE+V +G+ D+ FIL Sbjct: 420 ITAEFVDSRLGEAAKSEDLAQFIL 443 >gi|291286265|ref|YP_003503081.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio acetiphilus DSM 12809] gi|290883425|gb|ADD67125.1| heat shock protein HslVU, ATPase subunit HslU [Denitrovibrio acetiphilus DSM 12809] Length = 439 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 212/438 (48%), Positives = 317/438 (72%), Gaps = 9/438 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 ++P++IV ELD+Y++GQ++AK+AVA+A+RNR+RR QLP L+DE+ PKNI+L+GPTGVGK Sbjct: 4 YTPKKIVDELDKYVVGQKNAKKAVAVAMRNRYRRLQLPKSLQDEISPKNIILIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T ++RRLA+L+ +PFIKVE +K+TE+GYVGR+VE ++RDLV++++++VRE ++ V ++A Sbjct: 64 TEVARRLAKLSRSPFIKVEASKYTEVGYVGRDVESMVRDLVEISVSLVREEKKASVIDKA 123 Query: 127 SINAEERILDALVGKTAT-----SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 IN +ER+LD L+ T S TRE R KL GE+ ++ +++EV D+ + F Sbjct: 124 KINTKERLLDLLLPPTTGYAEQDSGTREKLRVKLEAGELDERTVEVEVDDSPPQVEVFTN 183 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G +G LS++ K M +K+K +M + + P L + E++RLIDMD V + + V Sbjct: 184 MGIEDMG-SGLSDMM-KNMFPSKKRKRKMKISEAKPILEQQETNRLIDMDDVKDIATERV 241 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GI+FLDE DKI +S G VSREGVQRDLLP+VEGS+V+TKYG + TDHILFI Sbjct: 242 EQSGIIFLDEIDKICVSNSSGTKGGDVSREGVQRDLLPIVEGSTVNTKYGMVRTDHILFI 301 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 A+GAFH+++P DL+PE+QGRFP+RV L+SL +F IL + E++L QY L+ +G+ Sbjct: 302 AAGAFHIAKPTDLIPELQGRFPIRVELESLTAEEFVRILKEPENSLTRQYTALLGADGVE 361 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L FT+D I +A++A LN T+ +IGARRL T++E++LE++S+ A +++ K VV+DA YV Sbjct: 362 LSFTDDGICRIAEMADELNKTLENIGARRLHTIVEKLLEEVSYEAPEVESKGVVVDAAYV 421 Query: 420 RLHIGDFPSETDMYHFIL 437 H+ D + D+ ++L Sbjct: 422 DEHLKDIVEDRDLSRYVL 439 >gi|288942671|ref|YP_003444911.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium vinosum DSM 180] gi|288898043|gb|ADC63879.1| heat shock protein HslVU, ATPase subunit HslU [Allochromatium vinosum DSM 180] Length = 442 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/441 (49%), Positives = 308/441 (69%), Gaps = 12/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ IV+ELD++I+GQ DAKRAVAIALRNRWRR Q+ +R E+ PKNIL++GPTGVGK Sbjct: 4 ITPQRIVAELDKHIVGQSDAKRAVAIALRNRWRRAQIEEPMRSEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR V+ IIRDL D+ + + RE ++ + A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGREVDSIIRDLADIGVKMAREQEMAKLADLA 123 Query: 127 SINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILD L+ T +S TRE R KLR G++ D+EI+I+V+ + Sbjct: 124 EAAAEERILDVLLPPPSDFEEDSRSTVSSATREKLRTKLRSGDMDDREIEIQVSAAPLGV 183 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 PG + L LF +G R K+ ++ ++ L +E+ + ++ + + Sbjct: 184 EIMAPPGMEEMSN-QLQGLFQN-LGQSRTKRRKLRIRDARKLLKDEEAAKRVNDEEMKLR 241 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +++ VE GIVF+DE DK+ R+ +G+ VSREGVQRDLLPLVEGS+VSTK+G++ TDHI Sbjct: 242 ALENVEQNGIVFIDEIDKVAKREGTSGVDVSREGVQRDLLPLVEGSTVSTKHGAVRTDHI 301 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF ILT+ +++L QYK L+ TE Sbjct: 302 LFIASGAFHLSKPSDLIPELQGRLPIRVELKALSTDDFVRILTEPDASLTDQYKALLATE 361 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L+FTED I +A++A +N +IGARRL TV+ER+LED+S++A++L TV I+A Sbjct: 362 GVNLEFTEDGIRRIAEIAWQVNEKTENIGARRLHTVLERLLEDVSYNATELDRVTVTINA 421 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV ++ D ++ D+ +IL Sbjct: 422 AYVDQNMADLAADEDLSRYIL 442 >gi|209521635|ref|ZP_03270330.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. H160] gi|209497937|gb|EDZ98097.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia sp. H160] Length = 448 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/448 (47%), Positives = 312/448 (69%), Gaps = 18/448 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122 Query: 126 ASINAEERILDALV--------GKTAT--------SNTREVFRKKLRDGEISDKEIDIEV 169 A AE+RILD L+ G +++ S TR+ FRK+LR+G++ DKEI+++V Sbjct: 123 AGDLAEDRILDILLPTARPVGFGSSSSLADTADEGSTTRQTFRKRLREGQLDDKEIELDV 182 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + PG + + +F+ + G G+K + +M V++ L +E+ ++++ Sbjct: 183 EQPQVGMDIMGPPGMEDM-TEQIRSMFANI-GGGKKTRRKMKVKEALKVLTDEEAGKMLN 240 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRNEAGGGEVSRQGVQRDLLPLVEGTTINTKYG 300 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY Sbjct: 301 MVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQY 360 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L+F D I LA++A +N +IGARRL TV+E++LE++SFSA + Sbjct: 361 QALLATEDVHLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHSG 420 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + V IDA YV + + + D+ ++L Sbjct: 421 RAVQIDAAYVDRALNEVAEDEDLSRYVL 448 >gi|157363639|ref|YP_001470406.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga lettingae TMO] gi|167017230|sp|A8F5A8|HSLU_THELT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157314243|gb|ABV33342.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga lettingae TMO] Length = 462 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/458 (47%), Positives = 319/458 (69%), Gaps = 27/458 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+EIV ELD+YIIGQ AK+AVAIA+RNR RRQ+LP + E++PKNIL++GPTGVG Sbjct: 6 NLTPKEIVRELDKYIIGQYQAKKAVAIAIRNRIRRQKLPDIWQKEVLPKNILMIGPTGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ ++RDLV++++N+V++ R ++V+++ Sbjct: 66 KTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMVRDLVEISVNMVKKERMEQVKDK 125 Query: 126 ASINAEERILDALVGKT--------------------------ATSNTREVFRKKLRDGE 159 A EERILDAL+ ++ + RE R+KLR+GE Sbjct: 126 AEQMVEERILDALIPESRKPQNISFMGLFTASQQQQPSPEERRSLRQKREEIRQKLRNGE 185 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + ++ I+IE+ S G ++L + +M R+KK RM+V + L Sbjct: 186 LENEMIEIEIEKEISPFIGALGQGELEDLGIDLGSMLGSLMPKTRQKK-RMTVSEARRTL 244 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 + ES++LIDMD +++++ +N GI+F+DE DKI + SG+G VSR+GVQRDLLP+V Sbjct: 245 LPIESEKLIDMDKATQEALERAQNRGIIFIDELDKIAVKSSGSGPDVSRQGVQRDLLPIV 304 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG+++ TKYG + TD+ILFI SGAFH+SRP+DL+PE+QGRFP+RV L SL + DF IL Sbjct: 305 EGTTIMTKYGPVRTDYILFIGSGAFHMSRPSDLIPELQGRFPIRVELSSLTRKDFVRILV 364 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + E+ + QY+ L+ TEGI L FTED I+ +A +A LN + +IGARRL TV+E+VLE+ Sbjct: 365 EPENAITKQYQALLSTEGIELIFTEDGIEEMAKIAYELNQRLENIGARRLYTVVEKVLEE 424 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ISF A D+QEK ++IDA+YV + + S+ D+ +IL Sbjct: 425 ISFEAPDVQEKKIIIDAKYVMGKLENIISDEDVSSYIL 462 >gi|313895584|ref|ZP_07829140.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312975710|gb|EFR41169.1| ATP-dependent protease HslVU, ATPase subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 464 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/457 (48%), Positives = 309/457 (67%), Gaps = 29/457 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV+ELD+YI+GQQ+AKRAVAIALRNRWR +QL D+R++++PKNIL++G TGVGKT Sbjct: 10 TPREIVTELDKYIVGQQEAKRAVAIALRNRWRSRQLDTDMREDIIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APF+KVE TKFTE+GYVGR+VE I+RDLV+ A+ +VR + +EV+E+A+ Sbjct: 70 EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETAVRMVRREKLEEVKEKAA 129 Query: 128 INAEERILDALVGKTATS-------------------------NTREVFRKKLRDGEISD 162 NAEER++D V S R+ RK+L GE+ D Sbjct: 130 ENAEERLIDVFVPAPKKSVNPLGKLFGAEEKPAEEKQEPPKYQAGRDWVRKRLHAGELED 189 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 + I+I+V ++S ++ G + G+ NL + ++ R+++ Q Sbjct: 190 EMIEIDVEESSRPMAGM-FAGSSLEGVGDNLQSMIGSLVPKRRRRRKVSVRQ-ARKLFTA 247 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVE 280 +E+D+L+DMD V +++ E GIVFLDE DKI V +G VSREGVQRD+LP+VE Sbjct: 248 EEADKLVDMDVVADEAVYAAEYSGIVFLDEIDKIAVGNGHSSGADVSREGVQRDILPIVE 307 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LKSL K DF ILT+ Sbjct: 308 GSTVVTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELKSLVKEDFERILTE 367 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ LI QY L+ EG+ L F +D+I LA++A +N DIGARRL T++E++LE++ Sbjct: 368 PKNALIKQYAALLGAEGVTLTFGDDAIGRLAELAETVNEQTEDIGARRLYTLLEKLLENL 427 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A DL EK +VID YV ++ D + DM FIL Sbjct: 428 SFDAPDLTEKDIVIDTAYVDRYLADIARDHDMSRFIL 464 >gi|119943797|ref|YP_941477.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii 37] gi|166221598|sp|A1SQW3|HSLU_PSYIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|119862401|gb|ABM01878.1| heat shock protein HslVU, ATPase subunit HslU [Psychromonas ingrahamii 37] Length = 444 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/443 (49%), Positives = 304/443 (68%), Gaps = 12/443 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+EI ELDR+IIGQ +AKRAVAIALRNRWRR QL ++R E+ PKNIL++GPTGVG Sbjct: 3 NMTPKEIKHELDRHIIGQDNAKRAVAIALRNRWRRMQLDKEMRQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE I+RDLVDVAI + RE +V + Sbjct: 63 KTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIVRDLVDVAIKLTREEEMAKVAHK 122 Query: 126 ASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 A AE+RILD L+ KT S TR+ FRKKLR+G++ DKE++I++ Sbjct: 123 AEDLAEDRILDILIPPAKTGNDWETVKTEDSATRQSFRKKLREGKLDDKEVEIDLPAPQI 182 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +F + G + KK +M +++ L+ E+ +L++ + + Sbjct: 183 GVEIMAPPGMEEM-TNQLQGMFQSMSGKDKTKKRKMKIKEALKVLIESEAAKLVNEEDIK 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 ++ EN GI+F+DE DKI R G VSREGVQRDLLPL+EGS+VSTK+G + TD Sbjct: 242 EKALFSAENNGIIFIDEIDKICKRGDSAGPDVSREGVQRDLLPLIEGSTVSTKHGMVKTD 301 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 H+LFIASGAF V++P+DL+PE+QGR P+RV L++L + D ILT+ +++L QYK L+ Sbjct: 302 HMLFIASGAFQVAKPSDLIPELQGRLPIRVELEALTEEDLAKILTEPKASLSEQYKALLA 361 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 TEGI L F++D ID +A A ++N T +IGARRL T+MER+L+++S+ AS+ + +++ I Sbjct: 362 TEGITLQFSKDGIDKIAKSAWHVNETTENIGARRLHTLMERILDELSYEASERKGESITI 421 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D YV + D D+ +IL Sbjct: 422 DENYVANTLDDLLENEDLSRYIL 444 >gi|34495857|ref|NP_900072.1| ATP-dependent protease ATP-binding subunit HslU [Chromobacterium violaceum ATCC 12472] gi|62286852|sp|Q7P112|HSLU_CHRVO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|34101712|gb|AAQ58080.1| heat shock protein hslU [Chromobacterium violaceum ATCC 12472] Length = 448 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/451 (49%), Positives = 302/451 (66%), Gaps = 24/451 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+EIV ELD++IIGQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 QMTPQEIVHELDQHIIGQHKAKRAVAIALRNRWRRQQVAEPLRSEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+V+ IIRDLVDVAI RE+ R + Sbjct: 63 KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVDTIIRDLVDVAIKDTREAAIKRNRTR 122 Query: 126 ASINAEERILDALVG------------------KTATSNTREVFRKKLRDGEISDKEIDI 167 A AEERILD L+ K TR+ FRK LR+G+ DKEI++ Sbjct: 123 AEDAAEERILDVLLPQPRKQPSGFFAEEPAVEEKHEDGATRQKFRKMLREGKFDDKEIEL 182 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 E+A ++ + N P G L +F +G+G+K+ +M V + +L+ +E+ +L Sbjct: 183 EIAAPAAQM-NVMAPPGMEDFASQLQGMFQG-LGAGKKQTAKMKVADAFKQLIDEEAAKL 240 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVST 286 ++ + + ++++ VE GIVF+DE DK+ +R G+ G VSR GVQRDLLPLVEG++VST Sbjct: 241 VNEEELKAEALKNVEQNGIVFIDEIDKVTSRGEGHSGADVSRAGVQRDLLPLVEGTTVST 300 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG + TDHILFIASGAF +S+P+DL+PE+QGR P+RV L SL+ DF+ ILT T + L Sbjct: 301 KYGMVKTDHILFIASGAFQLSKPSDLIPELQGRLPIRVELSSLSVDDFKAILTSTNACLT 360 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ TEG+ L F + I LA++A +N +IGARRL TVME++LE+++F D Sbjct: 361 RQYQALLATEGVELAFEDSGIQRLAEIAWQVNEKTENIGARRLYTVMEKLLEEVAF---D 417 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ID YV +G+ D+ ++L Sbjct: 418 AKSGACRIDGAYVDGKLGEVAEREDLARYVL 448 >gi|254281791|ref|ZP_04956759.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium NOR51-B] gi|219677994|gb|EED34343.1| heat shock protein HslVU, ATPase subunit HslU [gamma proteobacterium NOR51-B] Length = 433 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/436 (51%), Positives = 315/436 (72%), Gaps = 8/436 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD++I+GQ DAKRAVAIALRNRWRRQQL +LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPREIVHELDKHIVGQSDAKRAVAIALRNRWRRQQLDDELRAEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APF+KVE TKFTE+GYVGR+VE ++RDL + AI + RE ++V+ +A Sbjct: 61 TEIARRLARLAAAPFVKVEATKFTEVGYVGRDVESMVRDLAETAIKMHREQAMEKVQYRA 120 Query: 127 SINAEERILDALVGKT---ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 AEER+LD L+ + ++TR++ RKKLR+G++ D+E++IE+ + + PG Sbjct: 121 EEAAEERLLDLLLPPDRDDSNTSTRQILRKKLREGDLDDREVEIEITHQGASVDIMAPPG 180 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 + L LFS + SG+ + R+ V++ L+ +E+ +LI+ D + ++++ E Sbjct: 181 MEEM-TEQLQGLFSNLRPSGKSR--RLPVKEALKALVEEEAAKLINHDDLKAEALEAAEQ 237 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GI+F+DE DK+ R G VSREGVQRDLLPL+EG SVSTK+G+I TDHILFIASGA Sbjct: 238 NGIIFIDELDKVAKRGEVGGADVSREGVQRDLLPLIEGCSVSTKHGTIKTDHILFIASGA 297 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH+S+P+DL+PE+QGR P+RV L++L ++F+ ILT+ S+L Q + LM TEG+ L+FT Sbjct: 298 FHLSKPSDLIPELQGRLPIRVELEALGSAEFQRILTEPRSSLTEQNRALMATEGVELEFT 357 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 ED I LA++A +N +IGARRL TVMER+LE++SF+A+D L+++ VVIDA++V Sbjct: 358 EDGIRRLAEIAWQVNEQAENIGARRLHTVMERLLEEVSFTAADAGLEQRQVVIDADFVDE 417 Query: 422 HIGDFPSETDMYHFIL 437 + D+ FIL Sbjct: 418 RLASLAQNEDLSRFIL 433 >gi|332976816|gb|EGK13644.1| ATP-dependent hsl protease ATP-binding subunit HslU [Desmospora sp. 8437] Length = 474 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 220/468 (47%), Positives = 312/468 (66%), Gaps = 34/468 (7%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K + ++PREIV+ELD+YI+GQ +AKRAVA+ALRNR+RR LP DL+DE++PKNIL++GP Sbjct: 9 KQSKQWTPREIVAELDKYIVGQNEAKRAVAVALRNRYRRTLLPEDLKDEVVPKNILMIGP 68 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+ + +E Sbjct: 69 TGVGKTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAEKLEE 128 Query: 122 VREQASINAEERILDALV----GKTATSNTREVF-------RKKLRDGEISDKEID---- 166 V+E+A A+ERI+ LV G N E+ R R+ E ++E++ Sbjct: 129 VKEKAEELADERIISLLVPSGKGNNQFKNPLEMLFNSGKGERNTDREEENRNQELEQKRR 188 Query: 167 --------------IEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIR 209 + + + D+ G+SV GI N+ E+ + M KK+ R Sbjct: 189 QLRFQLKSGSLEDEVIEIEVEDQLPMMDMFAGSSVEQMGI-NMQEMLGQFMPKKTKKR-R 246 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + +++ L+++E +LIDMD V +DS+ VE GI+F+DE DKI +D G VSRE Sbjct: 247 LPIREARKVLIQEEGQKLIDMDQVQQDSLNRVEQTGIIFIDEVDKIAGKDRQGGPDVSRE 306 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+D++PE+QGRFP+RV L L Sbjct: 307 GVQRDILPIVEGSTVITKYGPVKTDHILFIAAGAFHTAKPSDMIPELQGRFPIRVELADL 366 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 DF ILT+ + L+ QY L++TEGI + FTED+I +A +A ++N +IGARRL Sbjct: 367 TAEDFVRILTEPKGALLKQYTALLETEGIQVTFTEDAIREIAKLAADVNRGTENIGARRL 426 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ER+LE++SF A D+ + V + EYV+ +GD D+ +IL Sbjct: 427 HTILERLLEELSFEAPDITLEEVQVTPEYVQQRLGDIAGNRDLSQYIL 474 >gi|325108994|ref|YP_004270062.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces brasiliensis DSM 5305] gi|324969262|gb|ADY60040.1| ATP-dependent hsl protease ATP-binding subunit hslU [Planctomyces brasiliensis DSM 5305] Length = 459 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/454 (46%), Positives = 315/454 (69%), Gaps = 26/454 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 TF +PREIV+ LD++I+GQ DAKRAVAIALRNR+R +QL +R E+ PKNI+++GPTG Sbjct: 12 TFRSTPREIVAALDKHIVGQADAKRAVAIALRNRYRWRQLDESVRQEITPKNIIMMGPTG 71 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA L GAPFIKVE TK+TE+GY GR+VE +IRDLV+ AI +VR+ +R+EVR Sbjct: 72 VGKTEITRRLAALTGAPFIKVEATKYTEVGYYGRDVESMIRDLVEAAITLVRDKKREEVR 131 Query: 124 EQASINAEERILDALVGKTATS---------------NTREVFRKKLRDGEISDKEIDIE 168 ++A E+RILD L+ S RE FR+ LR G++ ++E++++ Sbjct: 132 DKAEERVEDRILDLLLPAQPASWSPDVKAEDTENRHSRNREKFREMLRKGQLEEREVELK 191 Query: 169 VADTSSDISNFDIPGGASVGI----LNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 V S + F ++VG+ +++ +F K M +++ ++ + + L+ ES Sbjct: 192 VEQKGSSMPMF-----SNVGMEQMEMDVQNMFEKFMPKKTQQR-KVPISEARKILLDQES 245 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSS 283 + L+D D + ++I++ ++ GIVF+DE DKI G+ VSR+GVQRDLLP+VEG++ Sbjct: 246 EALLDKDAIQDEAIRLAQDSGIVFIDEIDKICGPQEGSKSADVSRQGVQRDLLPIVEGTT 305 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 V TKYGS+ T+++LFIA+GAFH SRP+DL+PE+QGRFP+RV L L + DF ILT+ ++ Sbjct: 306 VQTKYGSVKTEYMLFIAAGAFHRSRPSDLMPELQGRFPIRVELIDLTRDDFVRILTEPKT 365 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +L QYK+L+ +G+ ++FT+D I+ALAD+A ++N + +IGARRL T++ER+LEDISFS Sbjct: 366 SLTEQYKQLLAIDGVTIEFTQDGIEALADIAFHVNQSTQNIGARRLHTILERLLEDISFS 425 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A T+ +D +YVR + + + D+ FIL Sbjct: 426 APADDLMTLTVDGKYVRHQLQEIAHDEDLSKFIL 459 >gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum seropedicae SmR1] gi|300072310|gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 219/450 (48%), Positives = 312/450 (69%), Gaps = 19/450 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIVSELD++++GQ AKRAV+IALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDLVD+ I RE +VR Sbjct: 61 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 120 Query: 125 QASINAEERILDALVG-----------------KTATSNTREVFRKKLRDGEISDKEIDI 167 +A AE+RILD L+ K + TR+ FRK+LR+G + D+EI++ Sbjct: 121 RAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDDKNTTRQTFRKRLREGALDDREIEL 180 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 E+A+ + + PG + + +FS +G+ RKK ++ +++ L+ +E+ +L Sbjct: 181 ELAEAAPSMEIMAPPGMEEM-TEQIKSMFSG-LGNQRKKARKIKIKEAMKLLIEEEAAKL 238 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 ++ + + + +I VE GIVFLDE DKI R VSR GVQRDLLPLVEG++V+TK Sbjct: 239 VNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTK 298 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ +DF ILT T++ L Sbjct: 299 YGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTK 358 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ L+ TEG+ L+F + I LA+++ ++N +IGARRL TVME++LE+ISF+A + Sbjct: 359 QYEALLATEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTAGEA 418 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ++IDA+YV +G+ + D+ ++L Sbjct: 419 GVEGLLIDADYVNERLGELAVDEDLSRYVL 448 >gi|289207301|ref|YP_003459367.1| heat shock protein HslVU, ATPase HslU [Thioalkalivibrio sp. K90mix] gi|288942932|gb|ADC70631.1| heat shock protein HslVU, ATPase subunit HslU [Thioalkalivibrio sp. K90mix] Length = 444 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/445 (48%), Positives = 305/445 (68%), Gaps = 16/445 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV ELDRYIIGQ +AKR+VA+ALRNRWRR+QLP +L+ E+ PKNIL++GPTGVG Sbjct: 3 DMTPREIVQELDRYIIGQDEAKRSVAVALRNRWRRRQLPPELQPEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL + A+ +R+ E R + Sbjct: 63 KTEIARRLAKLARAPFIKIEATKFTEVGYVGRDVESIIRDLAEAAVKQLRDEAIKENRVK 122 Query: 126 ASINAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 A AEERILDAL+ + + S TR+ RK+LR+G++ ++EIDIEV Sbjct: 123 AEDAAEERILDALLPRPRNAGFTESAQDDSNSETRQKLRKRLREGDLDEREIDIEVQQNP 182 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L +F +G + + R+ + + L+ +E+ RLI+ + + Sbjct: 183 HGVEIMTPPGMEEMAS-QLQSMFQN-LGGQKTRSRRLQIAEARKLLIEEEAARLINDEEL 240 Query: 234 HRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 +I+ VE GIVFLDE DK+ D G+ VSREGVQRDLLPL+EG++VSTK G + Sbjct: 241 KERAIERVEQSGIVFLDEIDKVAKGSDKGSSGEVSREGVQRDLLPLIEGTTVSTKLGMVR 300 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L +L+ F ILT+ ++L QY EL Sbjct: 301 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELDALSADAFVRILTEPTASLTEQYVEL 360 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 MKTEG+ L F ED + LA++A ++N+ +IGARRL TV+ER+L+D+++ A D+ + V Sbjct: 361 MKTEGVELRFEEDGVRRLAEIAFDVNARTENIGARRLHTVLERLLQDVAYRAPDV-DGAV 419 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 ++D +V + D D+ +IL Sbjct: 420 IVDRAFVDERLADLVENEDLSRYIL 444 >gi|212702929|ref|ZP_03311057.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098] gi|212673517|gb|EEB34000.1| hypothetical protein DESPIG_00965 [Desulfovibrio piger ATCC 29098] Length = 436 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/436 (48%), Positives = 308/436 (70%), Gaps = 6/436 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ LP +LRDE+ PKNI+++GPTGVG Sbjct: 3 TLTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLPEELRDEVAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE VR Sbjct: 63 KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRAA 122 Query: 126 ASINAEERILDALVGKTA---TSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDI 181 A AE R+LD L+ + ++TRE R++ R G + D+E+++EV + + + F I Sbjct: 123 AEAAAESRLLDLLLPNSFGGDRNDTREKLRQQFRLGFMDDREVEVEVTEQPAQGVDMFAI 182 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 PG +G + ++FSK R ++ +M V++ Y L+++ES +L+D + + + + V Sbjct: 183 PGMEQMGN-QVRDMFSKAFPPRRSRR-KMKVREAYNVLIQEESGKLVDQEALVDKARERV 240 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 E GI+F+DE DKI + +SREGVQRDLLP+VEGS+V+TKYG + TDHILFIA+ Sbjct: 241 EQMGIIFIDEIDKIASSSQNRTSDISREGVQRDLLPIVEGSAVNTKYGMVRTDHILFIAA 300 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH S+P+D++PE+QGRFP+RV L +L K +F ILT+ + L QY L+ TE I L Sbjct: 301 GAFHFSKPSDMIPELQGRFPLRVELNALGKDEFLRILTEPHNALTRQYAALLGTEQIRLQ 360 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 F+ED I+ +A A +N+T +IGARRL T+ME++L DISF A D+ +V++ YV+ Sbjct: 361 FSEDGIEEIAAFAEEINATSENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRAYVQE 420 Query: 422 HIGDFPSETDMYHFIL 437 H+ D + D+ +IL Sbjct: 421 HLRDVREDQDLSQYIL 436 >gi|209696145|ref|YP_002264075.1| ATP-dependent protease ATP-binding subunit HslU [Aliivibrio salmonicida LFI1238] gi|238065793|sp|B6EML9|HSLU_ALISL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|208010098|emb|CAQ80423.1| ATP-dependent hsl protease ATP-binding subunit HslU (heat shock protein HslU) [Aliivibrio salmonicida LFI1238] Length = 444 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/442 (49%), Positives = 298/442 (67%), Gaps = 12/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELD +IIGQ AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLQPELRAEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL DVAI + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDVAIKMTHQQAVEKVKFRA 123 Query: 127 SINAEERILDALV-------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AE+RILD L+ GK S TR+ FRKKLR+G++ DKEID++VA Sbjct: 124 EEQAEDRILDILLPPARDAWGKNEEGDNDSGTRQSFRKKLREGKLDDKEIDVDVAAPQVG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G KK +M ++ L +E +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGMFQNLSGGETTKKRKMKIKDALKALAEEEGAKLVNPEELKE 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VEN+GIVF+DE DKI + VSREGVQRDLLPLVEGS+VSTK+G + TDH Sbjct: 243 QAIFNVENHGIVFIDEIDKICKGSNSQSGDVSREGVQRDLLPLVEGSTVSTKHGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFI SGAF +++P+DL+PE+QGR P+RV L++L +DF+ ILT+ ++L QY L+ T Sbjct: 303 MLFITSGAFQMAKPSDLIPELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + ++FTED I +A+ A +N T +IGARRL TVMER++E+IS+ AS+ ++ +D Sbjct: 363 ENVNIEFTEDGISRIAESAFRVNETTENIGARRLHTVMERLMEEISYDASEKGGDSLTVD 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV +G+ D+ FIL Sbjct: 423 DAYVTSRLGELIENEDLSRFIL 444 >gi|303326952|ref|ZP_07357394.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp. 3_1_syn3] gi|302862940|gb|EFL85872.1| ATP-dependent protease HslVU, ATPase subunit [Desulfovibrio sp. 3_1_syn3] Length = 437 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/437 (47%), Positives = 307/437 (70%), Gaps = 7/437 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+ELD++++GQ+ AKR VA+A+RNRWRRQ L +LRDE+ PKNI+++GPTGVG Sbjct: 3 TLTPREIVAELDKFVVGQEQAKRMVAVAVRNRWRRQHLSPELRDEVAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPFIKVE TKFTE+GYVGR+VE ++RDL+++ IN+VRE VR+ Sbjct: 63 KTEIARRLAKLSGAPFIKVEATKFTEVGYVGRDVESMVRDLMEIGINLVREEENARVRKA 122 Query: 126 ASINAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFD 180 A AE R++D L+ G+ ++TR+ ++ R G + +E+++EV + + F Sbjct: 123 AEAAAESRLMDLLLPNSFGQEERNSTRDKLLQQFRLGFLDQREVEMEVTEQGGQGVDIFA 182 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 IPG +G + ++FSK R ++ +M ++ + L+++ES +L+D + + + + Sbjct: 183 IPGMEQMG-GQVKDMFSKAFPPRRSRR-KMKIRDAFNVLVQEESGKLVDQEALTERAKER 240 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VE GI+F+DE DKI + + +SREGVQRDLLP+VEGSSV+TKYG + TDHILFIA Sbjct: 241 VEQSGIIFIDEIDKIASSSQNSTSDISREGVQRDLLPIVEGSSVNTKYGMVRTDHILFIA 300 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAFH S+P+D++PE+QGRFP+RV L++L K +F ILT+ ++ L QY+ L+ TE I L Sbjct: 301 AGAFHFSKPSDMIPELQGRFPLRVELQALGKEEFLRILTEPDNALTKQYEALLGTEQIRL 360 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT D ++ +A A + NS +IGARRL T+ME++L DISF A D+ +V++ +YV Sbjct: 361 SFTRDGLEEVAAFAEDTNSRTENIGARRLYTIMEKILADISFDAPDMPGAQIVVNRDYVC 420 Query: 421 LHIGDFPSETDMYHFIL 437 H+ D + D+ +IL Sbjct: 421 EHLQDVRKDQDLSQYIL 437 >gi|331092892|ref|ZP_04586548.2| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020939|gb|EGI00996.1| ATP-dependent protease ATP-binding subunit HslU [Pseudomonas syringae pv. oryzae str. 1_6] Length = 396 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/400 (52%), Positives = 287/400 (71%), Gaps = 16/400 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIV ELDR+IIGQ DAKRAVAIALRNRWRR QLP +LR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVHELDRHIIGQDDAKRAVAIALRNRWRRMQLPEELRVEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D AI ++RE +VR Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLADAAIKLLREQEIIKVRH 120 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 +A AE+RILDAL+ ++ SNTR++FRK+LR+G++ DKEI++E+ + Sbjct: 121 RAEDAAEDRILDALLPPARAGFNEDQAQSNDSNTRQLFRKRLREGQLDDKEIELEINEAV 180 Query: 174 S-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 DIS P G L LF+ MG G+ K ++ V+ + +E+ RL++ + Sbjct: 181 GVDIS---APPGMEEMTNQLQSLFAN-MGKGKTKSRKLKVKDALKLVREEEAGRLVNEEE 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + +++ VE +GIVF+DE DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + Sbjct: 237 LKAKALEAVEQHGIVFIDEIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIASGAFH+S+P+DL+PE+QGR P+RV LK+L+ DF IL++ ++L QY+EL Sbjct: 297 TDHILFIASGAFHLSKPSDLVPELQGRLPIRVELKALSPQDFERILSEPHASLTEQYREL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 +KTEG+ ++F + I LA++A +N +IGARRL T+ Sbjct: 357 LKTEGLKIEFKPEGIKRLAEIAWQVNEKTENIGARRLHTL 396 >gi|225025700|ref|ZP_03714892.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC 23834] gi|224941481|gb|EEG22690.1| hypothetical protein EIKCOROL_02602 [Eikenella corrodens ATCC 23834] Length = 445 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/444 (48%), Positives = 304/444 (68%), Gaps = 17/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++IIGQQ AK+AVA+ALRNR+RR Q+ L+ E++PKNIL++GPTGVGK Sbjct: 6 MTPQEIVHELDKHIIGQQQAKKAVAVALRNRYRRSQVAEPLQSEIVPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL+++A+ +RE + R++A Sbjct: 66 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDSIVRDLMEIALKNLREQAVRKNRDRA 125 Query: 127 SINAEERILDALV---------GKTAT----SNTREVFRKKLRDGEISDKEIDIEVADTS 173 AE R+LDAL+ G+ A S+TR+ FR+ LR GE+ DKEI+IE++ S Sbjct: 126 QDAAENRVLDALLPPPPQTGFEGEPAEPQPESHTRKKFREMLRRGELDDKEINIELSQAS 185 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 P G L ++F+ + GR K ++ V L+ +E+ +LI+ + + Sbjct: 186 PASMQVMGPPGMEEFSSQLQDMFAN-LSKGRTKPHKIKVAAAMKLLLDEEAAKLINEEEL 244 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++ VE +GIVFLDE DKI A + +G VSR+GVQRDLLPLVEG++V TKYG I T Sbjct: 245 REQAVHAVEQHGIVFLDEIDKIAADSNRHGGDVSRQGVQRDLLPLVEGTTVQTKYGMIKT 304 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL DF+ ILT T+++L QY+ L+ Sbjct: 305 DHILFIASGAFHLSKPSDLIPELQGRFPIRVELSSLTVEDFQAILTSTDASLTKQYQALL 364 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 T+G+ LDF D I LA++A +N +IGARRL TV+E++LED+SF A + Sbjct: 365 ATDGVELDFAPDGITRLAEIAFQVNEKTENIGARRLHTVLEKLLEDVSFHAP---QGITQ 421 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I A YV + + + D+ ++L Sbjct: 422 ITAAYVDERLAEVAEQEDLARYVL 445 >gi|260892478|ref|YP_003238575.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii KC4] gi|260864619|gb|ACX51725.1| heat shock protein HslVU, ATPase subunit HslU [Ammonifex degensii KC4] Length = 463 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/464 (46%), Positives = 313/464 (67%), Gaps = 35/464 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV+ELD+YI+GQ++AKRAVAIALRNR+RR LP +LRDE+MPKNIL++GPTGVG Sbjct: 3 DLTPRQIVAELDKYIVGQEEAKRAVAIALRNRYRRSLLPPELRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE TKFTEIGYVGR+VE ++RDLV+ A+ +V++ + V ++ Sbjct: 63 KTEIARRLARLVRAPFVKVEATKFTEIGYVGRDVEAMVRDLVETAVRMVKQEKMAAVEDK 122 Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155 A A ER+++ LV + R+V R++L Sbjct: 123 AQELAIERLVEILVPAPAAPARNPLELLFGYSRPAEGMGAEERRAAEELAYRRQVVRERL 182 Query: 156 RDGEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ- 213 GE+ D+ ++IEV D S+ + F G +GI NL + + +K++ + Sbjct: 183 LRGELEDEYVEIEVEDRSTPFLEIFSAAGVEEMGI-NLQDFMGNLFPPRKKRRRVKVKEA 241 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + Y L + E+ +LIDM+ V ++I+ E +GI+F+DE DKI ++ G G VSR GVQR Sbjct: 242 RRY--LAQQEAAKLIDMEEVTAEAIKRAEEHGIIFIDEIDKIAGKEIGPGPDVSRAGVQR 299 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V TKYG + TDHILFIA+GAFH ++P+DL+PE+QGRFP+RV LK L + D Sbjct: 300 DILPIVEGSTVPTKYGPVKTDHILFIAAGAFHTAKPSDLIPELQGRFPIRVELKPLTRED 359 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ + LI QY+ L+ TEG+ L+FT D++ A+AD+A +N +IGARRL TVM Sbjct: 360 FLQILTEPANALIRQYQALLATEGVKLEFTPDALQAVADIAYTVNEQTENIGARRLHTVM 419 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+++EDISF+A +++ + +VIDA+YVR + D+ +IL Sbjct: 420 EKLIEDISFAAPEMKGQEIVIDADYVRRKLEPIVKREDLSRYIL 463 >gi|94264967|ref|ZP_01288738.1| Heat shock protein HslU [delta proteobacterium MLMS-1] gi|93454570|gb|EAT04848.1| Heat shock protein HslU [delta proteobacterium MLMS-1] Length = 498 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/480 (47%), Positives = 317/480 (66%), Gaps = 49/480 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV LD +IIGQ +AKR+VAIALRNRWRRQQ+P LRDE+ PKNI+++GPTGVG Sbjct: 20 SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+ Sbjct: 80 KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139 Query: 126 ASINAEERILDALV---------GKTAT-------------------------------- 144 A++ AEER+LD LV KT++ Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199 Query: 145 ------SNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFS 197 +TRE FR+ LRDG++ +E++IEV S + + GG N+ ++F Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259 Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257 K M + K R+ V + L + E+++L+D + V R +I+ E GIVFLDE DKI + Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318 Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317 + +G VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GRFP+RV L SL + +F ILT+ ++ L+ QY L+ TE I L+F + +I LA +A ++ Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 NS +IGARRL T++ER+L+++SF A DL+EK + AEYVR + + D+ F+L Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498 >gi|94268397|ref|ZP_01291165.1| Heat shock protein HslU [delta proteobacterium MLMS-1] gi|93451624|gb|EAT02419.1| Heat shock protein HslU [delta proteobacterium MLMS-1] Length = 498 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/480 (47%), Positives = 317/480 (66%), Gaps = 49/480 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV LD +IIGQ +AKR+VAIALRNRWRRQQ+P LRDE+ PKNI+++GPTGVG Sbjct: 20 SLTPREIVQRLDDFIIGQDEAKRSVAIALRNRWRRQQVPPPLRDEIAPKNIIMIGPTGVG 79 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA +PFIKVE +KFTE+GYVGR+VE +IRDL+++AI +VR+ +R +V E+ Sbjct: 80 KTEIARRLAVLAQSPFIKVEASKFTEVGYVGRDVESMIRDLLELAIAMVRDEQRQQVMEK 139 Query: 126 ASINAEERILDALV---------GKTAT-------------------------------- 144 A++ AEER+LD LV KT++ Sbjct: 140 AAVMAEERLLDLLVPPPPKTSRGAKTSSYGPAGVDAASVLATPPPGADGTAAAAALPGGG 199 Query: 145 ------SNTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFS 197 +TRE FR+ LRDG++ +E++IEV S + + GG N+ ++F Sbjct: 200 ATAERGESTREKFRRMLRDGQLDQREVEIEVEQARSGPMMDVFAAGGMEDMESNIRDMFG 259 Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257 K M + K R+ V + L + E+++L+D + V R +I+ E GIVFLDE DKI + Sbjct: 260 K-MFPPKTSKRRLKVGEAREVLRQSEAEKLVDQEKVIRLAIRRTEQSGIVFLDEIDKITS 318 Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317 + +G VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+PADL+PE+Q Sbjct: 319 KSGSHGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPADLIPELQ 378 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GRFP+RV L SL + +F ILT+ ++ L+ QY L+ TE I L+F + +I LA +A ++ Sbjct: 379 GRFPIRVELTSLGEEEFYRILTEPQNALLKQYIALLATEEIELEFADPAIRELARLAADV 438 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 NS +IGARRL T++ER+L+++SF A DL+EK + AEYVR + + D+ F+L Sbjct: 439 NSRTENIGARRLHTMLERLLDNLSFEAPDLEEKKFAVSAEYVREQLAEVAENEDLSRFVL 498 >gi|15617169|ref|NP_240382.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682475|ref|YP_002468859.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11132905|sp|P57116|HSLU_BUCAI RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802300|sp|B8D899|HSLU_BUCAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|25296055|pir||D84997 heat shock protein hslU [imported] - Buchnera sp. (strain APS) gi|10039234|dbj|BAB13268.1| heat shock protein hslU [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|90186501|gb|ABD91523.1| putative heat shock protein hslU [Acyrthosiphon pisum] gi|219622208|gb|ACL30364.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086301|gb|ADP66383.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086875|gb|ADP66956.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087465|gb|ADP67545.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 443 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/444 (48%), Positives = 305/444 (68%), Gaps = 17/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR--ESRRDEVRE 124 T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R ++++VR Sbjct: 64 TEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNIKKNKVRV 123 Query: 125 QASINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 + + EE+ILD LV + + T + FRKKLR+G + +KEI+I + T+ Sbjct: 124 EEIV--EEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTT 181 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + PG + L LF +G +K R+ ++ L +E+ +LI+ + + Sbjct: 182 MGVEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEI 239 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +++I VE GIVF+DE DKI R +G +SREGVQRDLLPLVEG +VSTK+G + T Sbjct: 240 KKEAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKT 299 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF S P+DL+PE+QGR P++V L++L DF ILT+ +++ QYK LM Sbjct: 300 DHILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALM 359 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +TEG+ ++FT++ I +A+ A +N ++ +IGARRL TV+E+++EDISF+ASD + T+ Sbjct: 360 ETEGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIE 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I++ YV H+ S D+ FIL Sbjct: 420 INSNYVEEHLDQLTSNEDLGRFIL 443 >gi|225874219|ref|YP_002755678.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium capsulatum ATCC 51196] gi|225792331|gb|ACO32421.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium capsulatum ATCC 51196] Length = 523 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/438 (48%), Positives = 305/438 (69%), Gaps = 39/438 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD+Y++GQ+ AKRAVAIALRNR RRQ+L DL DE+MPKNI+++GPTGVG Sbjct: 18 ELTPREIVGELDKYVVGQKAAKRAVAIALRNRMRRQKLTPDLADEIMPKNIIMIGPTGVG 77 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L +PF+KVE +KFTE+GYVGR+VE ++RDLV++AI++VRE + +EV ++ Sbjct: 78 KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESMVRDLVEIAIDMVREEKLEEVEDK 137 Query: 126 ASINAEER------------------------------ILDALVGKTATSN----TREVF 151 A +NAEER I+ +AT TRE Sbjct: 138 AELNAEERLLDLLLPPPATQTPAAAPAGAGETPDAHGAIILPPPAASATQESQQRTREKL 197 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209 R++ R+G++ D+ ++++V + + +F+I V + NL ++ + G R KK + Sbjct: 198 RQQFREGKLDDRMVELDVRERGA--PSFEIISNQGVEEMDINLKDVLPSIFGQ-RTKKRK 254 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 M V + + L+++E RLIDMD V R +++ VE GIVFLDE DKI R+ G+G VSRE Sbjct: 255 MKVAEAFEYLVQEEESRLIDMDQVTRAAVERVETSGIVFLDEIDKIAGREGGHGPDVSRE 314 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEG++V+T+YG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL Sbjct: 315 GVQRDILPIVEGTTVNTRYGMVRTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELQSL 374 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 DF ILT+ +S+L+ Q L++TEG+ L+FT ++I +A A ++N T +IGARRL Sbjct: 375 TVEDFIRILTEPKSSLVKQSTALLETEGLKLEFTPEAIAEMAQFAFSVNETTENIGARRL 434 Query: 390 QTVMERVLEDISFSASDL 407 T+ME+VL+DISF A DL Sbjct: 435 HTIMEKVLDDISFLAPDL 452 >gi|21674017|ref|NP_662082.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS] gi|32129636|sp|Q8KD63|HSLU_CHLTE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21647165|gb|AAM72424.1| heat shock protein HslU [Chlorobium tepidum TLS] Length = 491 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/474 (46%), Positives = 315/474 (66%), Gaps = 43/474 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P +IV +LD+YIIGQ+DAKR+VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 19 QLTPTQIVEQLDKYIIGQKDAKRSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLV+ A+ +VR + +EVRE+ Sbjct: 79 KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVEQAVAMVRSEKTEEVREK 138 Query: 126 ASINAEERILDALVGKTA---------------------------------TSNTREVFR 152 A++ EER+LD L+ + +R+ R Sbjct: 139 AALLVEERLLDILLPPVSGLEESEHVGDEEEAVVVEGDAEVVVEKNLEREINRKSRQKMR 198 Query: 153 KKLRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 ++LRDG + D++I++EV+ D + P G I N+ + M RKK+ RM+ Sbjct: 199 ERLRDGRMEDRQIELEVSSDGQGGMMQIFGPLGQMEEIGNIMQDLMSGMPKKRKKR-RMT 257 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSR 268 + + L ++E +LIDMD V +++++ VE+ GIVF+DE DKI A +G G VSR Sbjct: 258 IAEARKYLEQEEVQKLIDMDAVVKEALRKVEDSGIVFIDEIDKIAAPTTGAGGKGPDVSR 317 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRDLLP+VEG++VSTKYG + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LKS Sbjct: 318 EGVQRDLLPIVEGTAVSTKYGVVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELKS 377 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L + DF LILT + LI QY+ ++KTE I L+FTE++I +A A +N TV +IGARR Sbjct: 378 LTEEDFFLILTQPRNALIKQYRAMLKTEQIDLEFTEEAIREIARTAAKVNETVENIGARR 437 Query: 389 LQTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ +LE++ F ++ ++ +VID VR +G ++ D+ +IL Sbjct: 438 LHTILTNLLEELMFGIPEMVMDGTIDRNIVIDDNQVREKLGKLVADRDLSQYIL 491 >gi|146329822|ref|YP_001210213.1| ATP-dependent protease ATP-binding subunit HslU [Dichelobacter nodosus VCS1703A] gi|166221477|sp|A5EX25|HSLU_DICNV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|146233292|gb|ABQ14270.1| heat shock protein HslVU, ATPase subunit HslU [Dichelobacter nodosus VCS1703A] Length = 451 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/443 (48%), Positives = 301/443 (67%), Gaps = 11/443 (2%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV ELDR+IIGQ+ AKRAVA ALR+RWRR+Q+ LR E+ PKNIL++GPTGV Sbjct: 10 LNMTPREIVEELDRHIIGQKHAKRAVANALRSRWRRKQVAEPLRSEITPKNILMIGPTGV 69 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVGR+V+ IIRDLV+ +I + + ++ V+ Sbjct: 70 GKTEIARRLAKLAEAPFIKVEATKFTEVGYVGRDVDSIIRDLVETSIKLEKNRAKERVKS 129 Query: 125 QASINAEERILDALV---------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 +A A ER+LD LV G+ R+++R+++ E++D I+IE + S Sbjct: 130 KAREAALERVLDVLVPRKKQTAWTGEEEIDPARKMYRERILREEMNDTVIEIETNQSMSA 189 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 P G LSE+F K G +K K +M++ K +L +E++ L+ + + Sbjct: 190 NVEIMTPPGMEEMSSQLSEMF-KSFGREKKTKRKMTIAKALIQLAEEEAEALVSHEEIKS 248 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I E GIVF+DE DK+ R G VSREGVQRDLLPLVEG ++STKYG I TDH Sbjct: 249 AAIDNAEQNGIVFIDEIDKVARRSDVGGADVSREGVQRDLLPLVEGCTISTKYGMIKTDH 308 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+++P+DL+PE+QGR PVRV L +L DF+ ILT+ +++LI QY L T Sbjct: 309 ILFIASGAFHLAKPSDLIPELQGRLPVRVELDALTADDFKRILTEPDASLIKQYTALFAT 368 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 E + L+FTED I+ +A++A ++N T +IGARRL T++ER+ + +SF A+D ++ V+I Sbjct: 369 EQLHLEFTEDGINKIAEIAYHVNKTTENIGARRLHTLIERLTDSLSFDAADRRDGDRVII 428 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 DA YV +G+ + D+ FIL Sbjct: 429 DAAYVEKTLGEISNNEDLSRFIL 451 >gi|226938939|ref|YP_002794010.1| ATP-dependent protease ATP-binding subunit HslU [Laribacter hongkongensis HLHK9] gi|226713863|gb|ACO73001.1| HslU [Laribacter hongkongensis HLHK9] Length = 448 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 229/453 (50%), Positives = 312/453 (68%), Gaps = 23/453 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +P+EIVSELD++IIGQ AK+AVAIALRNRWRRQ + L++E+ PKNIL++GPT Sbjct: 1 MSAQMTPQEIVSELDKHIIGQAAAKKAVAIALRNRWRRQMVAEPLKNEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+LA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+ RE + Sbjct: 61 GVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVETIIRDLADIAVKHAREQAIRDN 120 Query: 123 REQASINAEERILDALV---------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 R +A AE+RILDAL+ + ++TR+ FRK LR+G + DKEIDI Sbjct: 121 RVRAEDAAEDRILDALLPPPRQPGFSGENVPAAERHDADTRQKFRKMLREGRLDDKEIDI 180 Query: 168 EVADTSSDISNF--DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 E+A + + F ++PG + L LFS MG GRKK +M +++ + +E+ Sbjct: 181 EIAAQAPQVQMFAPNMPGMNDL-TEQLQGLFSN-MGGGRKKTQKMKIREALRVVTDEEAA 238 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSV 284 +L++ + + +IQ VE GIVFLDE DK+ AR G +G VSR GVQRDLLPLVEG++V Sbjct: 239 KLVNEEEIKLAAIQNVEQNGIVFLDEIDKVTARGEGMSGADVSRAGVQRDLLPLVEGTAV 298 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG I+TDHILFIASGAFH+++P+DLLPE+QGRFP+RV L +L DF ILT+T++ Sbjct: 299 STKYGMIHTDHILFIASGAFHLAKPSDLLPELQGRFPIRVELAALAVDDFVQILTNTDAC 358 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L QY+ L+ TEG LDFT+D I +A++A +N +IGARRL TV+E++LE++SF Sbjct: 359 LTRQYQALLATEGTQLDFTDDGIRRMAEIAFQVNEKTENIGARRLHTVIEKLLEEVSF-- 416 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D + ++ IDA YV + D+ +IL Sbjct: 417 -DARTGSITIDAAYVDTKLEGIAQREDLARYIL 448 >gi|310641539|ref|YP_003946297.1| ATP-dependent hsl protease ATP-binding subunit hslu [Paenibacillus polymyxa SC2] gi|309246489|gb|ADO56056.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus polymyxa SC2] Length = 466 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/464 (45%), Positives = 321/464 (69%), Gaps = 34/464 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTGVG Sbjct: 5 SLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+ R + V+++ Sbjct: 65 KTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKSERTENVKDK 124 Query: 126 ASINAEERILDALV-GKTATSNTREVF--------------------------RKK---- 154 A A ERI++ LV + + + R F R+K Sbjct: 125 AEDMANERIVNILVPAEKSNKSQRNPFEMLFGNNTGTSVEEEPPQQDGTLAEKRRKAKFD 184 Query: 155 LRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 L G++ D I+I+V DT+ ++ + F G +G +N+ E+F + R KK ++ ++ Sbjct: 185 LLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMG-MNMQEMFGSFLPK-RTKKRKLPIK 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L++DE+ +LIDMD V ++S++ E GI+F+DE DKI ++ G+G VSREGVQR Sbjct: 243 EARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQR 302 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL + Sbjct: 303 DILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLDE 362 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ ++ L QY EL++TE I ++F+ ++I +A +A ++N +IGARRL T++ Sbjct: 363 FVSILTEPKNALTKQYTELLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTIL 422 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LED+SF A +L ++I EYVR +GD D+ +IL Sbjct: 423 EKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466 >gi|219681920|ref|YP_002468306.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471629|ref|ZP_05635628.1| ATP-dependent protease ATP-binding subunit HslU [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254802299|sp|B8D8E2|HSLU_BUCA5 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|219624763|gb|ACL30918.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 443 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/442 (47%), Positives = 301/442 (68%), Gaps = 13/442 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IVSELD++IIGQ+ AKRAV+IALRNRWRR QL ++LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPPQIVSELDKFIIGQEKAKRAVSIALRNRWRRMQLNSELRYEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA +PFIKVE TKFTE+GYVG+ V+ IIRDL D AI ++R ++ + + Sbjct: 64 TEIARRLAKLADSPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMIRIKNINKNKVRV 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 EE+ILD LV + + T + FRKKLR+G + +KEI+I + T+ Sbjct: 124 EEIVEEKILDVLVPTPKKNWTESEKNESLAKTIQTFRKKLREGVLDEKEIEINILSTTMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF +G +K R+ ++ L +E+ +LI+ + + + Sbjct: 184 VEIMAPPGMEEL-TNQLQSLFQN-LGGHKKSSRRLKIKDAIVLLTEEEAAKLINQEEIKK 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++I VE GIVF+DE DKI R +G +SREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 EAINAVEQNGIVFIDEIDKICRRGDSSGPDISREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF S P+DL+PE+QGR P++V L++L DF ILT+ +++ QYK LM+T Sbjct: 302 ILFIASGAFQTSTPSDLIPELQGRLPIKVELQALTIDDFEKILTEPTASITAQYKALMET 361 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++FT++ I +A+ A +N ++ +IGARRL TV+E+++EDISF+ASD + T+ I+ Sbjct: 362 EGVYINFTKEGIRNIAEAAWKVNESIENIGARRLHTVLEKLMEDISFNASDNKGNTIEIN 421 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 + YV H+ S D+ FIL Sbjct: 422 SNYVEEHLDQLTSNEDLGRFIL 443 >gi|33594014|ref|NP_881658.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|62286864|sp|Q7VUJ9|HSLU_BORPE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|33564088|emb|CAE43356.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|332383431|gb|AEE68278.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella pertussis CS] Length = 444 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIVSELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 HMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + ++ R+ FRK+LR+G+I D EI+IE+A Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ + +KK ++ V++ + ++ +E+ + ++ D + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+ DF IL++T+++LI QY L+ T Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FT+D I LA++A ++N +IGARRL TVME++LE++SF AS + + ID Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV L + + D+ ++L Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444 >gi|229918622|ref|YP_002887268.1| ATP-dependent protease ATP-binding subunit HslU [Exiguobacterium sp. AT1b] gi|229470051|gb|ACQ71823.1| heat shock protein HslVU, ATPase subunit HslU [Exiguobacterium sp. AT1b] Length = 456 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/461 (47%), Positives = 314/461 (68%), Gaps = 39/461 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IVSELDR++IGQ+DAKRAVAIALRNR+RRQ+L ADLRDE+ PKNIL++GPTGVGK Sbjct: 5 LTPRQIVSELDRFVIGQKDAKRAVAIALRNRYRRQKLSADLRDEVTPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E ++++V+E A Sbjct: 65 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVEASVRLVKEEKKEDVKEPA 124 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD------ 180 A ER+LDAL GK + T + L G+ E +++D SN D Sbjct: 125 ERAATERLLDALQGKAKATPTASNPFEALFGGQTQQPE-------STTDTSNNDRVQLRR 177 Query: 181 ------------------------IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 G G+ NL ++ +++ RK++ +++V++ Sbjct: 178 LLELGELEDRVIEVELEEKQTMDLFQGQGMEGLSNLQDMLGQIVPKKRKQR-KLTVREAR 236 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 P L+ +E++ L+D++ VH ++++ E GI+F+DE DKI A S + GVSREGVQRD+L Sbjct: 237 PLLIAEEAENLLDLNEVHDEAVRRSEQMGIIFVDEIDKI-ATKSQDHAGVSREGVQRDIL 295 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+V TKYG + TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF Sbjct: 296 PIVEGSTVVTKYGPVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNSLTEEDFVK 355 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ LI QY L+++E I + FT ++I+ +A +A ++N DIGARRL T+MERV Sbjct: 356 ILTEPSQALIKQYTALLESEEITVRFTHEAIEEIAKIATHVNRETDDIGARRLYTIMERV 415 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+SF A+D+ + TV I YV+ +G + D+ +IL Sbjct: 416 LEDLSFEAADMPQTTVEITPAYVQAKVGSIADDRDLSQYIL 456 >gi|169830788|ref|YP_001716770.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Desulforudis audaxviator MP104C] gi|169637632|gb|ACA59138.1| heat shock protein HslVU, ATPase subunit HslU [Candidatus Desulforudis audaxviator MP104C] Length = 464 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/466 (47%), Positives = 317/466 (68%), Gaps = 35/466 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +PR+IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP DLR+E+MPKNIL++GPTGV Sbjct: 1 MELTPRQIVAELDKYIVGQEEAKRAVAVALRNRYRRARLPEDLREEVMPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARL APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +VR R +EV Sbjct: 61 GKTEIARRLARLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVRSERLNEVEA 120 Query: 125 QASINAEERILDALVG----KTATSNT----------------------------REVFR 152 +A+ AEERI++ L +T N RE R Sbjct: 121 RAARLAEERIIELLAPFPQQETGGRNPLEMLLGTVRPDPEIDDRHKQRLRRVEFERETLR 180 Query: 153 KKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 KL GE+ ++ ++IEV D +S + F G +GI NL+++ + +KK+ +++ Sbjct: 181 TKLERGELENEYLEIEVEDRPTSTLELFSGQGVEEMGI-NLNDVLGHIF-PKKKKRRKVT 238 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V + L + E+ +L+D + V + I+ E GI+FLDE DKI R++G G VSR GV Sbjct: 239 VAEARKILTQQEAQKLVDNEEVVTEGIRRAEESGIIFLDEIDKIAGREAGAGPDVSRGGV 298 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP++EGS+V TKYG + TDH+LFIA+GAFH+SRP+DL+PE+QGRFP+RV LK+L + Sbjct: 299 QRDILPIIEGSTVVTKYGPVRTDHMLFIAAGAFHMSRPSDLIPELQGRFPIRVELKNLTE 358 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QY L+ TEGI L+F++ S+ +A +A +N +IGARRL T Sbjct: 359 EDFLQILTEPQNALIKQYTALLATEGIKLEFSKYSLVEIAKIAYTVNDQTENIGARRLHT 418 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+ER+LE+ISF+A D+++K VVID +YVR + + D+ +IL Sbjct: 419 VLERLLEEISFAAPDIEDKHVVIDEQYVREKLSEIVRREDLSRYIL 464 >gi|33599169|ref|NP_886729.1| ATP-dependent protease ATP-binding subunit [Bordetella bronchiseptica RB50] gi|62286868|sp|Q7WQZ4|HSLU_BORBR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|33575215|emb|CAE30678.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella bronchiseptica RB50] Length = 444 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIVSELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 HMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + ++ R+ FRK+LR+G+I D EI+IE+A Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ + +KK ++ V++ + ++ +E+ + ++ D + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+ DF IL++T+++LI QY L+ T Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVNILSETDASLIKQYTALLGT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FT+D I LA++A ++N +IGARRL TVME++LE++SF AS + + ID Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV L + + D+ ++L Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444 >gi|187476657|ref|YP_784680.1| ATP-dependent protease ATP-binding subunit HslU [Bordetella avium 197N] gi|123515068|sp|Q2L1D0|HSLU_BORA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|115421243|emb|CAJ47748.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella avium 197N] Length = 444 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 219/442 (49%), Positives = 300/442 (67%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD+YIIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 TMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSH 124 Query: 126 ASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILD LV + TR+ FRK+LR+G + D EI+I++A + Sbjct: 125 AEDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ + + K ++ V++ + ++ +E+ + ++ D + Sbjct: 185 LDVMTPPGMEEMA-EQLRGMFAG-LARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRA 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH+SRP+DL+PE+QGRFP+RV L SL+ DF IL++T+++L+ QY L+ T Sbjct: 303 ILFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLAT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L FTED I LA++A ++N +IGARRL TVME++LE++SF A ++V ID Sbjct: 363 EDVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV + + S D+ ++L Sbjct: 423 AAYVDAQLSEAASSQDLARYVL 444 >gi|313674923|ref|YP_004052919.1| heat shock protein hslvu, atpase subunit hslu [Marivirga tractuosa DSM 4126] gi|312941621|gb|ADR20811.1| heat shock protein HslVU, ATPase subunit HslU [Marivirga tractuosa DSM 4126] Length = 462 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/458 (47%), Positives = 314/458 (68%), Gaps = 29/458 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV+ELD+YIIGQ DAKR VAIALRNRWRR P D++ E++P NIL++G TGVGK Sbjct: 7 LTPKEIVAELDKYIIGQNDAKRNVAIALRNRWRRMNTPMDIQGEIVPNNILMIGATGVGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ ++N+V+ ++++EV+E+A Sbjct: 67 TEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSVNLVKAAKKEEVKEKA 126 Query: 127 SINAEERILDALVGKTATSN----------------------TREVFRKKLRDGEISDKE 164 S E+ ILDAL+ ++N TRE FR+KLR+GE+ D++ Sbjct: 127 SQAVEDIILDALIPPMKSTNQRPVSTTADNQVPDNDYELNQKTRERFREKLRNGELEDRK 186 Query: 165 IDIEVADTSSDISNFDIPGGA-SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 IDI V +++ G ++NL ++ S +M KK+ ++++++ L+ +E Sbjct: 187 IDINVKTPANNGMGMVGGGMMDEASMINLQDMLSNMMPKKNKKR-KVTIEEARKILIDEE 245 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG 281 +LIDMD V ++I+ EN G++F+DE DKI A+ SGN G VSREGVQRDLLP+VEG Sbjct: 246 VSKLIDMDEVKEEAIKKAENTGMIFIDEIDKI-AKGSGNSSGGDVSREGVQRDLLPIVEG 304 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+V+TKYG I+TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K+DF IL + Sbjct: 305 SAVNTKYGIIHTDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELDSLTKADFLRILKEP 364 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L QY L+K E + L F +D+++ LA++A +NS V +IGARRLQTVM ++L ++ Sbjct: 365 KNALTKQYTALLKAEEVDLQFDDDALEELAEIAYQVNSEVENIGARRLQTVMSKLLNELL 424 Query: 402 FSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F D VVI + V + + D+ +IL Sbjct: 425 FDIPDKIGPNAKVVITKQMVGEKLDGLVKDKDLSQYIL 462 >gi|33594894|ref|NP_882537.1| ATP-dependent protease ATP-binding subunit [Bordetella parapertussis 12822] gi|62286866|sp|Q7W216|HSLU_BORPA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|33564970|emb|CAE39917.1| ATP-dependent Hsl protease ATP-binding subunit [Bordetella parapertussis] Length = 444 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 219/442 (49%), Positives = 305/442 (69%), Gaps = 12/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIV+ELD++IIGQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 5 HMTPDEIVAELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ IIRDL + +I RE VR Sbjct: 65 KTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSH 124 Query: 126 ASINAEERILDALVG----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 A AE+RILDALV + ++ R+ FRK+LR+G+I D EI+IE+A Sbjct: 125 AEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKRLREGKIDDLEIEIEIAQPMPQ 184 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F+ + +KK ++ V++ + ++ +E+ + ++ D + Sbjct: 185 MDVMTPPGMEEMA-EQLRGMFAG-LARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDLRA 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI AR G VSR+GVQRDLLPLVEG++V+T+YG + TDH Sbjct: 243 AAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH++RP+DL+PE+QGRFP+RV L SL+ DF IL++T+++LI QY L+ T Sbjct: 303 ILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L+FT+D I LA++A ++N +IGARRL TVME++LE++SF AS + + ID Sbjct: 363 EDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDASANSGEVITID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YV L + + D+ ++L Sbjct: 423 AAYVDLQLAETAGSQDLARYVL 444 >gi|325525688|gb|EGD03448.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia sp. TJI49] Length = 447 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/446 (48%), Positives = 320/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKEI++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F ED I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVGLEFAEDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447 >gi|121997994|ref|YP_001002781.1| ATP-dependent protease ATP-binding subunit HslU [Halorhodospira halophila SL1] gi|121589399|gb|ABM61979.1| heat shock protein HslVU, ATPase subunit HslU [Halorhodospira halophila SL1] Length = 442 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/440 (50%), Positives = 307/440 (69%), Gaps = 10/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD++I+GQ +AKRAVAIALRNRWRR Q+ LR E+ PKNIL++GPTGVG Sbjct: 5 TMTPREIVQELDKHIVGQGEAKRAVAIALRNRWRRMQVDEPLRSEITPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIK+E TKFTE+GYVGR+VE IIRDL D+A+ +VRE + +R + Sbjct: 65 KTEIARRLARLARAPFIKIEATKFTEVGYVGRDVESIIRDLTDLALKLVREEAMEAMRHK 124 Query: 126 ASINAEERILDALV------GKTATSN-TREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A E+R+LD L+ G N TRE FR+KLR+GE+ D+EI++EV + + Sbjct: 125 ADRAVEDRLLDTLLPGPSGGGPEDVENRTREKFRQKLRNGELDDREIEVEVQASGPGVDI 184 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 PG + L LF + MG R ++ +++V + L +E+ +L++ + V +++ Sbjct: 185 MAPPGMEEMSN-QLQGLF-RNMGQERTQRRKLTVAEAKRVLRDEEAAKLVNEEEVKAEAV 242 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 Q VE GIVFLDE DK+ R +G G VSREGVQRDLLPLVEG++VSTK+G + TDHIL Sbjct: 243 QRVEEQGIVFLDEVDKVTKRAEQSGGGDVSREGVQRDLLPLVEGATVSTKHGMVRTDHIL 302 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFHV++P+DL+PE+QGR P+RV L +L +F ILT+ S+L+ QY+ LM EG Sbjct: 303 FIASGAFHVAKPSDLIPELQGRLPIRVELDALGTEEFVRILTEPSSSLVAQYQALMAAEG 362 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L+FT+D + +A++A +N +IGARRL TVMER+LE +S+ A+D +T +DA Sbjct: 363 LTLEFTDDGVRRIAEIARQVNERTENIGARRLHTVMERLLEQLSYEAADHGGQTRTVDAA 422 Query: 418 YVRLHIGDFPSETDMYHFIL 437 YV H+ + D+ +IL Sbjct: 423 YVDEHLAGLAEDEDLSRYIL 442 >gi|312126814|ref|YP_003991688.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor hydrothermalis 108] gi|311776833|gb|ADQ06319.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor hydrothermalis 108] Length = 465 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/468 (47%), Positives = 318/468 (67%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 2 MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E Sbjct: 62 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121 Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 181 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK I++EV DT F++ G + +S F V GS +KKK +M Sbjct: 182 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V +++IQ E +GI+F+DE DKI + S G VSREG Sbjct: 238 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 298 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL Sbjct: 358 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 417 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 418 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 465 >gi|78067911|ref|YP_370680.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383] gi|123769933|sp|Q39BY0|HSLU_BURS3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|77968656|gb|ABB10036.1| Heat shock protein HslU [Burkholderia sp. 383] Length = 447 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 215/446 (48%), Positives = 322/446 (72%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDIEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S+ + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447 >gi|222530144|ref|YP_002574026.1| ATP-dependent protease ATP-binding subunit HslU [Caldicellulosiruptor bescii DSM 6725] gi|222456991|gb|ACM61253.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor bescii DSM 6725] Length = 464 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/468 (47%), Positives = 319/468 (68%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 1 MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ ++++E Sbjct: 61 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKE 120 Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK I++EV DT F++ G + +S F V+GS +KKK +M Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVIGSLFPKKKKKKKM 236 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V +++IQ E +GI+F+DE DKI + S G VSREG Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL Sbjct: 357 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464 >gi|332703813|ref|ZP_08423901.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio africanus str. Walvis Bay] gi|332553962|gb|EGJ51006.1| ATP-dependent hsl protease ATP-binding subunit hslU [Desulfovibrio africanus str. Walvis Bay] Length = 464 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 224/451 (49%), Positives = 306/451 (67%), Gaps = 21/451 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELDRYI+ Q+DAKR VAIA+RNRWRRQQL LRDE+ PKNI+++GPTGVG Sbjct: 16 NLTPREIVSELDRYIVSQKDAKRMVAIAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 75 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LAG+PF KVE TKFTE+GYVGR+VE +IR+L+D+ +++V+E VR Q Sbjct: 76 KTEIARRLAKLAGSPFHKVEATKFTEVGYVGRDVESMIRELMDIGVSLVKEEELARVRVQ 135 Query: 126 ASINAEER--------------ILDALVGKTATSN---TREVFRKKLRDGEISDKEIDIE 168 A AEE A G+TA ++ TRE R R G++ ++E++++ Sbjct: 136 AEKRAEEALLDLLLPGPSQQGVFAAAPGGETAGADKDSTREKLRTLWRQGQLDEREVEMQ 195 Query: 169 V-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 V A T I IPG +G ++FSKV S +KK ++ ++ + L+++ESD+L Sbjct: 196 VTAKTGPQIEVMSIPGMEEMGS-QFRDMFSKVFPS-KKKTRKIKIKDAHGLLVQEESDKL 253 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVST 286 +DMD V + + VE GI+F+DE DKI D+ G VSREGVQRDLLP+VEGS+V+T Sbjct: 254 VDMDKVVEQAKERVEQTGILFIDEIDKICGSDARRGGPDVSREGVQRDLLPVVEGSTVNT 313 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LK L + +F ILT+ + L Sbjct: 314 KYGMVKTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELKDLGQEEFYRILTEPANALT 373 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY L+ TE I L F +D++ +A A +N +IGARRL T+MER+L D+SF A D Sbjct: 374 KQYSALLSTEDIELSFGDDALREIAAFAEQINQETENIGARRLYTIMERILSDLSFEAPD 433 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + V +D YVR H+ D + D+ +IL Sbjct: 434 RPGQKVAVDRVYVREHLKDVQQDHDLSRYIL 464 >gi|308068648|ref|YP_003870253.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus polymyxa E681] gi|305857927|gb|ADM69715.1| ATP-dependent hsl protease ATP-binding subunit hslU [Paenibacillus polymyxa E681] Length = 466 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/464 (45%), Positives = 321/464 (69%), Gaps = 34/464 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR++VSELD+YI+GQ++AK++VA+ALRNR+RR +LP D+RDE++PKNIL++GPTGVG Sbjct: 5 SLTPRQVVSELDKYIVGQKEAKKSVAVALRNRYRRSKLPDDIRDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL GAPF+KVE TKFTE+GYVGR+VE ++RDL++ +I IV+ R + V+++ Sbjct: 65 KTEIARRLARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLMETSIRIVKTERTENVKDK 124 Query: 126 ASINAEERILDALV-GKTATSNTREVF--------------------------RKKLR-- 156 A A ERI+ LV + + + R F R+K++ Sbjct: 125 AEDMANERIVSILVPAEKSNKSQRNPFEMLFGNNTGASVEEEPPQQDGSLAEKRRKVKFD 184 Query: 157 --DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 G++ D I+I+V DT+ ++ + F G +G +N+ E+F + R KK ++ V+ Sbjct: 185 LLSGKLEDDVIEIDVEDTAPNMLDMFAGQGNEQMG-MNMQEMFGSFL-PKRTKKRKLPVK 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L++DE+ +LIDMD V ++S++ E GI+F+DE DKI ++ G+G VSREGVQR Sbjct: 243 EARKVLIQDEAAKLIDMDDVIQESVKRAEQSGIIFIDEIDKIASQGKGSGPDVSREGVQR 302 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS++ TKYG + TD+ILFIA+GAFHV++P+DL+PE+QGRFP+RV L SL + Sbjct: 303 DILPIVEGSTIMTKYGPVRTDYILFIAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLDE 362 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ ++ L QY +L++TE I ++F+ ++I +A +A ++N +IGARRL T++ Sbjct: 363 FVSILTEPKNALTKQYTDLLRTEEIEVEFSAEAIREIASIAESVNRNTENIGARRLHTIL 422 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LED+SF A +L ++I EYVR +GD D+ +IL Sbjct: 423 EKLLEDLSFEAPELTLDRMIITPEYVREKLGDIAQNRDLSQYIL 466 >gi|74318560|ref|YP_316300.1| ATP-dependent protease ATP-binding subunit HslU [Thiobacillus denitrificans ATCC 25259] gi|74058055|gb|AAZ98495.1| Heat shock protein HslU [Thiobacillus denitrificans ATCC 25259] Length = 438 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/441 (50%), Positives = 306/441 (69%), Gaps = 13/441 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD++I+GQ AKRAVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARLA APFIK+E TKFTE+GYVGR+V+ I+RDL++ A+ +RE +VR +A Sbjct: 61 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETAVKQMREQATAKVRFRA 120 Query: 127 SINAEERILDALV------GKTATSNT----REVFRKKLRDGEISDKEIDIEVADTSSDI 176 AEERILDAL+ G+T + R+ FRK LR+G++ DKEI+IEVA + + Sbjct: 121 EEGAEERILDALLPPSRGFGETEPPRSDGAARQRFRKMLREGQLDDKEIEIEVAAVTPSM 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 F PG + L +F +G RK+ ++ V++ + +E+ RLI+ + + Sbjct: 181 EIFAPPGMEDLS-QQLQGMFQN-LGQSRKQMRKLKVREAVKLVTEEEATRLINDEETKQQ 238 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +++ VE GIVFLDE DKI R +G VSR+GVQRDLLPL+EG++VSTKYG + TDHI Sbjct: 239 ALEAVEQNGIVFLDEIDKIATRSDAHGSDVSRQGVQRDLLPLIEGTTVSTKYGMVKTDHI 298 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH+S+P+DL+PE+QGR P+RV L++L+ DF ILT T++ L QY+ L+ TE Sbjct: 299 LFIASGAFHLSKPSDLIPELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATE 358 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L FTE I +A++A +N +IGARRL TVME++LEDISF A + + VIDA Sbjct: 359 GVALRFTEGGIRRIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGSVTGEH-VIDA 417 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 E V + + D+ ++L Sbjct: 418 EAVSSRLAALAAREDLARYVL 438 >gi|146296275|ref|YP_001180046.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166221472|sp|A4XIX0|HSLU_CALS8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|145409851|gb|ABP66855.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 465 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 224/466 (48%), Positives = 317/466 (68%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD+YI+GQ+ AKR VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVGK Sbjct: 4 LTPQEIVRELDKYIVGQERAKRCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ ++++E+A Sbjct: 64 TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMEKMKERA 123 Query: 127 SINAEERILDALVG-----KTATSNT--------------------------REVFRKKL 155 E+RIL+ L+ K N RE+ R+KL Sbjct: 124 KALVEDRILEILIPEPHARKAGFKNPFEALFGAPSQEPEQTYQTTDDYIRTQREILREKL 183 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSV 212 R GE+ DK I++EV DT F++ G + +S F V GS +KKK +M++ Sbjct: 184 RSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKMTI 239 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L ++E ++LIDMD V +++I E +GI+F+DE DKI R SG G VSREGVQ Sbjct: 240 REAREVLEQEEYNKLIDMDEVIKEAIHRAEQHGIIFIDEIDKIAGRGSGVGPDVSREGVQ 299 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L + Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELHPLTEE 359 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF+ ILT ++ + QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL TV Sbjct: 360 DFKKILTQPKNAITKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTV 419 Query: 393 MERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 +E+++EDISF +++++ VVID +YV + D + D+ FI+ Sbjct: 420 VEKIMEDISFEYANVEKPIDVVIDKDYVYSKVSDMIKDKDLNRFII 465 >gi|332799168|ref|YP_004460667.1| ATP-dependent hsl protease ATP-binding subunit hslU [Tepidanaerobacter sp. Re1] gi|332696903|gb|AEE91360.1| ATP-dependent hsl protease ATP-binding subunit hslU [Tepidanaerobacter sp. Re1] Length = 465 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/467 (45%), Positives = 318/467 (68%), Gaps = 39/467 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++I+ EL++YI+GQ+DAK++VAIALRNR+RRQ L +++DE++PKNIL++GPTGVG Sbjct: 3 NLTPKKIIEELNKYIVGQEDAKKSVAIALRNRYRRQMLSDEIKDEVIPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+ + + V+++ Sbjct: 63 KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKTEKIEAVKDK 122 Query: 126 ASINAEERILDALVG----------------------------------KTATSNTREVF 151 A+ A ++I L KTA N +E+ Sbjct: 123 AAELANQKIAAILCPIPTKTVSVNPFETIFGSSKQNYSTDNEEMYTQKVKTARENQKEIL 182 Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 +K+++G + + ++IE+ D S F G +GI N ++F + RKKK + Sbjct: 183 -EKVKNGSLDKELVEIEIEDNLPSMFEIFSASGMEEIGI-NFQDMFEGLFPK-RKKKCTV 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +++ L ++E+ +LIDMD V +SI+ E+ GI+F+DE DKI ++S G VSREG Sbjct: 240 TIENARRILTQEEAQKLIDMDEVINESIRKAEDSGIIFIDEIDKIAGKES-YGQDVSREG 298 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP++EGS+V TKYG I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL Sbjct: 299 VQRDILPIIEGSTVVTKYGPIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLT 358 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + D + ILT+ +++LI QY L++TEGI + F+ED+ID + VAV++N +IGARRL Sbjct: 359 EEDLKKILTEPKNSLIKQYTALLETEGIKISFSEDAIDEIVKVAVHVNHESENIGARRLH 418 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LEDISF+A DL + ++ID +YV + + + D+ +IL Sbjct: 419 TIMEKLLEDISFNAPDLLQSQIIIDRDYVNQKLKNIVKDKDLSMYIL 465 >gi|304436892|ref|ZP_07396856.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370091|gb|EFM23752.1| ATP-dependent hsl protease ATP-binding subunit HslU [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 465 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/458 (48%), Positives = 310/458 (67%), Gaps = 30/458 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT Sbjct: 10 TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A Sbjct: 70 EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129 Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161 NAEER++D V S RE RK+LR GE+ Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQEDEPEEKKEEPPKYQAGREWMRKRLRSGELE 189 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 + I++EV +++ + N G + G+ NL + K++ R K+ +++V + Sbjct: 190 NDVIEVEVEESARPMGNM-FAGSSLEGMSDNLQSMIGKLVPKNRHKR-KVTVAQARKIFA 247 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279 +E+D+L+DMD V ++++ E GIVFLDE DK+ V+ G +SREGVQRD+LP+V Sbjct: 248 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIV 307 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF ILT Sbjct: 308 EGSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILT 367 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + + LI QY L+ EG+ L F +D++ LA +A +N DIGARRL T++E++LE+ Sbjct: 368 EPRNALIKQYSALLGVEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEE 427 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF A DL EK VVIDA YV + D + D+ FIL Sbjct: 428 LSFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465 >gi|311030136|ref|ZP_07708226.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus sp. m3-13] Length = 466 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/469 (44%), Positives = 319/469 (68%), Gaps = 37/469 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +PR+IV LD+YI+GQ +AK+AVA+ALRNR+RR L +LRDE++PKNIL++GPT Sbjct: 1 MSTKLTPRQIVDMLDQYIVGQTNAKKAVAVALRNRYRRSLLKGNLRDEVVPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + V Sbjct: 61 GVGKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMASV 120 Query: 123 REQASINAEERILDALV------------------GKTATSNTREVFRK----------- 153 +E+A NA +R+++ LV G T +++T E ++ Sbjct: 121 KEKALENANKRLVELLVPGKQKSASYKNPLEMFFGGNTNSNDTEEQEKQEEVSIKDQRRR 180 Query: 154 ---KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKI 208 +L GE+ D+ + +EV + S FD+ G+ + + N+ + S +M +KKK Sbjct: 181 MAHQLALGELEDRYVTVEVEEQQG--SMFDMLQGSGMEQMGMNMQDALSNLMPK-KKKKR 237 Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 R++V++ P L +E+ +LIDMD V ++++ E GI+F+DE DKI ++SG+ VSR Sbjct: 238 RLTVREARPVLAHEEAQKLIDMDEVTQEAVNRAEQNGIIFIDEIDKIAKKNSGSSADVSR 297 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS+V TKYG + TDH+LFI++GAFH+++P+DL+PE+QGRFP+RV L Sbjct: 298 EGVQRDILPIVEGSTVVTKYGQVKTDHVLFISAGAFHIAKPSDLIPELQGRFPIRVELTK 357 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L+ DF IL + ++ L+ QY L++TEGI ++F++D+I LA+VA +N +IGARR Sbjct: 358 LSIDDFVRILVEPDNALLKQYTALLETEGIKVEFSDDAIRKLAEVAFQVNQDTDNIGARR 417 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LED+SF A D+ + +VI +YV +G+ D+ FIL Sbjct: 418 LHTILEKLLEDLSFEAPDINLEKIVITPKYVDEKLGNIVKNKDLSQFIL 466 >gi|238926944|ref|ZP_04658704.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] gi|238885178|gb|EEQ48816.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] Length = 465 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 219/458 (47%), Positives = 310/458 (67%), Gaps = 30/458 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREIV+ELD+YI+GQ +AKR+VAIALRNRWR +QL AD+R++++PKNIL++G TGVGKT Sbjct: 10 TPREIVAELDKYIVGQHEAKRSVAIALRNRWRSRQLDADMREDIIPKNILMIGSTGVGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLARL APF+KVE TKFTE+GYVGR+VE I+RDLV+ ++ +VR+ + +EV ++A Sbjct: 70 EIARRLARLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVETSVRMVRQQKIEEVEDKAK 129 Query: 128 INAEERILDALVGKTATSNT--------------------------REVFRKKLRDGEIS 161 NAEER++D V S RE RK+LR GE+ Sbjct: 130 ENAEERLIDVFVPPPKKSTNPLGSLFSSQADEPEGKKEEPPKYQAGREWMRKRLRSGELE 189 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGIL-NLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 + I++EV +++ + N G + G+ NL + K++ R+K+ +++V + Sbjct: 190 NDVIEVEVEESARPMGNM-FAGSSLEGMSDNLQSMIGKLVPKNRRKR-KVTVAQARKIFA 247 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279 +E+D+L+DMD V ++++ E GIVFLDE DK+ V+ G +SREGVQRD+LP+V Sbjct: 248 AEEADKLVDMDVVAEEAVRAAEYSGIVFLDEIDKVAVSNGRSAGADISREGVQRDILPIV 307 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGRFP+RV LKSL K DF IL Sbjct: 308 EGSTVVTKYGPVKTDHVLFIAAGAFHTAKPSDLIPELQGRFPIRVELKSLVKEDFERILI 367 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + + LI QY L+ EG+ L F +D++ LA +A +N DIGARRL T++E++LE+ Sbjct: 368 EPRNALIKQYSALLGAEGVSLRFADDAVSRLAQLAETVNEQTEDIGARRLYTLLEKLLEE 427 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF A DL EK VVIDA YV + D + D+ FIL Sbjct: 428 LSFDAPDLTEKEVVIDAAYVDRCLADIAGDHDVSRFIL 465 >gi|312621563|ref|YP_004023176.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor kronotskyensis 2002] gi|312202030|gb|ADQ45357.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor kronotskyensis 2002] Length = 464 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 223/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 1 MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E Sbjct: 61 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120 Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 121 RAKALVEDRILEILIPEPQARKAGFKNPFEALFGATSQEMEQSYQTTDDYIRTQREILRE 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK I++EV DT F++ G + +S F V GS +KKK +M Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 236 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V +++IQ E +GI+F+DE DKI + S G VSREG Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL Sbjct: 357 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464 >gi|89098650|ref|ZP_01171532.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL B-14911] gi|89086612|gb|EAR65731.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL B-14911] Length = 468 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 214/471 (45%), Positives = 314/471 (66%), Gaps = 37/471 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M L+ N +PR+IV LD+YIIGQ+DAK+AVA+ALRNR+RR L +RDE+ PKNIL++G Sbjct: 1 MSLSTNLTPRQIVERLDQYIIGQKDAKKAVAVALRNRYRRGLLEEAIRDEISPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + Sbjct: 61 PTGVGKTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMQ 120 Query: 121 EVREQASINAEERILDALV--GKTATS-----------------------------NTRE 149 V+E+A NA RI+D LV GK A S R+ Sbjct: 121 SVKERAEENANRRIVDMLVPSGKKAASYKNPLEMLFGGGGGQQDQENEPAEDYSLTEKRK 180 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKK 207 + R+KL GE+ ++ I +EV + S FD+ G+ + +N+ + S +M RKK+ Sbjct: 181 IAREKLAMGELENELITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLMPKKRKKR 238 Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGV 266 +++V++ L +E+ +LIDMD V ++++ E GI+F+DE DKI ++ S G+ V Sbjct: 239 -KLTVREARKVLSNEEAQKLIDMDEVTQEAVFRAEQSGIIFIDEIDKIASKSSGGSNADV 297 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SREGVQRD+LP+VEGS+V TKYGS+ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L Sbjct: 298 SREGVQRDILPIVEGSTVVTKYGSVKTDHVLFMAAGAFHIAKPSDLIPELQGRFPIRVEL 357 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L DF IL + ++ L QY L++TEGI ++F++D+I +A+VA +N +IGA Sbjct: 358 TKLTVEDFYKILVEPDNALTKQYTALLETEGIQIEFSDDAIRRIAEVAYEVNQNTDNIGA 417 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL T++E++LED+SF A ++ V I +YV +G D+ FIL Sbjct: 418 RRLHTILEKLLEDLSFEAPEISMGKVTITPQYVEEKLGAISRNKDLSQFIL 468 >gi|189349030|ref|YP_001944658.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia multivorans ATCC 17616] gi|189333052|dbj|BAG42122.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Burkholderia multivorans ATCC 17616] Length = 444 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/446 (48%), Positives = 321/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++ RES +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 120 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKEI++++ Sbjct: 121 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 181 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++++TKYG + Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY+ Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 359 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 419 VTIDAKYVDRALGEVSQDEDLSRYVL 444 >gi|161526256|ref|YP_001581268.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia multivorans ATCC 17616] gi|221201905|ref|ZP_03574942.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD2M] gi|221207589|ref|ZP_03580597.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD2] gi|221215814|ref|ZP_03588773.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD1] gi|160343685|gb|ABX16771.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans ATCC 17616] gi|221164350|gb|EED96837.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD1] gi|221172435|gb|EEE04874.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD2] gi|221178325|gb|EEE10735.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia multivorans CGD2M] Length = 447 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/446 (48%), Positives = 321/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDLV++++ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLVEISVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKEI++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEIELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++++TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTINTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVELEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447 >gi|186474840|ref|YP_001856310.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia phymatum STM815] gi|238691321|sp|B2JJX7|HSLU_BURP8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|184191299|gb|ACC69264.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia phymatum STM815] Length = 447 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/449 (48%), Positives = 311/449 (69%), Gaps = 21/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQNRAKKAVAVALRNRWRRQQVDEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ ++R + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKMRTK 122 Query: 126 ASINAEERILDALVGKTAT---------------SNTREVFRKKLRDGEISDKEI--DIE 168 A AE+RILD L+ T + TR+ FRK+LR+G + DKEI DIE Sbjct: 123 AEDLAEDRILDILLPGARTVGFGSGTSEASGDESNTTRQTFRKRLREGALDDKEIELDIE 182 Query: 169 VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 + + DI P G + +F+ +G G+K + ++ V++ L +E+ +++ Sbjct: 183 MQAPAMDIMG---PPGMEDMTEQIRSMFAN-LGGGKKTRRKVKVKEALKLLTDEEASKML 238 Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + + V ++Q VE GIVFLDE DKI +R G VSR+GVQRDLLPLVEG++++TKY Sbjct: 239 NDEEVKTKAVQNVEQNGIVFLDEIDKIASRSEAGGGEVSRQGVQRDLLPLVEGTTINTKY 298 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ Q Sbjct: 299 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFESILVATDASLVKQ 358 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L+ TE + L+F +D I LA++A ++N +IGARRL TV+E++LE++SFSA + Sbjct: 359 YQALLATEDVHLEFADDGIRRLAEIAFSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHT 418 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K+V+IDA YV + D + D+ ++L Sbjct: 419 GKSVLIDAAYVDRALNDVAQDEDLSRYVL 447 >gi|312876490|ref|ZP_07736473.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor lactoaceticus 6A] gi|311796701|gb|EFR13047.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor lactoaceticus 6A] Length = 465 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/466 (47%), Positives = 317/466 (68%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV ELD+YI+GQ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGVGK Sbjct: 4 LTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E+A Sbjct: 64 TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKERA 123 Query: 127 SINAEERILD------------------ALVGKTATS-------------NTREVFRKKL 155 E+RIL+ AL G T+ RE+ R+KL Sbjct: 124 KALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILREKL 183 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSV 212 R GE+ DK I++EV DT F++ G + +S F V GS +KKK +M++ Sbjct: 184 RSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKMTI 239 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L ++E ++LIDMD V +++IQ E +GI+F+DE DKI + S G VSREGVQ Sbjct: 240 KEAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREGVQ 299 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L + Sbjct: 300 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLTEE 359 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL TV Sbjct: 360 DFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLHTV 419 Query: 393 MERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 +E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 420 VEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465 >gi|297617133|ref|YP_003702292.1| heat shock protein HslVU, ATPase HslU [Syntrophothermus lipocalidus DSM 12680] gi|297144970|gb|ADI01727.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophothermus lipocalidus DSM 12680] Length = 467 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/469 (47%), Positives = 320/469 (68%), Gaps = 41/469 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR IV ELDRYI+GQ+ AK+AVAIALRNR+RR++LPA++ +E+ PKNI+++GPTGVG Sbjct: 3 NLTPRAIVEELDRYIVGQEAAKKAVAIALRNRYRRKKLPAEIGEEIYPKNIIMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE TKFTE+GYVGR+V+ +IRDLV+ ++ ++++ + EV + Sbjct: 63 KTEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVDSMIRDLVETSVQMIKKEKMAEVENK 122 Query: 126 ASINAEERILDA------------------LVGKTATSN----------------TREVF 151 A AEERI+D L+G+T++ RE+ Sbjct: 123 ARKLAEERIVDYMLPLPKKRGSQVVNPLEFLLGRTSSETDNQDSDIGPGYEDIRRRREIL 182 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKI 208 K+ E+ D+ I+IEV + +S F++ GA V GI NL ++ + +KK+ Sbjct: 183 STKIARMELEDELIEIEVEEKP--VSFFEVFSGAGVEEMGI-NLQDMLGSLAPKSKKKR- 238 Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 +++V + L +ES +LIDMD V R+++ EN GI+FLDE DKI R++G+G VSR Sbjct: 239 KVTVAEARRILTNEESQKLIDMDEVQREAVYRAENSGIIFLDEIDKIAGRETGHGPDVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 GVQRD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L S Sbjct: 299 GGVQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHITKPSDLIPELQGRFPIRVELTS 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DFR ILT+ +++LI QY L+ TEG+ + FT ++ID +A V+ +N++ +IGARR Sbjct: 359 LTVEDFRRILTEPDNSLIKQYVALLSTEGVDISFTPEAIDYIAQVSYEVNASTENIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E+VLED+ F AS++ +TVVID YV +G + D+ +IL Sbjct: 419 LHTILEKVLEDLLFEASEMAGQTVVIDKAYVEARLGPIIKDEDLSRYIL 467 >gi|312792642|ref|YP_004025565.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179782|gb|ADQ39952.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor kristjanssonii 177R1B] Length = 465 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 2 MELTPQEIVRELDKYIVGQDRAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E Sbjct: 62 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 121 Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 122 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEPEQSYQTTDDYIRTQREILRE 181 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK I++EV DT F++ G + +S F V GS +KKK +M Sbjct: 182 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V +++IQ E +GI+F+DE DKI + S G VSREG Sbjct: 238 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 298 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL Sbjct: 358 EEDFKKILTQPKNAIIKQYIELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 417 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 418 TVVEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 465 >gi|304404239|ref|ZP_07385901.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus curdlanolyticus YK9] gi|304347217|gb|EFM13049.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus curdlanolyticus YK9] Length = 465 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/463 (45%), Positives = 311/463 (67%), Gaps = 33/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV+ELD+YIIGQ+ AKR+VAIALRNR+RR +L +LRDE++PKNIL++GPTGVG Sbjct: 5 SMTPRQIVAELDKYIIGQKQAKRSVAIALRNRYRRSRLSEELRDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV+ R + V+++ Sbjct: 65 KTEIARRLAKLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKAERTERVKDR 124 Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155 A + A ERI+ LV S T R+ ++KL Sbjct: 125 AEVLANERIVALLVPSATKSKTQKNPFEMLFGGQQGKESEPEPEYDSSVSEQRKAAKEKL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI-LNLSELFSKVMGSGRKKKIRMSVQK 214 G + ++ I+IEV D + ++ + + G G+ N+ +L + M R KK ++ +++ Sbjct: 185 AAGLLENEMIEIEVEDNTPNMMDM-LSGQPGEGMGANMQDLLGQFMPK-RTKKRKLKIKE 242 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L+++E+ +LIDMD V +S+ E GI+F+DE DKI + G+G VSREGVQRD Sbjct: 243 ARKALIQEEATKLIDMDDVITESVLRAEQSGIIFIDEIDKIASPSRGSGPDVSREGVQRD 302 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TD++LF+A+GAFHV++P+DL+PE+QGRFP+RV L SL+ DF Sbjct: 303 ILPIVEGSTVMTKYGPVKTDYVLFVAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLEDF 362 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL + ++ L QY L++TEGI +DF++++I LA +A ++N +IGARRL T++E Sbjct: 363 VKILQEPKNALTKQYSALLETEGIAIDFSDEAIRELASIAADVNKNTENIGARRLHTILE 422 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+SF A DL + + I EYV+ + D+ +IL Sbjct: 423 KLLEDLSFEAPDLNLERITITPEYVKEKLSSIAQNRDLSQYIL 465 >gi|302872576|ref|YP_003841212.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor obsidiansis OB47] gi|302575435|gb|ADL43226.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor obsidiansis OB47] Length = 464 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/468 (47%), Positives = 317/468 (67%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 1 MELTPQEIVKELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E Sbjct: 61 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120 Query: 125 QASINAEERILD------------------ALVGKTAT-------------SNTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMDQSYQTTDDYIKTQREILRE 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK I++EV DT F++ G + +S F V GS +KKK +M Sbjct: 181 KLRSGELEDKVIEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDVFGSLFPKKKKKKKM 236 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V +++IQ E GI+F+DE DKI + S G VSREG Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIKEAIQRAEQQGIIFIDEIDKIAGKGSSVGPDVSREG 296 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELNPLT 356 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+++I+A+A VAV +N +IGARRL Sbjct: 357 EEDFKKILTQPKNAIIKQYVELMKTEGVNITFTDNAIEAIAKVAVKINEQSENIGARRLH 416 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 417 TVVEKIMEDISFEYANVEKPVDLVIDKDYVYSKVSDIIKDKDLSRFII 464 >gi|206558901|ref|YP_002229661.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia cenocepacia J2315] gi|238693078|sp|B4E7Z1|HSLU_BURCJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|198034938|emb|CAR50810.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia cenocepacia J2315] Length = 447 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/446 (48%), Positives = 320/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ +DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRYVL 447 >gi|148269541|ref|YP_001244001.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga petrophila RKU-1] gi|166221614|sp|A5IJQ2|HSLU_THEP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|147735085|gb|ABQ46425.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga petrophila RKU-1] Length = 463 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G Sbjct: 1 MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ + Sbjct: 61 PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120 Query: 121 EVREQASINAEERILDALVGKTAT----------------------------SNTREVFR 152 EV QA EERILDALV ++ RE R Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 +KLR GE+ ++EI+IE+ +T S PG +GI ++ +FS ++ +KKK +M V Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKQKKKRKMKV 238 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+ E+++LIDMD V ++++ +N GI+F+DE DKI ++S G VSR+GVQ Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L L + Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + E+ +I QY+ L+ TEG+ L FTED I +A +A LN + +IGARRL TV Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+VLE+ISF A D+ EK VV+DAEYVR + + D+ +IL Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463 >gi|193213901|ref|YP_001995100.1| ATP-dependent protease ATP-binding subunit HslU [Chloroherpeton thalassium ATCC 35110] gi|193087378|gb|ACF12653.1| heat shock protein HslVU, ATPase subunit HslU [Chloroherpeton thalassium ATCC 35110] Length = 501 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 219/461 (47%), Positives = 311/461 (67%), Gaps = 31/461 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IV ELD+YIIGQ++AK++VAIALRNR RRQ++ LRDE+MP NI+++GPTGVGK Sbjct: 42 LTPSQIVKELDKYIIGQREAKKSVAIALRNRLRRQRVEGALRDEIMPNNIIMIGPTGVGK 101 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL+D+A+ +VR + V+E+A Sbjct: 102 TEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLMDLAVGMVRSEQSVVVQEKA 161 Query: 127 SINAEERILDALV----------GKTATSNT-----------------REVFRKKLRDGE 159 AEERILD L+ K ++ T RE R +LR+G+ Sbjct: 162 KQLAEERILDILLPPVKKIPAGFKKQQSAETDADTDEDKTENEINDRSREKMRDRLRNGK 221 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + DK I++EV+ S + P G I + + + RKK+ R+++ + L Sbjct: 222 LDDKTIELEVSSDSQGMMQILGPFGPMEDIGGMMQDIISGLPKKRKKR-RVTISEAKVIL 280 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLP 277 ++E+ +LIDMD V +++ Q VEN GIVF+DE DKI + +GNG VSREGVQRDLLP Sbjct: 281 EQEETQKLIDMDAVVKEATQRVENSGIVFIDEIDKIASSSTGNGRSPDVSREGVQRDLLP 340 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF I Sbjct: 341 IVEGSNVATKYGLVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLQEDDFVKI 400 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT E+ LI QY L+KTE + L+F ED I +A +A +N +V +IGARRL T+M +L Sbjct: 401 LTQPENALIKQYTALLKTENVELEFLEDGIQEIARIAAQVNESVENIGARRLHTIMTTLL 460 Query: 398 EDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++ F+ ++ + +V+D V + D + D+ +IL Sbjct: 461 EELMFNIPENIPDNKIVVDKAMVESRLSDIAKDRDLSRYIL 501 >gi|224826711|ref|ZP_03699811.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum 2002] gi|224600931|gb|EEG07114.1| heat shock protein HslVU, ATPase subunit HslU [Lutiella nitroferrum 2002] Length = 447 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/450 (48%), Positives = 301/450 (66%), Gaps = 23/450 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIV EL+++IIGQ AKRAVAIALRNRWRRQQ+ L+ E+ PKNIL++GPTGVG Sbjct: 3 QMTPPEIVHELNKHIIGQDAAKRAVAIALRNRWRRQQVAEPLKSEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE TKFTE+GYVGR+V+ IIRDL ++AI R++ +R + Sbjct: 63 KTEIARRLARLANAPFIKVEATKFTEVGYVGRDVDTIIRDLTEIAIKDTRDAAIKRLRHR 122 Query: 126 ASINAEERILDALV------------------GKTATSNTREVFRKKLRDGEISDKEIDI 167 A AE+RILD L+ K S TR FRK LR+G++ DKEI+I Sbjct: 123 AEDAAEDRILDVLLPPARQPAGFFAGEEEAPASKPEDSATRLKFRKMLREGKLDDKEIEI 182 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 VA + PG L +F +G+G++K +++V + ++ +E+ +L Sbjct: 183 NVAAPQGKMEILAPPGMEDFSS-QLQTMFQG-LGAGKQKARKLNVAEALKLVIEEEAAKL 240 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 ++ D + ++++Q VE GIVF+DE DK+ +R GNG VSR GVQRDLLPLVEG++V+TK Sbjct: 241 VNEDEIKQEALQNVEQNGIVFIDEIDKVASRIEGNGADVSRAGVQRDLLPLVEGTTVTTK 300 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL DFR ILT+T++ L Sbjct: 301 YGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELTSLTVDDFRQILTNTDACLTR 360 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ L+ TEG+ L F + I +A++A ++N +IGARRL TV+E++LE+ISF D Sbjct: 361 QYEALLATEGVELVFADSGIQRMAEIAWHVNEKTENIGARRLYTVIEKLLEEISF---DT 417 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +DA YV + D+ ++L Sbjct: 418 RTGRFEVDAAYVDSKLDMLSQREDLARYVL 447 >gi|107024023|ref|YP_622350.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia cenocepacia AU 1054] gi|116691110|ref|YP_836733.1| ATP-dependent protease ATP-binding subunit [Burkholderia cenocepacia HI2424] gi|170734442|ref|YP_001766389.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia cenocepacia MC0-3] gi|254246899|ref|ZP_04940220.1| Heat shock protein HslU [Burkholderia cenocepacia PC184] gi|122978617|sp|Q1BSM8|HSLU_BURCA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221465|sp|A0KBG3|HSLU_BURCH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|238688620|sp|B1K0G2|HSLU_BURCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|105894212|gb|ABF77377.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia cenocepacia AU 1054] gi|116649199|gb|ABK09840.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia cenocepacia HI2424] gi|124871675|gb|EAY63391.1| Heat shock protein HslU [Burkholderia cenocepacia PC184] gi|169817684|gb|ACA92267.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia cenocepacia MC0-3] Length = 447 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/446 (48%), Positives = 318/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNAEHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA++A +N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVDRALGEVAQDEDLSRYVL 447 >gi|154249091|ref|YP_001409916.1| ATP-dependent protease ATP-binding subunit HslU [Fervidobacterium nodosum Rt17-B1] gi|154153027|gb|ABS60259.1| heat shock protein HslVU, ATPase subunit HslU [Fervidobacterium nodosum Rt17-B1] Length = 458 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/453 (46%), Positives = 305/453 (67%), Gaps = 24/453 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV EL++YIIGQ AK+AVAIA+RNR RRQ+L + R E++PKNILL+GPTGVGK Sbjct: 8 LTPRQIVEELNKYIIGQDKAKKAVAIAIRNRIRRQRLSEEWRKEVVPKNILLIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+++G+PF+KVE TKFTE+GYVG+NV+ +IRDLV++A+N+V++ + EV + Sbjct: 68 TEIARRLAQISGSPFLKVEATKFTEVGYVGKNVDSMIRDLVEIAVNMVKQEKIKEVEPKV 127 Query: 127 SINAEERILDALVGKTATS----------------------NTREVFRKKLRDGEISDKE 164 EERILDALV S R R+KL GEI D E Sbjct: 128 KNLVEERILDALVPVKKQSVPFANIFGFQPAQEQSDDQDVRRKRAELREKLAKGEIEDLE 187 Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 I+I+V I +P +GI + S+ ++ +KK+ RM + + L ES Sbjct: 188 IEIDVEINQPGIGFIGMPDMEDMGI-DFSQFLGNLLPKQKKKR-RMKISEARRVLTPIES 245 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 +++IDMD V + ++ + + GI+F+DE DKI +G VSR+GVQRDLLP+VEG++V Sbjct: 246 EKIIDMDEVIQKALVLAQERGIIFIDELDKIAGGSQAHGPDVSRQGVQRDLLPIVEGTTV 305 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 STKYG + TD+ILFI +GAFH+++P DL+PE+QGRFP+RV L+ L + DF ILT+ E+ Sbjct: 306 STKYGPVKTDYILFIGAGAFHMTKPTDLIPELQGRFPIRVELEPLRQEDFVRILTEPENA 365 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L+ QYK L+ TEGI L+FT+D+ID ++ +A LN + +IGARRL TV+E++LEDI F A Sbjct: 366 LLKQYKALLYTEGIELEFTQDAIDEISKIAYYLNEKMENIGARRLYTVVEKLLEDIMFQA 425 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ ++ID YV + +G+ + ++ +IL Sbjct: 426 PEVDTNKIIIDKNYVTMKLGEIVKDENLSAYIL 458 >gi|254478871|ref|ZP_05092235.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium pacificum DSM 12653] gi|214035184|gb|EEB75894.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydibrachium pacificum DSM 12653] Length = 461 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/462 (45%), Positives = 316/462 (68%), Gaps = 26/462 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR LP D ++E+ PKNIL+VG Sbjct: 1 MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + Sbjct: 61 PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120 Query: 121 EVREQASINAEERILDALVGKTAT-------------------------SNTREVFRKKL 155 V E+A AEER++D L+GK S RE R++L Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R GE+ + ++IEV DT+ + GA + L ++FS ++ +KK +++V + Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDLLPK-KKKLRKVTVAEA 239 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L +E+ LIDMD V ++++ EN GI+F+DE DKI + G VSREGVQRDL Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP++EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF Sbjct: 300 LPIIEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + ++ L QY+EL++TEG+ + +TE++I+ +A+VA +N DIGARRL TVME+ Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ED+SF A +L + +VI A+YV+ + D ++ ++ +IL Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461 >gi|115353190|ref|YP_775029.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia ambifaria AMMD] gi|122321966|sp|Q0BAX8|HSLU_BURCM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|115283178|gb|ABI88695.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria AMMD] Length = 447 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/446 (47%), Positives = 319/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 64 TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRTKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDVLLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S+ + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA++A +N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVEHALGEVSQDEDLSRYVL 447 >gi|297569001|ref|YP_003690345.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio alkaliphilus AHT2] gi|296924916|gb|ADH85726.1| heat shock protein HslVU, ATPase subunit HslU [Desulfurivibrio alkaliphilus AHT2] Length = 506 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/484 (46%), Positives = 317/484 (65%), Gaps = 54/484 (11%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV +LD YIIGQ +AKR+VAIALRNRWRR+Q+P LRDE+ PKNI+++GPTGVG Sbjct: 25 SLTPREIVRQLDDYIIGQGEAKRSVAIALRNRWRRRQVPPPLRDEIAPKNIIMIGPTGVG 84 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL+++AI +VRE R +V+E+ Sbjct: 85 KTEIARRLATLAQSPFLKVEASKFTEVGYVGRDVESMIRDLLELAIGMVREEERKKVQEK 144 Query: 126 ASINAEERILDALV---------------------------GKTATSN------------ 146 A + AEERILD LV G T S+ Sbjct: 145 AGVMAEERILDLLVPPPPPRRPGAAGPGGTPAINLAYTPADGFTKPSHDQSAHDPSAHDP 204 Query: 147 ---------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI--PGGASVGILNLSEL 195 TR+ FR+ LR+G++ ++E++IEV + FD+ GG NL E+ Sbjct: 205 GAATGSGESTRDKFRRMLREGKLDEREVEIEVEQQQA-TPMFDVFAAGGMEEMESNLREM 263 Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255 F K M + K ++ V++ L + E+++LID + V R +I+ E GI+FLDE DKI Sbjct: 264 FGK-MFPRKSHKRKLKVREAREILRQSEAEKLIDHERVLRLAIRRTEQAGIIFLDEIDKI 322 Query: 256 VARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 ++ G+ G VSREGVQRDLLP+VEG++V+TK+G + TDHILFIASGAFHVS+P+DL+ Sbjct: 323 ASKGGGSSQGPEVSREGVQRDLLPIVEGATVTTKHGMVRTDHILFIASGAFHVSKPSDLI 382 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+QGRFP+RV L L + +F ILT+ ++ L+ QY L+ TE I L FT+ +I LA + Sbjct: 383 PELQGRFPIRVELGPLGEEEFYRILTEPQNALLKQYSALLATEDIELTFTDGAIRELARL 442 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433 A +NS +IGARRL T++ER+LE+++F A ++ EK + A+YV+ + + D+ Sbjct: 443 AAEVNSRTENIGARRLHTMLERLLENLAFEAPEMTEKKFEVTADYVQEQLYGVVKDEDLS 502 Query: 434 HFIL 437 FIL Sbjct: 503 RFIL 506 >gi|298530975|ref|ZP_07018376.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira thiodismutans ASO3-1] gi|298508998|gb|EFI32903.1| heat shock protein HslVU, ATPase subunit HslU [Desulfonatronospira thiodismutans ASO3-1] Length = 469 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/472 (45%), Positives = 312/472 (66%), Gaps = 40/472 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +PREIV ELDRYIIGQQDAK VAIALRNRWRRQQL +LR+E+ PKNI+++GPT Sbjct: 1 MSTTLTPREIVHELDRYIIGQQDAKNMVAIALRNRWRRQQLDPELREEIAPKNIIMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RRLA+LAG+PF KVE +KFTE+GYVGR+VE +IRDL+++ +N+VR R++V Sbjct: 61 GVGKTEVARRLAKLAGSPFFKVEASKFTEVGYVGRDVESMIRDLMEIGVNLVRSEEREKV 120 Query: 123 REQASINAEERILDALV-------------------------------------GKTATS 145 + +A NAEER+LD L+ + + Sbjct: 121 QAKAEANAEERLLDLLLPPKKAPEGQQGGQGQQQVAFQLESTGQAGDGYSQDQQSQADEN 180 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 TRE RK RDG ++D+ +++EV S++ +PG + + ++FS+V +K Sbjct: 181 RTREKLRKLWRDGRLNDRTVEVEV-QAGSNVEIMSMPGMEDME-MQFRDMFSRVF-PKKK 237 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 K ++ V+ Y L+++E++RL+DMD V + VE GI+F+DE DK+ A D + Sbjct: 238 KTKKVKVKNAYEILLQEETERLVDMDKVTEIAKDRVEQSGIIFIDEIDKVCASDKSSKAD 297 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSREGVQRDLLP+VEG V+TKYG + +DHILFIA+GAFH ++P+DL+PE+QGRFP+RV Sbjct: 298 VSREGVQRDLLPVVEGCVVNTKYGMVRSDHILFIAAGAFHYAKPSDLVPELQGRFPLRVE 357 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L +L DF ILT+ ++ L QY+ L++TEGI L+F +++ L+ A +N +IG Sbjct: 358 LSALTGEDFYRILTEPQNALTRQYRALLETEGISLEFDNQALEELSSFAQKVNDETENIG 417 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL T+ME++L+D+SF A +L + + +D EYVR + D + D+ +IL Sbjct: 418 ARRLYTIMEKLLQDLSFKAPELAGQKITVDKEYVREQLKDVQEDRDLTRYIL 469 >gi|238028912|ref|YP_002913143.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia glumae BGR1] gi|237878106|gb|ACR30439.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae BGR1] Length = 444 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 219/446 (49%), Positives = 313/446 (70%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDALV--------GKTATSN------TREVFRKKLRDGEISDKEIDIEVADT 172 AE+RILD L+ G A S TR+ FRK+LR+G + DKEI++++ Sbjct: 121 QDQAEDRILDILLPQPRAVGFGSNAESANEDNNATRQTFRKRLREGALDDKEIELDIEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +G G+K + ++ +++ L +E+ +L++ + Sbjct: 181 QAGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKTRRKVKIKEALKLLTDEEAGKLLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++V+TKYG I Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKIASRNHEGGGGEVSRQGVQRDLLPLVEGTTVNTKYGMI 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 299 RTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA+VA ++N +IGARRL TV+E++LED+SF+A + ++ Sbjct: 359 LLATEEVQLEFAADGIRRLAEVAFSVNEKTENIGARRLYTVIEKLLEDVSFAAGNHAGQS 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA YV +G+ + D+ ++L Sbjct: 419 VTIDAGYVDRALGEVSKDEDLSRYVL 444 >gi|171320571|ref|ZP_02909595.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria MEX-5] gi|171094198|gb|EDT39281.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria MEX-5] Length = 447 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++ RES +VR +A Sbjct: 64 TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S+ + PG + + +FS +G G+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SAGVDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA++A +N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA+YV +G+ + D+ ++L Sbjct: 422 VTIDAKYVERALGEVSQDEDLSRYVL 447 >gi|170288216|ref|YP_001738454.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2] gi|238688817|sp|B1L8X3|HSLU_THESQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|170175719|gb|ACB08771.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga sp. RQ2] Length = 463 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 226/465 (48%), Positives = 320/465 (68%), Gaps = 30/465 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G Sbjct: 1 MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ + Sbjct: 61 PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120 Query: 121 EVREQASINAEERILDALVGKTAT----------------------------SNTREVFR 152 EV QA EERILDALV ++ RE R Sbjct: 121 EVERQAEELVEERILDALVPESKAVPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 +KLR GE+ ++EI+IE+ +T S PG +GI ++ +FS ++ +KKK +M V Sbjct: 181 EKLRKGELENEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKQKKKRKMKV 238 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+ E+++LIDMD V ++++ +N GI+F+DE DKI ++S G VSR+GVQ Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L L + Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + E+ +I QY+ L+ TEG+ L FTED I +A +A LN + +IGARRL TV Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+VLE+ISF A D+ EK +V+DAEYVR + + D+ +IL Sbjct: 419 AEKVLEEISFEAPDIPEKRIVVDAEYVRRRLERIVQDEDLSAYIL 463 >gi|229086382|ref|ZP_04218558.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-44] gi|228696898|gb|EEL49707.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-44] Length = 463 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G + +N R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGSQNANQTSETHDDTEIEKKRQEVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 KKL G + D+ + IEVA+ S S FD+ G G+ + F +GS + KK + Sbjct: 181 KKLASGLLEDEVVSIEVAEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ L+ QY L+ TEGI ++F++D+I +A++A +N +IGARRL Sbjct: 356 SVDDFVKILVEPDNALVKQYIALLATEGIEIEFSDDAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|172062041|ref|YP_001809693.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia ambifaria MC40-6] gi|238689143|sp|B1YPR3|HSLU_BURA4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|171994558|gb|ACB65477.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia ambifaria MC40-6] Length = 447 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/446 (47%), Positives = 319/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVGEPLRQEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+K+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 64 TEIARRLAKLADAPFVKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSKA 123 Query: 127 SINAEERILDALV---------GKTATSN-----TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L+ G +N TR+ FRK+LR+G++ DKE+++++ Sbjct: 124 TDQAEDRILDILLPQPRAVGFGGNADHANDDNNATRQTFRKRLREGQLDDKEVELDLEQP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 S+ + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 184 SAGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R++ G+G VSR+GVQRDLLPLVEG++V+TKYG + Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFEAILDATDASLVKQYQA 361 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F D I LA++A ++N +IGARRL TV+E++LE++SFSA + + Sbjct: 362 LLATEDVQLEFAADGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGEC 421 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V IDA YV +G+ + D+ ++L Sbjct: 422 VTIDATYVDRALGEVAQDEDLSRYVL 447 >gi|325290380|ref|YP_004266561.1| ATP-dependent hsl protease ATP-binding subunit hslU [Syntrophobotulus glycolicus DSM 8271] gi|324965781|gb|ADY56560.1| ATP-dependent hsl protease ATP-binding subunit hslU [Syntrophobotulus glycolicus DSM 8271] Length = 460 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 223/463 (48%), Positives = 318/463 (68%), Gaps = 36/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELD++I+GQ++AKRAVA+ALRNR+RR LP ++++++PKNIL++GPTGVG Sbjct: 3 QLTPREIVSELDKHIVGQREAKRAVAVALRNRYRRSLLPEAMQEDVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE TKFTE+GYVGR+VE IIRDL ++A+ +V+ + EV Q Sbjct: 63 KTEIARRLAKLVRAPFIKVEATKFTEVGYVGRDVESIIRDLTEIALRMVKAEKMKEVEVQ 122 Query: 126 ASINAEERILDALV-GKTATSNT----------------------------REVFRKKLR 156 A NAE+R++ LV K S + R++ +KL+ Sbjct: 123 AEKNAEKRLISILVPSKKKESGSLNPFQYLFSQEQEQKEQEQPVTPELEKDRQLIAQKLQ 182 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGI-LNLSELFSKVMGSGRKKKIRMSVQKC 215 GE+ E I + S D+ GGA + + +N+ ++ S + RKK+ R++V++ Sbjct: 183 TGEL---EKHIVEVEVEESSSYADMLGGAGMELGINIQDMMSGMFPKKRKKR-RVTVKEA 238 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L ++E+ LID + +++I+ E GIVF+DE DKI RD G+G VSR GVQRD+ Sbjct: 239 RRILAQEEAQNLIDHEDAVQEAIRRAEQEGIVFIDEIDKIAGRD-GSGPDVSRGGVQRDI 297 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LPLVEGS+V TKYG + TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL+ +DF+ Sbjct: 298 LPLVEGSTVVTKYGPVKTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLSVADFK 357 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT+ +LI Q L++TEGI + F+ED+I+ LA+VA ++NST +IGARRL T++E+ Sbjct: 358 NILTEPHFSLIKQSSALLQTEGINVKFSEDAIEELAEVAYDVNSTTENIGARRLHTIVEK 417 Query: 396 VLEDISFSASDLQEK-TVVIDAEYVRLHIGDFPSETDMYHFIL 437 VLE++SF AS+L E TV I+ +YVR I D D+ +IL Sbjct: 418 VLEELSFEASELPEDYTVTINKDYVRKRINDVVQNQDLSKYIL 460 >gi|110639364|ref|YP_679573.1| ATP-dependent protease ATP-binding subunit HslU [Cytophaga hutchinsonii ATCC 33406] gi|122966584|sp|Q11QT3|HSLU_CYTH3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|110282045|gb|ABG60231.1| ATP-dependent hsl protease, ATP-binding subunit (heat shock protein) [Cytophaga hutchinsonii ATCC 33406] Length = 464 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/459 (46%), Positives = 308/459 (67%), Gaps = 30/459 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIV+ELD+YIIGQ DAKR VAIALRNRWRR AD+R E+MP NILL+GPTGVGK Sbjct: 8 LTPTEIVAELDKYIIGQHDAKRNVAIALRNRWRRMHADADMRKEIMPNNILLIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF KVE +KFTE+GYVGR+VE ++RDLV+ A+N+V+ +++EV+ + Sbjct: 68 TEIARRLAKLADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVKTQKKEEVKIKV 127 Query: 127 SINAEERILDALVG---------KTATSN-----------------TREVFRKKLRDGEI 160 S E+ +LD L+ KTA++ TRE+FR+K+R GE+ Sbjct: 128 SQVVEDILLDLLIPPVKSTGMGFKTASTQSIDTNEIPDNDQELNERTRELFREKIRSGEL 187 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 +++++I V + + ++N+ E+ +M KK+ ++S+ + L+ Sbjct: 188 DERKVEINVQQQGPGVGVVGGAMDEA-SMMNIQEMIGNMMPKKTKKR-KLSIAEARKILL 245 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +ES +LIDMD V ++I+ EN GI+F+DE DK+ + GNG VSREGVQRDLLP+VE Sbjct: 246 EEESAKLIDMDDVKDEAIRKTENMGIIFIDEIDKVASSKKGNGPDVSREGVQRDLLPIVE 305 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V+TKYG+++TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL ++DF IL + Sbjct: 306 GSAVNTKYGTVHTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEADFYHILKE 365 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ L QY+ L+ +E + ++F +D++ A++++A LN V +IGARRL TVM +L ++ Sbjct: 366 PKNALTRQYQALLSSENVNIEFHDDALKAISEIAFELNVEVENIGARRLHTVMSHLLNEL 425 Query: 401 SFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F D E TVVI E V + D+ FIL Sbjct: 426 LFDVPDKIETHSTVVITKELVDQKLKGLVKNRDLSQFIL 464 >gi|15643288|ref|NP_228332.1| ATP-dependent protease ATP-binding subunit HslU [Thermotoga maritima MSB8] gi|281411740|ref|YP_003345819.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga naphthophila RKU-10] gi|11133192|sp|Q9WYZ2|HSLU_THEMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|4981035|gb|AAD35607.1|AE001728_8 heat shock protein HslU [Thermotoga maritima MSB8] gi|281372843|gb|ADA66405.1| heat shock protein HslVU, ATPase subunit HslU [Thermotoga naphthophila RKU-10] Length = 463 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 229/465 (49%), Positives = 319/465 (68%), Gaps = 30/465 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G Sbjct: 1 MKSFDEMTPKEIVQELDKYIVGQYEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ + Sbjct: 61 PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKIK 120 Query: 121 EVREQASINAEERILDALVGKTATSNT----------------------------REVFR 152 EV QA EERILDALV ++ RE R Sbjct: 121 EVERQAEELVEERILDALVPESKAMPVVTNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 +KLR GE+ D+EI+IE+ +T S PG +GI ++ +FS ++ RKKK +M V Sbjct: 181 EKLRKGELEDEEIEIELEETVSPFMGIFGPGMEDLGI-EITNMFSGML-PKRKKKRKMKV 238 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+ E+++LIDMD V ++++ +N GI+F+DE DKI ++S G VSR+GVQ Sbjct: 239 SEARKVLLPLEAEKLIDMDKVVQEALDRAQNRGIIFIDEIDKIAGKESAVGPDVSRQGVQ 298 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG+++ TKYG + TD ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L L + Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDFILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + E+ +I QY+ L+ TEG+ L FTED I +A +A LN + +IGARRL TV Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+VLE+ISF A D+ EK VV+DAEYVR + + D+ +IL Sbjct: 419 AEKVLEEISFEAPDIPEKRVVVDAEYVRRRLEKIVQDEDLSAYIL 463 >gi|307297638|ref|ZP_07577444.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales bacterium mesG1.Ag.4.2] gi|306916898|gb|EFN47280.1| heat shock protein HslVU, ATPase subunit HslU [Thermotogales bacterium mesG1.Ag.4.2] Length = 462 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/459 (45%), Positives = 314/459 (68%), Gaps = 33/459 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ IV ELD+YI+GQ AKRAVA+A+RNR RRQ+LP ++R +++PKNIL++GPTGVGK Sbjct: 9 LTPKRIVEELDKYIVGQDKAKRAVAVAMRNRIRRQKLPEEIRRDVIPKNILMMGPTGVGK 68 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA L G+PF KVE T+FTE+GYVG+NVE IIR+LVDV +N+V++ + EV +A Sbjct: 69 TEIARRLAELTGSPFTKVEATRFTEVGYVGKNVESIIRELVDVGVNMVKQEKMGEVEGKA 128 Query: 127 SINAEERILDALVGKTATS----------------------------NTREVFRKKLRDG 158 S EERIL+ALV T N RE +R +LR G Sbjct: 129 SYQVEERILEALVPGPQTKAAGPRNIIELFQGQQQPKPSQEEAERIRNRREDYRDRLRSG 188 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218 ++ D +I++EV D S + IPG +GI ++S + ++ K++ +M + Sbjct: 189 DLEDLDIEVEVEDHSQQM--IMIPGMEDMGI-DMSGVLGGMVPKKTKRR-KMRIADARKT 244 Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L+ E+++L+DMD V ++I+ V+N G+VF+DE DKI R +G VSREGVQRDLLP+ Sbjct: 245 LLPIEAEKLLDMDKVVAEAIERVQNRGMVFIDEIDKITFRSGSHGPDVSREGVQRDLLPI 304 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 +EG++V+TKYG I TD+ILF+A+GAFH ++P+DL+PE QGRFP+RV L +L++ +F IL Sbjct: 305 IEGTTVTTKYGQIRTDYILFVAAGAFHTAKPSDLIPEFQGRFPIRVELDALSQKEFLRIL 364 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + ++ + QY L++TEG+ + FTED + +A V+ +LN + +IGARRL TV+E+VLE Sbjct: 365 VEPKNAITKQYMALLETEGVKVTFTEDGLREIARVSHSLNEKIENIGARRLYTVVEKVLE 424 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++SF+A ++ ++ +V+D YV IG+ ++ D+ FIL Sbjct: 425 EVSFNAPEVPQE-IVVDVNYVNERIGEIAADEDLSAFIL 462 >gi|319778977|ref|YP_004129890.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella equigenitalis MCE9] gi|317109001|gb|ADU91747.1| ATP-dependent hsl protease ATP-binding subunit HslU [Taylorella equigenitalis MCE9] Length = 444 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 226/442 (51%), Positives = 304/442 (68%), Gaps = 15/442 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELD+YIIGQ AK++VA+ALRNRWRRQQ+ LR E+ PKNI+++GPTGVGK Sbjct: 7 MTPKEIVSELDKYIIGQTKAKKSVAVALRNRWRRQQVAEPLRTEIHPKNIMMIGPTGVGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVGR+VE IIRDL D+++ +RES V A Sbjct: 67 TEIARRLAKLAKAPFIKVEATKFTEVGYVGRDVETIIRDLTDISVKQLRESDMKRVNSIA 126 Query: 127 SINAEERILDALVGKTATS--------NT-REVFRKKLRDGEISDKEIDIEVADTSSDIS 177 AE+RILD LV T S NT R+VFRKKLR+G++ D EI+++V + Sbjct: 127 QDAAEDRILDILVTPTHDSEGNPVREENTARQVFRKKLREGKLDDMEIEVDVKPPAV--- 183 Query: 178 NFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 +I G +V + NL LFS + RK K +M+++K L +ES++ ++ D + Sbjct: 184 QMEILGIDAVDDMRDNLKGLFSSI-SKERKNKKKMTIKKALKVLTDEESEKHLNEDDIRE 242 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE GIVFLDE DKI + + VSR+GVQRDLLPL+EG++V TKYG + TDH Sbjct: 243 RAIINVEQNGIVFLDEIDKITSSSEKSSADVSRQGVQRDLLPLIEGTTVKTKYGMVKTDH 302 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFI SGAFH+S+P+DL+PE+QGR P+RV L +L+ DF IL +T+S+LI QY L+ T Sbjct: 303 ILFITSGAFHLSKPSDLIPELQGRLPIRVELDALSTDDFVRILKETDSSLIKQYTALLDT 362 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + LDFTED I +A++A +N + +IGARRL TVME++LE ISF A T+ ID Sbjct: 363 ESVKLDFTEDGIRRIAELAYEVNENMENIGARRLYTVMEKLLEQISFDADSNSGSTLTID 422 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +YV + D + D+ ++L Sbjct: 423 KDYVNDKLQDIVKDQDLSQYVL 444 >gi|312143681|ref|YP_003995127.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp. 'sapolanicus'] gi|311904332|gb|ADQ14773.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium sp. 'sapolanicus'] Length = 464 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/455 (46%), Positives = 326/455 (71%), Gaps = 26/455 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELD+YIIGQ DAK++VAIALRNR+RR+ + D++DE++PKNIL++GPTGVGK Sbjct: 12 LTPKEIVSELDKYIIGQDDAKKSVAIALRNRYRRKLVRDDMKDEIIPKNILMIGPTGVGK 71 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APFIK+EVTKFTE+GYVGR+VE +IRD+ + +I +V+E + ++V +A Sbjct: 72 TEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMIRDITETSIRMVKEHKMEKVEVEA 131 Query: 127 SINAEERILDALV-GKTATSNT----------------------REVFRKKLRDGEISDK 163 A ERI+D ++ GK + R+ +++++G++ D Sbjct: 132 EKMAIERIVDIMLPGKNKKKDDYFSKMADKDESKDELDDRVKARRQRMFERIKEGKLDDH 191 Query: 164 EIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 +I+IEV A++ + F G +GI N ++ + S +KKK ++++++ L + Sbjct: 192 KIEIEVEANSQQMLEVFSGSGVEEMGI-NFQDMLGNIFPS-KKKKKKVTIKQAKEILKQS 249 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 E+ +LIDM+ V ++I VEN GI+FLDE DKI R+SG+G VSR+GVQRD+LP+VEGS Sbjct: 250 EAQKLIDMEQVKSEAIDKVENDGIIFLDEIDKIAGRESGSGPEVSRQGVQRDILPIVEGS 309 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +V TK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ IL + Sbjct: 310 TVVTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRENFKDILLLPQ 369 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++LI QYK L++TEG+ ++F+E++++ +++ A ++N +IGARRL T+ME++LED+SF Sbjct: 370 NSLIKQYKALLETEGVEIEFSEEAVEEISNFAFDINEETENIGARRLHTIMEKLLEDLSF 429 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A L+ ++ID +YV + D ++ D+ +IL Sbjct: 430 EAPGLETDKIIIDVDYVHDKLKDVVADKDLSKYIL 464 >gi|152976195|ref|YP_001375712.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043903|sp|A7GRF9|HSLU_BACCN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|152024947|gb|ABS22717.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cytotoxicus NVH 391-98] Length = 463 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +LP DLRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLPEDLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMMVKV 120 Query: 123 REQASINAEERILDALVGK------------------------------TATSNTREVFR 152 +++A A +R+++ LV T R+ Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQTGFKNPLEMLFGGNQNVNQTSESQDDTEIQKKRQEVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 K+L G + ++ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 KQLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEG++V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGANVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ L+ QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 SVDDFVKILIEPDNALVKQYAALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + V I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKVTITPQYVEEKLATIAKNKDVSQFIL 463 >gi|320535376|ref|ZP_08035490.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis F0421] gi|320147778|gb|EFW39280.1| ATP-dependent protease HslVU, ATPase subunit [Treponema phagedenis F0421] Length = 471 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/466 (45%), Positives = 319/466 (68%), Gaps = 37/466 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVSELD+YIIGQ AKRAVAIALRNR RR +LP ++R+E+ PKNIL++GPTGVGK Sbjct: 8 LTPKQIVSELDKYIIGQNKAKRAVAIALRNRTRRLKLPEEIREEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+ APF+KVE TK+TE+GYVGR+VE +IRDL+ V +V+ ++ ++E+A Sbjct: 68 TEIARRLAKLSKAPFLKVEATKYTEVGYVGRDVESMIRDLMMVGYAMVKTEMQESLKEKA 127 Query: 127 SINAEERILDALVG-----------------------KTATSN---------TREVFRKK 154 N E+R+LD L+ K T N TRE F + Sbjct: 128 EKNVEDRLLDVLLPGSQKPKEKKSAEKPAPIMIPSMVKETTPNESETNTMPDTREKFCQM 187 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGI---LNLSELFSKVMGSGRKKKIRMS 211 LRDG++ +K +++ V S + F+I G+S + ++ + S +MG R K+ +++ Sbjct: 188 LRDGKLEEKTVEVTVQPQGS--AGFEIFAGSSNMEDIEMTMNNITSMIMGGNRAKRKKVT 245 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+ +E D+L+D D + ++ + V+ GI+F+DE DK+ ++ VSREGV Sbjct: 246 VKEARDILLAEELDKLVDHDKITDEAKRRVQQMGIIFIDEIDKVASKSERGSADVSREGV 305 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V+TK+G I+T HILFIA+GAF++S+P+DL+PE QGRFP+RV L+SL++ Sbjct: 306 QRDILPIVEGSNVNTKFGVIDTRHILFIAAGAFNISKPSDLIPEFQGRFPLRVELESLHQ 365 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF+ IL + ++ L QY EL+KTE + ++FT+++ID ++ +A ++N+ + +IGARRL T Sbjct: 366 EDFKRILLEPKNALTKQYSELLKTENVTIEFTDEAIDRMSFLAADVNARMENIGARRLNT 425 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ME +LEDISF+ASD+ +TV ID YV + D + D+ +IL Sbjct: 426 IMEMLLEDISFNASDMSGQTVTIDVAYVDERLKDIVQDQDLSRYIL 471 >gi|325473782|gb|EGC76970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema denticola F0402] Length = 484 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/478 (44%), Positives = 318/478 (66%), Gaps = 46/478 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++ V+ELD+YIIGQ AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG Sbjct: 7 DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V +V+ +++++EQ Sbjct: 67 KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126 Query: 126 ASINAEERILDALV-----GKTAT------------------------------------ 144 A N EE +LD L+ KTA Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAAAAQTQDVSQASSGTTISLPSVSSTAQAEEHKAQNEN 186 Query: 145 --SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKVM 200 S TRE FR LR+ ++ DK +++ ++ + + GG+++ + +S + S +M Sbjct: 187 DMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSMLM 246 Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-D 259 G + K+ +SV++ +M ++ DR++D D V ++ Q VE GI+F+DE DK+ +R D Sbjct: 247 GGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRSD 306 Query: 260 SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319 G G VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QGR Sbjct: 307 RGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQGR 366 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 FP+RV L++L+ DF+ IL + ++ L QY EL++TEG+ ++F +++ID ++ +A ++NS Sbjct: 367 FPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVNS 426 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T+ME +LEDISF+AS++ +TV ID YV + D + D+ +IL Sbjct: 427 KNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 484 >gi|284036544|ref|YP_003386474.1| heat shock protein HslVU, ATPase HslU [Spirosoma linguale DSM 74] gi|283815837|gb|ADB37675.1| heat shock protein HslVU, ATPase subunit HslU [Spirosoma linguale DSM 74] Length = 461 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/462 (46%), Positives = 311/462 (67%), Gaps = 29/462 (6%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 +L + +PR+IV+ELD+YIIGQ DAKR VAIALRNRWRR AD++ E+ P NIL++G Sbjct: 3 ELLKDLTPRQIVAELDQYIIGQHDAKRNVAIALRNRWRRMNSAADMQREITPNNILMIGA 62 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA++A APFIKVE +KFTE+GYVGR+VE ++RDLV+ A+N+VR ++++ Sbjct: 63 TGVGKTEIARRLAKIADAPFIKVEASKFTEVGYVGRDVESMVRDLVEQAVNMVRAAKKEA 122 Query: 122 VREQASINAEERILDALVGKTATSN-------------------TREVFRKKLRDGEISD 162 V+ +A E+ ILD L+ +N TRE FR+K+R GE+ D Sbjct: 123 VQVKAQQMVEDVILDILIPPVKPTNGHMGFENEKKDADAELNERTRERFREKIRSGEMDD 182 Query: 163 KEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 ++IDI+V + N I GGA + ++N+ E+ +M R KK ++S+ + L+ Sbjct: 183 RKIDIDVQQAQT--PNIGIMGGAIDDMSMMNIQEMIGGMM-PKRGKKRKVSIAEARKILL 239 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLP 277 +E+ +LIDMD V ++I+ E+ GI+F+DE DK+ + SGNG G VSREGVQRDLLP Sbjct: 240 EEEAAKLIDMDEVKEEAIRKAEDAGIIFIDEIDKVASARSGNGGGGPDVSREGVQRDLLP 299 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V+TKYG I+TDHILF+A+GAFHV++P+DL+PE+QGRFP+RV L+SL++ DF I Sbjct: 300 IVEGSAVNTKYGVIHTDHILFVAAGAFHVAKPSDLIPELQGRFPIRVELQSLSEDDFYQI 359 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L + ++ L QY ++K E + L F +D++ LA +A +NS V +IGARRLQTV+ ++ Sbjct: 360 LKEPKNALTKQYVAMLKAESVDLTFQDDALRELARIAFEVNSDVENIGARRLQTVLSHLM 419 Query: 398 EDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D F D+ VV+ E V + D+ FIL Sbjct: 420 NDFMFDIPDVIGANAHVVVTKELVNEKLNGLVKNRDLSQFIL 461 >gi|188586011|ref|YP_001917556.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius thermophilus JW/NM-WN-LF] gi|229486077|sp|B2A337|HSLU_NATTJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|179350698|gb|ACB84968.1| heat shock protein HslVU, ATPase subunit HslU [Natranaerobius thermophilus JW/NM-WN-LF] Length = 448 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/447 (47%), Positives = 314/447 (70%), Gaps = 16/447 (3%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +P+EIV LD+YIIGQ AKR++AIA+RNR+RRQ+L +L++E++PKNIL++GPTG Sbjct: 5 TEELTPQEIVERLDKYIIGQNKAKRSMAIAIRNRYRRQKLEEELKEEVIPKNILMIGPTG 64 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+L APFIK+EVTKFTE+GYVGRNVE +++DLV +I +V E + +EV Sbjct: 65 VGKTEIARRLAKLIKAPFIKIEVTKFTEVGYVGRNVESMVKDLVAESIQLVEEEKHEEVS 124 Query: 124 EQASINAEERILDALVGKTATSNT----------REVFRKKLRDGEISDKEIDIEVADTS 173 +QA AE RI+D L+ + +S+ R +++L G + D+ + +++ Sbjct: 125 KQARKQAENRIIDLLLSEKKSSSKGEQETDLRTRRREIKEQLFKGLLEDEYVTVKLEKEP 184 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 + N +G+ N ELF K++ + K +M+V++ L R E+D+LI+ D V Sbjct: 185 AQDDNLMGEQFEEMGV-NFKELFGKILPKESEHK-KMTVKEARKVLTRQEADKLINKDQV 242 Query: 234 HRDSIQMVENYGIVFLDEFDKIVA---RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++++I+ ENYGI+FLDEFDKI A + SG G VSREGVQRD+LP+VEGS+V+T+YG Sbjct: 243 NQEAIERAENYGIIFLDEFDKIAASSGKQSG-GQDVSREGVQRDILPIVEGSTVNTRYGR 301 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHI+FI +GAFH S+PADL+PE+QGRFP+RV L SL K DF ILT+ + L+ QYK Sbjct: 302 VKTDHIMFIGAGAFHDSKPADLIPELQGRFPIRVELDSLTKDDFYRILTEPSNALLEQYK 361 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L++TE + ++FTED+I+ LA++ +N DIGARRL T++E +LE++SF A +++ + Sbjct: 362 ALLRTEEVKVNFTEDAIEELANMCEYVNENTEDIGARRLHTILETLLEELSFYAPEMKGQ 421 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V I++ YV+ + D +E D FIL Sbjct: 422 EVEINSNYVKDQLQDIVTEKDSSRFIL 448 >gi|114566380|ref|YP_753534.1| ATP-dependent protease ATP-binding subunit HslU [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318542|sp|Q0AYP1|HSLU_SYNWW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|114337315|gb|ABI68163.1| heat shock protein HslVU, ATPase subunit HslU [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 466 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/467 (47%), Positives = 315/467 (67%), Gaps = 36/467 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 F +PREIV ELD+YIIGQQ+AK+AVAIALRNR+RR+ LP +LR+E+ PKNI+++G TGV Sbjct: 2 FKLTPREIVEELDKYIIGQQEAKKAVAIALRNRYRRKLLPDELREEIYPKNIIMIGSTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARL APFIKVE +KFTE+GYVGR+V+ ++RDLV+ +I +V++ + V + Sbjct: 62 GKTEIARRLARLVKAPFIKVEASKFTEVGYVGRDVDSMVRDLVETSIRLVKQEKMAAVEQ 121 Query: 125 QASINAEERILDALV---GKTATS--NTRE----------------------------VF 151 + AEERI+D L+ G+ + S N E + Sbjct: 122 KGRQMAEERIVDILLPFDGRKSKSPKNPFEFLLGSIQERDDVDDESERRRREIGQRREIL 181 Query: 152 RKKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 R+K+ E+ D+ I+IEV + + S + F G +GI NL ++ +M +KK+ ++ Sbjct: 182 RQKINRLELEDETIEIEVEEKNPSFMEIFSGSGVEEMGI-NLQDMLGNLMPRNKKKR-KV 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 S+ + L +ES RL+DMD +HR+ I+ E GI+FLDE DKI +++S G VSR G Sbjct: 240 SIAEARRILTYEESQRLLDMDEIHREGIKRAEEDGIIFLDEIDKIASKESNYGPDVSRGG 299 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL Sbjct: 300 VQRDILPIVEGSTVITKYGPARTDHVLFIAAGAFHVSKPSDLIPELQGRFPIRVELESLK 359 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K D + ILT+ ++LI QY L+ TE + +DFT ++ID +A+ A +NS DIGARRL Sbjct: 360 KEDLKRILTEPNNSLIKQYIALLSTEKLTMDFTPEAIDYIAERAYEVNSRTEDIGARRLH 419 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TVME++LED+ F++ D+ + +VID +YV + + D+ +IL Sbjct: 420 TVMEKLLEDLLFNSPDMAGEKLVIDIDYVAERLDRIVEDEDLSRYIL 466 >gi|309389214|gb|ADO77094.1| heat shock protein HslVU, ATPase subunit HslU [Halanaerobium praevalens DSM 2228] Length = 463 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/461 (45%), Positives = 324/461 (70%), Gaps = 27/461 (5%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 KL +P+EIV+ELD+YIIGQ++AK++VAIALRNR+RR+ + A+++DE++PKNIL++GP Sbjct: 5 KLDNQLTPKEIVAELDKYIIGQKNAKKSVAIALRNRYRRKLVKAEMKDEIIPKNILMIGP 64 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA++A APFIK+EVTKFTE+GYVGR+VE ++RDL + AI IV+E++R+ Sbjct: 65 TGVGKTEIARRLAKIARAPFIKIEVTKFTEVGYVGRDVESMVRDLTESAIRIVKENKREA 124 Query: 122 VREQASINAEERILDALVGKTATSNT------------------------REVFRKKLRD 157 V +A A ++I+D ++ +N R+ K++ Sbjct: 125 VEIEAEKMAIQKIVDHMLPGKKNNNDDYYSNLVDDVKKNPANLDDRVAARRKRMFKRIES 184 Query: 158 GEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 G++ ++I+IEV + + + F G +GI N ++ + +K+K ++S+++ Sbjct: 185 GQLDQQKIEIEVEENNQQMMEVFSGSGVEEMGI-NFQDMLGNIF-PNKKEKKKVSIKQAK 242 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 L +E +LIDM+ V ++IQ VE GI+FLDE DKI ++SG+G VSR+GVQRD+L Sbjct: 243 EILKDEEVQKLIDMEQVKVEAIQKVEEDGIIFLDEMDKIAGKESGSGPEVSRQGVQRDIL 302 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+VSTK+GS+ TDHILFIA+GAFHVS PADL+PE+QGRFP+RV+L SL++ +F+ Sbjct: 303 PIVEGSTVSTKHGSVKTDHILFIAAGAFHVSSPADLIPELQGRFPLRVNLNSLSRQNFKD 362 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 IL +++L+ QYK L++TEGI ++FTE +++ ++ A ++N +IGARRL T+ME++ Sbjct: 363 ILLLPQNSLVKQYKALLETEGIEIEFTEKAVEEISSFAYDINEETENIGARRLHTIMEKL 422 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+SF A ++ +K V I+ E V+ + D + D+ +IL Sbjct: 423 LEDLSFEAPEITDKKVEINLECVKDKLQDVVKDKDLSKYIL 463 >gi|194014785|ref|ZP_03053402.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus ATCC 7061] gi|194013811|gb|EDW23376.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus pumilus ATCC 7061] Length = 466 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/464 (45%), Positives = 313/464 (67%), Gaps = 36/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR L L+DE++PKNIL++GPTGVGK Sbjct: 6 FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E + +V+E+A Sbjct: 66 TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEEKMKDVQEEA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKK----L 155 A +R++ LV GK + + + F RK+ L Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + IEV + S FD+ G+ + + N+ + +M +KK+ +++V+ Sbjct: 186 AMGELEDHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALGNLMPK-KKKRRKLTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L +E+ +LIDMD V ++++ E GI+F+DE DKI + VSREGVQR Sbjct: 243 EARKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQR 302 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L L+ D Sbjct: 303 DILPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIED 362 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ ++ L+ QYK L++TEGI L+F++D+I +A+VA ++N +IGARRL T++ Sbjct: 363 FVKILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTIL 422 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LE++SF A D+ TV I +YV +G + D+ FIL Sbjct: 423 EKLLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466 >gi|30263833|ref|NP_846210.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Ames] gi|47529257|ref|YP_020606.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. 'Ames Ancestor'] gi|49186679|ref|YP_029931.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Sterne] gi|49478401|ref|YP_037890.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141658|ref|YP_085170.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L] gi|165873314|ref|ZP_02217919.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0488] gi|167642029|ref|ZP_02400259.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0193] gi|170689657|ref|ZP_02880837.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0465] gi|170709355|ref|ZP_02899769.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0389] gi|177656000|ref|ZP_02937127.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0174] gi|196047759|ref|ZP_03114952.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus 03BB108] gi|218904957|ref|YP_002452791.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus AH820] gi|227813263|ref|YP_002813272.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis str. CDC 684] gi|228928877|ref|ZP_04091909.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229092869|ref|ZP_04224003.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-42] gi|229186068|ref|ZP_04313238.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BGSC 6E1] gi|229604413|ref|YP_002868067.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis str. A0248] gi|254683464|ref|ZP_05147324.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. CNEVA-9066] gi|254721985|ref|ZP_05183774.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. A1055] gi|254735867|ref|ZP_05193573.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Western North America USA6153] gi|254739607|ref|ZP_05197301.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Kruger B] gi|254759319|ref|ZP_05211344.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Australia 94] gi|62286774|sp|Q636J7|HSLU_BACCZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286815|sp|Q6HEY6|HSLU_BACHK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286872|sp|Q81WK6|HSLU_BACAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|226704515|sp|B7JJA7|HSLU_BACC0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802294|sp|C3P5N1|HSLU_BACAA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802295|sp|C3L798|HSLU_BACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|30258477|gb|AAP27696.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis str. Ames] gi|47504405|gb|AAT33081.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. 'Ames Ancestor'] gi|49180606|gb|AAT55982.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. Sterne] gi|49329957|gb|AAT60603.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975127|gb|AAU16677.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus cereus E33L] gi|164710952|gb|EDR16524.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0488] gi|167510009|gb|EDR85425.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0193] gi|170125729|gb|EDS94642.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0389] gi|170666381|gb|EDT17164.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0465] gi|172079899|gb|EDT65007.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. A0174] gi|196021407|gb|EDX60121.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus 03BB108] gi|218537902|gb|ACK90300.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus AH820] gi|227005941|gb|ACP15684.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus anthracis str. CDC 684] gi|228597487|gb|EEK55137.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BGSC 6E1] gi|228690491|gb|EEL44274.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-42] gi|228830684|gb|EEM76289.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229268821|gb|ACQ50458.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus anthracis str. A0248] Length = 463 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|42526720|ref|NP_971818.1| ATP-dependent protease ATP-binding subunit HslU [Treponema denticola ATCC 35405] gi|62286839|sp|Q73NE3|HSLU_TREDE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|41817035|gb|AAS11729.1| heat shock protein HslVU, ATPase subunit HslU [Treponema denticola ATCC 35405] Length = 485 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/479 (44%), Positives = 318/479 (66%), Gaps = 47/479 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++ V+ELD+YIIGQ AKRAVAIALRNR RR +LP ++RDE+ PKNIL++GPTGVG Sbjct: 7 DLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRDEIAPKNILMIGPTGVG 66 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V +V+ +++++EQ Sbjct: 67 KTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYTMVKSEMQEKLKEQ 126 Query: 126 ASINAEERILDALV-----GKTAT------------------------------------ 144 A N EE +LD L+ KTA Sbjct: 127 AEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASSGTTISLPSVSSTAQAEEHKAQNE 186 Query: 145 ---SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN--LSELFSKV 199 S TRE FR LR+ ++ DK +++ ++ + + GG+++ + +S + S + Sbjct: 187 NDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSML 246 Query: 200 MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR- 258 MG + K+ +SV++ +M ++ DR++D D V ++ Q VE GI+F+DE DK+ +R Sbjct: 247 MGGAKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEIDKVASRS 306 Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318 D G G VSREGVQRD+LP+VEGS VSTKYG ++T HILFIA+GAF VS+P+DL+PE QG Sbjct: 307 DRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAGAFSVSKPSDLIPEFQG 366 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 RFP+RV L++L+ DF+ IL + ++ L QY EL++TEG+ ++F +++ID ++ +A ++N Sbjct: 367 RFPLRVELEALHAEDFKRILLEPKNALTKQYAELLETEGVKIEFLDEAIDRMSFLAADVN 426 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 S +IGARRL T+ME +LEDISF+AS++ +TV ID YV + D + D+ +IL Sbjct: 427 SKNENIGARRLHTIMEMLLEDISFNASEMGGETVKIDVAYVDERLKDIVQDQDLSRYIL 485 >gi|167037674|ref|YP_001665252.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116089|ref|YP_004186248.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389488|ref|ZP_08211055.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter ethanolicus JW 200] gi|259491381|sp|B0K9V3|HSLU_THEP3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166856508|gb|ABY94916.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929180|gb|ADV79865.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994493|gb|EGD52918.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter ethanolicus JW 200] Length = 459 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/458 (46%), Positives = 318/458 (69%), Gaps = 27/458 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR LP D ++E+ PKNI++VGPTGVG Sbjct: 3 NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + +V E+ Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122 Query: 126 ASINAEERILDALVGK--TATSNT------------------------REVFRKKLRDGE 159 A AE+R++D ++GK T N RE R+KLR+GE Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + + ++IEV DTS+ + G+ +NL ++F+ ++ +KK ++ V + L Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ LIDMD V ++I+ EN GI+F+DE DKI + G VSREGVQRD+LP++ Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K DF IL Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ L QY+EL++TEGI + +T+++I+A+A+VA +N DIGARRL TVME++ E+ Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF+A +L + +VI EYV+ + D ++ ++ +IL Sbjct: 422 LSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 459 >gi|228954105|ref|ZP_04116134.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071327|ref|ZP_04204550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus F65185] gi|229081084|ref|ZP_04213594.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock4-2] gi|229180105|ref|ZP_04307449.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 172560W] gi|229191998|ref|ZP_04318968.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 10876] gi|228591549|gb|EEK49398.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 10876] gi|228603314|gb|EEK60791.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 172560W] gi|228702128|gb|EEL54604.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock4-2] gi|228711781|gb|EEL63733.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus F65185] gi|228805671|gb|EEM52261.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 463 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTSDTQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|157692295|ref|YP_001486757.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus pumilus SAFR-032] gi|167017224|sp|A8FD80|CLPY_BACP2 RecName: Full=ATP-dependent protease ATPase subunit ClpY gi|157681053|gb|ABV62197.1| T01 family HslU component of HslUV peptidase [Bacillus pumilus SAFR-032] Length = 466 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/464 (45%), Positives = 313/464 (67%), Gaps = 36/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PREIV +LD+YIIGQ DAK+AVA+ALRNR+RR L L+DE++PKNIL++GPTGVGK Sbjct: 6 FTPREIVEKLDQYIIGQLDAKKAVAVALRNRYRRSLLHDKLKDEVVPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+++GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IV+E + +V+E+A Sbjct: 66 TEIARRIAKISGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRIVKEDKMKDVQEEA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKK----L 155 A +R++ LV GK + + + F RK+ L Sbjct: 126 EKQANKRLVHLLVPGKKKSQSVKNPFEMLFGGSDEDDRDRDQSSEEVELESTRKRIAHQL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + IEV + S FD+ G+ + + N+ + +M +KK+ +++V+ Sbjct: 186 AMGELEDHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALGNLMPK-KKKRRKLTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L +E+ +LIDMD V ++++ E GI+F+DE DKI + VSREGVQR Sbjct: 243 EARKALTAEEASKLIDMDEVSQEAVYKAEQQGIIFIDEIDKIAKSGGASSADVSREGVQR 302 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V TKYG++ TDH+LF+A+GAFH+++P+DL+PE+QGRFP+RV L L+ D Sbjct: 303 DILPIVEGSTVMTKYGAVKTDHVLFVAAGAFHMAKPSDLIPELQGRFPIRVELDKLSIED 362 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT+ ++ L+ QYK L++TEGI L+F++D+I +A+VA ++N +IGARRL T++ Sbjct: 363 FVKILTEPDNALLKQYKALLETEGISLEFSDDAIHKIAEVAYHVNQETDNIGARRLHTIL 422 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LE++SF A D+ TV I +YV +G + D+ FIL Sbjct: 423 EKLLEELSFEAPDITLGTVTITPQYVEEKLGKIANNKDLSQFIL 466 >gi|20807894|ref|NP_623065.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter tengcongensis MB4] gi|22653791|sp|Q8R9Y3|HSLU_THETN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|20516460|gb|AAM24669.1| ATP-dependent protease, ATPase subunit [Thermoanaerobacter tengcongensis MB4] Length = 461 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/462 (45%), Positives = 316/462 (68%), Gaps = 26/462 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ N++P+EIV+ELD+YI+GQ++AK++VA+ALRNR+RR LP D ++E+ PKNIL+VG Sbjct: 1 MRNVKNYTPKEIVAELDKYIVGQKEAKKSVAVALRNRYRRSLLPEDFKEEVTPKNILMVG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + Sbjct: 61 PTGVGKTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLK 120 Query: 121 EVREQASINAEERILDALVGKTAT-------------------------SNTREVFRKKL 155 V E+A AEER++D L+GK S RE R++L Sbjct: 121 AVTEKAKKLAEERLIDYLLGKKKKQPKNPFEMIFNYPSSERTEEPDNVDSYKREEIRQRL 180 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R GE+ + ++IEV DT+ + GA + L ++FS ++ +KK +++V + Sbjct: 181 RSGELDNHMVEIEVTDTTPPMLEMYTNLGAEELNITLQDMFSDLLPK-KKKLRKVTVAEA 239 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L +E+ LIDMD V ++++ EN GI+F+DE DKI + G VSREGVQRDL Sbjct: 240 KKILEAEEAQNLIDMDEVIEEAVKRAENDGIIFIDEIDKIASTGYSAGPDVSREGVQRDL 299 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP++EG +V TKYG + TD+ILFIA+GAF+V++ +DL+PE+QGRFP+RV+LK L K DF Sbjct: 300 LPIIEGCTVMTKYGPVKTDYILFIAAGAFNVAKVSDLIPELQGRFPIRVNLKPLTKEDFV 359 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + ++ L QY+EL++TEG+ + +TE++I+ +A+VA +N DIGARRL TVME+ Sbjct: 360 RILKEPKNALTKQYQELLRTEGVEIKYTEEAIETIAEVAYLINQQSEDIGARRLHTVMEK 419 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ED+SF A +L + +VI A+YV+ + D ++ ++ +IL Sbjct: 420 LFEDLSFHAPELSGQEIVITADYVKEQLKDSLNKYEVNKYIL 461 >gi|205373366|ref|ZP_03226170.1| ATP-dependent protease ATP-binding subunit [Bacillus coahuilensis m4-4] Length = 466 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/464 (44%), Positives = 307/464 (66%), Gaps = 34/464 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 F +PR+IV LD+YI+GQQDAKR+VA+ALRNR+RR L L++E+ PKNIL++GPTGV Sbjct: 6 FRLTPRQIVERLDQYIVGQQDAKRSVAVALRNRYRRSLLEDSLKEEIHPKNILMIGPTGV 65 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + VR Sbjct: 66 GKTEIARRIAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKEEKIQSVRG 125 Query: 125 QASINAEERILDALVGKTAT-----------------------------SNTREVFRKKL 155 +A NA +R+++ LV + + R + +KL Sbjct: 126 RAEDNANKRLIELLVPSKKSQASYKNPFEMIFGNSDSEPKEEPKEDFNLAENRSIVAEKL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 ++GE+ ++ I +EV + S FD+ G+ + + N + S M +KKK R++V+ Sbjct: 186 KNGELENEYISVEVEEQQP--SMFDMLQGSGMEQMGTNFQDALSNFMPK-KKKKRRLTVK 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L +E+ +LIDMD V ++++ E GI+F+DE DK+ ++ S + VSREGVQR Sbjct: 243 EARKVLTNEEASKLIDMDEVTQEAVFKAEQAGIIFIDEIDKVASKSSSSNADVSREGVQR 302 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS++ TKYGS+ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L D Sbjct: 303 DILPIVEGSTIVTKYGSVKTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELQKLTIDD 362 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL + + + QY+ L+ TEGI ++F++D+I LA++A +N +IGARRL T+M Sbjct: 363 FVRILVEPDQAISKQYQALLSTEGIQIEFSDDAIHRLAEIAYEVNQETDNIGARRLHTIM 422 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LED+SF A D+ + + I YV +G + D+ FIL Sbjct: 423 EKLLEDLSFEAPDITMEKIEITPAYVNEKLGKIAKDKDLSQFIL 466 >gi|258511367|ref|YP_003184801.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478093|gb|ACV58412.1| heat shock protein HslVU, ATPase subunit HslU [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 464 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/461 (45%), Positives = 312/461 (67%), Gaps = 31/461 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV LDRYI+GQ+ AKRAVAIALRNR+RR +L +++ E+ PKNIL++GPTGVG Sbjct: 6 ELTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRSKLSPEMQAEVTPKNILMIGPTGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+ + V+ + Sbjct: 66 KTEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAERVKSE 125 Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156 A A +RI++ALV ++ N E+ ++KL Sbjct: 126 AEARANDRIVEALVPDPGARSRARNPLEMLFSGGFAADRPQEPSSDQVREERRRVKQKLL 185 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 G + D ++++V + + ++ IPG + + NL E+ ++ KK+ +M+V++ Sbjct: 186 MGALEDHYVEVDVEEQAGPMALGFIPGMGAESLGNLQEMLGNLLPKSTKKR-KMTVREAR 244 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 L ++E+ +LIDMD V ++I EN+GI+F+DE DKI R++ +G VSREGVQRD+L Sbjct: 245 KVLTQEEAQKLIDMDAVTAEAIYRAENHGIIFIDEMDKIAGRET-HGPDVSREGVQRDIL 303 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+VSTKYG++ TD++LFI +GAFHV++P+DL+PE+QGRFP+RV L+ L K DF Sbjct: 304 PIVEGSTVSTKYGAVKTDYMLFIGAGAFHVAKPSDLIPELQGRFPIRVELEPLTKDDFVR 363 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 IL + E++LI QY L++TEGI ++FT+++I+ +A++A +N +IGARRL T++E+V Sbjct: 364 ILREPENSLIKQYTALLETEGIRVEFTDEAIERIAEMAQKVNEETENIGARRLHTLVEKV 423 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+SF A ++ + I YV +GD D+ FIL Sbjct: 424 LEDLSFEAPEIHLGEIKITRAYVDEKLGDIVQNRDLSQFIL 464 >gi|228992557|ref|ZP_04152484.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus pseudomycoides DSM 12442] gi|228998605|ref|ZP_04158192.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides Rock3-17] gi|229006105|ref|ZP_04163793.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides Rock1-4] gi|228755181|gb|EEM04538.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides Rock1-4] gi|228761073|gb|EEM10032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides Rock3-17] gi|228767191|gb|EEM15827.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus pseudomycoides DSM 12442] Length = 463 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/469 (45%), Positives = 314/469 (66%), Gaps = 40/469 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L DLRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEDLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT----------REVF 151 +++A A +R+++ LV TS T REV Sbjct: 121 KDKAEEQANQRLVEILVPSPQKQSGFKNPLEMLFGGNQNANQTSETQDDTEIEKKRREV- 179 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKI 208 KKL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK Sbjct: 180 EKKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKR 235 Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSR Sbjct: 236 KLSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSR 294 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS+V+TKYGS+ TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 295 EGVQRDILPIVEGSNVATKYGSVKTDYILFIAAGAFHMSKPSDLIPELQGRFPIRVELTK 354 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L+ DF IL + ++ L+ QY L+ TEGI ++F++++I +A++A +N +IGARR Sbjct: 355 LSVDDFVKILVEPDNALVKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARR 414 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 415 LHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|118479051|ref|YP_896202.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus thuringiensis str. Al Hakam] gi|118418276|gb|ABK86695.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus thuringiensis str. Al Hakam] Length = 476 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/468 (45%), Positives = 314/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 14 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 73 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 74 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 133 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 134 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 193 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 194 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 249 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 250 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 308 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 309 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 368 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 369 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 428 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 429 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 476 >gi|189346637|ref|YP_001943166.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium limicola DSM 245] gi|189340784|gb|ACD90187.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium limicola DSM 245] Length = 490 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 224/478 (46%), Positives = 315/478 (65%), Gaps = 52/478 (10%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 N +P +IV LD+YIIGQ+DAK++VAIALRNR RRQ + DLR+E+MP NI+++GPTG Sbjct: 21 AHNLTPNQIVELLDKYIIGQKDAKKSVAIALRNRLRRQHVGDDLREEIMPNNIIMIGPTG 80 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EV+ Sbjct: 81 VGKTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVK 140 Query: 124 EQASINAEERILDALVGKTATSNT-------------------------------REVFR 152 E+A++ EER+LD L+ S + RE Sbjct: 141 EKAALLVEERLLDILLPPAPPSRSHEDQDDDLDENRNAMAPADENDISQEVNRRSREKML 200 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---R 204 ++LR G++ D++I+++ A + PGG G L E +M SG + Sbjct: 201 ERLRKGKLEDRQIEMDTASEN--------PGGMMQIFGPLGQMEEIGSIMQDLMSGLPRK 252 Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 +KK R+++ + L ++E +LIDMD V +D+I VE GIVF+DE DKI A +G+G Sbjct: 253 RKKRRVTIAEARRILEQEEVQKLIDMDAVVKDAINKVEQSGIVFIDEIDKIAAPSTGSGG 312 Query: 265 G----VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320 G VSREGVQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHVS+P+DL+PE+QGRF Sbjct: 313 GKGPDVSREGVQRDLLPIVEGSNVATKYGIVKTDHVLFIASGAFHVSKPSDLIPELQGRF 372 Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 P+RV LKSL + DF ILT ++ LI QYK L+ TEG+ LDFT+ +I +A +A +N + Sbjct: 373 PIRVELKSLTEEDFYKILTQPKNALIKQYKALISTEGVDLDFTDGAILEIARIAAKVNES 432 Query: 381 VGDIGARRLQTVMERVLEDISFSASD-LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 V +IGARRL T+M +LE++ F+ + + E+ VVID V+ + S+ D+ +IL Sbjct: 433 VENIGARRLHTIMTNLLEELMFNIPESVTEEKVVIDEAMVQDKLSAVSSDRDLSQYIL 490 >gi|229544388|ref|ZP_04433446.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans 36D1] gi|229324873|gb|EEN90550.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus coagulans 36D1] Length = 472 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/470 (45%), Positives = 320/470 (68%), Gaps = 41/470 (8%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T + +PR+IV LD+YI+GQ++AKRAVA+ALRNR+RR L +R+E++PKNIL++GPTG Sbjct: 8 TNSLTPRQIVERLDQYIVGQKEAKRAVAVALRNRYRRSLLSEKMREEIIPKNILMIGPTG 67 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RR+ARL GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E + + VR Sbjct: 68 VGKTEIARRMARLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETAVRLVKEEKMNGVR 127 Query: 124 EQASINAEERILDALV--------------------GKTATS-----------NTREVFR 152 +QA NA ER++D LV G+ T+ ++ R Sbjct: 128 DQAEKNANERLVDLLVPSRKKQGNFKNPFEMIFGGGGQQDTAPDEEEEEYSKREQKQRIR 187 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL +GE+ D+ + +EV + +S S FD+ G+ + + +S +G+ + K+ + Sbjct: 188 EKLLNGELEDEPVTVEVEEQAS--SMFDLFQGSGMEQMGMS--VQDALGNLLPKKTKRRK 243 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVS 267 + V++ L +DE+ +LIDMD V +++I E GI+F+DE DKI +++ GNG VS Sbjct: 244 LPVREARKVLAQDEAQKLIDMDEVTQEAIFRAEQTGIIFIDEIDKIASKN-GNGSQADVS 302 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS+V TKYGSI TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ Sbjct: 303 REGVQRDILPIVEGSTVVTKYGSIKTDYILFIAAGAFHMAKPSDLIPELQGRFPIRVELE 362 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L SDF IL + ++ L+ QY L++TEGI ++F++++I +A++A +N +IGAR Sbjct: 363 KLTVSDFVKILVEPDNALVKQYIALLETEGIQIEFSDEAITRIAEIAFEVNQNTDNIGAR 422 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T+ME++LED+SF A D+ + V I +YV +G D+ +IL Sbjct: 423 RLHTIMEKLLEDLSFEAPDIHLEKVSITPQYVDEKLGAISQNKDLSQYIL 472 >gi|289185458|gb|ADC91866.1| heat shock protein, ATPase subunit [Paenibacillus popilliae] Length = 465 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/462 (45%), Positives = 312/462 (67%), Gaps = 33/462 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 ++PR+IV+ELD+YI+GQ+ AKRAVA+ALRNR+RR L ++DE++PKNIL++GPTGVGK Sbjct: 6 WTPRQIVTELDKYIVGQKMAKRAVAVALRNRYRRSLLDESIQDEIVPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ R ++V+++A Sbjct: 66 TEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDKA 125 Query: 127 SINAEERILDALV-----------------------GKTATSNTREVFRKKLR------- 156 A ERI++ L + A V ++K R Sbjct: 126 EEMANERIVEILAPSSKENKSQRNPFEMLFGQNQSHAQQAEPEPEPVLQEKQRKVRFDLL 185 Query: 157 DGEISDKEIDIEVADTSSDISNF-DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 G + ++ I+I+V D + +I +F PG +G +N+ E+F ++ R KK ++++++ Sbjct: 186 SGNLENETIEIDVEDAAPNILDFLSGPGNEQIG-MNMQEMFGSLI-PKRMKKRKLTIKEA 243 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L ++E+ +LIDMD V ++SI E GI+F+DE DKI + G+G VSREGVQRD+ Sbjct: 244 RKVLTQEEAAKLIDMDDVIQESIHRAEQSGIIFIDEIDKIASSGRGSGPDVSREGVQRDI 303 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS++ TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ SD Sbjct: 304 LPIVEGSTIITKYGPVKTDYVLFIAAGAFHIAKPSDLIPELQGRFPIRVELTSLSLSDXV 363 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT+ ++ + QY EL+KTE I ++FT+++I +A A ++N +IGARRLQT+ME+ Sbjct: 364 SILTEPKNAITKQYVELLKTENIQIEFTDEAIREIARTAADVNQNTENIGARRLQTIMEK 423 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+SF A DL I EYVR + D D+ +IL Sbjct: 424 LLEDLSFEAPDLTLDQFRITPEYVREKLSDIAQNRDLSQYIL 465 >gi|163941567|ref|YP_001646451.1| ATP-dependent protease ATP-binding subunit [Bacillus weihenstephanensis KBAB4] gi|229013012|ref|ZP_04170177.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides DSM 2048] gi|229061432|ref|ZP_04198777.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH603] gi|229134636|ref|ZP_04263446.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST196] gi|229168568|ref|ZP_04296291.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH621] gi|229486073|sp|A9VT67|HSLU_BACWK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|163863764|gb|ABY44823.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus weihenstephanensis KBAB4] gi|228614974|gb|EEK72076.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH621] gi|228648897|gb|EEL04922.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST196] gi|228717855|gb|EEL69503.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH603] gi|228748266|gb|EEL98126.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus mycoides DSM 2048] Length = 463 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/468 (45%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLVENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGNQNSNQTSDAQEDDEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ I IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEVISIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSIMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 SADDFVKILIEPDNALIKQYTALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TVME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTVMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|289578439|ref|YP_003477066.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacter italicus Ab9] gi|297544715|ref|YP_003677017.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528152|gb|ADD02504.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter italicus Ab9] gi|296842490|gb|ADH61006.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 459 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/458 (46%), Positives = 317/458 (69%), Gaps = 27/458 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR L D ++E+ PKNI++VGPTGVG Sbjct: 3 NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + V E+ Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKNVTEK 122 Query: 126 ASINAEERILDALVGK----------------TATSN----------TREVFRKKLRDGE 159 A AE+R++D +VGK +A N RE R+KLR+GE Sbjct: 123 AKKIAEDRLIDYIVGKKKKQPKNPLEMLFNYPSAEKNEETEEDGMQYKREEIRQKLRNGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + + ++IEV DTS+ + G+ +NL ++F+ ++ +KK ++ V + L Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ LIDMD V ++I+ EN GI+F+DE DKI + G VSREGVQRD+LP++ Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV+LK L K DF IL Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVNLKPLTKEDFIRILK 361 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ L QY+EL++TEGI + +T+++I+A+A+VA +N DIGARRL TVME++ E+ Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF A DL+ + +VI EYV+ + D ++ ++ +IL Sbjct: 422 LSFKAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459 >gi|167822220|ref|ZP_02453691.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 9] gi|167843815|ref|ZP_02469323.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei B7210] Length = 444 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG + Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + ++ Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V ID+ YV +G+ + D+ ++L Sbjct: 419 VTIDSAYVDHALGEVSKDEDLSRYVL 444 >gi|290981275|ref|XP_002673356.1| ATP-dependent protease [Naegleria gruberi] gi|284086939|gb|EFC40612.1| ATP-dependent protease [Naegleria gruberi] Length = 505 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/448 (47%), Positives = 311/448 (69%), Gaps = 18/448 (4%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 ++ + +P EIVS+LDR I+GQ DAKRAVA+ALRNRWRRQQL + ++DE++PKNIL+VG Sbjct: 65 LRTKTSLTPSEIVSQLDRNIVGQADAKRAVAVALRNRWRRQQLDSSIKDEIIPKNILMVG 124 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRL++LA APFIK E TK+TE+G+ G +V+ IIRDLV+V I ++ R Sbjct: 125 PTGVGKTEIARRLSKLANAPFIKTEATKYTEVGFHGSDVDSIIRDLVEVGIQHTKDRLRA 184 Query: 121 EVREQASINAEERILDALVGKTATSNTR--EVFRKKLRDGEISDKEIDIEVADTSSDISN 178 + +A AE +I++ L GK S+ +RK+LR G + DKEI++E+ Sbjct: 185 AYKTKAREFAENKIIETLTGKKKNSDESLFNEWRKQLRSGVLDDKEIEVELPVEKPR--- 241 Query: 179 FDIPGGASVG-----ILNLSELFSKVMG-SGRK-KKIRMSVQKCYPELMRDESDRLIDMD 231 +PG ++ +++ +L S + G SG K KK RM +++C P+L E D+L+ D Sbjct: 242 -GLPGAGNMQGRMPPQVDIQDLLSPLFGGSGSKTKKRRMKIKECLPKLEESEVDKLLQTD 300 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 V +++I+ VE GIVF+DE DKI + +D + S EGVQRDLLP++EG++VSTKYG Sbjct: 301 VVIKEAIRSVEEDGIVFIDEIDKICSSYKDRHDA---SSEGVQRDLLPIIEGTTVSTKYG 357 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 ++ TDHILFIA GAFH +P+D+L E+QGR P+RV LK L + DF +LT+ E+N++ Q Sbjct: 358 NVKTDHILFIACGAFHSVKPSDMLAELQGRLPIRVELKGLTEKDFNRVLTEPETNILRQN 417 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 EL+KTEG+ L+FT ++ +A VA +N+T+ +IGARRL T++E++LE+ISF+A + Sbjct: 418 IELLKTEGVDLEFTPSGVNEIAKVAFEVNTTIENIGARRLITIVEKILEEISFNAPSMSG 477 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + VVI + V+ H+G ++D+ FIL Sbjct: 478 QKVVITDKEVQQHVGALLKKSDLKKFIL 505 >gi|312132114|ref|YP_003999454.1| heat shock protein hslvu, atpase subunit hslu [Leadbetterella byssophila DSM 17132] gi|311908660|gb|ADQ19101.1| heat shock protein HslVU, ATPase subunit HslU [Leadbetterella byssophila DSM 17132] Length = 455 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/455 (45%), Positives = 313/455 (68%), Gaps = 29/455 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +IV+ELD+YIIGQ +AK+ VAIALRNRWRR +++ E++P NIL++G TGVG Sbjct: 7 NLTPGQIVAELDKYIIGQTEAKKNVAIALRNRWRRMNASPEMQAEIIPNNILMIGSTGVG 66 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ +IN+V+ ++++EV+ + Sbjct: 67 KTEIARRLAKIAEAPFTKVEASKFTEVGYVGRDVESMVRDLVEQSINMVKAAKKEEVKIK 126 Query: 126 ASINAEERILDALV-------------GKTA---TSNTREVFRKKLRDGEISDKEIDIEV 169 A E++IL+ L+ GK+ TRE FR+KL+ GE++ ++I+I++ Sbjct: 127 AQEAVEDKILNILIPPVTHKASEVLQDGKSEYELNQETREAFRQKLKKGELNHRKIEIDI 186 Query: 170 ADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 A TS+ + + GG V ++N+ E+ +M +KK+ ++S+++ ++ +ES +L Sbjct: 187 AQTSA--APIGVMGGPIDEVSMMNIQEMIGGLMPKNKKKR-KVSIEEAQKIMLEEESSKL 243 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 IDMD V ++I EN GI+F+DE DK+ + S G VSREGVQRDLLP+VEGS+V+TK Sbjct: 244 IDMDEVKEEAIWKAENLGIIFIDEIDKVASSGSKAGPDVSREGVQRDLLPIVEGSTVNTK 303 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 +G+I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL + +F IL ++ L Sbjct: 304 HGAIKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELESLTEENFLQILKAPKNALTK 363 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ +++ E I L F ED++ LA +A N+ + +IGARRLQTVM +L DI F D+ Sbjct: 364 QYQAMLEAEDIQLQFEEDALKELASIAYQANTEMENIGARRLQTVMSLLLNDILF---DV 420 Query: 408 QEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+ T+ I E VR + + D+ +IL Sbjct: 421 PERIAPGTTLSIGKELVRQKLSNLIKNKDLSQYIL 455 >gi|167717564|ref|ZP_02400800.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei DM98] gi|167736607|ref|ZP_02409381.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 14] gi|167909030|ref|ZP_02496121.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 112] gi|167917069|ref|ZP_02504160.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei BCC215] Length = 444 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/446 (47%), Positives = 318/446 (71%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 181 AVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG + Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMV 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 299 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQA 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + ++ Sbjct: 359 LLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQS 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V ID+ YV +G+ + D+ ++L Sbjct: 419 VTIDSAYVDRALGEVSKDEDLSRYVL 444 >gi|53717845|ref|YP_106831.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia pseudomallei K96243] gi|76812254|ref|YP_331799.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia pseudomallei 1710b] gi|226199758|ref|ZP_03795309.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei Pakistan 9] gi|237810380|ref|YP_002894831.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei MSHR346] gi|254182215|ref|ZP_04888812.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 1655] gi|254188141|ref|ZP_04894653.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei Pasteur 52237] gi|254258674|ref|ZP_04949728.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia pseudomallei 1710a] gi|62286777|sp|Q63YI4|HSLU_BURPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123758076|sp|Q3JXA4|HSLU_BURP1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|52208259|emb|CAH34190.1| ATP-dependent Hsl protease ATP-binding subunit [Burkholderia pseudomallei K96243] gi|76581707|gb|ABA51182.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 1710b] gi|157935821|gb|EDO91491.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei Pasteur 52237] gi|184212753|gb|EDU09796.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 1655] gi|225928109|gb|EEH24145.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei Pakistan 9] gi|237504043|gb|ACQ96361.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei MSHR346] gi|254217363|gb|EET06747.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia pseudomallei 1710a] Length = 447 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/447 (47%), Positives = 318/447 (71%), Gaps = 17/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171 A+ AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDE 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + + Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 +V ID+ YV +G+ + D+ ++L Sbjct: 421 SVTIDSAYVDHALGEVSKDEDLSRYVL 447 >gi|167900810|ref|ZP_02488015.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei NCTC 13177] Length = 447 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/447 (47%), Positives = 319/447 (71%), Gaps = 17/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171 A+ AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDE 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290 V ++Q VE GIVFLDE DKI +R+ +G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHESGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + + Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 +V ID+ YV +G+ + D+ ++L Sbjct: 421 SVTIDSAYVDRALGEVSKDEDLSRYVL 447 >gi|229162765|ref|ZP_04290722.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus R309803] gi|228620647|gb|EEK77516.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus R309803] Length = 463 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAEELRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|116515291|ref|YP_802920.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285313|sp|Q056X2|HSLU_BUCCC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|116257145|gb|ABJ90827.1| ATPase component of ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 444 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/444 (48%), Positives = 303/444 (68%), Gaps = 16/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV EL++YIIGQ +AKRAVAIALRNRWRR QL ++LR+E+ PKNIL++GPTGVGK Sbjct: 4 MTPRKIVKELNKYIIGQNNAKRAVAIALRNRWRRMQLNSELRNEITPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D+AI ++R + ++ A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDLAIKMIRLQIIKKNKKHA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERIL L+ K T ++FRKKL++G++ +KEI+I++A T Sbjct: 124 KKRAEERILKILIPVPKDNWNEENLKEKPEKTIQIFRKKLQEGKLDNKEIEIQIAATPIG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVH 234 I PG + L LF + SG+KK +R + ++ ++ +E+ +LI+++ + Sbjct: 184 IEIMSPPGMEELT-NQLQSLFQNL--SGKKKNLRKLKIKDAMKIIIEEEAAKLINLEELK 240 Query: 235 RDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I VE IVF+DE DKI S + VSREGVQRDLLPL+EG +VSTK+GS+ T Sbjct: 241 EKAIYSVEQNSIVFIDEIDKICKHHSSASNSDVSREGVQRDLLPLIEGCTVSTKHGSVKT 300 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIASGAF S P+DL+PE+QGR P+RV L +L DF ILT+ +++ QYK L+ Sbjct: 301 DHILFIASGAFQTSTPSDLIPELQGRLPIRVELNALTVDDFERILTEPNASITTQYKALI 360 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ + FT+ I +A+ + +N ++ +IGARRL TV+E+++EDISF++++ + + Sbjct: 361 KTEGVDIIFTKKGIRKIAEASWKINESMENIGARRLYTVLEKLMEDISFNSNEKFGQKIY 420 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 ID +YV LH+ D+ FIL Sbjct: 421 IDEKYVNLHLDKLIENEDLSRFIL 444 >gi|218898982|ref|YP_002447393.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus G9842] gi|226704516|sp|B7IUI8|HSLU_BACC2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|218545017|gb|ACK97411.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus G9842] Length = 463 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152 +++A A +R+++ LV + TS+T R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLASIAKNKDVSQFIL 463 >gi|53724452|ref|YP_104727.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia mallei ATCC 23344] gi|121600281|ref|YP_994209.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia mallei SAVP1] gi|124386545|ref|YP_001028138.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia mallei NCTC 10229] gi|126439830|ref|YP_001057243.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia pseudomallei 668] gi|126448941|ref|YP_001082949.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia mallei NCTC 10247] gi|126452107|ref|YP_001064483.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 1106a] gi|134284096|ref|ZP_01770790.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 305] gi|167001361|ref|ZP_02267160.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei PRL-20] gi|167813705|ref|ZP_02445385.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 91] gi|167892313|ref|ZP_02479715.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 7894] gi|217424936|ref|ZP_03456432.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 576] gi|238563255|ref|ZP_00439195.2| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei GB8 horse 4] gi|242315412|ref|ZP_04814428.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia pseudomallei 1106b] gi|254174829|ref|ZP_04881490.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei ATCC 10399] gi|254197069|ref|ZP_04903493.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei S13] gi|254201827|ref|ZP_04908191.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei FMH] gi|254207156|ref|ZP_04913507.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei JHU] gi|254295746|ref|ZP_04963203.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 406e] gi|254359662|ref|ZP_04975933.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei 2002721280] gi|62286769|sp|Q62F00|HSLU_BURMA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221466|sp|A3MRR3|HSLU_BURM7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221467|sp|A2S869|HSLU_BURM9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221468|sp|A1V7K6|HSLU_BURMS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221469|sp|A3NQ62|HSLU_BURP0 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221470|sp|A3N4H2|HSLU_BURP6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|52427875|gb|AAU48468.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei ATCC 23344] gi|121229091|gb|ABM51609.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei SAVP1] gi|124294565|gb|ABN03834.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei NCTC 10229] gi|126219323|gb|ABN82829.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia pseudomallei 668] gi|126225749|gb|ABN89289.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 1106a] gi|126241811|gb|ABO04904.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei NCTC 10247] gi|134244548|gb|EBA44652.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 305] gi|147747721|gb|EDK54797.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei FMH] gi|147752698|gb|EDK59764.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei JHU] gi|148028876|gb|EDK86808.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei 2002721280] gi|157805718|gb|EDO82888.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 406e] gi|160695874|gb|EDP85844.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia mallei ATCC 10399] gi|169653812|gb|EDS86505.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei S13] gi|217391956|gb|EEC31982.1| heat shock protein HslVU, ATPase subunit HslU [Burkholderia pseudomallei 576] gi|238521088|gb|EEP84542.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei GB8 horse 4] gi|242138651|gb|EES25053.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia pseudomallei 1106b] gi|243062873|gb|EES45059.1| ATP-dependent protease HslVU, ATPase subunit [Burkholderia mallei PRL-20] Length = 447 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/447 (47%), Positives = 318/447 (71%), Gaps = 17/447 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVG Sbjct: 3 TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR + Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122 Query: 126 ASINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVAD 171 A+ AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 183 PAVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIREALKLLTDEEAAKMLNDE 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQRDLLPLVEG++++TKYG Sbjct: 241 EVKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGM 300 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L SL+ DF IL T+++L+ QY+ Sbjct: 301 VKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQ 360 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE + L+F +D I LA++A +N +IGARRL TV+E++LE++SF+A + + Sbjct: 361 ALLATEDVKLEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQ 420 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 +V ID+ YV +G+ + D+ ++L Sbjct: 421 SVTIDSAYVDRALGEVSKDEDLSRYVL 447 >gi|229019024|ref|ZP_04175865.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1273] gi|228742264|gb|EEL92423.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1273] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|229031459|ref|ZP_04187459.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1271] gi|229174495|ref|ZP_04302027.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus MM3] gi|228609055|gb|EEK66345.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus MM3] gi|228729748|gb|EEL80728.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1271] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDAQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|225865810|ref|YP_002751188.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus 03BB102] gi|228986972|ref|ZP_04147098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|254802296|sp|C1EP53|HSLU_BACC3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|225789631|gb|ACO29848.1| ATP-dependent protease HslVU, ATPase subunit [Bacillus cereus 03BB102] gi|228772750|gb|EEM21190.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|228902332|ref|ZP_04066489.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 4222] gi|228857301|gb|EEN01804.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 4222] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152 +++A A +R+++ LV + TS+T R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|313673477|ref|YP_004051588.1| heat shock protein hslvu, atpase subunit hslu [Calditerrivibrio nitroreducens DSM 19672] gi|312940233|gb|ADR19425.1| heat shock protein HslVU, ATPase subunit HslU [Calditerrivibrio nitroreducens DSM 19672] Length = 440 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/440 (46%), Positives = 310/440 (70%), Gaps = 10/440 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IV+ELD+YIIGQ AK+AVAIALRNRWRR QLP + RD++ PKNILL+GPTGVG Sbjct: 3 HLTPKQIVAELDKYIIGQSLAKKAVAIALRNRWRRLQLPQEKRDDITPKNILLIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ +PFIKVE +KFTE+G+VGR+VE IIRDLV++AI+ + R++V ++ Sbjct: 63 KTEIARRLAKITESPFIKVEASKFTEVGFVGRDVESIIRDLVEIAISEEKVRMREQVLDE 122 Query: 126 ASINAEERILDAL-------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 A AE+ +LD L V + + + ++E FRK L G++ D+ ++I++ ++ I Sbjct: 123 ARKKAEDILLDRLLPVPTGYVDQNSIAESKEKFRKMLHQGKLDDRNVEIDIEESHPQIEI 182 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 G + NL ++F + G+KK+ M V+ + +L + E++R++DM+ V R+++ Sbjct: 183 LTNAGIDEIS-SNLQDIFKNIF-PGQKKRRLMKVKDAFIQLEQQEANRMLDMEKVKRNAL 240 Query: 239 QMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 VE+ GIVF+DE DKI +R+ G VSREGVQRDLLP++EGS++ TKYG + TDHIL Sbjct: 241 YKVEHSGIVFIDEIDKICSREGYTKGGDVSREGVQRDLLPIIEGSTIMTKYGMVKTDHIL 300 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FI +GAFH+++P+DL+PE+QGRFP+RV L SL K DF IL + E+ L QY++L+ + Sbjct: 301 FIGAGAFHIAKPSDLIPELQGRFPIRVELDSLTKEDFIKILKEPENALTKQYRDLLMADE 360 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + ++FT D I+ +A++A LN T +IGARRL T++E+VLEDIS+ A +VID+ Sbjct: 361 VEIEFTNDGIEKIAEIATELNKTNENIGARRLHTIIEKVLEDISYEAPFGHFAKIVIDSI 420 Query: 418 YVRLHIGDFPSETDMYHFIL 437 +V + ++ D+ +IL Sbjct: 421 FVESKLKTILAKQDLSKYIL 440 >gi|229098298|ref|ZP_04229245.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-29] gi|229104391|ref|ZP_04235060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-28] gi|228679089|gb|EEL33297.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-28] gi|228685196|gb|EEL39127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock3-29] Length = 463 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|294867279|ref|XP_002765040.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC 50983] gi|294893396|ref|XP_002774451.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC 50983] gi|239864920|gb|EEQ97757.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC 50983] gi|239879844|gb|EER06267.1| ATP-dependent heat shock protein, putative [Perkinsus marinus ATCC 50983] Length = 488 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/439 (48%), Positives = 300/439 (68%), Gaps = 7/439 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N PRE+V LDRY+IGQ DAKRAVA ALRNRWRRQQL +LR E+MP+N+L+VGPTGVG Sbjct: 50 NMKPREMVEYLDRYVIGQADAKRAVANALRNRWRRQQLDEELRAEIMPRNMLMVGPTGVG 109 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APFIKVE TKFTE+G+ GR+V+ IIRDL+++A+ R DE+R + Sbjct: 110 KTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVDSIIRDLLEMAMTRQRSRLEDELRPK 169 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A+ AEE+IL+AL+G + + ++ + LR + D+++ +EV T +D+ + GG+ Sbjct: 170 ATEAAEEQILNALIGPMSAQSDKDTWLAHLRAKLLDDRQVKVEVPVTDNDLYPEWVGGGS 229 Query: 186 -SVGILNLSELFSKVMGSGRKKKIR---MSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 S + + V G G +++ M+V + +L++ DR+ID D + +I+ Sbjct: 230 DSRKPPQIRVIQVPVAGGGTSRQMEKRTMTVAEARQKLVQVHLDRMIDSDMILASAIRST 289 Query: 242 ENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVF+DE DKI G +G S EGVQRDLLP++EGS VSTK+G++NTDHILFI Sbjct: 290 EQEGIVFVDEIDKICNSSKGFYHGSDASSEGVQRDLLPILEGSDVSTKHGNVNTDHILFI 349 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 SGAFH +P D+L E+QGR PVRV L +L + DF ILT+ NLI Q+K L++TEGI Sbjct: 350 CSGAFHSVKPGDMLAELQGRLPVRVTLSALTEHDFVRILTEPHHNLIEQHKALLRTEGIT 409 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418 L+F ED I +A +A +LN+ V +IGARRL TVME+++E++SF A + + TV +DA Sbjct: 410 LEFPEDGIKEIAHIAFDLNTHVENIGARRLHTVMEKIMEEVSFDAPTMGDGTTVTVDANM 469 Query: 419 VRLHIGDFPSETDMYHFIL 437 VR + S+ D++ FIL Sbjct: 470 VRTKLKPLLSKGDLHKFIL 488 >gi|167040335|ref|YP_001663320.1| ATP-dependent protease ATP-binding subunit HslU [Thermoanaerobacter sp. X514] gi|300914419|ref|ZP_07131735.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter sp. X561] gi|307724345|ref|YP_003904096.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter sp. X513] gi|259491382|sp|B0K1T6|HSLU_THEPX RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166854575|gb|ABY92984.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter sp. X514] gi|300889354|gb|EFK84500.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter sp. X561] gi|307581406|gb|ADN54805.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacter sp. X513] Length = 459 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/458 (45%), Positives = 316/458 (68%), Gaps = 27/458 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR L D ++E+ PKNI++VGPTGVG Sbjct: 3 NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + +V E+ Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122 Query: 126 ASINAEERILDALVGK--------------------------TATSNTREVFRKKLRDGE 159 A AE+R++D +VGK + RE R+KLR+GE Sbjct: 123 AKKIAEDRLIDYIVGKRKKQAKNPFEMLFNYPAAEKSEETEEESMQYKREEIRQKLRNGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + + ++IEV DTS+ + G+ +NL ++F+ ++ +KK ++ V + L Sbjct: 183 LDNYVVEIEVTDTSTPMMEMYTNLGSEEMNINLQDIFADIL-PKKKKIKKVPVYEAKRIL 241 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ LIDMD V ++I+ EN GI+F+DE DKI + G VSREGVQRD+LP++ Sbjct: 242 ESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPII 301 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG +V TKYG + TDHILFIA+GAF++++ +DL+PE+QGRFPVRV LK L K DF IL Sbjct: 302 EGCTVMTKYGPVKTDHILFIAAGAFNIAKVSDLIPELQGRFPVRVSLKPLTKEDFIRILK 361 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ L QY+EL++TEGI + +T+++I+A+A+VA +N DIGARRL TVME++ E+ Sbjct: 362 EPKNALTKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEE 421 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF+A DL+ + +VI EYV+ + D ++ ++ +IL Sbjct: 422 LSFNAPDLKGQQIVITEEYVKEQLKDSLNKYEVNKYIL 459 >gi|294507661|ref|YP_003571719.1| Heat shock protein HslU [Salinibacter ruber M8] gi|294343989|emb|CBH24767.1| Heat shock protein HslU [Salinibacter ruber M8] Length = 481 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 226/476 (47%), Positives = 323/476 (67%), Gaps = 48/476 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ P D+RDE++P NI+++GPTGVG Sbjct: 10 DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V + R+EV+++ Sbjct: 70 KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129 Query: 126 ASINAEERILDALV----------GKTAT-----------------------SNTREVFR 152 A AEERILD L+ G A+ + TRE FR Sbjct: 130 ARELAEERILDILIPPDDDTQSRAGDGASDEPGVTVSDTDDAEAEGEQTSLRARTREKFR 189 Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 KL G++ D+EI+IEV +D+ S + F G +G+ NL ELF + G ++K R++ Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGV-NLEELFGNLGGGQKRKTRRVT 248 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA----RD-SGNGIGV 266 V++ L ++E+ +LIDMD V D+++ V+ GIVF+DE DK+ + RD G G GV Sbjct: 249 VEEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGV 308 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SR+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L Sbjct: 309 SRQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVEL 368 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +L++ DF ILT ++ L+ QY+ L ++E + ++F ++ + LA +A +N+ V +IGA Sbjct: 369 NNLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGA 428 Query: 387 RRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL TV+ +LED+ F D+ E+ + IDA+ VR + S D+ +IL Sbjct: 429 RRLHTVLTTLLEDLLF---DVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481 >gi|83816415|ref|YP_445764.1| ATP-dependent protease ATP-binding subunit [Salinibacter ruber DSM 13855] gi|83757809|gb|ABC45922.1| heat shock protein HslVU, ATPase subunit HslU [Salinibacter ruber DSM 13855] Length = 481 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 226/476 (47%), Positives = 323/476 (67%), Gaps = 48/476 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV ELD+YIIGQ+DAK+ VAIALRNRWRRQ P D+RDE++P NI+++GPTGVG Sbjct: 10 DLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APFIKVE +KFTE+GYVGR+V+ +IRDL D+A+N+V + R+EV+++ Sbjct: 70 KTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDR 129 Query: 126 ASINAEERILDALV----------GKTAT-----------------------SNTREVFR 152 A AEERILD L+ G A+ + TRE FR Sbjct: 130 ARELAEERILDILIPPDDDTQSQAGDGASDEPGFTVSDTDDAEAEGEQTSLRARTREKFR 189 Query: 153 KKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 KL G++ D+EI+IEV +D+ S + F G +G+ NL ELF + G ++K R++ Sbjct: 190 DKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGV-NLEELFGNLGGGQKRKTRRVT 248 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA----RD-SGNGIGV 266 V++ L ++E+ +LIDMD V D+++ V+ GIVF+DE DK+ + RD G G GV Sbjct: 249 VEEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGV 308 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SR+GVQRDLLP+VEGS+V+TK+G + TDHILF+ASGAFH S+P+DL+PE+QGRFP+RV L Sbjct: 309 SRQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVEL 368 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +L++ DF ILT ++ L+ QY+ L ++E + ++F ++ + LA +A +N+ V +IGA Sbjct: 369 NNLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGA 428 Query: 387 RRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL TV+ +LED+ F D+ E+ + IDA+ VR + S D+ +IL Sbjct: 429 RRLHTVLTTLLEDLLF---DVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL 481 >gi|301055319|ref|YP_003793530.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI] gi|300377488|gb|ADK06392.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar anthracis str. CI] Length = 463 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGIQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|206978534|ref|ZP_03239384.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus H3081.97] gi|217961249|ref|YP_002339817.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus AH187] gi|222097274|ref|YP_002531331.1| ATP-dependent protease ATP-binding subunit hslu [Bacillus cereus Q1] gi|226704518|sp|B7HLG2|HSLU_BACC7 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|254802297|sp|B9IVB8|HSLU_BACCQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|206743257|gb|EDZ54714.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus H3081.97] gi|217067560|gb|ACJ81810.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus AH187] gi|221241332|gb|ACM14042.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus cereus Q1] gi|324327726|gb|ADY22986.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus thuringiensis serovar finitimus YBT-020] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|47570330|ref|ZP_00240975.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus G9241] gi|47552995|gb|EAL11401.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cereus G9241] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVNV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|253573514|ref|ZP_04850857.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp. oral taxon 786 str. D14] gi|251847042|gb|EES75047.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp. oral taxon 786 str. D14] Length = 467 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/465 (45%), Positives = 315/465 (67%), Gaps = 35/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+IV+ELD+YI+GQ+ AK++VA+ALRNR+RR LP +++DE++PKNIL++GPTGVG Sbjct: 5 NLTPRQIVAELDKYIVGQKQAKKSVAVALRNRYRRSLLPEEVQDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDL++ AI V+ R ++V+++ Sbjct: 65 KTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLIETAIRTVKLERTEKVKDK 124 Query: 126 ASINAEERILDALV-----------------GKTATSNT---------------REVFRK 153 A A ER++ LV G +NT R R Sbjct: 125 AEGLANERLVQILVPSENKTKGVRNPFEMLFGGGNGANTSAQEEPEEDSTLAERRRQVRF 184 Query: 154 KLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 KL G++ + +++EV D T + + F G +G +N+ E+F ++ R KK +++V Sbjct: 185 KLLSGQMENDIVEVEVEDNTPTMMDMFAGQGNDQLG-MNMQEMFGNLL-PKRTKKRKLTV 242 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L ++E+ +LID D + +++I E GI+F+DE DK+ +R G+G VSREGVQ Sbjct: 243 KEARKVLTQEEAAKLIDQDDLIQEAITRAEQSGIIFIDEIDKVASRGQGSGPDVSREGVQ 302 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG I TD+ILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL Sbjct: 303 RDILPIVEGSTVMTKYGPIKTDYILFIAAGAFHIAKPSDLIPELQGRFPIRVELDSLTLE 362 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ E+ L QY EL++TE + ++F++ +I +A +A +N+ +IGARRL T+ Sbjct: 363 DFVSILTEPENALTKQYIELLRTEDLEIEFSDAAIHEIARIAAMVNANTENIGARRLHTI 422 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+SF A +L +VI EYVR +G+ + D+ FIL Sbjct: 423 LEKLLEDLSFEAPELTLDKMVITPEYVREKLGNIAQDRDLSQFIL 467 >gi|65321156|ref|ZP_00394115.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Bacillus anthracis str. A2012] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ IL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQIIL 463 >gi|193212784|ref|YP_001998737.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobaculum parvum NCIB 8327] gi|193086261|gb|ACF11537.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobaculum parvum NCIB 8327] Length = 490 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 223/475 (46%), Positives = 315/475 (66%), Gaps = 46/475 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P +IV +LD+YIIGQ+DAK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 19 QLTPSQIVEQLDKYIIGQKDAKKSVAIALRNRLRRQNVSEELRDEIMPNNIIMIGPTGVG 78 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL + A+ +VR + +EVRE+ Sbjct: 79 KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLAEQAVAMVRSEKSEEVREK 138 Query: 126 ASINAEERILDALV---------------------GKTATSNTR----EVFRK------- 153 A++ EER+LD L+ G T + R E+ RK Sbjct: 139 AALLVEERLLDILLPPVSGIEEQESEGDEEGLVVSGDEVTGDERNLEREINRKSREKMLE 198 Query: 154 KLRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRM 210 +LR G + D++I+IE++ D + P G + +L + +M +KKK R+ Sbjct: 199 RLRSGRMEDRQIEIEISSDGQGGMMQIFGPLGQ---MEDLGGIMQDLMSGMPKKKKKRRL 255 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVS 267 ++ + L ++E +LIDMD V +++++ E GIVF+DE DKI A +G G VS Sbjct: 256 TIAEARKLLEQEEVQKLIDMDVVVKEALRKAEESGIVFIDEIDKIAAPTTGAGGKGPDVS 315 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRDLLP+VEGS+VSTK+G + TDH+LFIASGAFHV+RP+DL+PE+QGRFP+RV LK Sbjct: 316 REGVQRDLLPIVEGSAVSTKHGIVKTDHVLFIASGAFHVARPSDLIPELQGRFPIRVELK 375 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 SL + DF LILT + LI QY+ ++ TE I L+FTED+I +A A +N TV +IGAR Sbjct: 376 SLTEEDFFLILTQPRNALIKQYRAMLLTEEIDLEFTEDAIREIARTAAKVNETVENIGAR 435 Query: 388 RLQTVMERVLEDISFSASDLQ-----EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++ +LE++ F ++ +K VVIDAE VR +G ++ D+ +IL Sbjct: 436 RLHTILTNLLEELMFGIPEMVKDGSIDKHVVIDAEKVREKLGKIAADRDLSQYIL 490 >gi|194333990|ref|YP_002015850.1| ATP-dependent protease ATP-binding subunit HslU [Prosthecochloris aestuarii DSM 271] gi|194311808|gb|ACF46203.1| heat shock protein HslVU, ATPase subunit HslU [Prosthecochloris aestuarii DSM 271] Length = 487 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 218/463 (47%), Positives = 313/463 (67%), Gaps = 30/463 (6%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T + +P +IV LD+YIIGQ +AK++VAIALRNR RRQ + +LRDE+MP NI+++GPTG Sbjct: 26 TESLTPSQIVDTLDKYIIGQHEAKKSVAIALRNRLRRQSVGEELRDEIMPNNIIMIGPTG 85 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE +IRDL D A+N+VR + +EVR Sbjct: 86 VGKTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVNMVRHEKSEEVR 145 Query: 124 EQASINAEERILDALVGKTATSN------------------------TREVFRKKLRDGE 159 E+A+ EER+LD L+ S+ +RE ++LR G Sbjct: 146 EKAAALVEERLLDILLPSVPASSGEDRLSDETANGEALSMEEELNRKSREKMLERLRSGR 205 Query: 160 ISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218 + +++I++E++ D++ + P G I + + + RKK+ R+++ + Sbjct: 206 MDERQIEMEISGDSNGGMMQIFGPLGQMEEIGGMMQDLMNGLPKKRKKR-RVTIAEARKL 264 Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG---IGVSREGVQRDL 275 L ++E +LIDMD+V +++++ VE GIVF+DE DKI A SG+G VSREGVQRDL Sbjct: 265 LEQEEVQKLIDMDSVVKEAVRKVEESGIVFIDEIDKIAAPTSGSGGKGPDVSREGVQRDL 324 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + DF Sbjct: 325 LPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEDDFY 384 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT ++ LI QYK LM TEG+ L+FT+DSI +A A +N +V +IGARRL T+M Sbjct: 385 RILTQPKNALIKQYKALMATEGVDLEFTDDSIREIARTAARVNESVENIGARRLHTIMTN 444 Query: 396 VLEDISFSASDLQ-EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LE++ F+ D + VVID V + S+ D+ +IL Sbjct: 445 LLEELMFNIPDKHTDGNVVIDEAVVCGKMDRLVSDRDLSSYIL 487 >gi|222099123|ref|YP_002533691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga neapolitana DSM 4359] gi|254802319|sp|B9KBC9|HSLU_THENN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|221571513|gb|ACM22325.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermotoga neapolitana DSM 4359] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 224/465 (48%), Positives = 315/465 (67%), Gaps = 30/465 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +P+EIV ELD+YI+GQ +AK+AVAIA+RNR RRQ+LP + R E++PKNIL++G Sbjct: 1 MKSFDEMTPKEIVRELDKYIVGQTEAKKAVAIAVRNRIRRQKLPEEWRKEVLPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+L+G+PF+KVE T+FTE+GYVG+NV+ +IRDLV++++N+V++ + Sbjct: 61 PTGVGKTEIARRLAQLSGSPFLKVEATRFTEVGYVGKNVDSMIRDLVEISVNMVKQEKMK 120 Query: 121 EVREQASINAEERILDALVGKT---------------------ATSNTREVFRKKLRDGE 159 EV E+A EERILDALV ++ T R FR K + Sbjct: 121 EVEERAKELVEERILDALVPESRAVPAITNPFINLITGGQQQQYTPEDRRRFRAKREEMR 180 Query: 160 ISDKEIDIEVAD-------TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 + ++E + T+S PG +GI +S +FS ++ RKKK +M V Sbjct: 181 ERLRRGELEDEEIEVEIEETASPFMGIFGPGMEDLGI-EISNMFSGML-PKRKKKRKMKV 238 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+ E+++LIDMD V ++++ +N GI+F+DE DKI ++S +G VSR+GVQ Sbjct: 239 SEARKVLLPMEAEKLIDMDKVIQEALDRAQNRGIIFIDEIDKIAGKESASGPDVSRQGVQ 298 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG+++ TKYG + TD+ILFIA+GAFHVSRP+DL+PE+QGRFP+RV L L + Sbjct: 299 RDLLPIVEGTTIMTKYGPVRTDYILFIAAGAFHVSRPSDLIPELQGRFPIRVELSPLTEE 358 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + E+ +I QY+ L+ TEG+ L FTED I +A +A LN + +IGARRL TV Sbjct: 359 DFVRILKEPENAIIKQYQALLSTEGVELVFTEDGIREMARIAYQLNQRLENIGARRLYTV 418 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+VLE+ISF A D+ EK VVIDAEYVR + + D+ +IL Sbjct: 419 AEKVLEEISFEAPDIPEKKVVIDAEYVRKRLERIVQDEDLSAYIL 463 >gi|297584030|ref|YP_003699810.1| heat shock protein HslVU ATPase subunit HslU [Bacillus selenitireducens MLS10] gi|297142487|gb|ADH99244.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus selenitireducens MLS10] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/466 (46%), Positives = 314/466 (67%), Gaps = 34/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +PREIV LD+ IIGQ AKR+VA+ALRNR+RR L ++RDE+ PKNIL++GPT Sbjct: 1 MSQTLTPREIVERLDQSIIGQSSAKRSVAVALRNRYRRSLLEENVRDEISPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+V+I +V++ + +V Sbjct: 61 GVGKTEIARRLAKLTGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVSIRMVKQEKTVKV 120 Query: 123 REQASINAEERILDALV----GKTATSNTREVFRK------------------------- 153 R+ A A +RI+ LV +++ N E+ + Sbjct: 121 RDLAEKQANQRIIGLLVPTAKKESSYRNPLEMLFQNGEDDEEPEPEPEEHESVRERRRRI 180 Query: 154 --KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L DGE+ ++E+ IEV + + + + IPG +G +N+ ++F M +KKK ++ Sbjct: 181 TRQLEDGELEEREVTIEVEEQQNQMMDM-IPGMEQMG-MNMQDMFGG-MFPKKKKKRKLP 237 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LIDM+ V ++I E GI+F+DE DK+ ++ G VSREGV Sbjct: 238 VREARKVLAEDEAQKLIDMEEVKIEAISRAEQLGIIFVDEMDKVASKSGGQSADVSREGV 297 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V+TKYGS+ TDH+LFIA+GAFHVS+P+DL+PE+QGRFP+RV L SLN Sbjct: 298 QRDILPVVEGSTVATKYGSVKTDHMLFIAAGAFHVSKPSDLIPELQGRFPIRVELDSLNV 357 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + + LI QY+ ++ EGI L FTED+I +A++A ++N +IGARRL T Sbjct: 358 EDFVRILVEPKHALIKQYQAMIDIEGIELTFTEDAIREIAEIAYDVNEQTENIGARRLHT 417 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+SF AS++ +T+ I EYVR + + + D+ FIL Sbjct: 418 ILEKLLEDLSFEASEITMETISITPEYVREKLQNIVEDRDLSRFIL 463 >gi|322382308|ref|ZP_08056215.1| ATP-dependent protease ATP-binding subunit HslU-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153661|gb|EFX46036.1| ATP-dependent protease ATP-binding subunit HslU-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 503 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/460 (43%), Positives = 313/460 (68%), Gaps = 30/460 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV ELDRYI+GQ++AK++VA+ALRNR+RR L ++DE++PKNIL++GPTGVGK Sbjct: 45 LTPREIVKELDRYIVGQKEAKKSVAVALRNRYRRSLLDESMKDEIVPKNILMIGPTGVGK 104 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I +V+ + ++++++A Sbjct: 105 TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMVKAEKTEKLKDRA 164 Query: 127 SINAEERILDALVGKTATS----NTREVF-------------------------RKKLRD 157 A +R++ LV +S N E+F ++KL Sbjct: 165 EQLANDRLVSILVPSPKSSKGQRNPLEMFFSSQQHQEEDEEKKDSGLAERRLEMKEKLLR 224 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 GE+ D +++EV D + + + G +N+ E+F +M R K+ +++V++ Sbjct: 225 GELEDTMVEVEVEDNAPSMLDMLAGQGNEQMGMNMQEMFGNLMPK-RTKRRKLTVKEARK 283 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L +E+ +L+DMD V ++SI+ E GI+F+DE DKI + GNG VSREGVQRD+LP Sbjct: 284 ILTHEEAQKLMDMDEVVQESIERAEQSGIIFIDEIDKIASTGRGNGPDVSREGVQRDILP 343 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS++ TKYG + TD+ILF+A+GAFH+++P+DL+PE+QGRFP+RV L +L DF LI Sbjct: 344 IVEGSTIMTKYGPVKTDYILFVAAGAFHIAKPSDLIPELQGRFPIRVELNNLTLDDFVLI 403 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L + ++ L QY L++TEGI ++F++ +I+ +A +AV +N + +IGARRL T++E++L Sbjct: 404 LKEPKNALTKQYVALLETEGITVEFSQKAIEEIARIAVEVNQSTENIGARRLHTILEKLL 463 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SF A +L +T++I EYVR + + D+ +IL Sbjct: 464 EDLSFEAPELTLETMLITPEYVREKLSNIVENRDLSQYIL 503 >gi|255038554|ref|YP_003089175.1| ATP-dependent protease ATP-binding subunit HslU [Dyadobacter fermentans DSM 18053] gi|254951310|gb|ACT96010.1| heat shock protein HslVU, ATPase subunit HslU [Dyadobacter fermentans DSM 18053] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 217/459 (47%), Positives = 305/459 (66%), Gaps = 31/459 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV ELD+YIIGQ DAKR VAIALRNRWRR P D++ E++P NIL++G TGVGK Sbjct: 8 LTPRQIVFELDQYIIGQNDAKRNVAIALRNRWRRMNSPEDIQREIIPNNILMIGATGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VR +++EV+ +A Sbjct: 68 TEIARRLAKIADAPFVKVEASKFTEVGYVGRDVESMVRDLVEQAVGMVRTQKKEEVKIKA 127 Query: 127 SINAEERILDALVGKTATSN-----------------------TREVFRKKLRDGEISDK 163 E+ ILDAL+ S TRE FR+K+R+GE+ + Sbjct: 128 EQAVEDIILDALIPPVHGSGGTRPLPDNGSEEMPQSDAELNQRTRERFREKIRNGELDSR 187 Query: 164 EIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 +I+IEV + + N + GGA V ++N+ E+ +M R KK +++V++ L+ Sbjct: 188 KIEIEV--QQNQMPNVGMIGGAVDDVSMMNIQEMIGNMMPR-RGKKRKVTVEEARKLLLD 244 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVE 280 +E+ +LIDMD V ++I+ EN GI+F+DE DK+ + R G+G VSREGVQRDLLP+VE Sbjct: 245 EEASKLIDMDEVKLEAIKKAENLGIIFIDEIDKVASSRSGGSGPDVSREGVQRDLLPIVE 304 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GSSV+TK+G I TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L SL + DF IL Sbjct: 305 GSSVNTKHGVIQTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELNSLTEGDFYQILKA 364 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ L QY +M+ EG+ LDF + ++ +A +A +NS V +IGARRLQTVM +L D Sbjct: 365 PKNALTKQYGAMMEAEGVELDFEDGALREIARIAFEVNSEVENIGARRLQTVMSSLLNDF 424 Query: 401 SFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F D+ + I AE V + D+ +IL Sbjct: 425 MFDIPDMIGDGSQITITAEMVEQKLSALVKNRDLSQYIL 463 >gi|228940917|ref|ZP_04103476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973846|ref|ZP_04134422.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785871|gb|EEM33874.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818753|gb|EEM64819.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 463 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 315/468 (67%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152 +++A A +R+++ LV + TS+T R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + ++ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|323453275|gb|EGB09147.1| hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens] Length = 491 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/442 (47%), Positives = 301/442 (68%), Gaps = 13/442 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR IV ELD++I+GQ AKRAVAIALRNRWRRQ L +L+ E++PKNIL++GPTG G Sbjct: 53 TMTPRAIVDELDKHIVGQSAAKRAVAIALRNRWRRQLLGEELKAEIVPKNILMIGPTGCG 112 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL++LA APFIKVE TKFTE+G+ GR+V+QIIRDLV+ +I + R+ + ++ RE+ Sbjct: 113 KTEIARRLSKLAQAPFIKVEATKFTEVGFHGRDVDQIIRDLVEASITLTRKKKAEQFREE 172 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A E RILD L G A T+ FR+ LR G + D++ID+ D + PGG Sbjct: 173 ARRLVEGRILDTLTGLNAAQATQSSFREMLRKGVLDDRQIDV---DLPAAQPGAQPPGGV 229 Query: 186 -------SVGILNLSELFSKV--MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 + I + F+ + G GR ++ RMS+++ P + E D+L++ +H++ Sbjct: 230 IQLDQNNPISINDFLGRFNALAQQGKGRSERKRMSIREARPLIEEQELDKLLEGVDIHKE 289 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 ++ VE GIVF+DE DKIV G S EGVQRDLLPL+EGS++STKYG+++TD+I Sbjct: 290 AVAAVEESGIVFIDEIDKIVNASDYRGADASAEGVQRDLLPLIEGSTISTKYGNVDTDYI 349 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFIASGAFH ++P+DLL E+QGR P+RV L +L ++D ILT+ E+NLI Q + L+ TE Sbjct: 350 LFIASGAFHQAKPSDLLAELQGRLPIRVELDALTEADMHRILTEPETNLIAQQRALLATE 409 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-ID 415 ++L+FT+ +I +A VA N T+ +IGARRL T +ER+++DISF+A D + +V +D Sbjct: 410 NVMLEFTDCAIREIARVASLANRTIENIGARRLHTCIERIIDDISFNACDYKPGDLVTVD 469 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV + D ++D+ +IL Sbjct: 470 KAYVEGKVDDLLIQSDLSKYIL 491 >gi|168703139|ref|ZP_02735416.1| heat shock protein HslVU, ATPase subunit HslU [Gemmata obscuriglobus UQM 2246] Length = 444 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/446 (49%), Positives = 307/446 (68%), Gaps = 17/446 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV+ELD+YI+GQ AK+AVA+A+RNRWRRQQL A+LR ++ PKNI+L+GPTGVGK Sbjct: 1 MTPRQIVAELDKYIVGQAAAKKAVAVAIRNRWRRQQLSAELRQDVTPKNIILIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA L GAPFIKVE TKFTE+GYVGR+VE IIRDL + I +V++ R +VRE+A Sbjct: 61 TEIARRLASLVGAPFIKVEATKFTEVGYVGRDVESIIRDLTEAGIGLVKQEMRVKVREKA 120 Query: 127 SINAEERILDALVG---KTA------------TSNTREVFRKKLRDGEISDKEIDIEVAD 171 ER+LD +V +TA TRE FR KL GE+ D +++ V Sbjct: 121 QEKVTERLLDLVVPLPKRTAWEPEQEKEDEERRRRTREKFRAKLEAGELEDHVVELTVEQ 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 ++ + F G ++ + +L +F K+M + + ++ V+ L+ E++ LID Sbjct: 181 KATPVQIFSNLGMENMDV-DLQGMFDKMMPKNAQPR-QLPVRDARKVLLEQETESLIDRA 238 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 V +I+ VEN+GIVFLDE DK+ +G G VSR+GVQRDLLP+VEG++V+TK+G + Sbjct: 239 AVVEQAIERVENHGIVFLDEIDKVCGPSNGQGPDVSRQGVQRDLLPVVEGTTVNTKHGPV 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFHVS+PADL+PE+QGRFP+RV L L K DF +LT+ + L QY E Sbjct: 299 KTDHILFIAAGAFHVSKPADLMPELQGRFPIRVELTDLTKPDFLRVLTEPKHALPKQYAE 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++TEG+ L+FT D ++ALAD+A ++N +IGARRL TV+E+V+E++SF DL K Sbjct: 359 LLRTEGVELEFTTDGLEALADIAFDVNRANQNIGARRLHTVIEKVVEEVSFEGPDLDNKR 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 VVID +VR +G D+ +IL Sbjct: 419 VVIDGPFVRSKLGPVIQREDLSKYIL 444 >gi|218234543|ref|YP_002368630.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus cereus B4264] gi|228922583|ref|ZP_04085883.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960045|ref|ZP_04121709.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047515|ref|ZP_04193105.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH676] gi|229111300|ref|ZP_04240853.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock1-15] gi|229129105|ref|ZP_04258078.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-Cer4] gi|229146400|ref|ZP_04274771.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST24] gi|229152028|ref|ZP_04280223.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus m1550] gi|296504324|ref|YP_003666024.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis BMB171] gi|226704517|sp|B7HDV2|HSLU_BACC4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|218162500|gb|ACK62492.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus B4264] gi|228631377|gb|EEK88011.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus m1550] gi|228637033|gb|EEK93492.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST24] gi|228654342|gb|EEL10207.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-Cer4] gi|228672076|gb|EEL27367.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock1-15] gi|228723762|gb|EEL75117.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH676] gi|228799561|gb|EEM46514.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228837012|gb|EEM82353.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325376|gb|ADH08304.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis BMB171] Length = 463 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + ++ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|302779676|ref|XP_002971613.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii] gi|300160745|gb|EFJ27362.1| hypothetical protein SELMODRAFT_412083 [Selaginella moellendorffii] Length = 444 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/440 (47%), Positives = 309/440 (70%), Gaps = 16/440 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P ++V LDRYI+GQ AKRAVA+A RNRWRR ++P +LRDE++PKNIL++GPTG GK Sbjct: 12 LTPAKVVEVLDRYIVGQTAAKRAVAVAFRNRWRRHRIPVELRDEIVPKNILMIGPTGCGK 71 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+ R ++ ++ Sbjct: 72 TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 131 Query: 127 SINAEERILDALVG--------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 + E+RILD LVG K+ TS ++FRK R+G I +++I ++V + + Sbjct: 132 EKSVEDRILDVLVGVQQEEISEKSLTS--MDMFRKLYREGAIDNRKIQLDVPEGRVRLP- 188 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 D+ G L +++L KV+ S + ++ ++V + P L E ++ + D + +D+I Sbjct: 189 VDVMGNG----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAI 244 Query: 239 QMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 Q+ E+ GIVF+DE DKIV ++ G S EGVQRDLLP++EGS V+TKYG++NTDHIL Sbjct: 245 QLTESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHIL 304 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FI SGAFH +P+D+L E+QGR P+RV LK+L + D ILT+ E N++ Q + L+KTEG Sbjct: 305 FICSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLKTEG 364 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L FTED++ LA+VA +N ++ +IGARRL TV+ERV+EDISFSA + + ++ID E Sbjct: 365 VELIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKE 424 Query: 418 YVRLHIGDFPSETDMYHFIL 437 VR +GD ++ D+ F+L Sbjct: 425 KVRKSVGDLLNKMDLSKFVL 444 >gi|319649572|ref|ZP_08003728.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. 2_A_57_CT2] gi|317398734|gb|EFV79416.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. 2_A_57_CT2] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/465 (45%), Positives = 310/465 (66%), Gaps = 36/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+IV LD++IIGQ+DAK+AVA+ALRNR+RR L LRDE+ PKNIL++GPTGVG Sbjct: 6 NLTPRQIVERLDQFIIGQKDAKKAVAVALRNRYRRSLLEEKLRDEVNPKNILMIGPTGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + V+E+ Sbjct: 66 KTEIARRMAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMASVKER 125 Query: 126 ASINAEERILDALV-GKTATSN-----------------------------TREVFRKKL 155 A +A RIL+ LV G +N R++ ++KL Sbjct: 126 AEESANRRILELLVPGAKKAANYKNPLEMLFGGGNDQQQDTYQTEDLNLQEKRKIVKEKL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213 GE+ ++ I +EV + S FD+ G+ + +N+ + S +M RKK+ +++V+ Sbjct: 186 ALGELENEVITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLMPKKRKKR-KLTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272 + L +E+ +LIDMD V ++++ E GI+F+DE DKI +++SG VSREGVQ Sbjct: 243 EARKILTNEEAQKLIDMDEVGQEAVFRAEQSGIIFIDEIDKIASKNSGGSSADVSREGVQ 302 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 303 RDILPVVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLTVE 362 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + ++ LI QY+ L+ TEGI ++F++D+I +A A +N +IGARRL T+ Sbjct: 363 DFYKILVEPDNALIKQYEALLVTEGIQIEFSDDAIRRIAQFAFEVNQNTDNIGARRLHTI 422 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ME++LED+SF A D+ + + I +YV +G D+ FIL Sbjct: 423 MEKLLEDLSFEAPDVTMEKITITPQYVEEKLGAISRNKDLSQFIL 467 >gi|229157405|ref|ZP_04285483.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 4342] gi|228626132|gb|EEK82881.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 4342] Length = 463 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 312/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G N R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNPNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|30021917|ref|NP_833548.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC 14579] gi|62286870|sp|Q819X7|HSLU_BACCR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|29897473|gb|AAP10749.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 14579] Length = 463 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/468 (44%), Positives = 313/468 (66%), Gaps = 38/468 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + ++ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 237 LSVKEARKLLSNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 295 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 296 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 355 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 356 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 415 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 416 HTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >gi|313901988|ref|ZP_07835404.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter subterraneus DSM 13965] gi|313467777|gb|EFR63275.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter subterraneus DSM 13965] Length = 480 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 224/468 (47%), Positives = 313/468 (66%), Gaps = 40/468 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV+ELDRYI+GQ +AKRAVAIALRNRWRRQQLP LRDE+ PKNIL++GPTGVGK Sbjct: 16 LTPRQIVAELDRYIVGQAEAKRAVAIALRNRWRRQQLPPHLRDEVAPKNILMIGPTGVGK 75 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDL++ AI +V+ R V ++A Sbjct: 76 TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLLETAIRMVKAERVAAVEDRA 135 Query: 127 SINAEERILDALVGKTATSNT-----------------------------------REVF 151 A++R+LD LV R+ Sbjct: 136 RAAADDRLLDVLVPPPRRRPQRAGSPWEMLLGSLGAGMPGPAEPARPEEEEDWRRHRQEA 195 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG--ILNLSELFSKVMGSGRKKKIR 209 +LR G++ D+ ++IEV D + + DI GG + LN+ +L K RK++ R Sbjct: 196 AARLRSGQLEDQVVEIEVEDQAPPM--VDILGGPGLEEVTLNVQDLL-KDWLPRRKRRRR 252 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V++ L ++E+ +LIDMD V ++I+ E GIVF+DE DKI R+ G+G VSRE Sbjct: 253 LPVREAREVLAQEEAQKLIDMDQVVAEAIRRTEQAGIVFIDEIDKIAGRERGHGPDVSRE 312 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V T++G + TDHILFIA+GAFH++RP+DL+PE+QGRFP+RV L+ L Sbjct: 313 GVQRDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHIARPSDLIPELQGRFPIRVELQPL 372 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D+++ALAD+A N +IGARRL Sbjct: 373 TRDDFKRILTEPDNALLRQYQALLATDGVELEFTPDAVEALADMAARANQQAENIGARRL 432 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ER+LE ++F A D + VV+DA +VR + + D+ +IL Sbjct: 433 HTLLERLLEPVAFDAPDALQGKVVVDAAFVRQRLEGVLQDQDLSRYIL 480 >gi|226313075|ref|YP_002772969.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus brevis NBRC 100599] gi|226096023|dbj|BAH44465.1| ATP-dependent hsl protease ATP-binding subunit hslU [Brevibacillus brevis NBRC 100599] Length = 473 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/463 (43%), Positives = 308/463 (66%), Gaps = 34/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR IV LD+YI+GQ AK+A+A+ALRNR+RR +LP + DE++PKNIL++GPTGVG Sbjct: 14 QLTPRTIVEHLDKYIVGQAQAKKAIAVALRNRYRRSRLPEQMIDEVVPKNILMIGPTGVG 73 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ +I V++ + + V+E+ Sbjct: 74 KTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEASIRTVKQEKVESVKEK 133 Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155 A A E I++ LV SN+ R +L Sbjct: 134 AEKLANEAIVNVLVPSRKQSNSFKNPLEMFFGGQQQQQQDTTDQEEVSIEQQRRQVMWQL 193 Query: 156 RDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 +G++ ++ I+IEV D S + + F +PG +G + + ++ +M R KK ++ ++ Sbjct: 194 TNGQLEEQMIEIEVEDQSPSMFDMFQVPGTEQMG-MQMQDMLGSLMPK-RMKKRKLRIKD 251 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L++ E+ +L+DMD V ++SI+ E +GI+F+DE DKI +D G G VSREGVQRD Sbjct: 252 ARKVLIQQEAQKLVDMDEVTQESIRRAEQHGIIFIDEIDKIAGKD-GRGPDVSREGVQRD 310 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL DF Sbjct: 311 ILPIVEGSTVMTKYGPVKTDYVLFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLRVEDF 370 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 ILT+ ++ L+ QY L++TEG+ ++FT ++I LA +A +N + +IGARRL T++E Sbjct: 371 VRILTEPKNALLKQYVALLETEGVQVEFTPEAIQELARLAAEVNQSTDNIGARRLHTILE 430 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+SF A ++ + V I +YV+ +G D+ +IL Sbjct: 431 KLLEDLSFEAPEIHLEVVQITPDYVKQKLGTIVGNKDLSQYIL 473 >gi|261855923|ref|YP_003263206.1| heat shock protein HslVU, ATPase HslU [Halothiobacillus neapolitanus c2] gi|261836392|gb|ACX96159.1| heat shock protein HslVU, ATPase subunit HslU [Halothiobacillus neapolitanus c2] Length = 446 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 218/454 (48%), Positives = 309/454 (68%), Gaps = 29/454 (6%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV+ELD++I+GQ AKRAVAIALRNRWRRQQ+ LR E+ PKNIL++GPTGV Sbjct: 1 MNLTPKEIVTELDKHIVGQAAAKRAVAIALRNRWRRQQVGEPLRGEITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APF+KVE TKFTE+GYVGR+VE IIRDL D+ + + R+ EVR+ Sbjct: 61 GKTEIARRLAKLADAPFLKVEATKFTEVGYVGRDVESIIRDLADIGLKMQRQIAMVEVRD 120 Query: 125 QASINAEERILDALV------GKTATS---------NTREVFRKKLRDGEISDKEIDIEV 169 +A I E R+LDAL+ G +T+ NTRE FR+KLR+GE+ DKE++IE+ Sbjct: 121 KAQIAGENRVLDALLPAPRDEGWNSTADSHRDEAYRNTREKFRQKLRNGELDDKEVEIEL 180 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMG------SGRKKKIRMSVQKCYPELMRDE 223 T+S+I PG + E+ S++ G G+ + R+ V + L +E Sbjct: 181 RQTASNIDILSPPG--------MEEMASQIRGMFQNVNQGKTQTRRLPVSEALKLLTEEE 232 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283 + L++ + V +++ VE +GIVF+DE DK+ R G VSREGVQRDLLP++EGS+ Sbjct: 233 AGNLVNEEEVRAQALERVEQHGIVFIDEIDKVAKRGEYGGGEVSREGVQRDLLPIIEGST 292 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 V+TK G + TDHILFIASGAFH+S+P+DL+PE+QGR P+RV L++L+ DF ILT+ ++ Sbjct: 293 VNTKLGMVKTDHILFIASGAFHLSKPSDLIPELQGRLPIRVELEALSAKDFVRILTEPDA 352 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 LI Q+ L+ +E + F++++I +A++A +N +IGARRL TVME +LE +SF Sbjct: 353 ALIRQHTALLASEQFEVQFSDEAIQRIAEIAFEVNRRTENIGARRLHTVMEHLLEALSFD 412 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A +T+ IDA++V +G + D+ FIL Sbjct: 413 ADTRSGETMNIDADFVDQRLGALAEDEDLSRFIL 446 >gi|78188754|ref|YP_379092.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium chlorochromatii CaD3] gi|78170953|gb|ABB28049.1| Heat shock protein HslU [Chlorobium chlorochromatii CaD3] Length = 495 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/476 (46%), Positives = 313/476 (65%), Gaps = 51/476 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +IVS+LD+YIIGQ+DAK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 27 NLTPSQIVSQLDKYIIGQKDAKKSVAIALRNRLRRQSVSDELRDEIMPNNIIMIGPTGVG 86 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EVRE Sbjct: 87 KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVALVRSEKSEEVREA 146 Query: 126 ASINAEERILDALV------------------------------GKTATSN--TREVFRK 153 A+I EERILD L+ K A N TR+ + Sbjct: 147 AAIFVEERILDILIPPIVANQHTNDEEQEEQQEEGQEEQSPSDQKKLAEMNRRTRKKMVE 206 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVM-----GSGRK- 205 +LR G++ D++I++ D+S D PGG G L E +M G RK Sbjct: 207 RLRSGKLEDRQIEL-------DVSGNDSPGGMMQIFGPLGHMEEIGSLMQDLMSGMPRKR 259 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---N 262 KK R+++ + L ++E +LIDM++V +++I VE GIVF+DE DKI + +G Sbjct: 260 KKRRVTIAEARKLLEQEEVQKLIDMESVIKEAINKVEQSGIVFIDEIDKIASPTTGAGGK 319 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 G VSREGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFH+++P+DL+PE+QGRFP+ Sbjct: 320 GPDVSREGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHLAKPSDLIPELQGRFPI 379 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV LKSL + DF LILT ++ LI QY ++ TEG+ L FTE +I +A +A +N V Sbjct: 380 RVELKSLTEDDFYLILTQPDNALIKQYSAMLATEGVTLHFTEGAIREIARIAAQVNENVE 439 Query: 383 DIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T+M +LE++ F+ + + V ID + VR + ++ D+ +IL Sbjct: 440 NIGARRLHTIMTNLLEELMFNIPENFSDDNVEIDEDMVRNKLNQVVADRDLSQYIL 495 >gi|317121811|ref|YP_004101814.1| heat shock protein HslVU, ATPase HslU [Thermaerobacter marianensis DSM 12885] gi|315591791|gb|ADU51087.1| heat shock protein HslVU, ATPase subunit HslU [Thermaerobacter marianensis DSM 12885] Length = 485 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 228/467 (48%), Positives = 312/467 (66%), Gaps = 39/467 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV+ELDRYI+GQ AKRAVAIALRNRWRRQQLP LRDE+ PKNIL++GPTGVGK Sbjct: 22 LTPRQIVAELDRYIVGQAAAKRAVAIALRNRWRRQQLPPQLRDEVAPKNILMIGPTGVGK 81 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLARL GAPFIKVE TKFTE+GYVGR+VE IIRDLV+ AI +V+ R V+++A Sbjct: 82 TEIARRLARLTGAPFIKVEATKFTEVGYVGRDVESIIRDLVETAIRMVKAERMATVQDRA 141 Query: 127 SINAEERILDALVGK--------------------TATSNTREV--------------FR 152 A+ER+LD LV A S V Sbjct: 142 RAAADERLLDVLVPPPRRRAQRFSSPWEMLLGSLGAAPSPAEPVRPEEEEDWRRRRQEVA 201 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG--ILNLSELFSKVMGSGRKKKIRM 210 +LR GE+ D+ ++IEV D + + DI GG + LN+ +L K RK++ R+ Sbjct: 202 ARLRAGELEDQVVEIEVEDQTPPM--VDILGGPGLEEMTLNVQDLL-KDWLPRRKRRRRL 258 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V++ L ++E+ +LIDMD V ++++ E GIVF+DE DKI R+ G+G VSREG Sbjct: 259 PVREAREVLAQEEAQKLIDMDQVVAEAVRRTEQAGIVFIDEIDKIAGRERGHGPDVSREG 318 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V T++G + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+ L Sbjct: 319 VQRDILPIVEGSTVMTRHGPVRTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQPLT 378 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT+ ++ L+ QY+ L+ T+G+ L+FT D++D LA +A N +IGARRL Sbjct: 379 REDFKRILTEPDNALLRQYQALLATDGVELEFTPDAVDELAAMAARANEQAENIGARRLH 438 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ERVLE ++F A D + VV+DA +VR + + D+ +IL Sbjct: 439 TLLERVLEPLAFDAPDALQGKVVVDAAFVRQRLEGVLKDQDLSRYIL 485 >gi|225621070|ref|YP_002722328.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira hyodysenteriae WA1] gi|225215890|gb|ACN84624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Brachyspira hyodysenteriae WA1] Length = 453 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/452 (45%), Positives = 314/452 (69%), Gaps = 20/452 (4%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 KL +PR+IV LD+YIIGQ +AKR+VAIALRNR+RR+ LP +LRDE+ PKNI+L+GP Sbjct: 6 KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPDELRDEVAPKNIILIGP 65 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+L APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI ++ + E Sbjct: 66 TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFDLKTAMMKE 125 Query: 122 VREQA--------------SINAE--ERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165 V ++A S+ E E I + K N +E +K++++G+ + + Sbjct: 126 VEKEATEIALDKLAKLLLPSVKKENDENISEEEAEKK--KNAKEQIKKRIQNGDFDESYV 183 Query: 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESD 225 +I+++ ++ + IPG + + +M + +K K R+ V++ L+ + S+ Sbjct: 184 EIKISSGNNRMFGI-IPGMGFEESDMIQSMVGSIMPTNKKHK-RLRVKEAKKYLINEASE 241 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 LIDMD + D++ + EN GI+FLDE DKI + + + V+R GVQRDLLP+VEG++V+ Sbjct: 242 SLIDMDKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVN 301 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 T+YG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ + Sbjct: 302 TRYGPVKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAI 361 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 QY+EL+KTEG+ ++F E+++ A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA Sbjct: 362 TKQYQELLKTEGVTIEFEEEALSAIADIAYNINTNVENIGARRLYTIMEKVFEEISFSAD 421 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + + + I+A+ ++ + D D+ +IL Sbjct: 422 EHKGEFIKINADNIKESMKDIEDNRDISRYIL 453 >gi|254490675|ref|ZP_05103860.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga thiooxidans DMS010] gi|224464131|gb|EEF80395.1| heat shock protein HslVU, ATPase subunit HslU [Methylophaga thiooxydans DMS010] Length = 439 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 220/439 (50%), Positives = 302/439 (68%), Gaps = 9/439 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IV ELD+ IIGQQ AK+AVAIALRNRWRR+QL + L+ E+ PKNIL++GPTGVG Sbjct: 3 SLTPKQIVLELDKRIIGQQAAKKAVAIALRNRWRRKQLESSLQQEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA LA APFIKVE TKFTE+GYVGR+VE IIRDL + A+ ++RE V+ + Sbjct: 63 KTEIARRLAALANAPFIKVEATKFTEVGYVGRDVESIIRDLAETAMKLLREKAIQAVKSK 122 Query: 126 ASINAEERILDAL------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 A AE+RILDAL V S TR+ FRK LR+G++ D+E+++E+ + Sbjct: 123 AEDAAEDRILDALLRPARDVETEDDSTTRQRFRKMLREGKLDDREVELELNAPQVGVEIM 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 PG + L ++F + MGS RK +++V +L +E+ +LI+ + + + + Sbjct: 183 SPPGMEEM-TNQLQDMF-QSMGSQRKTTRKLTVSNALRQLAEEEALKLINEEELKAEVLD 240 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 VE GIVFLDE DKI R G+G VSR GVQRDLLPLVEGS+VSTKYG I TDHILF Sbjct: 241 SVEQNGIVFLDEIDKITGRGEGSGSADVSRAGVQRDLLPLVEGSTVSTKYGMIKTDHILF 300 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAFH+S+P+DL+PE+QGR P+RV L++L DF ILT+ +++L QY L+ TEG+ Sbjct: 301 IASGAFHLSKPSDLIPELQGRLPIRVELEALTSQDFVRILTEPDASLTEQYVALLATEGV 360 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L+FTE+ I +A++A +N +IGARRL T++ER+LEDIS++A V +D Y Sbjct: 361 ELEFTEEGIQRIAELAWEVNEKTENIGARRLHTMLERLLEDISYNAGSELNFKVTVDRSY 420 Query: 419 VRLHIGDFPSETDMYHFIL 437 V + + + D+ +IL Sbjct: 421 VDQQLAELSQDEDLSRYIL 439 >gi|307718594|ref|YP_003874126.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta thermophila DSM 6192] gi|306532319|gb|ADN01853.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta thermophila DSM 6192] Length = 448 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/444 (48%), Positives = 311/444 (70%), Gaps = 18/444 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV ELD+YI+GQ AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG Sbjct: 11 DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+ ++ VRE+ Sbjct: 71 KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQEGVREE 130 Query: 126 ASINAEERILDALV--GKTATS------NTREVFRKKLRDGEISDKEIDIEVA-DTSSDI 176 A EER+LD L+ +TAT TRE FR+ LR GE+ D+ +++ V I Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLRKGELDDRMVEVSVRRPLMPSI 190 Query: 177 SNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 F G +G+ L+ LF G +K+ R+ V++ L+ +E +RLID D V Sbjct: 191 EVFSGTGFEEIGMSLGGLANLF------GGEKRKRVKVRQAKELLLAEEMERLIDTDQVA 244 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + Q VE GIVF+DE DKI ++ G + VSREGVQRDLLP++EG+ V+T+YG ++T Sbjct: 245 EIARQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDT 304 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F ILT ++ LI QY EL+ Sbjct: 305 SHILFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELL 364 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ + FT+++++ +A +A +N+ +IGARRL T+ME VLE++SF+ ++Q + + Sbjct: 365 KTEGVEISFTQEALEEIARIAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKIT 424 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I A+YV+ + D+ +IL Sbjct: 425 ITADYVKERLAKVLVNEDITRYIL 448 >gi|308173578|ref|YP_003920283.1| two-component ATP-dependent protease [Bacillus amyloliquefaciens DSM 7] gi|307606442|emb|CBI42813.1| two-component ATP-dependent protease (ATPase and chaperone) [Bacillus amyloliquefaciens DSM 7] Length = 467 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQQDAK+AVA+ALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + EV+EQA Sbjct: 66 TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK + + F RK++ Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + + N+ + S ++ +KK+ +M+V+ Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++ E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEASKLIDMDEVSQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF A D+ + V I +YV +G + D+ FIL Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467 >gi|315186393|gb|EFU20153.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta thermophila DSM 6578] Length = 448 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/444 (47%), Positives = 309/444 (69%), Gaps = 18/444 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV ELD+YI+GQ AK+ VAIALRNRWRRQQLP +LRDE+ PKNI+++GPTGVG Sbjct: 11 DLTPRQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVG 70 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR++RL GAPF+KVE TK+TE+GYVGR+VE +IRDL+ VA+ +V+ + V+E+ Sbjct: 71 KTEIARRISRLTGAPFLKVEATKYTEVGYVGRDVESMIRDLMSVAVAMVKSEMQAGVQEE 130 Query: 126 ASINAEERILDALV--GKTATS------NTREVFRKKLRDGEISDKEIDIEVA-DTSSDI 176 A EER+LD L+ +TAT TRE FR+ L+ GE+ D+ +++ V I Sbjct: 131 AERRVEERLLDLLLPGSRTATGESGVSPGTRERFREMLKKGELDDRMVEVSVRRPLMPSI 190 Query: 177 SNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 F G +G+ L+ LF G +K+ R+ V++ L+ +E +RLID D V Sbjct: 191 EVFSGTGFEEIGMSLGGLANLF------GGEKRKRVKVRQAKELLLAEEMERLIDTDQVA 244 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + Q VE GIVF+DE DKI ++ G + VSREGVQRDLLP++EG+ V+T+YG ++T Sbjct: 245 EIARQRVEQMGIVFIDEIDKIAVKEGKTGGVDVSREGVQRDLLPIIEGAKVNTRYGIVDT 304 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L + +F ILT ++ LI QY EL+ Sbjct: 305 SHILFIAAGAFHMSKPSDLIPELQGRFPLRVELEPLARDEFFKILTQPQNALIKQYTELL 364 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ + FT+++++ +A A +N+ +IGARRL T+ME VLE++SF+ ++Q + + Sbjct: 365 KTEGVEISFTQEALEEIARTAEEVNTRTENIGARRLHTIMEVVLEEVSFAGPEIQGQKIT 424 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I A+YV+ + D+ +IL Sbjct: 425 ITADYVKERLAKVLVNEDITRYIL 448 >gi|194336304|ref|YP_002018098.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon phaeoclathratiforme BU-1] gi|194308781|gb|ACF43481.1| heat shock protein HslVU, ATPase subunit HslU [Pelodictyon phaeoclathratiforme BU-1] Length = 496 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 221/476 (46%), Positives = 313/476 (65%), Gaps = 52/476 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ + DLRDE+MP NI+++GPTGVG Sbjct: 29 NLTPNQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQHVSDDLRDEIMPNNIIMIGPTGVG 88 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR R +EVRE+ Sbjct: 89 KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSERSEEVREK 148 Query: 126 ASINAEERILDALVGKTATS--------------------------------NTREVFRK 153 A + EER+LD L+ A+S +R + Sbjct: 149 AVLLVEERLLDILLPPVASSRNAESDDESSAEEGVTESPAADEHDKSLEVNRRSRRKMLE 208 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---RK 205 +LR+G++ D++I++++ D PGG G L E +M SG ++ Sbjct: 209 RLRNGKLEDRQIEMDITG--------DAPGGMMQVFGPLGQMEEIGGIMQDLMSGLPRKR 260 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 KK R+S+ + L ++E +LIDMD+V +++I VE GIVF+DE DKI SG+G Sbjct: 261 KKRRVSIAEARKILEQEEVQKLIDMDSVVKEAINKVEQSGIVFIDEIDKIATPSSGSGSK 320 Query: 266 ---VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 VSREGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+ Sbjct: 321 GPDVSREGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPI 380 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV LKSL + DF LILT E+ LI QY L+ TEG+ L F++ +I +A +A +N +V Sbjct: 381 RVELKSLTEEDFYLILTQPENALIKQYSALLATEGVDLTFSDGAIREIARIAARVNESVE 440 Query: 383 DIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T+M +LE++ F+ + ++ V ID V+ + ++ D+ +IL Sbjct: 441 NIGARRLHTIMTNLLEELMFNIPENFSDERVEIDETMVKEKLNHVVADRDLSQYIL 496 >gi|328553489|gb|AEB23981.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus amyloliquefaciens TA208] gi|328911719|gb|AEB63315.1| two-component ATP-dependent protease (ATPase and chaperone) [Bacillus amyloliquefaciens LL3] Length = 467 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQQDAK+AVA+ALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + EV+EQA Sbjct: 66 TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK + + F RK++ Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGGQPTNDDEADQQEEASLEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + + N+ + S ++ +KK+ +M+V+ Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++ E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEAGKLIDMDEVSQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF A D+ + V I +YV +G + D+ FIL Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467 >gi|320354504|ref|YP_004195843.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus propionicus DSM 2032] gi|320123006|gb|ADW18552.1| heat shock protein HslVU, ATPase subunit HslU [Desulfobulbus propionicus DSM 2032] Length = 469 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/471 (47%), Positives = 308/471 (65%), Gaps = 36/471 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK + +P+E V+ELDRYIIGQ +AKR+VAIALRNRWRRQQ+ LR+E+ PKNI+++G Sbjct: 1 MKGINSLTPKETVAELDRYIIGQPEAKRSVAIALRNRWRRQQVQPPLREEIAPKNIIMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA LA +PF+KVE +KFTE+GYVGR+VE +IRDL +A+N+V + Sbjct: 61 PTGVGKTEIARRLAHLAQSPFLKVEASKFTEVGYVGRDVESMIRDLTQLAVNMVTKEEEA 120 Query: 121 EVREQASINAEERILDALVGKT----------ATSN--------------------TREV 150 V+E+A+ AEER+LD L+ +T SN TRE Sbjct: 121 GVQEKAAALAEERLLDLLLPRTPGHGAGSSTPTASNVISLGYDGAEGRQEELRGQTTRER 180 Query: 151 FRKKLRDGEISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 FR+ LR GE+ D+ +++ V A + + G +L E FSK +K+ + Sbjct: 181 FREMLRRGELDDRVVELSVSAGGGTPVVEVFSASGMEEMQNSLQEAFSKFF-PKKKQAKK 239 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---V 266 M V + L R+E++RL+D ++V +I+ E GI+FLDE DKI +R G G G V Sbjct: 240 MKVPQALEFLKREEAERLVDTESVTEKAIRRTEQSGIIFLDEIDKIASR-GGTGSGSPDV 298 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SREGVQRDLLP+VEG++V+TKYG + TDHILFIASGAFH+ +P+DL PE+QGRFP+RV+L Sbjct: 299 SREGVQRDLLPIVEGTTVTTKYGPVKTDHILFIASGAFHLCKPSDLAPELQGRFPIRVNL 358 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +L + +F ILT+ + LI QY L+ TE I L+F E++I +A +AV +N DIGA Sbjct: 359 HALGEEEFFRILTEPRNALIKQYTALLATEDIRLEFEEEAIREMARIAVQVNQKTEDIGA 418 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL TV+ERVL+++SF A D + + A+YVR + D D+ +IL Sbjct: 419 RRLHTVIERVLDELSFDAPDRDDLAFTVTADYVRRQLTDISENEDLSRYIL 469 >gi|254750996|ref|ZP_05203035.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Vollum] Length = 460 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/450 (46%), Positives = 308/450 (68%), Gaps = 38/450 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 8 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 67 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 68 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 127 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 128 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 187 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIR 209 +KL G + D+ + IEV + S S FD+ G + + ++ F +GS + KK + Sbjct: 188 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRK 243 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSRE Sbjct: 244 LSVKEARKVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSRE 302 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 303 GVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKL 362 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL Sbjct: 363 STDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRL 422 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYV 419 T+ME++LED+SF AS++ + + I +YV Sbjct: 423 HTIMEKLLEDLSFEASEITLEKITITPQYV 452 >gi|99034191|ref|ZP_01314270.1| hypothetical protein Wendoof_01000935 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 396 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/397 (51%), Positives = 293/397 (73%), Gaps = 4/397 (1%) Query: 44 PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 P LRDE++PKNIL++G TGVGKT I+RRLA+LAGAPFIK+E TKFTEIGYVGR+V+ II Sbjct: 1 PFPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKIEATKFTEIGYVGRDVDSII 60 Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDK 163 RDLVD AI +V+E R + ++A I AE+ I++++VG+ AT ++++FR++LR+ E D Sbjct: 61 RDLVDAAIVLVKEKARKALAKKALILAEKTIVNSMVGENATEESKKIFRERLRNKEFEDG 120 Query: 164 EIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVM-GSGRKKKIRMSVQKCYPELM 220 E+ I V ++ S + FDIPG G VG++N++E+ K+ GS + K I + V++ L+ Sbjct: 121 EVSINVRESKSMLPTFDIPGMPGGQVGVMNVTEIMGKMFNGSKKTKTITVKVKEAREILI 180 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 +ES+RL+D D + +++I +V N GIVFLDE DKI AR G V+REGVQRDLLPL+E Sbjct: 181 NEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNREGVQRDLLPLLE 239 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+QGR P+RV LK+L + D IL + Sbjct: 240 GTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPELQGRLPIRVELKALTQEDLIRILKE 299 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ES+L+ QY LMKTE + L+FT+D I +A++A +N V +IGARRL TVME++L++I Sbjct: 300 PESSLLKQYIALMKTENVTLEFTDDGIKTIAEIAFTVNRQVENIGARRLHTVMEKLLDEI 359 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF AS+ + +ID++YV+ + + D+ FIL Sbjct: 360 SFIASEKNSEKFIIDSKYVKDKLESISKQLDLSKFIL 396 >gi|154686032|ref|YP_001421193.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus amyloliquefaciens FZB42] gi|166221460|sp|A7Z4N6|CLPY_BACA2 RecName: Full=ATP-dependent protease ATPase subunit ClpY gi|154351883|gb|ABS73962.1| ClpY [Bacillus amyloliquefaciens FZB42] Length = 467 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQQDAK+AVA+ALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQQDAKKAVAVALRNRYRRSLLDEKLRDEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + EV+EQA Sbjct: 66 TEIARRIAKLTGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKISEVKEQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK + + F RK++ Sbjct: 126 EENANKRIVRLLVPGKKKQAGVKNPFEMLFGGNQAANDDEADQQEEASLEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + + N+ + S ++ +KK+ +M+V+ Sbjct: 186 ALGELEDHYVSVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNLVPK-KKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++ E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEAGKLIDMDEVGQEAVLRAEEGGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF A D+ + V I +YV +G + D+ FIL Sbjct: 422 ILERLLEDLSFEAPDVTMEKVAITPQYVEEKLGTIANNKDLSQFIL 467 >gi|145219766|ref|YP_001130475.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris vibrioformis DSM 265] gi|145205930|gb|ABP36973.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium phaeovibrioides DSM 265] Length = 492 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/470 (46%), Positives = 315/470 (67%), Gaps = 41/470 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 26 HLTPHQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVGEELRDEIMPNNIIMIGPTGVG 85 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EVRE+ Sbjct: 86 KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 145 Query: 126 ASINAEERILDALVGKTATS-------------------------------NTREVFRKK 154 A+ + EERI+D L+ A S +RE ++ Sbjct: 146 AAAHVEERIIDILLPPVAGSAEDDIQEALIEGDEGSSSSFEPKDESLEVNRRSREKMLQR 205 Query: 155 LRDGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVM-GSGRK-KKIRMS 211 LR+G++ D++I+++V+ D+S + P G + + + +M G RK KK R++ Sbjct: 206 LREGKLEDRQIEMDVSGDSSGGMMQIFGPMGQ---MEEIGGIMQDLMNGLPRKSKKRRVT 262 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSR 268 + L ++E +LIDMDTV +++I VE GIVF+DE DKI A +G G VSR Sbjct: 263 IADARRILEQEEVQKLIDMDTVVKEAIIKVEQSGIVFIDEIDKIAAPTTGGGAKGPDVSR 322 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKS Sbjct: 323 EGVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKS 382 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L + DF LILT + LI QY+ LM TEG+ L FT+ SI +A A +N +V +IGARR Sbjct: 383 LTEEDFYLILTQPRNALIKQYRALMGTEGVDLQFTDGSIREIARTAAVVNESVENIGARR 442 Query: 389 LQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T+M +LE++ F ++ + V+ID E V+ + S+ D+ +IL Sbjct: 443 LHTIMTNLLEELMFDIPENMSKGKVLIDEEMVKAKLNHVASDRDLSQYIL 492 >gi|120602656|ref|YP_967056.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio vulgaris DP4] gi|166221476|sp|A1VDW3|HSLU_DESVV RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|120562885|gb|ABM28629.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio vulgaris DP4] Length = 441 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/447 (48%), Positives = 303/447 (67%), Gaps = 23/447 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L LRDE+ PKNI+++GPTGVG Sbjct: 3 TLTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+ VR + Sbjct: 63 KTEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRAR 122 Query: 126 ASINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS--DIS 177 A AEER+LD L+ G +TR+ R R G + D+E+D+EV +++ + Sbjct: 123 AEAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMD 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSG---RKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 F +PG S+G F +MG R+K +M +++ + L+ +E+ RL+D D V Sbjct: 183 IFAMPGMESMG-----NQFRDLMGKAFPARRKMRKMKLREAWNLLVDEEASRLLDQDKVV 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS 290 + + VE GI+F+DE DK+ SG G +SREGVQRDLLP+VEGS V+TKYG Sbjct: 238 DIARERVEQTGIIFIDELDKVA---SGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGM 294 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L +L + +F ILT+ + L QY Sbjct: 295 VRTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELDALGRDEFYRILTEPHNALTRQYA 354 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG+ + FT+D + +A A +N +IGARRL T+MER+L DISF A D + Sbjct: 355 ALLATEGVTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGE 414 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V +DA YVR H+ D + D+ +IL Sbjct: 415 HVTVDAAYVRTHLEDVRVDKDLSRYIL 441 >gi|269925575|ref|YP_003322198.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum terrenum ATCC BAA-798] gi|269789235|gb|ACZ41376.1| heat shock protein HslVU, ATPase subunit HslU [Thermobaculum terrenum ATCC BAA-798] Length = 467 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/473 (45%), Positives = 312/473 (65%), Gaps = 49/473 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +F+PR+IV ELD+YI+GQ AKRA+A+ALRNR+RRQQLP ++RDE+MPKN++L+GPTGVG Sbjct: 3 DFTPRQIVKELDKYIVGQDKAKRALAVALRNRYRRQQLPPEIRDEVMPKNLMLIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ++RRL++L APFIKVE TKFTE+GYVG +VE I+R+LV+ ++N+V D V+E+ Sbjct: 63 KTELARRLSKLVDAPFIKVEATKFTEVGYVGHDVESIVRELVETSVNMVHMKAMDRVKEE 122 Query: 126 ASINAEERILDALVGKT---------------------ATSNTREVFRKKLR-------- 156 A A ER+++ LV ++ A S + V +K++ Sbjct: 123 AEKAANERLINYLVRQSPKYKVLQEELESLADSEQESAAASTKKVVLERKMKRQRKRMAQ 182 Query: 157 -------DGEISDKEIDIE-----VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204 D EI + E+D + V D +DI + D A+ LFS + S R Sbjct: 183 MLAERRLDDEIVEIEVDPDPDLYSVVDIFADIGDSDESEDAT-------PLFS-LDQSNR 234 Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 K+ ++SV + L+++E+ ++ID D V + +Q E GIVF+DE DK+++ + Sbjct: 235 KRSRKVSVAEARRILVQEEAQKMIDFDAVIDEGVQKAEQDGIVFIDEIDKLISNGYDSNA 294 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 VS EGVQRDLLP+VEGS+V T+YG++ TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV Sbjct: 295 DVSGEGVQRDLLPIVEGSNVVTRYGTVKTDHILFIAAGAFHDSKPSDLIPELQGRFPLRV 354 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L+ L+ D + IL + +++LI QY+ L+ TEG+ L+FT D ID +A A +N + +I Sbjct: 355 ELEDLDAEDLKAILVEPDNSLIKQYQALLGTEGVELEFTPDGIDEIARFAHEMNLKMENI 414 Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 GARRLQTVMERVLED++F A+DL++K V ID YV+ + + D+ FIL Sbjct: 415 GARRLQTVMERVLEDVAFDATDLEDKHVRIDRAYVKARLENLIENEDLSRFIL 467 >gi|126654060|ref|ZP_01725886.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905] gi|126589440|gb|EAZ83587.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905] Length = 466 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/465 (44%), Positives = 310/465 (66%), Gaps = 36/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+I LDRYI+GQ +AKRAVAIALRNR+RR L D++ E++PKNIL++GPTGVG Sbjct: 5 NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ + +V+E + V+EQ Sbjct: 65 KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124 Query: 126 ASINAEERILDALV------------------GKTATSN------TREVFRKK------L 155 A A E I+ LV GK TS EV K+ L Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSEETEVRSKRAQIAIDL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212 R+G++ ++ I +EV + + I FD G + + + ++ S +M +KK+ R+ V Sbjct: 185 RNGKLENEWITVEVTEQTPSI--FDALQGTGMDMSANNGMQDMLSSLMPKKQKKR-RVQV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L +E+++LID D V ++SI E GI+F+DE DKI +++ + VSREGVQ Sbjct: 242 KDARRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQ 301 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A +N +IGARRL T+ Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTI 421 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ER+LE++SF A+++ ++ I+A YV + D+ FIL Sbjct: 422 LERLLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466 >gi|169827115|ref|YP_001697273.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus sphaericus C3-41] gi|168991603|gb|ACA39143.1| ATP-dependent hsl protease ATP-binding subunit [Lysinibacillus sphaericus C3-41] Length = 466 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/465 (44%), Positives = 311/465 (66%), Gaps = 36/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+I LDRYI+GQ +AKRAVAIALRNR+RR L D++ E++PKNIL++GPTGVG Sbjct: 5 NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ + +V+E + V+EQ Sbjct: 65 KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124 Query: 126 ASINAEERILDALV------------------GKTATS------NTREVFRKK------L 155 A A E I+ LV GK TS + EV K+ L Sbjct: 125 AEQLANEAIVKLLVPSLRKKQSMQNPFEMLFGGKEQTSTDDTSSDETEVRSKRAQIAIDL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212 R+G++ ++ + +EV + + I FD G + + + ++ S +M +KK+ R+ V Sbjct: 185 RNGKLENEWVTVEVTEQTPSI--FDALQGTGMDMSANNGMQDMLSSLMPKKQKKR-RVQV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L +E+++LID D V ++SI E GI+F+DE DKI +++ + VSREGVQ Sbjct: 242 KDARRILTIEEANKLIDADEVAQESIVRAEQTGIIFIDEIDKIASKEGNSSANVSREGVQ 301 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFIAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + + +LILQYK L++TEG+ ++FT D+I+ +A++A +N +IGARRL T+ Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEINFTSDAIERIAEIATEVNQETDNIGARRLHTI 421 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ER+LE++SF A+++ ++ I+A YV + D+ FIL Sbjct: 422 LERLLEELSFEAAEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466 >gi|296126031|ref|YP_003633283.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira murdochii DSM 12563] gi|296017847|gb|ADG71084.1| heat shock protein HslVU, ATPase subunit HslU [Brachyspira murdochii DSM 12563] Length = 453 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/450 (44%), Positives = 310/450 (68%), Gaps = 16/450 (3%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 KL +PR+IV LD+YIIGQ +AKR+VAIALRNR+RR+ LP DL+DE+ PKNI+L+GP Sbjct: 6 KLESELTPRKIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEDLKDEVAPKNIILIGP 65 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+L APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI ++ + E Sbjct: 66 TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNVAIFELKTAMMKE 125 Query: 122 VREQA--------------SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167 V ++A S+ EE + N +E +K++ +G+ + +++ Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEENENVSEEEMEKKKNAKEQIKKRIANGDFDESYVEL 185 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 ++ + + + IPG + + +M +K K R+ V++ L+ + S+ L Sbjct: 186 KITGSQNRMFGI-IPGMGFEENDMIQSMVGSIMPQSKKHK-RLRVKEAKKHLINEASESL 243 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 IDM+ + D++ + EN GI+FLDE DKI + + + V+R GVQRDLLP+VEG++V+T+ Sbjct: 244 IDMEKITSDALSLTENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNTR 303 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ + Sbjct: 304 YGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKDDFKDILVNPKNAITK 363 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+EL+KTEG+ ++F E++++A+AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + Sbjct: 364 QYQELLKTEGVTIEFEEEALEAIADMAYNINTNVENIGARRLYTIMEKVFEEISFSADEH 423 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + + I+A+ ++ + D D+ +IL Sbjct: 424 KGEFIKINADNIKDAMKDIEDNRDISRYIL 453 >gi|46579878|ref|YP_010686.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio vulgaris str. Hildenborough] gi|62286833|sp|Q72C17|HSLU_DESVH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|46449294|gb|AAS95945.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio vulgaris str. Hildenborough] gi|311234121|gb|ADP86975.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio vulgaris RCH1] Length = 441 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/447 (48%), Positives = 302/447 (67%), Gaps = 23/447 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIVSELDR+++GQ+ AKR VA+A+RNRWRRQ+L LRDE+ PKNI+++GPTGVG Sbjct: 3 TLTPREIVSELDRFVVGQEKAKRMVAVAMRNRWRRQRLEPSLRDEVAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL GAPFIKVE TK+TE+GYVGR+VE ++RDL+++ ++++R+ VR + Sbjct: 63 KTEIARRLARLCGAPFIKVEATKYTEVGYVGRDVESMVRDLMEIGVSLIRDEEATRVRAR 122 Query: 126 ASINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS--DIS 177 A AEER+LD L+ G +TR+ R R G + D+E+D+EV +++ + Sbjct: 123 AEAAAEERLLDLLLPQSPADGGETRQSTRDKLRGLWRQGHLDDREVDMEVEESTKGPQMD 182 Query: 178 NFDIPGGASVGILNLSELFSKVMGSG---RKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 F +PG S+G F +MG R+K +M +++ + L+ +E+ RL+D D V Sbjct: 183 IFAMPGMESMG-----NQFRDLMGKAFPARRKMRKMKLREAWNLLVDEEASRLLDQDKVV 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS 290 + + VE GI+F+DE DK+ SG G +SREGVQRDLLP+VEGS V+TKYG Sbjct: 238 DIARERVEQTGIIFIDELDKVA---SGEGTHRTTDISREGVQRDLLPIVEGSVVNTKYGM 294 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L L + +F ILT+ + L QY Sbjct: 295 VRTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELDPLGRDEFYRILTEPHNALTRQYA 354 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TEG+ + FT+D + +A A +N +IGARRL T+MER+L DISF A D + Sbjct: 355 ALLATEGVTVSFTDDGLREIAAFAEEVNEETENIGARRLYTMMERILADISFDAPDRPGE 414 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V +DA YVR H+ D + D+ +IL Sbjct: 415 HVTVDAAYVRTHLEDVRVDKDLSRYIL 441 >gi|183221725|ref|YP_001839721.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911800|ref|YP_001963355.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776476|gb|ABZ94777.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780147|gb|ABZ98445.1| ATPase component of the HslUV protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 472 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/459 (46%), Positives = 307/459 (66%), Gaps = 34/459 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD +IIGQ AKRAVA+ALRNR RR++L LR+E+ PKNI+++GPTGVGK Sbjct: 20 LTPRQIVERLDEHIIGQTKAKRAVAVALRNRSRRRKLNESLREEIYPKNIIMIGPTGVGK 79 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPFIKVE TK+TE+GYVGR+VE ++RDL A+N+V+ RD V+++A Sbjct: 80 TEIARRLSKLCGAPFIKVEATKYTEVGYVGRDVESMVRDLAMGALNLVKSEFRDRVKDKA 139 Query: 127 SINAEERILDALVGK-----------------TATSNTREVFRKKLRDGEISDKEIDIEV 169 AEE ILDA++ + +RE FR+KLR G +S++EI+I++ Sbjct: 140 EERAEEIILDAILPPIFHKKEEDLNPEEKERFQSYKESREKFREKLRKGILSEQEIEIDI 199 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMG---------SGRKKKIRMSVQKCYPELM 220 S+ +P G N+ E+ +++ SG++K + V L+ Sbjct: 200 PKPSAQTG---MPMLQVFGAGNMEEMDNQIQNLLGDLMPKKSGKRK---VKVSDAEKILL 253 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 E+++LID D + ++++ VE GI+FLDE DKI R+ G VSREGVQRDLLP+VE Sbjct: 254 EAEAEKLIDSDKIQSEAVRRVEEMGIIFLDEIDKIAGREGRQGADVSREGVQRDLLPIVE 313 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V+TK G I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L++L ++DF ILT Sbjct: 314 GSTVNTKLGPIKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELETLTEADFIQILTT 373 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 +S+L QY+ L+ TEG+ +++T+D I +A +A +N +IGARRL T+ME++LED Sbjct: 374 PKSSLTKQYEALLATEGVKIEYTKDGIAEIAKLAFQMNEKNENIGARRLNTIMEKLLEDT 433 Query: 401 SFSASDLQ--EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A DL +K VVI+ +YV + + D+ FIL Sbjct: 434 SFDAPDLPDDQKHVVINQDYVSGKLKGIIEDKDLSRFIL 472 >gi|322434047|ref|YP_004216259.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp. MP5ACTX9] gi|321161774|gb|ADW67479.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp. MP5ACTX9] Length = 545 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 223/529 (42%), Positives = 322/529 (60%), Gaps = 98/529 (18%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+ELD+Y++GQ AKRAVAIALRNR RRQ+LP DL D++MPKNI+++GPTGVG Sbjct: 18 ELTPREIVAELDKYVVGQGAAKRAVAIALRNRMRRQKLPPDLADDIMPKNIIMIGPTGVG 77 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L +PF+KVE +KFTE+GYVGR+VE I+RDLV++AI++VRE + ++V ++ Sbjct: 78 KTEIARRLAKLTNSPFLKVEASKFTEVGYVGRDVESIVRDLVEIAIDLVREEKLEDVADK 137 Query: 126 ASINAEERILD--------------------------------------------ALVG- 140 A ++AE+R+LD A VG Sbjct: 138 AELHAEDRLLDLLLPPTPAAATAANAAAATEVAGTNVIQLPMQMDTESPEYVAPVADVGP 197 Query: 141 ---KTATSNTREVFRKKL----RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193 K + E R+KL R+G++ ++ ++I+V D + F G ++L Sbjct: 198 SEDKKHEPTSYERTREKLRQQFREGKLDERVVEIDVRDRNQPSFEFIAAPGQDESDMSLK 257 Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253 ++ + G R KK +M V + + L+++E RL+DMD V + +++ VE GIVFLDE D Sbjct: 258 DVLPGLFGQ-RTKKRKMKVAEAFDYLVQEEEGRLVDMDQVTKLAVERVEESGIVFLDEID 316 Query: 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 KI R+ G+G VSREGVQRD+LP+VEG++V+TKYG ++TDHILFIA+GAFHVS+P+DL+ Sbjct: 317 KIAGREGGHGPDVSREGVQRDILPIVEGTTVNTKYGMVSTDHILFIAAGAFHVSKPSDLI 376 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+QGRFP+RV L+SL DF ILT+ +S+L+ Q L++TEG+ L+FT +++ +A+ Sbjct: 377 PELQGRFPIRVELQSLTVGDFVRILTEPKSSLVKQSTALLETEGLKLEFTPEALAEMAEF 436 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ------------------------- 408 A +N + +IGARRL T+MERVL++ISF A DL Sbjct: 437 AFKVNESTENIGARRLHTIMERVLDEISFQAPDLMKNAKGESSEEGVVGQVGHSAPLGGE 496 Query: 409 --------------------EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 EK +V+D EYVR + D+ +IL Sbjct: 497 VRPDSPPLPVIERRKEDGTVEKVIVVDPEYVRQQVAGIVKNQDLSRYIL 545 >gi|302389652|ref|YP_003825473.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter oceani DSM 16646] gi|302200280|gb|ADL07850.1| heat shock protein HslVU, ATPase subunit HslU [Thermosediminibacter oceani DSM 16646] Length = 469 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/469 (45%), Positives = 317/469 (67%), Gaps = 39/469 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IV ELD+YI+GQ++AK+ VAIALRNR+RRQ+L +L++E+MPKNIL++GPTGVG Sbjct: 3 DLTPRKIVEELDKYIVGQEEAKKCVAIALRNRYRRQKLSKELQEEIMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ +I +V+ + ++V+++ Sbjct: 63 KTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVETSIRMVKMEKIEQVKDR 122 Query: 126 ASINAEERI-----------------LDALVGKTA-----------------TSNTREVF 151 A A+ RI L+AL G + R+ Sbjct: 123 ARELADLRIAEILQPDPVKTTNFRNPLEALFGNLSKVDFDEKDEEYESRIKIAREKRKAL 182 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 + ++ G++ ++ I+IEV D S + F G +GI N +LF ++ R+KK ++ Sbjct: 183 LEDIKSGKLDNEMIEIEVEDNSPPVLEVFSNSGIEEMGI-NFQDLFGGIL-PKRRKKKKL 240 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++ + ++E+ +LIDMD V ++I+ E GI+F+DE DKI R+ G VSREG Sbjct: 241 TIATARKIMTQEEAQKLIDMDEVVTEAIKRAEETGIIFIDEIDKIAGREQSTGPDVSREG 300 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEG +V TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV LKSL+ Sbjct: 301 VQRDILPIVEGCTVVTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVELKSLS 360 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K D + IL + +++LI QYK L++TEGI + FTED+ID + AV +N +IGARRL Sbjct: 361 KEDLKRILVEPKNSLIKQYKALLETEGIKIHFTEDAIDEIVSSAVYVNQQNENIGARRLH 420 Query: 391 TVMERVLEDISFSASDLQEKT--VVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LEDISF+AS+++ + VVID YV + D + D+ +IL Sbjct: 421 TIMEKLLEDISFNASEIRAEVSEVVIDRSYVSEKLRDIVKDKDLSMYIL 469 >gi|195953180|ref|YP_002121470.1| ATP-dependent protease ATP-binding subunit HslU [Hydrogenobaculum sp. Y04AAS1] gi|195932792|gb|ACG57492.1| heat shock protein HslVU, ATPase subunit HslU [Hydrogenobaculum sp. Y04AAS1] Length = 437 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/440 (45%), Positives = 308/440 (70%), Gaps = 12/440 (2%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 +L N +P+EIV+ LD+YIIGQQ+AK+ VAIALRNRWRRQ+LP +RDE+ PKNIL++GP Sbjct: 6 ELLKNLTPKEIVNYLDQYIIGQQEAKKQVAIALRNRWRRQKLPPHIRDEVSPKNILMIGP 65 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA L APF+KVE TK+TE+GYVGR+VE +IR+LV+++ +V++ R D Sbjct: 66 TGVGKTEIARRLANLIKAPFLKVEATKYTEVGYVGRDVESMIRELVNISYQLVKKERTDG 125 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 V++ A A ++ + S + ++ ++ G+ D+ I+I++ + S + Sbjct: 126 VKDVAREEAIRKVAQKISSLKNVSISEAIY--GIKSGKYDDELIEIDIQEKQS------M 177 Query: 182 PGGASVGILNLSELFSKVM----GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 P +G+ L +L ++ G G ++K ++ V+ L ++ ++ ID + + ++ Sbjct: 178 PAIEVMGLQGLEDLDKQIRNLLGGIGGRRKKKLKVKDALNILEQEAAEEFIDKEDLESEA 237 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 + + EN+GIVF+DE DKI + G G VSREGVQRDLLP+VEG++V+TKYG + TDHIL Sbjct: 238 VFLAENFGIVFIDEIDKIAVKHEGVGHSVSREGVQRDLLPIVEGTTVNTKYGPVKTDHIL 297 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIA+GAFH+++P+DL+PE+QGRFP+RV LK+L DF IL + ++ L QYKEL+KTE Sbjct: 298 FIAAGAFHMAKPSDLVPELQGRFPIRVELKALTMEDFERILREPQNALTKQYKELLKTEN 357 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + +DFT+++I +A +A +NS +IGARRL T+ME+++EDISF+A D++ + ++ID + Sbjct: 358 VDIDFTDEAIKEIARIAEYINSKDENIGARRLYTIMEKLVEDISFNAPDMEGQHIIIDDK 417 Query: 418 YVRLHIGDFPSETDMYHFIL 437 +V + D + ++ +IL Sbjct: 418 FVLSRLEDLAKDPEISKYIL 437 >gi|52080218|ref|YP_079009.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus licheniformis ATCC 14580] gi|52785595|ref|YP_091424.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus licheniformis ATCC 14580] gi|81825306|sp|Q65JN3|CLPY_BACLD RecName: Full=ATP-dependent protease ATPase subunit ClpY gi|52003429|gb|AAU23371.1| two-component ATP-dependent protease (N-terminal serine protease) [Bacillus licheniformis ATCC 14580] gi|52348097|gb|AAU40731.1| ClpY [Bacillus licheniformis ATCC 14580] Length = 467 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQ DAK+AVA+ALRNR+RR L LR+E++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVERLDQYIVGQLDAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+ A Sbjct: 66 TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125 Query: 127 SINAEERILDALV-GKTATS------------------------------NTREVFRKKL 155 NA +R++ LV G+ + N R+ +L Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + +N+ + S +M +KK+ +++V+ Sbjct: 186 ALGELEDHYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLM-PKKKKRRKLTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD ++++Q E GI+F+DE DKI A+ SG + VSREGV Sbjct: 243 EARKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKI-AKKSGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+ Sbjct: 302 QRDILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSI 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ L+ QYK L+KTEGI L+F++D+I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LE++SF A D+ + VVI +YV +G D+ FIL Sbjct: 422 ILERLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467 >gi|119357347|ref|YP_911991.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium phaeobacteroides DSM 266] gi|119354696|gb|ABL65567.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium phaeobacteroides DSM 266] Length = 495 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/475 (45%), Positives = 314/475 (66%), Gaps = 51/475 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P +IV+ LD+YIIGQ +AK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 29 HLTPNQIVALLDKYIIGQSEAKKSVAIALRNRLRRQNVGDELRDEIMPNNIIMIGPTGVG 88 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++A APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EVRE+ Sbjct: 89 KTEIARRLAKMAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRTEKSEEVREK 148 Query: 126 ASINAEERILDALVGKTATSN-------------------------------TREVFRKK 154 A++ EER+LD L+ + S+ +R+ ++ Sbjct: 149 AAVLVEERLLDILLPPVSHSHEEQEDRDAENEEMQVFDASQEVDKAKENNRKSRKKMLER 208 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGAS--VGILNLSELFSKVMG---SG---RKK 206 LR G++ D++I++E+ D PGG G + E +M SG ++K Sbjct: 209 LRQGKLEDRQIEMEITG--------DAPGGMMQIFGPMGQMEEIGGIMQDLMSGLPRKRK 260 Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG--- 263 K R+S+ + L ++E +LIDMD V +++I VE GIVF+DE DKI A SG+G Sbjct: 261 KRRVSIAEARKILEQEEVQKLIDMDAVIKEAINKVEQSGIVFIDEIDKIAAPSSGSGGKG 320 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSREGVQRDLLP+VEGS+V+TKYG + TDH+LFIASGAFHV++P+DL+PE+QGRFP+R Sbjct: 321 PDVSREGVQRDLLPIVEGSNVATKYGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIR 380 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V LKSL + DF ILT ++ LI QYK L+KTEG+ L FT+ +I +A A +N +V + Sbjct: 381 VELKSLTEEDFYKILTQPKNALIKQYKALLKTEGVELSFTDGAILEIAKTAAKVNESVEN 440 Query: 384 IGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T+M +LE++ F+ ++ ++ + ID V+ + ++ D+ +IL Sbjct: 441 IGARRLHTIMTNLLEELMFNIPENVTDEEIEIDETMVKEKLNHVAADRDLSQYIL 495 >gi|321315382|ref|YP_004207669.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis BSn5] gi|291484167|dbj|BAI85242.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. natto BEST195] gi|320021656|gb|ADV96642.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis BSn5] Length = 467 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 316/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQQ+AK+AVA+ALRNR+RR L L+DE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA Sbjct: 66 TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK S + F RK++ Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + + N+ + S +M +KK+ +M+V+ Sbjct: 186 ALGELEDYYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++Q E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEASKLIDMDEVSQEAVQRAEESGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF A D+ + + I +YV +G D+ FIL Sbjct: 422 ILERLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467 >gi|218885411|ref|YP_002434732.1| ATP-dependent protease ATP-binding subunit HslU [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226704521|sp|B8DPH7|HSLU_DESVM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|218756365|gb|ACL07264.1| heat shock protein HslVU, ATPase subunit HslU [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 483 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/483 (45%), Positives = 306/483 (63%), Gaps = 53/483 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PREIVSELD+YI+GQ AKR VA+A+RNRWRRQQL LRDE+ PKNI+++GPTGVG Sbjct: 3 NLTPREIVSELDKYIVGQNAAKRMVAVAMRNRWRRQQLDPALRDEIAPKNIIMMGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+ +PFIKVE TKFTE+GYVGR+VE ++RDL+++ I +VR ++VR + Sbjct: 63 KTEIARRLAKLSASPFIKVEATKFTEVGYVGRDVESMVRDLMEIGIALVRAEENEKVRVK 122 Query: 126 ASINAEERILDALVGKTAT----------------------------------------- 144 A AEER+LD L+ A Sbjct: 123 AEARAEERLLDLLLPGGAPQPAPAQGMGGLTFDLSASHSGGQAIPQPPAQADASQASPPT 182 Query: 145 ---------SNTREVFRKKLRDGEISDKEIDIEVADTSS-DISNFDIPGGASVGILNLSE 194 S+TRE R G++ D+E+D+EV ++ + +PG VG + + Sbjct: 183 GTGSAPDSRSSTREKLRTLWHGGKLDDREVDMEVEESGGPQVGVLSMPGLEDVGS-QVRD 241 Query: 195 LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254 +FSKV S R+K+ RM V+ + L ++E+DRLID D V + + VE GI+F+DE DK Sbjct: 242 MFSKVFPS-RRKRRRMKVRDAFNLLTQEEADRLIDHDRVSDLARERVEQTGIIFIDEIDK 300 Query: 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 I + + VSREGVQRDLLP+VEGS V+TKYG + TDHILFIA+GAFH S+P+DL+P Sbjct: 301 IASGSTQKSSDVSREGVQRDLLPIVEGSVVNTKYGMVRTDHILFIAAGAFHFSKPSDLIP 360 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+QGRFP+R L +L K DF ILT+ + L QY L++TEG+ ++FT D++ +A A Sbjct: 361 ELQGRFPLRAELSALGKDDFLRILTEPHNALTRQYTALLQTEGVHIEFTGDALREIAAFA 420 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434 N+ +IGARRL T++E++L D+SF A D V +D++YVR H+ D + D+ Sbjct: 421 EETNAQTENIGARRLYTILEKILADLSFEAPDRSGDRVTVDSDYVREHLADVRANKDLSR 480 Query: 435 FIL 437 +IL Sbjct: 481 YIL 483 >gi|158522506|ref|YP_001530376.1| ATP-dependent protease ATP-binding subunit [Desulfococcus oleovorans Hxd3] gi|238686894|sp|A8ZW65|HSLU_DESOH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|158511332|gb|ABW68299.1| heat shock protein HslVU, ATPase subunit HslU [Desulfococcus oleovorans Hxd3] Length = 456 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/457 (46%), Positives = 306/457 (66%), Gaps = 28/457 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P EIV ELD+YI+GQ AKR+VAIALRNRWRR+Q+P +R+E+ PKNI+L+GPTGVG Sbjct: 3 DLTPAEIVIELDKYIVGQAKAKRSVAIALRNRWRRRQVPEAMREEIAPKNIILIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL +PF+K+E +KFTE+GYVGR+VE ++RDLV++ + ++ S R+ VRE+ Sbjct: 63 KTEIARRLARLTDSPFLKIEASKFTEVGYVGRDVESMVRDLVELTVTHLKVSEREAVREK 122 Query: 126 ASINAEERILDALVGKTATS-----------------------NTREVFRKKLRDGEISD 162 A AEERILD L+ + +TRE R LR G++ D Sbjct: 123 AVRLAEERILDVLLPRPEGPQRADGDEPLGSHIEIVSDDDGRVSTREKLRTMLRAGKLKD 182 Query: 163 KEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 + +D+E+AD S + F G +G+ N ++F+ ++ +K++ + E++ Sbjct: 183 RYVDLELADRSMPMVEIFSNSGLEEMGV-NFKDMFAGLLPKNKKRRKVKVPEAL--EMLT 239 Query: 222 DE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 DE + L+DMD V R +++ VE GI+FLDE DKIVA G+G VSREGVQRDLLP+VE Sbjct: 240 DEEAQNLVDMDRVVRMAVEKVEQSGIIFLDEIDKIVATSKGSGPDVSREGVQRDLLPIVE 299 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V TK+G++ TDHILFIASGAFH+ +P+DL+PE+QGRFP+RV L +L K +F IL + Sbjct: 300 GSTVMTKHGAVKTDHILFIASGAFHMCKPSDLIPELQGRFPIRVELDALGKEEFFRILIE 359 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 E+ L+LQY EL++TEG+ + F ++++ +A +A +N+ +IGARRL T+ME +LED+ Sbjct: 360 PENALLLQYIELLRTEGVDVAFADEAVREIAAMAEEVNAGTENIGARRLHTLMEYLLEDL 419 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A D V ID YV + D+ FIL Sbjct: 420 LFDAPDRAGTKVAIDRAYVTDRLKTIRGNEDLSRFIL 456 >gi|16078679|ref|NP_389498.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus subtilis subsp. subtilis str. 168] gi|221309491|ref|ZP_03591338.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. subtilis str. 168] gi|221313816|ref|ZP_03595621.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318740|ref|ZP_03600034.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. subtilis str. JH642] gi|221323011|ref|ZP_03604305.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. subtilis str. SMY] gi|729777|sp|P39778|CLPY_BACSU RecName: Full=ATP-dependent protease ATPase subunit ClpY gi|535350|gb|AAB03371.1| CodX [Bacillus subtilis subsp. subtilis str. JH642] gi|2633988|emb|CAB13489.1| two-component ATP-dependent protease (ATPase and chaperone) [Bacillus subtilis subsp. subtilis str. 168] Length = 467 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 316/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQQ+AK+AVA+ALRNR+RR L L+DE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L+GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + +EV+EQA Sbjct: 66 TEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNEVKEQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK S + F RK++ Sbjct: 126 EENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + + N+ + S +M +KK+ +M+V+ Sbjct: 186 ALGELEDYYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSGLM-PKKKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++Q E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEASKLIDMDEVGQEAVQRAEESGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF A D+ + + I +YV +G D+ FIL Sbjct: 422 ILERLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467 >gi|217077876|ref|YP_002335594.1| ATP-dependent protease ATP-binding subunit HslU [Thermosipho africanus TCF52B] gi|226704532|sp|B7IE26|HSLU_THEAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|217037731|gb|ACJ76253.1| heat shock protein HslVU, ATPase subunit HslU [Thermosipho africanus TCF52B] Length = 459 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/456 (44%), Positives = 313/456 (68%), Gaps = 28/456 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IV ELD+YI+GQ AK+AVAIA+RNR RRQ+L + + E+ PKNIL++GPTGVGK Sbjct: 7 LTPKQIVEELDKYIVGQSKAKKAVAIAIRNRIRRQKLSEEWKKEITPKNILMIGPTGVGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+G+PF+K+E T+FTE+GYVG+NV+ +IR+LV++A+N+V++ + EV E+A Sbjct: 67 TEIARRLAQLSGSPFLKIEATRFTEVGYVGKNVDSMIRELVEIAVNMVKQQKMKEVEEKA 126 Query: 127 SINAEERILDALV--GKTATSNTREVFRKKLR-----------------------DGEIS 161 +N EERILDALV K +F ++ GE+ Sbjct: 127 KLNVEERILDALVPMKKKTQIPFANIFGMQMEKPQQTDDYSENLRKREELRRRLRSGELD 186 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 ++EI+IE+ ++S I +P +G ++LS + + +K++ +M + + L+ Sbjct: 187 NEEIEIEIETSNSPIGFIGLPEMEDIG-MDLSNVIGNIFPKQKKRR-KMKISEAKKVLLP 244 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 E ++LIDMD + ++++ +N GI+F+DE DKI A+ +G VSR+GVQRDLLP+VEG Sbjct: 245 IEEEKLIDMDETIQTALELAQNRGIIFIDEMDKIAAKTGSSGQDVSRQGVQRDLLPIVEG 304 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 ++++TKYG + TD+ILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L + DF IL + Sbjct: 305 TTITTKYGPVKTDYILFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLKEEDFVRILVEP 364 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 E+ L QY+ L+ TE + L+FT+D I LA V+ LN + +IGARRL TV+E+VLED+ Sbjct: 365 ENALTKQYQALLYTENVQLEFTDDGIKELARVSYKLNQKLENIGARRLYTVLEKVLEDVL 424 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A +++EK +++DA+YV + + D+ +IL Sbjct: 425 FEAPEIEEK-IIVDADYVTKKLKGIIEDEDLTSYIL 459 >gi|319646003|ref|ZP_08000233.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp. BT1B_CT2] gi|317391753|gb|EFV72550.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus sp. BT1B_CT2] Length = 467 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQ +AK+AVA+ALRNR+RR L LR+E++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVERLDQYIVGQLNAKKAVAVALRNRYRRSLLDEKLREEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPF+K+E TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+ A Sbjct: 66 TEIARRIAKLVGAPFVKIEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNEVKGIA 125 Query: 127 SINAEERILDALV-GKTATS------------------------------NTREVFRKKL 155 NA +R++ LV G+ + N R+ +L Sbjct: 126 EENANKRLVRLLVPGRKKQTGAKNPFEMLFGGNQDQETGEAEKQEDADIENNRKRIAHQL 185 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + S FD+ G+ + +N+ + S +M +KK+ +++V+ Sbjct: 186 ALGELEDHYVTVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSLM-PKKKKRRKLTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD ++++Q E GI+F+DE DKI A+ SG + VSREGV Sbjct: 243 EARKVLTNEEAAKLIDMDEAAQEAVQRAEQSGIIFIDEIDKI-AKKSGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYG++ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L+ Sbjct: 302 QRDILPIVEGSTVMTKYGAVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELQKLSI 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ L+ QYK L+KTEGI L+F++D+I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILTEPDNALLKQYKALLKTEGISLEFSDDAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LE++SF A D+ + VVI +YV +G D+ FIL Sbjct: 422 ILERLLEELSFEAPDVTMEEVVITPQYVEEKLGSIAKNKDLSQFIL 467 >gi|78186793|ref|YP_374836.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium luteolum DSM 273] gi|78166695|gb|ABB23793.1| Heat shock protein HslU [Chlorobium luteolum DSM 273] Length = 482 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 217/466 (46%), Positives = 310/466 (66%), Gaps = 35/466 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P +IVS LD+YIIGQ+DAK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 18 HLTPHQIVSLLDKYIIGQKDAKKSVAIALRNRLRRQMVGDELRDEIMPNNIIMIGPTGVG 77 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EVRE+ Sbjct: 78 KTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 137 Query: 126 ASINAEERILDALV-----------------------------GKTATSNTREVFRKKLR 156 A+ E+R+LD L+ + A TRE R++LR Sbjct: 138 AASLVEDRLLDILLPPVQASAEQEESFPEDGEEGALLTTGEERAEDANRRTREKMRQRLR 197 Query: 157 DGEISDKEIDIEVA-DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 G++ +++I+++V+ D+ + P G I + + + RKK+ R+S+ Sbjct: 198 GGKLEERQIEMDVSGDSQGGMMQIFGPLGQMEEIGGIMQDLMSGLPRKRKKR-RVSIADA 256 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQ 272 L ++E +LIDMD+V +++I VE GIVF+DE DKI A +G G VSREGVQ Sbjct: 257 RRILEQEEVQKLIDMDSVVKEAITKVEQSGIVFIDEIDKIAAPSTGAGTKGPDVSREGVQ 316 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + Sbjct: 317 RDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEE 376 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF LILT + LI QY+ L+ TEG+ L+FTE SI +A A +N +V +IGARRL T+ Sbjct: 377 DFFLILTQPRNALIKQYRALIGTEGVELEFTEGSIREIARTAAVVNESVENIGARRLHTI 436 Query: 393 MERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 M +LE++ F +L + ID + V+ + S+ D+ +IL Sbjct: 437 MTNLLEELMFDIPENLSSGKITIDEKMVKDKLSHVASDRDLSQYIL 482 >gi|299536756|ref|ZP_07050064.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus fusiformis ZC1] gi|298727768|gb|EFI68335.1| ATP-dependent protease ATP-binding subunit HslU [Lysinibacillus fusiformis ZC1] Length = 466 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/465 (44%), Positives = 307/465 (66%), Gaps = 36/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+I LDRYI+GQ +AKRAVAIALRNR+RR L D++ E++PKNIL++GPTGVG Sbjct: 5 NLTPRQITEHLDRYIVGQNEAKRAVAIALRNRYRRSLLNEDMKAEVIPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ + +V+E + V+EQ Sbjct: 65 KTEIARRIAKLTNAPFVKVEATKFTEVGYVGRDVESMVRDLVEASHRLVKEEMMESVKEQ 124 Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------RKK-------L 155 A A E I+ LV K A N E+ R K L Sbjct: 125 AEELANEAIVKLLVPSLRKKQAMQNPFEMLFGGKEQPTNDDSSADDGEVRSKRAQIAIDL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---NLSELFSKVMGSGRKKKIRMSV 212 R+G++ ++ + +EV + + I FD G + + + ++ S +M +KK+ R+ V Sbjct: 185 RNGKLENEWVTVEVTEQNPSI--FDALQGTGMDMSANSGMQDMLSSLMPKKQKKR-RVQV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L +E+++LID D V +++I E GI+F+DE DKI +++ VSREGVQ Sbjct: 242 KDARRILTIEEANKLIDADEVAQEAINRAEQTGIIFIDEIDKIASKEGNTSANVSREGVQ 301 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V+TKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L K Sbjct: 302 RDILPIVEGSTVTTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEKLTKQ 361 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + + +LILQYK L++TEG+ + FT D+I+ +A++A +N +IGARRL T+ Sbjct: 362 DFVRILQEPDQSLILQYKALLETEGVEIHFTTDAIERIAEIATEVNQETDNIGARRLHTI 421 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ER+LE++SF AS++ ++ I+A YV + D+ FIL Sbjct: 422 LERLLEELSFEASEIAPASIPINAAYVDQKLAGIVKNKDLSQFIL 466 >gi|295706290|ref|YP_003599365.1| heat shock protein HslVU ATPase subunit HslU [Bacillus megaterium DSM 319] gi|294803949|gb|ADF41015.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium DSM 319] Length = 466 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/470 (44%), Positives = 310/470 (65%), Gaps = 39/470 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + + +PR+IV +LD+YIIGQ AK+AVA+ALRNR+RR L LRDE++PKNIL++GPT Sbjct: 1 MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V Sbjct: 61 GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120 Query: 123 REQASINAEERILDALVG-------------------------------KTATSNTREVF 151 R++A NA +RI++ LV +T + R+ Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209 +L GE+ + + IEV + S FD+ G+ + + N+ + S M +KK+ + Sbjct: 181 AHQLALGELENHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNFMPKKQKKR-K 237 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VS 267 ++V+ L +E+ +LIDMD V ++++ E YGI+F+DE DKI A+ SGN VS Sbjct: 238 LTVKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKI-AQKSGNSSSADVS 296 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 297 REGVQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELT 356 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L DF IL + ++ L+ QY L++TEGI ++F++D+I +A++A +N +IGAR Sbjct: 357 KLTVEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGAR 416 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++ER+LED+SF A ++ + +VI +YV + D+ FIL Sbjct: 417 RLHTILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466 >gi|89895295|ref|YP_518782.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium hafniense Y51] gi|89334743|dbj|BAE84338.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 435 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/422 (48%), Positives = 297/422 (70%), Gaps = 29/422 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PRE V ELDRYI+GQ AKRAVAIALRNR+RR LP +++E++PKNIL++GPTGVG Sbjct: 3 QLTPRETVRELDRYIVGQNQAKRAVAIALRNRYRRSLLPEGMQEEVLPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE I+RDLV++++ +V+ + +EV Q Sbjct: 63 KTEIARRLAKLVRAPFLKVEATKFTEVGYVGRDVESIVRDLVEISLRMVKAEKMEEVEIQ 122 Query: 126 ASINAEERILDALV-GKTATSNTREVF-------------------------RKKLRDGE 159 A+ AE+R+ LV GK +N+ F R++L GE Sbjct: 123 AAQAAEKRLEALLVPGKRQENNSSNPFQFLFNQGQEKEETVTPEIERDRTFIRERLHRGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + ++ I++EV D + +F + G + NL ++ + ++ R K+ +++V++ L Sbjct: 183 LDEQVIEVEVEDNQPLLPDF-LGTGMEINT-NLQDMMAGMLPKKRHKR-KVTVREARRIL 239 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ +LID D +++I+ VE G+VFLDE DKI RD +G VSR GVQRD+LP+V Sbjct: 240 TTEEAQKLIDHDEAVQEAIRRVEQEGMVFLDEIDKIAGRDGASGPDVSRGGVQRDILPIV 299 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+++TKYG + TDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL+ DF+ ILT Sbjct: 300 EGSTINTKYGPVKTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELESLSIEDFQRILT 359 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + +S+LI QY L++TEGI ++FTE++ID LA VA +NS +IGARRL T++ERVLE+ Sbjct: 360 EPQSSLIKQYSALLETEGIKVEFTENAIDELAKVAYEVNSNTENIGARRLHTIVERVLEE 419 Query: 400 IS 401 +S Sbjct: 420 LS 421 >gi|124004895|ref|ZP_01689738.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina ATCC 23134] gi|123989573|gb|EAY29119.1| heat shock protein HslVU, ATPase subunit HslU [Microscilla marina ATCC 23134] Length = 470 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/466 (44%), Positives = 307/466 (65%), Gaps = 36/466 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELD+YIIGQ DAK+ VAIALRNRWRR D+R E++P NIL++G TGVG Sbjct: 7 HLTPREIVAELDKYIIGQNDAKKQVAIALRNRWRRMNSADDMRQEIVPNNILMIGATGVG 66 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ AIN+V+ S+R+ V+E+ Sbjct: 67 KTEIARRLAKIADAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAINMVKASKRETVQER 126 Query: 126 ASINAEERILDALV------------------------------GKTATSNTREVFRKKL 155 A+ EE ILDAL+ + TR+ FR+K+ Sbjct: 127 ATEIVEEIILDALIPPVRDASAQNSFTGFTMDVTPDETSSMSKDDQELNEKTRDRFREKI 186 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R+GE+ +++I+I ++ PG + ++N+ E+ + ++ KK+ ++++ + Sbjct: 187 RNGEMDERKIEINISQNGMGNVGMVGPGMDEMAMMNIQEMINGMLPKKSKKR-KVTIAEA 245 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273 L+ +E ++LIDMD V ++++ EN G++F+DE DKI AR S G G VSREGVQR Sbjct: 246 RKILLEEEVNKLIDMDEVKEEALKKAENTGMIFIDEIDKI-ARGSSGGSGPDVSREGVQR 304 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 DLLP+VEGSS++TKYG + +DHILF+A+GAFHVS+P+DL+PE+QGRFP+RV L SL K D Sbjct: 305 DLLPIVEGSSINTKYGVLKSDHILFVAAGAFHVSKPSDLIPELQGRFPIRVELSSLTKED 364 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL + ++ L QY+ ++ EG+ L F +D+++ LA++A +N V +IGARRL TVM Sbjct: 365 FYQILKEPKNALTKQYEAMLHAEGVSLAFQDDALEQLAEMAYQINLEVENIGARRLHTVM 424 Query: 394 ERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +L D F D+ +++ + V+ + + D+ FIL Sbjct: 425 SHLLNDFLFDVPDVIGPNAKILVTKDMVQEKLAGLVQDKDLSQFIL 470 >gi|312898770|ref|ZP_07758159.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera micronuciformis F0359] gi|310620201|gb|EFQ03772.1| ATP-dependent protease HslVU, ATPase subunit [Megasphaera micronuciformis F0359] Length = 470 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 217/471 (46%), Positives = 305/471 (64%), Gaps = 45/471 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+EIV++L++YIIGQ AK++VA+ALRNRWRR++L A+L+ E++PKNILL+GPTGVG Sbjct: 6 NLTPKEIVAQLNKYIIGQDGAKKSVAVALRNRWRRKKLSAELQKEIIPKNILLIGPTGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV--RESRRDEVR 123 KT I+RRLA L GAPF+KVE TK+TE+GYVGR+VEQ+IRDL+ AI +V RESRR E Sbjct: 66 KTEIARRLADLTGAPFVKVEATKYTEVGYVGRDVEQMIRDLLTNAIRMVQERESRRFE-- 123 Query: 124 EQASINAEERILDALVGK----------------------------------TATSNTRE 149 E+A A RIL K T S R Sbjct: 124 EKAEAEANNRILQVFWPKKETVKEAVTDPVSFLFGNSEGEEEKKESDMPSETTGMSERRR 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKK 206 +++ GE D+EI++EVA+ + + G ++ + N F +++G+ +KK Sbjct: 184 QMAERIASGEWDDREIEVEVAEADRAVQGI-LTGNSTEELTNN---FQEMLGNLVPKKKK 239 Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266 K +M+V K +E +L+DMD + +I+ E GIVF+DEFDKI + NG V Sbjct: 240 KKKMTVAKARELFKEEELGKLLDMDIIIEKAIEATEETGIVFIDEFDKIAEKGRSNGPDV 299 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 300 SREGVQRDILPIVEGATVTTKYGPVKTDHILFIAAGAFHVSKPSDLIPELQGRFPIRVEL 359 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +SL DF+ ILT+ +L+ QY L+ + L+FTED ID +A+ A ++N +IGA Sbjct: 360 QSLTVEDFKRILTEPSQSLLKQYTALLGADNTELEFTEDGIDMMAEYAHHVNEETENIGA 419 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL T++ER+LEDISF + K + ID ++V +G ++ DM +IL Sbjct: 420 RRLHTILERILEDISFDTPYEEAKKIRIDRDFVSEKLGKVVTDVDMSRYIL 470 >gi|225181365|ref|ZP_03734809.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter alkaliphilus AHT 1] gi|225167946|gb|EEG76753.1| heat shock protein HslVU, ATPase subunit HslU [Dethiobacter alkaliphilus AHT 1] Length = 468 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/465 (44%), Positives = 312/465 (67%), Gaps = 36/465 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 ++PR+IV ELD+YI+GQ+DAK+ VA+ALRNR+RR++LP ++RDE+ PKNI+++GPTGVGK Sbjct: 6 WTPRQIVGELDKYIVGQRDAKKCVAVALRNRYRRKRLPDEIRDEVFPKNIIMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV+ + + V+E+A Sbjct: 66 TEIARRLAKLVNAPFVKIEATKFTEVGYVGRDVETMVRDLVETAIRIVQTEKMEGVKEKA 125 Query: 127 SINAEERILDALVG----KTATSN------------------------------TREVFR 152 + AEE +LD L + T+N ++ R Sbjct: 126 RVMAEESLLDLLAPAPKRQQQTNNPLSMLFPATDEEDSKDEEDDYNNRRQEHQENKQRLR 185 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 +KL G + D+ +++EV + + F G +GI N +L + +KK +M V Sbjct: 186 EKLAAGLLEDETVELEVDERPPMVEVFSGSGMEDMGI-NFQDLMGQFFPK-KKKMRKMPV 243 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L ++E+ +LIDMD V +++ E GI+FLDE DKI +D G+G VSREGVQ Sbjct: 244 SQARKILQQEEAQKLIDMDEVVGEAVTRAEQSGIIFLDEIDKIAGKDYGSGPDVSREGVQ 303 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS++ TKYG++ TD ILFIA+GAFHV++P+DL+PE+QGRFP+RV L +L+++ Sbjct: 304 RDILPIVEGSTIMTKYGAVKTDFILFIAAGAFHVAKPSDLIPELQGRFPIRVELDNLSEA 363 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF+ ILT+ + LI QY L++TEGI ++F ++I +A +A LN + +IGARRL T+ Sbjct: 364 DFQQILTEPANALIKQYTALLETEGIQVEFAPEAIAEIAKMARKLNDEMENIGARRLHTI 423 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E+VLE++SFSA +L + + I + YV+ + D D+ +IL Sbjct: 424 LEKVLEELSFSAPELGTQVIPITSRYVQDKLKDIVQNKDLSRYIL 468 >gi|153005547|ref|YP_001379872.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter sp. Fw109-5] gi|152029120|gb|ABS26888.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp. Fw109-5] Length = 465 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/462 (46%), Positives = 319/462 (69%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + SP+EIV+ELDR+++GQ AKRAVAIALRNRWRRQ++ +L+DE++PKNI+++GPTGVG Sbjct: 5 DLSPKEIVAELDRHVVGQGKAKRAVAIALRNRWRRQKVGPELKDEILPKNIVMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ ++RDLV+ A+ +V+E +++RE+ Sbjct: 65 KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDAMVRDLVEAAVKLVKEEEVEKLRER 124 Query: 126 ASINAEERILDALVG--------KTATSNTR--------------EVFRKKLRDGEISDK 163 A AEE++LDAL ++A S R E R +LR G + D Sbjct: 125 AREAAEEKVLDALGYGGGLGLGFRSAVSRVRGESEAEPPSQGGGRERARAQLRAGTLDDD 184 Query: 164 EIDIEVADTSSDISNFDIPGGASV--------GILNLSELFSKVMGSGRKKKIRMSVQKC 215 +++E+ + + F PG + G L + + S + G +K+K ++ V++ Sbjct: 185 AVEVELVEKPPPLP-FMAPGMEDMAQGLQDMMGQLGNNPIVSMLGGGPKKRKRKLKVKEA 243 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L ++E+ RL+DMD V R+++ +N GI+F+DE DKI RD+G+G VSR GVQRDL Sbjct: 244 LDLLTQEEAARLVDMDRVVREALDRAQNAGIIFIDEIDKIAGRDAGHGPDVSRGGVQRDL 303 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V+TKYG + TDH+LFIA+GAFHVS+ +DL+PE+QGRFP+RV L+ L + D Sbjct: 304 LPIVEGSNVNTKYGMVKTDHMLFIAAGAFHVSKVSDLIPELQGRFPIRVELEPLGREDLV 363 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + S+L+ QY L+ TEG+ + F +D+++ +A +A ++N + +IGARRL TVMER Sbjct: 364 RILREPRSSLVRQYTALLATEGVDVQFRDDAVEEIARIAADVNERMENIGARRLHTVMER 423 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +L+ ISF A DL+ + +V+DA YVR + + D+ +IL Sbjct: 424 LLDAISFDAPDLRGQRIVVDAAYVRERLAGIAEDEDLARYIL 465 >gi|218961141|ref|YP_001740916.1| molecular chaperone and ATPase component of HslUV protease [Candidatus Cloacamonas acidaminovorans] gi|167729798|emb|CAO80710.1| molecular chaperone and ATPase component of HslUV protease [Candidatus Cloacamonas acidaminovorans] Length = 454 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/450 (46%), Positives = 294/450 (65%), Gaps = 21/450 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ IV ELD+YIIGQ AKR VAIALRNRWRRQQ+ D++ E+MP NI+L+GPTG+GK Sbjct: 7 LTPKRIVEELDKYIIGQDQAKRCVAIALRNRWRRQQISGDIKGEIMPNNIILIGPTGIGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR++RL APFIKVE +KFTE+GYVGR+VE ++R+L++ A++ VRE+ +EVR +A Sbjct: 67 TEIARRISRLTNAPFIKVEASKFTEVGYVGRDVESMVRELMNYAVSQVREAMIEEVRPEA 126 Query: 127 SINAEERILDALVG-----KTATSNT-----------REVFRKKLRDGEISDKEIDIEVA 170 NA E ILD L+ K +NT RE RKKL G + +KEI++E Sbjct: 127 EKNATEMILDILLPRSKKMKQNANNTDTPEYERYLRSREKMRKKLLSGSLDEKEIEVE-- 184 Query: 171 DTSSDISNFDIPGGASVGILN--LSELFSKVM-GSGRKKKIRMSVQKCYPELMRDESDRL 227 + ++ NF+I G + +L+ +SE+ S + G G +K++ +V + + +E +RL Sbjct: 185 PETDNLPNFEIFPGPGLELLDFDISEMISNIFQGKGTPRKVKTTVHSAWKLYVENEINRL 244 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 I D + + VE GI+F+DE DKI D GI VSR GVQRDLLP+VEGS V TK Sbjct: 245 ISKDKLVETAKMAVEENGIIFIDEIDKIANTDKQVGIDVSRSGVQRDLLPIVEGSKVPTK 304 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG I+T HILFIA+GAF+ ++P+DL+PE+QGRFP+RV L SL + DF ILT+ E++L Sbjct: 305 YGMIDTSHILFIAAGAFNTAKPSDLIPELQGRFPIRVELNSLTQEDFERILTEPENSLTK 364 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ + ++EG+ L F ++I +A A N + DIGARRL TVM ++L+D F Sbjct: 365 QYQAIFRSEGVELKFMPEAIREIARFAALANEKMEDIGARRLHTVMNKLLDDFLFEMPSE 424 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K+V I + V H+ D+ FIL Sbjct: 425 TLKSVKITKKMVTEHLSPVIESEDLSRFIL 454 >gi|258514512|ref|YP_003190734.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum acetoxidans DSM 771] gi|257778217|gb|ACV62111.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum acetoxidans DSM 771] Length = 465 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/465 (46%), Positives = 307/465 (66%), Gaps = 35/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+ V+ELD+YI+GQ AK++V+IALRNR+RR +L D+RDE++PKNIL++GPTGVG Sbjct: 3 DLTPRQTVAELDKYIVGQNKAKKSVSIALRNRYRRSKLSEDMRDEILPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL+RL APFIK+E TKFTE+GYVGR+VE +IRDL++++I +VR + V E+ Sbjct: 63 KTEIARRLSRLVQAPFIKIEATKFTEVGYVGRDVESMIRDLLEISIRMVRREKMSLVEER 122 Query: 126 ASINAEERILDALVGKTAT-------------SNT-------------------REVFRK 153 A AEERI++ L A NT RE R+ Sbjct: 123 AQKIAEERIVELLAPMPAQEKQPRNPLEMLFGGNTQNEEESKSQQQYKKRIGFERETLRE 182 Query: 154 KLRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 KL GE+ + ++IEV D S + F G +GI N+ ++ +KKK R++V Sbjct: 183 KLSRGELEQEFVNIEVEDNGSPMLEVFSGSGMEEIGI-NVQDVLGGFF-PKKKKKRRVTV 240 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L + E+ LIDMD V +I+ E GI+FLDE DKI +DS G VSR GVQ Sbjct: 241 AEARKILTQQEAQNLIDMDEVTSQAIKRAEEQGIIFLDEIDKIAGKDSSGGPDVSRGGVQ 300 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG + TD++LFIA+GAFH+S+P+DLLPE+QGRFP+RV L+SL+++ Sbjct: 301 RDILPIVEGSTVMTKYGPVKTDYMLFIAAGAFHISKPSDLLPELQGRFPIRVELESLSEA 360 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + LI QY EL+ TEG+ + F+++S+ +A +A +N +IGARRL T+ Sbjct: 361 DFLQILTEPRNALIKQYTELLATEGVKIKFSQNSLVEIAKIAYTVNMQTENIGARRLHTI 420 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED SF A ++ +++ ID +YVR + D D+ +IL Sbjct: 421 LEKLLEDYSFEAPEISGQSIEIDEDYVRYKLKDVLLNEDLSRYIL 465 >gi|226227909|ref|YP_002762015.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas aurantiaca T-27] gi|226091100|dbj|BAH39545.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Gemmatimonas aurantiaca T-27] Length = 464 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/452 (46%), Positives = 302/452 (66%), Gaps = 22/452 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV+ELDRYI+GQ +AK+AVAIALRNRWRRQ+ P +R+E+ P NI+L+GPTGVG Sbjct: 15 ELTPRQIVAELDRYIVGQANAKKAVAIALRNRWRRQRAPESIREEISPNNIILIGPTGVG 74 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L+GAPF+KVE +KFTE+GYVGR+VE ++RDL++ AI++VR R EV + Sbjct: 75 KTEIARRLAKLSGAPFVKVEASKFTEVGYVGRDVESMVRDLIENAIDMVRTEREAEVEDL 134 Query: 126 ASINAEERILDALVGKTATSN-------------------TREVFRKKLRDGEISDKEID 166 AS ++RILD L+ + TRE + L DG++ +E++ Sbjct: 135 ASEKVDDRILDLLLPMPPVAQGDTPDVRAEYEAAVERHKRTREKLKALLLDGQLESRELE 194 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 +EV + + PG G+ ++++ F +M RKKK + V + L+ +E ++ Sbjct: 195 LEVTQSGPRMPGAATPG-VPEGMESVADWFRDMM-PKRKKKRTVKVSEARRILLDEELEK 252 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 LID+D V D+++ E GI+FLDE DKI AR G+G VSREGVQRDLLP+VEGS+V Sbjct: 253 LIDLDDVTSDALERAEAMGIIFLDEVDKIAGARGQGSGPDVSREGVQRDLLPIVEGSNVQ 312 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 TKYG + TDH+LF+A+GAFHV++P+DL+PE+QGRFP+RV L +L ++DF I+T+ E+ L Sbjct: 313 TKYGMVKTDHVLFVAAGAFHVAKPSDLIPELQGRFPIRVELDALTEADFVRIMTEPENAL 372 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 QY L++ EG L F ED + LA VA +N + +IGARRL TVM +LED+ + Sbjct: 373 TKQYTALVEAEGATLTFAEDGVAELARVAARVNERMENIGARRLHTVMTTLLEDVLYELP 432 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D + V++DA VR + + D+ +IL Sbjct: 433 DRGKDPVLVDATMVRDRLRAISEDEDLRKYIL 464 >gi|189500376|ref|YP_001959846.1| ATP-dependent protease ATP-binding subunit HslU [Chlorobium phaeobacteroides BS1] gi|189495817|gb|ACE04365.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium phaeobacteroides BS1] Length = 490 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/466 (46%), Positives = 310/466 (66%), Gaps = 38/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IVS LD+YIIGQQDAK+AVAIALRNR RRQ + DLRDE+MP NI+L+GPTGVGK Sbjct: 28 MTPSQIVSRLDKYIIGQQDAKKAVAIALRNRLRRQHVSDDLRDEIMPNNIILIGPTGVGK 87 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDL D A+++VR + +EV+E+A Sbjct: 88 TEIARRLAKLANAPFVKVEASKFTEVGYVGRDVESMIRDLTDQAVSMVRSEKSEEVKEKA 147 Query: 127 SINAEERILDALVG----------------------------KTATSNTREVFRKKLRDG 158 ++ AEER+LD L+ K +RE ++LR G Sbjct: 148 ALLAEERLLDILLPPVPGSAYDSDNDDEEITSTEEASDADLEKAVNRKSREKMLERLRSG 207 Query: 159 EISDKEIDIEV-ADTSSDISNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKC 215 + D++I++E+ +D+ + P G + L L +M ++K R+++ + Sbjct: 208 RMEDRQIEMELSSDSQGGMMQIFGPMGQ---MEELGGLMQDLMSGLPKKRKNRRVTIAEA 264 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN---GIGVSREGVQ 272 L ++E +LIDMD V +++++ VE GIVF+DE DKI A +G+ G VSREGVQ Sbjct: 265 RKLLEQEEVQKLIDMDAVIKEAVKKVEESGIVFIDEIDKIAAPTTGSGGKGPDVSREGVQ 324 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL + Sbjct: 325 RDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSLTEE 384 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT ++ LI QYK L+ TEG+ L+F++D+I +A +A +N +V +IGARRL T+ Sbjct: 385 DFYKILTQPKNALIKQYKALLMTEGVTLEFSDDAIVEIAAIAAQVNESVENIGARRLHTI 444 Query: 393 MERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437 M +LE++ FS + + ID V + ++ D+ +IL Sbjct: 445 MTNLLEELMFSIPEQHSNEKIDIDKSMVNDKLSKIITDRDLSQYIL 490 >gi|300870913|ref|YP_003785784.1| ATP dependent protease HslVU/ClpYQ ATPase subunit [Brachyspira pilosicoli 95/1000] gi|300688612|gb|ADK31283.1| ATP dependent protease HslVU/ClpYQ, ATPase subunit [Brachyspira pilosicoli 95/1000] Length = 453 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/451 (44%), Positives = 306/451 (67%), Gaps = 18/451 (3%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 KL +PR IV LD+YIIGQ +AKR+VAIALRNR+RR+ LP +L+DE+ PKNI+L+GP Sbjct: 6 KLESELTPRRIVEALDQYIIGQTEAKRSVAIALRNRYRRRHLPEELKDEVAPKNIILIGP 65 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RRLA+L APFIKVE TK+TE+GYVGR+VE ++RDLV+ AI ++ S E Sbjct: 66 TGVGKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVNAAIFELKTSMMKE 125 Query: 122 VREQA--------------SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167 V ++A S+ E+ + + N +E +K++ +G+ + ++I Sbjct: 126 VEKEATDIALDKLAKLLLPSVKKEDNEIISDEEAEKKKNAKEQIKKRIANGDFDESYVEI 185 Query: 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDR 226 +++ + IPG + + +M +K KK+R+ K Y L+ + S+ Sbjct: 186 KISSNQGRMFGI-IPGMGFEENDMIQSMVGSIMPQNKKNKKLRVKEAKKY--LINEASES 242 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 LIDM+ V D++ + EN GI+FLDE DKI + + + V+R GVQRDLLP+VEG++V+T Sbjct: 243 LIDMEKVTSDALSLAENMGIIFLDEIDKIASGNKTDSADVARHGVQRDLLPIVEGTTVNT 302 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 KYG I TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV LK+L+K DF+ IL + ++ + Sbjct: 303 KYGPIKTDHILFIAAGAFHINKPSDLIPELQGRFPIRVELKALSKEDFKDILINPKNAIT 362 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+EL+KTEG+ ++F +++++ +AD+A N+N+ V +IGARRL T+ME+V E+ISFSA + Sbjct: 363 KQYQELLKTEGVTIEFEDEALEKIADLAYNINTNVENIGARRLYTIMEKVFEEISFSADE 422 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + I ++ V+ + D D+ +IL Sbjct: 423 HSGEFIKITSDNVKEAVKDIEENRDISRYIL 453 >gi|302338073|ref|YP_003803279.1| heat shock protein HslVU, ATPase HslU [Spirochaeta smaragdinae DSM 11293] gi|301635258|gb|ADK80685.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta smaragdinae DSM 11293] Length = 447 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/455 (46%), Positives = 310/455 (68%), Gaps = 26/455 (5%) Query: 1 MKLTFN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59 MK F+ +PR+IV+ELD+YI+GQ+ AK+AVAIALRNR RR+ L +LRDE+ PKNI+++ Sbjct: 1 MKQDFDTMTPRQIVTELDKYIVGQEKAKKAVAIALRNRVRRRMLAENLRDEIAPKNIIMI 60 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTGVGKT I+RRL+RL+GAPFIKVE TK+TE+GYVGR+VE ++RDL+ V++N+V+ Sbjct: 61 GPTGVGKTEIARRLSRLSGAPFIKVEATKYTEVGYVGRDVESMVRDLMAVSLNMVKAEMS 120 Query: 120 DEVREQ--------------ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165 + V+E+ I + + + G+ AT RE FR LR+G++ DK + Sbjct: 121 EGVKEEAENRAEEALLDLLLPGIGGDPSVPEVGGGQGAT---REKFRTMLREGKLDDKLV 177 Query: 166 DIEVADTSS---DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 +++V+ S ++ + P V NL +F G G+K+K R+ V++ L+ + Sbjct: 178 EVQVSGGSFPTIEVFSGQSPEAMDVNFGNLGSIF----GGGKKRK-RVRVEQAKKILLDE 232 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 E D+LID + + + E GI+F+DE DK+ + G VSREGVQRD+LP+VEGS Sbjct: 233 EMDKLIDTERAGDIARERCEQMGIIFIDEIDKVAVKSDQGGADVSREGVQRDILPIVEGS 292 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +V+TKYG I+T HILFIA+GAFH S+P+DL+PE+QGRFP+RV L L+ DF ILT+ E Sbjct: 293 TVNTKYGMIDTSHILFIAAGAFHTSKPSDLIPELQGRFPLRVELDDLDADDFVRILTEPE 352 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + L QY EL+KTEG+ ++FT+ +I L+++A +N+ +IGARRL T+ME +LE++SF Sbjct: 353 NALTRQYIELLKTEGVDIEFTDPAIRKLSEIAAEVNARTENIGARRLHTIMELLLEEVSF 412 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +A +L+ + + I EYV +GD + D+ +IL Sbjct: 413 TAPELKGQKIPITPEYVESQLGDIVQDQDLARYIL 447 >gi|294500944|ref|YP_003564644.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium QM B1551] gi|294350881|gb|ADE71210.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus megaterium QM B1551] Length = 466 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/469 (43%), Positives = 308/469 (65%), Gaps = 37/469 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + + +PR+IV +LD+YIIGQ AK+AVA+ALRNR+RR L LRDE++PKNIL++GPT Sbjct: 1 MNSHLTPRQIVEKLDQYIIGQTKAKKAVAVALRNRYRRGLLDESLRDEVVPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + + V Sbjct: 61 GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKEEKMNGV 120 Query: 123 REQASINAEERILDALVG-------------------------------KTATSNTREVF 151 R++A NA +RI++ LV +T + R+ Sbjct: 121 RDRAEENANKRIVELLVPSKKKQQSFKNPFEMIFSNGTQSSDADPDQDEETNIATKRKQI 180 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIR 209 +L GE+ + + IEV + S FD+ G+ + + N+ + S M +KK+ + Sbjct: 181 AHQLALGELENHYVTIEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSNFMPKKQKKR-K 237 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSR 268 ++V+ L +E+ +LIDMD V ++++ E YGI+F+DE DKI + + + VSR Sbjct: 238 LTVKDARKVLTNEEAQKLIDMDEVTQEAVNRAEQYGIIFIDEIDKIAQKSANSSSADVSR 297 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS++ TKYG++ TDH+LF+A+GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 298 EGVQRDILPIVEGSTIVTKYGAVKTDHVLFVAAGAFHVSKPSDLIPELQGRFPIRVELTK 357 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF IL + ++ L+ QY L++TEGI ++F++D+I +A++A +N +IGARR Sbjct: 358 LTVEDFINILVEPDNALLKQYAALLETEGIQIEFSDDAIRKIAEIAYQVNQDTDNIGARR 417 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+SF A ++ + +VI +YV + D+ FIL Sbjct: 418 LHTILERLLEDLSFEAPEVTLEKIVITPQYVEEKLEKIAKNKDLSQFIL 466 >gi|228916466|ref|ZP_04080032.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843045|gb|EEM88127.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 453 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/458 (44%), Positives = 306/458 (66%), Gaps = 38/458 (8%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPTGVGKT ++RR Sbjct: 1 MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V+++A A + Sbjct: 61 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120 Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162 R+++ LV G T SN R+ +KL G + D Sbjct: 121 RLIEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 180 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219 + + IEV + S S FD+ G + + ++ F +GS + KK ++SV++ L Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 236 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+V Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LED Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS++ + + I +YV + D+ FIL Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453 >gi|228935143|ref|ZP_04097970.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947548|ref|ZP_04109838.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812068|gb|EEM58399.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824508|gb|EEM70313.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 453 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/458 (44%), Positives = 306/458 (66%), Gaps = 38/458 (8%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPTGVGKT ++RR Sbjct: 1 MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V+++A A + Sbjct: 61 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120 Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162 R+++ LV G T SN R+ +KL G + D Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 180 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219 + + IEV + S S FD+ G + + ++ F +GS + KK ++SV++ L Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 236 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+V Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LED Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS++ + + I +YV + D+ FIL Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453 >gi|124516258|gb|EAY57766.1| Heat shock protein HslU [Leptospirillum rubarum] gi|206603099|gb|EDZ39579.1| Heat shock protein HslU [Leptospirillum sp. Group II '5-way CG'] Length = 444 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 208/437 (47%), Positives = 295/437 (67%), Gaps = 8/437 (1%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 F ++P +IV LDRYIIGQ DAK+AVA+A+RNR RR+++ +++E++P+NIL++G TG Sbjct: 13 AFPWTPGDIVRYLDRYIIGQGDAKKAVAVAIRNRVRRERVSGPMKEEILPRNILMIGATG 72 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT I+RRL+RL APF+KVE TK+TE+GYVGRNVE +IRDL +VA N RD VR Sbjct: 73 SGKTEIARRLSRLLNAPFLKVEATKYTEVGYVGRNVESMIRDLAEVAYNEGLSRERDLVR 132 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 E A + ER+LDAL+ TR +L G++ D+E++I + +TS P Sbjct: 133 EDALKDVRERLLDALLPGGGQEATRSRLASRLDAGDLEDREVEILLRETSGGP-----PT 187 Query: 184 GASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G S E +++GS R+ + R++++ P L+ + +D +D V R+++ Sbjct: 188 GGSDWGEGSPEGMREMLGSILPPRQIRRRLAIRDARPLLLAEAADARVDAGKVSRETVAR 247 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VE GI+F+DE DK++ R G VSREGVQRDLLP+VEGSSV T++G + TD ILFIA Sbjct: 248 VEESGILFIDEIDKVIPRSGSVGADVSREGVQRDLLPIVEGSSVRTRHGIVRTDRILFIA 307 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAFH +RP+DL+PE QGRFPVRV L +L + ILT+TE +L+ QYK L++TEG+IL Sbjct: 308 AGAFHHARPSDLIPEFQGRFPVRVTLTALGSPELYRILTETEGSLVSQYKALLETEGVIL 367 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 DF ED + +A+VA +N +IGARRL TVME +LED+SF A ++ +TVVID +V+ Sbjct: 368 DFREDGLREIAEVAWQVNEGTQNIGARRLFTVMEHLLEDVSFRAPEMAGQTVVIDRPFVQ 427 Query: 421 LHIGDFPSETDMYHFIL 437 +G + D+ +IL Sbjct: 428 ERLGKLVLDPDLTRYIL 444 >gi|110597421|ref|ZP_01385708.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium ferrooxidans DSM 13031] gi|110340965|gb|EAT59436.1| heat shock protein HslVU, ATPase subunit HslU [Chlorobium ferrooxidans DSM 13031] Length = 494 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/469 (44%), Positives = 312/469 (66%), Gaps = 38/469 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +IV+ LD+YIIGQ++AK++VAIALRNR RRQ + +LRDE+MP NI+++GPTGVG Sbjct: 27 NLTPNQIVALLDKYIIGQKEAKKSVAIALRNRLRRQNVSDELRDEIMPNNIIMIGPTGVG 86 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA APF+KVE +KFTE+GYVGR+VE +IRDLVD ++ +VR + +EVRE+ Sbjct: 87 KTEIARRLAKLAKAPFVKVEASKFTEVGYVGRDVESMIRDLVDQSVAMVRSEKSEEVREK 146 Query: 126 ASINAEERILDALVGKTATSN-------------------------------TREVFRKK 154 A++ EER+LD L+ A S +R ++ Sbjct: 147 AALLVEERLLDILLPPVAQSQESLDDDAETEGEALLSLSTEEGDPSVEANRRSRRKMLER 206 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDI--PGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 LR G++ D++I+++++ SS I P G I + + + RKK+ R+S+ Sbjct: 207 LRSGKLEDRQIEMDISSDSSGGGMMQIFGPLGQMEEIGGMMQDLMSGLPRKRKKR-RVSI 265 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSRE 269 + L ++E +LIDM++V +++I VE GIVF+DE DKI A +G G VSRE Sbjct: 266 AEARKLLEQEEVQKLIDMESVVKEAINKVEQSGIVFIDEIDKIAAPSTGAGGKGPDVSRE 325 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRDLLP+VEGS+V+TK+G + TDH+LFIASGAFHV++P+DL+PE+QGRFP+RV LKSL Sbjct: 326 GVQRDLLPIVEGSNVATKHGMVKTDHVLFIASGAFHVAKPSDLIPELQGRFPIRVELKSL 385 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF LILT ++ LI QY L+ TEG+ L F+E +I +A +A +N +V +IGARRL Sbjct: 386 TEEDFFLILTQPKNALIKQYTALLATEGVELSFSEGAIREIARIAAKVNESVENIGARRL 445 Query: 390 QTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ +LE++ F+ ++ ++ + ID V+ + ++ D+ +IL Sbjct: 446 HTILTNLLEELMFNIPENVSDEKIEIDEAMVKEKLNHVVADRDLSQYIL 494 >gi|329929331|ref|ZP_08283084.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp. HGF5] gi|328936700|gb|EGG33143.1| ATP-dependent protease HslVU, ATPase subunit [Paenibacillus sp. HGF5] Length = 468 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/466 (43%), Positives = 316/466 (67%), Gaps = 36/466 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR L D RDE++PKNIL++GPTGVG Sbjct: 5 SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTEDERDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ R ++V+++ Sbjct: 65 KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124 Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156 A A ERI+ L G+ + N E+ R+++R Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184 Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 G++ D+ I+I+V D + ++ + F G +G +N+ E+F +M R K+ ++S Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L ++E+ +LIDMD V ++SI+ E GI+F+DE DK+ ++ +G VSREGV Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSL 362 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ L QY L++TE + ++F+ ++I +A +A ++N +IGARRL T Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHT 422 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+SF A +L +VI +YVR + + D+ +IL Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468 >gi|325971101|ref|YP_004247292.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta sp. Buddy] gi|324026339|gb|ADY13098.1| ATP-dependent hsl protease ATP-binding subunit hslU [Spirochaeta sp. Buddy] Length = 459 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/455 (45%), Positives = 303/455 (66%), Gaps = 31/455 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EIV ELD+YIIGQ+ AKR +A+A+RNR RR++LP ++RDE+ PKNI+++GPTGVGK Sbjct: 12 LKPSEIVKELDKYIIGQKQAKRTIAVAIRNRTRRKRLPLEIRDEVSPKNIIMIGPTGVGK 71 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L+ APFIKVE TK+TE+GYVGR+VE IIRDL+ +A+ V+ + E+ Sbjct: 72 TEIARRIAKLSNAPFIKVEATKYTEVGYVGRDVESIIRDLMSIAVQQVKAELAERELEKV 131 Query: 127 SINAEERILDAL--------------VGKTATSN---TREVFRKKLRDGEISDKEIDIEV 169 EER+LD L VG + T + TRE FR+ LRDG+ ++E++I V Sbjct: 132 QNRVEERLLDILLPQVKEDPSVDIIAVGSSYTDSQKVTRERFRQMLRDGKFDEREVEINV 191 Query: 170 ADTSSDISNFDIPGGASVGILNLSEL------FSKVMGSGRKKKIRMSVQKCYPELMRDE 223 G +G N+ EL + G+G+ +++V++ +E Sbjct: 192 QSRKR-------VGIEVLGQPNMEELQEAMQSIGSIFGNGKAHNRKLTVKRAREIFTEEE 244 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGS 282 +D+ +D D ++ + VE GIVF+DE DK+ + SG GI VSREGVQRD+LP++EG+ Sbjct: 245 TDKAVDTDRAIDEAKERVEQMGIVFIDEIDKVAKSGGSGGGIDVSREGVQRDILPIIEGT 304 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 SVSTK+G I+T HILFIASGAFHVS+P+DL+PE+QGRFP+RV L L DF ILT+ Sbjct: 305 SVSTKWGVIDTTHILFIASGAFHVSKPSDLIPELQGRFPLRVELDDLKADDFYRILTEPA 364 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + +QY+EL+KTEG+ + F +++I ++++A +NS+ +IGARRL T+ME++LE++SF Sbjct: 365 NAITMQYRELLKTEGVQIIFEDEAIRRISEIAYEVNSSHDNIGARRLFTIMEKLLEELSF 424 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SA +L +T+ I YV +GD D+ FIL Sbjct: 425 SADELTGQTIPITRAYVDERLGDVIQNQDLSKFIL 459 >gi|116328185|ref|YP_797905.1| ATP-dependent protease ATP-binding subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330909|ref|YP_800627.1| ATP-dependent protease ATP-binding subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120929|gb|ABJ78972.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124598|gb|ABJ75869.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 477 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/463 (45%), Positives = 314/463 (67%), Gaps = 35/463 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L ++R+E+ PKNI+++GPTGVGK Sbjct: 18 LTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVGK 77 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL +++N+V++ R +V E A Sbjct: 78 TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137 Query: 127 SINAEERILDALVG---------------KTATSN----------TREVFRKKLRDGEIS 161 AEE +LD L+ KT++++ TRE RKKL+ G++ Sbjct: 138 KQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKLD 197 Query: 162 DKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 D+E+++++ + S S I + G ++ +L V+G KK + K PE + Sbjct: 198 DQEVELDLPNPSVSQIPMLQVFGAGNLD--DLDNQLQNVLGDLLPKKNKKRKLKI-PEAI 254 Query: 221 RD----ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 + E+D+L+D D V R++++ VE GI+FLDE DKI R+ NG VSREGVQRDLL Sbjct: 255 KTLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLL 314 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF Sbjct: 315 PIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEK 374 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT S+L QY+ L+ T+GI L+F+ D I +A +A ++N +IGARRL T++ER+ Sbjct: 375 ILTAPRSSLARQYEALLFTDGIQLEFSSDGIQEIARIAYDMNEKHENIGARRLNTILERL 434 Query: 397 LEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LE++SF DL E K + ID +YV + + D+ +IL Sbjct: 435 LEEVSFEGPDLPENQKNIKIDGKYVMDRLQGVIQDKDLSQYIL 477 >gi|134299827|ref|YP_001113323.1| ATP-dependent protease ATP-binding subunit HslU [Desulfotomaculum reducens MI-1] gi|172044311|sp|A4J5Z5|HSLU_DESRM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|134052527|gb|ABO50498.1| heat shock protein HslVU, ATPase subunit HslU [Desulfotomaculum reducens MI-1] Length = 466 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/465 (44%), Positives = 317/465 (68%), Gaps = 36/465 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+ V ELD+YI+GQ+ AK+AVA+ALRNR+RR +L DL DE++PKNIL++GPTGVGK Sbjct: 4 LTPRQTVRELDKYIVGQEKAKKAVAVALRNRYRRSKLKEDLIDEVVPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+K+E TKFTE+GYVGR+VE ++RDLV+ +I ++++ + +EV E+A Sbjct: 64 TEIARRLAKLVKAPFVKIEATKFTEVGYVGRDVESMVRDLVETSIRMLKQEKVEEVEERA 123 Query: 127 SINAEERILDALVG----KTATSNT----------------------------REVFRKK 154 A+ERI++ L T T N RE R+K Sbjct: 124 KRLADERIIELLAPYPNRPTQTKNPFEMLFGGVQDTQQEDKSWEQQNSRIKFERETLREK 183 Query: 155 LRDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 + E+ ++IEV D S+ + F G +G+ N+ ++ + +K+K +++V+ Sbjct: 184 MSRCELEKDYLEIEVEDQSTPMLEVFSNSGVEEMGV-NMQDVLGSIFPR-KKRKRKVTVE 241 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272 + L + E+ +LIDMD + +++ E++GI+FLDE DKI R+ G VSR GVQ Sbjct: 242 EARKILTQQEAQKLIDMDELTAQAVKRAEDHGIIFLDEIDKIATREGTTGSADVSRGGVQ 301 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL++S Sbjct: 302 RDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHIAKPSDLIPELQGRFPIRVELESLSRS 361 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ +++LI QY EL+ TEG+ ++F+++S+ +AD+A +N +IGARRL T+ Sbjct: 362 DFEQILTEPQNSLIKQYTELLGTEGLKIEFSKNSLVEIADIAYTVNEQNENIGARRLHTI 421 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+SF A +L +++ ID++YVR + D + D+ +IL Sbjct: 422 LEKLLEDVSFEAPELNGQSLTIDSDYVREKLKDVVTNRDLSRYIL 466 >gi|145353738|ref|XP_001421162.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU) [Ostreococcus lucimarinus CCE9901] gi|145357168|ref|XP_001422793.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU) [Ostreococcus lucimarinus CCE9901] gi|144581398|gb|ABO99455.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU) [Ostreococcus lucimarinus CCE9901] gi|144583037|gb|ABP01152.1| ClpYQ (HslUV)-type protease, ATP-dependent subunit ClpY (HslU) [Ostreococcus lucimarinus CCE9901] Length = 542 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/444 (46%), Positives = 293/444 (65%), Gaps = 13/444 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P + LD++I+GQ +AKRA A+ALRNRWRR ++ +RDE++PKNIL++GPTG G Sbjct: 100 GLTPERATALLDKHIVGQTEAKRACAVALRNRWRRHRIGKPMRDEIVPKNILMIGPTGCG 159 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ +PF+KVE TKFTE+G+ GR+V+QIIRDLVD I + ++ R + + Sbjct: 160 KTEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIRDLVDNGIAVTKQKMRAKFEKF 219 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 E +ILD + G+ A TRE FR RDG + D+ I++E+ D+ D P G Sbjct: 220 VEELIENKILDFVCGEGANDETREAFRTLYRDGTLDDRTIEVELPDSGGQNMKID-PSGG 278 Query: 186 SVGILNLSELFSKVMGSGRK-KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 + I L K+ G+ + K +M+V +C P + E D L+ +T+ +++I VEN Sbjct: 279 PIPIHELVIKVDKLFGNRKSTSKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITAVEND 338 Query: 245 GIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVF+DE DKIV+ D +G S EGVQRDLLP++EGS VSTK+G++NTDHILFIASGA Sbjct: 339 GIVFIDEIDKIVSSSDYRHGADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFIASGA 398 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 FH ++P+D+L E+QGR P+RV LK L + D ILT+ E N+I Q K LMKTEGI L+FT Sbjct: 399 FHSAKPSDMLAELQGRLPIRVELKGLTERDLYRILTEPEMNMIAQQKALMKTEGIDLEFT 458 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV---------- 413 ++I+ +A +A +N TV +IGARRL TV+ER++ED+SF A + K V Sbjct: 459 NEAIEHIASIAAKVNKTVDNIGARRLHTVLERIVEDLSFDAPERYAKFVAAGGKGELQVK 518 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I + + IG+ + D+ F+L Sbjct: 519 IGVKDIDDAIGNMLKQEDLSRFVL 542 >gi|261407988|ref|YP_003244229.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp. Y412MC10] gi|261284451|gb|ACX66422.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp. Y412MC10] Length = 468 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/466 (43%), Positives = 316/466 (67%), Gaps = 36/466 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IVSELD+YI+GQ+DAK++VA+ALRNR+RR L D RDE++PKNIL++GPTGVG Sbjct: 5 SMTPRQIVSELDKYIVGQKDAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ R ++V+++ Sbjct: 65 KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEKVKDK 124 Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156 A A ERI+ L G+ + N E+ R+++R Sbjct: 125 AEEMANERIVQLLAPSTKGQKSQRNPFEMLFGGGNNETQADEEDADDKDVSLKEKRRQVR 184 Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 G++ D+ I+I+V D + ++ + F G +G +N+ E+F +M R K+ ++S Sbjct: 185 FNLLSGKLEDETIEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L ++E+ +LIDMD V ++SI+ E GI+F+DE DK+ ++ +G VSREGV Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL+ Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELNSLSL 362 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ L QY L++TE + ++F+ ++I +A +A ++N +IGARRL T Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEIEFSPEAIREIAQIAASVNQNTENIGARRLHT 422 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+SF A +L +VI +YVR + + D+ +IL Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPQYVREKLAGIAQDRDLSQYIL 468 >gi|228966774|ref|ZP_04127818.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar sotto str. T04001] gi|228792873|gb|EEM40431.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis serovar sotto str. T04001] Length = 453 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/458 (44%), Positives = 307/458 (67%), Gaps = 38/458 (8%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPTGVGKT ++RR Sbjct: 1 MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V+++A A + Sbjct: 61 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120 Query: 133 RILDALV---------------------GKTATSNT---------REVFRKKLRDGEISD 162 R+++ LV + TS+T R+ +KL G + D Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVERKLAAGLLED 180 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219 + + IEV + S S FD+ G + + ++ F +GS + KK ++SV++ L Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKLL 236 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+V Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LED Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS++ + + I +YV + D+ FIL Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453 >gi|332981426|ref|YP_004462867.1| heat shock protein HslVU, ATPase subunit HslU [Mahella australiensis 50-1 BON] gi|332699104|gb|AEE96045.1| heat shock protein HslVU, ATPase subunit HslU [Mahella australiensis 50-1 BON] Length = 464 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/466 (44%), Positives = 306/466 (65%), Gaps = 35/466 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 ++P+EIV ELD+YIIGQ AK+AVA+ALRNR+RR LP ++R+E+MPKNI+++GPTGV Sbjct: 1 MEYTPKEIVKELDKYIIGQHKAKKAVAVALRNRYRRNLLPQEMREEIMPKNIIMMGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APFIKVE TK+TE+GYVGR+VE ++RDLV+VAI +V+ + EV + Sbjct: 61 GKTEIARRLAKLVNAPFIKVEATKYTEVGYVGRDVESMVRDLVEVAIRMVKNQKMSEVAD 120 Query: 125 QASINAEERILDALV----GKTATSNTREVF----------------------------R 152 +A AEER+LD L+ + + N E F + Sbjct: 121 RAKQLAEERLLDVLLPPRRKRNSGKNPLEAFFGGQGAEDKEDEESETLIDNSADGRLRMK 180 Query: 153 KKLRDGEISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 + L GE+ + I+IEV D + S + F G + I N+ ++F + KK+ R++ Sbjct: 181 EMLDAGELDGRYIEIEVQDNAVSGMGIFSAIGMDDLAI-NMQDMFGNLFPKKTKKR-RVT 238 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ ++E+ +LIDMD V +++ E GI+F+DE DK+ R+ G G VSREGV Sbjct: 239 VKEARRIFEQEEAQKLIDMDEVTEEALNKAEQEGIIFIDELDKVAGREGGAGPDVSREGV 298 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEG++V TKYG + TD++LFIA+GAFHV++ +DL+PE+QGRFPV V L SL++ Sbjct: 299 QRDILPIVEGTTVMTKYGPVKTDYMLFIAAGAFHVAKVSDLIPELQGRFPVLVQLDSLSQ 358 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF+ ILT ++ LI QYK LM + + L+FT+D+ID +A +A +N +IGARRL T Sbjct: 359 QDFKQILTQPQNALIKQYKALMSADNLELEFTDDAIDEIARMAYVINENNENIGARRLHT 418 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 VMER+LEDIS+ +++D YV+ + + + D+ +IL Sbjct: 419 VMERLLEDISYEMPVSGGNEIIVDKAYVQGVLKETVQDKDISKYIL 464 >gi|251797450|ref|YP_003012181.1| heat shock protein HslVU, ATPase HslU [Paenibacillus sp. JDR-2] gi|247545076|gb|ACT02095.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus sp. JDR-2] Length = 467 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/463 (44%), Positives = 312/463 (67%), Gaps = 33/463 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PR+IV+ELD+YI+GQ+ AKR+VAIALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 6 FTPRQIVAELDKYIVGQKPAKRSVAIALRNRYRRSMLDETLRDEIVPKNILMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ + + V+++A Sbjct: 66 TEIARRLAKLVKAPFIKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKAEKTEAVQDKA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 A ER++ LV K ++ F R + RD Sbjct: 126 EKLANERLVSLLVPSKVKEKQSKNPFEMLFGNQQNNKETVEEPEQDNVVISKRSQARDDL 185 Query: 158 --GEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 G++ ++ +++E+ D S + + G +G +N+ ++ + M K++ +++V++ Sbjct: 186 AAGKLENEIVEVEIEDNSPTMLDMLGGQGPDGLGGMNMQDMLGQFMPKKTKQR-KLAVKE 244 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L+++E+++LI+MD V +S+ E GI+F+DE DKI + GNG VSREGVQRD Sbjct: 245 ARKVLIQEEANKLINMDDVIAESVSRAEQTGIIFIDEIDKIASPSRGNGPDVSREGVQRD 304 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TD++LFIA+GAFHV++P+DL+PE+QGRFP+RV L SL+ DF Sbjct: 305 ILPIVEGSTVVTKYGPVKTDYVLFIAAGAFHVAKPSDLIPELQGRFPIRVELTSLSLEDF 364 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 ILT+ ++ L QY L++TEGI ++F++++I +A +A +LN +IGARRL T++E Sbjct: 365 VSILTEPKNALTKQYAALLQTEGIAIEFSDEAIKEIASIAADLNRNTENIGARRLHTILE 424 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+SF A D+ +VI EYVR +G D+ +IL Sbjct: 425 KLLEDLSFEAPDITLDHMVITPEYVREKVGGIAKNRDLSQYIL 467 >gi|168067862|ref|XP_001785823.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662525|gb|EDQ49367.1| predicted protein [Physcomitrella patens subsp. patens] Length = 593 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/469 (44%), Positives = 302/469 (64%), Gaps = 39/469 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P ++V LDRYI+GQQ+AKRAVA+ALRNRWRR ++P R+E++PKNIL++GPTG GK Sbjct: 126 LTPVKVVEMLDRYIVGQQEAKRAVAVALRNRWRRHRIPEAFREEIVPKNILMIGPTGCGK 185 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+ R ++ ++ Sbjct: 186 TEIARRLAKIAYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIALQRQKMRAKLVKEV 245 Query: 127 SINAEERILDALV-------------------------------GKTATSNTR---EVFR 152 E R+LD + G++ R E FR Sbjct: 246 ENVVEARLLDIFISRQLPPVEVSPIETWPPALNIGQVGSASRVEGESPVPEARVDYEAFR 305 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRKKKIR 209 + RDG + +++I +++ D S + +I G + G+ L K + S R +++ Sbjct: 306 QLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVFRLPQMEKFLKSQRMERME 364 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGIGVSR 268 +++ P L E ++ +++D + +D+I + E+ GIVF+DE DKIV ++ G S Sbjct: 365 ITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDEIDKIVTNHETRYGADASS 424 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRDLLP++EGS VSTKYG++NTDHILFI SGAFH +P+D+L E+QGR P+RV LK Sbjct: 425 EGVQRDLLPIIEGSVVSTKYGNVNTDHILFICSGAFHSCKPSDMLAELQGRLPIRVELKG 484 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L + D ILT+ E+N+I Q + LMKTE I L FT+D+I+ LA VA +N +V +IGARR Sbjct: 485 LGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEELAKVAAEVNRSVDNIGARR 544 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L TV+ERV+EDISF A + +T ID E V+ +GDF + D+ F+L Sbjct: 545 LHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKADLSRFVL 593 >gi|317129214|ref|YP_004095496.1| heat shock protein HslVU, ATPase HslU [Bacillus cellulosilyticus DSM 2522] gi|315474162|gb|ADU30765.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus cellulosilyticus DSM 2522] Length = 465 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 306/467 (65%), Gaps = 34/467 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 ++ +PR+IV +L+++I+GQ AK++VA+ALRNR+RR QL LR+E+ PKNIL++GPT Sbjct: 1 MSETLTPRQIVEKLNQFIVGQDKAKKSVAVALRNRYRRSQLDEGLREEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ +I IV+E + V Sbjct: 61 GVGKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSIRIVKEEKMARV 120 Query: 123 REQASINAEERILDALV-GKTATSNTREVFR----------------------------- 152 + QA NA R++ LV + SN R Sbjct: 121 KVQAERNANHRLVALLVPTQKKESNYRNPLEMLFQGNQTEDQDTEDEREEESVKDRRRRV 180 Query: 153 -KKLRDGEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 ++L +GE+ ++ + +EV + S+ + F G +G +N+ E+ +M +KKK ++ Sbjct: 181 TQQLANGELEEEYVTVEVDEQQSNFLDMFSGSGMEQMG-MNMQEMLGGMM-PKKKKKRKL 238 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +V++ L DE+ +LIDM+ V +D++ E GI+F+DE DK+ + + VSREG Sbjct: 239 TVKEARKVLTVDEAQKLIDMEEVTQDAVSKAEQLGIIFIDEIDKVAGKSQQQSVDVSREG 298 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILF+A+GAFH S+P+DL+PE+QGRFP+RV L SL Sbjct: 299 VQRDILPIVEGSTVVTKYGPVKTDHILFVAAGAFHFSKPSDLIPELQGRFPIRVELSSLT 358 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DF IL D ++ LI QY+ L++TEGI L F++D+I +A +A +N +IGARRL Sbjct: 359 VEDFVRILVDPDNALIKQYQALLETEGIKLKFSDDAIYKIALIATEVNEETENIGARRLH 418 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+SF AS++ VVI +EYV + D D+ +IL Sbjct: 419 TILEKLLEDLSFEASEVTLDEVVITSEYVEEKLQDVAKNRDLSQYIL 465 >gi|229117315|ref|ZP_04246693.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock1-3] gi|228666215|gb|EEL21679.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus Rock1-3] Length = 453 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/458 (44%), Positives = 305/458 (66%), Gaps = 38/458 (8%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 + +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPTGVGKT ++RR Sbjct: 1 MEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGKTEVARR 60 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V+++A A + Sbjct: 61 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 120 Query: 133 RILDALV-----------------GKTATSNT-------------REVFRKKLRDGEISD 162 R+++ LV G SN R+ +KL G + D Sbjct: 121 RLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDEQEDVEIEKKRQDVERKLAAGLLED 180 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219 + + IEV + S S FD+ G + + ++ F +GS + KK ++SV++ L Sbjct: 181 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKLL 236 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+V Sbjct: 237 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 295 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 296 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 355 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LED Sbjct: 356 EPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 415 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS++ + + I +YV + D+ FIL Sbjct: 416 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 453 >gi|315648141|ref|ZP_07901242.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex V453] gi|315276787|gb|EFU40130.1| heat shock protein HslVU, ATPase subunit HslU [Paenibacillus vortex V453] Length = 468 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 315/466 (67%), Gaps = 36/466 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR+IVSELD+YI+GQ++AK++VA+ALRNR+RR L D RDE++PKNIL++GPTGVG Sbjct: 5 SMTPRQIVSELDKYIVGQKEAKKSVAVALRNRYRRSLLTDDERDEIVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V+ R ++V+++ Sbjct: 65 KTEIARRLAKLVHAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIRMVKLERTEQVKDK 124 Query: 126 ASINAEERILDALV----GKTATSNTREVF-------------------------RKKLR 156 A A ERI++ L G+ + N E+ R+++R Sbjct: 125 AEELANERIVELLAPSTKGQKSQRNPFEMLFGGNNNDTQAEEEDSADKDVSLKEKRRQVR 184 Query: 157 ----DGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 G++ D ++I+V D + ++ + F G +G +N+ E+F +M R K+ ++S Sbjct: 185 FNLLSGKLEDDTVEIDVEDAAPNMFDMFAGQGNDQMG-MNMQEMFGNLM-PKRTKRRKLS 242 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L ++E+ +LIDMD V ++SI+ E GI+F+DE DK+ ++ +G VSREGV Sbjct: 243 VKEARKVLTQEEAGKLIDMDDVIQESIRRAEQSGIIFIDEIDKVASQGRQSGPDVSREGV 302 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS++ TKYG + TD +LFIA+GAFH+++P+DL+PE+QGRFP+RV L SL Sbjct: 303 QRDILPIVEGSTIMTKYGPVKTDFVLFIAAGAFHIAKPSDLIPELQGRFPIRVELSSLTL 362 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ L QY L++TE + ++F+ ++I +A +A ++N +IGARRL T Sbjct: 363 DDFVSILTEPKNALTKQYVNLLRTEDLEVEFSPEAIREIAQIAASVNQNTENIGARRLHT 422 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+SF A +L +VI EYVR + + D+ +IL Sbjct: 423 ILEKLLEDLSFEAPELTLDRMVITPEYVREKLAGIAQDRDLSQYIL 468 >gi|303253151|ref|ZP_07339300.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302647833|gb|EFL78040.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 395 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/384 (53%), Positives = 275/384 (71%), Gaps = 13/384 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PREIVSELD +IIGQ +AKRAVAIALRNRWRR QLP DLR E+ PKNIL++GPTGV Sbjct: 1 MSMTPREIVSELDAHIIGQNEAKRAVAIALRNRWRRMQLPEDLRQEVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ II+DL DVA+ +V+ ++ R Sbjct: 61 GKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIKDLTDVAVKLVKSQAVEKNRM 120 Query: 125 QASINAEERILDAL----------VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +A AE+RILD L V ++ S+TR+VFRKKLR+G++ DKEI+I+VA S Sbjct: 121 RAQDAAEDRILDVLLPPAKDQWGNVQESDNSSTRQVFRKKLREGQLDDKEIEIDVAAQVS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 P G L LF M + KK +M ++ ++ +E+ +L++ + + Sbjct: 181 --VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDALKVMVDEEAAKLVNPEELK 237 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + +I+ VE +GIVF+DE DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TD Sbjct: 238 QQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTD 297 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMK Sbjct: 298 HILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMK 357 Query: 355 TEGIILDFTEDSIDALADVAVNLN 378 TEG+ ++FT+D I +A+ A +N Sbjct: 358 TEGVEIEFTKDGISKIAESAFRVN 381 >gi|312135859|ref|YP_004003197.1| heat shock protein hslvu, atpase subunit hslu [Caldicellulosiruptor owensensis OL] gi|311775910|gb|ADQ05397.1| heat shock protein HslVU, ATPase subunit HslU [Caldicellulosiruptor owensensis OL] Length = 464 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/468 (47%), Positives = 318/468 (67%), Gaps = 39/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P+EIV ELD+YI+GQ+ AK+ VAIALRNR+RR +LP +L+DE+ PKNIL+VGPTGV Sbjct: 1 MELTPQEIVRELDKYIVGQERAKKCVAIALRNRYRRAKLPKELQDEITPKNILMVGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI++V+ + ++E Sbjct: 61 GKTEIARRLAKLVNAPFVKVEATKFTEVGYVGRDVDSMVRDLVENAISLVKSEYMERMKE 120 Query: 125 QASINAEERILD------------------ALVGKTATS-------------NTREVFRK 153 +A E+RIL+ AL G T+ RE+ R+ Sbjct: 121 RAKALVEDRILEILIPEPQSRKAGFKNPFEALFGATSQEMEQNYQTTDDYIRTQREILRE 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRM 210 KLR GE+ DK +++EV DT F++ G + +S F + GS +KKK +M Sbjct: 181 KLRSGELEDKVVEVEVEDTVK--PPFEMIMGTISDEMGIS--FQDIFGSLFPKKKKKKKM 236 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++++ L ++E ++LIDMD V R++IQ E +GI+F+DE DKI + S G VSREG Sbjct: 237 TIREAREVLEQEEYNKLIDMDEVIREAIQRAEQHGIIFIDEIDKIAGKGSSVGPDVSREG 296 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V TKYG + TDHILFIA+GAFHV++ +DL+PE+QGRFPV V L L Sbjct: 297 VQRDILPIVEGSTVMTKYGPVKTDHILFIAAGAFHVAKVSDLIPELQGRFPVVVELSPLT 356 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + DF+ ILT ++ +I QY ELMKTEG+ + FT+D+I+A+A VAV +N +IGARRL Sbjct: 357 EEDFKKILTQPKNAIIKQYVELMKTEGVNITFTDDAIEAIAKVAVKINEQSENIGARRLH 416 Query: 391 TVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+E+++EDISF +++++ +VID +YV + D + D+ FI+ Sbjct: 417 TVVEKIMEDISFEYANVEKPIDLVIDKDYVYSKVSDIIKDKDLSRFII 464 >gi|323705451|ref|ZP_08117026.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacterium xylanolyticum LX-11] gi|323535353|gb|EGB25129.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacterium xylanolyticum LX-11] Length = 460 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 213/468 (45%), Positives = 299/468 (63%), Gaps = 46/468 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV LD+YI+GQ AKR+VA+ALRNR+RR LP +++DE+ PKNIL++GPTGVG Sbjct: 3 NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRYRRNLLPDEIKDEITPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ + V + Sbjct: 63 KTEIARRIAKLIEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122 Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158 A AEERILD L+ + + F R+K+R G Sbjct: 123 AKELAEERILDYLINGRKSKRQKNPFEFLFNAQGDEDTHDDDGQEIKMQKEQLREKIRSG 182 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---------GRKKKIR 209 E++D+ I+IE+ D+SS I GA +NL ++F+ ++ G KKI Sbjct: 183 ELNDRIIEIEITDSSSPILEMYSNLGAEEMNINLQDMFADILPKKKKYKKVPIGEAKKI- 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 L +E+ LIDMD V ++I+ E GI+F+DE DKI NG VSRE Sbjct: 242 ---------LESEEAQNLIDMDEVIDEAIRRTEQDGIIFIDEIDKIAGSGYTNGPDVSRE 292 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L Sbjct: 293 GVQRDILPIVEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPL 352 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 K DF IL + ++ L QY L+ TEG+ +++T+D ID +A++A +N DIGARRL Sbjct: 353 TKEDFIRILKEPKNALTKQYAALLSTEGVEIEYTDDGIDRIAEIAYIINQQSEDIGARRL 412 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TVME++ E +SF A D+ V+ID Y+ + D + D+ +IL Sbjct: 413 HTVMEKLFEKLSFEAPDITGSKVIIDKNYIDEQLKDNLNRFDVNKYIL 460 >gi|56964039|ref|YP_175770.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus clausii KSM-K16] gi|62286750|sp|Q5WFQ1|HSLU_BACSK RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56910282|dbj|BAD64809.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit [Bacillus clausii KSM-K16] Length = 463 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 310/466 (66%), Gaps = 34/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +PREIV L++YI+GQ AKR+VA+ALRNR+RR +L +R+E+ PKNIL++GPT Sbjct: 1 MTSTLTPREIVERLNQYIVGQDGAKRSVAVALRNRYRRTKLDPSMREEITPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E R V Sbjct: 61 GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRLVKEERVALV 120 Query: 123 REQASINAEERILDALVGKTAT-----------------------------SNTREVFRK 153 +++A A++R+++ LV +N + + Sbjct: 121 KDEAKQLADKRLIELLVPSMKKETNYKNPFEMLFSQPDKEEEEDGEEELTRANLKRKMAE 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMS 211 KL+ GE+ ++ + +EV + + + GGA + + N+ E+ S +M +KKK RM+ Sbjct: 181 KLKQGELEERTVTVEVTEQNHGFMDL-FQGGAGMEQMGMNMQEMLSNMM-PKKKKKRRMT 238 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V + L +E+ +LIDMD V +++I E GI+F+DE DK+ ++ G VSREGV Sbjct: 239 VAEARGVLAEEEAQKLIDMDDVTQEAITRAEQLGIIFIDEIDKVAGKND-QGANVSREGV 297 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYG++ TDHILFIA+GAFH+++PADL+PE+QGRFP+RV L+SL+ Sbjct: 298 QRDILPIVEGSTVVTKYGAVKTDHILFIAAGAFHMAKPADLIPELQGRFPIRVELQSLSV 357 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L QY+ L++TEGI + F+++++ +A +A +N +IGARRL T Sbjct: 358 DDFVRILVEPDNALTKQYEALLQTEGIEMKFSDEAVRKIATIASEVNQETENIGARRLHT 417 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+SF A+D+ +T+ I +YV +G D+ FIL Sbjct: 418 LLEKLLEDLSFEAADIHLETLEITEQYVEEKLGSIAKNRDLSQFIL 463 >gi|297520348|ref|ZP_06938734.1| ATP-dependent protease ATP-binding subunit HslU [Escherichia coli OP50] Length = 392 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/394 (50%), Positives = 277/394 (70%), Gaps = 13/394 (3%) Query: 22 GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 GQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGKT I+RRLA+LA APF Sbjct: 1 GQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 60 Query: 82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV-- 139 IKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A AEERILD L+ Sbjct: 61 IKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPP 120 Query: 140 -----GKTA----TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190 G+T S R+ FRKKLR+G++ DKEI+I++A + PG + Sbjct: 121 AKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEM-TS 179 Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250 L +F +G ++K ++ ++ L+ +E+ +L++ + + +D+I VE +GIVF+D Sbjct: 180 QLQSMFQN-LGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFID 238 Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310 E DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDHILFIASGAF +++P+ Sbjct: 239 EIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPS 298 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM TEG+ ++FT+ I + Sbjct: 299 DLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 A+ A +N + +IGARRL TV+ER++E+IS+ A Sbjct: 359 AEAAWQVNESTENIGARRLHTVLERLMEEISYDA 392 >gi|239826608|ref|YP_002949232.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp. WCH70] gi|259491373|sp|C5D8V9|HSLU_GEOSW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|239806901|gb|ACS23966.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. WCH70] Length = 465 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/462 (44%), Positives = 307/462 (66%), Gaps = 32/462 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 5 LTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++A Sbjct: 65 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDRA 124 Query: 127 SINAEERILDALV------------------GKTATSNTREVFRK------------KLR 156 A +R+++ LV +T+ +T + + +L Sbjct: 125 EQQANKRLVELLVPGKQKQTMKNPLELLFGGAQTSQQDTYQTYEDDHIEQKRRQVAWQLA 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ D+ + IEV + +F G +N+ + S ++ RKK+ + Sbjct: 185 NGQLEDEMVTIEVEEQQPMFFDFLQGAGIEQMGMNMQDALSSLIPKRRKKRKLKVRE-AR 243 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275 L +E+ +LIDMD V +++I++ E GI+F+DE DKI + + + VSREGVQRD+ Sbjct: 244 KVLTNEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGQAASSADVSREGVQRDI 303 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 304 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDFV 363 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + ++ LI QYK L+ TEGI L+F++D+I +A+VA +N T +IGARRL T+ME+ Sbjct: 364 KILVEPDNALIKQYKALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTIMEK 423 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G+ D+ FIL Sbjct: 424 LLEDLLFEAPDITLDEVVITPQYVEQKLGNIVKNKDLSEFIL 465 >gi|311068137|ref|YP_003973060.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus atrophaeus 1942] gi|310868654|gb|ADP32129.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus atrophaeus 1942] Length = 467 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/466 (44%), Positives = 314/466 (67%), Gaps = 39/466 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQ DAK+AVA+ALRNR+RR L L+DE++PKNIL++GPTGVGK Sbjct: 6 LTPRQIVDRLDQYIVGQHDAKKAVAVALRNRYRRSLLDEKLKDEIVPKNILMMGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L GAPFIK+E TKFTE+GYVGR+VE ++RDLV+ ++ +++E + ++V++QA Sbjct: 66 TEIARRIAKLVGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKINDVKDQA 125 Query: 127 SINAEERILDALV-GKTATSNTREVF--------------------------RKKLRD-- 157 NA +RI+ LV GK S + F RK++ Sbjct: 126 EENANKRIVSLLVPGKKKQSGVKNPFEMLFGGNQPNGDEENDSQEEASIEEKRKRMAHQL 185 Query: 158 --GEISDKEIDIEVADTSSDISNFDIPGGASVGI--LNLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D I +EV + S FD+ G+ + +N+ + S +M +KK+ +M+V+ Sbjct: 186 AMGELEDHYITVEVEEQQP--SMFDMLQGSGMEQMGMNMQDALSSMM-PKKKKRRKMTVR 242 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG--NGIGVSREGV 271 + L +E+ +LIDMD V ++++ E GI+F+DE DKI A++ G + VSREGV Sbjct: 243 EARKVLTNEEASKLIDMDEVGQEAVLRAEQGGIIFIDEIDKI-AKNGGASSSADVSREGV 301 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V TKYGS+ TDH+LFIA+GAFH+++P+DL+PE+QGRFP+RV L L Sbjct: 302 QRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELSKLTV 361 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL + ++ L+ QY+ L++TEGI L+F++++I +A+VA ++N +IGARRL T Sbjct: 362 DDFVKILVEPDNALLKQYQALLQTEGISLEFSDEAIRKIAEVAYHVNQDTDNIGARRLHT 421 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LE++SF A D+ + + I +YV +G + D+ FIL Sbjct: 422 ILERLLEELSFEAPDVTMEKITITPQYVEDKLGTIANNKDLSQFIL 467 >gi|78043832|ref|YP_360610.1| ATP-dependent protease ATP-binding subunit HslU [Carboxydothermus hydrogenoformans Z-2901] gi|123729577|sp|Q3AB74|HSLU_CARHZ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|77995947|gb|ABB14846.1| heat shock protein HslVU, ATPase subunit HslU [Carboxydothermus hydrogenoformans Z-2901] Length = 461 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 215/461 (46%), Positives = 315/461 (68%), Gaps = 31/461 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+IV LD+YIIGQ+ AK+AVA+ALRNR+RR+ LP L+DE++PKNIL++GPTGVG Sbjct: 3 NLTPRQIVEYLDKYIIGQEAAKKAVAVALRNRYRRKLLPPHLKDEIIPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VRE + V ++ Sbjct: 63 KTEIARRLAKLIKAPFVKVEATKFTEVGYVGRDVEGMIRDLVETSLRMVREEKIKMVEDK 122 Query: 126 ASINAEERILDALVGKTATSNTREVF------------------------RKKLRD---- 157 A A ER+ + ++ N + F R++L+D Sbjct: 123 AYNLAVERLSEIMIPNPKKENIKNPFEMFFGGIREDAAKTDPAYDELNYRRRELQDKIKK 182 Query: 158 GEISDKEIDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 G + ++ ++IEV + + + F + G +G LN ++ ++ RKK+ R++V++ Sbjct: 183 GFLDNEMVEIEVEEQKTPMVEVFGVGGIEEMG-LNFQDILGGLIPPRRKKR-RVTVKEAL 240 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 L + E+ +LIDMD V R++I+ E GIVFLDE DKI + + +G VSR GVQRD+L Sbjct: 241 KILTQQEAQKLIDMDEVQREAIKRAEEDGIVFLDEIDKIASTGNTHGPDVSRGGVQRDIL 300 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV LKSL DF+ Sbjct: 301 PIVEGSTVLTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKSLTVEDFKK 360 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT E+ L QY EL+ TEG+ L FTEDS++ +A +A +N +IGARRL T++E+V Sbjct: 361 ILTVPENALTKQYVELLATEGVNLKFTEDSLEEIAKMAYTVNERNENIGARRLITILEKV 420 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+SF+A ++ +TVVID ++V+ + + ++D+ +IL Sbjct: 421 LEDLSFNAPEMWGQTVVIDRKFVQDKLSEIVHDSDLSRYIL 461 >gi|258645671|ref|ZP_05733140.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM 15470] gi|260403038|gb|EEW96585.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM 15470] Length = 453 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 213/457 (46%), Positives = 304/457 (66%), Gaps = 31/457 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR IV LD YI+GQQ+AKR+VA+ALRNRWR +LP ++ E+ PKNILL+GPTGVG Sbjct: 3 DLTPRRIVEYLDEYIVGQQNAKRSVAVALRNRWRSSRLPKEIAREVSPKNILLIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES---RRDEV 122 KT I+RR+A L GAPF+KVE TK+TE+GYVGR+VE ++RDL + A+ +V++ R + Sbjct: 63 KTEIARRIAALTGAPFVKVEATKYTEVGYVGRDVESMVRDLAEEAVRLVKKQESGRYGKD 122 Query: 123 REQASIN--AE--------------ERILDALVGKTATSNTREVFRKK-----LRDGEIS 161 E+A++ AE E IL KT S+ E R+K +R GE+ Sbjct: 123 AEEAAVQKIAEIMWPAKKKETRSPMEIILGEKAEKTGVSDEGERERRKNLLARIRSGELD 182 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 D++I++E+ + + D +S++F+ +M + KK +M+V+ L Sbjct: 183 DRQIEVELEEKGNIEDTADNEQAN-----RISQIFASMMPK-KMKKRKMTVRMAKTVLAE 236 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVE 280 ++ ++DMD V ++ + E GI+F+DE DKI R +G VSREGVQRD+LP+VE Sbjct: 237 VSAEEMVDMDVVRDRAVALAEERGIIFIDEIDKIAGRHGASGGPDVSREGVQRDILPIVE 296 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++V TKYG I TDHILF+A+GAFHVS+P+DL+PE+QGRFP+RV LKSL + D R ILT+ Sbjct: 297 GATVKTKYGRIKTDHILFMAAGAFHVSKPSDLIPELQGRFPIRVELKSLTEEDLRKILTE 356 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 LI QY L++TEG+ + FTEDS+ A+A++A +NS DIGARRL T++ERVLE++ Sbjct: 357 PRQALIRQYTALLETEGVTVTFTEDSVSAIAEIASVVNSETEDIGARRLYTILERVLEEL 416 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF AS+L+ K V ID YVR +G+ + D ++IL Sbjct: 417 SFEASELENKEVTIDGTYVRQKLGEITKDMDTSNYIL 453 >gi|327441060|dbj|BAK17425.1| ATP-dependent protease HslVU, ATPase subunit [Solibacillus silvestris StLB046] Length = 463 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/464 (42%), Positives = 311/464 (67%), Gaps = 35/464 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PR+I +L+R+I+GQ+ AKRAVA+ALRNR+RR L +L+ E++PKNIL++GPTGV Sbjct: 4 INLTPRQITEQLNRHIVGQETAKRAVAVALRNRYRRSLLSEELKTEVIPKNILMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A+L APFIKVE TKFTE+GYVGR+VE ++RDLV+ + +V++ + V++ Sbjct: 64 GKTEIARRIAKLTNAPFIKVEATKFTEVGYVGRDVESMVRDLVEASRRLVKDEMFERVKD 123 Query: 125 QASINAEERILDALVGK------------------------TATSNTREVFRKK------ 154 QA NA + ++ LV TA + E+ ++ Sbjct: 124 QAERNANDILVKLLVPSKVKEKLTQNPFEMLFGQKESSQEDTANQDEPEIRTRRAQITQD 183 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN-LSELFSKVMGSGRKKKIRMSVQ 213 L+DG++ ++ + IEV + + + FD G ++ N + ++ S +M KK+ ++ V+ Sbjct: 184 LKDGKLEEQWVTIEVTENAPSL--FDAMPGMNMDNANGMQDMLSNLMPKKTKKR-KVQVK 240 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 L ++E+++LID D + ++IQ E GI+F+DE DKI ++ S + VSREGVQR Sbjct: 241 DARRLLTQEEANKLIDTDALSSEAIQRAEQAGIIFIDEIDKIASKGSSSA-EVSREGVQR 299 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V+TKYG++ TD++LFIA+GAFH+S+P+DL+PE+QGRFP+RV L+ L K D Sbjct: 300 DILPIVEGSTVTTKYGTVKTDYMLFIAAGAFHISKPSDLIPELQGRFPIRVELEKLTKDD 359 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL + + +LILQYK L++TEG+ L+FT+++I+ +A++A +N +IGARRL T++ Sbjct: 360 FVRILKEPDQSLILQYKALLETEGVTLNFTDEAIERIAEIATEVNQETDNIGARRLHTIL 419 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ER+LE++SF AS++ + I YV + + D+ FIL Sbjct: 420 ERLLEELSFEASEIAPAHIDITPNYVDQKLANIVKNKDLSQFIL 463 >gi|304316913|ref|YP_003852058.1| heat shock protein HslVU, ATPase HslU [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778415|gb|ADL68974.1| heat shock protein HslVU, ATPase subunit HslU [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 460 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/468 (44%), Positives = 302/468 (64%), Gaps = 46/468 (9%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV LD+YI+GQ AKR+VA+ALRNR+RR LP +++DE+ PKNIL++GPTGVG Sbjct: 3 NYTPKEIVDALDKYIVGQDLAKRSVAVALRNRFRRNLLPDEIKDEVTPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+VE +IRDL++ AI +V++ + V + Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVESMIRDLLESAIRMVKQEKMQNVMLR 122 Query: 126 ASINAEERILDALVGKTATSNTREVF---------------------------RKKLRDG 158 A AEERI+D L+ + F ++K+R+G Sbjct: 123 AKELAEERIVDYLLNGRKNKRQKNPFEFLFNAPSNDEVQDDEQQEIKLKKAQLKEKIRNG 182 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---------GRKKKIR 209 E++D I+IE+ D+++ I G+ +NL ++FS ++ G KKI Sbjct: 183 ELNDTVIEIEITDSAAPILEMYSNIGSEEMNINLQDMFSDILPKKKKYKKVPIGEAKKI- 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 L +E+ LIDMD V ++I+ E GI+F+DE DKI NG VSRE Sbjct: 242 ---------LESEEAQNLIDMDEVIDEAIKRTEQDGIIFIDEIDKIAGSGYTNGPDVSRE 292 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V TKYG + TD+ILFIA+GAF+VS+ +DL+PE+QGRFPVRV LK L Sbjct: 293 GVQRDILPIVEGSTVMTKYGPVKTDYILFIAAGAFNVSKVSDLIPELQGRFPVRVELKPL 352 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 K DF IL + ++ L QY L+KTEG+ +++++D+ID +A++A +N DIGARRL Sbjct: 353 TKEDFIRILKEPKNALTKQYAALLKTEGVDVEYSDDAIDRIAEIAYLINQQSEDIGARRL 412 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TVME++ E +SF A ++ K V+ID Y+ + D S+ D+ +IL Sbjct: 413 HTVMEKLFEKLSFEAPEITGKKVIIDRNYIDEQLKDNLSKFDVNKYIL 460 >gi|307109108|gb|EFN57346.1| hypothetical protein CHLNCDRAFT_56057 [Chlorella variabilis] Length = 441 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/443 (47%), Positives = 302/443 (68%), Gaps = 17/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR++V LDRYI+GQ AK+AVA ALRNRWRR ++P+ LR+E+ PKN+L++GPTG GK Sbjct: 4 LTPRQVVELLDRYIVGQGAAKKAVANALRNRWRRHKVPSPLREEIHPKNLLMIGPTGCGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI ++R+ R E++ + Sbjct: 64 TEIARRLAKMANAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIIMMRQRLRREMKAKI 123 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186 EERIL AL+G A ++TR FR R+GE+ ++ + + + + G + Sbjct: 124 DEAVEERILTALLGDVA-ADTRNSFRALYREGELDER----MWSWSWPSPPSHGMLGPWA 178 Query: 187 VGILNLSEL---FSKVMGS---GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G ++ E+ K+ G GR +K +M V + P + E++R I+ ++V R++IQ Sbjct: 179 SGDGSMQEMVVRVDKIWGGGPLGRGEKRKMKVSEARPLIEEQEAERYINAESVTREAIQA 238 Query: 241 VENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 VE GIVF+DE DKIV + + G S EGVQRDLLP++EGS+VSTK+G++NTD+ILFI Sbjct: 239 VEQDGIVFIDEIDKIVTSSEHRYGGDASAEGVQRDLLPIIEGSTVSTKHGNVNTDYILFI 298 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 SGAFH +P+D+L E+QGR P+RV LK L DF ILT+ ESN+I Q + L+ TE + Sbjct: 299 CSGAFHSCKPSDMLAELQGRLPIRVELKGLTAEDFYKILTEPESNMIKQQQALLTTENVE 358 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVI 414 L FT+ SI +A VA +N+ V +IGARRL T++ER+LED+SF A + +++ VVI Sbjct: 359 LIFTDASIREIARVAEEVNTNVDNIGARRLHTILERILEDVSFDAPEKAKESGSQVNVVI 418 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 D E V IGD + D+ ++L Sbjct: 419 DKEDVLTKIGDLLKKQDLSRYVL 441 >gi|303279102|ref|XP_003058844.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460004|gb|EEH57299.1| predicted protein [Micromonas pusilla CCMP1545] Length = 590 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/459 (44%), Positives = 298/459 (64%), Gaps = 25/459 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +P + V LD++I+GQ DAKRA A+ALRNRWRR ++ LRDE++PKNIL++GPTG Sbjct: 132 TDGLTPAKTVELLDKFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIGPTG 191 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT I+RRLA++ APF+KVE TKFTE+G+ GR+V+QII+DLVD A++I R R + + Sbjct: 192 CGKTEIARRLAKITDAPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAVHITRAKLRTKFQ 251 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS----DISNF 179 + E ++++ + G+T+ TRE F R+G + + I++E+ D + D+ + Sbjct: 252 SEVDAIVENKVVEFMCGETSGDATREAFLSMYREGRLDGRTIELELPDNAGGGPGDVLSG 311 Query: 180 DIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 +P V LN L+E G G K RM+V +C P + E +RLI+ DTV +++ Sbjct: 312 MVPPREVVISLNKFLNEGVRGKSGKGSTTKKRMTVAECRPVIEEMEYERLINSDTVVKEA 371 Query: 238 IQMVENYGIVFLDEFDK--------IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + EN GIVFLDE DK + + D +G S EGVQRDLLP++EGS V TK+G Sbjct: 372 LSATENDGIVFLDEIDKARSIPTPIVSSNDYRHGADASSEGVQRDLLPIIEGSVVQTKHG 431 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 ++NTD ILFIASGAFH +P+D+L E+QGR P++V LK L K D ILT+ E+N+I Q Sbjct: 432 NVNTDQILFIASGAFHQCKPSDMLAELQGRLPIKVELKGLTKEDLLRILTEPETNVIKQQ 491 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 K L++TEG+ L FT+ +I +AD++ +N TV +IGARRL TV+E+++ED+SF+A + Sbjct: 492 KALLETEGVDLSFTDAAIAHIADISAEVNRTVDNIGARRLHTVLEKIVEDVSFAAPERVR 551 Query: 410 KTVVIDAEYVRLH-----------IGDFPSETDMYHFIL 437 KT + E RL IG+ +TD+ F+L Sbjct: 552 KTREAEGEDARLKVVIDVKDVDDAIGELLKKTDLSRFVL 590 >gi|297530611|ref|YP_003671886.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. C56-T3] gi|297253863|gb|ADI27309.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. C56-T3] Length = 464 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/462 (45%), Positives = 309/462 (66%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR L LRDE+MPKNIL++GPTGVG Sbjct: 4 TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++ Sbjct: 64 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 123 Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156 A A +R+++ LV G+ A ++ R +L Sbjct: 124 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 183 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ ++ + IE+ + + +F G +N+ + S +M R+KK R+ V + Sbjct: 184 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 242 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275 L+ +E+ +LIDMD V +++I++ E GI+F+DE DKI + +G VSREGVQRD+ Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 302 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T++E+ Sbjct: 363 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G D+ FIL Sbjct: 423 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464 >gi|262195485|ref|YP_003266694.1| heat shock protein HslVU, ATPase HslU [Haliangium ochraceum DSM 14365] gi|262078832|gb|ACY14801.1| heat shock protein HslVU, ATPase subunit HslU [Haliangium ochraceum DSM 14365] Length = 456 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 223/458 (48%), Positives = 311/458 (67%), Gaps = 23/458 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +P IV+ELDRYI+GQ+ AKRAVA+ALRNRWRRQQ+ +L+DE+ PKNI+++G Sbjct: 1 MKTALELTPAAIVAELDRYIVGQKAAKRAVAVALRNRWRRQQVEGELKDEIAPKNIIMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RRLA+LA APF+KVE +KFTE+GYVGR+V+ I+RDL++V+I +VR+ Sbjct: 61 PTGVGKTEIARRLAKLARAPFVKVEASKFTEVGYVGRDVDSIVRDLMEVSIKLVRDEESV 120 Query: 121 EVREQASINAEERIL------------------DALVG-KTATSNTREVFRKKLRDGEIS 161 +VR +A AEER+L D G + A + TRE R LRDG++ Sbjct: 121 KVRPKAREAAEERLLDLLLPPRPRAFSDRPPGPDGQSGPQPADTATREKLRTLLRDGKLE 180 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELM 220 ++E+D+E+ + +S I GGA V + LS L + G+K K R M + + L Sbjct: 181 EREVDVEITEDNSPF--LQIFGGAGVEEMGLSGLRDMLGSIGKKTKSRKMKIPQALEALT 238 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLV 279 E D+LID +T+ R+++ EN GIVFLDE DKI V +D+ G VSREGVQRDLLP+V Sbjct: 239 DQEVDKLIDAETLTREAVTRAENAGIVFLDEVDKIAVGQDARQGPDVSREGVQRDLLPIV 298 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYG + TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L +DF ILT Sbjct: 299 EGSTVTTKYGVVRTDHVLFIAAGAFHTSKPSDLIPELQGRFPIRVELEPLTDADFVRILT 358 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + + L QY L+ TEGI + F ++++ LA +A +NS +IGARRL TV+ER+LE+ Sbjct: 359 EPRNALTKQYVALLSTEGIDIQFEDEAVRELAHIAAEVNSRTHNIGARRLHTVLERLLEE 418 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + FSA D+ +T+ I YV + + D+ ++IL Sbjct: 419 LLFSAPDIGPQTITITKPYVAERLDALVQDEDLANYIL 456 >gi|94496357|ref|ZP_01302934.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp. SKA58] gi|94424103|gb|EAT09127.1| heat shock protein HslVU, ATPase subunit HslU [Sphingomonas sp. SKA58] Length = 372 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/373 (52%), Positives = 273/373 (73%), Gaps = 4/373 (1%) Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 +T ISRRLA+LA APF+KVE TKFTE+GYVGR+VEQI+RDLV+ A+ + ++ RR+ VRE Sbjct: 3 QTEISRRLAKLADAPFVKVEATKFTEVGYVGRDVEQIVRDLVEEAVRLEKDRRREAVREA 62 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-G 184 AS A R+LDAL GK A+ TR FR+K+ + ++++ E++++VAD+ S +IPG G Sbjct: 63 ASEAAMARLLDALTGKEASEATRLSFRQKIENDQMNEVEVEVDVADSPS--MPMEIPGMG 120 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 VG++NLS++ SK G +KK+ +M V + +L+ +E D+ +D D V R +I E Sbjct: 121 GQVGMINLSDMMSKAFGQTQKKRRKMRVADAWDKLVEEEQDKRLDQDDVARVAISSAEQN 180 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVFLDE DKI D G VSREGVQRDLLPL+EG++V+TKYG + TDHILFIASGAF Sbjct: 181 GIVFLDEIDKIAVSDVRGG-SVSREGVQRDLLPLIEGTTVATKYGPLKTDHILFIASGAF 239 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DLLPE+QGR P+RV LK+L + DF IL+DT+++L+ QY+ L+ TE + +D T Sbjct: 240 HVAKPSDLLPELQGRLPIRVELKALTEEDFVAILSDTKASLVAQYRALLATEEVTIDLTP 299 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 + I A+A +A +NS V +IGARRLQTVME++LED+SF A D + +T+VIDA YV + Sbjct: 300 EGIRAVAKIAAEVNSEVENIGARRLQTVMEKLLEDVSFDAEDRRGETLVIDAAYVEKQLS 359 Query: 425 DFPSETDMYHFIL 437 +TD+ ++L Sbjct: 360 AVARDTDLSKYVL 372 >gi|45657473|ref|YP_001559.1| ATP-dependent protease ATP-binding subunit HslU [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797803|sp|Q72RY7|HSLU_LEPIC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|45600712|gb|AAS70196.1| ATP-dependent hsl protease [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 479 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/464 (44%), Positives = 308/464 (66%), Gaps = 35/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV++LD +II Q++AK+AVAIALRNR RR++L ++R+E+ PKNI+++GPTGVGK Sbjct: 18 LTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVGK 77 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL +++N+V++ R +V E A Sbjct: 78 TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137 Query: 127 SINAEERILDALVG---------------------------KTATSNTREVFRKKLRDGE 159 AEE +LD L+ KT TRE RKKL+ G+ Sbjct: 138 KQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTGK 197 Query: 160 ISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKC 215 + D+E+++++ + S S + + G ++ +L V+G + KK ++ + + Sbjct: 198 LDDQEVELDLPNPSVSQVPMLQVFGAGNLD--DLDNQLQNVLGDILPKKNKKRKLKIPEA 255 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L E+++L+D D V R++++ VE GI+FLDE DKI R+ +G VSREGVQRDL Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT S+L QY+ L+ T+GI L+F+ D I +A +A ++N +IGARRL T++ER Sbjct: 376 KILTAPRSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435 Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LE++SF DL E + V ID +YV + D+ +IL Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479 >gi|196247644|ref|ZP_03146346.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. G11MC16] gi|196212428|gb|EDY07185.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. G11MC16] Length = 464 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/462 (45%), Positives = 306/462 (66%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV LD++IIGQ++AK+AVAIALRNR+RR L LRDE+MPKNIL++GPTGVG Sbjct: 4 TLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + EV+++ Sbjct: 64 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEVKDR 123 Query: 126 ASINAEERILDALV-GK---------------------TATSNTREVFRKK-------LR 156 A A +R+++ LV GK S+ E KK L Sbjct: 124 AEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAWQLA 183 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ D+ + IE+ + + +F G +N+ + +M R+KK R+ V + Sbjct: 184 NGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLM-PKRRKKRRLKVSEAR 242 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275 L+ +E+ +LIDMD V +++I++ E GI+F+DE DKI ++ VSREGVQRD+ Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQRDI 302 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDFV 362 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T++E+ Sbjct: 363 SILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G+ D+ FIL Sbjct: 423 LLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464 >gi|138894735|ref|YP_001125188.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus thermodenitrificans NG80-2] gi|166221483|sp|A4IM89|HSLU_GEOTN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|134266248|gb|ABO66443.1| Two-component ATP-dependent protease (N-terminalserine protease) [Geobacillus thermodenitrificans NG80-2] Length = 464 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/462 (45%), Positives = 306/462 (66%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV LD++IIGQ++AK+AVAIALRNR+RR L LRDE+MPKNIL++GPTGVG Sbjct: 4 TLTPRQIVERLDQFIIGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + EV+++ Sbjct: 64 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMSEVKDR 123 Query: 126 ASINAEERILDALV-GK---------------------TATSNTREVFRKK-------LR 156 A A +R+++ LV GK S+ E KK L Sbjct: 124 AEQQANKRLVELLVPGKQKQTIKNPLELLFGGQASQPDNGHSHDDEQVEKKRRQVAWQLA 183 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ D+ + IE+ + + +F G +N+ + +M R+KK R+ V + Sbjct: 184 NGQLEDEMVTIEIEEQPPMLFDFLQGAGIEQMGVNMQDALGSLM-PKRRKKRRLKVSEAR 242 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDL 275 L+ +E+ +LIDMD V +++I++ E GI+F+DE DKI ++ VSREGVQRD+ Sbjct: 243 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARGKEVSGSADVSREGVQRDI 302 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T++E+ Sbjct: 363 SILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G+ D+ FIL Sbjct: 423 LLEDLLFEAPDIGLNRVVITPQYVEQKLGNIVKNKDLSEFIL 464 >gi|56419749|ref|YP_147067.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus kaustophilus HTA426] gi|261419414|ref|YP_003253096.1| ATP-dependent protease ATP-binding subunit HslU [Geobacillus sp. Y412MC61] gi|62286711|sp|Q5L0N1|HSLU_GEOKA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56379591|dbj|BAD75499.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus HTA426] gi|261375871|gb|ACX78614.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. Y412MC61] Length = 465 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/462 (44%), Positives = 309/462 (66%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR L LRDE+MPKNIL++GPTGVG Sbjct: 5 TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++ Sbjct: 65 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 124 Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156 A A +R+++ LV G+ A ++ R +L Sbjct: 125 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ ++ + IE+ + + +F G +N+ + S +M R+KK R+ V + Sbjct: 185 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 243 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275 L+ +E+ +LIDMD V ++++++ E GI+F+DE DKI + +G VSREGVQRD+ Sbjct: 244 KVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 303 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 304 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 363 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T++E+ Sbjct: 364 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 423 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G D+ FIL Sbjct: 424 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 465 >gi|327398617|ref|YP_004339486.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea maritima DSM 10411] gi|327181246|gb|AEA33427.1| ATP-dependent hsl protease ATP-binding subunit hslU [Hippea maritima DSM 10411] Length = 450 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/451 (46%), Positives = 310/451 (68%), Gaps = 17/451 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +P++IV LD+YI+GQ++AK+A+AIALR R+RR ++ D+++E+MPKNIL++GPT Sbjct: 1 MEHKLTPKKIVELLDKYIVGQKEAKKAIAIALRTRYRRHKVSGDIKEEIMPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF+KVE +KFTE+GYVGR+VE IIRDL ++ +V++ +V Sbjct: 61 GVGKTEIARRIAKITNAPFVKVEASKFTEVGYVGRDVESIIRDLARISYEMVKQQELKKV 120 Query: 123 REQASINAEERILDALVGKTA------------TSNTREVFRKKLRDGEISDKEIDIEV- 169 ++A AEER+LD LV S TRE FR+KL+ GE+++K I+I + Sbjct: 121 EDKAEKEAEERVLDILVPPVKKRSIYDTEEEERVSRTREKFREKLKSGELNEKIIEITIN 180 Query: 170 ADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 + F A + L NL ++ ++ GRKK +++V++ L +E+ +L Sbjct: 181 PQKPEQMVPFIEVAAAPIDELDSNLKDMLDNLL-PGRKKTRKVTVKEALKILKDEEAQKL 239 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRDLLPLVEGSSVST 286 ID D V +I+ N GIVF+DE DKI+++ S G VSREGVQRDLLP+VEGSSV+T Sbjct: 240 IDKDKVKEKAIEKASNDGIVFIDEIDKIISKSSSTSGPDVSREGVQRDLLPIVEGSSVNT 299 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 +YG I TDHILFIA+GAFH +P+D++PE+QGRFP+RV L+ L K DF IL + ++ LI Sbjct: 300 RYGIIKTDHILFIAAGAFHQVKPSDMIPELQGRFPIRVELRPLTKGDFIRILREPKNALI 359 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QYK L++TEGI + F++D+I+ +A++A +N +IGARRL T++E++LEDISF A D Sbjct: 360 KQYKALLETEGIEIKFSDDAIEKIAEIAEKINKETENIGARRLHTLLEKLLEDISFEAPD 419 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ K + IDA+YV + + D+ +IL Sbjct: 420 IEPKEITIDAKYVGEKLSSIVEDRDLSRYIL 450 >gi|319766229|ref|YP_004131730.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y412MC52] gi|317111095|gb|ADU93587.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. Y412MC52] Length = 464 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/462 (44%), Positives = 309/462 (66%), Gaps = 31/462 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR L LRDE+MPKNIL++GPTGVG Sbjct: 4 TLTPRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVMPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++ Sbjct: 64 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRLVKERKMNEVKDR 123 Query: 126 ASINAEERILDALV-----------------GKTATSNT------------REVFRKKLR 156 A A +R+++ LV G+ A ++ R +L Sbjct: 124 AEQQANKRLVELLVPGKPKQTIKNPLELLFGGQGAQADNSYSHEDEQVEQKRRQVAWQLA 183 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ ++ + IE+ + + +F G +N+ + S +M R+KK R+ V + Sbjct: 184 NGQLENEMVTIEIEEQTPLWFDFLQGAGIEQMGMNMQDALSSLM-PKRRKKRRLKVSEAR 242 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDL 275 L+ +E+ +LIDMD V ++++++ E GI+F+DE DKI + +G VSREGVQRD+ Sbjct: 243 KVLINEEAQKLIDMDEVTQEAVRLAEQSGIIFIDEIDKIARSGAVSGSADVSREGVQRDI 302 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 303 LPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELAKLSVDDFV 362 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T++E+ Sbjct: 363 RILVEPNNALIKQYQALLATEGISLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTILEK 422 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+ F A D+ VVI +YV +G D+ FIL Sbjct: 423 LLEDLLFEAPDIGIDKVVITPQYVEQKLGSIVKNKDLSEFIL 464 >gi|219113601|ref|XP_002186384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583234|gb|ACI65854.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 448 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/450 (46%), Positives = 303/450 (67%), Gaps = 25/450 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P E+V ELDR+I+GQ DAKRAVAIA+RNRWRRQQLP DLR E+ P+N+LLVGPTGVGKT Sbjct: 3 PSEVVHELDRHIVGQHDAKRAVAIAMRNRWRRQQLPEDLRKEVTPRNVLLVGPTGVGKTE 62 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 + RR+A+L APF+KVE TKFTE+GY GR+V+QIIRDL+DV++ + R+ +++R QA Sbjct: 63 VMRRMAKLNDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVSMQLTRKVWTEKLRSQARA 122 Query: 129 NAEERILDALVGK-------TATSNTREVFRKKLRDGEISDKEIDIEV--ADTSSDISNF 179 E+RILD L G T + R+ FR LR G + D+EI++EV D + D+ Sbjct: 123 MVEDRILDLLTGPAQQGKGGTGDARGRDSFRDMLRQGMLDDQEIEVEVPQGDRNPDVGAG 182 Query: 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD--------ESDRLIDMD 231 G S I+ +S+L+ ++ G+ KK +K R+ + +DM Sbjct: 183 G-GDGTSPNIVAMSDLWQRMSGAQGGKKTPSERKKLPISEAREVILEVELEKLLENVDM- 240 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIV-ARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 +++IQ VE GIVF+DE DKI ARD S S EGVQRDLLPL+EG++++TKY Sbjct: 241 --KKEAIQAVEESGIVFIDEIDKICSARDSFSTRSADASAEGVQRDLLPLIEGTTINTKY 298 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G++NTD+ILF+A+GAFH +P+DLLPE+QGR P+RV LK L + D ILT+ +NL+ Q Sbjct: 299 GNVNTDYILFVAAGAFHSVKPSDLLPELQGRLPIRVELKGLTEDDLYRILTEPVANLVRQ 358 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 EL+ +EG+ L+F +D++ +A +A LN T+ +IGARRL TVMER++E++SF A++L Sbjct: 359 QVELIGSEGVSLEFDDDAVREIARMAALLNRTIENIGARRLHTVMERIMEELSFEAAELD 418 Query: 409 EKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437 + ++ +D V+ + + ++D+ +IL Sbjct: 419 KGAILRVDKALVQTRLEESTKKSDLSKYIL 448 >gi|299822641|ref|ZP_07054527.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi DSM 20601] gi|299816170|gb|EFI83408.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria grayi DSM 20601] Length = 462 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/465 (43%), Positives = 306/465 (65%), Gaps = 31/465 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ T +PR+IV +LD+YIIGQ AK++VA+ALRNR+RR + +R+E++PKNIL++G Sbjct: 1 MENTAALTPRQIVEKLDQYIIGQHGAKKSVAVALRNRYRRSLMEETIREEIIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A+L APF K+E TK+TE+GYVGR+VE ++RDLV+V++ IV+E + Sbjct: 61 PTGVGKTEIARRIAKLVKAPFTKIEATKYTEVGYVGRDVESMVRDLVEVSVRIVKEEKMS 120 Query: 121 EVREQASINAEERILDALV-----GKTATSN----------------------TREVFRK 153 EV +A NA++R++ L K+ T+N R+ Sbjct: 121 EVYTRAQKNADKRVIKLLAPAQKKQKSQTTNPFEALFNQQAQEEEEVDAELRGKRDQLLW 180 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILN-LSELFSKVMGSGRKKKIRMSV 212 +L++GE+ D+ + +EV + + + FD+ G+ + +N +S+ S +M KK+ +++V Sbjct: 181 RLQNGELDDQMVTVEVKEQQNPM--FDMLKGSGMDQMNGMSDALSNLMPKQTKKR-KVTV 237 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L DE+ +LID D V I+ E GI+F+DE DKI + VSREGVQ Sbjct: 238 AEARKILHEDEAAKLIDQDEVAALGIERAEQLGIIFIDEIDKITSGSEAGSGQVSREGVQ 297 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS V+TKYG++NT++ILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L + Sbjct: 298 RDILPIVEGSQVATKYGTVNTEYILFIAAGAFHTSKPSDLIPELQGRFPIRVELEKLGQE 357 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ ++ LI QY+ L+KTEGI L FT+++++ LA +A +N +IGARRL T+ Sbjct: 358 DFVKILTEPDNALIKQYRALLKTEGIDLVFTKEAVERLAAIAFEVNQDTDNIGARRLHTI 417 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F A ++ TV I YV + D+ FIL Sbjct: 418 LEKLLEDLLFEAPEITLDTVTITESYVNEKLTSIMQNRDLTEFIL 462 >gi|24215045|ref|NP_712526.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans serovar Lai str. 56601] gi|32129632|sp|Q8F3Q5|HSLU_LEPIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|24196095|gb|AAN49544.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans serovar Lai str. 56601] Length = 479 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/464 (44%), Positives = 308/464 (66%), Gaps = 35/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV++LD +II Q++AK+AVAIALRNR RR++L ++R+E+ PKNI+++GPTGVGK Sbjct: 18 LTPREIVAKLDEHIISQKNAKKAVAIALRNRTRRKKLDPEMREEIYPKNIIMIGPTGVGK 77 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL +++N+V++ R +V E A Sbjct: 78 TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 137 Query: 127 SINAEERILDALVG---------------------------KTATSNTREVFRKKLRDGE 159 AEE +LD L+ KT TRE RKKL+ G+ Sbjct: 138 KQKAEEALLDILLPFPGENKHGSGQITGFATSSTLADEEDRKTHFLETREFMRKKLKTGK 197 Query: 160 ISDKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMG---SGRKKKIRMSVQKC 215 + D+E+++++ + S S + + G ++ +L V+G + KK ++ + + Sbjct: 198 LDDQEVELDLPNPSVSQVPMLQVFGAGNLD--DLDNQLQNVLGDILPKKNKKRKLKIPEA 255 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 L E+++L+D D V R++++ VE GI+FLDE DKI R+ +G VSREGVQRDL Sbjct: 256 LKALEESEAEKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKSGADVSREGVQRDL 315 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF Sbjct: 316 LPIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFE 375 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT S+L QY+ L+ T+GI L+F+ D I +A +A ++N +IGARRL T++ER Sbjct: 376 KILTAPCSSLTRQYEALLSTDGIQLEFSLDGIQEIARIAYDMNEKHENIGARRLNTILER 435 Query: 396 VLEDISFSASDLQE--KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LE++SF DL E + V ID +YV + D+ +IL Sbjct: 436 LLEEVSFEGPDLPESQRKVRIDGKYVTDRLQGVIQNKDLSQYIL 479 >gi|212639572|ref|YP_002316092.1| ATP-dependent protease ATP-binding subunit HslU [Anoxybacillus flavithermus WK1] gi|212561052|gb|ACJ34107.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Anoxybacillus flavithermus WK1] Length = 469 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/461 (44%), Positives = 307/461 (66%), Gaps = 33/461 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IV +LD++I+GQ +AK+AVAIALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 12 LTPKQIVEKLDQFIVGQHEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 71 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E + +EV+EQA Sbjct: 72 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEKKMNEVKEQA 131 Query: 127 SINAEERILDALV-GKTAT--------------------------SNTREVFRKKLRDGE 159 A +R+++ LV GKT + R KL +GE Sbjct: 132 EQLANKRLVELLVPGKTKQPMKNPFELLFGGTQEQADSGHEEQHIAEKRRQIAWKLANGE 191 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQKCYP 217 + D+ + +E+ + + FD+ GA + + N+ ++ S M RKK+ + + Sbjct: 192 LEDELVTVEIEEQQPLM--FDLFQGAGMEQMGVNMQDMLSSFMPKKRKKRKLKVKEARHV 249 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLL 276 L +E+ +LIDMD V +++I++ E GI+F+DE DKI + +G+ VSREGVQRD+L Sbjct: 250 -LANEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKIARKGQAGSSADVSREGVQRDIL 308 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEGS+V TKYG + TD++LFIA+GAFH+++P+DL+PE+QGRFP+RV L L DF Sbjct: 309 PIVEGSTVMTKYGPVKTDYMLFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLTVDDFVK 368 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 IL + + L+ QY L+ TEGI L+F++D+I +A+VA +N +IGARRL T+ME++ Sbjct: 369 ILVEPNNALLKQYVALLATEGIQLEFSDDAIRKIAEVAFEVNQQTDNIGARRLHTIMEKL 428 Query: 397 LEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 LED+ + A D+ + +VI +YV +G+ D+ FIL Sbjct: 429 LEDLLYEAPDVHLEKIVITPQYVEKKLGNIVRNKDLSQFIL 469 >gi|289523579|ref|ZP_06440433.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503271|gb|EFD24435.1| ATP-dependent protease HslVU, ATPase subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 470 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/464 (45%), Positives = 310/464 (66%), Gaps = 37/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P ++++ L+RY+IGQ AK+AVA+ALRNR RR++LP +L E++PKNIL+VGPTGVGK Sbjct: 11 LTPSQVMAYLNRYVIGQTRAKKAVAVALRNRIRRKRLPKELAKEIIPKNILMVGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L APF+KVE +K+TE+GYVGR+VE +IR++ D+A+++V+ + +E A Sbjct: 71 TEIARRLAQLVDAPFVKVEASKYTEVGYVGRDVESMIREMADIAVHMVKSRKIEENSAAA 130 Query: 127 SINAEERILDALVGKTATS------------------------------NTREVFRKKLR 156 AEER+LDAL+ S TRE FRK LR Sbjct: 131 ETLAEERVLDALLPTKHKSRQPQDFMRLLLGDSTEEEEESDETERETKRTTREKFRKLLR 190 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 +G+++D+EI+IEVA+ S +SN G G LNL E+ ++ K+K R++V Sbjct: 191 EGKLNDREIEIEVAE--SPLSNIPFVGAGMEEMGLNLGEMLGGILPKKIKRK-RVTVANA 247 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273 ++E+++LIDMD V ++++ V+ GIVF+DE DKI A G G VSREGVQR Sbjct: 248 LKIFQQEEAEKLIDMDAVVQEALDKVQEEGIVFIDELDKI-ASSGGQKYGPDVSREGVQR 306 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 DLLPLVEG++V TKYG + TDHILFI +GAFH ++P+DL+PE+QGRFP+RV L +L + + Sbjct: 307 DLLPLVEGTTVQTKYGPVKTDHILFIGAGAFHETKPSDLIPELQGRFPIRVELDALEEEE 366 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 IL + E++L+ QYK L++TEGI + F + ++ A+A A +N + +IGARRL T+M Sbjct: 367 LLRILVEPENSLVKQYKALLETEGIEMIFDDGALKAIAFFAAKMNREMENIGARRLHTMM 426 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LEDISF A +L+E+ V ID +V + D TD+ ++L Sbjct: 427 EQLLEDISFKAPELREREVRIDEAFVNERLADLVENTDLRRYLL 470 >gi|91204118|emb|CAJ71771.1| strongly similar to ATP-dependent Hsl protease, ATP-binding subunit [Candidatus Kuenenia stuttgartiensis] Length = 451 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/449 (44%), Positives = 306/449 (68%), Gaps = 21/449 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV ELD+Y+IGQ+ AKRAVAIA+RNRWRR QL +LR+E++PKNI+++GPTGVGK Sbjct: 6 LTPRKIVEELDKYVIGQKSAKRAVAIAIRNRWRRHQLSEELREEILPKNIIMIGPTGVGK 65 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A + APF+K+E +K+TE+GY GR+VE +IRD+ ++ +N+V+ +V+ +A Sbjct: 66 TEIARRMASMVKAPFLKIEASKYTEVGYHGRDVESMIRDITEIGVNMVKAEMVKDVQGKA 125 Query: 127 SI----------------NAEERILDALVGKTATS-NTREVFRKKLRDGEISDKEIDIEV 169 N+E+ + V K TRE RKKLRDG ++++ +++ V Sbjct: 126 EELAEERLLDLLLPPTPKNSEKMDKEKEVAKEDQRIKTREKLRKKLRDGALANRTVELTV 185 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 + S + F + G +GI + + K M R + + V + L+++E+++LID Sbjct: 186 HEKSYVLQGF-VTGVEDMGI-DFQNMMEK-MIPPRAQVRKAPVAEAKRILIQEEAEKLID 242 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + +++I+ E +GI+FLDE DKI R++ G VSREGVQRDLLP+VEG++V+T+YG Sbjct: 243 KEKAIQEAIRRTEQFGIIFLDEIDKIAGRETSRGPDVSREGVQRDLLPIVEGTTVNTRYG 302 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TD ILF+A+GAFHVS+P+DL+PE+QGRFP+RV L+ L K +F ILT+ ++ L+ QY Sbjct: 303 IVKTDRILFVAAGAFHVSKPSDLIPELQGRFPIRVELEDLGKEEFLRILTEPKNALLKQY 362 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ- 408 K L++TEGI + F +++I+ + ++AV +N +IGARRL TV+E++LED SF A D++ Sbjct: 363 KSLLETEGIKVHFKKEAIETITEIAVQVNKRTQNIGARRLHTVLEKLLEDASFDAPDMEG 422 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K V+ID +YV + + D+ +IL Sbjct: 423 GKEVIIDDKYVNDKLQAIVKDEDLSRYIL 451 >gi|222151087|ref|YP_002560241.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus caseolyticus JCSC5402] gi|222120210|dbj|BAH17545.1| ATP-dependent hsl protease ATP-binding subunit [Macrococcus caseolyticus JCSC5402] Length = 457 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/463 (42%), Positives = 304/463 (65%), Gaps = 41/463 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +PR+IVS LD +IIGQQDAKR VA++LRNR+RR L +++ E++PKNIL++GPTGVG Sbjct: 5 NLTPRQIVSHLDEHIIGQQDAKRKVAVSLRNRYRRMALDDEIQKEVIPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L GAPF+KVE TK+TE+GYVGR+VE +IRDL + + +++E ++ EV E+ Sbjct: 65 KTEIARRMAKLVGAPFVKVEATKYTEVGYVGRDVESMIRDLTENGVRLIKEKKKQEVLEE 124 Query: 126 ASINAEERILDALVGKTATSNT----------------------------REVFRKKLRD 157 A NAEER++ LV R+ + +L+ Sbjct: 125 AKRNAEERLVKLLVPAMKKKENKAGNPFEMLFNQTIQEEEDAPDEQVKLKRKDIQAQLKA 184 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKC 215 G++ D+ + I+V ++ F G + + ++FS++M KKK+ + V Sbjct: 185 GKLEDETVKIKVEQEFKGLNMF----GMDMQNNQMQDMFSQMMP---KKKVERTLKVSDA 237 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN-GIGVSREGVQRD 274 L+ +E+ +LID +++H +++ + E GIVF+DE DKI GN G VSR+GVQRD Sbjct: 238 REVLIDEEATKLIDEESMHSEAVALTEQLGIVFIDEIDKIAG---GNQGPDVSRQGVQRD 294 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS V TKYG++NT+HILFI +GAFHVS+P+DL+PE+QGRFP+RV L L+ DF Sbjct: 295 ILPIVEGSVVQTKYGAVNTEHILFIGAGAFHVSKPSDLIPELQGRFPIRVELDKLSVDDF 354 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 + IL + + +L+ QY+ L+ TE + ++FT+++ID LA+++ +N +IGARRL T++E Sbjct: 355 KRILKEPKLSLLKQYESLLATEDVTINFTDEAIDRLAEMSYEVNQETDNIGARRLHTILE 414 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ F AS++ V I A+YV +G+ ++ FIL Sbjct: 415 KMLEDLLFEASEMPNAHVDITAQYVDAKLGNITKNKNLSEFIL 457 >gi|288553070|ref|YP_003425005.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus pseudofirmus OF4] gi|288544230|gb|ADC48113.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus pseudofirmus OF4] Length = 464 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/463 (42%), Positives = 302/463 (65%), Gaps = 33/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV L++YI+GQ+ AK++VAIALRNR+RR L L++E+ PKNIL++GPTGVG Sbjct: 4 NLTPKQIVERLNQYIVGQEGAKKSVAIALRNRYRRSLLEDKLKEEVTPKNILMIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ I++E + + V+E+ Sbjct: 64 KTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVESSVRILKEEKMEGVKEE 123 Query: 126 ASINAEERILDALVGKTATSNT------------------------------REVFRKKL 155 A +A ER+++ LV +T R +L Sbjct: 124 ALRHANERLVELLVPSNKKQSTYKNPFEMLFNQPGQQQPDDSNGEEEGMKEQRRRMAHQL 183 Query: 156 RDGEISDKEIDIEVADTSSDISN-FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 GE+ D+ + IEV + + + F G +G +N+ ++ M ++KK +M V + Sbjct: 184 ALGELEDRIVTIEVEEQTQQFMDMFQGAGMEQMG-MNMQDMLGS-MIPKKRKKRKMPVSE 241 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L +E+ +LIDMD V + +++ E GI+F+DE DK+ + SG VSREGVQRD Sbjct: 242 ARNVLAEEEAQKLIDMDEVTQLAVERAEQLGIIFIDEIDKVAGKSSGQSADVSREGVQRD 301 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS++ TKYG++ TDHILFI +GAFH+++P+DL+PE+QGRFP+RV LK+L DF Sbjct: 302 ILPIVEGSTIVTKYGAVKTDHILFIGAGAFHIAKPSDLIPELQGRFPIRVELKNLTVDDF 361 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL + ++ L+ QY L++TEGI + FT+D++ +A +A +N +IGARRL T++E Sbjct: 362 VRILVEPDNALLKQYSALLQTEGIKVTFTDDAVRKIATIATEVNQDTENIGARRLHTMLE 421 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+SF A+D+ + +VI EYV + D+ +IL Sbjct: 422 KLLEDLSFEAADITLEEIVITPEYVEEKLATIAKNRDLSQYIL 464 >gi|255322166|ref|ZP_05363312.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae RM3277] gi|255300539|gb|EET79810.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter showae RM3277] Length = 440 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/446 (44%), Positives = 301/446 (67%), Gaps = 19/446 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+DAK+ +AIALRNR+RR +L ++D++MPKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL ++N+V+ +R++ RE Sbjct: 61 GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKAEQREKNRE 120 Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174 + +++I+ L+ T + E +L +G++ D I+IE+ S Sbjct: 121 KIDEYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEIVQNS- 179 Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 FD + + E F K++G S + K M V+ L + SD+++DM+++ Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 ++++ EN GI+F+DE DK VA SGN S+EGVQRDLLP+VEGS+V+TK+G+I Sbjct: 236 KTEAVRRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAI 294 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++ ILT +++L+ QY+ Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEA 354 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+KTE + L FT+D+I A+A +A N N + DIGARRL TV+ERV+EDISF A++ +T Sbjct: 355 LLKTENVELKFTDDAIKAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGET 414 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 + +D V + D + D+ +IL Sbjct: 415 IEVDKALVGKRLSDVVEDQDLARYIL 440 >gi|260655109|ref|ZP_05860597.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi E3_33 E1] gi|260630220|gb|EEX48414.1| ATP-dependent protease HslVU, ATPase subunit [Jonquetella anthropi E3_33 E1] Length = 462 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 213/460 (46%), Positives = 299/460 (65%), Gaps = 34/460 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P IV+ LDRYI+GQ +AKRAVA+ALRNR RR++LP +L E+ PKNIL+VGPTGVG Sbjct: 9 SLQPAAIVAYLDRYIVGQTEAKRAVAVALRNRVRRRRLPEELAAEITPKNILMVGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA L APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+E E + Sbjct: 69 KTEIARRLASLVQAPFVKVEATKFTEVGYVGRDVESMVRDLVEAAVRMVKERMAAEKTDS 128 Query: 126 ASINAEERILDALV----------------------------GKTATSNTREVFRKKLRD 157 A+ A ER++D LV G +TR+ R+ L + Sbjct: 129 AASAARERMIDYLVPVKRSGEGGGIPTFMSYLKGVEADEPSQGPEMKDSTRDKMRRLLEE 188 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 G++ D+E++IEV +T + D +++G+ N+ E+ M R K+ R+ V+ Sbjct: 189 GKLDDREVEIEVQETPP-ATGMD---QSAMGV-NIGEMLGSFMPK-RTKRRRVKVKDGLR 242 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L +E+++LID D H+++I+ ++ GI+F+DE DK+VA ++ G VSREGVQRDLLP Sbjct: 243 ILQAEEAEKLIDTDRAHQEAIKSAQDEGIIFIDEIDKVVASENRGGADVSREGVQRDLLP 302 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEG +V TKYG + TDH+LFIA+GAF +P+DL+PE+QGR P+RV L +L K D I Sbjct: 303 IVEGCTVPTKYGPVKTDHMLFIAAGAFQSVKPSDLVPELQGRLPLRVELSALRKEDLSKI 362 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ NL+ QYK L+ TEG+ L FT D ID LA++A N +IGARRL T++ERVL Sbjct: 363 LTEPRHNLLDQYKALLSTEGVELCFTADGIDRLAELAERTNRESENIGARRLHTMLERVL 422 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SFSASD +TV ID V + D + D+ ++L Sbjct: 423 EDVSFSASDYAGQTVTIDRAAVDKKLADIAANVDLRRYLL 462 >gi|313609076|gb|EFR84790.1| ATP-dependent protease HslVU, ATPase subunit [Listeria monocytogenes FSL F2-208] Length = 472 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 7 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 67 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 245 VSVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472 >gi|329121220|ref|ZP_08249847.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister micraerophilus DSM 19965] gi|327470154|gb|EGF15617.1| ATP-dependent hsl protease ATP-binding subunit HslU [Dialister micraerophilus DSM 19965] Length = 454 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/457 (44%), Positives = 300/457 (65%), Gaps = 31/457 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV LD+YIIGQ++AK++VAIALRNRWR +L +++ E+ PKNILL+GPTGVG Sbjct: 4 TLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116 KT I+RRLA L APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++ Sbjct: 64 KTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKLGKN 123 Query: 117 SRRDEVREQASI-----NAEER-ILDALVGKTATS----------NTREVFRKKLRDGEI 160 S+ + +++ A I E R +D + G+ RE F +++R+GE+ Sbjct: 124 SQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRNGEM 183 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 ++ I+IEV D D I+ ++++ S +M KKK Sbjct: 184 DERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAAKKI-FA 237 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 + +D ++DM+TV +I++ + GI+F+DE DKI + G GVSREGVQRD+LP+VE Sbjct: 238 EEAADEMLDMETVKEKAIEVAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILPIVE 297 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R IL + Sbjct: 298 GATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKILIE 357 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 LILQY L++TEG+ ++F + ++DA++++A +N+ +IGARRL T++E+VLEDI Sbjct: 358 PRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVLEDI 417 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A D+ EK +V+D YVR +G D+ ++IL Sbjct: 418 SFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454 >gi|257459459|ref|ZP_05624568.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter gracilis RM3268] gi|257442884|gb|EEV18018.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter gracilis RM3268] Length = 438 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/444 (45%), Positives = 306/444 (68%), Gaps = 19/444 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IV +LD YIIGQ AKR +A+ALRNR+RR L ++++E+MPKNIL++G TGVGK Sbjct: 1 MTPKQIVEKLDEYIIGQNSAKRTIAVALRNRYRRMALEDEMKNEVMPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR----ESRRDEV 122 T I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL ++N+VR E +D++ Sbjct: 61 TEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVRGEEFEKNKDKI 120 Query: 123 REQASINAEERILDAL---VGKTATSNTREVFRK---KLRDGEISDKEIDIEVADTSSDI 176 + E++L L + ++ + + K KL G++ D I+IEV++ + + Sbjct: 121 DDYIKRKILEKVLPPLPRGASEEKIADYEKSYEKMAAKLERGDLDDLSIEIEVSENALE- 179 Query: 177 SNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 SN ++P + N+ E F KV+G S RK K M V+ L + S++++DM+++ Sbjct: 180 SNPNLPPE----MANMQESFIKVIGISTRKSKKEMKVKDAKVALKSEASEKVLDMESIKA 235 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 ++++ +N GI+F+DE DK VA SGN S+EGVQRDLLP+VEGSSVSTK+G+I+T Sbjct: 236 EAVRRAQNEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSSVSTKFGNIDT 294 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++ ILT +++L+ QY L+ Sbjct: 295 DHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEAALCEILTKPKNSLLKQYSALL 354 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 KTEG+ L+F+ED + A+A A + N V DIGARRL T+ME+VLEDISF A + + +V Sbjct: 355 KTEGVELEFSEDGVKAIAKFAASTNEKVEDIGARRLHTIMEKVLEDISFEADKFKGQKIV 414 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 +D + V + S+ D+ +IL Sbjct: 415 VDEKLVSEKLAGIASDEDLAKYIL 438 >gi|323489574|ref|ZP_08094801.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus donghaensis MPA1U2] gi|323396705|gb|EGA89524.1| ATP-dependent protease ATP-binding subunit HslU [Planococcus donghaensis MPA1U2] Length = 465 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/466 (43%), Positives = 306/466 (65%), Gaps = 30/466 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK + +PR+I + LDRYI+GQ+DAKR++AIALRNR+RR +L ++R E++PKNIL++G Sbjct: 1 MKNQSDLTPRQITNHLDRYIVGQKDAKRSIAIALRNRYRRSRLDEEMRGEVIPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ IV+E + + Sbjct: 61 PTGVGKTEIARRIAKLTGAPFIKVEATKFTEVGYVGRDVESMVRDLVEAAVRIVKEEKYE 120 Query: 121 EVREQASINAEERILDALVGKTATSNTRE-----VFRKKLRDG----------EISDKEI 165 V+ QA A ERI+ L T + +F +KL + +EI Sbjct: 121 AVKFQAETAANERIVKLLAPSLRKKQTNQNPLEMIFGQKLEQEEEEPTAEVEVRVKRREI 180 Query: 166 DIEV------------ADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMS 211 ++ + +S FD G+ + + N+ + FS +M +KK+ Sbjct: 181 AADLKAGKLEEEWVTVEVVENSLSMFDALQGSGMEQMGANMQDAFSSLMPKKKKKRRLRV 240 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 + L +E+ +LID + V ++I+ E +GI+F+DE DKI ++ + + VSREGV Sbjct: 241 KE-ARRVLTTEEAAKLIDDEEVGMEAIERAEQHGIIFIDEMDKIASKSNSSSADVSREGV 299 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+VSTKYG++ TD++LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ L Sbjct: 300 QRDILPIVEGSTVSTKYGAVKTDYMLFVAAGAFHMSKPSDLIPELQGRFPIRVELQKLEV 359 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + +LI QYK L++TEGI++ F++ SI LA++A +N +IGARRL T Sbjct: 360 EDFVKILTEPKHSLINQYKALLETEGIVVHFSDASIIRLAEIAYEVNQDTDNIGARRLHT 419 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ER+LED+SF AS++ + I +YV + + D+ FIL Sbjct: 420 ILERLLEDLSFEASEISPAQIDITVQYVNEKLENVAKNKDLSQFIL 465 >gi|116872712|ref|YP_849493.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466231|sp|A0AI82|HSLU_LISW6 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|116741590|emb|CAK20714.1| heat shock protease HslVU, ATPase subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 469 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 307/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERIL------------------DALVGKTATS-------------NTRE 149 VR +A NAE+R++ +AL G S N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQSEETTEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMKNKDLTQFIL 469 >gi|311748240|ref|ZP_07722025.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1] gi|126576732|gb|EAZ80980.1| ATP-dependent protease HslVU, ATPase subunit [Algoriphagus sp. PR1] Length = 464 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/466 (45%), Positives = 305/466 (65%), Gaps = 31/466 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ + +PR+IV ELD+YIIGQ+DAKR VAIALRNR RR + +D++ +++P NIL++G Sbjct: 1 MEQIISLTPRQIVGELDKYIIGQKDAKRNVAIALRNRIRRLMVKSDIQKDIVPNNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 TGVGKT I+RRLA++A APF KVE +KFTE+GYVGR+VE ++RDLV+ A+ +VRE + + Sbjct: 61 STGVGKTEIARRLAKVANAPFTKVEASKFTEVGYVGRDVESMVRDLVEQAVALVREEKNE 120 Query: 121 EVREQASINAEERILDALVGKTATSN-----------------------TREVFRKKLRD 157 V+ +A+ EE ILD L+ ++ TRE FR+KLR+ Sbjct: 121 AVKAKAAEAVEELILDILIPPVKSAGFTRNAVPADTNSEPNTDEELNERTRERFREKLRN 180 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKC 215 GE+ D++++I V +S + + G + +++ L + G + KK ++S+ + Sbjct: 181 GELDDRKVEINVKASSP--TGIGMIGNGMIDDASMAGLQDMIWGMMPKKTKKRKLSISEA 238 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQR 273 LM +E RLID D V ++I++ EN GI+F+DE DKI ++ NG G VSREGVQR Sbjct: 239 RKVLMEEEVSRLIDFDEVKEEAIKLAENNGIIFIDEIDKIASKSGKNGGGPDVSREGVQR 298 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 DLLP+VEGSSV+TKYG INTDHILFIA+GAFHV++P+DL+PE+QGRFP+RV L+SL + D Sbjct: 299 DLLPIVEGSSVNTKYGVINTDHILFIAAGAFHVAKPSDLIPELQGRFPIRVELQSLTQED 358 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F +IL + ++ L QY+ L + E + L+F E+SID +A +A +N V +IGARRL TVM Sbjct: 359 FAMILREPKNALTKQYQALFEAEEVYLEFNEESIDEIARLAFLINQEVENIGARRLHTVM 418 Query: 394 ERVLEDISFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +L D F D +++ E V+ + D+ +IL Sbjct: 419 SHLLNDFLFDVPDTIKANSKIMVTKEMVQERLSSLVQNRDLSQYIL 464 >gi|313892602|ref|ZP_07826189.1| ATP-dependent protease HslVU, ATPase subunit [Dialister microaerophilus UPII 345-E] gi|313118999|gb|EFR42204.1| ATP-dependent protease HslVU, ATPase subunit [Dialister microaerophilus UPII 345-E] Length = 454 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/457 (44%), Positives = 299/457 (65%), Gaps = 31/457 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR+IV LD+YIIGQ++AK++VAIALRNRWR +L +++ E+ PKNILL+GPTGVG Sbjct: 4 TLTPRKIVEYLDQYIIGQKEAKKSVAIALRNRWRSSRLSQEMKKEVSPKNILLIGPTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE--------- 116 KT I+RRLA L APF KVE TK+TE+GYVGR+VE ++RDLV+ +I +V++ Sbjct: 64 KTEIARRLASLTKAPFCKVEATKYTEVGYVGRDVESMVRDLVEESIRLVKKKEIGKLGKN 123 Query: 117 SRRDEVREQASI-----NAEER-ILDALVGKTATS----------NTREVFRKKLRDGEI 160 S+ + +++ A I E R +D + G+ RE F +++R+GE+ Sbjct: 124 SQEEAIKKIAEILWPTKKVESRSPMDIIFGEKEEKKEEIIDENKLKKREAFIERIRNGEM 183 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 ++ I+IEV D D I+ ++++ S +M KKK Sbjct: 184 DERVIEIEVVDKGGSEGFQD-----GENIIQITQVISSMMPKKTKKKKVTVKAAKKI-FA 237 Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 + +D ++DM+TV +I+ + GI+F+DE DKI + G GVSREGVQRD+LP+VE Sbjct: 238 EEAADEMLDMETVKEKAIEAAQERGIIFIDEIDKIAEKGRNGGPGVSREGVQRDILPIVE 297 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G++V TKYG +NT+HILFIA+GAFHVS+P DL+PE+QGRFP+RV L++L K D R IL + Sbjct: 298 GATVKTKYGPVNTEHILFIAAGAFHVSKPGDLIPELQGRFPIRVELQNLTKEDLRKILIE 357 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 LILQY L++TEG+ ++F + ++DA++++A +N+ +IGARRL T++E+VLEDI Sbjct: 358 PRQALILQYTALLETEGLKVNFADSALDAISEIAFRVNTETENIGARRLYTILEKVLEDI 417 Query: 401 SFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A D+ EK +V+D YVR +G D+ ++IL Sbjct: 418 SFEAPDMVEKNIVVDDVYVREKLGKIIENIDISNYIL 454 >gi|269792951|ref|YP_003317855.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100586|gb|ACZ19573.1| heat shock protein HslVU, ATPase subunit HslU [Thermanaerovibrio acidaminovorans DSM 6589] Length = 460 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/462 (45%), Positives = 299/462 (64%), Gaps = 32/462 (6%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +PR +V LDR+I+GQ AKRAVA+ALRNR RR++LP +L E+ PKNIL+VGPTGV Sbjct: 2 MDLTPRMVVEYLDRHIVGQSKAKRAVAVALRNRIRRRRLPEELAREVYPKNILMVGPTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+VA +VR R +EV Sbjct: 62 GKTEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVEVAFQMVRSRRLEEVSP 121 Query: 125 QASINAEERILDALVGKTAT-----------------------------SNTREVFRKKL 155 +A AEER+LDAL+ S TRE R+ L Sbjct: 122 EARRRAEERVLDALLPSPKPRTEGLNFLKLLGVEGSQEEAAPEEPDERRSATREKLRELL 181 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R ++ ++ +++EV + S + N + G L+L ++ + R ++ M+V K Sbjct: 182 RARKLDERTVEVEVFE--SPLPNVAVMGPMGGEGLDLGDMLGGLFPK-RPRRKSMTVAKA 238 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 EL DE+D+L+D +++ R+++++ E GIVF+DE DKI + + +G VSREGVQRDL Sbjct: 239 LEELEADEADKLLDRESLSREAVRLAEEEGIVFIDEMDKIASSGASHGPDVSREGVQRDL 298 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LPLVEG+ V+TKYG + TDH+LFIA+GAFH +P+DL PE+QGRFP+RV L+ L + D Sbjct: 299 LPLVEGTVVNTKYGPVRTDHVLFIAAGAFHKVKPSDLAPELQGRFPIRVELEPLGEEDLY 358 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + + +L +QY EL++T+G+ L F ++ + +A +A +N + DIGARRL T+ME Sbjct: 359 RILVEPQGSLTVQYGELLRTDGVELKFLDEGLREVAQMAHRMNREMEDIGARRLHTLMEM 418 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +LED+SF A D V +D EYV +G E D ++L Sbjct: 419 LLEDLSFEAPDGVRGEVTVDREYVASRVGGLLEERDPRRYLL 460 >gi|217964578|ref|YP_002350256.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes HCC23] gi|254802309|sp|B8DG52|HSLU_LISMH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|217333848|gb|ACK39642.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes HCC23] gi|307570858|emb|CAR84037.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria monocytogenes L99] Length = 469 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|315302918|ref|ZP_07873651.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL F6-596] gi|313628714|gb|EFR97114.1| ATP-dependent protease HslVU, ATPase subunit [Listeria ivanovii FSL F6-596] Length = 469 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 307/466 (65%), Gaps = 33/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 LT +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LTSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERILDALV-----GKTAT--------------------------SNTREVF 151 R +A NAE+R++ L +TA+ N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTASPNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++ Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID + + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIELIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A ++ ++V + YV + D+ FIL Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMKNRDLTQFIL 469 >gi|159901849|gb|ABX10584.1| ATP-dependent protease ATP-binding subunit [uncultured planctomycete 5H12] Length = 477 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/458 (43%), Positives = 302/458 (65%), Gaps = 34/458 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PRE+V +LDRYI+GQ AKRAV+IA+RNRWRRQQLP DL+ E+ PKNIL++G TGVGKT Sbjct: 26 TPRELVEQLDRYIVGQARAKRAVSIAIRNRWRRQQLPDDLKGEVAPKNILMIGSTGVGKT 85 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA+L APFIKVE TK+TE+GY GR+VE ++R+LV+ +I+++R + + V A Sbjct: 86 EIARRLAKLTDAPFIKVEATKYTEVGYYGRDVESMVRELVENSISLIRATEKQRVETLAR 145 Query: 128 INAEERILDALV--------------GKTAT--------SNTREVFRKKLRD----GEIS 161 ++++LD L G ++T S++ E R K++D GE+ Sbjct: 146 DRTDDKLLDLLAPRPKAYEFQPAGQDGASSTEAVAVELESDSYERTRAKMKDMLVAGELE 205 Query: 162 DKEIDIEVADTSSDISNFDIPGGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPEL 219 ++++++ + S + + GG V +++ + K+M + ++V + + Sbjct: 206 ERQVELTIEQKSQPV----MMGGVGVEQMDMDFQGMLEKIMPKNTVTR-SLTVAEARKVV 260 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 + D L+D D ++ +I ++ GI+FLDE DK++A D G G VSR+GVQRDLLP+V Sbjct: 261 FDQQCDSLLDQDKINEMAIVQAQDMGIIFLDELDKVIASD-GKGTDVSRQGVQRDLLPIV 319 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG++V TKYG + TDHILF+A+GAFH +P+DL+PE+QGRFP+RV L L K DF ILT Sbjct: 320 EGTTVQTKYGYVKTDHILFVAAGAFHKHQPSDLMPELQGRFPIRVELDDLTKKDFVQILT 379 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + +++L QY L+KTEG+ L+FT+D+++ALA+ A +N T +IGARRL T++E++LE+ Sbjct: 380 EPKNSLTRQYAALLKTEGVELEFTQDAVEALAEYAFQVNQTTQNIGARRLYTILEQLLEE 439 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF + D++ V I+ YV + + D+ FIL Sbjct: 440 LSFESPDMKMGKVEINGPYVSDRLAAIADDEDLSRFIL 477 >gi|224499050|ref|ZP_03667399.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes Finland 1988] Length = 469 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/469 (42%), Positives = 307/469 (65%), Gaps = 35/469 (7%) Query: 2 KLTF--NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59 KLT +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++ Sbjct: 3 KLTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMI 62 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 63 GPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKM 122 Query: 120 DEVREQASINAEERI------------------LDALVG-------------KTATSNTR 148 VR +A NAE+R+ L+AL G N R Sbjct: 123 QLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKR 182 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK Sbjct: 183 SQIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKR 240 Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 +++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSR Sbjct: 241 KVTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSR 300 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L Sbjct: 301 EGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDK 360 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARR Sbjct: 361 LTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARR 420 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 421 LHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|47097540|ref|ZP_00235077.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes str. 1/2a F6854] gi|47014088|gb|EAL05084.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes str. 1/2a F6854] Length = 472 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 7 LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 66 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 67 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 126 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 127 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 186 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 187 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 244 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 245 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 304 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 305 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 364 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 365 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 424 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 425 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 472 >gi|23099005|ref|NP_692471.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus iheyensis HTE831] gi|32129626|sp|Q8CXH1|HSLU_OCEIH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|22777233|dbj|BAC13506.1| ATP-dependent Clp protease (heat-shock protein HslU) [Oceanobacillus iheyensis HTE831] Length = 465 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 307/469 (65%), Gaps = 38/469 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +++PR+IV +LD++I+GQ+ AK++VA+ALRNR+RR +L RDE++PKNIL++GPT Sbjct: 1 MGMDYTPRQIVEQLDQFIVGQKQAKKSVAVALRNRYRRMKLDEGFRDEIVPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV++A+ +V+E + V Sbjct: 61 GVGKTEIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVEMAVRMVKEEKMAGV 120 Query: 123 REQASINAEERILDALV----GKTATSNTREVF------------------------RKK 154 +A A +R++ LV K A N E+ RK+ Sbjct: 121 MNEAEEEANKRLVKLLVPESKKKPAMKNPFEMLFQSDGSDGDDETTEQDSHDEIRSKRKR 180 Query: 155 LRD----GEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKI 208 + GE+ D + +E+ + S FD+ G+ + + N+ + F + M +KKK Sbjct: 181 IAHQLALGELEDHIVSVEIDEVPP--SMFDMLQGSGMEQMGMNMQDAFGQFMPK-KKKKR 237 Query: 209 RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 + V + L + E+ +L+DMD V +++ E GI+F+DE DK+ + N VSR Sbjct: 238 NLPVSEARKVLTQQEAQKLVDMDEVAQEATSRAEGSGIIFIDEIDKVAGKQE-NAANVSR 296 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS+V TK+G++ TDH+LF+A+GAFH+S+P+DL+PE+QGRFP+RV L+ Sbjct: 297 EGVQRDILPIVEGSTVVTKHGTVKTDHMLFVAAGAFHMSKPSDLIPELQGRFPIRVELEK 356 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF+ ILT+ + LI QY+ +++TEGI ++FT+++I+ LA++A +N +IGARR Sbjct: 357 LTVEDFKRILTEPSNALIKQYQLMLQTEGINVEFTDEAIERLAEIAYQVNQNTDNIGARR 416 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LED+S+ A ++ + V I YV + + D+ FIL Sbjct: 417 LHTILEKLLEDLSYEAPEITMEKVEITVGYVDDKLSSIVQDKDLSQFIL 465 >gi|16803319|ref|NP_464804.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes EGD-e] gi|224501776|ref|ZP_03670083.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes FSL R2-561] gi|254829964|ref|ZP_05234619.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes 10403S] gi|21759169|sp|Q8Y7J8|HSLU_LISMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|16410695|emb|CAC99357.1| clpY [Listeria monocytogenes EGD-e] Length = 469 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|226223882|ref|YP_002757989.1| ATP-dependent Clp protease-like protein [Listeria monocytogenes Clip81459] gi|254824660|ref|ZP_05229661.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes FSL J1-194] gi|254852667|ref|ZP_05242015.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes FSL R2-503] gi|254932404|ref|ZP_05265763.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes HPB2262] gi|254994004|ref|ZP_05276194.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes FSL J2-064] gi|300765315|ref|ZP_07075299.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes FSL N1-017] gi|62286832|sp|Q720E2|HSLU_LISMF RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|259491375|sp|C1L2I7|HSLU_LISMC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|225876344|emb|CAS05053.1| Putative ATP-dependent Clp protease-like protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605985|gb|EEW18593.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes FSL R2-503] gi|293583961|gb|EFF95993.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes HPB2262] gi|293593899|gb|EFG01660.1| ATP-dependent hsl protease ATP-binding subunit hslU [Listeria monocytogenes FSL J1-194] gi|300513998|gb|EFK41061.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes FSL N1-017] Length = 469 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERI------------------LDALVG-------------KTATSNTREVF 151 R +A NAE+R+ L+AL G N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++ Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 424 ILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|224476377|ref|YP_002633983.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus carnosus subsp. carnosus TM300] gi|254802318|sp|B9DPG6|HSLU_STACT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|222420984|emb|CAL27798.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus carnosus subsp. carnosus TM300] Length = 468 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/470 (42%), Positives = 306/470 (65%), Gaps = 48/470 (10%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAK+ VAIALRNR+RR QL +++ E++PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSQLNEYIVGQNDAKKKVAIALRNRYRRSQLDEEMKQEIVPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E R+D+V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEDRKDKVKDEA 127 Query: 127 SINAEERILDALV---GKTATSNTREVF-------------------------------- 151 A ++++ LV K A N F Sbjct: 128 VKKANDKLVKLLVPSMKKKANQNAGNPFESIFGGMMPNFGNNDEEDEEPPTEDIKTKRSE 187 Query: 152 -RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR 209 R +L +G++ ++++ I+V PG + N ++ +M KKK+ Sbjct: 188 IRSQLLNGQLEEEKVRIKVEQD---------PGALGMLGTNQNQQVQDMMNQLMPKKKVE 238 Query: 210 MSVQ-KCYPELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 V K +++ DE +D LID +T +++++++ E GI+F+DE DK+ + + G G VS Sbjct: 239 REVPVKTARKILADEYADELIDHETANQEALELAEQMGIIFIDEIDKVASNNQGGGQDVS 298 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 R+GVQRD+LP+VEGS V TKYGS+NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 299 RQGVQRDILPIVEGSVVQTKYGSVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELD 358 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 SL+ DF IL + + +LI QY+ L++TE + ++FT+++I LA++A +N +IGAR Sbjct: 359 SLSVDDFVNILKEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDNIGAR 418 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+S+ A + V I A+YV + + D+ FIL Sbjct: 419 RLHTILEKMLEDLSYEAPGMPNAVVDITAQYVDDKLKSISTNKDLSAFIL 468 >gi|328475123|gb|EGF45907.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes 220] gi|332311724|gb|EGJ24819.1| ATP-dependent protease ATPase subunit HslU [Listeria monocytogenes str. Scott A] Length = 469 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERI------------------LDALVG-------------KTATSNTREVF 151 R +A NAE+R+ L+AL G N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++ Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDELTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 424 ILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|313623985|gb|EFR94084.1| ATP-dependent protease HslVU, ATPase subunit [Listeria innocua FSL J1-023] Length = 469 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/468 (42%), Positives = 310/468 (66%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERI------------------LDALVG------KTAT-------SNTRE 149 VR +A NAE+R+ L+AL G +TA N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDETAEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + FD+ G + ++ + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469 >gi|254828642|ref|ZP_05233329.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165] gi|254898556|ref|ZP_05258480.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes J0161] gi|254911953|ref|ZP_05261965.1| heat shock protein HslVU [Listeria monocytogenes J2818] gi|254936280|ref|ZP_05267977.1| heat shock protein HslVU [Listeria monocytogenes F6900] gi|284801664|ref|YP_003413529.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5578] gi|284994806|ref|YP_003416574.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5923] gi|258601041|gb|EEW14366.1| heat shock protein HslVU [Listeria monocytogenes FSL N3-165] gi|258608869|gb|EEW21477.1| heat shock protein HslVU [Listeria monocytogenes F6900] gi|284057226|gb|ADB68167.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5578] gi|284060273|gb|ADB71212.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5923] gi|293589915|gb|EFF98249.1| heat shock protein HslVU [Listeria monocytogenes J2818] Length = 469 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/468 (42%), Positives = 306/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESAEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 469 >gi|46907506|ref|YP_013895.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes serotype 4b str. F2365] gi|46880774|gb|AAT04072.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes serotype 4b str. F2365] gi|328468568|gb|EGF39568.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes 1816] Length = 463 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/463 (42%), Positives = 304/463 (65%), Gaps = 33/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPTGVG Sbjct: 3 QLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + VR + Sbjct: 63 KTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLVRVK 122 Query: 126 ASINAEERI------------------LDALVG-------------KTATSNTREVFRKK 154 A NAE+R+ L+AL G N R + Sbjct: 123 AEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRSQIEWR 182 Query: 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++V++ Sbjct: 183 LQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVTVRE 240 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L DE+ +LID D + + I E G++F+DE DKI +++ G VSREGVQRD Sbjct: 241 AKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRD 300 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + DF Sbjct: 301 ILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDF 360 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T++E Sbjct: 361 YKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILE 420 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 421 KLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 463 >gi|16800386|ref|NP_470654.1| ATP-dependent protease ATP-binding subunit HslU [Listeria innocua Clip11262] gi|21759184|sp|Q92C73|HSLU_LISIN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|16413791|emb|CAC96549.1| clpY [Listeria innocua Clip11262] Length = 469 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/468 (42%), Positives = 307/468 (65%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERI------------------LDALVGKTAT-------------SNTRE 149 VR +A NAE+R+ L+AL G N R Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGSMNQPDEPAEEEVDQELKNKRS 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + FD+ G + ++ + M +KKK + Sbjct: 184 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMSGMQDALSGMFPAKKKKRK 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 242 VTVREAKKILFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 302 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 362 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + + D+ FIL Sbjct: 422 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTQFIL 469 >gi|15615026|ref|NP_243329.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus halodurans C-125] gi|11133072|sp|Q9KA27|HSLU_BACHD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|10175083|dbj|BAB06182.1| ATP-dependent Clp protease (heat-shock protein) [Bacillus halodurans C-125] Length = 464 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/464 (44%), Positives = 302/464 (65%), Gaps = 37/464 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV LD+YI+GQ+ AKR+VAIALRNR+RR QL LRDE+ PKNIL++GPTGVGK Sbjct: 5 LTPRQIVERLDQYIVGQEGAKRSVAIALRNRYRRFQLEDKLRDEITPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +V+E + V++QA Sbjct: 65 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVETSVRLVKEEKMKGVKKQA 124 Query: 127 SINAEERILDALV-GKTATS---------------NT---------------REVFRKKL 155 A +RI++ LV K T NT R +L Sbjct: 125 EEQANQRIVELLVPAKKKTQAYKNPLEMLFGQQQENTDHQETSAEQDTLTERRRRMSHQL 184 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL--NLSELFSKVMGSGRKKKIRMSVQ 213 GE+ D + +EV + + FD+ G+ + + N+ E+ +M ++KK +++V+ Sbjct: 185 ALGELEDHYVTVEVEEQTPQF--FDMLQGSGMEQMGMNMQEMLGNMM-PKKRKKRKLTVR 241 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L +E+ +LIDMD V ++++ E GIVF+DE DKI + + VSREGVQR Sbjct: 242 EARRVLTEEEAQKLIDMDEVTQEAVSKAEQLGIVFIDEIDKIAGKGQQSA-DVSREGVQR 300 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V TKYG ++TDH+LFI +GAFHV++P+DL+PE+QGRFP+RV L +L D Sbjct: 301 DILPIVEGSTVVTKYGPVSTDHMLFIGAGAFHVAKPSDLIPELQGRFPIRVELSNLTVDD 360 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL + ++ L+ QY L++TEGI + FT++++ +A +A +N +IGARRL T++ Sbjct: 361 FVRILVEPDNALLKQYAALLETEGIKIVFTDEAVHKIATIATEVNQETENIGARRLHTLL 420 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ER+LED+SF A D+ + +VI EYV + D+ +IL Sbjct: 421 ERLLEDLSFEAPDVNLEEIVITPEYVTEKLAAIAKNRDLSQYIL 464 >gi|295399804|ref|ZP_06809785.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus thermoglucosidasius C56-YS93] gi|312111684|ref|YP_003990000.1| heat shock protein HslVU, ATPase HslU [Geobacillus sp. Y4.1MC1] gi|294978207|gb|EFG53804.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus thermoglucosidasius C56-YS93] gi|311216785|gb|ADP75389.1| heat shock protein HslVU, ATPase subunit HslU [Geobacillus sp. Y4.1MC1] Length = 465 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/463 (44%), Positives = 306/463 (66%), Gaps = 34/463 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV +LD++I+GQ++AK+AVAIALRNR+RR L LRDE++PKNIL++GPTGVGK Sbjct: 5 LTPRQIVEQLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRDEVVPKNILMIGPTGVGK 64 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+KVE TKFTE+GYVGR+VE ++RDLV+ ++ +V+E + +EV+++A Sbjct: 65 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMVRDLVETSVRMVKERKMNEVKDRA 124 Query: 127 SINAEERILDALV-GK-----------------TATSNTREVFRK------------KLR 156 A +R+++ LV GK T +T + + +L Sbjct: 125 EQQANKRLVELLVPGKQKQTMKNPFELLFGGVQTPQHDTNQAYEDEHIEQRRRQVAWQLA 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY 216 +G++ D+ + IEV + +F G +N+ + + ++ RKK+ + Sbjct: 185 NGQLEDEIVTIEVEEQQPMFFDFLQGAGIEQMGMNVQDALNSLIPKRRKKRKLKVRE-AR 243 Query: 217 PELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRD 274 L+ +E+ +LIDMD V +++I++ E GI+F+DE DKI AR + VSREGVQRD Sbjct: 244 KVLINEEAQKLIDMDEVTQEAIRLAEQSGIIFIDEIDKI-ARSGQVASSADVSREGVQRD 302 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L L+ DF Sbjct: 303 ILPIVEGSTVMTKYGPVKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTKLSVDDF 362 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL + + LI QY+ L+ TEGI L+F++D+I +A+VA +N T +IGARRL T+ME Sbjct: 363 VKILVEPNNALIKQYQALLATEGINLEFSDDAIRKIAEVAFEVNQTTDNIGARRLHTIME 422 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ F A D+ VVI +YV +G ++ FIL Sbjct: 423 KLLEDLLFEAPDITLDKVVITPQYVEQKLGGIVKNKNLSEFIL 465 >gi|163791336|ref|ZP_02185749.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7] gi|159873415|gb|EDP67506.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7] Length = 473 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/474 (43%), Positives = 302/474 (63%), Gaps = 48/474 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELD+YIIGQ AK++VAIALRNR RR +L D++ E+ PKN+L++G TGVG Sbjct: 6 DMTPREIVAELDKYIIGQNMAKKSVAIALRNRQRRLKLSEDMQKEITPKNLLMIGATGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA + APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + + V Q Sbjct: 66 KTEIARRLATIVQAPFVKVEATKFTEVGYIGRDVESMVRDLVESSIQIVEKQQHSNVYTQ 125 Query: 126 ASINAEERILDALVG---------------------------------------KTATSN 146 A NA ERI+ L+ A S Sbjct: 126 AERNAIERIVKILIPGIKKEKKQAASTNPFESMFKNMGVDPNQLAPQAEEEEEVTEAIST 185 Query: 147 TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206 RE ++++R+G + ++EI ++V S + P GA G+ + ++ +G+ R K Sbjct: 186 DREKMKQQIRNGLLDEREITVQV---ESQKKAMNSPMGA--GLEQMGIDLNETLGALRPK 240 Query: 207 -KIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KI+ ++V+K +++ES++L++ + +H ++ + +N GI+F+DEFDKI +++ +G Sbjct: 241 TKIKRTVTVKKAIDLFIQEESEKLVNQEDIHSMAVDLAQNSGIIFIDEFDKITSKNQNSG 300 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRFP+R Sbjct: 301 T-VSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRFPIR 359 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L L K DF ILT+ + L+ QY ++ TE + + FT +SI+ LA++A +N + Sbjct: 360 VELDDLTKEDFVKILTEPNNALLKQYIAMLGTENVKITFTYESIERLAEIAYRVNQETDN 419 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+ F A D+Q + I YV I + D+ +IL Sbjct: 420 IGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 473 >gi|119953094|ref|YP_945303.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia turicatae 91E135] gi|119861865|gb|AAX17633.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia turicatae 91E135] Length = 451 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 208/449 (46%), Positives = 310/449 (69%), Gaps = 23/449 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TG+G Sbjct: 9 NIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGIG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL++ APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE D VRE+ Sbjct: 69 KTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVREE 128 Query: 126 ASINAEERILDALVGKTATS---NT-----------REVFRKKLRDGEISDKEIDIEVAD 171 AS AEERI+D L+ + S NT R FRK+LR G+I D IDI V+ Sbjct: 129 ASKRAEERIIDKLLKTSEGSENDNTSEEERKIRDKLRNKFRKQLRSGDIDDNLIDIYVSG 188 Query: 172 TSSDISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 +S +I G++ +++S L + + RKK+ + ++K ++ +E ++L+D Sbjct: 189 KMP-VSTIEIFSGSNFEEIDMSIGGLINNIF--DRKKRRELKIKKAREIIISEELEKLVD 245 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + + + VEN GIVF+DE DKIV ++ +GN I SREGVQRD+LP+VEGS V+TKY Sbjct: 246 HENIVEVAKSRVENMGIVFIDEIDKIVTKNRTGNDI--SREGVQRDILPIVEGSKVNTKY 303 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G ++T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+ +DF+ IL T+++LI Q Sbjct: 304 GIVDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVNDFKNILKHTKNSLIKQ 363 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y + K + L F+E++ID +A++A ++N ++GARRL VME++L D+ F A + Sbjct: 364 YIAMFKVYNLTLTFSEEAIDRIAELAFDMNYEGENLGARRLHGVMEKILADLFFEAPGSK 423 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K I+ +YV I + D+ ++I+ Sbjct: 424 LKKFEINLDYVNEKI-KINEQKDLNYYII 451 >gi|223040629|ref|ZP_03610899.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus RM3267] gi|222878087|gb|EEF13198.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter rectus RM3267] Length = 440 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/446 (44%), Positives = 300/446 (67%), Gaps = 19/446 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+DAK+ +AIALRNR+RR +L ++D++MPKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLDKTMQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL ++N+V+ +R++ R+ Sbjct: 61 GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKVEQREKNRD 120 Query: 125 QASINAEERILDALVGKTATS----------NTREVFRKKLRDGEISDKEIDIEVADTSS 174 + +++I+ L+ T + E +L +G++ D I+IEV S Sbjct: 121 KIDKYVKDKIIKKLLPPLPTGASEEKKADYEKSYEKMMSRLENGDLDDLSIEIEVVQNS- 179 Query: 175 DISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 FD + + E F K++G S + K M V+ L + SD+++DM+++ Sbjct: 180 ----FDAGANVPPDMAQMQESFVKIIGLSNKTVKKEMKVKDAKEALKNEASDKILDMESI 235 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 ++++ EN GI+F+DE DK VA SGN S+EGVQRDLLP+VEGS+V+TK+G+I Sbjct: 236 KTEAVRRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSTVTTKFGAI 294 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++ ILT +++L+ QY+ Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYQILTQPKNSLLKQYEA 354 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+KTE + L F +++I A+A +A N N + DIGARRL TV+ERV+EDISF A++ +T Sbjct: 355 LLKTENVELKFNDEAIRAIAKIAQNANEKMEDIGARRLHTVIERVIEDISFEANEHGGET 414 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V ID V + D + D+ +IL Sbjct: 415 VEIDKALVEKRLSDVVKDQDLARYIL 440 >gi|167469785|ref|ZP_02334489.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis FV-1] Length = 377 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/376 (51%), Positives = 260/376 (69%), Gaps = 13/376 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD +IIGQ AKRAVAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR +++R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRHQSIEKMRYRA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ S TR+ FRKKLR+G++ DKEI+I++A Sbjct: 124 EELAEERILDVLIPPAKNNWGVPDESQEPSATRQTFRKKLREGQLDDKEIEIDLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F + G +K + ++ +++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TNQLQSMFQNIAGQKQKPR-KIKIKEALKLLIEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 QAIDAVEQHGIVFIDEIDKICKRGQTSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF VS P+DL+PE+QGR P+RV L++L DF ILT+ ++L QYK LM T Sbjct: 302 ILFIASGAFQVSSPSDLIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMAT 361 Query: 356 EGIILDFTEDSIDALA 371 EG+ ++FT + I +A Sbjct: 362 EGVTIEFTREGIRKIA 377 >gi|146081787|ref|XP_001464347.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania infantum JPCM5] gi|157866736|ref|XP_001681923.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania major strain Friedlin] gi|68125374|emb|CAJ03233.1| putative heat shock protein HslVU, ATPase,subunit HslU [Leishmania major strain Friedlin] gi|134068439|emb|CAM66729.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania infantum JPCM5] gi|322497750|emb|CBZ32826.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 423 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/433 (45%), Positives = 292/433 (67%), Gaps = 16/433 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGKT Sbjct: 3 PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE 62 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRLA+L APF+KVE TKFTE+G+ GR+VE II DL +++ +++ R + E+A + Sbjct: 63 IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL 122 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188 AE+RIL +L G + FR+ LR G + D E+ +E+ + P AS Sbjct: 123 KAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------PKTASGE 170 Query: 189 ILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246 + +S +MG R++ ++ M ++ +P ++++E D+++D + V ++++ E GI Sbjct: 171 GVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGI 230 Query: 247 VFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGAF 304 V +DE DKIV G G S EGVQ+DLLPLVEG++VSTK+ + TD ILFI SGAF Sbjct: 231 VVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAF 290 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H +P+D+L E+QGR P+RV L+ L+K DF I+T+ NLI Q+K +M TEG+ L F + Sbjct: 291 HSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFED 350 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D++ +A +A +NSTV +IGARRL T+ E+V+E+ISF + + + VIDA YV+ + Sbjct: 351 DALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVD 410 Query: 425 DFPSETDMYHFIL 437 + D+ FIL Sbjct: 411 KMVKKVDIKKFIL 423 >gi|289434563|ref|YP_003464435.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170807|emb|CBH27349.1| heat shock protein HslVU, ATPase subunit HslU/ClpY [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 469 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151 R +A NAE+R++ L +T T N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRNQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++ Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID + + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A ++ ++V + YV + D+ FIL Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469 >gi|313633459|gb|EFS00284.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri FSL N1-067] Length = 469 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/466 (42%), Positives = 305/466 (65%), Gaps = 33/466 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151 R +A NAE+R++ L +T T N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK +++ Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKVT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID + + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A ++ ++V + YV + D+ FIL Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYVNEKLAPIMQNRDLTQFIL 469 >gi|154334422|ref|XP_001563458.1| heat shock protein HslVU, ATPase subunit HslU [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060479|emb|CAM42026.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania braziliensis MHOM/BR/75/M2904] Length = 456 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/439 (44%), Positives = 294/439 (66%), Gaps = 16/439 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L + PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPT Sbjct: 30 LIRDMRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPT 89 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L APF+KVE TKFTE+G+ GR+VE II DL +++ +++ R + Sbjct: 90 GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQH 149 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 E+A + AE+RIL +L G + FR+ LR G + D E+ +E+ + P Sbjct: 150 EEEAKVKAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------P 197 Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 AS + +S +MG R++ ++ M ++ +P ++++E D+++D + V ++++ Sbjct: 198 KTASGEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRA 257 Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298 E GIV +DE DKIV G G S EGVQ+DLLPLVEG++VSTK+ + TD ILF Sbjct: 258 CEEDGIVVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILF 317 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 I SGAFH +P+D+L E+QGR P+RV L+ L+K DF I+T+ NLI Q+K +M TEG+ Sbjct: 318 ICSGAFHSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGV 377 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L F +D++ +A +A +NSTV +IGARRL T+ E+V+E+ISF + + + VIDA Y Sbjct: 378 DLIFEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSERFVIDAAY 437 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + + D+ FIL Sbjct: 438 VKRAVEKMIKKVDIKKFIL 456 >gi|315282104|ref|ZP_07870589.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL S4-120] gi|313614250|gb|EFR87909.1| ATP-dependent protease HslVU, ATPase subunit [Listeria marthii FSL S4-120] Length = 470 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/468 (42%), Positives = 303/468 (64%), Gaps = 33/468 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 5 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 64 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 65 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 124 Query: 121 EVREQASINAEERI------------------LDALVG-------------KTATSNTRE 149 +A NAE+R+ L+AL G N R Sbjct: 125 LXXXKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDEPAEEEVDQELKNKRS 184 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L++GE+ D+ + +EV + + + FD+ G + +N + M +KKK + Sbjct: 185 QIEWRLQNGELDDEIVTVEVKEQQNPM--FDMMRGTGMDQMNGMQDALSGMFPAKKKKRK 242 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E GI+F+DE DKI +++ G VSRE Sbjct: 243 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGIIFIDEIDKIASKEGGGNAQVSRE 302 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 303 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 362 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 363 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 422 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FI Sbjct: 423 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIF 470 >gi|322489764|emb|CBZ25024.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 423 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/433 (45%), Positives = 292/433 (67%), Gaps = 16/433 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 PRE++ ELDRYI+GQ +AK+AV++ALRNRWRR Q+P+D+R+E+ PKNIL++GPTGVGKT Sbjct: 3 PRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTE 62 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRLA+L APF+KVE TKFTE+G+ GR+VE II DL +++ +++ R + E+A + Sbjct: 63 IARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKL 122 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188 AE+RIL +L G + FR+ LR G + D E+ +E+ + P AS Sbjct: 123 KAEDRILKSLAG------VSDGFREHLRSGALDDIEVMVELQEKKEK------PKTASGE 170 Query: 189 ILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGI 246 + +S +MG R++ ++ M ++ +P ++++E D+++D + V ++++ E GI Sbjct: 171 GVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGI 230 Query: 247 VFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGAF 304 V +DE DKIV G G S EGVQ+DLLPLVEG++VSTK+ + TD ILFI SGAF Sbjct: 231 VVIDEIDKIVTAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVRTDKILFICSGAF 290 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 H +P+D+L E+QGR P+RV L+ L+K DF I+T+ NLI Q+K +M TEG+ L F + Sbjct: 291 HSVKPSDMLAELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFED 350 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 D++ +A +A +NSTV +IGARRL T+ E+V+E+ISF + + + VIDA YV+ + Sbjct: 351 DALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERRSEKFVIDAAYVKKAVD 410 Query: 425 DFPSETDMYHFIL 437 + D+ FIL Sbjct: 411 KMVKKVDIKKFIL 423 >gi|297624297|ref|YP_003705731.1| heat shock protein HslVU, ATPase subunit HslU [Truepera radiovictrix DSM 17093] gi|297165477|gb|ADI15188.1| heat shock protein HslVU, ATPase subunit HslU [Truepera radiovictrix DSM 17093] Length = 426 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/433 (49%), Positives = 300/433 (69%), Gaps = 8/433 (1%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P EIV ELD+YIIGQ AKR+VA+ALRN +RR+QL +++ E+ PKNIL++GPTGV Sbjct: 2 LNLTPLEIVEELDKYIIGQHKAKRSVAVALRNHFRRRQLAGEIQREVTPKNILMIGPTGV 61 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLA APF+KVE TKFTE GYVGR+VE ++RDLV + +V+E + + V E Sbjct: 62 GKTEIARRLARLARAPFVKVEATKFTETGYVGRDVESMVRDLVQASYVMVQEEQLERVSE 121 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 +A+ NAEE +LDAL+ T R R+ L G++ D+ I+IEV D Sbjct: 122 RAAKNAEEHLLDALL-PGGTEEGRAKMRELLEAGKLEDRSIEIEVKDERPQQMMMPG--- 177 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 LNL E+ S ++ R+ + + +V++ L +E+++LID D V R++I EN Sbjct: 178 MEEMGLNLQEMMSNLL-PKRRVRRKTTVREAREALRGEEAEKLIDHDEVSREAISRAENS 236 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GI+F+DE DK+ D+ +G VS EGVQRDLLP+VEG+ V+T+YG + TDH+LFIA+GAF Sbjct: 237 GIIFIDEIDKVTGSDNTSGPDVSGEGVQRDLLPIVEGTQVNTRYGQVKTDHVLFIAAGAF 296 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 S+P+DL+PE+QGRFP+RV L+ L+ SDF+LILT + +L QY EL+K +G L F + Sbjct: 297 TASKPSDLIPELQGRFPIRVELEELSASDFQLILTKPQYSLTKQYTELLKVDGTRLRFDD 356 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 I+A+A+ + +N+ V DIGARRL TV+E VLED+SF A++L + VVID YV + Sbjct: 357 SGIEAIAEYSARVNADVEDIGARRLHTVLETVLEDVSF-ATNLGD--VVIDRAYVEKKLE 413 Query: 425 DFPSETDMYHFIL 437 D S+ D+ ++L Sbjct: 414 DIASDEDLSRYVL 426 >gi|294102500|ref|YP_003554358.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium colombiense DSM 12261] gi|293617480|gb|ADE57634.1| heat shock protein HslVU, ATPase subunit HslU [Aminobacterium colombiense DSM 12261] Length = 468 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 216/463 (46%), Positives = 319/463 (68%), Gaps = 35/463 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR IV LDRYI+GQ+ AKRAVAIALRNR RR+ LP DL +E+ PKNIL+VGPTGVG Sbjct: 10 DLTPRMIVECLDRYIVGQEKAKRAVAIALRNRMRRRNLPRDLANEVAPKNILMVGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA L APF+KVE TKFTE+GYVGR+V+ +IRDLV+ A+ +V+ + +EV+ Sbjct: 70 KTEIARRLADLVLAPFVKVEATKFTEVGYVGRDVDSMIRDLVETAVAMVKRVKIEEVQGP 129 Query: 126 ASINAEERILDALV-----------------GKTATSNT-------REVFRKK----LRD 157 A AE R++DAL+ GK A RE R K L+ Sbjct: 130 AEERAEWRLVDALLPRPERKTSMPDFMKIFSGKEAEETPPQEEDTIRESTRNKVYALLKA 189 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGA---SVGILNLSELFSKVMGSGRKKKIRMSVQK 214 G++ ++E+++EVA+++S I GGA S+G +N++E+ S ++ KK+ RM V Sbjct: 190 GKLDEREVELEVAESAS--MGIPILGGAGMDSMG-MNINEMLSGLLPKKTKKR-RMKVSD 245 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L +E+++LIDM++V R+++ + GI+F+DE DK+VAR + +G VSREGVQRD Sbjct: 246 GKKLLQAEEAEKLIDMESVAREALDKAQEEGIIFIDEIDKVVARGTSSGPDVSREGVQRD 305 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 LLP+VEGS+V TKYG++ TDHILFIA+GAF +P+DL+PE+QGRFP+RV L+ L + + Sbjct: 306 LLPIVEGSTVQTKYGTVKTDHILFIAAGAFSSVKPSDLVPELQGRFPIRVELQPLGREEL 365 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL + E++LI QY+ L+ TE I + F+ED+I+ +A +A +N+ + +IGARRL T++E Sbjct: 366 ARILVEPENSLIKQYQALLSTERIEVRFSEDAIEEIAAMAEKMNAEMENIGARRLHTMVE 425 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LE+ISF+A + Q + V I+A++V+ + +TD+ ++L Sbjct: 426 QLLEEISFTAPERQGEVVDINAQFVKERLSPLMEDTDLRKYLL 468 >gi|296273490|ref|YP_003656121.1| heat shock protein HslVU ATPase subunit HslU [Arcobacter nitrofigilis DSM 7299] gi|296097664|gb|ADG93614.1| heat shock protein HslVU, ATPase subunit HslU [Arcobacter nitrofigilis DSM 7299] Length = 442 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/446 (44%), Positives = 306/446 (68%), Gaps = 17/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ DAK+ +A+ALRNR+RR QL ++++E+MPKNIL++G TGV Sbjct: 1 MNMTPKEIVKFLDDYVIGQNDAKKTIALALRNRYRRMQLAPEIQEEIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ PF+KVE +K+TE+G+VGR+VE +IRDLV ++++V + +++++ Sbjct: 61 GKTEIARRLAKMMSLPFVKVEASKYTEVGFVGRDVESMIRDLVFASMDLVTKEYEEKIQD 120 Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174 ++I++ LV + A+ +++E F K KL GE+ DK I+IE+ + Sbjct: 121 GIEQEVNKQIIEKLVPHLPEGASESSKESFIKTFNKMEEKLLKGELEDKVIEIELPKKAH 180 Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231 ++ + P + + ++ E + ++GS K KI+ V+ K +L+R S++LID + Sbjct: 181 VEVIDSSFP----IDMTSMQESLNNMLGSLNKDKIKKEVKIKDARKLLRSGASEKLIDQE 236 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 ++ ++I+ VEN GI+F+DE DKI + S S+EGVQRDLLP+VEGS+V TKYG + Sbjct: 237 SIKHEAIRRVENGGIIFIDEIDKIASGKSNQNQDPSKEGVQRDLLPIVEGSNVQTKYGQV 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFHVS+P+DLLPE+QGRFP+RV L +L++ ILT+T+++L+ QYK Sbjct: 297 KTDHILFIAAGAFHVSKPSDLLPELQGRFPLRVELNALDEEALYKILTNTKNSLLKQYKA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++ EG+ L+F +++I + A ++V N DIGARRL TV+E+VLEDISF A + +T Sbjct: 357 LLEVEGVTLEFDDEAIHSFAHLSVEANQKAEDIGARRLHTVIEKVLEDISFDADEKNGET 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 ++I + V + D + D +IL Sbjct: 417 IIITKKLVEEKLSDIVKDEDTARYIL 442 >gi|332297605|ref|YP_004439527.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema brennaborense DSM 12168] gi|332180708|gb|AEE16396.1| ATP-dependent hsl protease ATP-binding subunit hslU [Treponema brennaborense DSM 12168] Length = 487 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/480 (41%), Positives = 308/480 (64%), Gaps = 53/480 (11%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IV++LD YIIGQQ+AK++VAIALRNR RR +LP D+R+E+ PKNIL++GPTGVG Sbjct: 13 DLTPKQIVAQLDTYIIGQQNAKKSVAIALRNRSRRLKLPEDIREEIAPKNILMIGPTGVG 72 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L APF+KVE TK+TE+GYVGR+VE ++RDL+ V N+V+ ++ ++ Q Sbjct: 73 KTEIARRLAKLCNAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEAQESLKSQ 132 Query: 126 A---------------SINAEERILDAL----------------------------VGKT 142 A S E++ + AL T Sbjct: 133 AESRVEEELLDLLLPGSRKEEKKSVQALPLSIFGTSVSESGDVSAASASDGSSSAAASDT 192 Query: 143 ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV-----GILNLSELFS 197 S+TRE FR LR+G++ D+++++ V +++ + +I G ++ G+ ++ +FS Sbjct: 193 LNSSTREKFRAMLREGKLEDRQVEVSVK-KQNNVPSMEIFAGGNMEDLEAGMRQITSMFS 251 Query: 198 KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA 257 G+ +K ++V++ L+ ++ DRLID D + ++ VE GI+F+DE DKI Sbjct: 252 ----GGKTRKKTVTVREARRILIEEQLDRLIDPDKIADEAKNRVEQMGIIFIDEIDKIAV 307 Query: 258 RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317 R G VSREGVQRD+LP+VEGS+V+TKYG ++T H+LFIA+GAF++S P+DL+PE+Q Sbjct: 308 RGEHGGQDVSREGVQRDILPIVEGSTVNTKYGVVDTTHVLFIAAGAFNLSSPSDLIPELQ 367 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GRFP+RV L SL+ DF+ ILT+ ++ L QY EL+ TE + + F E +ID ++ +A ++ Sbjct: 368 GRFPLRVELDSLHAEDFKRILTEPKNALTRQYAELLATENVTVRFDESAIDRMSFLAADV 427 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 NS +IGARRL T+ME +LED+SF A + + + I ++YV + + D+ +IL Sbjct: 428 NSRAENIGARRLHTIMETLLEDLSFEADEHAGEVITITSDYVDERLKNIVENQDLSKYIL 487 >gi|298710304|emb|CBJ31925.1| conserved unknown protein [Ectocarpus siliculosus] Length = 517 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/441 (44%), Positives = 294/441 (66%), Gaps = 14/441 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+++V +L+ +I+GQ DAKRAVAIALRNRWRR +L DLR +++PKNIL++GPTG GK Sbjct: 81 MKPQQMVDQLEEHIVGQSDAKRAVAIALRNRWRRAKLDEDLRGDVIPKNILMIGPTGCGK 140 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+++ APFIKVE TKFTE+G+ G++V++II+DLV+V I + ++ + E RE Sbjct: 141 TEIARRVAKMSQAPFIKVEATKFTEVGFHGQDVDRIIKDLVEVGITMTKKKQMAEHREAV 200 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS---------SDIS 177 + I+D LVG+ + +++RE F L+ G + + I + + + SD S Sbjct: 201 KTTTDSIIIDCLVGEKSGASSRESFEDLLKKGALEEYNIKVPLNRNNTPDMPGVIFSDNS 260 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 ++P + + L + G RK++ M ++ P + E ++ +DM V RD+ Sbjct: 261 RANMPKVEDI----MQVLKASTGGKNRKQEQEMKIKDARPLIEDMEIEKRLDMAQVTRDA 316 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 ++ VE GIVF+DE DKI S EGVQRDLLP++EGSSVST++G+I+T IL Sbjct: 317 VKAVEETGIVFIDEIDKICNAGERRSADASAEGVQRDLLPMIEGSSVSTRHGNIDTSFIL 376 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FIASGAFH +P+D+L E+QGR P+RV LK L++ D ILT+ ++NLI Q E+MKTEG Sbjct: 377 FIASGAFHSCKPSDMLAELQGRLPIRVQLKGLSEDDLYKILTEPKNNLIRQQVEIMKTEG 436 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDA 416 + L FT+++I +A V +N TV +IGARRL TV+ER++E ISF AS+++E TVV +D Sbjct: 437 VDLQFTDEAIREIARVGAYVNKTVENIGARRLHTVLERIVETISFDASEMEEGTVVSVDI 496 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 + V+ + D +D+ FI+ Sbjct: 497 DLVKERVSDMLEGSDLSKFII 517 >gi|319401456|gb|EFV89666.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus epidermidis FRI909] Length = 467 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKSLVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A ++++ LV K A N R Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L G++ ++++ I+V AS+G+L + ++ +++M K Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T ++ ++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +L+ QY+ L++TE + ++F+ED+I LA++A +N + Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|314936585|ref|ZP_07843932.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus hominis subsp. hominis C80] gi|313655204|gb|EFS18949.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus hominis subsp. hominis C80] Length = 466 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/471 (41%), Positives = 309/471 (65%), Gaps = 52/471 (11%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT------------------------------REVFR 152 + A E+++ LV K A +N R R Sbjct: 128 TQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEIR 187 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE------LFSKVMGSGRKK 206 ++L G++ ++++ I+V PG ++G+L S+ + +++M RK Sbjct: 188 QQLLAGKLEEEKVRIKVEQD---------PG--ALGMLGTSQNQQMQDMMNQLMPK-RKV 235 Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266 + + V+ L D +D LID +T +++++++ E GI+F+DE DK+ +S +G V Sbjct: 236 EREVPVKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDV 295 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 296 SRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVEL 355 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +SL +DF ILT+ + +LI QY+ L+KTE + ++F++++I LA++A +N +IGA Sbjct: 356 ESLTVNDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGA 415 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 416 RRLHTILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466 >gi|228475019|ref|ZP_04059747.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus hominis SK119] gi|228271004|gb|EEK12392.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus hominis SK119] Length = 466 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/471 (41%), Positives = 309/471 (65%), Gaps = 52/471 (11%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+LD YI+GQ+DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKKSLVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT------------------------------REVFR 152 + A E+++ LV K A +N R R Sbjct: 128 TQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIKTKRSEIR 187 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSE------LFSKVMGSGRKK 206 ++L G++ ++++ I+V PG ++G+L S+ + +++M RK Sbjct: 188 QQLIAGKLEEEKVRIKVEQD---------PG--ALGMLGTSQNQQMQDMMNQLM-PKRKV 235 Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGV 266 + + V+ L D +D LID +T +++++++ E GI+F+DE DK+ +S +G V Sbjct: 236 EREVPVKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDV 295 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 SR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L Sbjct: 296 SRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVEL 355 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +SL +DF ILT+ + +LI QY+ L+KTE + ++F++++I LA++A +N +IGA Sbjct: 356 ESLTVNDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGA 415 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RRL T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 416 RRLHTILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 466 >gi|268679660|ref|YP_003304091.1| heat shock protein HslVU, ATPase HslU [Sulfurospirillum deleyianum DSM 6946] gi|268617691|gb|ACZ12056.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurospirillum deleyianum DSM 6946] Length = 441 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/445 (43%), Positives = 303/445 (68%), Gaps = 16/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P++IV+ LD YIIGQ AK+A+AIALRNR+RR +L ++ +E+MPKNIL++G TGV Sbjct: 1 MNLTPKQIVAYLDEYIIGQFHAKKAIAIALRNRYRRLKLEGEMVEEVMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDL+ +IN+V+ +++ + Sbjct: 61 GKTEIARRMAKMLSLPFVKVEASKYTEVGFVGRDVESMVRDLMMASINLVKAEHKEKNQA 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 +++ E I++ L+ K + E R+KLRDGE++ +I+IE++ SS Sbjct: 121 NIALHVERSIIEKLLPPLPKGVSEEKKADYEKSFERMRQKLRDGELNALKIEIEISQNSS 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 D+ + +P ++ + E F K++GSG+ K M+V++ L + S++L+DM+ V Sbjct: 181 DLGDSSLPPE----MIKVQESFIKILGSGQSSVKKEMTVKEAQEVLKTEASEKLLDMEAV 236 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 ++ + EN GI+F+DE DKI S + S+EGVQRDLLP+VEGS+V+TKYGS+ Sbjct: 237 KSEAKERAENGGIIFIDEIDKIAVNSSQSHRSDPSKEGVQRDLLPIVEGSNVTTKYGSLK 296 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFI++GAFH+S+P+DL+PE+QGRFP+RV L SL + ILT +++L+ QY+ L Sbjct: 297 TDHILFISAGAFHLSKPSDLIPELQGRFPLRVELSSLTEEVLYQILTQPKNSLLRQYQAL 356 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 ++TEG+ L F +++I ++A +A N DIGARRL T++E+VLEDISF+A + + +T+ Sbjct: 357 LQTEGVELLFEDEAIRSIAKIAQITNEKTEDIGARRLHTIIEKVLEDISFTADEHKGETL 416 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 + E V + D +IL Sbjct: 417 HVTKELVHEKLDAIVESEDSSRYIL 441 >gi|213853085|ref|ZP_03382617.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 379 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/378 (50%), Positives = 264/378 (69%), Gaps = 13/378 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G + TDH Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDH 301 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM T Sbjct: 302 ILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMAT 361 Query: 356 EGIILDFTEDSIDALADV 373 EG+ ++FT+ I +A+ Sbjct: 362 EGVNIEFTDSGIKRIAEA 379 >gi|70726661|ref|YP_253575.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus haemolyticus JCSC1435] gi|123762301|sp|Q4L5V6|HSLU_STAHJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|68447385|dbj|BAE04969.1| heat shock protein HslU [Staphylococcus haemolyticus JCSC1435] Length = 467 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/472 (41%), Positives = 308/472 (65%), Gaps = 53/472 (11%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+LD YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLDEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKGLVKDEA 127 Query: 127 SINAEERILDALV---GKTATSNT--------------------------------REVF 151 A E+++ LV K A++N+ R Sbjct: 128 VNKANEKLVKLLVPSMKKKASNNSNPLESLLGGAIPNFGNNDDEEEETPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L DG++ ++++ I+V PG ++G+L + ++ +++M RK Sbjct: 188 KKQLLDGKLEEEKVRIKVEQD---------PG--ALGMLGTNQNQQMQDMMNQLM-PKRK 235 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 + + V+ L D +D LID +T +++++++ E GI+F+DE DK+ ++ +G Sbjct: 236 VEREVPVKTARKILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNANSGQD 295 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV Sbjct: 296 VSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVE 355 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N +IG Sbjct: 356 LESLTVDDFYRILTEPKLSLIKQYEALLQTEEVTVNFTKEAITRLAEMAYQVNQDTDNIG 415 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 416 ARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|329736606|gb|EGG72872.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis VCU045] Length = 467 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A ++++ LV K A N R Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L G++ ++++ I+V AS+G+L + ++ +++M K Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T ++ ++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +L+ QY+ L++TE + ++F+ED+I LA++A +N + Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|293366782|ref|ZP_06613458.1| heat shock protein HslVU [Staphylococcus epidermidis M23864:W2(grey)] gi|291319083|gb|EFE59453.1| heat shock protein HslVU [Staphylococcus epidermidis M23864:W2(grey)] Length = 470 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V+++A Sbjct: 71 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDGKKSLVKDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A ++++ LV K A N R Sbjct: 131 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L G++ ++++ I+V AS+G+L + ++ +++M K Sbjct: 191 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T ++ ++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +L+ QY+ L++TE + ++F+ED+I LA++A +N + Sbjct: 357 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|27467848|ref|NP_764485.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis ATCC 12228] gi|57866720|ref|YP_188402.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus epidermidis RP62A] gi|242242536|ref|ZP_04796981.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis W23144] gi|251810685|ref|ZP_04825158.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876314|ref|ZP_06285181.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis SK135] gi|32129624|sp|Q8CPH0|HSLU_STAES RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286705|sp|Q5HPT8|HSLU_STAEQ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|27315393|gb|AAO04527.1|AE016747_24 heat shock protein HslU [Staphylococcus epidermidis ATCC 12228] gi|57637378|gb|AAW54166.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus epidermidis RP62A] gi|242233963|gb|EES36275.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis W23144] gi|251805845|gb|EES58502.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295339|gb|EFA87866.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis SK135] gi|329724338|gb|EGG60850.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis VCU144] gi|329736195|gb|EGG72467.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis VCU028] Length = 467 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/474 (41%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKKSLVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A ++++ LV K A N R Sbjct: 128 TKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L G++ ++++ I+V AS+G+L + ++ +++M K Sbjct: 188 KKQLEQGKLENEKVRIKVEQDP-----------ASMGMLGTNQNQQIQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T ++ ++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +L+ QY+ L++TE + ++F+ED+I LA++A +N + Sbjct: 354 VELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|269836345|ref|YP_003318573.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter thermophilus DSM 20745] gi|269785608|gb|ACZ37751.1| heat shock protein HslVU, ATPase subunit HslU [Sphaerobacter thermophilus DSM 20745] Length = 485 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/466 (46%), Positives = 304/466 (65%), Gaps = 37/466 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV L+RYI+GQ AKRAVAIALRNRWRRQ LP LR E+MPKNIL++GPTGVGK Sbjct: 22 MTPRQIVEALNRYIVGQDQAKRAVAIALRNRWRRQHLPEGLRQEVMPKNILMIGPTGVGK 81 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A +A APF+KVE TKFTE+GYVGR+VE I+RDLV+V+I ++ R + VRE+A Sbjct: 82 TEIARRVATIADAPFLKVEATKFTEVGYVGRDVETIVRDLVEVSIGMLHGQRLEAVREEA 141 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGE-ISDKE--------------------- 164 S A +R+ D L+ + A +N R ++ R+ E I D E Sbjct: 142 SSAAIQRLADLLIEQRA-ANRRGRRKETPREAEAIQDPEQRRRHEANVRRRLARQRARML 200 Query: 165 -------IDIEVADTSSDISNFD--IPGGASVGIL--NLSELFSKVMG--SGRKKKIRMS 211 ++ E + +D FD IP + G+ L E FS+++ + R++ ++S Sbjct: 201 DLLQKEALEDETVELETD-QEFDAIIPLEFAAGMSPEELHETFSELLEGFAPRRRSRKVS 259 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L + E++RL+D D+V ++++ E +GI+F+DE DK++ + G VS EGV Sbjct: 260 VREARQILTQQEANRLVDFDSVVEEAVRRAEEHGIIFIDEIDKLINPNGDYGPDVSGEGV 319 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRDLLP+VEGS V+T+YG I TDHILFIA+G+F RP+DL+PE+QGRFP+RV L L++ Sbjct: 320 QRDLLPIVEGSVVNTRYGPIKTDHILFIAAGSFQTVRPSDLIPELQGRFPIRVELDHLSE 379 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 D ILT ++ L QY+ L+ E + L FTED + +A +A +N+ DIGARRL T Sbjct: 380 DDLFAILTQPDNALTRQYQALLAAEDVELVFTEDGLREIARIAAEVNARTEDIGARRLHT 439 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ERVLEDISF A D + + VVID +YV + D ++ D+ FIL Sbjct: 440 IVERVLEDISFEAPDRRGERVVIDRDYVLQRVEDIAADDDLSKFIL 485 >gi|203284216|ref|YP_002221956.1| heat shock protein [Borrelia duttonii Ly] gi|203287755|ref|YP_002222770.1| heat shock protein [Borrelia recurrentis A1] gi|201083659|gb|ACH93250.1| heat shock protein [Borrelia duttonii Ly] gi|201084975|gb|ACH94549.1| heat shock protein [Borrelia recurrentis A1] Length = 451 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/445 (45%), Positives = 304/445 (68%), Gaps = 21/445 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 PREIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TGVGKT Sbjct: 12 PREIVAELDKYIIGQSEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGVGKTE 71 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++ APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE D V+E+AS Sbjct: 72 IARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVKEEASK 131 Query: 129 NAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEVADTSS 174 AE+RI+D L+ + S R+ FRK+LR GE+ + ID+ V+ Sbjct: 132 RAEDRIIDKLLKNSENSENDNITDEEKRVRDKLRDKFRKQLRKGELDENLIDVYVSGKMP 191 Query: 175 DISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 +S +I G ++ +++S L + + RKK+ + ++K ++ +E ++L+D + Sbjct: 192 -VSTIEIFSGGNLEEIDMSIGGLINNIF--DRKKRRELKIKKAREIIISEELEKLVDYEN 248 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + + VEN GIVF+DE DKIV ++ G VSREGVQRD+LP+VEGS V+T+YG ++ Sbjct: 249 IVDIAKSRVENMGIVFIDEIDKIVTKNR-TGNDVSREGVQRDILPIVEGSKVNTRYGIVD 307 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T HILFIA+GAF++S+P+DL+PE+QGRFP++V L SL+ DF+ IL T+++LI QY + Sbjct: 308 TSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELTSLSIDDFKNILKCTKNSLIKQYIAM 367 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 K + L FTE++ID +A++ N+N ++GARRL VME++L D+ F A + K + Sbjct: 368 FKVYNLTLTFTEEAIDRIAELTFNMNFEGENLGARRLHGVMEKILADLFFEAPGSKLKKI 427 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 428 EINLDYVDEKI-KINEQKDLNYYII 451 >gi|157737218|ref|YP_001489901.1| ATP-dependent protease ATP-binding subunit HslU [Arcobacter butzleri RM4018] gi|157699072|gb|ABV67232.1| heat shock protein HslVU, ATP-dependent protease subunit HslU [Arcobacter butzleri RM4018] Length = 442 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/446 (45%), Positives = 303/446 (67%), Gaps = 17/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++ L++E+MPKNIL++G TGV Sbjct: 1 MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV IN+V +++++ Sbjct: 61 GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120 Query: 125 QASINAEERILDALVG---KTATSNTREVF-------RKKLRDGEISDKEIDIEVADTSS 174 + ++I++ LV ++A+ + +E F KKL +G + DK+I+IE+ + Sbjct: 121 KIDDEVNKKIIEKLVPPLPESASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180 Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231 +I + +P S ++ E +K++GS K KI+ V K L+R S+ L+D + Sbjct: 181 VEIIDSSLPFDMS----SMQESLNKMLGSLNKDKIKKEVTIKDAKILLRSVASESLLDQE 236 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + ++++ EN GI+FLDE DKI + NG S+EGVQRDLLP+VEGSSV TK+G I Sbjct: 237 AIKIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQI 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++ ILT+T+++L+ QYK Sbjct: 297 KTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++ EG+ L+F +++I A A +V N DIGARRL TV+E+V+EDISF A + + Sbjct: 357 LLEVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTK 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 VV+ E V + D D +IL Sbjct: 417 VVVTKELVSDKLDDIVDNVDTARYIL 442 >gi|328957571|ref|YP_004374957.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp. 17-4] gi|328673895|gb|AEB29941.1| ATP-dependent protease ATPase subunit HslU [Carnobacterium sp. 17-4] Length = 474 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/475 (42%), Positives = 300/475 (63%), Gaps = 49/475 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELD+YIIGQ AK++VA+ALRNR RR +L ++ E+ PKN+L++G TGVG Sbjct: 6 DMTPREIVAELDKYIIGQTMAKKSVAVALRNRQRRLKLDEAMQKEITPKNLLMIGATGVG 65 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA + APF+KVE TKFTE+GY+GR+VE ++RDLV+ +I IV + + +V + Sbjct: 66 KTEIARRLATIVRAPFVKVEATKFTEVGYIGRDVESMVRDLVEASIQIVEKQQYSQVYSR 125 Query: 126 ASINAEERILDALVG----------------------------------------KTATS 145 A NA ERI+ L+ A S Sbjct: 126 AEKNAIERIVKILIPGIKKEKRQSTSSNPLESMFKNMGVDPNQLAPQAEEEEEEVTEAIS 185 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 RE ++++R+G + ++E+ I+V S + + P GA G+ + ++ +G+ R Sbjct: 186 TDRETMKQQIRNGLLDERELTIQV---ESQKKSMNSPMGA--GLEQMGIDLNETLGALRP 240 Query: 206 K---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 K K ++V+K +++ES +L++ + + ++ + +N GI+F+DEFDKI +++ + Sbjct: 241 KSKVKRTVTVKKAIELFIQEESAKLVNQEDIQSMAVDLAQNAGIIFIDEFDKITSKNENS 300 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 G VSREGVQRD+LP+VEGS VSTKYG I TDHILFIASGAFHVS+P+DL+PE+QGRFP+ Sbjct: 301 GT-VSREGVQRDILPIVEGSQVSTKYGPIQTDHILFIASGAFHVSKPSDLIPELQGRFPI 359 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV L L K DF ILT+ ++ L+ QY ++ TE + + FT +SI+ LAD+A +N Sbjct: 360 RVELDDLTKEDFVKILTEPDNALLKQYIAMLGTENVNITFTYESIERLADIAYQVNHETD 419 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E++LED+ F A D+Q + I YV I + D+ +IL Sbjct: 420 NIGARRLHTILEKLLEDLLFEAPDMQMGDITITENYVNEKIEHIVEDKDLSRYIL 474 >gi|72389062|ref|XP_844826.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma brucei TREU927] gi|62176325|gb|AAX70437.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma brucei] gi|70801360|gb|AAZ11267.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328093|emb|CBH11070.1| heat shock protein HslVU, ATPase subunit HslU,putative [Trypanosoma brucei gambiense DAL972] Length = 475 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/441 (46%), Positives = 288/441 (65%), Gaps = 19/441 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L N PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPT Sbjct: 48 LVRNMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPT 107 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES--RRD 120 GVGKT I+RRLA+L APFIKVE TKFTE+G+ GR+VE II DL ++ +++ RR Sbjct: 108 GVGKTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNIMRRH 167 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 E E A AE RIL AL G + FR+ LR G + D E+ +E+ + N Sbjct: 168 E--ETARQKAENRILKALAG------VSDGFREHLRSGALDDIEVIVELQEKKEKPKN-- 217 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSI 238 G + G+ E+ S + G R + ++ M ++ P ++++E D+++D + V +++ Sbjct: 218 --SGTNEGVFISLEIPSSI-GGQRPQTVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEAL 274 Query: 239 QMVENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHI 296 + E GIV +DE DKIV G G S EGVQ+DLLPLVEG++VSTK I TD I Sbjct: 275 RACEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKGNVQIKTDKI 334 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAFH +P+D+L E+QGR P+RV LK L K DF I+T+ NLI Q+ +MKTE Sbjct: 335 LFICSGAFHSVKPSDMLAELQGRLPIRVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTE 394 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 G+ L FT+D++ +A +A ++NSTV +IGARRL T+ E+V+E++SF D + +T VIDA Sbjct: 395 GVDLVFTDDALWEIASIAAHINSTVQNIGARRLITITEKVVEEVSFDGPDRKGETFVIDA 454 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YVR + + D+ FIL Sbjct: 455 AYVRNSVESMMKKVDIKKFIL 475 >gi|187918169|ref|YP_001883732.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia hermsii DAH] gi|119861017|gb|AAX16812.1| ATP-dependent hsl protease ATP-binding subunit HslU [Borrelia hermsii DAH] Length = 451 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 311/449 (69%), Gaps = 23/449 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N P+EIV+ELD+YIIGQ +AK+ V+IAL NR+ R +LP ++RD++MPKNI++VG TGVG Sbjct: 9 NIVPKEIVAELDKYIIGQVEAKKLVSIALVNRYIRSKLPKEIRDDVMPKNIIMVGSTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRL++ APFIKVE TK+TE+GYVGR+VE +IRDL+ +A+N+VRE D VRE+ Sbjct: 69 KTEIARRLSKFIKAPFIKVEATKYTEVGYVGRDVESMIRDLMSIAVNMVREEMYDSVREE 128 Query: 126 ASINAEERILDALVGKTATSNT--------------REVFRKKLRDGEISDKEIDIEVAD 171 AS AEERI+D L+ + S R+ FRK+LR+G+I D ID+ V+ Sbjct: 129 ASKRAEERIIDKLLKASENSENNNASDEENKVREKLRDKFRKQLRNGDIDDSLIDVYVSG 188 Query: 172 TSSDISNFDIPGGASVGILNLS--ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 +S +I G++ +++S L + + RKK+ + ++K ++ +E ++L+D Sbjct: 189 KMP-VSTIEIFSGSNFEEIDMSIGGLINNIF--DRKKRKELKIKKAREIIISEELEKLVD 245 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 + + + VEN GIVF+DE DKIV ++ +GN VSREGVQRD+LP+VEGS V+T+Y Sbjct: 246 HENIVEIAKLRVENMGIVFIDEIDKIVTKNRTGN--DVSREGVQRDILPIVEGSKVNTRY 303 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I+T HILFIA+GAF++S+P+DL+PE+QGRFP++V LKSL+ DF+ IL T+++LI Q Sbjct: 304 GIIDTSHILFIAAGAFNLSKPSDLIPELQGRFPIKVELKSLSVGDFKNILKHTKNSLIKQ 363 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y E+ K + L F+E++ID +A++A N+N ++GARRL VME++L D+ F A + Sbjct: 364 YIEMFKVYNLTLTFSEEAIDRIAELAFNMNFEGENLGARRLHGVMEKILADLFFEAPGSK 423 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K + I+ +YV + + D+ ++I+ Sbjct: 424 LKKIEINLDYVNEKV-KINEQKDLNYYII 451 >gi|223044232|ref|ZP_03614269.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus capitis SK14] gi|222442382|gb|EEE48490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus capitis SK14] Length = 467 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 A ++++ LV K + N R Sbjct: 128 IAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L +G++ +++ I+V A++G+L + ++ +++M K Sbjct: 188 KKQLEEGKLEQEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +LI QY+ L++TE + ++FTE+++ LA++A +N + Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467 >gi|313638154|gb|EFS03411.1| ATP-dependent protease HslVU, ATPase subunit [Listeria seeligeri FSL S4-171] Length = 456 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 298/448 (66%), Gaps = 33/448 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++GPT Sbjct: 6 LMSQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDEAIRDEIIPKNILMIGPT 65 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + V Sbjct: 66 GVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQLV 125 Query: 123 REQASINAEERILDALV-----GKTATS--------------------------NTREVF 151 R +A NAE+R++ L +T T N R Sbjct: 126 RVKAEKNAEKRLIKLLAPSQKKKQTTTQNPIEALFGGMNQQEEPAEEEVDQELKNKRSQI 185 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +L++GE+ D+ + +EV + + + D+ GA + +N + M +KKK + + Sbjct: 186 EWRLQNGELDDEIVTVEVKEQQNPM--LDMMRGAGMDQMNGMQDALSGMFPAKKKKRKXT 243 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L DE+ +LID + + + I E G++F+DE DKI +++ G VSREGV Sbjct: 244 VREAKKILFEDEASKLIDAEELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGV 303 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + Sbjct: 304 QRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQ 363 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T Sbjct: 364 EDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHT 423 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYV 419 ++E++LED+ F A ++ ++V + YV Sbjct: 424 ILEKLLEDLLFEAPEINMESVKVTENYV 451 >gi|315640718|ref|ZP_07895820.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus italicus DSM 15952] gi|315483473|gb|EFU73967.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus italicus DSM 15952] Length = 466 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/467 (43%), Positives = 302/467 (64%), Gaps = 43/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV ELD+YIIGQ+ AK++VA+ALRNR+RR QL ++ E+ PKNIL++GPTGVGKT Sbjct: 6 TPKEIVQELDQYIIGQEKAKKSVAVALRNRYRRLQLDEKMQHEVTPKNILMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APFIKVE TKFTE+GYVGR+VE ++RDLV+ AI IVR+ + V +QA Sbjct: 66 EIARRLAKVVSAPFIKVEATKFTEVGYVGRDVESMVRDLVENAIQIVRKEQYSSVYQQAV 125 Query: 128 INAEERILDALV------GKTAT-----------------------------SNTREVFR 152 A R++ ALV K +T SN + +F Sbjct: 126 KKANRRLVKALVPGIKKEQKQSTNPYEQMMSILNTANQPVEEPKEELTDEIRSNRQAIF- 184 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210 ++L G + ++E+ I++ + + + + G +GI +L+E + KKKI + Sbjct: 185 EQLERGVLDNREVTIKIDEPKAQAAPMN-NGLEQMGI-DLNETLGALKP---KKKIERTV 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +V++ L+++ES +L++ +H ++++ E GI+F+DE DKI ++ N VSREG Sbjct: 240 TVKEARELLVQEESSKLVNDADIHSAALKLAEASGIIFIDEIDKITSKSQSNSGEVSREG 299 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS V+TKYG++ TDHILF+ASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 300 VQRDILPIVEGSQVNTKYGTLQTDHILFVASGAFHLSKPSDLIPELQGRFPIRVELDDLT 359 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A +N +IGARRL Sbjct: 360 AEDFVKILTEPNNALIKQYIALLGTEHVSVIFTQEAIERIAQIAFQVNQETDNIGARRLH 419 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A+D+Q + I YV + D + D+ +IL Sbjct: 420 TILEKLLEDLLFEAADMQMAEITITEAYVNEKLNDIAQDEDLSRYIL 466 >gi|314933433|ref|ZP_07840798.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae C87] gi|313653583|gb|EFS17340.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus caprae C87] Length = 467 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 A ++++ LV K + N R Sbjct: 128 IAKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L +G++ +++ I+V A++G+L + ++ +++M K Sbjct: 188 KKQLEEGKLEKEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +LI QY+ L++TE + ++FTE+++ LA++A +N + Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFTEEAVKRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467 >gi|73662823|ref|YP_301604.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642438|sp|Q49X39|HSLU_STAS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|72495338|dbj|BAE18659.1| ATP-dependent protease ATPase subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 470 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/477 (41%), Positives = 308/477 (64%), Gaps = 60/477 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPRDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLTEEEKQEVAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+ARL GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V+++A Sbjct: 68 TEIARRMARLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKALVQDEA 127 Query: 127 SINAEERI---------------------LDALVG--------------KTAT---SNTR 148 A E++ L++L G +T T R Sbjct: 128 QDKANEKLVKLLVPSMKKKANNNTNSNNPLESLFGGSIPNFGQNNDDEEETPTDEVKTKR 187 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGS 202 +++L +G++ D+++ ++V A++G+L + ++ +++M Sbjct: 188 SEIKQQLLNGQLEDEKVRLKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP- 235 Query: 203 GRKKKIRMSVQ-KCYPELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260 KKK+ V K +++ DE +D LID +T ++++I++ E GI+F+DE DK+ + Sbjct: 236 --KKKVEREVPVKTARKILTDEFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQ 293 Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320 +G VSR+GVQRD+LP++EGS V TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRF Sbjct: 294 NSGQDVSRQGVQRDILPILEGSMVQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRF 353 Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 P+RV L+SL+ DF ILT+ + +LI QY+ L++TE + + FT+++I LA++A +N Sbjct: 354 PIRVELESLSVEDFVRILTEPKLSLIKQYEALLQTEQVTVKFTDEAIKRLAEIAFQVNQD 413 Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 TDNIGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|315636932|ref|ZP_07892156.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter butzleri JV22] gi|315478762|gb|EFU69471.1| ATP-dependent hsl protease ATP-binding subunit HslU [Arcobacter butzleri JV22] Length = 442 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/446 (45%), Positives = 302/446 (67%), Gaps = 17/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P++IV+ LD YIIGQ+DAK+ +A+ALRNR+RR ++ L++E+MPKNIL++G TGV Sbjct: 1 MDMTPKQIVAYLDDYIIGQKDAKKTIALALRNRYRRMRVEPKLQEEIMPKNILMIGNTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE +IRDLV IN+V +++++ Sbjct: 61 GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMIRDLVYEGINLVTREFEEKIKD 120 Query: 125 QASINAEERILDALVGK---TATSNTREVF-------RKKLRDGEISDKEIDIEVADTSS 174 + ++I++ LV +A+ + +E F KKL +G + DK+I+IE+ + Sbjct: 121 KIDDEVNKKIIEKLVPPLPDSASDSAKEAFIKTYNTMEKKLLEGILDDKKIEIELPKKAH 180 Query: 175 -DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRD-ESDRLIDMD 231 +I + +P S ++ E +K++GS K KI+ V K L+R S+ L+D + Sbjct: 181 VEIIDSSLPFDMS----SMQESLNKMLGSLNKDKIKKEVTIKDAKILLRSVASESLLDQE 236 Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + ++++ EN GI+FLDE DKI + NG S+EGVQRDLLP+VEGSSV TK+G I Sbjct: 237 AIKIEALKRCENGGIIFLDEIDKIASGKKNNGQDPSKEGVQRDLLPIVEGSSVQTKFGQI 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++ ILT+T+++L+ QYK Sbjct: 297 KTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELESLDEEALYKILTNTKNSLLRQYKA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++ EG+ L+F +++I A A +V N DIGARRL TV+E+V+EDISF A + + Sbjct: 357 LLEVEGVELEFDDEAIRAFAKYSVTANEKTEDIGARRLHTVIEKVIEDISFEADEKKGTK 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 VV+ E V + D D +IL Sbjct: 417 VVVTKELVSDKLDDIVDNVDTARYIL 442 >gi|315178885|gb|ADT85799.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC 11218] Length = 406 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/412 (48%), Positives = 276/412 (66%), Gaps = 18/412 (4%) Query: 37 RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 RW LR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG Sbjct: 2 RWEES-----LRVEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 56 Query: 97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT-----------ATS 145 + VE IIRDL DVA+ + + ++V+ +A AEERILDAL+ S Sbjct: 57 KEVETIIRDLTDVAVKMTHQQAMEKVKFRAEEQAEERILDALLPPARDAWGEAEHNDTAS 116 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 +TR+ FRKKLR+G++ DKEI++ VA + PG + L LF +G K Sbjct: 117 STRQTFRKKLREGKLDDKEIEVNVAVAQMGVEIMAPPGMEEM-TNQLQGLFQN-LGGDTK 174 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 KK ++ ++ + L +E+ +L++ + + +I VEN GIVF+DE DKI R +G Sbjct: 175 KKRKLKIKDAFKALTEEEAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGESSGPD 234 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSREGVQRDLLPL+EGS+V+TK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV Sbjct: 235 VSREGVQRDLLPLIEGSTVTTKHGMVRTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 294 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L++L+ DF+ ILT+ +++L QY LMKTE + + FTED I +AD A +N T +IG Sbjct: 295 LEALSSDDFKRILTEPKASLTEQYMALMKTEEVDIAFTEDGIKQIADAAWQVNETTENIG 354 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL TVMER++++ISF A++ ++ ID+ YVR +G+ + D+ FIL Sbjct: 355 ARRLHTVMERLMDEISFDATEKAGASLTIDSAYVRAKLGELVEDEDLSRFIL 406 >gi|289550955|ref|YP_003471859.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus lugdunensis HKU09-01] gi|289180487|gb|ADC87732.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus lugdunensis HKU09-01] Length = 467 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/469 (41%), Positives = 298/469 (63%), Gaps = 47/469 (10%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+ ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 A ++++ LV K A N R Sbjct: 128 VAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR- 209 R++L G++ D+++ I+V PG + N ++ +M KKK+ Sbjct: 188 RQQLLAGKLEDEKVRIKVEQD---------PGALGMLGTNQNQQMQDMMNQLMPKKKVER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 + V+ L D +D LID +T ++++I++ E GI+F+DE DK+ + +G VSR Sbjct: 239 EVPVKTARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 +GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+S Sbjct: 299 QGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELES 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L +DF ILT+ + +L+ QY+ L+KTE + ++FT+ +I LA++A +N +IGARR Sbjct: 359 LTVNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 419 LHTILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467 >gi|315658457|ref|ZP_07911329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus lugdunensis M23590] gi|315496786|gb|EFU85109.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus lugdunensis M23590] Length = 467 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/469 (41%), Positives = 298/469 (63%), Gaps = 47/469 (10%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+ ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 A ++++ LV K A N R Sbjct: 128 VAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR- 209 R++L G++ D+++ I+V PG + N ++ +M KKK+ Sbjct: 188 RQQLLAGKLEDEKVRIKVEQD---------PGALGMLGTNQNQQMQDMMNQLMPKKKVER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 + V+ L D +D LID +T ++++I++ E GI+F+DE DK+ + +G VSR Sbjct: 239 EVPVKAARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 +GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+S Sbjct: 299 QGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELES 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L +DF ILT+ + +L+ QY+ L+KTE + ++FT+ +I LA++A +N +IGARR Sbjct: 359 LTVNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 419 LHTILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL 467 >gi|295111498|emb|CBL28248.1| heat shock protein HslVU, ATPase subunit HslU [Synergistetes bacterium SGP1] Length = 468 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/467 (45%), Positives = 301/467 (64%), Gaps = 34/467 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L +P I+ L+RYI+GQ AKRAVAIALRNR RR+ LP ++ E+MPKNIL+VGPT Sbjct: 4 LNSALTPSRIIEYLNRYIVGQDKAKRAVAIALRNRLRRRALPPEMAHEIMPKNILMVGPT 63 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA L+ APFIKVE TKFTE+GYVGR+VE IIRDL++ + +VR + + Sbjct: 64 GVGKTEIARRLATLSDAPFIKVEATKFTEVGYVGRDVETIIRDLMEFGVAMVRRRMLETM 123 Query: 123 REQASINAEERILDALVGK------------------------------TATSNTREVFR 152 + A AE+R+LDA++ K A NTR R Sbjct: 124 QAPALERAEQRLLDAMLPKKERRFSVPDLMKAFGASQEEAAEEDREEEGQAEENTRTRAR 183 Query: 153 --KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 + LR G + D+E+D+EV D + I G S+G+ N+SE+ S ++ R +K M Sbjct: 184 LLEMLRAGRLDDREVDVEVTDAVTAIPVMGASGMDSMGV-NISEMLSGIL-PKRSRKRHM 241 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V++ L +E+++LID +T+ R+++++V+ GIVFLDE DK+V R G VSREG Sbjct: 242 KVKEALRILQSEEAEKLIDKETLAREALEIVQEGGIVFLDELDKVVVRGGSTGPDVSREG 301 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRDLLP+VEGS V T+YG + TDHILFIA+GAF +P+DL+PE+QGRFP+RV L+ L+ Sbjct: 302 VQRDLLPIVEGSVVQTRYGPVKTDHILFIAAGAFSGVKPSDLIPELQGRFPIRVELEPLS 361 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + + ILT+ E++LI QY L+ TEG L FTE++ +A ++ +N+ + DIGARRL Sbjct: 362 WENLQQILTEPENSLIRQYTALISTEGTELVFTEEATAEIAKLSSKMNAEMEDIGARRLH 421 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T+ME++LE+ISFS D + + I A+ VR + D+ ++L Sbjct: 422 TMMEQLLEEISFSVCDRSPERIEITADLVRERLAPLVENRDIRRYLL 468 >gi|308810919|ref|XP_003082768.1| heat shock protein HslU (ISS) [Ostreococcus tauri] gi|116061237|emb|CAL56625.1| heat shock protein HslU (ISS) [Ostreococcus tauri] Length = 944 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/424 (46%), Positives = 281/424 (66%), Gaps = 13/424 (3%) Query: 26 AKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 AKRA A+ALRNRWRR ++ + +R+E+ PKNIL++GPTG GKT I+RRLA++ +PF+KVE Sbjct: 522 AKRACAVALRNRWRRHRIESPMREEIAPKNILMIGPTGCGKTEIARRLAKITDSPFVKVE 581 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATS 145 TKFTE+G+ GR+V+QIIRDLVD I + ++ R + + E +ILD + G+ A Sbjct: 582 ATKFTEVGFHGRDVDQIIRDLVDNGIALTKQKMRAKFEKYVEELIENKILDFICGEGAND 641 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 TRE FR RDG + D+ I++++ D + D P G + I L K+ G+ + Sbjct: 642 ETREAFRSLYRDGTLDDRMIEVDLPDNAGQGMKID-PSGGPIPIHELVIKVDKLFGNRKS 700 Query: 206 K-KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DSGNG 263 K +M+V +C P + E D L+ +T+ +++I VEN GIVF+DE DKIV+ D +G Sbjct: 701 TTKRKMTVAECKPLIEEMEFDNLLSAETIAKEAITSVENDGIVFIDEIDKIVSSSDYRHG 760 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 S EGVQRDLLP++EGS VSTK+G++NTDHILF+ SGAFH ++P+D+L E+QGR P+R Sbjct: 761 ADASSEGVQRDLLPIIEGSVVSTKHGNVNTDHILFVCSGAFHSAKPSDMLAELQGRLPIR 820 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V LK L++ D ILT+ E N+I Q K LMKTEGI L FT ++I+ +A +A +N TV + Sbjct: 821 VELKGLSEHDLYRILTEPEMNMIAQQKALMKTEGIDLVFTNEAIEHIAKLAHKVNKTVEN 880 Query: 384 IGARRLQTVMERVLEDISFSASDLQEK----------TVVIDAEYVRLHIGDFPSETDMY 433 IGARRL TV+ER++E++SFSA + K V ID + V +G + D+ Sbjct: 881 IGARRLHTVLERIVEELSFSAPEKYTKFIADGGAGELVVTIDVKDVDEALGSMLKKDDLS 940 Query: 434 HFIL 437 F+L Sbjct: 941 RFVL 944 >gi|152990746|ref|YP_001356468.1| ATP-dependent protease ATP-binding subunit HslU [Nitratiruptor sp. SB155-2] gi|151422607|dbj|BAF70111.1| ATP-dependent protease HslVU, ATPase subunit HslU [Nitratiruptor sp. SB155-2] Length = 443 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 302/445 (67%), Gaps = 14/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P+EIVS LD YIIGQ++AK+ +AIALRNR+RR QLP +++DE+ PKNIL++G TGV Sbjct: 1 MDLTPKEIVSYLDEYIIGQKEAKKVIAIALRNRYRRMQLPKEMQDEITPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD---- 120 GKT I+RRLA+ PF+KVE +K+TE+G+VGR+VE ++RDLV A+ +V+E ++ Sbjct: 61 GKTEIARRLAKSLDLPFVKVEASKYTEVGFVGRDVESMVRDLVANALVLVKEIHKERHAK 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTSS 174 ++ E + E++L L + RE +++L GE+ + +I+IE+ S Sbjct: 121 DIEEYVTKKILEKLLPPLPKMASEEKKREYQKSYEKMKERLEKGELDNLKIEIELPKHSV 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 + + ++P + +++++F+ +G ++K K +SV++ L + S+ L+DM+ + Sbjct: 181 SLEDTNLPPELAHAQESIAKIFT--LGLNKEKIKKEVSVKEAKELLKNEASEALLDMEQI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 +++++ + GI+F+DE DK+ S G S+EGVQRDLLP+VEGS+VSTK+G I Sbjct: 239 KQEALKKAQEEGIIFIDEIDKVAVSSSSQGRQDPSKEGVQRDLLPIVEGSTVSTKWGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIA+GAFH+S+P DL+PE+QGRFP+RV L SL++ ILT T+++LI QY+ L Sbjct: 299 TDHILFIAAGAFHLSKPCDLIPELQGRFPLRVELDSLDEEALYKILTMTKNSLIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + EG+ L+F +D++ A+A A + N + DIGARRL TV+E +LE+ISF A + + +T+ Sbjct: 359 LAVEGVKLEFNDDALRAIAKYAHSANQKIEDIGARRLHTVIENLLEEISFEADEHKGETI 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 ID YV +G+ + D+ +IL Sbjct: 419 TIDKAYVDEKLGEVVANEDLAKYIL 443 >gi|257869688|ref|ZP_05649341.1| heat shock protein HslVU [Enterococcus gallinarum EG2] gi|257803852|gb|EEV32674.1| heat shock protein HslVU [Enterococcus gallinarum EG2] Length = 465 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/467 (43%), Positives = 300/467 (64%), Gaps = 41/467 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SP+EIV ELD+YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKNIL++GPTGVG Sbjct: 5 NISPKEIVKELDQYIVGQTSAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ APF+K+E TKFTE+GYVGR+VE +IRDLV+ AI IV++ + VR Q Sbjct: 65 KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMIRDLVENAIQIVKKEQYKNVRLQ 124 Query: 126 ASINAEERILDALV-----------------------GKTATS----------NTREVFR 152 A A R++ LV G+ A + R+ Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKSANPYEQMMNMFNPGQQAEEPKEELTDEIRSNRQAIY 184 Query: 153 KKLRDGEISDKEIDIEVAD--TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 ++L G + ++E+ I+V + T S + N G +GI +L+E + +K + + Sbjct: 185 EQLEKGLLDNREVTIQVDEPKTQSPMMNN---GLEQMGI-DLNETLG-ALKPQKKIERTV 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +V++ L+++ES +L++ +H ++++ E+ GI+FLDE DKI ++ +G VSREG Sbjct: 240 TVKEARELLIQEESSKLVNDADIHSAALRLAESSGIIFLDEIDKITSKSQQSG-EVSREG 298 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 299 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 358 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF ILT+ + LI QY L+ TE + + FT ++I +A++A +N +IGARRLQ Sbjct: 359 KEDFVKILTEPNNALIKQYIALLGTENVTVTFTLEAIQKIAEIAFQVNRDTDNIGARRLQ 418 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F ASD+Q + I YV + + D+ +IL Sbjct: 419 TILEKLLEDLLFEASDMQMGEITITEAYVEDKLASIAKDEDLSRYIL 465 >gi|223993423|ref|XP_002286395.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana CCMP1335] gi|220977710|gb|EED96036.1| heat shock protein HslVU, ATPase [Thalassiosira pseudonana CCMP1335] Length = 557 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/458 (43%), Positives = 302/458 (65%), Gaps = 27/458 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T P E+V+EL+R+I+GQ AK+AVAIA+RNRWRR+QLP L E+ P+N+L++GPTG Sbjct: 103 TIALRPTEVVTELNRHIVGQSSAKKAVAIAMRNRWRRRQLPPALLKEVTPRNVLMIGPTG 162 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT ++RR+A L+ APF+KVE TKFTE+GY GR+V+QI+RDL+DV++ + ++ + +++R Sbjct: 163 CGKTEVARRMASLSDAPFLKVEATKFTEVGYHGRDVDQIVRDLMDVSMALTKKRQTEKLR 222 Query: 124 EQASINAEERILDALVGKTATS---NTREVFRKKLRDGEISDKEIDIEVADT-------- 172 +A EERILD L+G T ++R+ FR LRDG + D E++++V + Sbjct: 223 GEAKGLVEERILDILIGPDGTGTNKSSRDSFRSMLRDGLLEDHELEVDVPENLGQGGGKD 282 Query: 173 -SSDISNFDIPGGASVGILNLSELFSKVMG---------SGRKKKIRMSVQKCYPELMRD 222 + F + + + +S+L K+ G + RKK ++ E+ + Sbjct: 283 GEGAVVAFGGDASSGMNVQAMSDLIRKLGGGGGQRRGPPTERKKMAISEAREVILEIELE 342 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RD-SGNGIGVSREGVQRDLLPLVE 280 + +D+ ++++ E GIVF+DE DKI + RD + S EGVQRDLLPLVE Sbjct: 343 KLLEKVDL---KKEAVAAAEESGIVFIDEIDKICSSRDYNSRSADASAEGVQRDLLPLVE 399 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 G+++STKYG++NTD++LFIASGAFH +P+D+LPE+QGR P+RV L L + D ILT+ Sbjct: 400 GTTISTKYGNVNTDYMLFIASGAFHAVKPSDMLPELQGRLPIRVELNGLTEEDLYKILTE 459 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 E+NL+ Q EL+KTEG+ L F +D++ +A A LN TV +IGARRL TVMER++E+I Sbjct: 460 PEANLVRQQIELIKTEGVTLSFEDDALREIAKTAALLNRTVENIGARRLHTVMERIMEEI 519 Query: 401 SFSASDLQE-KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 SF A+++++ VV+ + V+ + D + +D+ +IL Sbjct: 520 SFQAAEMEKGDDVVVTKKLVKERLSDVLTTSDLSKYIL 557 >gi|307720795|ref|YP_003891935.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas autotrophica DSM 16294] gi|306978888|gb|ADN08923.1| heat shock protein HslVU, ATPase subunit HslU [Sulfurimonas autotrophica DSM 16294] Length = 442 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/446 (45%), Positives = 297/446 (66%), Gaps = 17/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+I Q+DAK+ +A+ALR R+RR QL +L++E+ PKNIL++G TGV Sbjct: 1 MNLTPKEIVEYLDNYVIAQKDAKKTIALALRTRYRRMQLDDELKNEITPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRRDE 121 GKT ISRRLA++ PFIKVE +K+TE+G+VGR+VE +IRDLV +I+IV+ E E Sbjct: 61 GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVNSISIVKAEQEKANKE 120 Query: 122 VREQASINA-EERILDALVGKTATSNTR------EVFRKKLRDGEISDKEIDIEVADTSS 174 E IN E++L L + S E K++ GE+ DK I++E+ + Sbjct: 121 KIENYIINKITEKLLPPLPAGASESKKDDYQRLLEAMEKRIESGEMDDKVIELEIEKLNV 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232 + ++ ++P + + E FSKV + K+ K ++V+ L ++ + +L+DM Sbjct: 181 EFNDTNLPPEMA----KVQESFSKVFATINKEDNKKEVTVKDAKILLRQEAATKLLDMTR 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291 V+ ++++ EN GI+FLDE DKI + G S+EGVQRDLLP+VEGSSVSTKYG+I Sbjct: 237 VNAEALRRAENGGIIFLDEIDKIALSEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTI 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L++L + ILT T+S+L+ QY+ Sbjct: 297 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELEALTEDTLYKILTQTQSSLLKQYQA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ EG+ L F ++++ A+A +A N T DIGARRL TV+E +LEDISF+A++ + K Sbjct: 357 LLAVEGMELIFEDEAVRAIAKLAHRANETAEDIGARRLHTVLELILEDISFNAAEYKGKE 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 +I A+ V + D + D+ +IL Sbjct: 417 FIITAKLVHEKLDDAVEDEDLSRYIL 442 >gi|242373545|ref|ZP_04819119.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis M23864:W1] gi|242348908|gb|EES40510.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis M23864:W1] Length = 467 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/474 (40%), Positives = 306/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEEAKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDVA+ +V+E ++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKEEKKALVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 A ++++ LV K + N R Sbjct: 128 ISKANDKLVKLLVPSMKKKASQGNNPLENLFGGAIPNFGQNNEEEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +K+L +G++ +++ I+V A++G+L + ++ +++M K Sbjct: 188 KKQLDEGKLEKEKVRIKVEQDP-----------AAMGMLGTNQNQQMQDMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ +SV+ L D +D LID +T +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVSVETARKILADDYADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+SL+ DF ILT+ + +LI QY+ L++TE + ++F+E+++ LA++A +N + Sbjct: 354 VELESLSVDDFVRILTEPKLSLIKQYEALLQTEEVTVNFSEEAVKRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPNMPHAVVDITPQYVDDKLKTISTNKDLSAFIL 467 >gi|229549933|ref|ZP_04438658.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis ATCC 29200] gi|255972716|ref|ZP_05423302.1| heat shock protein HslU [Enterococcus faecalis T1] gi|312951576|ref|ZP_07770472.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0102] gi|229304946|gb|EEN70942.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis ATCC 29200] gi|255963734|gb|EET96210.1| heat shock protein HslU [Enterococcus faecalis T1] gi|310630542|gb|EFQ13825.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0102] gi|315152402|gb|EFT96418.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0031] Length = 467 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 298/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R+ Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRQT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|295113043|emb|CBL31680.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus sp. 7L76] gi|315145125|gb|EFT89141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX2141] gi|315160541|gb|EFU04558.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0645] gi|323480807|gb|ADX80246.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecalis 62] Length = 467 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/469 (42%), Positives = 296/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 211 SV--QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 SV ++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 SVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|257085105|ref|ZP_05579466.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis Fly1] gi|257416171|ref|ZP_05593165.1| heat shock protein HslU [Enterococcus faecalis AR01/DG] gi|257419373|ref|ZP_05596367.1| heat shock protein hslU [Enterococcus faecalis T11] gi|256993135|gb|EEU80437.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis Fly1] gi|257157999|gb|EEU87959.1| heat shock protein HslU [Enterococcus faecalis ARO1/DG] gi|257161201|gb|EEU91161.1| heat shock protein hslU [Enterococcus faecalis T11] Length = 467 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|327535211|gb|AEA94045.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus faecalis OG1RF] Length = 467 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNLAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|29376200|ref|NP_815354.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus faecalis V583] gi|227518831|ref|ZP_03948880.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX0104] gi|227553448|ref|ZP_03983497.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis HH22] gi|255975768|ref|ZP_05426354.1| heat shock protein HslU [Enterococcus faecalis T2] gi|256619141|ref|ZP_05475987.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200] gi|256762577|ref|ZP_05503157.1| heat shock protein HslU [Enterococcus faecalis T3] gi|256959057|ref|ZP_05563228.1| heat shock protein HslU [Enterococcus faecalis DS5] gi|256961850|ref|ZP_05566021.1| heat shock protein HslU [Enterococcus faecalis Merz96] gi|256965047|ref|ZP_05569218.1| heat shock protein HslU [Enterococcus faecalis HIP11704] gi|257079088|ref|ZP_05573449.1| heat shock protein HslU [Enterococcus faecalis JH1] gi|257082473|ref|ZP_05576834.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis E1Sol] gi|257086666|ref|ZP_05581027.1| heat shock protein HslU [Enterococcus faecalis D6] gi|293382915|ref|ZP_06628833.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis R712] gi|293389596|ref|ZP_06634053.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis S613] gi|294781641|ref|ZP_06746977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis PC1.1] gi|300861163|ref|ZP_07107250.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TUSoD Ef11] gi|307270940|ref|ZP_07552223.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX4248] gi|307273145|ref|ZP_07554391.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0855] gi|307274880|ref|ZP_07556043.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX2134] gi|307277987|ref|ZP_07559071.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0860] gi|307289185|ref|ZP_07569141.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0109] gi|307291918|ref|ZP_07571787.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0411] gi|312899493|ref|ZP_07758823.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0470] gi|312903386|ref|ZP_07762566.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0635] gi|312907615|ref|ZP_07766606.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis DAPTO 512] gi|312910232|ref|ZP_07769079.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis DAPTO 516] gi|62286875|sp|Q834K4|HSLU_ENTFA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|29343663|gb|AAO81424.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecalis V583] gi|227073744|gb|EEI11707.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX0104] gi|227177424|gb|EEI58396.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis HH22] gi|255968640|gb|EET99262.1| heat shock protein HslU [Enterococcus faecalis T2] gi|256598668|gb|EEU17844.1| heat shock protein HslU [Enterococcus faecalis ATCC 4200] gi|256683828|gb|EEU23523.1| heat shock protein HslU [Enterococcus faecalis T3] gi|256949553|gb|EEU66185.1| heat shock protein HslU [Enterococcus faecalis DS5] gi|256952346|gb|EEU68978.1| heat shock protein HslU [Enterococcus faecalis Merz96] gi|256955543|gb|EEU72175.1| heat shock protein HslU [Enterococcus faecalis HIP11704] gi|256987118|gb|EEU74420.1| heat shock protein HslU [Enterococcus faecalis JH1] gi|256990503|gb|EEU77805.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis E1Sol] gi|256994696|gb|EEU81998.1| heat shock protein HslU [Enterococcus faecalis D6] gi|291079580|gb|EFE16944.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis R712] gi|291081213|gb|EFE18176.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis S613] gi|294451337|gb|EFG19803.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis PC1.1] gi|300850202|gb|EFK77952.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TUSoD Ef11] gi|306496916|gb|EFM66464.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0411] gi|306499894|gb|EFM69255.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0109] gi|306505384|gb|EFM74570.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0860] gi|306508328|gb|EFM77435.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX2134] gi|306510130|gb|EFM79154.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0855] gi|306512438|gb|EFM81087.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX4248] gi|310626643|gb|EFQ09926.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis DAPTO 512] gi|310633262|gb|EFQ16545.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0635] gi|311289505|gb|EFQ68061.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis DAPTO 516] gi|311293363|gb|EFQ71919.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0470] gi|315027188|gb|EFT39120.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX2137] gi|315034049|gb|EFT45981.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0017] gi|315037057|gb|EFT48989.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0027] gi|315147342|gb|EFT91358.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX4244] gi|315164094|gb|EFU08111.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX1302] gi|315168956|gb|EFU12973.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX1341] gi|315169810|gb|EFU13827.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX1342] gi|315575786|gb|EFU87977.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0309B] gi|315577628|gb|EFU89819.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0630] gi|315580438|gb|EFU92629.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0309A] gi|329571618|gb|EGG53299.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX1467] Length = 467 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|229545744|ref|ZP_04434469.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX1322] gi|256853203|ref|ZP_05558573.1| heat shock protein HslVU [Enterococcus faecalis T8] gi|229309194|gb|EEN75181.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX1322] gi|256711662|gb|EEU26700.1| heat shock protein HslVU [Enterococcus faecalis T8] gi|315029305|gb|EFT41237.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX4000] Length = 467 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKKQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|315150458|gb|EFT94474.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0012] Length = 467 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRANRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQDLLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|302191328|ref|ZP_07267582.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus iners AB-1] gi|309805719|ref|ZP_07699759.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 09V1-c] gi|309809302|ref|ZP_07703171.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners SPIN 2503V10-D] gi|312871368|ref|ZP_07731463.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 3008A-a] gi|312873946|ref|ZP_07733982.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2052A-d] gi|312875447|ref|ZP_07735450.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2053A-b] gi|325911979|ref|ZP_08174381.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners UPII 143-D] gi|325912848|ref|ZP_08175226.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners UPII 60-B] gi|329921323|ref|ZP_08277761.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners SPIN 1401G] gi|308164972|gb|EFO67215.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 09V1-c] gi|308170415|gb|EFO72439.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners SPIN 2503V10-D] gi|311088958|gb|EFQ47399.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2053A-b] gi|311090495|gb|EFQ48903.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2052A-d] gi|311093021|gb|EFQ51370.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 3008A-a] gi|325476164|gb|EGC79328.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners UPII 143-D] gi|325477841|gb|EGC80975.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners UPII 60-B] gi|328934615|gb|EGG31119.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners SPIN 1401G] Length = 464 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 295/467 (63%), Gaps = 43/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT Sbjct: 4 TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I ++ D V+ +A+ Sbjct: 64 EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123 Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152 +A +R++ LV + R Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 183 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210 KL+ G + + E+ + V + D+ G +++S L +M KK++R + Sbjct: 184 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 SV+ L+++E+ +LI+ D++++ ++ + GI+F+DE DK VA D VSREG Sbjct: 238 SVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE+QGRFP+RV L L Sbjct: 298 VQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLR 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 +SDF IL D++++L+ QY+ L+KT+GI L FT+++I LA +A ++N ++GARRL Sbjct: 358 ESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI F D+ E + + +YV +GD + D+ FIL Sbjct: 418 TILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 464 >gi|259500639|ref|ZP_05743541.1| heat shock protein HslVU [Lactobacillus iners DSM 13335] gi|315653526|ref|ZP_07906447.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus iners ATCC 55195] gi|259168023|gb|EEW52518.1| heat shock protein HslVU [Lactobacillus iners DSM 13335] gi|315489217|gb|EFU78858.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus iners ATCC 55195] Length = 471 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 295/467 (63%), Gaps = 43/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT Sbjct: 11 TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 70 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I ++ D V+ +A+ Sbjct: 71 EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 130 Query: 128 INAEERILDALVGKTATS-----------------------------------NTREVFR 152 +A +R++ LV + R Sbjct: 131 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDEDDEELDDQIIDKRASVA 190 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210 KL+ G + + E+ + V + D+ G +++S L +M KK++R + Sbjct: 191 DKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTL 244 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 SV+ L+++E+ +LI+ D++++ ++ + GI+F+DE DK VA D VSREG Sbjct: 245 SVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREG 304 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE+QGRFP+RV L L Sbjct: 305 VQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLR 364 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 +SDF IL D++++L+ QY+ L+KT+GI L FT+++I LA +A ++N ++GARRL Sbjct: 365 ESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLA 424 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI F D+ E + + +YV +GD + D+ FIL Sbjct: 425 TILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 471 >gi|312872351|ref|ZP_07732421.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2062A-h1] gi|311092174|gb|EFQ50548.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LEAF 2062A-h1] Length = 465 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/468 (42%), Positives = 295/468 (63%), Gaps = 44/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT Sbjct: 4 TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I ++ D V+ +A+ Sbjct: 64 EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123 Query: 128 INAEERILDALVGKTATS------------------------------------NTREVF 151 +A +R++ LV + R Sbjct: 124 EHANDRLIKLLVPGFGDEEEEDDPSERWVDFFSDTLDDEDDDDEDDEELDDQIIDKRASV 183 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209 KL+ G + + E+ + V + D+ G +++S L +M KK++R Sbjct: 184 ADKLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRT 237 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV+ L+++E+ +LI+ D++++ ++ + GI+F+DE DK VA D VSRE Sbjct: 238 LSVKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSRE 297 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE+QGRFP+RV L L Sbjct: 298 GVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPL 357 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 +SDF IL D++++L+ QY+ L+KT+GI L FT+++I LA +A ++N ++GARRL Sbjct: 358 RESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRL 417 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI F D+ E + + +YV +GD + D+ FIL Sbjct: 418 ATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 465 >gi|282927596|ref|ZP_06335212.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A10102] gi|282590599|gb|EFB95676.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A10102] Length = 467 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVEAARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|220917978|ref|YP_002493282.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter dehalogenans 2CP-1] gi|219955832|gb|ACL66216.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter dehalogenans 2CP-1] Length = 480 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/472 (45%), Positives = 316/472 (66%), Gaps = 40/472 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELDRY++GQ AKRAVAIALRNRWRRQ++ +LRDE++PKNI+++GPTGVG Sbjct: 9 DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E ++RE+ Sbjct: 69 KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128 Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155 A AEE++LDAL G+ A + RE R +L Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207 R G + D +++E+++ + + F PG G + NL + L + G GRK+K Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248 Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265 +++V++ L +E+ R++DM+ V R+++ +N GIVF+DE DKI D G G Sbjct: 249 RKVNVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L + D IL + ++L+ QY L+ TEG+ + ++++D +A +A +N + +IG Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDEAVDEIARIAAEVNERMENIG 428 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL TVMER+L+ +SF S+L+ + +V+DA YVR + + D+ +IL Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480 >gi|21282866|ref|NP_645954.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MW2] gi|49486093|ref|YP_043314.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MSSA476] gi|57651823|ref|YP_186129.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus COL] gi|87160912|ref|YP_493844.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194962|ref|YP_499762.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267744|ref|YP_001246687.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus JH9] gi|150393802|ref|YP_001316477.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus JH1] gi|151221376|ref|YP_001332198.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus str. Newman] gi|161509420|ref|YP_001575079.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142044|ref|ZP_03566537.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315610|ref|ZP_04838823.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257795690|ref|ZP_05644669.1| heat shock protein HslVU [Staphylococcus aureus A9781] gi|258415914|ref|ZP_05682184.1| heat shock protein HslVU [Staphylococcus aureus A9763] gi|258421676|ref|ZP_05684600.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9719] gi|258423905|ref|ZP_05686790.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9635] gi|258444592|ref|ZP_05692921.1| heat shock protein HslVU [Staphylococcus aureus A8115] gi|258447575|ref|ZP_05695719.1| heat shock protein HslVU [Staphylococcus aureus A6300] gi|258449417|ref|ZP_05697520.1| heat shock protein HslVU [Staphylococcus aureus A6224] gi|258452553|ref|ZP_05700559.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A5948] gi|258454796|ref|ZP_05702760.1| heat shock protein HslVU [Staphylococcus aureus A5937] gi|262048148|ref|ZP_06021035.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus D30] gi|262051316|ref|ZP_06023539.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus 930918-3] gi|269202870|ref|YP_003282139.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ED98] gi|282892742|ref|ZP_06300977.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A8117] gi|282916514|ref|ZP_06324272.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus D139] gi|282920498|ref|ZP_06328219.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9765] gi|283770318|ref|ZP_06343210.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus aureus subsp. aureus H19] gi|284024247|ref|ZP_06378645.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus 132] gi|294848249|ref|ZP_06788996.1| heat shock protein HslVU [Staphylococcus aureus A9754] gi|295406190|ref|ZP_06815997.1| heat shock protein HslVU [Staphylococcus aureus A8819] gi|296274812|ref|ZP_06857319.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MR1] gi|297244418|ref|ZP_06928301.1| heat shock protein HslVU [Staphylococcus aureus A8796] gi|23821703|sp|Q8NWZ7|HSLU_STAAW RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|56748978|sp|Q6G9V9|HSLU_STAAS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|62286700|sp|Q5HGH8|HSLU_STAAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123003474|sp|Q2FZ28|HSLU_STAA8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|123763305|sp|Q2FHI4|HSLU_STAA3 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|172048864|sp|A6QGF4|HSLU_STAAE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043923|sp|A6U172|HSLU_STAA2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043924|sp|A5ISD8|HSLU_STAA9 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|189043925|sp|A8Z3T4|HSLU_STAAT RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|21204305|dbj|BAB95002.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus MW2] gi|49244536|emb|CAG42965.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|57286009|gb|AAW38103.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus COL] gi|87126886|gb|ABD21400.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202520|gb|ABD30330.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740813|gb|ABQ49111.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus JH9] gi|149946254|gb|ABR52190.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus JH1] gi|150374176|dbj|BAF67436.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368229|gb|ABX29200.1| T01 family HslU component of HsIUV peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789662|gb|EEV28002.1| heat shock protein HslVU [Staphylococcus aureus A9781] gi|257839250|gb|EEV63724.1| heat shock protein HslVU [Staphylococcus aureus A9763] gi|257842362|gb|EEV66787.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9719] gi|257845934|gb|EEV69963.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9635] gi|257850085|gb|EEV74038.1| heat shock protein HslVU [Staphylococcus aureus A8115] gi|257853766|gb|EEV76725.1| heat shock protein HslVU [Staphylococcus aureus A6300] gi|257857405|gb|EEV80303.1| heat shock protein HslVU [Staphylococcus aureus A6224] gi|257859771|gb|EEV82613.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A5948] gi|257863179|gb|EEV85943.1| heat shock protein HslVU [Staphylococcus aureus A5937] gi|259160691|gb|EEW45712.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus 930918-3] gi|259163714|gb|EEW48269.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus D30] gi|262075160|gb|ACY11133.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ED98] gi|269940745|emb|CBI49127.1| putative ATP-dependent protease ATP-bindingsubunit [Staphylococcus aureus subsp. aureus TW20] gi|282319001|gb|EFB49353.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus D139] gi|282594160|gb|EFB99147.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A9765] gi|282764739|gb|EFC04864.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus A8117] gi|283460465|gb|EFC07555.1| ATP-dependent hsl protease ATP-binding subunit hslU [Staphylococcus aureus subsp. aureus H19] gi|283470469|emb|CAQ49680.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus ST398] gi|285816936|gb|ADC37423.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus 04-02981] gi|294825049|gb|EFG41471.1| heat shock protein HslVU [Staphylococcus aureus A9754] gi|294968778|gb|EFG44800.1| heat shock protein HslVU [Staphylococcus aureus A8819] gi|297178448|gb|EFH37694.1| heat shock protein HslVU [Staphylococcus aureus A8796] gi|298694546|gb|ADI97768.1| ATP-dependent protease ATP-binding subunit of heat shock protein [Staphylococcus aureus subsp. aureus ED133] gi|302332860|gb|ADL23053.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|312829648|emb|CBX34490.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131047|gb|EFT87031.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS03] gi|315198494|gb|EFU28823.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS01] gi|329313924|gb|AEB88337.1| ATP-dependent protease ATPase subunit HslU [Staphylococcus aureus subsp. aureus T0131] gi|329727195|gb|EGG63651.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus 21172] gi|329727822|gb|EGG64273.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus 21189] Length = 467 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|253733508|ref|ZP_04867673.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH130] gi|300912181|ref|ZP_07129624.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus TCH70] gi|304381182|ref|ZP_07363835.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253728562|gb|EES97291.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH130] gi|300886427|gb|EFK81629.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus TCH70] gi|302751077|gb|ADL65254.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340165|gb|EFM06106.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140929|gb|EFW32776.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144355|gb|EFW36121.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323441032|gb|EGA98739.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus O11] gi|323443901|gb|EGB01512.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus O46] Length = 470 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 71 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 357 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|329733679|gb|EGG70007.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus 21193] Length = 467 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMINQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|189501893|ref|YP_001957610.1| ATP-dependent protease ATP-binding subunit HslU [Candidatus Amoebophilus asiaticus 5a2] gi|189497334|gb|ACE05881.1| hypothetical protein Aasi_0471 [Candidatus Amoebophilus asiaticus 5a2] Length = 463 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/459 (44%), Positives = 303/459 (66%), Gaps = 31/459 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ LD+YI+GQQ AKR VAIALRNRWRR + +D++ ++ P NIL++G TGVGK Sbjct: 8 LTPREIVASLDKYIVGQQSAKRNVAIALRNRWRRMHVQSDIKADITPNNILMIGATGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF+KVE +KFTE+GYVGR+VE ++RDLV+ A+++V+ +R +EVR++A Sbjct: 68 TEIARRLAQVADAPFVKVEASKFTEVGYVGRDVEGMVRDLVEQAVSMVKAAREEEVRDKA 127 Query: 127 SINAEERILDALV-------GKTATSN---------------TREVFRKKLRDGEISDKE 164 + E+ ILDA++ G+ N TRE FR+K+R+G++ +++ Sbjct: 128 TQQVEDIILDAVIPPVSRMTGEETVENNLNSLEENDFNLSEQTRERFRQKIRNGDLDERK 187 Query: 165 IDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 IE+A SS + GG + + NL ++ S ++ K + ++++ + L+ Sbjct: 188 --IEIAINSSSTMGISMIGGGMMDESALSNLQDMISNMIPKKPKTR-KVTIAEAKQLLLP 244 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVE 280 +E ++LIDMD+V ++++ + GI+F+DE DKI G+G VSREGVQRDLLP+VE Sbjct: 245 EEINKLIDMDSVKEEALEKAKYNGIIFIDEMDKIAGSSYRGSGPDVSREGVQRDLLPIVE 304 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 GS+V+TKYG I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+K DF IL + Sbjct: 305 GSTVNTKYGVITTDHILFIAAGAFHISKPSDLIPELQGRFPIRVELDSLSKEDFCCILKE 364 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ L QY L + E + L F E +I+ +A+ A LN + +IGARRL TVM +L + Sbjct: 365 PKNALTKQYVALFEAENVKLTFEEKAIEEIAEKAFTLNQQMENIGARRLHTVMSHLLNEY 424 Query: 401 SFSASDL--QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F D E+ + I E V + + ++ +IL Sbjct: 425 LFDVPDKIEAEQEIKITKELVNEKLSELVKNKNLNEYIL 463 >gi|257422533|ref|ZP_05599523.1| heat shock protein hslVU [Enterococcus faecalis X98] gi|257164357|gb|EEU94317.1| heat shock protein hslVU [Enterococcus faecalis X98] gi|315155674|gb|EFT99690.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0043] Length = 467 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 296/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQVGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|253731873|ref|ZP_04866038.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724283|gb|EES93012.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 470 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 71 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 357 VELDSLSVEDFVRILTELKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|49483417|ref|YP_040641.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MRSA252] gi|282903809|ref|ZP_06311697.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus C160] gi|282905572|ref|ZP_06313427.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus subsp. aureus Btn1260] gi|282908547|ref|ZP_06316377.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus WW2703/97] gi|282918953|ref|ZP_06326688.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus C427] gi|283957997|ref|ZP_06375448.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295427741|ref|ZP_06820373.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus EMRSA16] gi|56749032|sp|Q6GHI1|HSLU_STAAR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|49241546|emb|CAG40232.1| putative ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282316763|gb|EFB47137.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus C427] gi|282327609|gb|EFB57892.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330864|gb|EFB60378.1| heat shock protein HslVU ATPase subunit HslU [Staphylococcus aureus subsp. aureus Btn1260] gi|282595427|gb|EFC00391.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus C160] gi|283790146|gb|EFC28963.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295128099|gb|EFG57733.1| heat shock protein HslVU [Staphylococcus aureus subsp. aureus EMRSA16] gi|315194141|gb|EFU24534.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 467 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|15924244|ref|NP_371778.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus Mu50] gi|15926837|ref|NP_374370.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus N315] gi|156979575|ref|YP_001441834.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus Mu3] gi|255006041|ref|ZP_05144642.2| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus Mu50-omega] gi|54037322|sp|P63797|HSLU_STAAN RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|54041268|sp|P63796|HSLU_STAAM RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|166221613|sp|A7X1N1|HSLU_STAA1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|13701054|dbj|BAB42349.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus N315] gi|14247024|dbj|BAB57416.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu50] gi|156721710|dbj|BAF78127.1| heat shock protein HslU [Staphylococcus aureus subsp. aureus Mu3] Length = 467 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTELGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|82750855|ref|YP_416596.1| ATP-dependent protease ATP-binding subunit HslU [Staphylococcus aureus RF122] gi|123549064|sp|Q2YXL4|HSLU_STAAB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|82656386|emb|CAI80805.1| ATP-dependent protease ATP-binding subunit of heat shock protein [Staphylococcus aureus RF122] Length = 467 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPLR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|297591301|ref|ZP_06949939.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MN8] gi|297576187|gb|EFH94903.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus MN8] Length = 470 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 71 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 357 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|257876705|ref|ZP_05656358.1| heat shock protein HslVU [Enterococcus casseliflavus EC20] gi|257810871|gb|EEV39691.1| heat shock protein HslVU [Enterococcus casseliflavus EC20] Length = 465 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL ++ ++ PKNIL++GPTGVG Sbjct: 5 NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ + VR Q Sbjct: 65 KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124 Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152 A A R++ LV K NT R+ Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 ++L G + ++E+ I+V + + + G +GI +L+E + +K + ++V Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNQAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L+++ES +L++ +H +++++ E+ GI+FLDE DK+ ++ +G VSREGVQ Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L K Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY L+ TE + + FT ++I+ +A++A +N +IGARRL T+ Sbjct: 361 DFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F AS++Q + I YV + + D+ +IL Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465 >gi|315172226|gb|EFU16243.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX1346] Length = 467 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/469 (42%), Positives = 297/469 (63%), Gaps = 41/469 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD+YI+GQQ AK++VA+ALRNR+RR QL +++ ++ PKN+L++GPTGV Sbjct: 4 LNKTPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQDITPKNLLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 64 GKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYA 123 Query: 125 QASINAEERILDALV------GKTATSN----------------------------TREV 150 QA A +R++ LV K A N R Sbjct: 124 QALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMFNMAQQQQEAQEEVTEDIRTNRRT 183 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR- 209 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI Sbjct: 184 ILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIER 238 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 ++V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ + VSR Sbjct: 239 TVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQSSGEVSR 298 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 299 EGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDD 358 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARR Sbjct: 359 LTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARR 418 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 419 LHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 467 >gi|257867813|ref|ZP_05647466.1| heat shock protein HslVU [Enterococcus casseliflavus EC30] gi|257874140|ref|ZP_05653793.1| heat shock protein HslVU [Enterococcus casseliflavus EC10] gi|257801896|gb|EEV30799.1| heat shock protein HslVU [Enterococcus casseliflavus EC30] gi|257808304|gb|EEV37126.1| heat shock protein HslVU [Enterococcus casseliflavus EC10] Length = 465 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL ++ ++ PKNIL++GPTGVG Sbjct: 5 NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ + VR Q Sbjct: 65 KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124 Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152 A A R++ LV K NT R+ Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 ++L G + ++E+ I+V + + + G +GI +L+E + +K + ++V Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNKAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L+++ES +L++ +H +++++ E+ GI+FLDE DK+ ++ +G VSREGVQ Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L K Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY L+ TE + + FT ++I+ +A++A +N +IGARRL T+ Sbjct: 361 DFVKILTEPNNALVKQYVALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F AS++Q + I YV + + D+ +IL Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465 >gi|325570909|ref|ZP_08146558.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus casseliflavus ATCC 12755] gi|325156313|gb|EGC68496.1| ATP-dependent hsl protease ATP-binding subunit HslU [Enterococcus casseliflavus ATCC 12755] Length = 465 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/465 (42%), Positives = 299/465 (64%), Gaps = 37/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N SPREIV ELD YI+GQ +AK++VA+ALRNR+RR QL ++ ++ PKNIL++GPTGVG Sbjct: 5 NKSPREIVKELDEYIVGQTNAKKSVAVALRNRYRRLQLDEKMQQDVTPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV++ + VR Q Sbjct: 65 KTEIARRLAKIVDAPFVKLEATKFTEVGYVGRDVESMVRDLVENAIQIVKKEQYKNVRIQ 124 Query: 126 ASINAEERILDALV---GKTATSNT------------------------------REVFR 152 A A R++ LV K NT R+ Sbjct: 125 AEKKANRRLVKVLVPGIKKEQKKNTNPYEQMMNMFNAAQQPEEPKEELTDEIRSNRQAIF 184 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 ++L G + ++E+ I+V + + + G +GI +L+E + +K + ++V Sbjct: 185 EQLEKGLLDNREVTIQVDEPKNQAPMMN-NGLEQMGI-DLNETLG-ALKPQKKIERTVTV 241 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 ++ L+++ES +L++ +H +++++ E+ GI+FLDE DK+ ++ +G VSREGVQ Sbjct: 242 KEARELLIQEESSKLVNDADIHSEALRLAESSGIIFLDEIDKVSSKSQQSG-EVSREGVQ 300 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS V+TKYG++ TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L K Sbjct: 301 RDILPIVEGSQVNTKYGTLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTKE 360 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY L+ TE + + FT ++I+ +A++A +N +IGARRL T+ Sbjct: 361 DFVKILTEPNNALVKQYIALLGTENVKVVFTMEAIEKIAEIAYQVNRDTDNIGARRLHTI 420 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F AS++Q + I YV + + D+ +IL Sbjct: 421 LEKLLEDLLFEASEMQMGEITITEAYVEEKLASIAKDEDLSRYIL 465 >gi|258434832|ref|ZP_05688906.1| heat shock protein HslVU [Staphylococcus aureus A9299] gi|257849193|gb|EEV73175.1| heat shock protein HslVU [Staphylococcus aureus A9299] Length = 467 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 305/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADIYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|282910826|ref|ZP_06318629.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus WBG10049] gi|282325431|gb|EFB55740.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus WBG10049] Length = 467 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|293568159|ref|ZP_06679495.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1071] gi|291589149|gb|EFF20961.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1071] Length = 466 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/466 (43%), Positives = 298/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153 NAE+R++ LV K +T+ NT R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + +E+ IEV D + G +GI +L+E S + KKK+ ++ Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLSALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + L+ QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|257425308|ref|ZP_05601733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 55/2053] gi|257427969|ref|ZP_05604367.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 65-1322] gi|257430602|ref|ZP_05606984.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257433362|ref|ZP_05609720.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus E1410] gi|257436204|ref|ZP_05612251.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M876] gi|282914031|ref|ZP_06321818.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M899] gi|282924076|ref|ZP_06331752.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus C101] gi|293501063|ref|ZP_06666914.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 58-424] gi|293510025|ref|ZP_06668733.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M809] gi|293526611|ref|ZP_06671296.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M1015] gi|257271765|gb|EEV03903.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 55/2053] gi|257274810|gb|EEV06297.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 65-1322] gi|257278730|gb|EEV09349.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257281455|gb|EEV11592.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus E1410] gi|257284486|gb|EEV14606.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M876] gi|282314048|gb|EFB44440.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus C101] gi|282322099|gb|EFB52423.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M899] gi|290920683|gb|EFD97746.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M1015] gi|291096068|gb|EFE26329.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus 58-424] gi|291466969|gb|EFF09487.1| heat shock protein HslVU, ATPase subunit HslU [Staphylococcus aureus subsp. aureus M809] Length = 467 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 68 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 127 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 128 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 187 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 188 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 233 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 234 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 293 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 294 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 353 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 354 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 413 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 414 IGARRLHTILEKMLEDLSFEAPRMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|312438367|gb|ADQ77438.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus TCH60] Length = 470 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 71 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + A E+++ LV K + +N R Sbjct: 131 TAKANEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVAVETARKILADSYADELIDRESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 357 VELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|197123189|ref|YP_002135140.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter sp. K] gi|196173038|gb|ACG74011.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter sp. K] Length = 480 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 214/472 (45%), Positives = 315/472 (66%), Gaps = 40/472 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELDRY++GQ AKRAVAIALRNRWRRQ++ +LRDE++PKNI+++GPTGVG Sbjct: 9 DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIVMIGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E ++RE+ Sbjct: 69 KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128 Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155 A AEE++LDAL G+ A + RE R +L Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAQPDEPQAAPASHPAGSAAGAREKARAQL 188 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207 R G + D +++E+++ + + F PG G + NL + L + G GRK+K Sbjct: 189 RAGTLDDDLVEVELSERAMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248 Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265 ++ V++ L +E+ R++DM+ V R+++ +N GIVF+DE DKI D G G Sbjct: 249 RKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L + D IL + ++L+ QY L+ TEG+ + +D++D +A +A +N + +IG Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENIG 428 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL TVMER+L+ +SF S+L+ + +V+DA YVR + + D+ +IL Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDAAYVRDRLQGIAQDEDLSRYIL 480 >gi|297208100|ref|ZP_06924531.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887343|gb|EFH26245.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 470 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/474 (40%), Positives = 304/474 (64%), Gaps = 57/474 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 11 LTPKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQEISPKNILMIGPTGVGK 70 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V+ ++ V+++A Sbjct: 71 TEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLVQDEA 130 Query: 127 SINAEERILDALV----GKTATSNT-------------------------------REVF 151 + E+++ LV K + +N R Sbjct: 131 TAKVNEKLVKLLVPSMKKKASQTNNPLESLFGGAIPNFGQNNEDEEEPPTEEIKTKRSEI 190 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL------NLSELFSKVMGSGRK 205 +++L +G++ +++ I+V PG ++G+L + E+ +++M K Sbjct: 191 KRQLEEGKLEKEKVRIKVEQD---------PG--ALGMLGTNQNQQMQEMMNQLMP---K 236 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ ++V+ L +D LID ++ +++++++ E GI+F+DE DK+ + +G Sbjct: 237 KKVEREVAVETARKILADSYADELIDQESANQEALELAEQMGIIFIDEIDKVATNNHNSG 296 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSR+GVQRD+LP++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+R Sbjct: 297 QDVSRQGVQRDILPILEGSVIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIR 356 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L SL+ DF ILT+ + +LI QY+ L++TE + ++FT+++I LA++A +N + Sbjct: 357 VELDSLSVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEIAYQVNQDTDN 416 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+SF A + V I +YV + + D+ FIL Sbjct: 417 IGARRLHTILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL 470 >gi|86159115|ref|YP_465900.1| ATP-dependent protease ATP-binding subunit HslU [Anaeromyxobacter dehalogenans 2CP-C] gi|85775626|gb|ABC82463.1| heat shock protein HslVU, ATPase subunit HslU [Anaeromyxobacter dehalogenans 2CP-C] Length = 480 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 214/472 (45%), Positives = 315/472 (66%), Gaps = 40/472 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREIV+ELDRY++GQ AKRAVAIALRNRWRRQ++ +LRDE++PKNI+++GPTGVG Sbjct: 9 DLTPREIVAELDRYVVGQAQAKRAVAIALRNRWRRQRVGPELRDEILPKNIIMIGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE +KFTE+GYVGR+V+ +IRDLV+ A+ +V+E ++RE+ Sbjct: 69 KTEIARRLARLAGAPFVKVEASKFTEVGYVGRDVDSMIRDLVEAAVKLVKEEEIAKLRER 128 Query: 126 ASINAEERILDALV--------------GKTA----------------TSNTREVFRKKL 155 A AEE++LDAL G+ A + R+ R +L Sbjct: 129 AREAAEEKVLDALGFGSGFGLGFRNPFGGRGAPAEEPQAAPASHPAGSAAGARDKARAQL 188 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPG------GASVGILNL--SELFSKVMGSGRKKK 207 R G + D +++E+++ S + F PG G + NL + L + G GRK+K Sbjct: 189 RAGTLDDDLVEVELSERSMPVMPFMGPGMEDMAQGLQDMVQNLGNNPLLGMLGGGGRKRK 248 Query: 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-- 265 ++ V++ L +E+ R++DM+ V R+++ +N GIVF+DE DKI D G G Sbjct: 249 RKVKVKEALELLTDEEAARMVDMERVTREALDRAQNAGIVFIDEIDKIAGGDGGGVRGPD 308 Query: 266 VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 VSR GVQRDLLP+VEGS+V+TKYG + TDH+LF+A+GAFHV++ +DL+PE+QGRFP+RV Sbjct: 309 VSRGGVQRDLLPIVEGSNVNTKYGVVKTDHMLFVAAGAFHVAKVSDLIPELQGRFPIRVE 368 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L + D IL + ++L+ QY L+ TEG+ + +D++D +A +A +N + +IG Sbjct: 369 LEPLTREDLVRILKEPRNSLVRQYTALLATEGVDVQIRDDAVDEIARIAAEVNERMENIG 428 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL TVMER+L+ +SF S+L+ + +V+DA YVR + + D+ +IL Sbjct: 429 ARRLHTVMERLLDQLSFEGSELRGQRIVVDATYVRDRLQGIAQDEDLSRYIL 480 >gi|227551197|ref|ZP_03981246.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium TX1330] gi|257896180|ref|ZP_05675833.1| heat shock protein HslU [Enterococcus faecium Com12] gi|293377180|ref|ZP_06623388.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium PC4.1] gi|227179665|gb|EEI60637.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium TX1330] gi|257832745|gb|EEV59166.1| heat shock protein HslU [Enterococcus faecium Com12] gi|292644200|gb|EFF62302.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium PC4.1] Length = 466 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 296/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153 NAE+R++ LV K +T+ R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + ++E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|257898817|ref|ZP_05678470.1| heat shock protein HslU [Enterococcus faecium Com15] gi|293570280|ref|ZP_06681349.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E980] gi|257836729|gb|EEV61803.1| heat shock protein HslU [Enterococcus faecium Com15] gi|291609687|gb|EFF38948.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E980] Length = 466 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 296/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153 NAE+R++ LV K +T+ R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + ++E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|118475468|ref|YP_892168.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter fetus subsp. fetus 82-40] gi|118414694|gb|ABK83114.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter fetus subsp. fetus 82-40] Length = 440 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/446 (43%), Positives = 300/446 (67%), Gaps = 19/446 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ DAKR +A+ALRNR+RR +L ++++++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL ++N+V++ +R++ + Sbjct: 61 GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120 Query: 125 QASINAEERILDALVGKTATSNTREVFRK----------KLRDGEISDKEIDIEVADTSS 174 + + E++IL+ L+ + + R KL+ GE+ I++++ Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDI----- 175 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233 D S F+ G + + E F KV+G KK + K E +++E S++++DM+++ Sbjct: 176 DQSTFEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKNEASEKILDMESI 235 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 ++++ EN GI+F+DE DK VA SGN S+EGVQRDLLP+VEGS+VSTK+G++ Sbjct: 236 KTEALKRAENEGIIFIDEIDK-VAVSSGNSGRQDPSKEGVQRDLLPIVEGSNVSTKFGNL 294 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV+L SL++ ILT +++L+ QYK Sbjct: 295 KTDHILFIAAGAFHISKPSDLIPELQGRFPLRVNLDSLDEKALYEILTKPKNSLLSQYKA 354 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ EG+ L+F+++SI +A V N N V DIGARRL TV+E+VLEDISF A + + Sbjct: 355 LLGVEGVELEFSDESIKEIAKVTQNTNQKVEDIGARRLHTVIEKVLEDISFDADSYKNEK 414 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V I E V +GD D+ +IL Sbjct: 415 VTITKELVDKKLGDICQNEDLAKYIL 440 >gi|257884851|ref|ZP_05664504.1| heat shock protein HslU [Enterococcus faecium 1,231,501] gi|261207610|ref|ZP_05922295.1| heat shock protein HslU [Enterococcus faecium TC 6] gi|289565122|ref|ZP_06445575.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium D344SRF] gi|294614815|ref|ZP_06694710.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1636] gi|294617494|ref|ZP_06697125.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1679] gi|257820689|gb|EEV47837.1| heat shock protein HslU [Enterococcus faecium 1,231,501] gi|260077993|gb|EEW65699.1| heat shock protein HslU [Enterococcus faecium TC 6] gi|289163129|gb|EFD10976.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium D344SRF] gi|291592277|gb|EFF23891.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1636] gi|291596234|gb|EFF27496.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1679] Length = 466 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/466 (43%), Positives = 297/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153 NAE+R++ LV K +T+ NT R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + +E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|69246763|ref|ZP_00604111.1| Heat shock protein HslU [Enterococcus faecium DO] gi|257878026|ref|ZP_05657679.1| heat shock protein HslU [Enterococcus faecium 1,230,933] gi|257881188|ref|ZP_05660841.1| heat shock protein HslU [Enterococcus faecium 1,231,502] gi|257889775|ref|ZP_05669428.1| heat shock protein HslU [Enterococcus faecium 1,231,410] gi|257892288|ref|ZP_05671941.1| heat shock protein HslU [Enterococcus faecium 1,231,408] gi|258616483|ref|ZP_05714253.1| ATP-dependent protease ATP-binding subunit HslU [Enterococcus faecium DO] gi|260559076|ref|ZP_05831262.1| heat shock protein HslU [Enterococcus faecium C68] gi|293563428|ref|ZP_06677877.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1162] gi|314938038|ref|ZP_07845348.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133a04] gi|314941976|ref|ZP_07848837.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133C] gi|314948771|ref|ZP_07852143.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0082] gi|314951789|ref|ZP_07854828.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133A] gi|314991804|ref|ZP_07857262.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133B] gi|314995845|ref|ZP_07860932.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133a01] gi|68195117|gb|EAN09577.1| Heat shock protein HslU [Enterococcus faecium DO] gi|257812254|gb|EEV41012.1| heat shock protein HslU [Enterococcus faecium 1,230,933] gi|257816846|gb|EEV44174.1| heat shock protein HslU [Enterococcus faecium 1,231,502] gi|257826135|gb|EEV52761.1| heat shock protein HslU [Enterococcus faecium 1,231,410] gi|257828667|gb|EEV55274.1| heat shock protein HslU [Enterococcus faecium 1,231,408] gi|260074833|gb|EEW63149.1| heat shock protein HslU [Enterococcus faecium C68] gi|291604689|gb|EFF34174.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1162] gi|313589949|gb|EFR68794.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133a01] gi|313593615|gb|EFR72460.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133B] gi|313596068|gb|EFR74913.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133A] gi|313599228|gb|EFR78073.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133C] gi|313642613|gb|EFS07193.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0133a04] gi|313644837|gb|EFS09417.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecium TX0082] Length = 466 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153 NAE+R++ LV K +T+ NT R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + +E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + L+ QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|71424579|ref|XP_812843.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi strain CL Brener] gi|71657076|ref|XP_817058.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi strain CL Brener] gi|70877671|gb|EAN90992.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] gi|70882227|gb|EAN95207.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] Length = 474 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/439 (44%), Positives = 286/439 (65%), Gaps = 16/439 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L N PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR + ++R+E+ PKNIL++GPT Sbjct: 48 LIRNMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPT 107 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L APF+KVE TKFTE+G+ GR+VE II DL ++ +++ + Sbjct: 108 GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQN 167 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 A AE+RIL AL G + FR+ LR G + D E+ +E+ + + Sbjct: 168 EAVARQKAEDRILKALAG------VSDGFREHLRSGALDDIEVMVELQEKAPKPKT---- 217 Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 A G+ +L +G+ + + ++ + ++ P + ++E ++++D + V ++++ Sbjct: 218 -AAGEGVFIAIDL-PGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRA 275 Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298 E GIV +DE DKIV G G S EGVQ+DLLPLVEG++VSTK+ I TD ILF Sbjct: 276 CEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILF 335 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 I SGAFH +P+D+L E+QGR P+RV LK L DF I+T+ + NLI Q+ +M+TEG+ Sbjct: 336 ICSGAFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGV 395 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FTED++ +A VA ++NSTV +IGARRL T+ E+V+E+ISF D + +T VIDAEY Sbjct: 396 KLVFTEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEY 455 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + + + D+ FIL Sbjct: 456 VKKSVENMVKKVDIKKFIL 474 >gi|222823762|ref|YP_002575336.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari RM2100] gi|222538984|gb|ACM64085.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter lari RM2100] Length = 439 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 304/447 (68%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV+ LD Y+IGQ++AK+ +AIALRNR+RR QL +L+D++MPKNIL++G TGV Sbjct: 1 MNLTPKEIVNFLDDYVIGQKNAKKIIAIALRNRYRRMQLSPELQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PF+KVE +K+TE+G+VGR+VE ++RDL + A+N+V++ +++ +E Sbjct: 61 GKTEIARRLAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLANAALNLVKQEEKEKNQE 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + + E +IL+ L+ + N+ E R KL+ G++ D I++E++ + Sbjct: 121 KINEYIENKILEKLLPPLPKGISEEKEQEYKNSLEKMRVKLKAGDLDDSIIEVEISQSVF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQK-CYPELMRDESDRLIDMD 231 D +N ++P GA I+ KV+G G KK + K L ++ S++++DM+ Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKVKDAKNALAQEASEKILDME 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DK+ V+ + N S+EGVQRDLLP+VEGS++ TK+G Sbjct: 233 SIKSEALRRAENEGIIFIDEIDKVAVSSSNSNRQDPSKEGVQRDLLPIVEGSTIQTKFGP 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEDALYAILTRPKNSLLTQYI 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 EL+KTE + L F + +I +A +A N + DIGARRL TV+E++LEDISF A + K Sbjct: 353 ELLKTEKVELVFEDAAIKEIAKIASKANEEMQDIGARRLHTVVEKLLEDISFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 ID V++ +GD D+ +IL Sbjct: 413 VYKIDDFKVQVKLGDIVENKDLARYIL 439 >gi|322824663|gb|EFZ29997.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] Length = 475 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/439 (44%), Positives = 286/439 (65%), Gaps = 16/439 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L N PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR + ++R+E+ PKNIL++GPT Sbjct: 48 LIRNMRPRELMRELDNYIIGQNEAKKAVAVALRNRWRRHHVGPEIREEIAPKNILMIGPT 107 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA+L APF+KVE TKFTE+G+ GR+VE II DL ++ +++ + Sbjct: 108 GVGKTEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNLMRQN 167 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIP 182 A AE+RIL AL G + FR+ LR G + D E+ +E+ + + Sbjct: 168 EAVARQKAEDRILKALAG------VSDGFREHLRSGALDDIEVMVELQEKAPKPKT---- 217 Query: 183 GGASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 A G+ +L +G+ + + ++ + ++ P + ++E ++++D + V ++++ Sbjct: 218 -AAGEGVFIAIDL-PGALGAAQTRTVKKLLKIKDALPAVQQEELEKMVDTEDVSAEALRA 275 Query: 241 VENYGIVFLDEFDKIVARDSG-NGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILF 298 E GIV +DE DKIV G G S EGVQ+DLLPLVEG++VSTK+ I TD ILF Sbjct: 276 CEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQIKTDKILF 335 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 I SGAFH +P+D+L E+QGR P+RV LK L DF I+T+ + NLI Q+ +M+TEG+ Sbjct: 336 ICSGAFHNVKPSDMLAELQGRLPIRVELKPLTSDDFHRIITEPKYNLIKQHIAMMETEGV 395 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FTED++ +A VA ++NSTV +IGARRL T+ E+V+E+ISF D + +T VIDAEY Sbjct: 396 KLVFTEDALWEIATVAAHINSTVQNIGARRLITITEKVVEEISFDGPDRKGETFVIDAEY 455 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + + + D+ FIL Sbjct: 456 VKKSVENMVKKVDIKKFIL 474 >gi|78777574|ref|YP_393889.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas denitrificans DSM 1251] gi|78498114|gb|ABB44654.1| Heat shock protein HslU [Sulfurimonas denitrificans DSM 1251] Length = 442 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/445 (43%), Positives = 297/445 (66%), Gaps = 15/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+I QQ+AK+ +A+ALR R+RR QL +L+ ++ PKNIL++G TGV Sbjct: 1 MNLTPKEIVEYLDEYVISQQNAKKTIALALRTRYRRMQLSPELQSDITPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT ISRRLA++ PFIKVE +K+TE+G+VGR+VE +IRDLV +I IV+ + +E RE Sbjct: 61 GKTEISRRLAKMMKVPFIKVEASKYTEVGFVGRDVESMIRDLVVASIAIVKAEKEEENRE 120 Query: 125 QASINAEERILDALVGKT---ATSNTRE-------VFRKKLRDGEISDKEIDIEVADTSS 174 + +I++ L+ A+ + ++ V +++ GE+ DK I +EV Sbjct: 121 KIDNYILNKIVEKLLPPLPLGASESKKDDYQRLLSVMEERVLSGEMDDKIIQLEVQKIHV 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233 + ++ ++P + + S +FS++ KK++ + K ++RDE S +LID + Sbjct: 181 EFNDTNLPPEMAKVQESFSRVFSQMNKEDNKKELSVKDAKI---ILRDEASAKLIDSTHI 237 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++++ EN GI+FLDE DKI + G S+EGVQRDLLP+VEGSSVSTKYG+IN Sbjct: 238 NVEALRRAENGGIIFLDEIDKIAISEKSQGRNDPSKEGVQRDLLPIVEGSSVSTKYGTIN 297 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIA+GAFH+ +P+DL+PE+QGRFP+RV L+SLN+ ILT T+++L+ QY+ L Sbjct: 298 TDHILFIAAGAFHLCKPSDLIPELQGRFPLRVELESLNEETLYKILTQTKNSLLRQYEAL 357 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + EG+ L F +++I A+A +A N DIGARRL TV+E++LED+SFSA++ ++K Sbjct: 358 LSVEGMKLTFEDEAIKAIAKLAHRANEIAEDIGARRLHTVIEKILEDVSFSANEYKDKEF 417 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 ++ ++ V + D+ +IL Sbjct: 418 IVTSKLVHEKLDTIVENDDLSRYIL 442 >gi|38046590|gb|AAR09158.1| ATP-dependent hslVU protease [Mannheimia varigena] Length = 399 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/402 (48%), Positives = 275/402 (68%), Gaps = 13/402 (3%) Query: 46 DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105 DLR E+ PKNIL++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRD Sbjct: 1 DLRQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 60 Query: 106 LVDVAINIVRESRRDEVREQASINAEERILDAL----------VGKTATSNTREVFRKKL 155 L DV++ +VR+ ++ + +A AE+RILD L V ++ +TR+ FRKKL Sbjct: 61 LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNQSTRQAFRKKL 120 Query: 156 RDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC 215 R+G++ DKEI+I+VA S P G L LF M + KK +M ++ Sbjct: 121 REGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG-MSPNKTKKRKMKIKDA 177 Query: 216 YPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI + +G VSREGVQRDL Sbjct: 178 LKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQRDL 237 Query: 276 LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFR 335 LP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QGR P+RV LKSL K DF Sbjct: 238 LPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLTKDDFE 297 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT+ ++L LQY+ELMKTEG+ ++FT++ I +A+ A +N +IGARRL TV+ER Sbjct: 298 RILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVNEKTENIGARRLHTVLER 357 Query: 396 VLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +++ ISF AS+ + + +VID YV + D D+ FIL Sbjct: 358 LMDGISFDASERRGEKIVIDENYVSEALNDVVENEDLSRFIL 399 >gi|157165582|ref|YP_001466813.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus 13826] gi|112801315|gb|EAT98659.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter concisus 13826] Length = 440 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV LD Y+IGQ+DAK+ +AIALRNR+RR +L L+D++MPKNIL++G TGV Sbjct: 1 MNLTPREIVKFLDDYVIGQKDAKKIIAIALRNRYRRMKLEKSLQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL + N+V+ + ++ ++ Sbjct: 61 GKTEIARRLSKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASYNLVKNEQSEKNQD 120 Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174 + + EE+I+ L+ K A+ + + K +LR+GE+ + I+IEV Sbjct: 121 KINAYIEEKIVSKLLPPLPKGASEEKQAEYAKSYDKMLNRLRNGELDELSIEIEVQQNPL 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 + + P A + E F K++G G K K M V+ L + +D+++D+++V Sbjct: 181 EAGSNVPPDMAQ-----MQESFIKIIGIGGKNIKKEMKVKDAKKALQSEANDKILDLESV 235 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 ++++ EN GI+F+DE DK+ V S N S+EGVQRDLLP+VEGS+V+TK+G++ Sbjct: 236 KTEALRRAENEGIIFIDEIDKVAVGSGSSNRQDPSKEGVQRDLLPIVEGSNVNTKFGNLK 295 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++ ILT +++L+ QY L Sbjct: 296 TDHILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDEDALYQILTQPKNSLLKQYIAL 355 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + TE + L+F +++I +A +A N + DIGARRL TV+ERV+EDISF AS+ + + Sbjct: 356 LSTENVELEFDDEAIKEIARIAHAANEKMEDIGARRLHTVIERVIEDISFEASEKSGEKI 415 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 + E V+ + D + D+ +IL Sbjct: 416 NVTKELVKERLKDVVEDQDLARYIL 440 >gi|191638402|ref|YP_001987568.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus casei BL23] gi|190712704|emb|CAQ66710.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus casei BL23] gi|327382431|gb|AEA53907.1| hypothetical protein LC2W_1574 [Lactobacillus casei LC2W] gi|327385630|gb|AEA57104.1| hypothetical protein LCBD_1607 [Lactobacillus casei BD-II] Length = 469 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A + N VS Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 299 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT++++D +A++A +N +IGAR Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469 >gi|257887686|ref|ZP_05667339.1| heat shock protein HslU [Enterococcus faecium 1,141,733] gi|257823740|gb|EEV50672.1| heat shock protein HslU [Enterococcus faecium 1,141,733] Length = 466 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/466 (42%), Positives = 295/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV+ELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVNELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA+ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKTVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATSN----------------------------TREVFRK 153 NAE+R++ LV K +T+ R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNNAEPQEEVTEDIRINRRTILE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + ++E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDNREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|294622309|ref|ZP_06701352.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium U0317] gi|291598201|gb|EFF29299.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium U0317] Length = 466 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153 NAE+R++ LV K +T+ NT R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + +E+ IEV D + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDSREVTIEVEDQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + L+ QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALVKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEMTITEAYVDDKLGSIAANEDLSRYIL 466 >gi|295696108|ref|YP_003589346.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM 2912] gi|295411710|gb|ADG06202.1| heat shock protein HslVU, ATPase subunit HslU [Bacillus tusciae DSM 2912] Length = 462 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/460 (44%), Positives = 304/460 (66%), Gaps = 30/460 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P++IV+ELD+YI+GQ++AKRAVA+ALRNR+RR +LP ++R+E++PKNIL++GPTGVG Sbjct: 5 QLTPKQIVAELDKYIVGQREAKRAVAVALRNRYRRNRLPDEMREEVVPKNILMIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ++RRLARL APF+KVE TKFTE+GYVGR+V+ ++RDLV+ AI +VR+ R EV + Sbjct: 65 KTELARRLARLVRAPFVKVEATKFTEVGYVGRDVDSMVRDLVETAIRMVRQERMAEVELE 124 Query: 126 ASINAEERILDALV----GKTATSNT------------------------REVFRKKLRD 157 A AEER++ L G T N RE ++L Sbjct: 125 ARKAAEERLIAILAHEGDGPTGFRNPLEMLFNPGQEQSRPREPDSKDSARREEVARRLAA 184 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 GE+ ++ I+IEV D++ + G + + +L + + RK+K +++V++ Sbjct: 185 GELEEQVIEIEVEDSTLPFVDVGGTGQFEEMGMQIQDLLGQFLPR-RKRKRKVTVREARH 243 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L + E+ +LIDMD V ++++ E GI+F+DE DKI +D +G VSREGVQRD+LP Sbjct: 244 ILTQQEAQKLIDMDEVQAEAVRRAEQSGIIFIDEIDKIAGKDR-HGPDVSREGVQRDILP 302 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V TKYG + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L SL+ DFR I Sbjct: 303 IVEGSTVMTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRIELHSLSAEDFRRI 362 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ LI QY L+ TEG+ + FT+ ++ LA++A +N +IGARRL T+ME+++ Sbjct: 363 LTEPRHALIKQYTALLATEGVNVVFTDAAVQRLAELAAAVNQQTENIGARRLNTLMEKLM 422 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+ F A D+ + I EYV + + D+ +IL Sbjct: 423 EDLFFEAPDIFLDKIEITPEYVDEKLASIAGDQDLSQYIL 462 >gi|239631509|ref|ZP_04674540.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525974|gb|EEQ64975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 470 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 7 TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 67 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 240 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A + N VS Sbjct: 241 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 300 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 301 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 360 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT++++D +A++A +N +IGAR Sbjct: 361 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 420 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ V + +YV IG ++++M +IL Sbjct: 421 RLATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 470 >gi|293556770|ref|ZP_06675333.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1039] gi|291601102|gb|EFF31391.1| heat shock protein HslVU, ATPase subunit HslU [Enterococcus faecium E1039] Length = 466 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 297/466 (63%), Gaps = 42/466 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IVSELD YI+GQ AK++VA+ALRNR+RR QL ++ ++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVSELDEYIVGQHAAKKSVAVALRNRYRRLQLDEKMQQDITPKNMLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + + V A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYTSAK 126 Query: 128 INAEERILDALV------GKTATS--------------NT--------------REVFRK 153 NAE+R++ LV K +T+ NT R + Sbjct: 127 KNAEKRLVKILVPGIKKEQKQSTNQFEQMMNLFNASQQNTAEPQEEVTEDIRINRRTVLE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 +L+ G + +E+ IEV + + G +GI +L+E + KKK+ ++ Sbjct: 187 QLQKGLLDSREVTIEVEEQKKPAPMMN-NGLEQMGI-DLNETLGALTP---KKKVERTVT 241 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +L+ +H ++I++ E GI+F+DE DKI ++ +G VSREGV Sbjct: 242 VKEALELLIKEESAKLVKDADIHSEAIKLAEESGIIFIDEIDKITSKSQQSG-EVSREGV 300 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS V+TKYG I TDH+LFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 301 QRDILPIVEGSQVNTKYGIIQTDHVLFIASGAFHLSKPSDLIPELQGRFPIRVELDDLTA 360 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF ILT+ + LI QY L+ TE + + FT+++I+ +A +A ++N +IGARRL T Sbjct: 361 EDFVKILTEPNNALIKQYVALIGTENVSVTFTKEAIERIAQIAFDVNRDTDNIGARRLHT 420 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ F A D+Q + I YV +G + D+ +IL Sbjct: 421 ILEKLLEDLLFEAPDMQMGEITITEAYVDDKLGSIAANEDLSRYIL 466 >gi|301066451|ref|YP_003788474.1| ATP-dependent protease HslVU ATPase subunit [Lactobacillus casei str. Zhang] gi|300438858|gb|ADK18624.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus casei str. Zhang] Length = 469 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A + N VS Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 299 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT++++D +A++A +N +IGAR Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ V + +YV IG ++++M +IL Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGAVTVTQQYVDDKIGHIAADSNMTRYIL 469 >gi|227535111|ref|ZP_03965160.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187252|gb|EEI67319.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 470 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 7 TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEINPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 67 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 126 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 127 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 186 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 187 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 240 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A + N VS Sbjct: 241 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGNKHNSGEVS 300 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 301 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 360 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT++++D +A++A +N +IGAR Sbjct: 361 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 420 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 421 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 470 >gi|330836612|ref|YP_004411253.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta coccoides DSM 17374] gi|329748515|gb|AEC01871.1| heat shock protein HslVU, ATPase subunit HslU [Spirochaeta coccoides DSM 17374] Length = 468 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 199/465 (42%), Positives = 300/465 (64%), Gaps = 39/465 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P IVSELD+YIIGQ DAK+ +A+A+R+R RR++LP LRDE+ P+NI+++GPTGVG Sbjct: 10 DMTPAMIVSELDKYIIGQTDAKKTIAVAIRSRSRRKKLPEALRDEIAPRNIIMIGPTGVG 69 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR++RLA APF+KVE TKFTEIGYVGR+VE ++RDL+ +A+ +V + D+ + Sbjct: 70 KTEIARRISRLANAPFVKVEATKFTEIGYVGRDVESMVRDLMGIAVQMVHKELGDQQEDM 129 Query: 126 ASINAEERILDALV-------------GK-------------TATSNTREVFRKKLRDGE 159 E+R+LD L+ GK ++ + RE R +LR G Sbjct: 130 VRQRVEDRLLDLLIPAAHQEPMTVFRDGKPVPMDSVRIPQSGSSDQSLREQIRAQLRAGS 189 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASV-----GILNLSELFSKVMGSGRKKKIRMSVQK 214 + + +D V+ + D+ G ++ + +L +F+ + +K +SV++ Sbjct: 190 LDETVVDFSVSPKKPTV-GIDMMGMGNMEDLQQAMNSLGSIFNNRSATHKK----LSVKR 244 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQ 272 L +E ++++D D V + + E GI+F+DE DK VA ++G G G VSREGVQ Sbjct: 245 AREILTEEELEKIVDQDKVVEIAKERTEQMGIIFIDEIDK-VAGNAGKGSGPDVSREGVQ 303 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG+ VSTK+G I+T HILFIA+GAFHVS+P+DL+PE+QGRFP+R L L Sbjct: 304 RDLLPIVEGTKVSTKWGVIDTTHILFIAAGAFHVSKPSDLIPELQGRFPLRTELSDLTAD 363 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + E+ +I QY +++TEG+ + F++D++ ++ +A +NST +IGARRL TV Sbjct: 364 DFYRILQEPENAIIKQYCAMLETEGVKVVFSDDALRRISVLAYEVNSTSENIGARRLYTV 423 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ME++LE++SF+ASDL +T+ I YV +G D+ +IL Sbjct: 424 MEKLLEEVSFTASDLSGQTIPITPAYVDERLGKIIQNPDLSRYIL 468 >gi|317180292|dbj|BAJ58078.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F32] Length = 443 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 193/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ ++EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDNREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D +T+ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGETI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|34557656|ref|NP_907471.1| ATP-dependent protease ATP-binding subunit HslU [Wolinella succinogenes DSM 1740] gi|34483373|emb|CAE10371.1| CLPY PROTEIN [Wolinella succinogenes] Length = 440 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/444 (44%), Positives = 304/444 (68%), Gaps = 17/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV+ LD YIIGQ++AK+ VAIALRNR+RR +L ++++E++PKNIL++G TGVGK Sbjct: 1 MTPKEIVAYLDEYIIGQKEAKKRVAIALRNRYRRMKLSKEMQEEVIPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+AR+ G PFIKVE +K+TE+G+VGR+VE ++RDLV AI +V+E +++ +E Sbjct: 61 TEIARRMARMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVGAAIALVKEEHKEKNQEGI 120 Query: 127 SINAEERILDALVG---KTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 E+I+ L+ K A+ ++ E ++++ +GE+ +I+I+ S D Sbjct: 121 DAYVIEKIVQKLIPPLPKGASEAKMQEYESSYERMKQRVINGEVDHLKIEIQPPKKSVDF 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDE-SDRLIDMDTVH 234 S ++P I+ + E +K + +K++++ V K EL++ E S+ L+DM+T+ Sbjct: 181 SEGNVPPE----IVRIQESLAKAFLNSQKEEMKKEVTVKEAKELLKIEASEALLDMETIK 236 Query: 235 RDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + ++ E GI+F+DE DKI V++ S + S+EGVQRDLLP+VEGS+VSTK+G I T Sbjct: 237 AEGLRRAEEEGIIFIDEMDKIAVSQGSSSRQDPSKEGVQRDLLPIVEGSTVSTKHGQIKT 296 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 D+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++ ILT T+++++ QY L+ Sbjct: 297 DYILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDEETLYKILTQTKNSILKQYIALL 356 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +TEG+ L F +++I ALA ++ N DIGARRL TV+E+VLE+ISF A + Q + VV Sbjct: 357 ETEGVELVFEDEAIRALAKLSQRANEKTEDIGARRLHTVIEKVLEEISFEAEEHQGEKVV 416 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I E V + D D+ +IL Sbjct: 417 ITKERVHERLDDLVENVDVARYIL 440 >gi|332686604|ref|YP_004456378.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus plutonius ATCC 35311] gi|332370613|dbj|BAK21569.1| ATP-dependent hsl protease ATP-binding subunit HslU [Melissococcus plutonius ATCC 35311] Length = 469 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 295/468 (63%), Gaps = 38/468 (8%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV ELD Y++GQ AK++VA+ALRNR+RR QL ++ E+ PKNIL++GPTGV Sbjct: 5 LNKTPKEIVKELDEYVVGQTAAKKSVAVALRNRYRRLQLEESMQQEITPKNILMIGPTGV 64 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+K+E TKFTE+GYVGR+VE ++RDLV+ AI IV + + V Sbjct: 65 GKTEIARRLAKIVCAPFVKIEATKFTEVGYVGRDVESMVRDLVENAIQIVEKEQYSRVYS 124 Query: 125 QASINAEERILDALVG-----KTATSNTR--------------------------EVFRK 153 QA A +R+ LV K +SN + +V RK Sbjct: 125 QALKKANQRLAKILVPGIKKEKKQSSNNQLEQMMQMFNTSMQQPVEEVEEVTEDIKVSRK 184 Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + +E+ I++ + + + G +GI +L+E + + ++I Sbjct: 185 TVLDQLEKGLLGSREVTIKIDEPKKTMPAMN-NGLEQMGI-DLNETLGSLTPKKKIERI- 241 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L+++E +L+ +H ++I++ E+ GI+F+DE DKI +++ N VSRE Sbjct: 242 VTVKEAQELLVKEELAKLVKEADIHSEAIRLAESSGIIFIDEMDKITSKNQQNTGEVSRE 301 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS V+TKYG+I TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 302 GVQRDILPIVEGSQVNTKYGTIQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDL 361 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 DF ILT+ + LI QY L+ TE + + FT+++I +A++A +N +IGARRL Sbjct: 362 TAEDFVRILTEPNNALIKQYMALVGTENVNITFTQEAITRIAEIAFRVNRDTDNIGARRL 421 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ER+LED+ F + D+Q + I YV + D D+ +IL Sbjct: 422 HTILERLLEDLLFESPDMQMGDITITEAYVDEKLIDIAQNEDLSRYIL 469 >gi|255089867|ref|XP_002506855.1| predicted protein [Micromonas sp. RCC299] gi|226522128|gb|ACO68113.1| predicted protein [Micromonas sp. RCC299] Length = 500 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 196/452 (43%), Positives = 292/452 (64%), Gaps = 24/452 (5%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T +P + V LDR+I+GQ DAKRA A+ALRNRWRR ++ LRDE++PKNIL++GPTG Sbjct: 55 TDGLTPSKTVELLDRFIVGQADAKRACAVALRNRWRRHRVDPSLRDEIVPKNILMIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT I+RRLA++ +PF+KVE TKFTE+G+ GR+V+QII+DLVD A++I + R Sbjct: 115 CGKTEIARRLAKITDSPFVKVEATKFTEVGFHGRDVDQIIKDLVDNAMHITKTKLRQRFE 174 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI-------DIEVADTSSDI 176 ++ + E +I+D + G+T+ TR+ F + RDG + + I E Sbjct: 175 KEVNEVVENKIVDFMCGETSGDVTRDAFLQMYRDGALDHRVIELELPEGGGEGKGMELGG 234 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN P + L +++ K RM+V++C P + E +RLI+ D V ++ Sbjct: 235 SNQMTPERKLIPGGRLGGRGARMT------KKRMTVRECRPLIEEMEYERLINSDVVVKE 288 Query: 237 SIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +++ VEN GIVFLDE DKIV + D +G S EGVQRDLLP++EGS V+TK+G++NTD Sbjct: 289 ALKAVENDGIVFLDEIDKIVSSSDHRHGADASSEGVQRDLLPIIEGSVVATKHGNVNTDQ 348 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIASGAFH +P+D+L E+QGR P++V LK L D ILT+ E+N++ Q + L++T Sbjct: 349 ILFIASGAFHQCKPSDMLAELQGRLPIKVELKGLTADDLLRILTEPEANVLKQQRALLET 408 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--------- 406 EG+ L FT++++ +A+++ +N TV +IGARRL TV+E+++E++SF A + Sbjct: 409 EGVELSFTDEAVRHIANLSAEVNRTVDNIGARRLHTVLEKIVEEVSFHAPEKVATYRETG 468 Query: 407 -LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +VID V IG+ +TD+ F+L Sbjct: 469 GIGPLKIVIDVPEVDGAIGELMQKTDLSRFVL 500 >gi|317010764|gb|ADU84511.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori SouthAfrica7] Length = 443 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ ++EI+IEV Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRK--- 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 N +I IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 181 --KNIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|297566080|ref|YP_003685052.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus DSM 9946] gi|296850529|gb|ADH63544.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus silvanus DSM 9946] Length = 418 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 205/435 (47%), Positives = 295/435 (67%), Gaps = 19/435 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P EIV ELD++IIGQ+ AK+AVA+ALRNR+RR++LPA L E++P+NIL++GPTGV Sbjct: 1 MNLTPAEIVRELDKHIIGQESAKKAVAVALRNRYRRKRLPAALAREIVPRNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + + +V + + +V E Sbjct: 61 GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEASYQMVLQELKAKVAE 120 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 +A+ AEE+ L AL+ +A +R G D+ ++IEV D S + + GG Sbjct: 121 RATAQAEEQ-LSALLRVSAFD---------IRSGRFDDQLVEIEV-DEESQLPFMGVLGG 169 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 + L + ++ R+ + RM V++ L E++RL+D + ++ ++ + Sbjct: 170 GD-QMQGLGNMLKGLLPQ-RRVRRRMRVKEALEVLKNQEAERLVDKEEATQEGLRRAQED 227 Query: 245 GIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVF+DE DK VAR G+ G VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+G Sbjct: 228 GIVFIDEIDK-VARKQGSVGGPDVSGEGVQRDLLPVVEGTVVSTRLGPVSTEHVLFIAAG 286 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHVS+P+DL+PE+QGRFP+RV L SL +F ILT+ ES+L+ QY EL+K +G + F Sbjct: 287 AFHVSKPSDLIPELQGRFPIRVELSSLGAEEFERILTEPESSLLKQYTELLKADGTEIHF 346 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T +++ A+A A N + DIGARRL TV+ERVLE++SF +DL + V I EYV Sbjct: 347 TPEAVRAIAQYAHAANRDLEDIGARRLSTVLERVLEEVSFQ-TDLGK--VEITKEYVEAR 403 Query: 423 IGDFPSETDMYHFIL 437 + + D+ +IL Sbjct: 404 LASVVASPDLSRYIL 418 >gi|282856241|ref|ZP_06265524.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter piscolens W5455] gi|282586000|gb|EFB91285.1| ATP-dependent protease HslVU, ATPase subunit [Pyramidobacter piscolens W5455] Length = 471 Score = 365 bits (938), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 205/465 (44%), Positives = 305/465 (65%), Gaps = 35/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N P IV LDRYIIGQ+ AKRAVA+ALRNR RR++LP DL E+ PKNIL+VGPTGVG Sbjct: 9 NLVPSAIVQYLDRYIIGQEKAKRAVAVALRNRLRRRKLPEDLAQEIAPKNILMVGPTGVG 68 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA L APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ +V++ V+ Sbjct: 69 KTEIARRLADLVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAMQMVKKRMIAGVQSV 128 Query: 126 ASINAEERILDAL--VGKTATS-------------------------------NTREVFR 152 A +A+ER++D L V K++++ +TRE Sbjct: 129 AFEHAQERLVDYLLPVRKSSSAAGIPTFLNYLKKEQAEQPEDAAPEESPAVRQSTRERML 188 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 L+ G++ ++E++I+V ++SS I++F +GI N+SE+ +M KK+ RM V Sbjct: 189 NMLKGGKLDEREVEIDVQESSSPIASFGNGEMGGIGI-NISEMLGGMMPKKSKKR-RMKV 246 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L +E+++LID++ ++++ + GI+F+DE DKIV+R G G VSREGVQ Sbjct: 247 KDALRVLQAEEAEKLIDIEAATQEALDKAQQEGIIFIDEIDKIVSRGRGGGPDVSREGVQ 306 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG SV+TKYG + TDHI FIA+GAFH ++P+DL+PE+QGR P+RV L +L K Sbjct: 307 RDLLPIVEGCSVTTKYGQVKTDHIFFIAAGAFHDAKPSDLVPELQGRLPIRVELTALGKE 366 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 + R IL + +LI Q L++TEG+ L FT+++++ +A +A +N + +IGARRL T+ Sbjct: 367 ELRRILIEPRHSLIHQSVALIETEGLELRFTDEAVEEIAAMAERMNLEMENIGARRLHTI 426 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LE+ISFSA + + + ID +V + + D+ ++L Sbjct: 427 LEQLLEEISFSAPERTGEAIEIDKSFVVKKLEPLVGDKDLRRYLL 471 >gi|83282486|ref|XP_729791.1| heat shock protein ATPase subunit HslU [Plasmodium yoelii yoelii str. 17XNL] gi|23488601|gb|EAA21356.1| heat shock protein HslVU, ATPase subunit HslU, putative [Plasmodium yoelii yoelii] Length = 761 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 188/439 (42%), Positives = 291/439 (66%), Gaps = 10/439 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR QL D++ +++PKNIL++GPTGVGKT Sbjct: 323 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGKTE 382 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + +E++EQA Sbjct: 383 IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKKQKSKMENEIKEQAEE 442 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD----TSSDISNFDIPGG 184 + IL +L+G + +E+++K L++G + DK I+I++ ++ +N + Sbjct: 443 TVDNIILYSLLGNSVKCEEKEIWKKYLKEGLLDDKIINIDIPSYINNNNNIFTNDSVENA 502 Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 + N + S K++ K K M++++ +L++ E D I+ D + + +I Sbjct: 503 VKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDVILKTAINS 562 Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 VE GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILF Sbjct: 563 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 622 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAF +P D+L E+QGR PV V+L SL+ DF ILT T +NL+ Q L+KTEGI Sbjct: 623 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGI 682 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+D+I+++A+ A ++N + +IG RRL T++E+++E+I++ K++VID E Sbjct: 683 DLHFTDDAIESIANAAHDMNVYIENIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEV 742 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + F + D+ +I+ Sbjct: 743 VKKSLEGFIKQFDLKKYII 761 >gi|15611532|ref|NP_223183.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori J99] gi|11133260|sp|Q9ZLW1|HSLU_HELPJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|4154993|gb|AAD06034.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] Length = 443 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++ +++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKERLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D ++V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|261838240|gb|ACX98006.1| heat shock protein, ATP-binding subunit [Helicobacter pylori 51] Length = 443 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 298/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 WNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSMLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D +++ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGESI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G+VF+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVVFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|237749804|ref|ZP_04580284.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC 43879] gi|229374554|gb|EEO24945.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter bilis ATCC 43879] Length = 445 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 196/449 (43%), Positives = 293/449 (65%), Gaps = 19/449 (4%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 +L +PREIVS LD YIIGQ+DAK+AVAIALRNR+RR QLP +++DE+ PKNIL++G Sbjct: 3 ELIITQTPREIVSYLDGYIIGQKDAKKAVAIALRNRYRRLQLPKEMQDEVTPKNILMIGS 62 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TGVGKT I+RR+A+L G PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++N+++ ++++ Sbjct: 63 TGVGKTEIARRMAKLMGLPFVKVEASKYTEVGFVGRDVESMVRDLVNASVNLLQNKQKED 122 Query: 122 VREQASINAEERILDALVGKTATSNTR----------EVFRKKLRDGEISDKEIDIEVAD 171 ++ RI L+ T E +++++ G + D +I IE+A Sbjct: 123 SADKIDDYILNRITQKLLPPLPAGVTEQKKQEYDISFEKMKERVKSGAMDDTKIMIEIAK 182 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDES-DRLID 229 I ++P I+ + E K + G K K +++++ EL+R E+ + ++D Sbjct: 183 QEEKIDE-NLPAE----IIKVQESLIKALNMKGDKIKKEITIKEA-KELLRPEAQNAVLD 236 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 D + D++++ E GI+F+DE DKI VA + S+EGVQRDLLP+VEGS V T+Y Sbjct: 237 SDMIKTDALKLAEQSGIIFIDEIDKIAVASKDSSKQDPSKEGVQRDLLPIVEGSVVQTRY 296 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G I TDHILFIA+GAFH S+P+DL+PE+QGRFP+RV L+ L++ ILT T++++I Q Sbjct: 297 GQIKTDHILFIAAGAFHFSKPSDLIPELQGRFPLRVELQVLDEEALYQILTQTKNSIIRQ 356 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L+ EGI L F + ++ AL+ ++ + N DIGARRL T +ERVLEDISF A D + Sbjct: 357 YEALLSVEGITLKFEDSALRALSRLSFHANEKTEDIGARRLHTTIERVLEDISFCAEDYK 416 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + VVI V + D D+ +IL Sbjct: 417 GQEVVITESIVEEKLKDLVENVDLARYIL 445 >gi|116494891|ref|YP_806625.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus casei ATCC 334] gi|116105041|gb|ABJ70183.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus casei ATCC 334] Length = 469 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 196/470 (41%), Positives = 295/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ DAKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDDAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFSKVRIRAE 125 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 126 KEANKRLVKILVPAIRKEKNTNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNKRL 185 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 186 SVAEQLEKGLLEDHEITVAVNDEKKGGGMGDMYG--QMGI-DLSDTIGALM---PKKKVE 239 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+I EN GI+F+DE DKI A + N VS Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIPSAENNGIIFIDEIDKIAAGNKHNSGEVS 299 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT++++D +A++A +N +IGAR Sbjct: 360 DLTEKDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVDRIAEIATQVNHDTDNIGAR 419 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469 >gi|15645143|ref|NP_207313.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori 26695] gi|11132784|sp|O25254|HSLU_HELPY RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|2313631|gb|AAD07584.1| heat shock protein (hslU) ORF1 [Helicobacter pylori 26695] Length = 443 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|208434438|ref|YP_002266104.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27] gi|238065799|sp|B5Z6N9|HSLU_HELPG RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|208432367|gb|ACI27238.1| heatshock protein, ATP-bindingsubunit [Helicobacter pylori G27] Length = 443 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 298/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ ++EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDNREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|149194254|ref|ZP_01871351.1| ATP-dependent protease ATP-binding subunit [Caminibacter mediatlanticus TB-2] gi|149135429|gb|EDM23908.1| ATP-dependent protease ATP-binding subunit [Caminibacter mediatlanticus TB-2] Length = 437 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 193/446 (43%), Positives = 294/446 (65%), Gaps = 22/446 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y++GQ+DAK+ +AIALRNR+RR QLP + +D+++PKNIL++GPTGV Sbjct: 1 MNMTPKEIVKYLDEYVVGQRDAKKTIAIALRNRYRRMQLPKEWQDDILPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE +IRDLV+ + N+VR + + Sbjct: 61 GKTEIARRMAKMMKVPFVKVEASKYTEVGFVGRDVESMIRDLVNNSYNLVRAEMEERSKS 120 Query: 125 QASINAEE---RILDALVGKTATS-------NTREVFRKKLRDGEISDKEIDIEVADTSS 174 Q R L + K A T E ++K++ GE+ +I IEV +T+ Sbjct: 121 QIEEEIINEITRKLIPPLPKNAPEEKLKDYEKTFEKMKEKVKKGEVDHLKITIEVDETNQ 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 N ++ E K++G + K+K ++V++ L + +++ I+ D Sbjct: 181 LDDNL------PPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKQAAEKFINKDE 234 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++++ EN GI+F+DE DKI A +GN S+EGVQRDLLP+VEGS+V+TKYG + Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA--TGNTRQDPSKEGVQRDLLPIVEGSTVNTKYGYV 291 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++ ILT + +LI QY++ Sbjct: 292 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQK 351 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++ EG+ L F E ++ +A A N DIGARRL TV+E+VLEDI+F+A + ++K Sbjct: 352 LLEVEGVNLVFEESALKEIAKYAFLANEKTEDIGARRLHTVVEKVLEDINFNAEEYKDKD 411 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 +ID YV+ + D ++ +IL Sbjct: 412 FIIDEGYVKSKLEDIVENEEISKYIL 437 >gi|160903347|ref|YP_001568928.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95] gi|189043914|sp|A9BID3|HSLU_PETMO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|160360991|gb|ABX32605.1| heat shock protein HslVU, ATPase subunit HslU [Petrotoga mobilis SJ95] Length = 469 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 207/465 (44%), Positives = 305/465 (65%), Gaps = 36/465 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+++V +LD YIIGQ++AK+ VAIALRNR RR L D+R +++PKNIL++G TGVGK Sbjct: 7 LTPKKVVEKLDNYIIGQKEAKKQVAIALRNRIRRLSLSEDVRKDVIPKNILMIGSTGVGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA +A APF+KVE T+FTE+GYVG+NVE ++R+LVD ++N+V++ +EV+++A Sbjct: 67 TEIARRLAEVANAPFVKVEATRFTEVGYVGKNVESMVRELVDSSVNMVKKEMMEEVKDKA 126 Query: 127 SINAEERILDALVGKTATSNT----------------------------------REVFR 152 EERI++ LV + RE Sbjct: 127 QRLVEERIVEVLVPSKKRAKAQPSFMDVMQLFNQNAEYSQNKDYDENEDENIRRRREELL 186 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 +KLR+GE+ D EI++EV + SS + P +GI E+F +M +KK+ RM + Sbjct: 187 EKLRNGELEDVEIEVEVEEQSSPMFAGLGPELEDMGI-QFGEMFQNLM-PKKKKRRRMKI 244 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L ES++LID D + ++ + EN GI+F+DE DKI ++ +G VSREGVQ Sbjct: 245 SEARKVLEPIESEKLIDQDKLIQEGVSRAENSGIIFIDEIDKITSKGVSSGPDVSREGVQ 304 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG++V TKYGSI+TD+ILFIA+GAF ++P+DL+PE+QGRFP+R L L K Sbjct: 305 RDLLPIVEGTTVMTKYGSISTDYILFIAAGAFSEAKPSDLIPELQGRFPIRAELSDLTKE 364 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT ++ ++ QY+ L++T+G+ ++FTED ++ +AD+A LN V +IGARRL TV Sbjct: 365 DFIRILTQPKNAILKQYQYLLQTDGVKIEFTEDGVERMADIAFELNEKVENIGARRLYTV 424 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E+VLE++SF A E + ID+ YV L +G + D+ +IL Sbjct: 425 VEKVLEEVSFEAPASGEWELKIDSNYVDLRLGKVYGDEDLREYIL 469 >gi|317181836|dbj|BAJ59620.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F57] Length = 443 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +T+ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSETI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|199599530|ref|ZP_03212918.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus HN001] gi|199589571|gb|EDY97689.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus HN001] Length = 469 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMTAGDDADAGGEVTDDIRNRRL 185 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D+EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALM---PKKKVE 239 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A D VS Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVS 299 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT+++++ +A++A +N +IGAR Sbjct: 360 DLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGAR 419 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469 >gi|154149128|ref|YP_001406619.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis ATCC BAA-381] gi|153805137|gb|ABS52144.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter hominis ATCC BAA-381] Length = 439 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 203/442 (45%), Positives = 302/442 (68%), Gaps = 17/442 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ++AK+ +AIALRNRWRR +L ++R+E+MPKNIL++G TGVGKT Sbjct: 3 TPKKIVEILDDYIIGQKNAKKTIAIALRNRWRRLKLDEEMRNEVMPKNILMIGSTGVGKT 62 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRL+++ G PF+KVE +K+TE+G+VGR+VE ++RDL ++N+V+ ++ RE+ Sbjct: 63 EIARRLSKMFGLPFVKVEASKYTEVGFVGRDVESMVRDLAAASVNLVKNEELEKNREKID 122 Query: 128 INAEERILDALVGK----------TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 E+RIL ++ A + + E R+K R+G I D I+IE+ ++S + S Sbjct: 123 EYIEKRILQKVLPPLPRGASDEKVEAYNKSYEKMREKFRNGLIDDLIIEIEIDESSLE-S 181 Query: 178 NFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 N ++P + N+ E F KV+G S +K K + ++ L + SD++++ D + + Sbjct: 182 NPNLPPEMA----NMQESFIKVIGISTKKTKKELKIKDAKVALKNEASDKVLNKDRIKAE 237 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 +I+ EN GI+F+DE DKI +G S+EGVQRDLLP+VEGSSV+TKYG+INTDH Sbjct: 238 AIRRAENEGIIFIDEIDKIAVSSGNSGRNDPSKEGVQRDLLPIVEGSSVNTKYGNINTDH 297 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+++ ILT +++LI QY L+ T Sbjct: 298 ILFIAAGAFHISKPSDLIPELQGRFPLRVELDSLDENALYEILTKPKNSLIKQYMALLAT 357 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L F+ED I ++A A N + DIGARRLQT+ME+VLED+SFSA + V ID Sbjct: 358 EGLKLKFSEDGIKSIAKFAALANEKMEDIGARRLQTIMEKVLEDLSFSADEHAGTDVKID 417 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 + V + + + D+ +IL Sbjct: 418 EKTVAQKLENIVLDEDLAKYIL 439 >gi|116492725|ref|YP_804460.1| ATP-dependent protease ATP-binding subunit HslU [Pediococcus pentosaceus ATCC 25745] gi|116102875|gb|ABJ68018.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Pediococcus pentosaceus ATCC 25745] Length = 470 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 203/473 (42%), Positives = 297/473 (62%), Gaps = 41/473 (8%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +N +P+EIV ELD+++IGQ+ AKRAVA+ALRNR+RR QL D+++++ PKN+L++GPT Sbjct: 1 MQYNLTPQEIVQELDQFVIGQKSAKRAVAVALRNRYRRLQLSGDMQEDITPKNLLMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A++I E+ +V Sbjct: 61 GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHIEEENSFKDV 120 Query: 123 REQASINAEERILDALVG-KTATSNTREV--------FRKKLRDGEISD----------- 162 R +AS NA+ RI++ LV T T N +L+ G D Sbjct: 121 RAEASKNADRRIVELLVPVSTDTQNKNNAADIQNMMNMLNQLQQGRTPDNLNQSSQKVPD 180 Query: 163 --KEIDIEVADT------SSDISNFDI--PGGASVGIL------NLSELFSKVMGSGRKK 206 KE + VA +D+ ++ P + G + +L E + +M KK Sbjct: 181 DIKEKRMNVASKLAKGLLENDMVTIEMDDPKQNNSGNMMNQMGIDLGESLNGLMP---KK 237 Query: 207 KIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 KI ++V++ L+R+ESD+L++ ++ +IQ EN GI+F+DE DKI + Sbjct: 238 KITRTVAVREAREILIREESDKLVNHGDLYHAAIQRAENTGIIFIDEIDKITGSGQNSSS 297 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 VSR+GVQRD+LP+VEGS VSTKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP+RV Sbjct: 298 DVSRQGVQRDILPIVEGSQVSTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFPIRV 357 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L L K DF ILT+ ++ L+ QY L+ T+ + + FT ++I+ +A +A +N +I Sbjct: 358 ELNDLTKEDFVKILTEPKNALVKQYIALIGTDNVKITFTIEAIERIAAIAEQVNHETENI 417 Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 GARRL T++E +LEDI F ++ V I +YV IG D+ FIL Sbjct: 418 GARRLHTILEHLLEDILFEGPSMEMGEVTITEKYVDDKIGSIAQNKDLSEFIL 470 >gi|258508411|ref|YP_003171162.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus rhamnosus GG] gi|258539624|ref|YP_003174123.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus rhamnosus Lc 705] gi|257148338|emb|CAR87311.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Lactobacillus rhamnosus GG] gi|257151300|emb|CAR90272.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Lactobacillus rhamnosus Lc 705] gi|259649725|dbj|BAI41887.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus GG] Length = 469 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/470 (41%), Positives = 296/470 (62%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125 Query: 128 INAEERILDALV------------------------GKTATS--------------NTRE 149 A +R++ LV GK N R Sbjct: 126 KEANKRLVKILVPAIRKEKNSNPMAEMMSMLQGMQNGKMPAGDDADAGGEVTDDIRNRRL 185 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + D+EI + V D D+ G +GI +LS+ +M KKK+ Sbjct: 186 SVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALMP---KKKVE 239 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A D VS Sbjct: 240 RTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTSGEVS 299 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+RV LK Sbjct: 300 REGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIRVELK 359 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L + DF ILT+ ++ LI QY L+ +G+ + FT+++++ +A++A +N +IGAR Sbjct: 360 DLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDNIGAR 419 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 420 RLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 469 >gi|302846515|ref|XP_002954794.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f. nagariensis] gi|300259977|gb|EFJ44200.1| hypothetical protein VOLCADRAFT_95623 [Volvox carteri f. nagariensis] Length = 581 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 210/470 (44%), Positives = 299/470 (63%), Gaps = 38/470 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDELMPKNILLVGPTGV 64 +P IV+ LD+YI+GQ AKRA+A+ALRNRWRRQ++ PA RDE+MPKNIL+VGPTG Sbjct: 91 GLTPAAIVAALDKYIVGQAAAKRALAVALRNRWRRQRVEPATFRDEIMPKNILMVGPTGC 150 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT ++RRLA+LA APF+K E TK+TE+GYVGR+VE+II+DLV+ A+ +VR+ +D + E Sbjct: 151 GKTEVARRLAKLADAPFVKGEATKYTELGYVGRDVEEIIKDLVEAALVLVRQRAKDRLAE 210 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA-----------DTS 173 +S AE IL ALVG+ A+S+T +FR+ + GE+ D ++I+ A S Sbjct: 211 HSSRRAEAIILRALVGQHASSDTLGMFREMYKRGELDDTHVEIDSALLDGSGSSGAGGGS 270 Query: 174 SDISNFDI-PGGASV--GILNLSELFSKVM--GSGRKKKIRM---------SVQKCYPEL 219 D PGG S + F + + G+G + +R+ V + L Sbjct: 271 GFGGQLDFGPGGVSCWKAVCATGPGFWRPLPGGAGGRLGVRLLFPSYLALCQVSEARSLL 330 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSREGVQRDLL 276 ES++L+ D V R++I+ E GIVF+DE DKIV SG G GVS EGVQRDLL Sbjct: 331 EEAESEKLLSSDQVTREAIRAAEQDGIVFIDEIDKIVDPSSGRVVTGGGVSSEGVQRDLL 390 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L E+QGR P+RV LK L DF Sbjct: 391 PIIEGSVVPTKHGNVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRVELKGLTAEDFYR 450 Query: 337 ILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 ILT+ ++N++ Q +EL+ TE + L FT+ +I A++ +A N + +IGARRL TV+ERV Sbjct: 451 ILTEPQNNMLRQQQELLATEAVQLVFTDGAIRAISTLAEQANRLLDNIGARRLHTVLERV 510 Query: 397 LEDISFSASD---------LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L DISF A + Q V+D + V + D + D+ ++L Sbjct: 511 LADISFGAPERVAEARREGRQTYEYVVDEQLVHRKLDDLLKKQDLSRYVL 560 >gi|210134717|ref|YP_002301156.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori P12] gi|238065798|sp|B6JL98|HSLU_HELP2 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|210132685|gb|ACJ07676.1| heat shock protein ATP-binding subunit [Helicobacter pylori P12] Length = 443 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|325115573|emb|CBZ51128.1| putative ATP-dependent heat shock protein [Neospora caninum Liverpool] Length = 527 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/459 (43%), Positives = 292/459 (63%), Gaps = 38/459 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVG 65 P+E+V L++YIIGQ +AKRAVA+ALR RWRR+ + + LR+++ PKNILL+GPTGVG Sbjct: 79 LCPQEMVEYLNKYIIGQAEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVG 138 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ++RRLA+ APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+ R ++ +R Sbjct: 139 KTEVARRLAKRIDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEAMRPA 198 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE----------------- 168 A AE +IL+AL+GK ++ R LR G + + + ++ Sbjct: 199 AEHRAETKILEALLGKMPAEEHQQWLRH-LRCGALDSRRVHVDFPARPNVGAASGGPAFD 257 Query: 169 -------VADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMR 221 VAD S I + D P A F+ G + ++V++ +LM+ Sbjct: 258 DGGRDSIVADLESIIRDIDRPRPA---------FFATRRGPRGSEARNLTVKEAREKLMQ 308 Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLV 279 E D +I D V + +++ VE GIVF+DE DKI ++ SG S EGVQRDLLPL+ Sbjct: 309 AELDAMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGGRSGYNPDASDEGVQRDLLPLI 368 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG++VST+YG + TD+ILFIASGAFH RP++LL E+QGR P+RV L SL +SD R ILT Sbjct: 369 EGTTVSTRYGDVKTDYILFIASGAFHCVRPSELLAELQGRLPIRVTLTSLTESDLRDILT 428 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 T++NLI Q L++TE + L FTE++++ +A VA +N++V +IGARRL T++E+++ED Sbjct: 429 KTQNNLIEQNTALLRTENVELHFTEEAVNEIARVACEVNASVENIGARRLHTIIEKIMED 488 Query: 400 ISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 I+++A + T V ID E VR + ++ D F+L Sbjct: 489 INYAAPSMAPGTRVEIDLERVRSSVSSLLTKMDYTRFVL 527 >gi|308184323|ref|YP_003928456.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori SJM180] gi|308060243|gb|ADO02139.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori SJM180] Length = 443 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + + Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|317013933|gb|ADU81369.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori Gambia94/24] Length = 443 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + + Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRI 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|317179117|dbj|BAJ56905.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F30] Length = 443 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 189/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +++ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP++EGS V+TKYGSI Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIIEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|307637194|gb|ADN79644.1| ATP-dependent hsl protease [Helicobacter pylori 908] gi|325995783|gb|ADZ51188.1| ATP-dependent hsl protease ATP-binding subunit [Helicobacter pylori 2018] gi|325997379|gb|ADZ49587.1| ATP-dependent protease ATP binding subunit [Helicobacter pylori 2017] Length = 443 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKYLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + + Sbjct: 359 LKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQCI 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|109947437|ref|YP_664665.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter acinonychis str. Sheeba] gi|123066225|sp|Q17XG0|HSLU_HELAH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|109714658|emb|CAJ99666.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter acinonychis str. Sheeba] Length = 443 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YII Q++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVTYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVVEKIAKKLLPPLPSGVSEEKKQEYANSLLRMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI ++ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAISPKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEVAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|298736227|ref|YP_003728753.1| heat shock protein HslU [Helicobacter pylori B8] gi|298355417|emb|CBI66289.1| Heat shock protein HslU [Helicobacter pylori B8] Length = 443 Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F + +I LA ++ N N DIGARRL T +E+VLEDISF A D ++V Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|261839652|gb|ACX99417.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52] Length = 440 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+ +AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 1 MNMTPREIVAYLDEYIIGQKEAKKFIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 61 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 121 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +++ Sbjct: 181 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 235 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 236 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 295 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 296 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEKIMYMILTQTKTSIIKQYQAL 355 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 356 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 415 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 416 TITKELVQSKLEDLVADENLVKYIL 440 >gi|224373289|ref|YP_002607661.1| ATP-dependent protease ATP-binding subunit HslU [Nautilia profundicola AmH] gi|223588434|gb|ACM92170.1| heat shock protein HslVU, ATPase subunit HslU [Nautilia profundicola AmH] Length = 437 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 192/446 (43%), Positives = 295/446 (66%), Gaps = 22/446 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 + +P++IV+ LD YI+GQ+DAK+ +AIALRNR RR QLP + +D++MPKNIL++GPTGV Sbjct: 1 MSMTPKQIVAYLDEYIVGQKDAKKTIAIALRNRHRRMQLPKEWQDDIMPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE +IRDLV+ ++N+VR + +E Sbjct: 61 GKTEIARRMAKMMKLPFVKVEASKYTEVGFVGRDVESMIRDLVNNSMNLVRAEMEENSKE 120 Query: 125 QASINAEERILDALVG---KTATSNTR-------EVFRKKLRDGEISDKEIDIEVADTSS 174 Q N E I L+ K A + E +++++ GE+ +I IE+ + Sbjct: 121 QIEENVIEEITKKLLPPLPKNAPEQKQIEYQHSFEKMKERVKKGEVDHLKITIEIEELPE 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 N ++ E K++G + K+K ++V++ L ++ ++++I + Sbjct: 181 GDDNL------PPEMIKAQESIVKIIGIFNKNKEKKEVTVKEAKELLRKEAAEKVISKED 234 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++++ EN GI+F+DE DKI A +GN S+EGVQRDLLP+VEGS+V+TKYG + Sbjct: 235 LKKEALKRAEN-GIIFIDEIDKIAA--TGNQRQDPSKEGVQRDLLPIVEGSTVNTKYGYV 291 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 NTDHILFIA+GAFHVS+P+DL+PE+QGRFP+RV L+SL++ ILT + +LI QY++ Sbjct: 292 NTDHILFIAAGAFHVSKPSDLIPELQGRFPLRVELQSLDEEALYQILTRPKHSLIKQYQK 351 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L++ E + L FTE+++ +A A N DIGARRL TV+E+VLEDI+F A + K Sbjct: 352 LLEVEQVNLIFTEEALREIARYAFLANEKTEDIGARRLHTVIEKVLEDINFEADEYAGKD 411 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 VID YV+ + D ++ +IL Sbjct: 412 FVIDEAYVKSKLDDIVESEEITKYIL 437 >gi|313884956|ref|ZP_07818708.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619647|gb|EFR31084.1| ATP-dependent protease HslVU, ATPase subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 466 Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 198/470 (42%), Positives = 302/470 (64%), Gaps = 46/470 (9%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR +VSELD+YIIGQ AKR+VA+ALRNR RR +L ++R E+ PKNIL++GPTGVGK Sbjct: 4 LTPRYVVSELDKYIIGQDQAKRSVAVALRNRLRRLRLDDEMRQEVKPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA +A APF+KVE TK+TE+GYVGR+VE ++RDLV+ AI I+++ ++V++QA Sbjct: 64 TEIARRLASIAQAPFVKVEATKYTEVGYVGRDVESMVRDLVENAIRIIKDQEFEKVQDQA 123 Query: 127 SINAEERILDAL-----VGKTATSN--------------------------------TRE 149 A ERI AL V K N +R Sbjct: 124 ENLAIERIAKALRPGKKVEKKTNQNGNFDFMEMMKNFAPVGQEDSEDDEVVTEEIASSRR 183 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 R ++R+G++ + E+ I++ + ++N + A ++ + E S + KKKI Sbjct: 184 AIRAQIREGKLDNHEVTIKMQEKKLQMTNLN---PAMEQMMEMQESLSALQP---KKKIE 237 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 ++V++ L +E+++L++MD +H+ ++ + ++ GI+F+DE DKI ++ +G VS Sbjct: 238 RTVTVKEAIKLLSEEEAEKLVNMDNIHQKALSLAQDSGIIFIDEMDKIATKNQNSG-EVS 296 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 R+GVQRD+LP+VEG+ + TKYG I+TDHILF+ SGAFH+++P+DL+PE+QGRFP+RV+L Sbjct: 297 RQGVQRDILPIVEGTQIQTKYGIISTDHILFVGSGAFHLAKPSDLIPELQGRFPIRVNLD 356 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L+ DF IL ++ LI QY+ ++ TEG+ + FT+D+I+ +A AV LN T +IGAR Sbjct: 357 DLSHDDFVKILVQPKNALIKQYQAMLATEGVQIHFTDDAIEKMAYYAVELNETTDNIGAR 416 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E VLE++ F A+D + I A YV + D+ H+IL Sbjct: 417 RLHTIIETVLEELLFEAADTPMGEIEITANYVSERLEKITENKDLSHYIL 466 >gi|317177646|dbj|BAJ55435.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F16] Length = 443 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKHAESSGVIFIDEIDKIAVNSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|319892269|ref|YP_004149144.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus pseudintermedius HKU10-03] gi|317161965|gb|ADV05508.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus pseudintermedius HKU10-03] gi|323464634|gb|ADX76787.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus pseudintermedius ED99] Length = 469 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 300/465 (64%), Gaps = 37/465 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+P++IV L+ YI+GQ++AK+ VAIALRNR+RR L +++ E+ PKNIL++GPTGVGK Sbjct: 8 FTPKDIVDRLNEYIVGQEEAKKKVAIALRNRYRRSLLDDEVKQEIAPKNILMMGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPF+KVE TKFTE+GYVGR+VE ++RDLVDVA+ +V++ ++ V E A Sbjct: 68 TEIARRMAKIVGAPFLKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDQKKANVVEAA 127 Query: 127 SINAEERILDALV---GKTATSNTREVFRK-------------------------KLRDG 158 + A ++++ LV K A+ NT K + Sbjct: 128 TQKANDKLVKLLVPSLKKKASQNTNNPLESLFGGAIPNFGQHNEEDEEEPPTEDIKTKRS 187 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP- 217 EI + ++ ++ + + PG + N +E ++M KK V+K P Sbjct: 188 EIRVQLLNGQLEEEKVKVKVEQDPGALGMLGTNQNEQMQEMMNQLMPKK---KVEKELPV 244 Query: 218 ----ELMRDE-SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 +++ D+ +D +ID +T +++++ + E GI+F+DE DK+ + +G VSR+GVQ Sbjct: 245 KTARKILVDQFADEMIDHETANQEALDLAEQMGIIFIDEIDKVATSNQNSGQDVSRQGVQ 304 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP++EGS V TKYG+++T+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L+ L+ Sbjct: 305 RDILPILEGSVVKTKYGTVSTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELQDLSVD 364 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL + + +LI QY+ L+KTE ++++FT+++I LA++A ++N +IGARRL T+ Sbjct: 365 DFVRILKEPKLSLIKQYEMLLKTEEVVVNFTDEAIYRLAEMAYHVNQETDNIGARRLHTI 424 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+SF A ++ V I +YV + + D+ FIL Sbjct: 425 LEKMLEDLSFEAPNMPHAQVDITPQYVDDKLKTISTNKDLSEFIL 469 >gi|317012332|gb|ADU82940.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori Lithuania75] Length = 443 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGVRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKNSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F + +I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|108562915|ref|YP_627231.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori HPAG1] gi|122980524|sp|Q1CU15|HSLU_HELPH RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|107836688|gb|ABF84557.1| heat shock protein, ATP-binding subunit [Helicobacter pylori HPAG1] Length = 443 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 297/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVVEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 ++ EG+ + F +D+I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYLGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|320101720|ref|YP_004177311.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida ATCC 43644] gi|319749002|gb|ADV60762.1| heat shock protein HslVU, ATPase subunit HslU [Isosphaera pallida ATCC 43644] Length = 541 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 206/494 (41%), Positives = 304/494 (61%), Gaps = 63/494 (12%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR IV ELDR I+GQ AKRAVA+ALR+RWRR++LP + R + PKNIL++GPTGVG Sbjct: 49 DLTPRRIVEELDRDIVGQDRAKRAVALALRDRWRRRRLPEETRRWITPKNILMIGPTGVG 108 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L GAPF+KVE TK+TE+GY+GR+VE ++RDLV+ AI++V+E R V Q Sbjct: 109 KTEIARRLAQLVGAPFVKVEATKYTEVGYIGRDVESMVRDLVEAAISLVKERERKRVASQ 168 Query: 126 ASINAEERILDALVGKTATSN--------------------------------------- 146 A AEER++D L+ +A+S+ Sbjct: 169 AQARAEERLIDLLLPGSASSSATGWGGGSPRRPPAAPPFVSPFGFPFGTSAPAASDSDAA 228 Query: 147 --------------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192 +R+ R +LR+G+ E+++ + ++ + GA + L Sbjct: 229 TDSEDAAARERRQRSRDKLRAQLREGKADHLEVELVLPGRAAPPVSIIGAAGAEQMEMEL 288 Query: 193 SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252 +F ++M + + RM+V + P L+ E + L+D +T+ R +I++ E GI+F+DE Sbjct: 289 QSMFERMMPRPARPQ-RMTVAEARPILIEREVEALLDPETIQRSAIRLAEESGIIFIDEI 347 Query: 253 DKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308 DK+ + G G VSR GVQRDLLP+VEG++V+TKYG + TD++LFIA+GAFH +R Sbjct: 348 DKVAGEEGAGGGGRGPDVSRGGVQRDLLPIVEGTTVTTKYGPVKTDYVLFIAAGAFHKAR 407 Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 P+DL+PE+QGRFP+RV L L + DF IL + +L+ QY+ L+ EG+ L FT D+ID Sbjct: 408 PSDLMPELQGRFPIRVELDDLTRDDFARILREPRVSLLNQYQALLAVEGVQLQFTPDAID 467 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-----VVIDAEYVRLHI 423 A+A++A +N + +IGARRL T++ERV+E+ISF+A D +T V IDA VR + Sbjct: 468 AMAEIAYQVNRSTQNIGARRLHTILERVVEEISFNAPDQVAQTEDPLVVTIDAAEVRRKL 527 Query: 424 GDFPSETDMYHFIL 437 + D+ FIL Sbjct: 528 DPLVRDDDLSRFIL 541 >gi|315586803|gb|ADU41184.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter pylori 35A] Length = 443 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV----RESRRD 120 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V +E +D Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 121 EVREQASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 ++ E ++ L L K +N+ ++++ GE+ ++EI+IEV S Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +++ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|183179650|ref|ZP_02957861.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3] gi|183013061|gb|EDT88361.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3] Length = 389 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 193/391 (49%), Positives = 269/391 (68%), Gaps = 13/391 (3%) Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 ++GPTGVGKT I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + Sbjct: 1 MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQ 60 Query: 118 RRDEVREQASINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEID 166 ++V+ +A AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+ Sbjct: 61 AMEKVKFRAEELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIE 120 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 I VA + PG + L LF + G KKK +M ++ L+ +E+ + Sbjct: 121 INVAVPQMGVEIMAPPGMEEM-TNQLQGLFQNLAGD-TKKKRKMKIKDALKALVEEEAAK 178 Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 L++ + + +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VST Sbjct: 179 LVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGSTVST 238 Query: 287 KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLI 346 K+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L Sbjct: 239 KHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLT 298 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY LMKTE + + FTED I +AD A +N T +IGARRL TV+ER++++ISF A++ Sbjct: 299 EQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATE 358 Query: 407 LQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + VIDA YV+ +G+ + D+ FIL Sbjct: 359 KAGQAFVIDAAYVKARLGELVEDEDLSRFIL 389 >gi|331701473|ref|YP_004398432.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus buchneri NRRL B-30929] gi|329128816|gb|AEB73369.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus buchneri NRRL B-30929] Length = 470 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 196/470 (41%), Positives = 288/470 (61%), Gaps = 46/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIVS LD+YI+GQ +AK+AVA+ALRNR+RR QL D++DE+ PKN+L++GPTGVGKT Sbjct: 7 TPKEIVSVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKDMQDEISPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVG +VE ++RDLV+ AI + R + +V +A Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGGDVESMVRDLVENAIQLERADQYKQVHVEAE 126 Query: 128 INAEERILDALV------------------------GKTATSNT-------------REV 150 A R++ L G+ + N R Sbjct: 127 KQANNRLVKLLAPAKKKENRQNEMQNLMNMFTQMQNGQMPSENQDDQEEVTDDIREKRMS 186 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS-ELFSKVMGSGRKKKIR 209 +KL+ G + + +++IE+ D S P G S + + +L + G KKKI+ Sbjct: 187 IAEKLKAGLLENDQVEIEMDDPSQQ------PAGQSTMMNQMGIDLNDTLAGLMPKKKIK 240 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 + V + L R S+ LI+ ++ ++I EN GI+F+DE DKI S N VS Sbjct: 241 RTVPVSEAREILTRQASEELINKADLYHNAIVRAENTGIIFIDEIDKIAPGKSQNSGEVS 300 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS V+TKYG++NTDH+LFI SGAF ++P+DL+PE+QGRFP+RV L Sbjct: 301 REGVQRDILPIVEGSQVNTKYGTVNTDHMLFIGSGAFAENKPSDLIPELQGRFPIRVELN 360 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L K DF ILT+ ++L QY L+ T+ I + FT ++I+ +A++A ++N +IGAR Sbjct: 361 DLTKEDFVRILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATDVNHNTDNIGAR 420 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LEDI + D+Q + I +YV +G D+ +IL Sbjct: 421 RLHTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAQNKDLSRYIL 470 >gi|308061843|gb|ADO03731.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori Cuz20] Length = 443 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E K + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIVFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ +GD ++ ++ +IL Sbjct: 419 TITKELVQSKLGDLVADENLVKYIL 443 >gi|322378787|ref|ZP_08053216.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1] gi|322380636|ref|ZP_08054788.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5] gi|321146958|gb|EFX41706.1| ATP-dependent protease, ATP-binding subunit [Helicobacter suis HS5] gi|321148817|gb|EFX43288.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1] Length = 446 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 200/447 (44%), Positives = 288/447 (64%), Gaps = 21/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD YIIGQQDAK+ +AIALRNRWRR QL +L++E+MPKNIL++G TGV Sbjct: 7 LNLTPQEIVRYLDDYIIGQQDAKKMIAIALRNRWRRLQLSKELQEEVMPKNILMIGSTGV 66 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV +I++V ++ + Sbjct: 67 GKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVVASIHLVENEEKE--KN 124 Query: 125 QASIN--AEERILDAL-------VGKTATSNTREVFRK---KLRDGEISDKEIDIEVADT 172 QA I ERI L VGK F K K+R + D++I IE+ D Sbjct: 125 QAKIEDLIIERITKKLLPPLPSGVGKDKQQEYALNFEKTKQKVRSHVLDDQKIQIEL-DK 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-MSVQKCYPELMRDESDRLIDMD 231 +F++P I+ + E +K++ G +K + M++++ L D S ++DM+ Sbjct: 184 RGVEGDFNMPPE----IIKVQESLTKILNKGGEKVSKEMTIKEAKEALRHDVSQAILDME 239 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 V R+ +Q G++F+DE DKI V G S+EGVQRDLLP+VEGS++ TKYG Sbjct: 240 QVQREGVQRAAQCGVIFIDEIDKIAVGSKEGRTQDPSKEGVQRDLLPIVEGSTIQTKYGP 299 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL++ ILT +S+LI QY+ Sbjct: 300 IATDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLSEEIMYEILTRPKSSLIKQYQ 359 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L++ E + L F +++ LA + N DIGARRL T +E+VLEDISF+A+ + Sbjct: 360 ALLEVENVDLAFEPEALRELARFSYLANQKTEDIGARRLHTTLEKVLEDISFNATAYAGQ 419 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 VV+ + V + D + D+ FIL Sbjct: 420 KVVVSKKDVSQTLQDLVEDVDLARFIL 446 >gi|315924466|ref|ZP_07920688.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pseudoramibacter alactolyticus ATCC 23263] gi|315622345|gb|EFV02304.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pseudoramibacter alactolyticus ATCC 23263] Length = 477 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/464 (44%), Positives = 285/464 (61%), Gaps = 63/464 (13%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR IV EL+RYIIGQ+ AK+AVA++LRNR+RR LP +R+E+ PKNI+++GPTGVGK Sbjct: 8 LTPRMIVDELNRYIIGQEKAKKAVAVSLRNRYRRSLLPDAIREEITPKNIIMMGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A+L APFIKVE TKFTE+GYVGR+VE +IRDLV +I +V++ + D+V+ QA Sbjct: 68 TEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMIRDLVTTSIRMVKQEKMDDVKTQA 127 Query: 127 SINAEERILDALVGKTATSNTRE------------------------------------- 149 A ILDALV + + +E Sbjct: 128 EEKANRIILDALVPRRKKAQKQEKLINPFDLLNQNKSPAAVEDAQPELSPEEKHQIETKR 187 Query: 150 -VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL---------NLSELFSKV 199 ++L DG++ D+ ID+ + D G S+GI+ + +F + Sbjct: 188 SAIAEELADGKLEDEMIDVMLDDD----------GAKSIGIMAGMSEDMSIEIGNIFEGL 237 Query: 200 MGSGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 G +KKK R M V + + E+ ++IDMD V ++ E GI+F+DE DKI+ Sbjct: 238 TGGNKKKKKRTMKVSEARKVIANQEAQKMIDMDEVQEIGVREAEQNGIIFIDEIDKII-- 295 Query: 259 DSGN---GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315 DSG+ G VSREGVQRD+LP+VEGS+V+TKYG + TD ILFI +GAF+V+ D++PE Sbjct: 296 DSGSHRGGPDVSREGVQRDILPIVEGSTVNTKYGPVKTDFILFIGAGAFNVANIEDMIPE 355 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 +QGRFPV V L+SL + +F ILT E+ ++ QY L++TEGI L F E+++ A+A +A Sbjct: 356 LQGRFPVSVQLESLTEENFVEILTKPENAIVKQYAYLLQTEGIELQFEEEALKAIASIAY 415 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 N +IGARRL TV E +LE+ISF ASD E VID YV Sbjct: 416 AKNEEDENIGARRLHTVFEELLEEISFYASDYDEDVFVIDKNYV 459 >gi|221054412|ref|XP_002258345.1| atp-dependent heat shock protein [Plasmodium knowlesi strain H] gi|193808414|emb|CAQ39117.1| atp-dependent heat shock protein, putative [Plasmodium knowlesi strain H] Length = 836 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 193/437 (44%), Positives = 288/437 (65%), Gaps = 9/437 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR Q+ D+R +++PKNIL++GPTGVGKT Sbjct: 401 PHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMRKDIIPKNILMIGPTGVGKTE 460 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + E+REQA Sbjct: 461 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQE 520 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDIPGGAS 186 E IL +L+G + ++RK L+DG + DK + I++ + ++ SN + Sbjct: 521 TVENIILYSLLGNIKEE-EKSIWRKYLKDGSLDDKVVSIDIPNYVNNNMFSNDSVENAVK 579 Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 + N + S K++ K K M++++ +L++ E D ++ D + + +I VE Sbjct: 580 EALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVE 639 Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILFIA Sbjct: 640 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 699 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAF +P D+L E+QGR PV V+L SL +DF ILT T +NL+ Q L+KTEGI L Sbjct: 700 SGAFQRVKPNDMLNELQGRLPVHVNLSSLTINDFIEILTKTHNNLLQQNIALLKTEGIDL 759 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT+D+I+ +A+ A ++N V +IG RRL T++E+++EDI++ + KT+VID E V+ Sbjct: 760 QFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDKEKVK 819 Query: 421 LHIGDFPSETDMYHFIL 437 + F + D+ +I+ Sbjct: 820 KSLEGFIKQFDLKKYII 836 >gi|330685673|gb|EGG97314.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus epidermidis VCU121] Length = 467 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 186/460 (40%), Positives = 297/460 (64%), Gaps = 29/460 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT--REVFRK--------------------KLRDGEI 160 + A ++++ LV K + N +F K + EI Sbjct: 128 TQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSEI 187 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR--MSVQKCYP 217 + + ++ + I PG + N ++ +M KKK+ + V+ Sbjct: 188 KKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKKKVEREVPVKTARK 247 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L D +D LID +T +++++++ E GI+F+DE DK+ + +G VS++GVQRD+LP Sbjct: 248 ILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSKQGVQRDILP 307 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 ++EGS + TKYG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ DF I Sbjct: 308 ILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRI 367 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L + + +L+ QY+ L++TE + ++F++++I LA++A +N +IGARRL T++E++L Sbjct: 368 LKEPKLSLVKQYEALLQTEEVTVNFSDEAITRLAEIAYQVNQDTDNIGARRLHTILEKML 427 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SF A ++ V I +YV + + D+ FIL Sbjct: 428 EDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|242309065|ref|ZP_04808220.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum MIT 98-5489] gi|239524489|gb|EEQ64355.1| ATP-dependent protease ATP-binding subunit [Helicobacter pullorum MIT 98-5489] Length = 440 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 190/446 (42%), Positives = 297/446 (66%), Gaps = 21/446 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV+ LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK Sbjct: 1 MTPKEIVAYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV +IN+V+E R + R A Sbjct: 61 TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVIASINLVKEEHRQKNR--A 118 Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172 I E+ +LD +V K N E R+K+++GE+ +I+IE+ Sbjct: 119 GI--EKYVLDKIVEKLIPPLPKGASEQKIEEYENAAEKMRQKVKNGEMDHLKIEIEIPKR 176 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + +I + ++P + ++ +F KK++ ++++ L + S+ L+D+++ Sbjct: 177 TFEIEDGNMPAEFAKVQETIARVFIASPKDNPKKEV--TIKEAKEILKVEASEALLDLES 234 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + ++ ++ EN GI+F+DE DK+ + G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 235 IKQEGLKRAENSGIIFIDEIDKVAVSSNSQGRQDPSKEGVQRDLLPIVEGSIVNTKYGSI 294 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++ ILT T+++++ QY+ Sbjct: 295 KTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQYEA 354 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 LM E + L F++++I ALA + N DIGARRL TV+E+V+E+ISF A + + + Sbjct: 355 LMAVEEVSLKFSDEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKGQE 414 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V I V+ + +++D+ +IL Sbjct: 415 VEITESLVKEKLETLVADSDVARYIL 440 >gi|301299323|ref|ZP_07205608.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853063|gb|EFK80662.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 467 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV+ELD+Y+IGQ AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE + RDLV+VA + + +VR QA+ Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126 Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157 A +R++ +V K N + LRD Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186 Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 G + + E+ I+V D S+ +N G +GI +LS L S M +K + M+V Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+++ES++L++ + +I+ EN GI+F+DE DKI ++ N VSREGVQ Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+ Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY ++ T+ I + FT ++I +A+VA LN +IGARRL T+ Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F D+Q + I YV IG + D+ +IL Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLNQYIL 467 >gi|227890939|ref|ZP_04008744.1| ATP-dependent protease ATP-binding subunit [Lactobacillus salivarius ATCC 11741] gi|227867348|gb|EEJ74769.1| ATP-dependent protease ATP-binding subunit [Lactobacillus salivarius ATCC 11741] Length = 467 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV+ELD+Y+IGQ AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE + RDLV+VA + + +VR QA+ Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126 Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157 A +R++ +V K N + LRD Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186 Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 G + + E+ I+V D S+ +N G +GI +LS L S M +K + M+V Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+++ES++L++ + +I+ EN GI+F+DE DKI ++ N VSREGVQ Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+ Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY ++ T+ I + FT ++I +A+VA LN +IGARRL T+ Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F D+Q + I YV IG + D+ +IL Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467 >gi|332673693|gb|AEE70510.1| ATP-dependent hsl protease ATP-binding subunit HslU [Helicobacter pylori 83] Length = 443 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 188/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+ ++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIVKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +++ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFETEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|288573038|ref|ZP_06391395.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568779|gb|EFC90336.1| heat shock protein HslVU, ATPase subunit HslU [Dethiosulfovibrio peptidovorans DSM 11002] Length = 474 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 206/468 (44%), Positives = 302/468 (64%), Gaps = 43/468 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P IVS LDRYI+GQ AKRAVAIALRNR+RR+ L +L E+ PKNIL+VGPTGVGKT Sbjct: 11 PSAIVSYLDRYIVGQDKAKRAVAIALRNRFRRRMLDPELAKEVAPKNILMVGPTGVGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRLA L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI +V++ ++V+ A Sbjct: 71 IARRLAELVNAPFVKVEATKFTEVGYVGRDVESMVRDLVETAIQMVKKRMLEDVQTPAME 130 Query: 129 NAEERILDALV-GKTATSNTREVF------------------------------RKKLRD 157 A +R++D LV GK S F R KL D Sbjct: 131 RARDRVVDFLVPGKKTRSGGMPTFMSVIKGMSGEDDSQEEEQETPEEDRMRQSTRSKLLD 190 Query: 158 ----GEISDKEIDIEVADTSSDISNFDIPGGASV---GILNLSELFSKVMGSGRKKKIRM 210 G++ D+E++IE+ ++ I GGA + GI NL E+ +M +KK+ M Sbjct: 191 LLAQGKLDDREVEIEIQESPQ--MGIPIMGGAGMDEMGI-NLGEMLGGLM-PKKKKRKTM 246 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSRE 269 V+ L +E+++LID++ R ++ + GI+F+DE DKIV++ SG G VSR+ Sbjct: 247 KVKDALRVLQNEEAEKLIDVEAATRMGMEKAQEEGIIFVDEIDKIVSKGSGGGGHDVSRD 306 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRDLLP+VEG +V TK+G ++TDH+LFIA+GAFH S+P+DL+PE+QGRFP+RV L++L Sbjct: 307 GVQRDLLPVVEGCTVQTKHGQVSTDHVLFIAAGAFHQSKPSDLVPELQGRFPIRVELEAL 366 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 +K+ ILT+ + +LI QY+ L+KTE + L F ++ + +A +A +N + +IGARRL Sbjct: 367 DKAQLARILTEPKHSLIEQYEALLKTEEVYLVFEDEGVREIASLAERMNLEMENIGARRL 426 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDISF A + + +T +D +V+ + ++D+ ++L Sbjct: 427 HTMVEQLLEDISFEAPERKGETFTVDGSFVKDRLEPLVKDSDVRRYLL 474 >gi|313680128|ref|YP_004057867.1| heat shock protein hslvu, atpase subunit hslu [Oceanithermus profundus DSM 14977] gi|313152843|gb|ADR36694.1| heat shock protein HslVU, ATPase subunit HslU [Oceanithermus profundus DSM 14977] Length = 419 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 193/434 (44%), Positives = 277/434 (63%), Gaps = 19/434 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+ELD+Y+IGQQ+AK+AVA+ALRNR+RRQ+LP +LR E+ PKNIL++GPTGVG Sbjct: 3 ELTPREIVAELDKYVIGQQEAKKAVAVALRNRYRRQKLPPELRREVSPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL+GAPF+KVE TKFTE+GYVGR+V+ I+RDL +VA +V + ++V Sbjct: 63 KTEIARRLARLSGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMREKTEQV--- 119 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRD--GEISDKEIDIEVADTSSDISNFDIPG 183 A+ + A+S ++ D + D E + + G Sbjct: 120 ----------AAVAARLASSQIAQMLNVPHEDVSAGLYDHEYVEVEVPEEPKLPFMGMLG 169 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G + L ++ S ++ R + RM V + L E++RL+D + V +++++ + Sbjct: 170 GMEGQMQGLQDMLSGLLPK-RPVRKRMRVVEAREVLKNQEAERLVDKEEVSQEAVRRAQE 228 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GIVFLDE DKI + G VS EGVQRDLLP+VEG+ V+T+ G I+T+H+LFI +GA Sbjct: 229 DGIVFLDEIDKIAGSSAVQGPDVSGEGVQRDLLPIVEGTVVNTRLGPISTEHVLFIGAGA 288 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 F+V++P+DL+PE+QGRFP+RV L L DF IL TE++LI QY EL+ T+G L F Sbjct: 289 FNVAKPSDLIPELQGRFPIRVELAELTAEDFERILRHTENSLIKQYTELLATDGTELVFA 348 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +++I A+AD A N + DIGARRL TV+E +LE++SF ++ V I EYV + Sbjct: 349 DEAIRAVADFAYRANRELEDIGARRLATVLEYLLEEVSFQ---VELGRVEITKEYVEERL 405 Query: 424 GDFPSETDMYHFIL 437 D+ +IL Sbjct: 406 ASVLESEDLSRYIL 419 >gi|224534246|ref|ZP_03674824.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii A14S] gi|224514348|gb|EEF84664.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia spielmanii A14S] Length = 448 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 193/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+ +E + VRE A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMAKEEMYNTVREDALV 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ DF+ IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDFKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A+ N+N ++GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAIDRIAEFTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|111115120|ref|YP_709738.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia afzelii PKo] gi|216263956|ref|ZP_03435950.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii ACA-1] gi|110890394|gb|ABH01562.1| heat shock protein [Borrelia afzelii PKo] gi|215980000|gb|EEC20822.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia afzelii ACA-1] Length = 448 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 194/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VRE A I Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|217032969|ref|ZP_03438442.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128] gi|216945298|gb|EEC23973.1| hypothetical protein HPB128_141g2 [Helicobacter pylori B128] Length = 438 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 189/443 (42%), Positives = 296/443 (66%), Gaps = 17/443 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGVGK Sbjct: 1 MTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V +++++++ Sbjct: 61 TEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKI 120 Query: 127 SINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 E+I L+ K +N+ ++++ GE+ +EI+IEV S +I Sbjct: 121 EEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEI 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 181 DS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKM 235 Query: 236 DSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI T+ Sbjct: 236 EGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTE 295 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L+K Sbjct: 296 HILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQALLK 355 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 EG+ + F + +I LA ++ N N DIGARRL T +E+VLEDISF A D ++V I Sbjct: 356 VEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQSVTI 415 Query: 415 DAEYVRLHIGDFPSETDMYHFIL 437 E V+ + D ++ ++ +IL Sbjct: 416 TKELVQSKLEDLVADENLVKYIL 438 >gi|270290227|ref|ZP_06196452.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus acidilactici 7_4] gi|304384959|ref|ZP_07367305.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus acidilactici DSM 20284] gi|270281008|gb|EFA26841.1| heat shock protein HslVU, ATPase subunit HslU [Pediococcus acidilactici 7_4] gi|304329153|gb|EFL96373.1| ATP-dependent hsl protease ATP-binding subunit HslU [Pediococcus acidilactici DSM 20284] Length = 470 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 201/476 (42%), Positives = 300/476 (63%), Gaps = 48/476 (10%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L N +P+EIV++LD ++IGQ+ AKRAVA+ALRNR+RR QL AD+++++ PKN+L++GPT Sbjct: 2 LKENLTPQEIVNQLDEFVIGQKSAKRAVAVALRNRYRRLQLSADMQEDITPKNLLMIGPT 61 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+++ E +V Sbjct: 62 GVGKTEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAVHLEEERAFKDV 121 Query: 123 REQASINAEERILDALV--------------------------GKTAT------------ 144 R +A+ NA+ RI++ LV GKT T Sbjct: 122 RMEAAKNADHRIVELLVPVPEDPKQNSAVDFQNMMNMFTQMQQGKTPTDFQPSGQNVPDD 181 Query: 145 -SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG 203 R KL G + ++ + IE+ D + +N + +GI +L+E S ++ Sbjct: 182 IKEKRMDTASKLAKGLLENEMVTIEMDDPKQNNNNNMM---NQMGI-DLNESLSGLLP-- 235 Query: 204 RKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261 KKKI + V++ L+++ESD+L++ ++ ++IQ EN GI+F+DE DKI Sbjct: 236 -KKKISRTVPVREAREILIKEESDKLVNHGDLYHNAIQRAENTGIIFIDEIDKITGSGQN 294 Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321 VSR+GVQRD+LP+VEGS V+TKYG ++T HILFI SGAFH S+P+DL+ E+QGRFP Sbjct: 295 TSSDVSRQGVQRDILPIVEGSQVNTKYGLVDTSHILFIGSGAFHESKPSDLIAELQGRFP 354 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 +RV L L+K DF ILT+ ++ L+ QY L+ T+ + + FT ++I+ +A++A +N Sbjct: 355 IRVELNDLSKDDFVKILTEPKNALVKQYIALIGTDNVKVTFTIEAIERIAEIAEQVNHET 414 Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E++LEDI F ++ V I +YV IG D+ FIL Sbjct: 415 ENIGARRLHTILEKLLEDILFEGPSMEMGEVTITEKYVDSKIGSIAGNKDLSEFIL 470 >gi|217034384|ref|ZP_03439799.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10] gi|216943179|gb|EEC22649.1| hypothetical protein HP9810_889g29 [Helicobacter pylori 98-10] Length = 443 Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV----RESRRD 120 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V +E +D Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 121 EVREQASINAEERILDALVG------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 ++ E ++ L L K +N+ ++++ GE+ ++EI+IEV S Sbjct: 124 KIEEAVIEKIAKKFLPPLPNGVSEEKKQEYANSLLKTQQRIAQGELDNREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV K K +SV++ L + SD L+D +++ Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 KMEGLRRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|124506697|ref|XP_001351946.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum 3D7] gi|23504974|emb|CAD51757.1| ATP-dependent heat shock protein, putative [Plasmodium falciparum 3D7] Length = 922 Score = 359 bits (921), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 192/437 (43%), Positives = 286/437 (65%), Gaps = 9/437 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR Q+ D++ +++PKNIL++GPTGVGKT Sbjct: 487 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRIQVSDDMKKDIIPKNILMIGPTGVGKTE 546 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + E+REQA Sbjct: 547 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAEE 606 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD--TSSDISNFDIPGGAS 186 E IL +L+G + ++RK L+DG + DK I I++ + ++ SN + Sbjct: 607 TVENIILYSLLGNIKEE-EKNIWRKYLKDGSLDDKVISIDIPNYINNNIFSNDSVENAVK 665 Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 + N + S K++ K K M++++ +L++ E D I+ DT+ + +I VE Sbjct: 666 EALSNHQNIKSVKIIHQNINKQSDKKTMTIREARQKLLQLEIDSSINQDTILKTAINSVE 725 Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILFIA Sbjct: 726 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 785 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAF +P D+L E+QGR PV V L SL DF ILT T +NL+ Q L+KTEGI L Sbjct: 786 SGAFQRVKPNDMLNELQGRLPVHVTLSSLTIKDFIDILTKTHNNLLQQNIALLKTEGIDL 845 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT+D+I+ +A+ A ++N V +IG RRL T++E+++EDI++ + +++VID + V Sbjct: 846 KFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNQSIVIDKDKVN 905 Query: 421 LHIGDFPSETDMYHFIL 437 + F + D+ +I+ Sbjct: 906 KSLEGFIKQYDLKKYII 922 >gi|295426270|ref|ZP_06818930.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus amylolyticus DSM 11664] gi|295064009|gb|EFG54957.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus amylolyticus DSM 11664] Length = 458 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 187/460 (40%), Positives = 288/460 (62%), Gaps = 36/460 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV L++YIIGQ +AK++VAIAL NR+RR QLP ++ ++ PKN+L+ GPTGVGKT Sbjct: 5 TPKKIVELLNQYIIGQDEAKKSVAIALYNRYRRMQLPKQMQKDITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGRNVE ++RDL ++ + + +E+R +A+ Sbjct: 65 EIARRLADIVEAPFVKVEATKFTEVGYVGRNVESMVRDLAAKSVQMEEKKEFEEIRPEAA 124 Query: 128 INAEERILDALVG----------------------------KTATSNTREVFRKKLRDGE 159 A + ++ ALV N R ++L G Sbjct: 125 KEANKELVKALVPGIKHEHHYDSVFSFLNNLDDEEFDDEEVNDDIRNKRMTIAEQLNKGL 184 Query: 160 ISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 + D+++ IEV + D+ G G +G + LS + K RK K + V+ Sbjct: 185 LEDRDVTIEVEEKPKASPMSDMMGQMGMDIGSM-LSNMIPK-----RKIKRTLPVKDARE 238 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L+ +ES +++D D++++ +I+ +N GI+F+DE DK++A + VSREGVQRD+LP Sbjct: 239 LLINEESRKMVDYDSLYQRAIERAQNNGIIFIDEIDKVIAGNKKTSGEVSREGVQRDILP 298 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 +VEGS+V TK+G ++TDH+LFI +GAF S+P+DL+PE+QGRFP+RV L +L K DF I Sbjct: 299 IVEGSTVQTKFGPLSTDHVLFIGAGAFAESKPSDLIPELQGRFPIRVQLDALTKDDFVHI 358 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L D E++L+ QY LMK +GI L FT++++D +A++A +N +IGARRL T++E++L Sbjct: 359 LKDPENSLLKQYVALMKADGIKLIFTQEAVDRIAEIAYEVNQGTDNIGARRLSTILEKLL 418 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+ + D++ + + YV + D D+ FIL Sbjct: 419 EDVLYEGPDMEMGEITVTEAYVEEKLKDVIINKDLTKFIL 458 >gi|239636268|ref|ZP_04677270.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus warneri L37603] gi|239597623|gb|EEQ80118.1| ATP-dependent protease HslVU, ATPase subunit [Staphylococcus warneri L37603] Length = 467 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 186/460 (40%), Positives = 297/460 (64%), Gaps = 29/460 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P++IVS+L+ YI+GQ DAKR VAIALRNR+RR L + + E+ PKNIL++GPTGVGK Sbjct: 8 LTPKDIVSKLNEYIVGQDDAKRKVAIALRNRYRRSLLDEESKQEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ GAPFIKVE TKFTE+GYVGR+VE ++RDLVDV++ +V++ +++ V+++A Sbjct: 68 TEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKDEKKEMVKDEA 127 Query: 127 SINAEERILDALV----GKTATSNT--REVFRK--------------------KLRDGEI 160 + A ++++ LV K + N +F K + EI Sbjct: 128 TQKANDKLVKLLVPSMKKKASQGNNPLESLFGGAIPNFNQNNEEEEEPPTEEIKTKRSEI 187 Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS-GRKKKIR--MSVQKCYP 217 + + ++ + I PG + N ++ +M KKK+ + V+ Sbjct: 188 KKQLEEGKLEEEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKKKVEREVPVKTARK 247 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L D +D LID +T +++++++ E GI+F+DE DK+ + +G VSR+GVQRD+LP Sbjct: 248 ILADDFADELIDQETANQEALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQGVQRDILP 307 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 ++EGS + T+YG++NT+H+LFI +GAFHVS+P+DL+PE+QGRFP+RV L SL+ DF I Sbjct: 308 ILEGSMIQTQYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELDSLSVEDFVRI 367 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L + + +L+ QY+ L++TE + ++F++++I LA++A +N +IGARRL T++E++L Sbjct: 368 LKEPKLSLVKQYEALLQTEEVTVNFSDEAIIRLAEIAYQVNQDTDNIGARRLHTILEKML 427 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ED+SF A ++ V I +YV + + D+ FIL Sbjct: 428 EDLSFEAPNMPHAVVDITPQYVDDKLKSISTNKDLSAFIL 467 >gi|308063688|gb|ADO05575.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori Sat464] Length = 443 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 187/444 (42%), Positives = 293/444 (65%), Gaps = 15/444 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 +I + ++P N+ + F K +K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPEILRVQENVIKFFHKEQDKVKK---TLSVKEAKEALKAEISDTLLDGEAIK 239 Query: 235 RDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I T Sbjct: 240 MEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIKT 299 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 +HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L+ Sbjct: 300 EHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQALL 359 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K EGI + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 360 KVEGIEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVT 419 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I E ++ + D ++ ++ +IL Sbjct: 420 ITKELIQSKLEDLVADENLVKYIL 443 >gi|90961923|ref|YP_535839.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus salivarius UCC118] gi|122448948|sp|Q1WTJ0|HSLU_LACS1 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|90821117|gb|ABD99756.1| ATP-dependent hsl protease ATP-binding subunit [Lactobacillus salivarius UCC118] Length = 467 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 200/465 (43%), Positives = 292/465 (62%), Gaps = 39/465 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV+ELD+Y+IGQ AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRIQLPKDMQEDISPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE + RDLV+VA + + +VR QA+ Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126 Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD----------------------------- 157 A +R++ +V K N + LRD Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRDLQSGSFPNMNGNDMEEVTEDVRNERLSVA 186 Query: 158 -----GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 G + + E+ I+V D S+ +N G +GI +LS L S M +K + M+V Sbjct: 187 EQLKRGLLENNEVTIQVDDPSTQFNNQSGMLG-QMGI-DLSSLSS--MMPTKKVERTMTV 242 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L+++ES++L++ + +I+ EN GI+F+DE DKI ++ N VSREGVQ Sbjct: 243 AEAREILIKEESEKLVNSADLADAAIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQ 302 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RD+LP+VEGS +STKYG + TDHILFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+ Sbjct: 303 RDILPIVEGSQISTKYGLVKTDHILFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVD 362 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF ILT+ + L+ QY ++ T+ I + FT ++I +A+VA LN +IGARRL T+ Sbjct: 363 DFVKILTEPNNALVKQYIAMIGTDNIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTI 422 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LED+ F D+Q + I YV IG + D+ +IL Sbjct: 423 LEKLLEDLLFEGPDMQMGDIKITEAYVNDKIGSIVEDKDLSQYIL 467 >gi|254779462|ref|YP_003057567.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori B38] gi|254001373|emb|CAX29358.1| ATP-dependent Hsl protease ATP-binding, subunit HslU [Helicobacter pylori B38] Length = 443 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 189/445 (42%), Positives = 296/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E KV + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G+ S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 ++ EG+ + F +D+I LA ++ N N DIGAR L T +E+VLEDISF A D + V Sbjct: 359 LQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARMLHTTIEKVLEDISFEAEDYFGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|315038214|ref|YP_004031782.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus amylovorus GRL 1112] gi|325956669|ref|YP_004292081.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus acidophilus 30SC] gi|312276347|gb|ADQ58987.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus amylovorus GRL 1112] gi|325333234|gb|ADZ07142.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus acidophilus 30SC] gi|327183492|gb|AEA31939.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus amylovorus GRL 1118] Length = 465 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 192/466 (41%), Positives = 294/466 (63%), Gaps = 41/466 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL +++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLNKEMQKEITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + + V+ QA+ Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFERVKPQAT 124 Query: 128 INAEERILDALVGKTATSN-----------------------------TREV------FR 152 A ++++ L N T EV Sbjct: 125 KEANKQLVRLLAPGVKRENRESQMQQMQDMMSMLMGGNNQNNNDEEEVTDEVRNQRMDVA 184 Query: 153 KKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 +KL G + D+E+ IEV ++ + + L+++ K +K K + Sbjct: 185 EKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTLP 239 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ L+++ES +++D DT+++ +I+ +N GI+F+DE DKI+A + N VSREGV Sbjct: 240 VREAREVLIQEESRKMVDYDTIYQSAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGV 299 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K Sbjct: 300 QRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTK 359 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 DF IL D +++L+ QY LMK +GI L FT++++D +A++A ++N +IGARRL T Sbjct: 360 DDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFSVNQGTDNIGARRLST 419 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LED+ + D++ + I YV +GD + D+ FIL Sbjct: 420 ILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIITNKDLTKFIL 465 >gi|224418107|ref|ZP_03656113.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] gi|253827434|ref|ZP_04870319.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] gi|253510840|gb|EES89499.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] Length = 446 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 190/454 (41%), Positives = 299/454 (65%), Gaps = 25/454 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G Sbjct: 1 MENYIAMTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 TGVGKT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV +IN+V+E Sbjct: 61 STGVGKTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKE---- 116 Query: 121 EVREQASINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEID 166 E R++ + ++ +LD +V K E R+K+ +GE+ +I+ Sbjct: 117 EHRQKNAQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIE 176 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDES 224 IEV + +I + ++P + + E ++V + K+ K +S+++ L + S Sbjct: 177 IEVPKRAFEIEDGNMPAEFA----KVQETIARVFIASPKENPKKEVSIKEAKEILKIEAS 232 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSS 283 + L+D++++ ++ ++ E+ GI+F+DE DK+ + G S+EGVQRDLLP+VEGS Sbjct: 233 EALLDLESIKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSI 292 Query: 284 VSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 V+TKYGSI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++ ILT T++ Sbjct: 293 VNTKYGSIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKN 352 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +++ QY+ L+ E + L F+E++I ALA + N DIGARRL TV+E+V+E+ISF Sbjct: 353 SILKQYEALLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFE 412 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A + + + V I V+ + + + +D+ +IL Sbjct: 413 AENYKGQEVEITESLVKEKLDNLVANSDIARYIL 446 >gi|313141642|ref|ZP_07803835.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] gi|313130673|gb|EFR48290.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] Length = 440 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/448 (42%), Positives = 297/448 (66%), Gaps = 25/448 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS LD YIIGQ DAK+ VAIALRNR+RR QLP ++++E+MPKNIL++G TGVGK Sbjct: 1 MTPKEIVSYLDEYIIGQNDAKKIVAIALRNRYRRLQLPKEIQEEVMPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV +IN+V+E E R++ Sbjct: 61 TEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLVKE----EHRQKN 116 Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172 + ++ +LD +V K E R+K+ +GE+ +I+IEV Sbjct: 117 AQGIQKYVLDKIVEKLIPPLPKGASEQKIEEYQKASEKMRQKVENGEVDHLKIEIEVPKR 176 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDM 230 + +I + ++P + + E ++V + K+ K +S+++ L + S+ L+D+ Sbjct: 177 AFEIEDGNMPAEFA----KVQETIARVFIASPKENPKKEVSIKEAKEILKIEASEALLDL 232 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYG 289 +++ ++ ++ E+ GI+F+DE DK+ + G S+EGVQRDLLP+VEGS V+TKYG Sbjct: 233 ESIKQEGLKRAESSGIIFIDEIDKVAVSSNAQGRQDPSKEGVQRDLLPIVEGSIVNTKYG 292 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 SI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++ ILT T+++++ QY Sbjct: 293 SIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELNSLDEEVLYKILTQTKNSILKQY 352 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ E + L F+E++I ALA + N DIGARRL TV+E+V+E+ISF A + + Sbjct: 353 EALLAVEEVTLKFSEEAIRALAHYSQLANEKTEDIGARRLHTVVEQVIEEISFEAENYKG 412 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + V I V+ + + + +D+ +IL Sbjct: 413 QEVEITESLVKEKLDNLVANSDIARYIL 440 >gi|297379708|gb|ADI34595.1| heat shock protein HslVU, ATPase subunit HslU [Helicobacter pylori v225d] Length = 443 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E K + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|148977244|ref|ZP_01813871.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] gi|145963526|gb|EDK28789.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] Length = 369 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 187/357 (52%), Positives = 252/357 (70%), Gaps = 16/357 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV EL+R+IIGQ +AKR+VAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVHELNRHIIGQDNAKRSVAIALRNRWRRMQLEESLRVEVSPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVAI + + +V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVETIIRDLTDVAIKMTHQQAMKKVQFRA 123 Query: 127 SINAEERILDALVGK--------------TATSNTREVFRKKLRDGEISDKEIDIEVADT 172 AEERILDAL+ T +SNTR++FRKKLR+G++ DKEI+++VA Sbjct: 124 EEQAEERILDALLPPARDAWGQNEQSSEDTTSSNTRQIFRKKLREGKLDDKEIEVDVAAP 183 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + PG + L +F + G KKK +M ++ + L +E+ +L++ + Sbjct: 184 QMGVEIMSPPGMEEM-TNQLQGMFQNLAGD-TKKKRKMKIKDAFKALTEEEAAKLVNQEE 241 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++I EN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS+VSTK+G + Sbjct: 242 LKENAIFNAENNGIVFIDEIDKICKRGDSSGPDVSREGVQRDLLPLIEGSTVSTKHGMVK 301 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 TDHILFI SGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ +++L QY Sbjct: 302 TDHILFITSGAFQVAKPSDLIPELQGRLPIRVELEALSANDFKRILTEPKASLTEQY 358 >gi|68071657|ref|XP_677742.1| ATP-dependent heat shock protein [Plasmodium berghei strain ANKA] gi|56497972|emb|CAI00125.1| ATP-dependent heat shock protein, putative [Plasmodium berghei] Length = 600 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 186/439 (42%), Positives = 292/439 (66%), Gaps = 11/439 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR QL D++ +++PKNIL++GPTGVGKT Sbjct: 163 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDDDMKKDVIPKNILMIGPTGVGKTE 222 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + +E++EQA Sbjct: 223 IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKSKMENEIKEQAEE 282 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVAD----TSSDISNFDIPGG 184 + IL +L+G + +++++K L++G + DK I+I++ ++ +N + Sbjct: 283 TVDNIILYSLLGNSIKYEEKQIWKKYLKEGLLDDKIINIDIPSYINNNNNMFTNDSVENA 342 Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 + N + S K++ K K M++++ +L++ E D I+ D + + +I Sbjct: 343 VKEALSNHQNIKSVKIIHQNMNKQNDKRTMTIKEAKQKLLQIEIDSSINQDVILKTAINS 402 Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 VE GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILF Sbjct: 403 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 462 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAF +P D+L E+Q R PV V+L SL+ DF ILT T +NL+ Q L+KTEGI Sbjct: 463 IASGAFQRVKPNDMLNELQ-RLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGI 521 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L+FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++ K++VID E Sbjct: 522 DLNFTDDAIESIANAAHDMNTHIENIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEV 581 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + F + D+ +I+ Sbjct: 582 VKKSLEGFIKQFDLKKYII 600 >gi|224437278|ref|ZP_03658250.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi CCUG 18818] gi|313143733|ref|ZP_07805926.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi CCUG 18818] gi|313128764|gb|EFR46381.1| ATP-dependent protease ATP-binding subunit [Helicobacter cinaedi CCUG 18818] Length = 442 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 296/447 (66%), Gaps = 23/447 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV LD YIIGQ +AK+AVAIALRNR+RR +L +++DE+ PKNIL++G TGVG Sbjct: 4 NMTPKQIVEYLDGYIIGQSEAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGSTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV ++N+V R + Q Sbjct: 64 KTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQ--KAQ 121 Query: 126 ASIN------AEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTS 173 A IN +++L L + S E ++K+ GE+ + +I+IE++ Sbjct: 122 AEINDYIIEKITKKLLPPLPQGASESKQNEYDISFAKMKQKVLKGEVDELKIEIEIS-KK 180 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + + ++P ++ + E KV+ + K K +SV++ LM + ++ ++D + Sbjct: 181 AQVGDDNLPPD----MIKVQESIFKVLNVTNDKVKKEVSVKEAKEALMYEATESVLDSEA 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 + + ++ E+ G++F+DE DK+ ++DS S+EGVQRDLLP+VEGS V+TKYG Sbjct: 237 IRAEGLKRAESNGVIFIDEIDKVAVGSKDSSRQ-DPSKEGVQRDLLPIVEGSVVNTKYGQ 295 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 I TD+ILFIA+GAFH S+P+DL+PE+QGRFP+RV L SLN+ ILT T+S+L+ QY+ Sbjct: 296 IKTDYILFIAAGAFHFSKPSDLIPELQGRFPLRVELDSLNEESLYKILTQTKSSLLRQYQ 355 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ TE I L+F++++I +A ++ + N DIGARRL T +ERVLE+ISF+ Q K Sbjct: 356 LLLDTENIRLEFSDEAIREIAKLSHSANERTEDIGARRLHTTIERVLEEISFNIDTYQGK 415 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V I AE V+ +GD D+ +IL Sbjct: 416 EVTITAEMVKERLGDVVENVDLARYIL 442 >gi|259046720|ref|ZP_05737121.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella adiacens ATCC 49175] gi|259036616|gb|EEW37871.1| heat shock protein HslVU, ATPase subunit HslU [Granulicatella adiacens ATCC 49175] Length = 468 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 197/469 (42%), Positives = 305/469 (65%), Gaps = 33/469 (7%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M+ + +PRE+VSELD++I+GQQDAKRA+A+ALRNR+RR L +++ E+ PKN+L++G Sbjct: 1 MQANISKTPREVVSELDQFIVGQQDAKRALAVALRNRYRRLLLDEEMKKEVTPKNLLMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT ++RRLA+L APF KVE TKFTE+GYVGR+VE ++RDLV+ AI IV + +++ Sbjct: 61 PTGVGKTELARRLAKLVDAPFAKVEATKFTEVGYVGRDVESMVRDLVENAIQIVTKLKQE 120 Query: 121 EVREQA---SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-- 175 EV+ QA ++ +IL + K ++ ++ + I + ++ E+ + ++ Sbjct: 121 EVKLQAFDKAVKKLAKILKPGIMKKVSNPQQDSLFNMFQQMGIQNPGLEPEMKEEVTEEI 180 Query: 176 -ISNFDIPGGASVGILN-------LSELFSKVMGSGRKKKIRMSVQKCYPELMRDES--- 224 S DI G+L+ L+E ++ GSG + + M +Q ++ + Sbjct: 181 AQSRRDIEQQLRNGVLDSKEVTIELTEKPMRMAGSGNQMEQMMQIQSVLDQMTPKKKISR 240 Query: 225 ----------------DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 + LI+ + +H +++++ E GI+F+DE DKI A+ NG VSR Sbjct: 241 TVTVKEALELLTEEEANNLINQEDMHAEALKLAETSGIIFIDEIDKIAAKGQ-NGGEVSR 299 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS V+TKYG INTDHILFIASGAFHV++P+DL+PE+QGRFP+RV L+ Sbjct: 300 EGVQRDILPIVEGSQVNTKYGVINTDHILFIASGAFHVAKPSDLMPELQGRFPIRVELQD 359 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L+K DF IL + ++ L+ QYK L+ TE + + FT++++ LA++A +NST+ +IGARR Sbjct: 360 LSKEDFERILMEPKNALLKQYKALLATENVEVVFTKEAVSKLAEIAFEVNSTMENIGARR 419 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E VLE++ F A +Q ++ I +YV + + D+ +IL Sbjct: 420 LHTILETVLEELLFEAPTMQMGSIQITEQYVESKLNAIREDQDLTKYIL 468 >gi|300361602|ref|ZP_07057779.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus gasseri JV-V03] gi|300354221|gb|EFJ70092.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus gasseri JV-V03] Length = 464 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV LD+YIIGQ +AK++VA+AL NR+RR QLP ++ ++ PKN+L+ GPT Sbjct: 1 MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ + + + D V Sbjct: 61 GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153 + QA+ A R++ +V N ++ Sbjct: 121 KVQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180 Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + ++E+ IEV D+ G +GI ++S L +M K+ Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V L+++ES +LI+ D++++ +I+ + GI+F+DE DKI A + VSRE Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D+ + I +YV + D D+ FIL Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464 >gi|81428595|ref|YP_395595.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610237|emb|CAI55286.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus sakei subsp. sakei 23K] Length = 475 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 196/474 (41%), Positives = 297/474 (62%), Gaps = 46/474 (9%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+ IV+ELD+++IGQ AK+AVA+AL NR+RR QL ++ E+ PKN+L++GPTGV Sbjct: 7 MNKTPKSIVAELDKFVIGQDKAKKAVAVALYNRYRRMQLSTKMQQEITPKNLLMIGPTGV 66 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ AP IKVE TKFTE+GYVGR+VE ++RDL DVA+++ + VR Sbjct: 67 GKTEIARRLAKVVDAPLIKVEATKFTEVGYVGRDVESMVRDLADVAVHMEESEQFKNVRG 126 Query: 125 QASINAEERILDALV--------------------------GKTAT----SNTREV---- 150 +A+ A++R++ LV G+T + T EV Sbjct: 127 KAARQADKRLVKLLVPGIKKEQRKNNNSMNDLMSMFTALQNGETPAGLNQAETEEVTDEV 186 Query: 151 ------FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204 +++L G + D+EI+I+V + D+ G +GI +L++ +M + Sbjct: 187 RDQRLSVKEQLDKGLLDDREIEIQVDEPKKAAPMNDMMG--QMGI-DLNDTLGSIMP--K 241 Query: 205 KKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK +R ++V++ +++ESD+L++ ++ D++Q EN GI+F+DE DKI A Sbjct: 242 KKMVRTVTVKEAREIFIQEESDKLVNHADIYHDALQRAENTGIIFIDEIDKIAAGGKKQS 301 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSREGVQRD+LP+VEGS V+TKYG + TDHILFI SGAF S+P+DL+ E+QGRFP+R Sbjct: 302 GEVSREGVQRDILPIVEGSQVNTKYGVLKTDHILFIGSGAFAESKPSDLIAELQGRFPIR 361 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L+ L ++DF ILT+ + L+ QY L+ +G+ + FT ++I +A +A +N + Sbjct: 362 VELEDLTEADFVRILTEPNNALVKQYMALIGADGVHVTFTMEAIGRIAAIAFQVNHDTEN 421 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LEDI F D+Q + I +YV IG ++ D+ FIL Sbjct: 422 IGARRLATILEKLLEDILFEGPDMQMGDITITEQYVNDKIGKIVADKDLTRFIL 475 >gi|256843166|ref|ZP_05548654.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus crispatus 125-2-CHN] gi|256850235|ref|ZP_05555664.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus MV-1A-US] gi|262046373|ref|ZP_06019335.1| heat shock protein [Lactobacillus crispatus MV-3A-US] gi|293380242|ref|ZP_06626323.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus crispatus 214-1] gi|295692922|ref|YP_003601532.1| ATP-dependent protease hslvu, atpase subunit hslu [Lactobacillus crispatus ST1] gi|312977301|ref|ZP_07789049.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus crispatus CTV-05] gi|256614586|gb|EEU19787.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus crispatus 125-2-CHN] gi|256712872|gb|EEU27864.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus MV-1A-US] gi|260573244|gb|EEX29802.1| heat shock protein [Lactobacillus crispatus MV-3A-US] gi|290923209|gb|EFE00131.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus crispatus 214-1] gi|295031028|emb|CBL50507.1| ATP-dependent protease HslVU, ATPase subunit HslU [Lactobacillus crispatus ST1] gi|310895732|gb|EFQ44798.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus crispatus CTV-05] Length = 465 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 298/464 (64%), Gaps = 37/464 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL +++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKTQAT 124 Query: 128 INAEERILDALVGKTATSNTRE------VFRKKLRDGEISDKEIDIEVADTSSDISN--F 179 A + ++ L+ RE + GE +++E D E D S+D+ N Sbjct: 125 KEANKELV-RLLAPAEKHERRENQMQQMQDMMSMLMGE-NNREEDHE-EDVSADVRNKRM 181 Query: 180 DIPGGASVGILNLSELFSKVMGSGR------------------------KKKIR--MSVQ 213 D+ + G+L E+ +V + + KKK++ +SV+ Sbjct: 182 DVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSVK 241 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L+++ES +L+D D +++ +I+ +N GI+F+DE DKI+A + N VSREGVQR Sbjct: 242 EAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQR 301 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K D Sbjct: 302 DILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 361 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL D +++L+ QY LMK +GI L FT++++D +A++A ++N +IGARRL T++ Sbjct: 362 FVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTIL 421 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LED+ + D++ + + YV +GD D+ FIL Sbjct: 422 EKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 465 >gi|70952370|ref|XP_745358.1| ATP-dependent heat shock protein [Plasmodium chabaudi chabaudi] gi|56525655|emb|CAH76832.1| ATP-dependent heat shock protein, putative [Plasmodium chabaudi chabaudi] Length = 471 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 188/439 (42%), Positives = 290/439 (66%), Gaps = 10/439 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR QL D++ +++PKNIL++GPTGVGKT Sbjct: 33 PHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGKTE 92 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + E++EQA Sbjct: 93 IARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKNKMETEIKEQAEE 152 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD----ISNFDIPGG 184 IL +L+G +++++K L++G + DK I+I++ + ++ +N + Sbjct: 153 AVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIINIDIPNYINNNNNMFTNDSVENA 212 Query: 185 ASVGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 + N + S K++ K K M++++ +L++ E D I+ D + + +I Sbjct: 213 VKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDAILKTAISS 272 Query: 241 VENYGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 VE GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILF Sbjct: 273 VEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILF 332 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 IASGAF +P D+L E+QGR PV V+L SL+ DF ILT T +NL+ Q L+KTEGI Sbjct: 333 IASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIKDFIEILTKTHNNLLKQNIALLKTEGI 392 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+D+I+++A+ A ++N+ + +IG RRL T++E+++E+I++ KT+VID E Sbjct: 393 DLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKIMEEINYDVHKNANKTIVIDKEV 452 Query: 419 VRLHIGDFPSETDMYHFIL 437 V+ + F + D+ +I+ Sbjct: 453 VKKSLEGFIKQFDLKKYII 471 >gi|227879133|ref|ZP_03997017.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus JV-V01] gi|227861290|gb|EEJ68925.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus JV-V01] Length = 468 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 298/464 (64%), Gaps = 37/464 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL +++ E+ PKN+L+ GPTGVGKT Sbjct: 8 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKEMQREVTPKNLLMAGPTGVGKT 67 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 68 EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKTQAT 127 Query: 128 INAEERILDALVGKTATSNTRE------VFRKKLRDGEISDKEIDIEVADTSSDISN--F 179 A + ++ L+ RE + GE +++E D E D S+D+ N Sbjct: 128 KEANKELV-RLLAPAEKHERRENQMQQMQDMMSMLMGE-NNREEDHE-EDVSADVRNKRM 184 Query: 180 DIPGGASVGILNLSELFSKVMGSGR------------------------KKKIR--MSVQ 213 D+ + G+L E+ +V + + KKK++ +SV+ Sbjct: 185 DVAEKLAKGLLEDHEVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDLMPKKKVKRTLSVK 244 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L+++ES +L+D D +++ +I+ +N GI+F+DE DKI+A + N VSREGVQR Sbjct: 245 EAREVLIQEESRKLVDYDAIYQHAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREGVQR 304 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K D Sbjct: 305 DILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKDD 364 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F IL D +++L+ QY LMK +GI L FT++++D +A++A ++N +IGARRL T++ Sbjct: 365 FVKILKDPQNSLLKQYIALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLSTIL 424 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E++LED+ + D++ + + YV +GD D+ FIL Sbjct: 425 EKLLEDVLYEGPDMEMGEITVTEAYVEDKLGDIIMNKDLTKFIL 468 >gi|116629575|ref|YP_814747.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri ATCC 33323] gi|238853066|ref|ZP_04643458.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri 202-4] gi|282852046|ref|ZP_06261404.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri 224-1] gi|311110782|ref|ZP_07712179.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri MV-22] gi|122273487|sp|Q043R3|HSLU_LACGA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|116095157|gb|ABJ60309.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus gasseri ATCC 33323] gi|238834314|gb|EEQ26559.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri 202-4] gi|282556806|gb|EFB62410.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri 224-1] gi|311065936|gb|EFQ46276.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus gasseri MV-22] Length = 464 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 190/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV LD+YIIGQ +AK++VA+AL NR+RR QLP ++ ++ PKN+L+ GPT Sbjct: 1 MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ + + + D V Sbjct: 61 GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKEQFDRV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153 + QA+ A R++ +V N ++ Sbjct: 121 KLQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQAQDNEEVTDDIRNERL 180 Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + ++E+ IEV D+ G +GI ++S L +M K+ Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V L+++ES +LI+ D++++ +I+ + GI+F+DE DKI A + VSRE Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D+ + I +YV + D D+ FIL Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464 >gi|42519038|ref|NP_964968.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii NCC 533] gi|62286843|sp|Q74JJ5|HSLU_LACJO RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|41583325|gb|AAS08934.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus johnsonii NCC 533] Length = 464 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV LD+YIIGQ +AK++VA+AL NR+RR QLP ++ ++ PKN+L+ GPT Sbjct: 1 MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ + + + + V Sbjct: 61 GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120 Query: 123 REQASINAEERILDALVG---------------------------------KTATSNTRE 149 + QA+ A R++ +V A N R Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDAIRNERL 180 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + ++E+ IEV D+ G +GI ++S L +M K+ Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V L+++ES +LI+ D++++ +I+ + GI+F+DE DKI A + VSRE Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D+ + I +YV + D D+ FIL Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464 >gi|319957237|ref|YP_004168500.1| heat shock protein hslvu, atpase subunit hslu [Nitratifractor salsuginis DSM 16511] gi|319419641|gb|ADV46751.1| heat shock protein HslVU, ATPase subunit HslU [Nitratifractor salsuginis DSM 16511] Length = 440 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 201/444 (45%), Positives = 289/444 (65%), Gaps = 17/444 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV LDRY+IGQQ+AK+ +AIALRNRWRR QL +++ +++PKNIL++G TGVGK Sbjct: 1 MTPQEIVEYLDRYVIGQQEAKKTIAIALRNRWRRMQLDEEMQRDVVPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T ISRRLAR+ PFIKVE +KFTE+G+VGR+VE IIRDL A+ +VRE + +E+ Sbjct: 61 TEISRRLARMMKLPFIKVEASKFTEVGFVGRDVESIIRDLTVTALQLVREEENERNKEKI 120 Query: 127 SINAEERILDALVGKT---ATSNTREVF-------RKKLRDGEISDKEIDIEVADTSSDI 176 E +I++ L+ A+ R+ + + +L GE+ +I++E+ D+ Sbjct: 121 EAYVENKIIEKLLPPLPAGASEQKRQEYEASFARMQARLERGELDHLKIEVEMPPPGVDL 180 Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKI--RMSVQKCYPELMRDESDRLIDMDTVH 234 S ++P + N+ E KV+G KK ++V++ L + S L+D + + Sbjct: 181 SGGNVPPEMA----NVQESILKVLGGLGKKGQKKEVTVKEARKILEAEASQELLDEEKLK 236 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 +I+ VE GIVFLDE DKI + G S+EGVQRDLLP+VEGS+V+TK G +NT Sbjct: 237 AKAIEKVEQGGIVFLDEIDKIAVPSNVTGRQDPSKEGVQRDLLPIVEGSTVTTKIGPVNT 296 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 DHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++ ILT+ +++LI QYK LM Sbjct: 297 DHILFIAAGAFHLSKPSDLIPELQGRFPLRVELSSLDEEALYRILTEPKNSLIKQYKALM 356 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 EG+ L+F E ++ A+A + N DIGARRL TVMER+LED+SF A + +T+V Sbjct: 357 AVEGVTLEFEESALRAIARYSALANEKTEDIGARRLHTVMERILEDLSFEADKRKGETIV 416 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 ID +V + + D +IL Sbjct: 417 IDVAHVESKLEELVENEDTTRYIL 440 >gi|312879578|ref|ZP_07739378.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas paucivorans DSM 12260] gi|310782869|gb|EFQ23267.1| heat shock protein HslVU, ATPase subunit HslU [Aminomonas paucivorans DSM 12260] Length = 470 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 213/465 (45%), Positives = 300/465 (64%), Gaps = 34/465 (7%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PR +V+ LDRYI+GQ AKRAVA+ALRNR RR++LP +L E+ PKNIL+VGPTGVG Sbjct: 7 SLTPRTVVAYLDRYIVGQDKAKRAVAVALRNRIRRRRLPEELAREVSPKNILMVGPTGVG 66 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARL APF+KVE TKFTE+GYVGR+VE +IRDLV+ ++ +VR +EV+E Sbjct: 67 KTEIARRLARLVEAPFVKVEATKFTEVGYVGRDVESMIRDLVEASVQMVRRRLIEEVQEP 126 Query: 126 ASINAEERILDALVGKTATS--------------------------------NTREVFRK 153 A+ AEERILDAL+ + T TRE R+ Sbjct: 127 AARAAEERILDALLPRPKTEAAVPDFLRLFGAGRETPPPAASPAPPEPEVREGTREKLRE 186 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 LR G++ + +++EV + S GG LNL EL +M R K+ ++V+ Sbjct: 187 LLRAGKLDGRSVEVEVPEGSRVGMTLMGAGGLEEMGLNLGELLGGLMPK-RTKRKTVTVE 245 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQ 272 + L +E+++L+D + V R+++ E GI+F+DE DKI SG+G VSREGVQ Sbjct: 246 EARRLLQAEEAEKLVDQEAVVREAVAKAEQEGILFVDEIDKIAGGGSGHGGPDVSREGVQ 305 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 RDLLP+VEG V TKYG + TDH+LFIA+GAFH ++P+DL+PE+QGR P+RV L+ L + Sbjct: 306 RDLLPIVEGCVVQTKYGPVQTDHMLFIAAGAFHKTKPSDLVPELQGRLPIRVELQPLREE 365 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 D IL + ES+L+ QY+ L+ TEG+ L F E + ALA +A +N + DIGARRL T+ Sbjct: 366 DLVRILGEPESSLVRQYEALLGTEGVRLRFEESGLRALAALAARMNRDLEDIGARRLHTL 425 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LE+ISF A + +E+ V +DA YV +G + + ++L Sbjct: 426 LEQLLEEISFQAPETEEQDVTVDAPYVEGRLGPLSEDREARKYLL 470 >gi|308182670|ref|YP_003926797.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori PeCan4] gi|308064855|gb|ADO06747.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori PeCan4] Length = 443 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 190/445 (42%), Positives = 293/445 (65%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+ +AIALRNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E K + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKIKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F + +I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYFGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|317009508|gb|ADU80088.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori India7] Length = 443 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/445 (42%), Positives = 293/445 (65%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E K + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI G S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEAGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQDV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|207092709|ref|ZP_03240496.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori HPKX_438_AG0C1] Length = 443 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 187/445 (42%), Positives = 295/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 +I + ++P N+ + F K +K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPEILRVQENVIKFFHKEQDKVKK---TLSVKEAKEALKAEISDTLLDSEAIK 239 Query: 235 RDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI +++SG S+EGVQRDLLP+VEGS V+TKYGSI Sbjct: 240 MEGLKRAESSGVIFIDEIDKIAVSSKESGRQ-DPSKEGVQRDLLPIVEGSVVNTKYGSIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F + +I LA ++ N N DIGARRL T +E+VLEDISF A D + V Sbjct: 359 LKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQKV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|219684673|ref|ZP_03539616.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii PBr] gi|219672035|gb|EED29089.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii PBr] Length = 448 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 302/444 (68%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E + VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ + I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEVDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N D+GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|23010578|ref|ZP_00051218.1| COG1220: ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Magnetospirillum magnetotacticum MS-1] Length = 296 Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 183/294 (62%), Positives = 232/294 (78%), Gaps = 3/294 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDR+I+GQ+DAKRAVAIALRNRWRRQQL LRDE+ PKNIL++GPTG G Sbjct: 3 TFSPREIVSELDRFIVGQKDAKRAVAIALRNRWRRQQLTGPLRDEVAPKNILMIGPTGCG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLAGAPF+KVE TKFTE+GYVGR+VEQI+RDLV+V I + RE +R V+ + Sbjct: 63 KTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVEQIVRDLVEVGIGLTREEKRKAVKAK 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD-ISNFDIPG- 183 A AE RILDALVG TA+ TRE FRKKLR+ E+ DKE++IE+A + + F+IPG Sbjct: 123 AEAAAEARILDALVGPTASQATRESFRKKLRNSELDDKEVEIELAPSGPQGMPMFEIPGM 182 Query: 184 -GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 GAS+G +NLS++ K +G R K R++V Y L+ +ESD+L+D D + R++I+ VE Sbjct: 183 PGASMGAINLSDMLGKALGGQRGKPRRITVADAYAPLIAEESDKLVDDDALTREAIREVE 242 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 + GIVFLDE DKI AR+ +G VSREGVQRDLLPL+EG++V+TK+G + TDHI Sbjct: 243 DNGIVFLDEIDKICAREGRSGADVSREGVQRDLLPLIEGTTVATKHGPVKTDHI 296 >gi|188527647|ref|YP_001910334.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter pylori Shi470] gi|238691930|sp|B2UTX2|HSLU_HELPS RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|188143887|gb|ACD48304.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori Shi470] Length = 443 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 188/445 (42%), Positives = 294/445 (66%), Gaps = 17/445 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +PREIV+ LD YIIGQ++AK+++AIA RNR+RR QL L++E+ PKNIL++G TGV Sbjct: 4 LNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV+ ++ +V ++++++ Sbjct: 64 GKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKD 123 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E+I L+ K +N+ ++++ GE+ +EI+IEV S Sbjct: 124 KIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSI 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDTV 233 +I + ++P IL + E K + K K +SV++ L + SD L+D + + Sbjct: 184 EIDS-NVPPE----ILRVQENVIKFFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAI 238 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 + ++ E+ G++F+DE DKI V+ G S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 KMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIK 298 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L+SL + +ILT T++++I QY+ L Sbjct: 299 TEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQAL 358 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +K EG+ + F +++I LA ++ N N DIGARRL T +E+VLEDISF A + + V Sbjct: 359 LKVEGVGIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAENYSGQNV 418 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 I E V+ + D ++ ++ +IL Sbjct: 419 TITKELVQSKLEDLVADENLVKYIL 443 >gi|116333448|ref|YP_794975.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis ATCC 367] gi|116098795|gb|ABJ63944.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus brevis ATCC 367] Length = 476 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/468 (41%), Positives = 299/468 (63%), Gaps = 42/468 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV LD+Y+IGQ +AK+A+AIALRNR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 13 TPKEIVGLLDQYVIGQDEAKKAIAIALRNRYRRMQLDPAMQEEISPKNMLMIGPTGVGKT 72 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF KVE +KFTE+GYVGR+VE ++RDLV+V++++ ++ + VR A+ Sbjct: 73 EIARRLAKIVHAPFTKVEASKFTEVGYVGRDVESMVRDLVEVSVSMQKQDQFKNVRADAT 132 Query: 128 INAEERILDALV-------------------------GKTATS------------NTREV 150 A +R++ L G+T T+ N R Sbjct: 133 QAANKRLVKLLAPAKKKENKNNNDFANMMNMFTQMQNGQTPTAPNDQEEVTDEIRNERLS 192 Query: 151 FRKKLRDGEISDKEIDIEVAD-TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 ++L G + + ++IE+ D ++ ++ ++ G +GI +L++ +M R K+ Sbjct: 193 LTEQLNQGLLENHMVEIEMDDPQQANATDNNMLG--QMGI-DLNDTLGSIMPKKRIKRT- 248 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V + L+ +ES++L++ ++ D+I+ EN GI+FLDE DKI S N VSRE Sbjct: 249 VTVAEAREILVAEESEKLVNNADINHDAIKRAENTGIIFLDEIDKIAKGSSQNSGDVSRE 308 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEG+ V TKYG+I+TDHILFIA+GAF S+P+DL+ E+QGRFP+RV L L Sbjct: 309 GVQRDILPIVEGTQVKTKYGTIDTDHILFIAAGAFAESKPSDLIAELQGRFPIRVELNDL 368 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 +K+DF ILT+ + LI QY L+ T+ + + FT ++I+ +A++A LN +IGARRL Sbjct: 369 SKADFVRILTEPNNALIKQYIALIGTDNVKVTFTMEAIERIAELAFELNHENQNIGARRL 428 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 QTV+E++LED+ + D+ V I YV IGD D+ +IL Sbjct: 429 QTVLEKLLEDLLYEGPDMGTGDVTITESYVNDKIGDIVQNKDLSRYIL 476 >gi|224532088|ref|ZP_03672720.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana VS116] gi|224511553|gb|EEF81959.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia valaisiana VS116] Length = 448 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 191/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVEELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APF+KVE TK+TE+GYVGR+VE ++RDL+ +A+N+V++ VRE A + Sbjct: 71 IARRLSKLIKAPFLKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKDEMYSTVREDALV 130 Query: 129 NAEERILDALVGKTATSNT------------REVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+D+L + S +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVDSLFKGSGNSKNIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E+++D +A++ N+N ++GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAVDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|159465693|ref|XP_001691057.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas reinhardtii] gi|158279743|gb|EDP05503.1| ATP-dependent subunit of the HslUV protease [Chlamydomonas reinhardtii] Length = 559 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 198/449 (44%), Positives = 285/449 (63%), Gaps = 19/449 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +P+ +V LD+YIIGQ DAKRAVA+A RNRWRR+++PA +RD+++PKNILL+GPTG G Sbjct: 113 KMTPKSVVELLDKYIIGQDDAKRAVAVAYRNRWRRKRVPATIRDDIVPKNILLIGPTGCG 172 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++ I++VR R + Sbjct: 173 KTEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAGISLVRSRLRKQHEAA 232 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 + EERIL AL+ + + R +LR+GE+ D I++++ + S I Sbjct: 233 LKMAVEERILAALLRQDHLGGA-DALRTRLRNGELEDAFIEVDLTSSGRGGSGGGIIDLG 291 Query: 186 SVG-------ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 G ++NL L S R ++R V++ L E++R+ + + +++I Sbjct: 292 GGGGGPQGPVVINLERLMSGKRDV-RTLRVRHGVREARSLLEDSEAERMFPPEQLVKEAI 350 Query: 239 QMVENYGIVFLDEFDKIVARDSGN----GIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 E GIVF+DE DKIV+ G S EGVQRDLLP++EGS VSTK+G++NTD Sbjct: 351 TATEQDGIVFIDEIDKIVSGGRGERSWRSGDPSSEGVQRDLLPIIEGSVVSTKHGNVNTD 410 Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 HILFI +GAFH +P+DL+ E+QGR P+RV LK L + DF ILT+ E NLI Q + L+ Sbjct: 411 HILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFLRILTEPEYNLIKQQQVLLA 470 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ------ 408 EGI L+FT D++ + VA +N T+ +IGARRL V+ERV+E++SFSA +L+ Sbjct: 471 AEGIELEFTADALAEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSFSAPELKGAYTGP 530 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + ID +V + + D+ +IL Sbjct: 531 KVKYFIDKAHVDRTLSSLLQKQDLSRYIL 559 >gi|219685629|ref|ZP_03540444.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii Far04] gi|219672817|gb|EED29841.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia garinii Far04] Length = 448 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 302/444 (68%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E + VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYNTVRDDALL 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ + I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEVDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKYKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N D+GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENEDLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|329667428|gb|AEB93376.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii DPC 6026] Length = 464 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV LD+YIIGQ +AK++VA+AL NR+RR QLP ++ ++ PKN+L+ GPT Sbjct: 1 MTEEKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ + + + + V Sbjct: 61 GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153 + QA+ A R++ +V N ++ Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180 Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + ++E+ IEV D+ G +GI ++S L +M K+ Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V L+++ES +LI+ D++++ +I+ + GI+F+DE DKI A + VSRE Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D+ + I +YV + D D+ FIL Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464 >gi|227889900|ref|ZP_04007705.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii ATCC 33200] gi|268319569|ref|YP_003293225.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus johnsonii FI9785] gi|227849344|gb|EEJ59430.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii ATCC 33200] gi|262397944|emb|CAX66958.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus johnsonii FI9785] Length = 464 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 290/468 (61%), Gaps = 37/468 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 +T +P++IV LD+YIIGQ +AK++VA+AL NR+RR QLP ++ ++ PKN+L+ GPT Sbjct: 1 MTEKKTPKQIVELLDKYIIGQNEAKKSVAVALYNRYRRLQLPKQMQQDITPKNMLMAGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV+ A+ + + + + V Sbjct: 61 GVGKTEIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVEEAVRMEEKDQFEHV 120 Query: 123 REQASINAEERILDALVGKTATSNTREVFRK----------------------------- 153 + QA+ A R++ +V N ++ Sbjct: 121 KMQATKKANNRLVKLIVPGIKRENRENSMQQMMQMLSGNFNMNQPQDNEEVTDDIRNERL 180 Query: 154 ----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +L G + ++E+ IEV D+ G +GI ++S L +M K+ Sbjct: 181 SVADQLNKGLLENREVTIEVEQAPKVNPMGDMMG--QMGI-DMSSLMGDLMPKKTVKRT- 236 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V L+++ES +LI+ D++++ +I+ + GI+F+DE DKI A + VSRE Sbjct: 237 LKVSDAREVLIQEESKKLINYDSLYQRAIERTQQNGIIFIDEIDKITAGNKKTSGEVSRE 296 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 297 GVQRDILPIVEGSTVSTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 356 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF IL D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL Sbjct: 357 TQEDFVKILKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRL 416 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D+ + I +YV + D D+ FIL Sbjct: 417 ATILEKLLEDVLYEGPDMNMGEITITQKYVDQKLSDIIINKDLTKFIL 464 >gi|153951339|ref|YP_001398382.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. doylei 269.97] gi|166221473|sp|A7H4F2|HSLU_CAMJD RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|152938785|gb|ABS43526.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. doylei 269.97] Length = 439 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 195/447 (43%), Positives = 303/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLTNAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRSENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ F ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKAFYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + LDF ++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELDFDNEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|237752721|ref|ZP_04583201.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] gi|229376210|gb|EEO26301.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] Length = 440 Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 196/450 (43%), Positives = 301/450 (66%), Gaps = 29/450 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVS LD YIIGQ+DAK+ VAIALRNR+RR QLP +++DE+MPKNIL++G TGVGK Sbjct: 1 MTPKEIVSYLDEYIIGQKDAKKIVAIALRNRYRRLQLPKEIQDEVMPKNILMIGSTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV +IN+++E E R ++ Sbjct: 61 TEIARRMAKIMGLPFVKVEASKYTEVGFVGRDVESMVRDLVVASINLIKE----EHRSKS 116 Query: 127 SINAEERILDALV-------GKTATSNTREVF-------RKKLRDGEISDKEIDIEVADT 172 + + E+ +LD +V K A+ E + R+K+ +GE+ +I++EV Sbjct: 117 TQDIEKYVLDKIVEKLIPPLPKGASEQKIEEYEKTVSKMRQKVLNGEMDHLKIEVEVPKK 176 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ-KCYPELMRDE-SDRLIDM 230 + +I + ++P + + E +KV + K + V K EL++ E S+ L+D+ Sbjct: 177 TFEIEDGNMPAEFA----KVQETIAKVFIASPKDSPKKEVTIKEAKELLKVEASEALLDL 232 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK 287 D + + ++ E+ GI+F+DE DK+ SGNG S+EGVQRDLLP+VEGS V+TK Sbjct: 233 DAIKHEGLKRAESSGIIFIDEIDKVAV--SGNGSQRQDPSKEGVQRDLLPIVEGSVVNTK 290 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YGSI TDHILFIA+GAF +S+P+DL+ E+QGRFP+RV L SL++ ILT T+++++ Sbjct: 291 YGSIKTDHILFIAAGAFSLSKPSDLIAELQGRFPLRVELDSLDEEALYKILTQTKNSILR 350 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY+ L+ E + L F++++I ALA + N DIGARRL TV+E+V+E+ISF A + Sbjct: 351 QYEALLGVEEVRLSFSDEAIRALAHYSQVANEKTEDIGARRLHTVVEQVIEEISFEAENY 410 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + + V I V+ + +++D+ +IL Sbjct: 411 KGQDVEITEVLVKEKLESLVADSDIARYIL 440 >gi|156097158|ref|XP_001614612.1| ATP-dependent heat shock protein [Plasmodium vivax SaI-1] gi|148803486|gb|EDL44885.1| ATP-dependent heat shock protein, putative [Plasmodium vivax] Length = 824 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 192/437 (43%), Positives = 287/437 (65%), Gaps = 9/437 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EIV L++YIIGQ +AK+ VA ALR RWRR Q+ D++ +++PKNIL++GPTGVGKT Sbjct: 389 PHEIVEYLNKYIIGQTEAKKVVANALRQRWRRIQVDDDMKKDIIPKNILMIGPTGVGKTE 448 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RR++ APFIKVE TKFTE+G+ G++V+QII+DLV++A+ + E+REQA Sbjct: 449 IARRISMFVDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKTKFEIEIREQAQE 508 Query: 129 NAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD--ISNFDIPGGAS 186 E IL +L+G + ++RK L+DG + DK + I++ + ++ SN + Sbjct: 509 TVENIILYSLLGNIKEE-EKNIWRKYLKDGSLDDKVVSIDIPNYVNNNIFSNDSVENAVK 567 Query: 187 VGILNLSELFS-KVMGSGRKK---KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 + N + S K++ K K M++++ +L++ E D ++ D + + +I VE Sbjct: 568 EALSNHQNIKSVKIIHQNINKQNDKKTMTIREAKQKLLQLEIDSSMNQDVILKTAISSVE 627 Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 GIVF+DE DKI ++ S NG S EGVQRDLLPL+EG ++TKYG+INT++ILFIA Sbjct: 628 EEGIVFIDEIDKICSKSNSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIA 687 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAF +P D+L E+QGR PV V+L SL DF ILT T +NL+ Q L+KTEGI L Sbjct: 688 SGAFQRVKPNDMLNELQGRLPVHVNLSSLTIKDFIEILTKTHNNLLQQNIALLKTEGIDL 747 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT+D+I+ +A+ A ++N V +IG RRL T++E+++EDI++ + KT+VID E V+ Sbjct: 748 QFTDDAIETIANAAHDMNFYVENIGVRRLHTIIEKIMEDINYDVYNYVNKTIVIDREKVK 807 Query: 421 LHIGDFPSETDMYHFIL 437 + F + D+ +I+ Sbjct: 808 KSLEGFIKQFDLKKYII 824 >gi|227893509|ref|ZP_04011314.1| ATP-dependent protease ATP-binding subunit [Lactobacillus ultunensis DSM 16047] gi|227864679|gb|EEJ72100.1| ATP-dependent protease ATP-binding subunit [Lactobacillus ultunensis DSM 16047] Length = 466 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 192/467 (41%), Positives = 291/467 (62%), Gaps = 42/467 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVRILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQREITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLADIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVSEAVRMEEKDQFARVKPQAT 124 Query: 128 INAEERILDALVGKTATSN------------------------------TREV------F 151 A ++++ L N T EV Sbjct: 125 KEANKQLVRLLAPGVKRENRENQMQQMQDMMSMLMGGGNNQNNNDQEEVTDEVRNQRMDV 184 Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 +KL G + D+E+ IEV ++ + + L+++ K +K K + Sbjct: 185 AEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V++ L+++ES +++D DT+++ +I+ +N GI+F+DE DKI+A + N VSREG Sbjct: 240 PVKEAREVLIQEESRKMVDYDTIYQRAIERTQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY LMK +GI L FT++++D +A++A ++N +IGARRL Sbjct: 360 KEDFVKILKDPQNSLLKQYVALMKADGIKLVFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV +GD D+ FIL Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEDKLGDIIMNKDLTKFIL 466 >gi|226321613|ref|ZP_03797139.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi Bol26] gi|226232802|gb|EEH31555.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi Bol26] Length = 448 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 193/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VRE A I Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|218249642|ref|YP_002374818.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi ZS7] gi|218164830|gb|ACK74891.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi ZS7] Length = 448 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 193/444 (43%), Positives = 300/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VRE A I Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVREDALI 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|15594640|ref|NP_212429.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia burgdorferi B31] gi|2688171|gb|AAC66653.1| heat shock protein (hslU) [Borrelia burgdorferi B31] Length = 455 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 18 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 77 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VR+ A + Sbjct: 78 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 137 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+D+L ++ S +E RKKLR GE+ D I+I+++ + Sbjct: 138 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 196 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 197 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 254 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 255 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 312 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 313 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 372 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 373 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 432 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 433 INLDYVNKKI-QINEQKDLNYYII 455 >gi|205355512|ref|ZP_03222283.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346746|gb|EDZ33378.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 439 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESAIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + LDF +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELDFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|195941351|ref|ZP_03086733.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi 80a] gi|216264308|ref|ZP_03436300.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 156a] gi|221217633|ref|ZP_03589101.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 72a] gi|223888752|ref|ZP_03623343.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 64b] gi|224533194|ref|ZP_03673794.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi WI91-23] gi|224533702|ref|ZP_03674290.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi CA-11.2a] gi|225549073|ref|ZP_03770048.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 94a] gi|225550095|ref|ZP_03771055.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 118a] gi|226320596|ref|ZP_03796156.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 29805] gi|3023975|sp|Q44772|HSLU_BORBU RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|1165279|gb|AAA85618.1| HsLU [Borrelia burgdorferi] gi|215980781|gb|EEC21588.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 156a] gi|221192310|gb|EEE18529.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 72a] gi|223885568|gb|EEF56667.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 64b] gi|224511921|gb|EEF82322.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi WI91-23] gi|224512995|gb|EEF83358.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi CA-11.2a] gi|225369207|gb|EEG98660.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 118a] gi|225370299|gb|EEG99737.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 94a] gi|226234015|gb|EEH32736.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi 29805] gi|312149103|gb|ADQ29174.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi N40] Length = 448 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYSTVRDDALV 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+D+L ++ S +E RKKLR GE+ D I+I+++ + Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|312148448|gb|ADQ31107.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia burgdorferi JD1] Length = 448 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+D+L ++ S +E RKKLR GE+ D I+I+++ + Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|57167683|ref|ZP_00366823.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli RM2228] gi|305433190|ref|ZP_07402346.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter coli JV20] gi|57020805|gb|EAL57469.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter coli RM2228] gi|304443891|gb|EFM36548.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter coli JV20] Length = 439 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 304/447 (68%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ + Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESVIEIEISQSMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAAEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGSSV TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY+ Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYE 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASKANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|58337282|ref|YP_193867.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus acidophilus NCFM] gi|81311472|sp|Q5FKD8|HSLU_LACAC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|58254599|gb|AAV42836.1| ATP dependant protease, ATP binding unit, heatshock protein [Lactobacillus acidophilus NCFM] Length = 466 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 42/467 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QLP ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124 Query: 128 INA--------------EER---------ILDALVG-------------KTATSNTREVF 151 A E+R ++ L+G N R Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184 Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 +KL + D+E+ IEV ++ + + L+++ K +K K + Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V++ L+++ES +L+D DT+++ +I+ +N GI+F+DE DKI+A + N VSREG Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +GI L FT++++D +A++A ++N +IGARRL Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV +GD D+ FIL Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIMNKDLTKFIL 466 >gi|227903868|ref|ZP_04021673.1| ATP-dependent protease ATP-binding subunit [Lactobacillus acidophilus ATCC 4796] gi|227868259|gb|EEJ75680.1| ATP-dependent protease ATP-binding subunit [Lactobacillus acidophilus ATCC 4796] Length = 466 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 42/467 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QLP ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQREITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124 Query: 128 INA--------------EER---------ILDALVG-------------KTATSNTREVF 151 A E+R ++ L+G N R Sbjct: 125 KEANKELVRLLAPGEKREKRENQVQQMQDMMSMLMGGMNNQTNNNQEEISEEVRNQRMDV 184 Query: 152 RKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 +KL + D+E+ IEV ++ + + L+++ K +K K + Sbjct: 185 AEKLNKDLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRTL 239 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V++ L+++ES +L+D DT+++ +I+ +N GI+F+DE DKI+A + N VSREG Sbjct: 240 PVREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSREG 299 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 VQRDILPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 359 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +GI L FT++++D +A++A ++N +IGARRL Sbjct: 360 KDDFVKILKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLS 419 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV +GD D+ FIL Sbjct: 420 TILEKLLEDVLYEGPDMEMGEITITEAYVEEKLGDIIVNKDLTKFIL 466 >gi|254556718|ref|YP_003063135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum JDM1] gi|254045645|gb|ACT62438.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum JDM1] Length = 472 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 298/469 (63%), Gaps = 36/469 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P++IV+ LD Y+IGQ AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGV Sbjct: 4 INKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++ VR Sbjct: 64 GKTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRA 123 Query: 125 QASINAEERILDALV---GKTATSNTREV-----FRKKLRDGEI------SDKEIDIEVA 170 QA A++R++ LV K A +N E ++++G+ S++E+ EV Sbjct: 124 QAVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVR 183 Query: 171 DTSSDISN---------------FDIPGGASVGILNLSELFSKVMGSG-----RKKKIR- 209 + +++ D P A+ G N+ +G KK+I+ Sbjct: 184 NQRLSVADQLKTGRLENSEVTIEMDDPQQAAAGNNNMLGQMGIDLGDSLGALMPKKRIQR 243 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 M V + L+R+ES++L++ ++ D+I EN GI+F+DE DKI VSR Sbjct: 244 TMPVSEAREILVREESEKLVNNADIYHDAIVCAENTGIIFIDEIDKITKGGQQGSGEVSR 303 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS +STKYG INTDHILFIASGAF S+P+DL+ E+QGRFP+RV L Sbjct: 304 EGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVELDD 363 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L+K DF ILT+ ++ LI QY L+ T+ I + FT ++I+A+A +A +N +IGARR Sbjct: 364 LSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGARR 423 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LE++ + D++ V I YV IG+ + D+ +IL Sbjct: 424 LHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472 >gi|225552138|ref|ZP_03773078.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1] gi|225371136|gb|EEH00566.1| heat shock protein HslVU, ATPase subunit HslU [Borrelia sp. SV1] Length = 448 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 191/444 (43%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+Y+IGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYVIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIAVNMVKEEMYSTVRDDALV 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+D+L ++ S +E RKKLR GE+ D I+I+++ + Sbjct: 131 RTEERIVDSLFKGSSNSENMDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|28378504|ref|NP_785396.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum WCFS1] gi|300767450|ref|ZP_07077362.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180661|ref|YP_003924789.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|32129621|sp|Q88W26|HSLU_LACPL RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|28271340|emb|CAD64245.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus plantarum WCFS1] gi|300495269|gb|EFK30425.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046152|gb|ADN98695.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 472 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 298/469 (63%), Gaps = 36/469 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P++IV+ LD Y+IGQ AK+AVAIALRNR+RR +L A++++E+ PKN+L++GPTGV Sbjct: 4 INKTPKQIVAALDNYVIGQNQAKKAVAIALRNRYRRMELSAEMQEEITPKNMLMIGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLVDVAI + ++ VR Sbjct: 64 GKTEIARRLAKIVHAPFVKVEATKFTEVGYVGRDVESMVRDLVDVAIEMEKQQAYSGVRA 123 Query: 125 QASINAEERILDALV---GKTATSNTREV-----FRKKLRDGEI------SDKEIDIEVA 170 QA A++R++ LV K A +N E ++++G+ S++E+ EV Sbjct: 124 QAVQAADKRLVKLLVPAQKKQAKNNGNEFQNMMNMFSQMQNGQTPNVDDSSNEEVTDEVR 183 Query: 171 DTSSDISN---------------FDIPGGASVGILNLSELFSKVMGSG-----RKKKIR- 209 + +++ D P A+ G N+ +G KK+I+ Sbjct: 184 NQRLSVADQLKTGRLENSEVTIEMDDPQQAAAGNNNMLGQMGIDLGDSLGALMPKKRIQR 243 Query: 210 -MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSR 268 M V + L+R+ES++L++ ++ D+I EN GI+F+DE DKI VSR Sbjct: 244 TMPVSEAREILVREESEKLVNNADIYHDAIVRAENTGIIFIDEIDKITKGGQQGSGEVSR 303 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKS 328 EGVQRD+LP+VEGS +STKYG INTDHILFIASGAF S+P+DL+ E+QGRFP+RV L Sbjct: 304 EGVQRDILPIVEGSQISTKYGPINTDHILFIASGAFAESKPSDLIAELQGRFPIRVELDD 363 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L+K DF ILT+ ++ LI QY L+ T+ I + FT ++I+A+A +A +N +IGARR Sbjct: 364 LSKDDFVKILTEPKNALIKQYIALIGTDNIKVTFTIEAIEAIATIAYKVNHETQNIGARR 423 Query: 389 LQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 L T++E++LE++ + D++ V I YV IG+ + D+ +IL Sbjct: 424 LHTILEKLLEELLYEGPDMEMGEVTITESYVNERIGNIAQDKDLSRYIL 472 >gi|283956076|ref|ZP_06373563.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792396|gb|EFC31178.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 439 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + LDF +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTEKLELDFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|32265808|ref|NP_859840.1| ATP-dependent protease ATP-binding subunit HslU [Helicobacter hepaticus ATCC 51449] gi|32261857|gb|AAP76906.1| ATP-dependent protease subunit HslU/ClpY [Helicobacter hepaticus ATCC 51449] Length = 444 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 193/446 (43%), Positives = 288/446 (64%), Gaps = 19/446 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P++IV LD YIIGQ DAK+AVAIALRNR+RR +L +++DE+ PKNIL++G TGVG Sbjct: 4 NMTPKQIVEYLDGYIIGQNDAKKAVAIALRNRYRRMKLDKEVQDEITPKNILMIGSTGVG 63 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++ G PF+KVE +K+TE+G+VGR+VE ++RDLV ++N+V R R Q Sbjct: 64 KTEIARRMAKMMGLPFVKVEASKYTEVGFVGRDVESMVRDLVLASVNLVENEHRQ--RAQ 121 Query: 126 ASIN------AEERILDALVGKTATSNTREV------FRKKLRDGEISDKEIDIEVADTS 173 A IN +++L L + + E ++++ GE+ D I+IE+ + Sbjct: 122 AQINDYIIEKITQKLLPPLPSGVSEAKKSEYDMSFTKMKQRVIKGEVDDLMIEIEI--SK 179 Query: 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDMDT 232 IS F+ ++ + E KV+ + K K MSV++ L + + ++D ++ Sbjct: 180 KPISQFN-DENMPPDMIKVQESIFKVLNVSQDKIKKEMSVKEAKEALAYEAIESVLDAES 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + + ++ + G++F+DE DK+ V G+ S+EGVQRDLLP+VEGS V+TKYG I Sbjct: 239 IRAEGLRRAQENGVIFIDEIDKVAVGSKDGSRQDPSKEGVQRDLLPIVEGSVVNTKYGQI 298 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TD+ILFIA+GAFH+S+P+DL+PE+QGRFP+RV L L++ ILT T+S+L+ QY+ Sbjct: 299 KTDYILFIAAGAFHLSKPSDLIPELQGRFPLRVELSMLDEESLYQILTQTKSSLLRQYQL 358 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ TE I L+F++++I LA ++ N N DIGARRL T +ERVLEDISF + K Sbjct: 359 LLDTEDIRLEFSDEAIRELARLSHNANQRTEDIGARRLHTTIERVLEDISFDVDTYKGKE 418 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V I + VR +GD D+ +IL Sbjct: 419 VEITGDMVRERLGDLVENIDLARYIL 444 >gi|284925920|gb|ADC28272.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter jejuni subsp. jejuni IA3902] Length = 439 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 303/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|57236972|ref|YP_178773.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni RM1221] gi|62286707|sp|Q5HVB2|HSLU_CAMJR RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|57165776|gb|AAW34555.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni RM1221] gi|315058077|gb|ADT72406.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter jejuni subsp. jejuni S3] Length = 439 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 301/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G + + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|86151777|ref|ZP_01069991.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 260.94] gi|85841406|gb|EAQ58654.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 260.94] Length = 439 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNHQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|227524591|ref|ZP_03954640.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii ATCC 8290] gi|227088266|gb|EEI23578.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii ATCC 8290] Length = 481 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV LD+YI+GQ +AK+AVA+ALRNR+RR QL ++DE+ PKN+L++GPTGVGKT Sbjct: 19 TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R +VR A Sbjct: 79 EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRNDAE 138 Query: 128 INAEERILDALV------------------------GKTATSN------------TREVF 151 A +++ LV G+ + N R Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209 KLR G + ++E++IE+ D S S + +GI +L++ S +M KKKI+ Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIKRT 253 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V + L+R S+ L++ ++ ++I EN GI+F+DE DKI + N VSRE Sbjct: 254 VPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSRE 313 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF S+P+DL+PE+QGRFP+RV L L Sbjct: 314 GVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDL 373 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 +K DF ILT+ ++L QY L+ T+ I + FT ++I+ +A++A +N +IGARRL Sbjct: 374 SKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRL 433 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI + D+Q + I +YV +G D+ +IL Sbjct: 434 HTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481 >gi|315453297|ref|YP_004073567.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179] gi|315132349|emb|CBY82977.1| ATP dependent-heat shock protein [Helicobacter felis ATCC 49179] Length = 442 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 191/447 (42%), Positives = 285/447 (63%), Gaps = 17/447 (3%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +P+EIV LD YII Q+DAK+ +AIALRNRWRR QLP +L++E+ PKNIL++G T Sbjct: 1 MKLEMTPQEIVDYLDDYIIEQKDAKKMIAIALRNRWRRLQLPKELQEEVTPKNILMIGST 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT I+RR+A++ G PFIKVE +K+TE+G+VGR+VE ++RDLV +IN+V ++ Sbjct: 61 GVGKTEIARRMAKMMGLPFIKVEASKYTEVGFVGRDVESMVRDLVATSINLVENEHKERN 120 Query: 123 REQASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 RE+ ERI L+ K ++ E ++K++ G + +I+IE+ Sbjct: 121 REKIEELIVERIAKKLLPALPNGVSETKKEEYASNFEKTKEKIKSGALDHVQIEIELRKK 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMG-SGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 + +F++P I+ + E KV+ G K MS+++ L D S ++DM+ Sbjct: 181 HLE-GDFNVPPE----IIKVQESLIKVLNREGEKVSKEMSIKEAKEALRHDVSQTILDME 235 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 V + ++ G++F+DE DKI V G+ S+EGVQRDLLP+VEGS ++TKYG Sbjct: 236 RVQAEGVERAMQSGVIFIDEIDKIAVGVKEGSRQDPSKEGVQRDLLPIVEGSVINTKYGP 295 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAF +S+P+DL+PE+QGRFP+RV L+SL++ ILT T+S++I QY+ Sbjct: 296 VATDHILFIAAGAFQLSKPSDLIPELQGRFPLRVELESLSEEIMFAILTRTKSSIIKQYQ 355 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ EG+ L F +++ LA ++ N DIGARRL T +E+VLED+SF+AS + + Sbjct: 356 ALLSVEGVELVFDPEALRELARLSYLANQNAEDIGARRLHTTIEKVLEDLSFNASSYKGQ 415 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+I E V + + D FIL Sbjct: 416 QVLITKENVAKKLENLVDNVDRARFIL 442 >gi|51598555|ref|YP_072743.1| ATP-dependent protease ATP-binding subunit HslU [Borrelia garinii PBi] gi|51573126|gb|AAU07151.1| heat shock protein [Borrelia garinii PBi] Length = 448 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 190/444 (42%), Positives = 301/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVLELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ +A+N+V+E + VR+ A + Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMSIAVNMVKEEMYNTVRDDALV 130 Query: 129 NAEERILDALVGKTATS------------NTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + S +E RKKLR GE+ + I+I+++ + Sbjct: 131 KTEERIVESLFKGSGNSENVDPNEIKAEEKVKEKLRKKLRAGELDNTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP+++GS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGND--VSREGVQRDILPIMKGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VMERVL D+ F + K Sbjct: 366 KVYNLDLKFSEEAIDRIAELTFNMNLENENLGARRLHGVMERVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|260101611|ref|ZP_05751848.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075] gi|260084574|gb|EEW68694.1| heat shock protein HslVU [Lactobacillus helveticus DSM 20075] Length = 467 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 192/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124 Query: 128 INAEERILDALV------------------------GKTATS-------------NTREV 150 A ++++ L G + N R Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184 Query: 151 FRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+E+ IEV ++ + + LS++ K +K K Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLSDIMPK-----KKVKRT 239 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV+ L+++ES +++D DT+++ +I+ +N GI+F+DE DKI+A + N VSRE Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 K DF IL D +++L+ QY LMK +GI L FT++++D +A +A ++N +IGARRL Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV + D D+ FIL Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467 >gi|86149872|ref|ZP_01068101.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153464|ref|ZP_01071668.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597123|ref|ZP_01100359.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 84-25] gi|218562307|ref|YP_002344086.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124171|ref|YP_004066175.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|11133091|sp|Q9PHL0|HSLU_CAMJE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|85839690|gb|EAQ56950.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843190|gb|EAQ60401.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190812|gb|EAQ94785.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 84-25] gi|112360013|emb|CAL34803.1| ATP-dependent Hsl protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315017893|gb|ADT65986.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315926779|gb|EFV06153.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 439 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 302/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|66805881|ref|XP_636662.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4] gi|60465050|gb|EAL63156.1| hypothetical protein DDB_G0288593 [Dictyostelium discoideum AX4] Length = 694 Score = 352 bits (903), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 196/445 (44%), Positives = 293/445 (65%), Gaps = 30/445 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N PR+IVS LD Y+IGQ DAKRA++IALRNRWRR++L A ++ ++ PKNIL++GPTGVG Sbjct: 267 NLLPRDIVSGLDEYVIGQSDAKRAISIALRNRWRRKRLDASMKPDVYPKNILMIGPTGVG 326 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ++RRLA++ APF+KVE TK+TE+G+ G +V+ IIRDL++ +I+ ++ + + Sbjct: 327 KTELARRLAKIINAPFVKVEATKYTEVGFHGPDVDTIIRDLIEASISNIKTKIANSHKAS 386 Query: 126 ASINAEERILDALVG--KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 + E+ ++ +L+G ++ T E KK R+G++ EI+IEV+ S Sbjct: 387 IEADVEKNVISSLIGLQNDLSAITIEELLKKYREGQLDSVEIEIEVSSDSK--------- 437 Query: 184 GASVGIL---NLSELFSKVMGSGRK-KKIRMS-VQKCYPELMRDESDRLIDMDTVHRD-- 236 S+G N+++L S + K KK+ ++ ++ + + RD + TV +D Sbjct: 438 -GSLGQAYDENIAKLLSAIDKQPSKIKKVTIAEAKEIFEKQYRD-------LYTVSQDVT 489 Query: 237 --SIQMVENYGIVFLDEFDKIV-ARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 +IQ E GIVFLDE DKI +R+S NG S +GVQRDLLP+VEG VSTKYG I+ Sbjct: 490 KLAIQSAEQNGIVFLDEIDKICTSRESIKNGGDASTDGVQRDLLPIVEGCMVSTKYGQID 549 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 T ILFIASGAFH ++P+DL+ E+QGR P+RV LK L + DF ILT+ ++N I Q K L Sbjct: 550 TSRILFIASGAFHNTKPSDLISELQGRLPIRVELKPLEQKDFYKILTEPKNNQIQQQKAL 609 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +KTE I L+FT+D++ +A +A N+ V ++GARRL ++ER++EDISF+ + KTV Sbjct: 610 LKTEDIQLEFTDDALLEVAKIAFEANAQVQNLGARRLHGIIERIVEDISFNCDIHKGKTV 669 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 V+D +R H+ + +TD+ +I+ Sbjct: 670 VLDTPDIRKHLSELLFKTDLSKYII 694 >gi|229824240|ref|ZP_04450309.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271] gi|229786594|gb|EEP22708.1| hypothetical protein GCWU000282_01544 [Catonella morbi ATCC 51271] Length = 485 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 200/467 (42%), Positives = 299/467 (64%), Gaps = 42/467 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PR +V+EL++YIIGQ +AKRA+AIALRNR RR +L ++ E+ PKNIL++GPTGVG Sbjct: 26 QLTPRYVVNELNKYIIGQDEAKRAIAIALRNRLRRLKLEPAMQAEVKPKNILMIGPTGVG 85 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA +A APF+KVE TK+TEIGYVGR+VE ++RDLV+ +I +V++ + EVRE+ Sbjct: 86 KTEIARRLAEIANAPFVKVEATKYTEIGYVGRDVEAMVRDLVEASIRMVKKIKHQEVREE 145 Query: 126 ASINAEERILDALV-------GKTATSN--------------------------TREVFR 152 A A R+ AL + A N +R + Sbjct: 146 AYERALTRLAKALKPGIKQEKKQQAQPNDFMAMLQQMTQSQEEPQEVVTDDIKVSRRQIK 205 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 ++LR G I+DKE+ IE+ + ++N + + + ++ S+ KKKI+ SV Sbjct: 206 EQLRQGLINDKEVTIELEEKKLQLNNLN------PMMEQMMDVQSEFQNLRPKKKIKRSV 259 Query: 213 --QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 ++ L +ESD L++ D +++ ++++ +N GI+F+DE DKI A S +G VSR+G Sbjct: 260 TVKEALELLTEEESDHLVNQDDINQQALELAQNSGIIFIDEIDKI-ATSSNHGGEVSRQG 318 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS + TKYG I+TDHILFI SGAFHV++P+DL+PE+QGRFP+RV L L Sbjct: 319 VQRDILPIVEGSDIQTKYGIISTDHILFIGSGAFHVAKPSDLIPELQGRFPIRVQLTDLK 378 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DFR IL + ++ QY+ ++ TEG+ + FT+ +ID +A+ AV LN + +IGARRL Sbjct: 379 VDDFRRILQEPAHAILHQYQAMLATEGVEVIFTDSAIDKMAEYAVLLNESTDNIGARRLH 438 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E VLE++ + A+D+ + I+ YV + D+ H+IL Sbjct: 439 TIVETVLEELLYEAADMNMGRIEINGAYVSQRLDKIVESPDLSHYIL 485 >gi|1196314|gb|AAB51406.1| heat shock response protein [Borrelia burgdorferi] gi|1234880|emb|CAA65468.1| heat shock protein [Borrelia burgdorferi] Length = 448 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 192/444 (43%), Positives = 299/444 (67%), Gaps = 21/444 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+++V+ELD+YIIGQ +AK+ V+IAL NR+ R +LP +++DE+MPKNI+++G TG+GKT Sbjct: 11 PKDVVAELDKYIIGQDEAKKLVSIALVNRYIRSRLPKEIKDEVMPKNIIMIGSTGIGKTE 70 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASI 128 I+RRL++L APFIKVE TK+TE+GYVGR+VE ++RDL+ + +N+V+E VRE A I Sbjct: 71 IARRLSKLIKAPFIKVEATKYTEVGYVGRDVESMVRDLMGIRVNMVKEEMYSTVREDALI 130 Query: 129 NAEERILDALVGKT------------ATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 EERI+++L + A +E RKKLR GE+ D I+I+++ + Sbjct: 131 KTEERIVESLFKGSDNSENIDPNEIKAEEKVKEKLRKKLRAGELDDTTIEIQIS-SKMPF 189 Query: 177 SNFDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 S +I G + +++ ++G+ RKKK + ++K ++ +E ++L+D + + Sbjct: 190 STIEIFTGGNFEEIDMG--IGGLLGNIFDRKKKRELKIKKAKEIILAEELEKLVDHENIS 247 Query: 235 RDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 + VEN GI+F+DE DKI A++ SGN VSREGVQRD+LP++EGS V+TKYG ++T Sbjct: 248 DIAKSKVENMGIIFIDEIDKIAAKNRSGN--DVSREGVQRDILPIIEGSKVNTKYGIVDT 305 Query: 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 HILFIA+GAF++++P+DL+PE+QGRFP++V LKSL+ D + IL T+++LI QY + Sbjct: 306 SHILFIAAGAFNLAKPSDLIPELQGRFPIKVELKSLSIDDLKKILKQTKNSLIKQYVAMF 365 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 K + L F+E++ID +A++ N+N ++GARRL VME VL D+ F + K Sbjct: 366 KVYDLDLKFSEEAIDRIAELTFNMNLESENLGARRLHGVMEIVLADLFFEVPGSKLKKFE 425 Query: 414 IDAEYVRLHIGDFPSETDMYHFIL 437 I+ +YV I + D+ ++I+ Sbjct: 426 INLDYVNKKI-QINEQKDLNYYII 448 >gi|121612676|ref|YP_001000362.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter jejuni subsp. jejuni 81-176] gi|167005308|ref|ZP_02271066.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|166221474|sp|A1VZ21|HSLU_CAMJJ RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|87249356|gb|EAQ72316.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 81-176] Length = 439 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 301/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G + + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGNLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|227510440|ref|ZP_03940489.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190092|gb|EEI70159.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 481 Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 196/468 (41%), Positives = 289/468 (61%), Gaps = 43/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV LD+YI+GQ +AK+AVA+ALRNR+RR QL ++DE+ PKN+L++GPTGVGKT Sbjct: 19 TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R +VR A Sbjct: 79 EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138 Query: 128 INAEERILDALV------------------------GKTATSN------------TREVF 151 A +++ LV G+ + N R Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENDDQEEVTDDIREKRMSV 198 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR-- 209 KLR G + ++E++IE+ D S S + +GI +L++ S +M KKKI+ Sbjct: 199 SDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIKRT 253 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 + V + L+R S+ L++ ++ ++I EN GI+F+DE DKI + N VSRE Sbjct: 254 VPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVSRE 313 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF S+P+DL+PE+QGRFP+RV L L Sbjct: 314 GVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELDDL 373 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 +K DF ILT+ ++L QY L+ T+ I + FT ++I+ +A++A +N +IGARRL Sbjct: 374 SKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGARRL 433 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LEDI + D+Q + I +YV +G D+ +IL Sbjct: 434 HTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 481 >gi|323466638|gb|ADX70325.1| ATP-dependent protease ATPase subunit HslU [Lactobacillus helveticus H10] Length = 467 Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 193/468 (41%), Positives = 292/468 (62%), Gaps = 43/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124 Query: 128 INAEERILDALV-----------------------GKTATSN--------TREVFRK--- 153 A ++++ L G +N T EV ++ Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRKERMD 184 Query: 154 ---KLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 KL G + D+E+ IEV ++ + + L+++ K +K K Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV+ L+++ES +++D DT+++ +I+ +N GI+F+DE DKI+A + N VSRE Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 K DF IL D +++L+ QY LMK +GI L FT++++D +A +A ++N +IGARRL Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV + D D+ FIL Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467 >gi|227513449|ref|ZP_03943498.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri ATCC 11577] gi|227083322|gb|EEI18634.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri ATCC 11577] Length = 483 Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 196/470 (41%), Positives = 289/470 (61%), Gaps = 45/470 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV LD+YI+GQ +AK+AVA+ALRNR+RR QL ++DE+ PKN+L++GPTGVGKT Sbjct: 19 TPKEIVEVLDQYIVGQNEAKKAVAVALRNRYRRMQLSKSMQDEISPKNLLMIGPTGVGKT 78 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVG +VE ++RDLV+ A+ + R +VR A Sbjct: 79 EIARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRDLVENAVLLERNDEYKDVRTDAE 138 Query: 128 INAEERILDALV------------------------GKTATSN--------------TRE 149 A +++ LV G+ + N R Sbjct: 139 KQANNQLVKLLVPTQKKKNRQNDMQNLMNMFTQMQNGQMPSENENDDQEEVTDDIREKRM 198 Query: 150 VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 KLR G + ++E++IE+ D S S + +GI +L++ S +M KKKI+ Sbjct: 199 SVSDKLRAGLLENEEVEIEMDDPSQQASGQN-SMMNQMGI-DLNDTLSGLMP---KKKIK 253 Query: 210 --MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 + V + L+R S+ L++ ++ ++I EN GI+F+DE DKI + N VS Sbjct: 254 RTVPVSEAREILIRQASEDLVNKADLYHNAIIRAENTGIIFIDEIDKIAPGKAQNSGEVS 313 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 REGVQRD+LP+VEGS V+TKYG +NTDH+LFI SGAF S+P+DL+PE+QGRFP+RV L Sbjct: 314 REGVQRDILPIVEGSQVNTKYGPVNTDHMLFIGSGAFAESKPSDLIPELQGRFPIRVELD 373 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L+K DF ILT+ ++L QY L+ T+ I + FT ++I+ +A++A +N +IGAR Sbjct: 374 DLSKDDFVKILTEPTNSLTKQYIALIGTDNIKVTFTIEAINRIAEIATEVNHNTDNIGAR 433 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL T++E++LEDI + D+Q + I +YV +G D+ +IL Sbjct: 434 RLHTILEKLLEDILYEGPDMQMGDITITEKYVDDKVGKLAGNKDLSRYIL 483 >gi|157414938|ref|YP_001482194.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni 81116] gi|172047095|sp|A8FL80|HSLU_CAMJ8 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|157385902|gb|ABV52217.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747577|gb|ADN90847.1| ATP-dependent hsl protease ATP-binding subunit hslU [Campylobacter jejuni subsp. jejuni M1] gi|315931859|gb|EFV10814.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 327] Length = 439 Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 302/447 (67%), Gaps = 22/447 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS++ TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNIQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V +GD D+ +IL Sbjct: 413 KFVVDKKMVEEKLGDIIENKDLARYIL 439 >gi|254459110|ref|ZP_05072533.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales bacterium GD 1] gi|207084381|gb|EDZ61670.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacterales bacterium GD 1] Length = 442 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 188/446 (42%), Positives = 298/446 (66%), Gaps = 17/446 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LDRY+I Q+DAK+ +A+ALR R+RR QL +L++E+MPKNIL++G TGV Sbjct: 1 MNLTPKEIVEYLDRYVISQKDAKKTIALALRTRYRRMQLSQELQNEIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT ISRRLA++ PFIKVE +K+TE+G+VGR+VE +IRDLV +I+IV++ + + +E Sbjct: 61 GKTEISRRLAKMLSVPFIKVEASKYTEVGFVGRDVESMIRDLVVASISIVKKEKEEANKE 120 Query: 125 QASINAEERILDALVGKT---ATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174 + +I++ L+ A+ + ++ +++ ++ +GE+ D+ I+++ Sbjct: 121 KIDNYILNKIVEKLLPPLPDGASESKKDDYQRLLGAMEERVINGEMDDRVIELQFDKVHL 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232 + ++ ++P + + E FSK+ + K+ K ++V+ L + S +L+DM Sbjct: 181 EFNDTNLPPEMA----KVQESFSKIFETMNKEDNKKEVTVKDAKSILRVEASHKLLDMTN 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSI 291 ++ ++++ E+ GI+FLDE DKI + G S+EGVQRDLLP+VEGSSV+TKYG I Sbjct: 237 INTEALKRAEDGGIIFLDEIDKIAVSEKSQGRNDPSKEGVQRDLLPIVEGSSVTTKYGVI 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 NTDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+SL + ILT TE++L+ QY+ Sbjct: 297 NTDHILFIAAGAFHITKPSDLIPELQGRFPLRVELESLTEDTLYKILTQTENSLLKQYEA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L+ EG+ L F +++I A+A ++ N DIGARRL TV+ERVLE+ISF A + + + Sbjct: 357 LLSVEGVKLIFEDEAIKAIAKLSHKANEMTEDIGARRLHTVLERVLEEISFEADEHRGQE 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ +E V + D+ +IL Sbjct: 417 FIVKSELVHEKLDLVVENDDLSRYIL 442 >gi|161507476|ref|YP_001577430.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus helveticus DPC 4571] gi|172048284|sp|A8YV51|HSLU_LACH4 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|112148388|gb|ABI13541.1| ATP-dependent protease Hs IVU ATPase subunit-like protein [Lactobacillus helveticus CNRZ32] gi|160348465|gb|ABX27139.1| ATP dependant protease ATP-binding subunit [Lactobacillus helveticus DPC 4571] Length = 467 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 191/468 (40%), Positives = 289/468 (61%), Gaps = 43/468 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AK++VAIAL NR+RR QL ++ E+ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLSKQMQHEITPKNLLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ QA+ Sbjct: 65 EIARRLASIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEAVRMEEKDQFARVKPQAT 124 Query: 128 INAEERILDALV------------------------GKTATS-------------NTREV 150 A ++++ L G + N R Sbjct: 125 KEANKQLVRLLAPGVKREKRENQMQQMQDMMSMLMGGANPNNQNNDQEEVTDEVRNERMD 184 Query: 151 FRKKLRDGEISDKEIDIEVADT-SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+E+ IEV ++ + + L+++ K +K K Sbjct: 185 VAEKLNKGLLEDREVTIEVEQAPKANPMSDMMGQMGMDMGSMLNDIMPK-----KKVKRT 239 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 +SV+ L+++ES +++D DT+++ +I+ +N GI+F+DE DKI+A + N VSRE Sbjct: 240 LSVRDAREVLIQEESRKMVDYDTIYQRAIERSQNNGIIFIDEIDKIIAGNKRNSGEVSRE 299 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS+V+TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 300 GVQRDVLPIVEGSTVNTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNAL 359 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 K DF IL D +++L+ QY LMK +GI L FT++++D +A +A ++N +IGARRL Sbjct: 360 TKDDFVKILKDPQNSLLKQYIALMKADGIKLIFTQEAVDKIAQIAFDVNQGTDNIGARRL 419 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ + D++ + I YV + D D+ FIL Sbjct: 420 STILEKLLEDVLYEGPDMEMGEITITEAYVEEKLHDIIMNKDLTKFIL 467 >gi|328875240|gb|EGG23605.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum] Length = 1249 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 190/433 (43%), Positives = 289/433 (66%), Gaps = 14/433 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSELD+YIIGQ +AKRAV+IALRNRWRR++L A ++ ++ PKNIL++GPTGVGK Sbjct: 187 LTPKEIVSELDKYIIGQAEAKRAVSIALRNRWRRKRLDASIKQDVFPKNILMIGPTGVGK 246 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA + APFIKVE TK+TE+G+ G +V+ IIRDL++V+I+ +++ + +E Sbjct: 247 TEIARRLANIVNAPFIKVEATKYTEVGFHGPDVDSIIRDLIEVSIHNIKQKIANLHKETI 306 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD----IP 182 + E+ I+ +LVG + + E K R+ + + +I+++V ++ D IP Sbjct: 307 DMEIEKEIISSLVGPDFLNRSYEDLVKLYREKALENIQIELDVPSSTDTKLQLDDENLIP 366 Query: 183 GGASVGILNLSELFS-KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 +S+LF+ +V S + KK ++V + L + + ++LI V + +IQ Sbjct: 367 -------FAVSKLFNVQVDKSNQIKKRIVTVSEARTILEKIQKEKLIVQQDVTKLAIQSA 419 Query: 242 ENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVFLDE DKI ++ G S +GVQRDLLP++EG +V+TKYG I+T ILFI Sbjct: 420 EQNGIVFLDEIDKICTPKENTHRGGDASTDGVQRDLLPIIEGCNVNTKYGMIDTSRILFI 479 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH S+P+DL+ E+QGR P+RV LK L+++DF ILT+ ++N I Q K L++TE I Sbjct: 480 ASGAFHSSKPSDLISELQGRLPIRVELKPLDQNDFYRILTEPKNNQIEQQKALLQTEDIT 539 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L+FT DS+ ++ +A + N+ V +IGARRL ++E+++E+ SF+ D + KTV I + V Sbjct: 540 LEFTIDSLREVSRIAFDANAQVQNIGARRLHGIIEKIVEEYSFNCDDHKGKTVTITEDSV 599 Query: 420 RLHIGDFPSETDM 432 + H+ +TD Sbjct: 600 KKHLSQLLFKTDF 612 >gi|315639032|ref|ZP_07894202.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter upsaliensis JV21] gi|315480944|gb|EFU71578.1| ATP-dependent hsl protease ATP-binding subunit HslU [Campylobacter upsaliensis JV21] Length = 439 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 298/445 (66%), Gaps = 18/445 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR +L +L+D++MPKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMKLSPELQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E++IL+ L+ + N+ E R KL++G++ + I++E++ Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQNSLEKMRTKLKNGDLDESVIELEISQNMF 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233 D +N ++P S + KV+G G KK + K ++ E SD+++D + + Sbjct: 181 D-TNPNLPPEMSA-----MQDMVKVIGVGSKKVKKEMKIKDAKNTLKSEASDKILDTENI 234 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 ++++ VEN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGSSV TK G + Sbjct: 235 KSEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVK 294 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY EL Sbjct: 295 TDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYVEL 354 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K+ Sbjct: 355 LKTEDLSLEFDDEAIRQIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGKSF 414 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V + D+ +IL Sbjct: 415 VVDKKMVEEKLSSIVENKDLARYIL 439 >gi|152993266|ref|YP_001358987.1| ATP-dependent protease ATP-binding subunit HslU [Sulfurovum sp. NBC37-1] gi|151425127|dbj|BAF72630.1| ATP-dependent protease HslVU, ATPase subunit HslU [Sulfurovum sp. NBC37-1] Length = 442 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 190/446 (42%), Positives = 282/446 (63%), Gaps = 20/446 (4%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P+EIV LD Y+IGQ DAK+ +A+ALRNR+RR QL +++ ++ PKNIL++G TGVG Sbjct: 3 NLTPKEIVVHLDNYVIGQDDAKKTIAVALRNRYRRMQLDHEMQQDVTPKNILMIGSTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ PFIKVE +K+TE+G+VGR+VE +IRDL A+ IVRES ++ E+ Sbjct: 63 KTEIARRLAKMMNLPFIKVEASKYTEVGFVGRDVESMIRDLAATAMGIVRESENEKNAEK 122 Query: 126 ASINAEERILDALVGKTATSNTREV----------FRKKLRDGEISDKEIDIEVADTSSD 175 E +I++ L+ + + ++K GE+ +I + + + Sbjct: 123 IENYIENKIIEKLLPPLPAGASEQKQAEYDASFARMQEKFAKGELDHLKIKVTMPN---- 178 Query: 176 ISNFDIPG-GASVGILNLSELFSKVMGSGRKK--KIRMSVQKCYPELMRDESDRLIDMDT 232 N +P G ++ + E KV+G KK + ++V++ L ++ S+ L+D + Sbjct: 179 --NPQMPEEGLPPQMIQVQESIVKVLGGMGKKGPEKEVTVKEAKKILAQEASETLLDEEQ 236 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSI 291 + +++ VE GIVFLDE DKI + G S+EGVQRDLLP+VEGS+V TK G + Sbjct: 237 LKELALEKVEKGGIVFLDEVDKIAVPSNSQGRQDPSKEGVQRDLLPIVEGSTVVTKLGQV 296 Query: 292 NTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SLN+ ILT+ + +L+ QY+ Sbjct: 297 KTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLNEEALYRILTEPKHSLVKQYQA 356 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 LM EG+ L F E ++ A+A ++ N DIGARRL TVME++LE+ISF+A + + Sbjct: 357 LMAVEGVELVFEESALHAIAHYSLMANEKTEDIGARRLHTVMEKILEEISFTADEHVGEK 416 Query: 412 VVIDAEYVRLHIGDFPSETDMYHFIL 437 V ID V+ IG + D +IL Sbjct: 417 VTIDEALVKEKIGQVVEDEDTTRYIL 442 >gi|323339876|ref|ZP_08080145.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus ruminis ATCC 25644] gi|323092749|gb|EFZ35352.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 197/475 (41%), Positives = 300/475 (63%), Gaps = 54/475 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV+ELD+Y++GQ AK+AVAIALRNR+RR QL D+++E+ PKN++++GPTGVGKT Sbjct: 26 TPKEIVAELDKYVVGQAKAKKAVAIALRNRYRRMQLSEDMQEEITPKNMMMIGPTGVGKT 85 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APFIKVE TKFTE+GYVGR+VE ++RDLV+V+ + + VR +A Sbjct: 86 EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVEVSYKMEEDEMFKNVRAEAV 145 Query: 128 INAEERILDALV---GKTATSNTREVFRK------------------------------- 153 A++R++ LV K + ++ F K Sbjct: 146 AKADKRLVKLLVPAQKKQEKMSQQQAFSKMMSDLQSGNYANLFNQQEEPEDVTDEIADKR 205 Query: 154 -----KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL-----NLSELFSKVMGSG 203 KLR G + ++EI +++ + SS P GA+ G+L +LS+ +++ + Sbjct: 206 MSVAEKLRQGYLENEEITLQMDEPSS-------PSGAADGMLGQMGVDLSDALAQI--TP 256 Query: 204 RKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 +KK R ++V++ L+R+ES +L++ + +I+ EN GI+F+DE DKI ++ N Sbjct: 257 KKKITRTVTVKEAREILVREESAKLVNSWDIADAAIKRAENTGIIFIDEIDKITSKSKQN 316 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 VSREGVQRD+LP+VEGSS+ TKYG I TDHILFIASGAF S+P+DL+ E+QGRFP+ Sbjct: 317 SGEVSREGVQRDILPIVEGSSIKTKYGMIKTDHILFIASGAFAESKPSDLIAELQGRFPI 376 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV L L K DF ILT+ ++ L+ QY L+ T+ + + FT+++I+ +A++A +N Sbjct: 377 RVELDDLQKEDFVRILTEPKNALVKQYIALIGTDNVSVTFTKEAIEKIAEIACKVNHETE 436 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E++LED+ F D+ + I YV +G + D+ +IL Sbjct: 437 NIGARRLHTILEKLLEDLLFEGPDMHMGEITITEAYVEDKVGSIVDDRDLSQYIL 491 >gi|260583820|ref|ZP_05851568.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella elegans ATCC 700633] gi|260158446|gb|EEW93514.1| ATP-dependent protease HslVU, ATPase subunit [Granulicatella elegans ATCC 700633] Length = 468 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 200/475 (42%), Positives = 308/475 (64%), Gaps = 45/475 (9%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M + +PRE+V ELD++I+GQ AKRA+A+ALRNR+RR L +++ E+ PKN+L++G Sbjct: 1 MNSKISKTPREVVQELDQFIVGQASAKRALAVALRNRYRRLLLDEEMQKEVTPKNLLMIG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT ++RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDLV+ AI+IV++ +++ Sbjct: 61 PTGVGKTELARRLAKLVDAPFVKVEATKFTEVGYVGRDVESMVRDLVENAISIVQKQKQE 120 Query: 121 EVREQASINAEERILDAL----VGKTAT-------------------------------- 144 +VR QA A ++ L + K A Sbjct: 121 DVRPQAYDKAVRKLAKILKPGIMKKVANPQQDSLMNLFQSMGLPKTDLPQEEKEEVTEEI 180 Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV--MGS 202 + +R ++LR+G + ++E+ IEV + ++ G S G+ + ++ S + M Sbjct: 181 AASRREIEQQLRNGLLKNQEVTIEVEEKPLRMA------GNSNGMEQMMQIQSMLDQMTP 234 Query: 203 GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 ++ K +SV++ L E+D+L++ D VH +++++ E GI+F+DE DKI A+ N Sbjct: 235 KKRSKRTVSVEEALDILTEQEADQLVNKDDVHAEALKLAETSGIIFIDEIDKIAAK-GHN 293 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 G VSREGVQRD+LP+VEGS V TKYG+I TDHILFIASGAFHV++P+DL+PE+QGRFP+ Sbjct: 294 GGEVSREGVQRDILPIVEGSQVQTKYGAIQTDHILFIASGAFHVAKPSDLMPELQGRFPI 353 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV L+ L+K DF ILT+ ++ L+ QYK L+ TE + + FT++++ ALA A +NS + Sbjct: 354 RVELQDLSKEDFERILTEPKNALLKQYKALLATENVEVIFTKEAVSALARTAFEVNSNME 413 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E +LE++ F A +Q ++ I +YV + ++ D+ +IL Sbjct: 414 NIGARRLHTILETLLEELLFEAPQMQMGSIQITEQYVDSKLNTITADRDLSRYIL 468 >gi|257468124|ref|ZP_05632220.1| ATP-dependent protease ATP-binding subunit HslU [Fusobacterium ulcerans ATCC 49185] gi|317062409|ref|ZP_07926894.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185] gi|313688085|gb|EFS24920.1| chaperone HslU [Fusobacterium ulcerans ATCC 49185] Length = 438 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 191/437 (43%), Positives = 289/437 (66%), Gaps = 9/437 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65 +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ + +LR E+ PKNI+L+GPTGVG Sbjct: 5 LTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRREITPKNIILIGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL + ++E + +E+RE+ Sbjct: 65 KTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNELREE 124 Query: 126 ASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 A A E+ LV + N E + + + +G+ D E++IE D+ ++ Sbjct: 125 AYETALEKAA-KLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIERTKRDLDLPIIEVVS 183 Query: 184 GASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G+ + + +VM SG+ KK+ +V+ +M +E ++ +D+D+++ + I V Sbjct: 184 GSD-DTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMMDEEVEKKLDLDSLNEEVIDNV 242 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 EN GI+F+DE DKI RD G G G VSR+GVQRD+LP+VEGS+V TK+G + TDHILFIA Sbjct: 243 ENNGIIFIDEIDKIAERD-GVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILFIA 301 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAF S P+DL+PE+QGRFP+RV LK+L K DF ILT+ E NL+ QY ++ T+ + L Sbjct: 302 AGAFTQSSPSDLMPELQGRFPIRVKLKNLEKEDFVKILTEVEYNLLDQYTAMLATDNVEL 361 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT+ +I+ +AD+ N V +IGARRL V+E +L ++ + A ++K V IDA +V+ Sbjct: 362 TFTKGAIEKIADITAAANEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANFVK 421 Query: 421 LHIGDFPSETDMYHFIL 437 E ++ +IL Sbjct: 422 KVFKKENEEENLDKYIL 438 >gi|253583585|ref|ZP_04860783.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725] gi|251834157|gb|EES62720.1| heat shock protein HslVU [Fusobacterium varium ATCC 27725] Length = 438 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 190/437 (43%), Positives = 290/437 (66%), Gaps = 9/437 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65 +P+ IV EL++YII Q +AK+ VAI+LRNR RR+ + +LR E+ PKNI+L+GPTGVG Sbjct: 5 LTPKRIVEELNKYIISQDEAKKNVAISLRNRDRRKSIEDEELRKEITPKNIILMGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DL + ++E + +E+RE+ Sbjct: 65 KTEIARRIAKIADAPFLKVEATKYTEVGYVGKDVESIIKDLTSLTYRKMKEQKFNELREE 124 Query: 126 ASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 A A E+ LV + N E + + + +G+ D E++IE D+ ++ Sbjct: 125 AYETALEKAA-KLVKPYDSLNDEEKAQIMQDIDEGKYDDTEVEIEKTRKDLDLPIIEVVS 183 Query: 184 GASVGILNLSELFSKVMG--SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 G + + +VM SG+ KK+ +V+ ++ +E ++ +D+D+++ + I+ V Sbjct: 184 GND-DTSGIGSILDQVMAGVSGKSKKMITTVKNAIGIMIDEEVEKKLDLDSLNEEVIENV 242 Query: 242 ENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 EN GI+F+DE DKI RD G G G VSR+GVQRD+LP+VEGS+V TK+G + TDHILFIA Sbjct: 243 ENNGIIFIDEIDKIAERD-GVGKGEVSRQGVQRDILPIVEGSTVMTKFGPVKTDHILFIA 301 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAF S P+DL+PE+QGRFP+RV LK+L + DF ILTD E NL+ QY ++ T+ + L Sbjct: 302 AGAFTQSSPSDLMPELQGRFPIRVKLKNLEREDFVKILTDVEYNLLDQYTAMLATDNVEL 361 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 FT+ +I+ +AD+ +N V +IGARRL V+E +L ++ + A ++K V IDA +V+ Sbjct: 362 SFTKGAIEKIADITAVMNEKVENIGARRLSAVVEELLREVMYEAPYEKKKKVSIDANFVK 421 Query: 421 LHIGDFPSETDMYHFIL 437 E ++ +IL Sbjct: 422 KIFKKENEEENLDKYIL 438 >gi|11133033|sp|Q48735|HSLU_LACLE RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 464 Score = 348 bits (894), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 282/467 (60%), Gaps = 44/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124 Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153 A E I L G + T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210 KL G + ++E+ IEV + + S ++G KKK++ + Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREG Sbjct: 238 PVSQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N +IGARRL Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|260664455|ref|ZP_05865307.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii SJ-7A-US] gi|260561520|gb|EEX27492.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii SJ-7A-US] Length = 460 Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 190/463 (41%), Positives = 288/463 (62%), Gaps = 40/463 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AKRAVAIAL NR+RR QLP L+ ++ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APFIKVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ A+ Sbjct: 65 EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124 Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156 A + ++ LV N R ++L Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAQQPQEEVTDDIRNQRLSVAEQLN 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214 G + D+++ IEV + + ++ G +N L +M KKK++ ++V+ Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMSDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L++++S +++D DT+++ +I+ GI+F+DE DKI + G VSREGVQRD Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAG-QVSREGVQRD 297 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K+DF Sbjct: 298 ILPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL D E++L+ QY L++ +G+ L FT+++ID +A++A ++N +IGARRL T++E Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ + D++ + I YV + D D+ FIL Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460 >gi|238855700|ref|ZP_04645997.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 269-3] gi|282932214|ref|ZP_06337661.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 208-1] gi|313472145|ref|ZP_07812637.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 1153] gi|238831685|gb|EEQ24025.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 269-3] gi|239529516|gb|EEQ68517.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 1153] gi|281303664|gb|EFA95819.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 208-1] Length = 460 Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 190/463 (41%), Positives = 288/463 (62%), Gaps = 40/463 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AKRAVAIAL NR+RR QLP L+ ++ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVRLLNEYIIGQDEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APFIKVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ A+ Sbjct: 65 EIARRLAKIVDAPFIKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124 Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156 A + ++ LV N R ++L Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGFQQAQQPQEEVTDDIRNQRLSVAEQLN 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214 G + D+++ IEV + + ++ G +N L +M KKK++ ++V+ Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMSDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L++++S +++D DT+++ +I+ GI+F+DE DKI + G VSREGVQRD Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKEAG-QVSREGVQRD 297 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K+DF Sbjct: 298 ILPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL D E++L+ QY L++ +G+ L FT+++ID +A++A ++N +IGARRL T++E Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ + D++ + I YV + D D+ FIL Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460 >gi|291276927|ref|YP_003516699.1| putative heat shock protein [Helicobacter mustelae 12198] gi|290964121|emb|CBG39965.1| putative heat shock protein [Helicobacter mustelae 12198] Length = 443 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 185/448 (41%), Positives = 285/448 (63%), Gaps = 25/448 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +PREI LD YIIGQ +AKRA+AIALRNR+RR QL +R+E+ PKNI+++G TGVG Sbjct: 5 SMTPREITRHLDEYIIGQDEAKRAIAIALRNRYRRLQLDEKIREEVTPKNIMMIGSTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A++ PF+KVE +K+TE+G+VGR+VE ++RDLV +I++V E R+ Sbjct: 65 KTEIARRMAKMMNLPFVKVEASKYTEVGFVGRDVESMVRDLVSASIHLVE----SECRQS 120 Query: 126 ASINAEERILDALV--------------GKTATSNTREVFRKKLRDGEISDKEIDIEVAD 171 A +E IL + K + + E +K+++G + +I+IE+ Sbjct: 121 AQTQIQEYILQKITRILMPPLPDTITQEKKEEYTQSFEKMYQKVKNGAMDHVKIEIEIQK 180 Query: 172 TSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK-KIRMSVQKCYPELMRDESDRLIDM 230 + N P ++ + E KV+ ++ K M++++ L + S+R++DM Sbjct: 181 RLLENDNNMPPE-----LIKVQESIIKVLSKNQEMIKKEMTIKEAKIALQEEASERILDM 235 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + + ++++ + GI+F+DE DK+ V G+ S+EGVQRDLLP+VEGS V++KYG Sbjct: 236 EKIKTEALERAQTSGIIFIDEIDKVAVGSRDGSRQDPSKEGVQRDLLPIVEGSMVNSKYG 295 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 +I TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL++ ILT T++++I QY Sbjct: 296 AIKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELDSLSEEVMYQILTQTKTSIIKQY 355 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L+ TE + L F +D++ LA ++ + N DIGARRL T MERVLE+ISF A Sbjct: 356 QALLSTEDVNLVFEDDALRELARLSYHANQKNEDIGARRLHTTMERVLEEISFDADLHAG 415 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 KT I +++ + + TD+ +IL Sbjct: 416 KTYTITKNHIQEKLENLVENTDLAKYIL 443 >gi|325125938|gb|ADY85268.1| ATP dependant protease, ATP binding unit, heatshock protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 464 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 283/467 (60%), Gaps = 44/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124 Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153 A + ++ LV G T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210 KL G + ++E+ IEV + + S ++G KKK++ + Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREG Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N +IGARRL Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|302833497|ref|XP_002948312.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f. nagariensis] gi|300266532|gb|EFJ50719.1| hypothetical protein VOLCADRAFT_120588 [Volvox carteri f. nagariensis] Length = 663 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 191/425 (44%), Positives = 276/425 (64%), Gaps = 27/425 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ +V LDRYIIGQ DAKRAVA+A RNRWRR+++P +RD+++PKNILL+GPTG GK Sbjct: 1 MTPKAVVELLDRYIIGQDDAKRAVAVAYRNRWRRKRVPVSIRDDIVPKNILLIGPTGCGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA +PF+KVE TKFTE+GY GR+V+ IIRDL++ AI++VR R + + Sbjct: 61 TEIARRLAKLANSPFVKVEATKFTEVGYHGRDVDTIIRDLLEAAISLVRNKLRKQNEQAL 120 Query: 127 SINAEERILDALVGKTA-----TSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN--- 178 EERIL AL+ + + E R++LR+GE+ + I++++ ++ S Sbjct: 121 KAAVEERILRALLQQESLGAAGPGGGLEALRERLRNGELENVFIEVDLTPPANGGSGRGG 180 Query: 179 --FDI----PGGASVGILNLSELFSKVMGSGRKKKIR-------MSVQKCYPELMRDESD 225 D+ ++NL L S G + +R V++ P + E++ Sbjct: 181 GVLDLGPGGGVPGGPVVINLERLMS---GKRDVRTLRDELQLLVTEVREARPLIEDVEAE 237 Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS 282 R+ + + +++I E GIVF+DE DKIV+ G S EGVQRDLLP++EGS Sbjct: 238 RMFPPEQLVKEAIAATEQDGIVFIDEIDKIVSGGRGERWRSGDPSSEGVQRDLLPIIEGS 297 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 VSTK+G+INTDHILFI +GAFH +P+DL+ E+QGR P+RV LK L + DF ILT+ E Sbjct: 298 VVSTKHGNINTDHILFICAGAFHSVKPSDLMAELQGRLPIRVELKPLTRHDFYRILTEPE 357 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 NLI Q + L+ EG+ L+FT +++ + VA +N T+ +IGARRL V+ERV+E++SF Sbjct: 358 YNLIKQQQVLLAAEGVDLEFTPEALTEMTRVAEEVNRTLDNIGARRLHAVLERVVEEVSF 417 Query: 403 SASDL 407 SA +L Sbjct: 418 SAPEL 422 >gi|313123909|ref|YP_004034168.1| ATP-dependent hsl protease ATP-binding subunit hslu [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280472|gb|ADQ61191.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325686012|gb|EGD28071.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 464 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 191/467 (40%), Positives = 281/467 (60%), Gaps = 44/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124 Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153 A E I L G T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210 KL G + ++E+ IEV + + S ++G KKK++ + Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREG Sbjct: 238 PVSQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N +IGARRL Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|104774156|ref|YP_619136.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123378434|sp|Q1G9V4|HSLU_LACDA RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|103423237|emb|CAI98070.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 464 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 283/467 (60%), Gaps = 44/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRTQLPEDVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVESQAI 124 Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153 A + ++ LV G T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210 KL G + ++E+ IEV + + S ++G KKK++ + Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREG Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N +IGARRL Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|256851127|ref|ZP_05556516.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii 27-2-CHN] gi|260660551|ref|ZP_05861466.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii 115-3-CHN] gi|282932234|ref|ZP_06337678.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 208-1] gi|297205992|ref|ZP_06923387.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus jensenii JV-V16] gi|256616189|gb|EEU21377.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii 27-2-CHN] gi|260548273|gb|EEX24248.1| heat shock protein HslVU, ATPase subunit HslU [Lactobacillus jensenii 115-3-CHN] gi|281303629|gb|EFA95787.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus jensenii 208-1] gi|297149118|gb|EFH29416.1| ATP-dependent hsl protease ATP-binding subunit HslU [Lactobacillus jensenii JV-V16] Length = 460 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 189/463 (40%), Positives = 288/463 (62%), Gaps = 40/463 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EIV L+ YIIGQ +AKRAVAIAL NR+RR QLP L+ ++ PKN+L+ GPTGVGKT Sbjct: 5 TPKEIVRLLNEYIIGQNEAKRAVAIALYNRYRRLQLPKSLQQDITPKNMLMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDLV A+ + + + V+ A+ Sbjct: 65 EIARRLAKIVDAPFVKVEATKFTEVGYVGRDVESMVRDLVTEAVRMEEKEQFKRVKADAT 124 Query: 128 INAEERILDALVGKTATSN-------------------------------TREVFRKKLR 156 A + ++ LV N R ++L Sbjct: 125 KEANKTLVRLLVPGIKHENRENQMQQMMQMLMGSQQAEQPQEEVTDDIRNQRLSVAEQLN 184 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MSVQK 214 G + D+++ IEV + + ++ G +N L +M KKK++ ++V+ Sbjct: 185 KGLLEDRQVTIEV-EQAPKVNPMGDMMGQMGMDMN--SLLGDMMP---KKKVKRTLAVRD 238 Query: 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRD 274 L++++S +++D DT+++ +I+ GI+F+DE DKI + G VSREGVQRD Sbjct: 239 AREVLIQEQSRKMVDYDTIYQKAIERTSQNGIIFIDEIDKITGKSKDAG-QVSREGVQRD 297 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 +LP+VEGS+V TKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K+DF Sbjct: 298 VLPIVEGSTVQTKYGPVSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELNALTKADF 357 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 IL D E++L+ QY L++ +G+ L FT+++ID +A++A ++N +IGARRL T++E Sbjct: 358 VSILKDPENSLLKQYIALLEADGVKLIFTQEAIDKIAEIAYDVNQGTDNIGARRLATILE 417 Query: 395 RVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++LED+ + D++ + I YV + D D+ FIL Sbjct: 418 KLLEDVLYEGPDMEMGEITITQAYVEEKLSDIIMNKDLTKFIL 460 >gi|301096597|ref|XP_002897395.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative [Phytophthora infestans T30-4] gi|262107086|gb|EEY65138.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative [Phytophthora infestans T30-4] Length = 482 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 190/456 (41%), Positives = 289/456 (63%), Gaps = 35/456 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKT 67 P ++V LD++I+GQ++AK+AVA+ALR+RWRR+QL D LR E+ P NIL+ GPTG GKT Sbjct: 35 PEDVVRALDKFIVGQEEAKKAVAVALRSRWRRRQLQNDALRAEISPMNILMSGPTGSGKT 94 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA+++G+PF+KVE TKFTE+G G N + +I+D+VDVA+N+ R E ++ + Sbjct: 95 EIARRLAKISGSPFLKVEATKFTEVGIYGANADSMIKDIVDVAVNM----ERAEAQKLHA 150 Query: 128 INAEERILDALV----GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 + ER +D LV K + +R R+ + G+ ++++ +++ +SN P Sbjct: 151 TASRERAIDRLVDLLDHKKLSDISRADLREDIATGKADNRKVRVQL----KPLSNKTRPS 206 Query: 184 GASVG------------ILNLSELF-SKVMGSGRKKK---IRMSVQKCYPELMRDESDRL 227 A+ + +L L S+ G G K + M+V++ P L +E+D + Sbjct: 207 SANPEMMMEMPPELEKMMAHLDTLMTSRFSGGGSKSEDNTTSMTVKEALPRLEAEEADEI 266 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIV-----ARDSGNGIGVSR-EGVQRDLLPLVEG 281 ID D V + +++ V++ GIVFLDE DK+ AR GNG + EGVQ++LL L EG Sbjct: 267 IDDDEVVKRALENVQHNGIVFLDEIDKLASAGDQARSGGNGASYRKGEGVQKELLALTEG 326 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 +V+T+YG + TDHILFIASGAFH S+P+DL+PE+QGR P+RV L L ++F IL DT Sbjct: 327 CAVNTRYGLVYTDHILFIASGAFHRSKPSDLMPELQGRLPIRVALSPLGAAEFEKILKDT 386 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 E NL+ Q LM+TEG+ L FT+D+I +A +A +N+ +IGARRL T++ ++ E++S Sbjct: 387 EHNLLEQTSALMETEGVKLTFTDDAISEIASIAEQVNAQTDNIGARRLATIISKITEEVS 446 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F A + T +D +YV+ + + TD+ FIL Sbjct: 447 FHAPKMNGMTFEVDRKYVQQRLSNVLERTDLSKFIL 482 >gi|281210431|gb|EFA84597.1| Heat shock protein HslVU [Polysphondylium pallidum PN500] Length = 611 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 191/437 (43%), Positives = 286/437 (65%), Gaps = 17/437 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + P+EIV+ELDRYIIGQ +AKRAV+IALRNRWRR++L + ++ ++ PKNIL++GPTGVG Sbjct: 187 SLQPKEIVTELDRYIIGQAEAKRAVSIALRNRWRRKRLDSSIKHDVYPKNILMIGPTGVG 246 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA++ APF+KVE TK+TE+G+ G +V+ IIRDLV+V+IN ++ ++Q Sbjct: 247 KTEIARRLAKIVNAPFVKVEATKYTEVGFHGPDVDSIIRDLVEVSINNIKSKIGSTHKQQ 306 Query: 126 ASINAEERILDALVGKTATSNTRE--VFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 E+ I+ +LVG T + + V K L + +I E+D+ + S + IP Sbjct: 307 IDQEIEKEIISSLVGPTFQDRSYDDLVKEKCLENIQI---ELDLPSNNDSKSVDEEIIP- 362 Query: 184 GASVGILNLSELFS-KVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 ++LF+ +V + KK ++V + L + D++I V + ++Q E Sbjct: 363 --------FAKLFNIQVEVNKPTKKKTLTVAEARNTLEKIYKDKVIVAQDVTKLAVQSAE 414 Query: 243 NYGIVFLDEFDKI--VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 GIVFLDE DKI V S G S +GVQRDLLP++EG +V+TKYG+++T ILFIA Sbjct: 415 QNGIVFLDEIDKICTVKESSHRGGDASTDGVQRDLLPIIEGCNVNTKYGNVDTSRILFIA 474 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH ++P+DL+ E+QGR P+RV LK L + DF ILT+ ++N I Q L+KTE I L Sbjct: 475 SGAFHSNKPSDLISELQGRLPIRVELKPLEQHDFFRILTEPKNNQIQQQVALLKTEDIDL 534 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +FT+D++ +A +A N+ V +IGARRL V+E+++EDISF+ + + V I + V+ Sbjct: 535 EFTQDALQEIARIAFEANAQVQNIGARRLHGVIEKIVEDISFNCDTHKGQKVTITVDDVK 594 Query: 421 LHIGDFPSETDMYHFIL 437 H+ D +TD+ +I+ Sbjct: 595 KHLSDLMLKTDLSKYII 611 >gi|302764596|ref|XP_002965719.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii] gi|300166533|gb|EFJ33139.1| hypothetical protein SELMODRAFT_439468 [Selaginella moellendorffii] Length = 489 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 193/440 (43%), Positives = 286/440 (65%), Gaps = 36/440 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P ++V LDRYI+GQ AKRAVA+A R R+ R GK Sbjct: 77 LTPAKVVEVLDRYIVGQTAAKRAVAVAFRMRFSRAWC--------------------CGK 116 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+++ APF+KVE TKFTE+G+ GR+V+QIIRDLVD AI + R+ R ++ ++ Sbjct: 117 TEIARRLAKISYAPFVKVEATKFTEVGFHGRDVDQIIRDLVDNAIVLQRQRIRTKISKEV 176 Query: 127 SINAEERILDALVG--------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 + E+RILD LVG K+ TS ++FRK R+G I +++I ++V + + Sbjct: 177 EKSVEDRILDVLVGVQQEEISEKSLTSM--DMFRKLYREGAIDNRKIQLDVPEGRVRLP- 233 Query: 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 D+ G L +++L KV+ S + ++ ++V + P L E ++ + D + +D+I Sbjct: 234 VDVMGNG----LPVNDLIYKVLKSPKVERREITVGEARPLLTEIEMEKYLQSDQIVKDAI 289 Query: 239 QMVENYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 Q+ E+ GIVF+DE DKIV ++ G S EGVQRDLLP++EGS V+TKYG++NTDHIL Sbjct: 290 QLTESDGIVFIDEIDKIVTTSETRRGADASAEGVQRDLLPIIEGSVVNTKYGNVNTDHIL 349 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 FI SGAFH +P+D+L E+QGR P+RV LK+L + D ILT+ E N++ Q + L++TEG Sbjct: 350 FICSGAFHSCKPSDMLAELQGRLPIRVELKALQREDLYRILTEPEINMLKQQQLLLETEG 409 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L FTED++ LA+VA +N ++ +IGARRL TV+ERV+EDISFSA + + ++ID E Sbjct: 410 VELIFTEDAVRELANVAAEVNRSLDNIGARRLHTVIERVVEDISFSAPERAGEKLIIDKE 469 Query: 418 YVRLHIGDFPSETDMYHFIL 437 VR +GD ++ D+ F+L Sbjct: 470 KVRKSVGDLLNKMDLSKFVL 489 >gi|57242464|ref|ZP_00370402.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter upsaliensis RM3195] gi|57016749|gb|EAL53532.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter upsaliensis RM3195] Length = 439 Score = 345 bits (886), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 191/445 (42%), Positives = 300/445 (67%), Gaps = 18/445 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR +L +L+D++MPKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMRLSPELQDDIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNQD 120 Query: 125 QASINAEERILDALVG---KTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSS 174 + E++IL+ L+ K + +E ++K KL++G++ + I++E++ Sbjct: 121 KIEAYIEDKILEKLLPPLPKGVSEEKQEEYQKSLEKMRIKLKNGDLDESVIELEISQNMF 180 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE-SDRLIDMDTV 233 D +N ++P S + KV+G G KK + K ++ E SD+++D + + Sbjct: 181 D-TNPNLPPEMSA-----MQDMVKVIGVGSKKVKKEMKIKDARNTLKSEASDKILDTENI 234 Query: 234 HRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSIN 292 ++++ VEN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGSSV TK G + Sbjct: 235 KSEALRRVENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSVQTKLGIVK 294 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY EL Sbjct: 295 TDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDEALYAILTRPKNSLLKQYIEL 354 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 +KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+S+ A + K+ Sbjct: 355 LKTEDLSLEFDDEAIREIAKIASRANEEMQDIGARRLHTVIEKLLEDLSYEADEYAGKSF 414 Query: 413 VIDAEYVRLHIGDFPSETDMYHFIL 437 V+D + V + D+ +IL Sbjct: 415 VVDKKMVEEKLSSIVENKDLARYIL 439 >gi|237736692|ref|ZP_04567173.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] gi|229420554|gb|EEO35601.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] Length = 437 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 187/442 (42%), Positives = 290/442 (65%), Gaps = 10/442 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLV 59 M + +P++IV EL++YII Q +AK+ VAI+LRNR RR+ + +LR E+ PKNI+L+ Sbjct: 1 MGINKELTPKKIVEELNKYIISQDEAKKNVAISLRNRDRRKMIEDENLRKEITPKNIILI 60 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G TGVGKT I+RR+A++A APF+KVE TK+TE+GYVG++VE II+DLV + ++E + Sbjct: 61 GSTGVGKTEIARRIAKIANAPFLKVEATKYTEVGYVGKDVESIIKDLVALTYRKMKEEKY 120 Query: 120 DEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 ++ + A ER+ L T +E+ +K+L +G+ EI+I+ +DI Sbjct: 121 GLLKLSSLDAAIERVAKILKPYDTLNDEDKEIIKKELAEGKYDHTEIEIDRPKKDNDIPI 180 Query: 179 FDIPGGASVGILNLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 ++ G+ ++ L ++M + G+ KK+ SV + +E ++ ID++ + ++ Sbjct: 181 IEVISGSE----DIGGLVDQMMSTLPGKLKKMTTSVLNALNLFLEEEVEKKIDLEALAQE 236 Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 ++ VEN GI+F+DE DKI R+ G+G G VSR+GVQRD+LP+VEGS+V TKYG + TDH Sbjct: 237 VVENVENNGIIFIDEIDKITERE-GSGKGDVSRQGVQRDILPIVEGSTVMTKYGPVRTDH 295 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIA+GAF S P+DL+PE+QGRFP+RV L++L K DF ILT+ E NL+ QYK ++ Sbjct: 296 ILFIAAGAFSQSSPSDLMPELQGRFPIRVKLQNLEKEDFVKILTEVEYNLLEQYKAMLSV 355 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 + + L FT+ +I+ +A++ N + +IGARRL +V+E +L DI F A ++K + ID Sbjct: 356 DNVELTFTKGAIEKIAEITAIQNEKIENIGARRLASVVEELLRDIMFEAPYKEKKKISID 415 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 +V+ + E + FIL Sbjct: 416 INFVKKVLKKEIEEESLDKFIL 437 >gi|300812252|ref|ZP_07092690.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496766|gb|EFK31850.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 464 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 190/467 (40%), Positives = 282/467 (60%), Gaps = 44/467 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YIIGQ +AK++VAIAL NR+RR QLP ++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIIGQNEAKKSVAIALYNRYRRAQLPEYVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124 Query: 128 INAEERILDALV------------------------GKTATSNTREV----------FRK 153 A + ++ LV G T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMMQSLLAGGGMPEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSG-RKKKIR--M 210 KL G + ++E+ IEV + + S ++G KKK++ + Sbjct: 185 KLDRGLLENEEVTIEVEQAPK-------ANPMGDMMGQMGMDMSSMLGDMLPKKKVKRTL 237 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREG Sbjct: 238 PVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREG 297 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L Sbjct: 298 VQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALT 357 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N +IGARRL Sbjct: 358 KDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTDNIGARRLA 417 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 418 TILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|310778883|ref|YP_003967216.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter polytropus DSM 2926] gi|309748206|gb|ADO82868.1| heat shock protein HslVU, ATPase subunit HslU [Ilyobacter polytropus DSM 2926] Length = 440 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 184/415 (44%), Positives = 287/415 (69%), Gaps = 7/415 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64 +PREIV +LD+YI+ Q +AK+ VAI+LRNR+RR+ + +++R E+ PKNI+L+GPTGV Sbjct: 4 KLTPREIVEQLDKYIVSQDEAKKNVAISLRNRYRRKAIEDSEMRKEITPKNIILMGPTGV 63 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++A +PF+KVE TK+TE+GYVG++VE +I+DLV + I ++ + + +RE Sbjct: 64 GKTEIARRLAKIADSPFLKVEATKYTEVGYVGKDVESMIKDLVGITIRKIKTEKIENLRE 123 Query: 125 QASINAEERILDALVGKTATSNTREVFR--KKLRDGEISDKEIDIEVADTSSD--ISNFD 180 + E++ L+ T N E + ++++DG+ ++ E+++E + S + F Sbjct: 124 KFMSQVLEKVA-KLIKPYDTLNPDEKGKIIQEIKDGKHAEVEVELEKSKKSDSPVVEVFS 182 Query: 181 IPGGASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 G+ + E + S G+ KKI++ V+ +++DE ++ IDM+++ ++++ Sbjct: 183 AGNSQDEGMQGIIENIMSSFPSGGKAKKIKLKVKDALEYILKDEIEKSIDMESLIPEAVK 242 Query: 240 MVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 M E GI+F+DE DKI R+ + VSR+GVQRD+LP+VEG++V TKYG++ TDHILF+ Sbjct: 243 MTEEDGIIFIDEIDKIAEREGASRGEVSRQGVQRDILPIVEGTTVMTKYGAVKTDHILFV 302 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 A+GAF +S P+DL+PE+QGRFPV+V LKSL K DF ILT E NLI QYK L+ ++ + Sbjct: 303 AAGAFTLSSPSDLMPELQGRFPVKVKLKSLEKEDFIKILTAVEYNLIQQYKLLLGSDDVE 362 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +DFT +ID +++VA+ LN +V +IGARRL V+E VL+DI F A +K + I Sbjct: 363 IDFTPGAIDRISEVAIELNESVENIGARRLAAVVETVLKDIMFEAPYEDKKKIKI 417 >gi|167998406|ref|XP_001751909.1| predicted protein [Physcomitrella patens subsp. patens] gi|162697007|gb|EDQ83344.1| predicted protein [Physcomitrella patens subsp. patens] Length = 762 Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 198/436 (45%), Positives = 278/436 (63%), Gaps = 32/436 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P IV LDRYI+GQQDAKRAVA+ALRNRWRR ++P LRDE++PKNIL++GPTG GK Sbjct: 331 LTPVRIVEMLDRYIVGQQDAKRAVAVALRNRWRRHRIPDALRDEIVPKNILMIGPTGCGK 390 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA++A APF+KV E V + VE L+D+ + R++ Sbjct: 391 TEIARRLAKIAYAPFVKVRAKLVKE---VEKAVEA---RLLDIFM----------ARQRP 434 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGAS 186 + E A+ G A E FRK RDG + +++I +++ D S + +I G + Sbjct: 435 PVEGE----SAVPGARADY---ETFRKLYRDGALDNRKIQLDIPDGRSRLP-LEIGGVSG 486 Query: 187 VG----ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 G I L ++ KV S R +++ +++ + P L E ++ ++ D + +D+I + E Sbjct: 487 FGVNELIFRLPQM-EKVFKSQRMERMEITIGEAKPILREIEMEKHLNSDQITKDAILLAE 545 Query: 243 NYGIVFLDEFDKIVA-RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 + GIVF+DE DKIV ++ +G S EGVQRDLLP++EGS V+TKYG++NTDHILFI S Sbjct: 546 SDGIVFIDEIDKIVTNHETRHGADASSEGVQRDLLPIIEGSMVNTKYGNVNTDHILFICS 605 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFH +P+D+L E+QGR P+RV LK L + D ILT+ E+N+I Q + LMKTE I L Sbjct: 606 GAFHSCKPSDMLAELQGRLPIRVELKGLGREDLYRILTEPETNMIRQQQLLMKTEDINLV 665 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT+D+I+ LA VA +N +V +IGARRL TV+ERV+EDISF A + +T ID E L Sbjct: 666 FTDDAIEELATVAAEVNRSVDNIGARRLHTVIERVVEDISFHAPERAGETYTIDKEVHLL 725 Query: 422 HIGDFPSETDMYHFIL 437 + F +E Y F L Sbjct: 726 PL--FHNEEHFYGFSL 739 >gi|315929326|gb|EFV08534.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 305] Length = 419 Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 187/425 (44%), Positives = 292/425 (68%), Gaps = 22/425 (5%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ+ AK+ +AIALRNR+RR QL +L+D+++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQDDIVPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE ++RDL + A+N+V+ +R++ ++ Sbjct: 61 GKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKNEQREKNKD 120 Query: 125 QASINAEERILDALV----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 + E +IL+ L+ + N+ E R KLR+G++ + I+IE++ Sbjct: 121 KIDEFIENKILEKLLPPLPKGISNEKQEEYKNSLEKMRTKLRNGDLDESTIEIEISQNMF 180 Query: 175 DISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES-DRLIDMD 231 D +N ++P GA I+ KV+G G KK + K +++E+ ++++D + Sbjct: 181 D-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKKEMKIKDAKNALKNEAGEKILDQE 232 Query: 232 TVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 ++ ++++ EN GI+F+DE DKI V+ + N S+EGVQRDLLP+VEGS+V TK G+ Sbjct: 233 SIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSNVQTKIGT 292 Query: 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L SL+ ILT +++L+ QY Sbjct: 293 LKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPKNSLLKQYS 352 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +L+KTE + L+F +++I +A +A N + DIGARRL TV+E++LED+SF A + K Sbjct: 353 QLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLHTVIEKLLEDLSFEADEYAGK 412 Query: 411 TVVID 415 V+D Sbjct: 413 KFVVD 417 >gi|291296104|ref|YP_003507502.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber DSM 1279] gi|290471063|gb|ADD28482.1| heat shock protein HslVU, ATPase subunit HslU [Meiothermus ruber DSM 1279] Length = 417 Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 199/436 (45%), Positives = 288/436 (66%), Gaps = 22/436 (5%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P EIV ELD++I+GQ AKRAVA+ALRNR RR++LP +L E+MPKNIL++GPTGV Sbjct: 1 MNLTPAEIVRELDKHIVGQAAAKRAVAVALRNRIRRKKLPPELAREVMPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + A +V + + +V Sbjct: 61 GKTEIARRLARLAGAPFLKVEATKFTEVGYVGRDVDSIVRDLAEAAYQLVMQEMKAKVEG 120 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 +A AEE + L V +LR G +D+ I+IEVA+ + + + GG Sbjct: 121 RAQNLAEEEVASIL----------RVSPLELRTGRYNDQLIEIEVAEEAR-LPMMGMFGG 169 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD-ESDRLIDMDTVHRDSIQMVEN 243 + +L ++ +M + ++ + E++++ E++RL+D + +++++ + Sbjct: 170 EQ--MQSLQDMLKGLMPQRKVRRKVRVKEAL--EILKNQEAERLVDKEEATQEALRRAQE 225 Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIAS 301 GIVF+DE DKI AR G G VS EGVQRDLLP+VEG+ VST+ G ++TDH+LFIA+ Sbjct: 226 EGIVFIDEVDKI-ARGKGAVGGPDVSGEGVQRDLLPIVEGTVVSTRLGPVSTDHVLFIAA 284 Query: 302 GAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 GAFHVS+P+DL+PE+QGRFP+RV L+ L ++F IL + E++LI QY+ L+ + L Sbjct: 285 GAFHVSKPSDLIPELQGRFPIRVELEPLGPAEFERILREPENSLIKQYQALLAADETELH 344 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 FT ++I A+A A N + DIGARRL TV+ERVLE++SF S V + EYV Sbjct: 345 FTPEAIQAVARFAHQANQELEDIGARRLATVLERVLEEVSFQTSL---GRVEVTKEYVEA 401 Query: 422 HIGDFPSETDMYHFIL 437 + D + D+ +IL Sbjct: 402 RLKDVLASHDLSRYIL 417 >gi|25814819|gb|AAN75636.1|AF270500_2 HslU [Leptospira borgpetersenii] Length = 391 Score = 342 bits (877), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 180/382 (47%), Positives = 265/382 (69%), Gaps = 33/382 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR+IV++LD +IIGQ++AK+AVAIALRNR RR++L ++R+E+ PKNI+++GPTGVGK Sbjct: 8 LTPRQIVAKLDEHIIGQKNAKKAVAIALRNRTRRKKLDLEMREEIYPKNIIMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPF+KVE TK+TE+GYVGR+VE +IRDL +++N+V++ R +V E A Sbjct: 68 TEIARRLSKLCGAPFLKVEATKYTEVGYVGRDVESMIRDLAVISMNLVKQEFRTKVEETA 127 Query: 127 SINAEERILDALVG---------------KTATSN----------TREVFRKKLRDGEIS 161 AEE +LD L+ KT++++ TRE RKKL+ G++ Sbjct: 128 KQKAEEALLDILLPFPVENKYNPGQAADFKTSSTDEEERKTHFFETREFMRKKLKTGKLD 187 Query: 162 DKEIDIEVADTS-SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 D+E+++++ + S S I + G ++ +L V+G KK + K PE + Sbjct: 188 DQEVELDLPNPSVSQIPMLQVFGAGNLD--DLDNQLQNVLGDLLPKKNKKRKLKI-PEAI 244 Query: 221 RD----ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 + E+D+L+D D V R++++ VE GI+FLDE DKI R+ NG VSREGVQRDLL Sbjct: 245 KTLEEFEADKLLDPDKVQREALRRVEEMGIIFLDEIDKIAGREGKNGADVSREGVQRDLL 304 Query: 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 P+VEG++V+TK G + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ L++ DF Sbjct: 305 PIVEGATVNTKIGPVKTDHILFIAAGAFHMTKPSDLIPELQGRFPIRVELEKLSREDFEK 364 Query: 337 ILTDTESNLILQYKELMKTEGI 358 ILT S+L QY+ L+ T+GI Sbjct: 365 ILTAPRSSLARQYEALLFTDGI 386 >gi|28317391|tpe|CAD29867.1| TPA: regulatory subunit of the HslVU complex [Trypanosoma brucei] Length = 510 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 197/465 (42%), Positives = 277/465 (59%), Gaps = 32/465 (6%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L N PRE++ ELD YIIGQ +AK+AVA+ALRNRWRR Q+ A +R+E+ PKNIL++GPT Sbjct: 48 LVRNMKPRELMQELDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPT 107 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVR 115 GVGKT I+RRLA+L APFIKVE TK+TE+G+ G+NVE II DL A + I R Sbjct: 108 GVGKTEIARRLAKLVDAPFIKVEATKYTEVGFKGKNVESIIEDLYSNAKTKDKRRLEIER 167 Query: 116 ESRRDEVREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDKEI--------- 165 E + E+ + N A ++T N+ V+ D S ++ Sbjct: 168 EKKAHELALEIVFNGWHSCRSASGSFGSSTRNSGSVYSSAEEDKNSSSRDNVTFEEFKEK 227 Query: 166 -------DIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMSVQ 213 D+ V D + P + SV +L++ L +GS G K ++ V+ Sbjct: 228 YKTQFKDDMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKRVE 285 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + P ++ RL+D + + + E G+VF+DE DK+V + VS GVQ+ Sbjct: 286 EALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGVQQ 345 Query: 274 DLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKS 332 DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH + +D++ E+QGR PVRV + +L + Sbjct: 346 DLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALKEE 405 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 D R IL + + NL+LQ K LMKTE I L+FT D++D LA V +N+ +IGARRL TV Sbjct: 406 DIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLHTV 465 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ERV+++ SF+ D + K VVIDAE VR G + D+ +IL Sbjct: 466 VERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 510 >gi|328950838|ref|YP_004368173.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus hydrothermalis DSM 14884] gi|328451162|gb|AEB12063.1| heat shock protein HslVU, ATPase subunit HslU [Marinithermus hydrothermalis DSM 14884] Length = 417 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 207/435 (47%), Positives = 290/435 (66%), Gaps = 23/435 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV ELD+YIIGQ AKRAVA+ALRNR+RR++LPA++ E++PKNIL++GPTGVG Sbjct: 3 ELTPREIVQELDKYIIGQAAAKRAVAVALRNRYRRKRLPAEMAREVIPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLARLA APF+KVE TKFTE+GYVGR+V+ I+RDL +VA +V + + + V E+ Sbjct: 63 KTEIARRLARLARAPFLKVEATKFTEVGYVGRDVDSIVRDLAEVAYQLVMQEKTEAVAER 122 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 A AEERI + L V +R G D +++EVA+ + +P Sbjct: 123 ALARAEERIAELL----------RVSPYDVRSGRYDDHLVEVEVAEEAQ------LPFMG 166 Query: 186 SVG---ILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 +G + L+++ S + R+ + RM V++ L E++ +ID + V +++++ + Sbjct: 167 MMGAEQMQGLTDMLSSFL-PKRRVRRRMKVREAREVLKAQEAEMMIDKEEVTQEAVRRAQ 225 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVF+DE DKI D G VS EGVQRDLLP+VEG+ V+T+ G ++T+H+LFI +G Sbjct: 226 EDGIVFIDEIDKIAGSDKIQGPDVSGEGVQRDLLPIVEGTVVNTRLGPVSTEHVLFIGAG 285 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHV++P+DL+PE+QGRFP+RV L L DF ILT TE++LI QY L+ T+GI L+F Sbjct: 286 AFHVAKPSDLIPELQGRFPIRVELTELTAEDFARILTSTENSLIRQYTALLGTDGIELEF 345 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 T ++I A+AD A N + DIGARRL TV+ERVLE+ISF +DL V I EYV Sbjct: 346 TPEAIRAIADYAYRANRELEDIGARRLHTVLERVLEEISFQ-TDL--GRVTITKEYVEER 402 Query: 423 IGDFPSETDMYHFIL 437 + D+ +IL Sbjct: 403 LSPVMGSEDLSRYIL 417 >gi|330822067|ref|XP_003291622.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum] gi|325078187|gb|EGC31852.1| hypothetical protein DICPUDRAFT_49939 [Dictyostelium purpureum] Length = 491 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 181/438 (41%), Positives = 276/438 (63%), Gaps = 12/438 (2%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N +P +I+++LD YIIGQ +AK++V+ ALR RWRR+++ +R ++ PKNIL++GPTGVG Sbjct: 60 NLNPNQILNKLDEYIIGQANAKKSVSSALRLRWRRKRVDPSIRADVSPKNILMIGPTGVG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA + APFIKVE TK+TE+GY G +V+ II+DL+DVAI+ ++ + + Sbjct: 120 KTEIARRLAAIVNAPFIKVEATKYTEVGYHGPDVDTIIKDLIDVAISNIKSKIAESHKAN 179 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGA 185 + E+ I+ ++G ++ + E K R+ I ++I+V ++ FD + Sbjct: 180 IEADVEKEIITNILGPNGSNGSIEELTKLYRNKSIETIMVEIDVPNS------FDKQHSS 233 Query: 186 SVGILNLSE----LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 S+ + + S L KK +++V + L + ++ V + +IQ V Sbjct: 234 SIQLDDESPFIRLLVPGAASEKNSKKRKVTVSEARAILEKTYREKYTVSQDVTKLAIQSV 293 Query: 242 ENYGIVFLDEFDKIVA--RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFI 299 E GIVFLDE DKI + NG S +GVQRDLLP++EG +VSTKYG ++T ILFI Sbjct: 294 EQNGIVFLDEIDKICTPRENYKNGGDASSDGVQRDLLPIIEGCNVSTKYGMVDTSKILFI 353 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 ASGAFH S+P+DL+ E+QGR P+RV LK L + DF ILT+ +N I Q + LMKTE I Sbjct: 354 ASGAFHNSKPSDLISELQGRLPIRVELKPLEEEDFYRILTEPRNNQIKQQQALMKTENID 413 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L FTE+++ +A + N+ + ++GARRL ++ER++EDISF+ +++TV I E V Sbjct: 414 LQFTEEALREVAKITFESNAQIQNLGARRLHGIIERIIEDISFNCHLYKDQTVTIGVEDV 473 Query: 420 RLHIGDFPSETDMYHFIL 437 R + D +TD+ +I+ Sbjct: 474 RKKLSDLLLKTDLSKYII 491 >gi|328948445|ref|YP_004365782.1| heat shock protein HslVU, ATPase subunit HslU [Treponema succinifaciens DSM 2489] gi|328448769|gb|AEB14485.1| heat shock protein HslVU, ATPase subunit HslU [Treponema succinifaciens DSM 2489] Length = 507 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 198/494 (40%), Positives = 288/494 (58%), Gaps = 67/494 (13%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P +IV +LD YIIGQQ AKR VA+ALRNR RR +LP ++RDE+ PKNIL++GPTGVGK Sbjct: 18 LTPAQIVEKLDNYIIGQQKAKRFVAVALRNRQRRIKLPEEIRDEVAPKNILMMGPTGVGK 77 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGY--------------VGRNV--EQIIRDLVDVA 110 T I+RRLA+L GAPF+KVE TK+TE+GY VG N+ ++ L + Sbjct: 78 TEIARRLAKLCGAPFLKVEATKYTEVGYVGRDVESMVRDLMAVGYNMVKAEMQEKLREKC 137 Query: 111 INIVRESRRD---------EVREQASINAEERILDALVGKTAT----------------- 144 I IV + D + R+ +S + +L + G+++ Sbjct: 138 IPIVEDQLLDLLLPGSSGKKKRKDSSPKRDVHVLGNIFGESSPIQGSLIQVDIPKENPAQ 197 Query: 145 -----------------SNTREVFRKKLRDGEISDKEIDIEVADTSS---DISNFDIPGG 184 ++TRE FR LR+G++ D+ ++I V S ++ P Sbjct: 198 DEPQEEIEEETSTSEDMASTREKFRTMLREGKLEDRVVEITVHRQPSFSMNMMGASNPED 257 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 I L EL S GR K+ ++V++ LM D +R D D ++ + VE Sbjct: 258 LEESINGLQELLS----GGRSKRRNVTVREARQILMADTLERNTDSDKAADEAKKRVEQS 313 Query: 245 GIVFLDEFDKIVARDS-GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGA 303 GI+F+DE DKI G+ VSREGVQRD+LP+VEGS V+TK+G +NT HILFI +GA Sbjct: 314 GIIFIDEIDKIATHGGEGDRQAVSREGVQRDILPIVEGSDVNTKWGVVNTTHILFIGAGA 373 Query: 304 FHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 F VS P+DL+PE+QGRFP+RV L+ L K DF+ ILT+ ++ L+ QY+ L+ TEG+ L F Sbjct: 374 FSVSAPSDLIPELQGRFPLRVELEPLKKEDFKRILTEPKNALVKQYEALLATEGVTLKFA 433 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +++ID ++ +A ++NS +IGARRL T+ME VLE++SF A +T+ ID++YV + Sbjct: 434 DEAIDRMSFIAEDVNSHSENIGARRLHTIMETVLEELSFDADRHAGETITIDSKYVDEKL 493 Query: 424 GDFPSETDMYHFIL 437 ++ +IL Sbjct: 494 NGVIQNQNLERYIL 507 >gi|320450079|ref|YP_004202175.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus SA-01] gi|320150248|gb|ADW21626.1| ATP-dependent protease HslVU, ATPase subunit [Thermus scotoductus SA-01] Length = 416 Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 192/435 (44%), Positives = 281/435 (64%), Gaps = 21/435 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P EIV EL ++I+GQ+ AKRAVA+ALRNR+RR++LP ++ E+ PKNIL++GPTGV Sbjct: 1 MNLTPAEIVRELSKHIVGQEAAKRAVAVALRNRYRRKKLPPEVAREVTPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + + +V E + +V E Sbjct: 61 GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVMEEMKKKVEE 120 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 +A AEE + L A ++R G + ++++V + S +P Sbjct: 121 KALALAEEELATLLRASVA----------EVRAGRLDSLSVEVQVEEEMS------LPFM 164 Query: 185 ASVGILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 +G + + G K+ +R M+V++ L ++RLID + + ++ + + Sbjct: 165 GVLGGEGFGGMGEMLKGLLPKRPVRKRMTVKEAREVLKNQHAERLIDKEELKEEARRRAQ 224 Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIVF+DE DK+ R+ G VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+G Sbjct: 225 EDGIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAG 284 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 AFHV++P+DL+PE+QGRFP+RV L L +F IL + E++LI QY EL++ +G L F Sbjct: 285 AFHVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVF 344 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 ED++ A+A+ A N + DIGARRL TV+ERVLE++SF +DL V I YV Sbjct: 345 HEDALRAIAEAAYRANQELEDIGARRLATVLERVLEEVSFQ-TDL--GRVEITRAYVEQR 401 Query: 423 IGDFPSETDMYHFIL 437 + + D+ F+L Sbjct: 402 LEAVFASPDLTRFVL 416 >gi|118374823|ref|XP_001020599.1| heat shock protein HslVU, ATPase subunit HslU containing protein [Tetrahymena thermophila] gi|89302366|gb|EAS00354.1| heat shock protein HslVU, ATPase subunit HslU containing protein [Tetrahymena thermophila SB210] Length = 469 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/450 (40%), Positives = 279/450 (62%), Gaps = 21/450 (4%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 +K + + +P+E+V L ++IIGQ+ AKRAVAIA RNRWRRQ L DL+ E+ PKNIL+VG Sbjct: 28 IKKSSSMTPKEVVEYLSQHIIGQEQAKRAVAIAYRNRWRRQFLEEDLKKEVCPKNILMVG 87 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTG GKT I+RRLA+L+ APFIKVE TK+TE+GY G++VEQII+DLV A+ + + + Sbjct: 88 PTGSGKTEIARRLAQLSDAPFIKVEATKYTEVGYHGKDVEQIIQDLVRTAVRNAKANHKK 147 Query: 121 EVREQASINAE---ERILDALVGKT-ATSNTREVFRKKLRDGEISDKEIDIEV------- 169 + I + ++I+DA +G + R R+ + + + D+ I +E+ Sbjct: 148 NIENAKQIIEQIVLDQIVDAFLGPNFSNEEVRNKKREDISNNLMDDRRITVELPHDYWER 207 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 +T N D L+ + F + + ++ R++V+ +L + + L Sbjct: 208 VNTKGSFQNID-------EFLDYIKNFKQGLNPKNDQQ-RLTVKGARSQLYQIYEEALEK 259 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTK 287 + +I+ VE GIVF+DE DKI N S +GVQRDLLPL+EG+ VSTK Sbjct: 260 SVNYEKIAIRQVEEEGIVFIDEIDKIATSGEIQQNQKSPSADGVQRDLLPLIEGTVVSTK 319 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 +G + TDHILFI +GAF +S+P+DL+PE+ GR P+RV L+ L K++ IL + N+I Sbjct: 320 WGDVKTDHILFITAGAFSMSKPSDLIPELLGRLPIRVELQQLKKNELYSILKFPKYNMIF 379 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 Q ++L+K EG+ + FT++++ +A +A N+++ DIGARRL ++ER LE+ISF A L Sbjct: 380 QQQQLLKQEGLNIQFTDEAVKKIAILAEQANTSLEDIGARRLHELIERCLENISFDAPYL 439 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++K +VID ++V + + + D F++ Sbjct: 440 EQKDIVIDQQFVDKTLQKYMEKADYRKFLI 469 >gi|325182050|emb|CCA16503.1| ATPdependent hsl protease ATPbinding subunit hslU pu [Albugo laibachii Nc14] Length = 502 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 191/453 (42%), Positives = 280/453 (61%), Gaps = 28/453 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKT 67 P EIV+ELDR++IGQ++AK AVAIALRNRWRR+ + + LR E+ P NIL+ GPTG GKT Sbjct: 54 PGEIVAELDRHVIGQKEAKCAVAIALRNRWRRRHIQNESLRAEVSPMNILMSGPTGSGKT 113 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ +PF+KVE TK+TE+G G + + +I+DL++VAI+ RE+ R++ S Sbjct: 114 EIARRLAKMTNSPFLKVEATKYTEVGIYGASADSMIKDLMNVAIDAEREN----ARKRCS 169 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRD----GEISDKEIDIEVADTSSDISN----- 178 A ER LD LV S++ + R LR+ G + I I++ + S+ Sbjct: 170 RAARERALDRLVKHIHESSSSQRNRPNLREDIDSGRLDSVMISIQLRNISNRPKGPRGSM 229 Query: 179 ---FDIPGGASVGILNLSELFSKVMGSGRK-----KKIRMSVQKCYPELMRDESDRLIDM 230 +IP + NL+ + +K + K R+SV+ L +E++ +I+ Sbjct: 230 DMMMEIPPEFEQMVKNLNSMMNKHANTSSSQGPFAKAERLSVKDALQRLKFEEAEDIINE 289 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIV-ARDS---GNGIGVSR--EGVQRDLLPLVEGSSV 284 D V ++++ V+N GI+FLDE DK+ + DS G G G R EGVQ++LL L EG V Sbjct: 290 DEVIENALENVQNNGIIFLDEIDKLAESSDSSMAGRGGGQFRKGEGVQKELLALTEGCVV 349 Query: 285 STKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 T++G I+T+HILFIASGAFH P+DL+PE+QGR P+RV L L ++ IL +TE N Sbjct: 350 RTRHGMIHTNHILFIASGAFHKCSPSDLIPELQGRLPIRVTLSPLGAPEYERILKETEYN 409 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 L+ Q + L++TEGI L FT+D+I +A + +NS DIGARRL T++ +V ++ISF A Sbjct: 410 LLQQMQALLETEGIQLVFTDDAIVEMAAITAQINSQSDDIGARRLSTIVSKVTDEISFHA 469 Query: 405 SDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + T ID YVR + +TD+ +IL Sbjct: 470 PKMTGMTHQIDKAYVRQRLSSVMEKTDLRKYIL 502 >gi|313681855|ref|YP_004059593.1| heat shock protein hslvu, ATPase subunit hslu [Sulfuricurvum kujiense DSM 16994] gi|313154715|gb|ADR33393.1| heat shock protein HslVU, ATPase subunit HslU [Sulfuricurvum kujiense DSM 16994] Length = 442 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 194/448 (43%), Positives = 286/448 (63%), Gaps = 21/448 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N P+EIV LD++IIGQ +AK+ +A+ALR R+RR +L L+DE+MPKNIL++G TGV Sbjct: 1 MNMIPQEIVDYLDQHIIGQNNAKKTIALALRTRYRRLRLDPPLQDEIMPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLA+L PFIKVE +K+TE+G+VGR+VE ++RDLV + ++V+ + +E Sbjct: 61 GKTEIARRLAKLMQLPFIKVEASKYTEVGFVGRDVESMVRDLVMTSYSMVKAEHNENNKE 120 Query: 125 QASINAEERILDALVGK---------TATSNTREV-----FRKKLRDGEISDKEIDIEVA 170 E I+D L K T R KK+R+G + D+ ++IE++ Sbjct: 121 AI----EHYIVDILTHKLHPEVPHFPTEEEKARHEISKSELSKKIRNGGMDDRLVEIELS 176 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 + ++ ++P + + S++FS V+G KK +SV + L ++ S++L++ Sbjct: 177 TGGIEFNDTNMPPEIARVQESFSKMFS-VIGKEENKK-EVSVAEAKEILRQEASEKLLNH 234 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYG 289 D + R++++ E GI+FLDE DKI +G S+EGVQRDLLP+VEGS VSTK+G Sbjct: 235 DQIKREALKRTEEGGIIFLDEIDKIAVNSRSDGRNDPSKEGVQRDLLPIVEGSIVSTKFG 294 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 SI TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L+ LN+ LILT +++L+ QY Sbjct: 295 SIKTDHILFIAAGAFHLTKPSDLIPELQGRFPLRVELEPLNEDALYLILTKPKNSLLEQY 354 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 K L+ TE + L F E +I A+A A N DIGARRL TV+E+VLEDISF+A + Sbjct: 355 KALLATEEMQLSFDEAAIRAMARYAQRANEKTEDIGARRLHTVVEKVLEDISFNAHLHKN 414 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 V + V + + D+ +IL Sbjct: 415 SAVTVTEAMVNTILLPLVEDEDLARYIL 442 >gi|74025438|ref|XP_829285.1| heat shock protein HslVU ATPase subunit [Trypanosoma brucei TREU927] gi|70834671|gb|EAN80173.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma brucei] Length = 496 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 195/467 (41%), Positives = 278/467 (59%), Gaps = 41/467 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64 + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+ + LR +++PKNILLVGPTGV Sbjct: 36 DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRES 117 GKT ISRR+A+L APF+KVE TK+TE+G+ G++VE II DL A + I RE Sbjct: 96 GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155 Query: 118 RRDEVREQASINAEERIL----------------DALVGKTATSNTR-----EVFRKKLR 156 E+ + N D+ + S++R E F++K + Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGSSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMS 211 + D D+ V D + P + SV +L++ L +GS G K ++ Sbjct: 216 T-QFKD---DMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKR 269 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ P ++ RL+D + + + E G+VF+DE DK+V + VS GV Sbjct: 270 VEEALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGV 329 Query: 272 QRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 Q+DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH + +D++ E+QGR PVRV + +L Sbjct: 330 QQDLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALK 389 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + D R IL + + NL+LQ K LMKTE I L+FT D++D LA V +N+ +IGARRL Sbjct: 390 EEDIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLH 449 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+ERV+++ SF+ D + K VVIDAE VR G + D+ +IL Sbjct: 450 TVVERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496 >gi|261335254|emb|CBH18248.1| heat shock protein HslVU, ATPase subunit, HslU putative [Trypanosoma brucei gambiense DAL972] Length = 496 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 195/467 (41%), Positives = 278/467 (59%), Gaps = 41/467 (8%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGV 64 + SPR+I S LD YI+GQ + KRAVAI+LRNRWRR+Q+ + LR +++PKNILLVGPTGV Sbjct: 36 DLSPRKIASILDSYIVGQAEGKRAVAISLRNRWRRRQIEDEGLRRDILPKNILLVGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-------INIVRES 117 GKT ISRR+A+L APF+KVE TK+TE+G+ G++VE II DL A + I RE Sbjct: 96 GKTEISRRMAKLTEAPFVKVEATKYTEVGFKGKDVESIIEDLYSNAKTKAKRRLEIEREK 155 Query: 118 RRDEVREQASINAEERIL----------------DALVGKTATSNTR-----EVFRKKLR 156 E+ + N D+ + S++R E F++K + Sbjct: 156 EAHELALEIVFNGWHSCRSASGSFGPSTRNSGSGDSSAEEDKNSSSRDNVTFEEFKEKYK 215 Query: 157 DGEISDKEIDIEVADTSSDISNFDIPGGA--SVGILNLSELFSKVMGS---GRKKKIRMS 211 + D D+ V D + P + SV +L++ L +GS G K ++ Sbjct: 216 T-QFKD---DMVVIDVTQQPKGNTKPNASINSVEMLSVGILLG--LGSESRGVKTRVTKR 269 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V++ P ++ RL+D + + + E G+VF+DE DK+V + VS GV Sbjct: 270 VEEALPLATQEALSRLVDETQISALARTLAEQDGVVFIDEIDKVVTEPASANADVSSTGV 329 Query: 272 QRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 Q+DLLPL+EGS+V+ K GS I+TD+ILFI SGAFH + +D++ E+QGR PVRV + +L Sbjct: 330 QQDLLPLIEGSNVTLKDGSQISTDNILFICSGAFHTVKTSDMIAELQGRLPVRVEMHALK 389 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 + D R IL + + NL+LQ K LMKTE I L+FT D++D LA V +N+ +IGARRL Sbjct: 390 EEDIRRILCEPKFNLLLQQKALMKTENIDLEFTPDAVDELARVTTKVNANAQNIGARRLH 449 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 TV+ERV+++ SF+ D + K VVIDAE VR G + D+ +IL Sbjct: 450 TVVERVMDEYSFNCQDYEGKKVVIDAEVVRKATGSLMNNIDLAKYIL 496 >gi|71657012|ref|XP_817038.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi strain CL Brener] gi|70882205|gb|EAN95187.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] Length = 490 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 188/454 (41%), Positives = 282/454 (62%), Gaps = 27/454 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65 SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+ +LR +++PKNILLVGPTGVG Sbjct: 41 LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRR+A++ APF+KVE TK+TE+G+ G++V+ II DL A + + + + Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNA----KTKAKRRLEAE 156 Query: 126 ASINAEERILDALVGKTAT------SNTREVFRKKLRDG------EISDKEIDIEV-ADT 172 + A LD + G AT + R + + DG +++ +E + + Sbjct: 157 RAEEALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYKTEF 216 Query: 173 SSDISNFDI----PG----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 D+ DI P G S ++++ LF K ++ V++ P +++D Sbjct: 217 KDDLVTVDIVPPPPKHNRQGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDIL 276 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 +RL+D + + + E+ G+VF+DE DK+V + N VS GVQ+DLLPL+EGS V Sbjct: 277 ERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSDV 336 Query: 285 STKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 + K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + + Sbjct: 337 TLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPKF 396 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 NL+LQ KELMKTE + ++FTED++D LA V +N+ +IGARRL TV+ERV++ SF+ Sbjct: 397 NLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSFN 456 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++K VVIDA V+ + D+ ++L Sbjct: 457 CQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490 >gi|71659239|ref|XP_821343.1| heat shock protein HslVU, ATPase subunit HslU [Trypanosoma cruzi strain CL Brener] gi|70886720|gb|EAN99492.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] Length = 490 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 188/454 (41%), Positives = 281/454 (61%), Gaps = 27/454 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65 SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+ +LR +++PKNILLVGPTGVG Sbjct: 41 LSPRKIVSILDTYIIGQSEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRR+A++ APF+KVE TK+TE+G+ G++V+ II DL A + + + + Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNA----KTKAKRRLEAE 156 Query: 126 ASINAEERILDALVGKTAT------SNTREVFRKKLRDG------EISDKEIDIEV-ADT 172 + A LD + G AT + R + + DG +++ +E + + Sbjct: 157 RAEEALAMTLDVVYGSWATRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYKTEF 216 Query: 173 SSDISNFDI----PG----GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDES 224 D+ DI P G S ++++ LF K ++ V++ P +++D Sbjct: 217 KDDLVTVDIVPPPPKHNRQGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDIL 276 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 +RL+D + + + E+ G+VF+DE DK+V + N VS GVQ+DLLPL+EGS V Sbjct: 277 ERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSDV 336 Query: 285 STKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 + K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + Sbjct: 337 TLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPRF 396 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 NL+LQ KELMKTE + ++FTED++D LA V +N+ +IGARRL TV+ERV++ SF+ Sbjct: 397 NLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSFN 456 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D ++K VVIDA V+ + D+ ++L Sbjct: 457 CQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490 >gi|322817707|gb|EFZ25352.1| heat shock protein HslVU, ATPase subunit HslU, putative [Trypanosoma cruzi] Length = 490 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 187/455 (41%), Positives = 277/455 (60%), Gaps = 29/455 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVG 65 SPR+IVS LD YIIGQ + KRAVAI+LRNRWRR+Q+ +LR +++PKNILLVGPTGVG Sbjct: 41 LSPRKIVSILDTYIIGQPEGKRAVAISLRNRWRRRQVKDKELRRDILPKNILLVGPTGVG 100 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV------------------ 107 KT ISRR+A++ APF+KVE TK+TE+G+ G++V+ II DL Sbjct: 101 KTEISRRMAKITDAPFVKVEATKYTEVGFKGKDVDSIIEDLYMNAKTKAKRRLEAERAEE 160 Query: 108 --DVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEISDK 163 + +++V S R + D G A T T E F+ K + E D Sbjct: 161 ALAMTLDVVYGSWVTRRRASGGDARSKYDEDGEDGGRAPFTDVTLEEFKAKYK-TEFKDD 219 Query: 164 EIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDE 223 + +++ T + G S ++++ LF K ++ V++ P +++D Sbjct: 220 LVTVDIVPTPPKHNR----QGWSKAEMDIAGLFGSASEVRLKTRVTKRVEEAVPLVLQDI 275 Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283 +RL+D + + + E+ G+VF+DE DK+V + N VS GVQ+DLLPL+EGS Sbjct: 276 LERLLDETQISTLARTLAEDDGVVFIDEIDKVVTDAANNDADVSSTGVQQDLLPLIEGSD 335 Query: 284 VSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 V+ K G+ I+TD+ILFI SGAFH+++ +D++ E+QGR PVRV L++L + D R IL + + Sbjct: 336 VTLKDGTQISTDNILFICSGAFHLAKTSDMIAELQGRLPVRVELQALKEEDMRRILREPK 395 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 NL+LQ KELMKTE + ++FTED++D LA V +N+ +IGARRL TV+ERV++ SF Sbjct: 396 FNLLLQQKELMKTEKVDIEFTEDAVDELARVVTTVNANGQNIGARRLHTVIERVMDKYSF 455 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + D ++K VVIDA V+ + D+ ++L Sbjct: 456 NCQDYEDKKVVIDANVVKEATSTLHTNIDLAKYLL 490 >gi|218296680|ref|ZP_03497398.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus Y51MC23] gi|218242993|gb|EED09526.1| heat shock protein HslVU, ATPase subunit HslU [Thermus aquaticus Y51MC23] Length = 416 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 186/433 (42%), Positives = 274/433 (63%), Gaps = 17/433 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P EIV EL ++I+GQ+ AK+AVA+ALRNR+RR++LP ++ E+ PKNIL++GPTGV Sbjct: 1 MNLTPAEIVKELSKHIVGQEAAKKAVAVALRNRYRRKKLPPEVAREITPKNILMIGPTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRLARLAGAPF+KVE TKFTE+GYVGR+V+ I+RDL + + +V E + +V E Sbjct: 61 GKTEIARRLARLAGAPFVKVEATKFTEVGYVGRDVDAIVRDLAEASYQLVLEEMKKKVEE 120 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG 184 +A AEE + L A +R G + D + + + GG Sbjct: 121 KALAFAEEELATLLRASIA----------DVRSGRL-DGLYVEVQVEEEVGLPFMGVLGG 169 Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 + G + E+ ++ R + RM+V++ L ++RLID + + ++ + + Sbjct: 170 EAFG--GMGEMLKGLLPK-RPVRRRMTVREAREVLKNQHAERLIDKEELKEEARRRAQEE 226 Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAF 304 GIVF+DE DK+ R+ G VS EGVQRDLLP+VEG+ VST+ G ++T+H+LFIA+GAF Sbjct: 227 GIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPIVEGTVVSTRIGPVSTEHVLFIAAGAF 286 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 HV++P+DL+PE+QGRFP+RV L L +F IL + E++LI QY EL++ +G L F + Sbjct: 287 HVAKPSDLIPELQGRFPIRVELSPLGPEEFYRILKEPENSLIRQYTELLRADGTELVFED 346 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 +++ +A A N + DIGARRL TV+ERVLE++SF + V I YV + Sbjct: 347 EALWTIAQAAHRANQELEDIGARRLATVLERVLEEVSFQT---ELGRVEITRAYVEKRLE 403 Query: 425 DFPSETDMYHFIL 437 + D+ F+L Sbjct: 404 AVFASPDVTRFVL 416 >gi|283953975|ref|ZP_06371504.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 414] gi|283794580|gb|EFC33320.1| heat shock protein HslVU, ATPase subunit HslU [Campylobacter jejuni subsp. jejuni 414] Length = 403 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 174/410 (42%), Positives = 272/410 (66%), Gaps = 22/410 (5%) Query: 42 QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 QL +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE Sbjct: 2 QLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVES 61 Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV----------GKTATSNTREVF 151 ++RDL + A+N+V+ +R++ +++ E +IL+ L+ + N+ E Sbjct: 62 MVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKM 121 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIR 209 R KLR+G++ + I+IE++ D +N ++P GA I+ KV+G G KK + Sbjct: 122 RTKLRNGDLDESIIEIEISQNMFD-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKK 173 Query: 210 MSVQKCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVS 267 K +++E+ ++++D +++ ++++ EN GI+F+DE DKI V + N S Sbjct: 174 EMKIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVTSGNSNRQDPS 233 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 +EGVQRDLLP+VEGSSV TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 234 KEGVQRDLLPIVEGSSVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELD 293 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 SL+ ILT +++L+ QY EL+KTE + LDF +++I +A +A N + DIGAR Sbjct: 294 SLDDKALYEILTRPKNSLLKQYSELLKTENLELDFDDEAIKEIAKIASRANEEMQDIGAR 353 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL TV+E++LED+SF A + K V+D + V +GD D+ +IL Sbjct: 354 RLHTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403 >gi|322488928|emb|CBZ24177.1| heat shock protein HslVU, ATPase subunit HslU,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 503 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 198/474 (41%), Positives = 279/474 (58%), Gaps = 48/474 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64 N SPR I LD YI+GQ KRAVAIALRNRWRR+QL ADLR E++PKN+LL+GPTGV Sbjct: 36 NLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRREVVPKNMLLIGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119 GKT ISRR+AR+ APFIKVE TK+TE+G+ G++VE II DL A R E+ R Sbjct: 96 GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155 Query: 120 -------DEVREQASINAEERILDALV---GKT---------------------ATSNTR 148 D V S++ R +D + GK + Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSAGKAEEVTAAAADDSAAEAEESQQQQQQHNF 215 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKI 208 E FR+ D I++ + I D S+ + P S+ + ++ L +G G K++ Sbjct: 216 EYFREHYLDEPITNDMVTI---DISAPQAPTKPPKEGSIDLQSVGMLLG--LG-GEPKRL 269 Query: 209 RMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 ++SV K P ++ D+LID +V+ + + E G+VF+DE DK+VA S Sbjct: 270 KVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSANA 329 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VS GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR PVR Sbjct: 330 DVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLPVR 389 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V +NS + Sbjct: 390 VELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQGQN 449 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++ERV++ SF+ + + K V I+A+ VR ++ ++L Sbjct: 450 IGARRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503 >gi|148926638|ref|ZP_01810319.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845157|gb|EDK22252.1| putative heat shock protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 403 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 171/410 (41%), Positives = 273/410 (66%), Gaps = 22/410 (5%) Query: 42 QLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 QL +L+D+++PKNIL++G TGVGKT I+RRLA++ G PFIK+E +K+TE+G+VGR+VE Sbjct: 2 QLSPELQDDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVES 61 Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV----------GKTATSNTREVF 151 ++RDL + A+N+V+ +R++ +++ E +IL+ L+ + N+ E Sbjct: 62 MVRDLANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKM 121 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIR 209 R KLR+G++ + I+IE++ D +N ++P GA I+ KV+G G KK + Sbjct: 122 RTKLRNGDLDESTIEIEISQNMFD-TNPNLPPEMGAMQDIV-------KVIGVGSKKVKK 173 Query: 210 MSVQKCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFLDEFDKI-VARDSGNGIGVS 267 K +++E+ ++++D +++ ++++ EN GI+F+DE DKI V+ + N S Sbjct: 174 EMKIKDAKNALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPS 233 Query: 268 REGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLK 327 +EGVQRDLLP+VEGS+V TK G++ TDHILFIA+GAFH+S+P+DL+PE+QGRFP+RV L Sbjct: 234 KEGVQRDLLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELD 293 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 SL+ ILT +++L+ QY +L+KTE + L+F +++I +A +A N + DIGAR Sbjct: 294 SLDDKALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGAR 353 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 RL TV+E++LED+SF A + K V+D + V +GD D+ +IL Sbjct: 354 RLHTVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL 403 >gi|154332754|ref|XP_001562639.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059642|emb|CAM41762.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania braziliensis MHOM/BR/75/M2904] Length = 503 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 283/478 (59%), Gaps = 56/478 (11%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64 + SPR I LD YI+GQ KRAVAIALRNRWRR+QL A+LR E++PKN+LL+GPTGV Sbjct: 36 DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDAELRKEVVPKNMLLIGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119 GKT ISRR+AR+ APFIKVE TK+TE+G+ G++VE II DL A R E+ R Sbjct: 96 GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155 Query: 120 -------DEVREQASINAEERILD-ALVG-----------------------KTATSNTR 148 D V S++ R +D +L+G + +T Sbjct: 156 EALNMALDTVYSAWSVSQRMRGMDRSLLGAGKAEEGTSAAADDSASESEESPQQPQPHTF 215 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG---ASVGILNLSELFSKVMG-SGR 204 E FR+ ++ I D + I++ + ++ GG SVG+L +G G Sbjct: 216 EYFREHYQEEPIKDDMVTIDITAPQA-VTKPPKEGGIDLQSVGML---------LGLGGE 265 Query: 205 KKKIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260 K++++SV K P ++ D+LID +V+ + + E G++F+DE DK+VA S Sbjct: 266 PKRLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVIFVDEIDKVVAEPS 325 Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGR 319 VS GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR Sbjct: 326 SANADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGR 385 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PVRV L++L ++DFR ILT+ + NL+ Q +E+MKTE I + FTED ++ LA V +N+ Sbjct: 386 LPVRVELQALTENDFRRILTEPKFNLLRQQEEMMKTEKIEVVFTEDGVNELAKVTCAVNA 445 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++ERV++ SF+ D + K V I+A+ V ++ ++L Sbjct: 446 QGQNIGARRLNTILERVMDPYSFNCEDYEGKKVEINAKVVHEATERLQKNVNLAKYLL 503 >gi|302769446|ref|XP_002968142.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii] gi|300163786|gb|EFJ30396.1| hypothetical protein SELMODRAFT_440320 [Selaginella moellendorffii] Length = 510 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 280/473 (59%), Gaps = 62/473 (13%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53 +P ++V+ LDR+I+GQ AKRAVA+AL NRWRR ++P+ R+E++P Sbjct: 58 LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI + Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177 Query: 114 VRESRRDEVREQASINAEERILDALVGKTAT-------SNTREVFRKKLRDGEISDKEID 166 RE R + ++ E RILDAL+G T +++ E RK + GEI ++++ Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 ++V + ++ GG + I +L K + S + ++ ++V + L E ++ Sbjct: 238 LDVPEGGRVRVPIEVTGGG-LPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296 Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266 + D + +D+I Q E+ GIVF+DE DKIV G Sbjct: 297 HLQSDQIIKDAIRVHASVFDLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 S EGVQRDLLP++EG SGAFH +P+D+L E+QGR P+RV L Sbjct: 357 SAEGVQRDLLPIIEG-------------------SGAFHSCKPSDMLAELQGRLPIRVEL 397 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA--VNLNSTVGDI 384 K L ++D ILT+ E N+I Q + LM TE + L F++D+I LA+VA ++N+++ +I Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457 Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 GARRL TV+E+V+EDISF+A + + ID + VR +G+ +TD+ F+L Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVRDAVGELLKKTDLSKFVL 510 >gi|146078307|ref|XP_001463511.1| ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania infantum JPCM5] gi|25956190|emb|CAD19161.1| regulatory subunit of the HslVU complex [Leishmania infantum] gi|25956192|emb|CAD21590.1| regulatory subunit of the HslVU complex [Leishmania infantum] gi|25956194|emb|CAD21591.1| regulatory subunit of the HslVU complex [Leishmania infantum] gi|134067597|emb|CAM65876.1| putative heat shock protein HslVU, ATPase subunit HslU [Leishmania infantum JPCM5] gi|322496930|emb|CBZ32000.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 503 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 197/478 (41%), Positives = 279/478 (58%), Gaps = 56/478 (11%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64 + SPR I LD YI+GQ KRAVAIALRNRWRR+QL ADLR E++PKN+LL+GPTGV Sbjct: 36 DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLSDADLRKEVVPKNMLLIGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119 GKT ISRR+AR+ APFIKVE TK+TE+G+ G++VE II DL A R E+ R Sbjct: 96 GKTEISRRMARITDAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155 Query: 120 -------DEVREQASINAEERILDALVGKTATS------------------------NTR 148 D V S++ R +D + T + + Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQPQQQQHNF 215 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG---ASVGILNLSELFSKVMG-SGR 204 E FR+ D I++ + I++ + + GG SVG+L +G G Sbjct: 216 EYFREHYLDEPITNDMVTIDI-NAPQAPTKPPKEGGIDLQSVGML---------LGLGGE 265 Query: 205 KKKIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260 K++++SV K P ++ D+LID +V+ + + E G+VF+DE DK+VA S Sbjct: 266 PKRLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPS 325 Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGR 319 VS GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR Sbjct: 326 SANADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGR 385 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PVRV L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V +NS Sbjct: 386 LPVRVELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNS 445 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++ERV++ SF+ + + K V I+A+ VR ++ ++L Sbjct: 446 QGQNIGARRLNTILERVMDPYSFNCEEYEGKRVEINAKMVREATEKLQKNVNLAKYLL 503 >gi|302773914|ref|XP_002970374.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii] gi|300161890|gb|EFJ28504.1| hypothetical protein SELMODRAFT_411355 [Selaginella moellendorffii] Length = 521 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 182/458 (39%), Positives = 270/458 (58%), Gaps = 62/458 (13%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALR-------------NRWRRQQLPADLRDELMP 53 +P ++V+ LDR+I+GQ AKRAVA+AL NRWRR ++P+ R+E++P Sbjct: 58 LTPAKVVALLDRHIVGQTGAKRAVAVALHSVVLKFLSRLHAGNRWRRHRIPSQYREEILP 117 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 KNIL++GPTG GKT I+RRLA++A APFIKVE TKFTE+G+ GR+V+QIIRDLV+ AI + Sbjct: 118 KNILMIGPTGCGKTEIARRLAKMADAPFIKVEATKFTEVGFHGRDVDQIIRDLVENAILL 177 Query: 114 VRESRRDEVREQASINAEERILDALVGKTAT-------SNTREVFRKKLRDGEISDKEID 166 RE R + ++ E RILDAL+G T +++ E RK + GEI ++++ Sbjct: 178 QREKVRTRISKEVEEAVENRILDALIGLTLAIEEDNVDTSSLETLRKAYKKGEIDNRKLV 237 Query: 167 IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 ++V + ++ GG + I +L K + S + ++ ++V + L E ++ Sbjct: 238 LDVPEGGRVRVPIEVTGGG-LPINDLIFKIEKALKSPKVERREVTVAEARQMLSEMEVEK 296 Query: 227 LIDMDTVHRDSI-------------------QMVENYGIVFLDEFDKIVARDSGN-GIGV 266 + D + +D+I Q E+ GIVF+DE DKIV G Sbjct: 297 HLQSDQIIKDAIRVHASVFGLVSLDVNGFHLQATESDGIVFIDEIDKIVTTSEARFGADA 356 Query: 267 SREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 S EGVQRDLLP++EG SGAFH +P+D+L E+QGR P+RV L Sbjct: 357 SAEGVQRDLLPIIEG-------------------SGAFHSCKPSDMLAELQGRLPIRVEL 397 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA--VNLNSTVGDI 384 K L ++D ILT+ E N+I Q + LM TE + L F++D+I LA+VA ++N+++ +I Sbjct: 398 KGLTRTDLYRILTEPEINMIKQQQLLMATESVELVFSDDAIKELANVAAEASVNTSLDNI 457 Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 GARRL TV+E+V+EDISF+A + + ID + V H Sbjct: 458 GARRLHTVIEKVVEDISFNAPERAGQAYHIDKQKVTGH 495 >gi|281494437|ref|NP_980167.2| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC 10987] gi|290782531|gb|AAS42775.2| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus ATCC 10987] Length = 393 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 165/398 (41%), Positives = 250/398 (62%), Gaps = 38/398 (9%) Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 +A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V+++A A + Sbjct: 1 MAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKAEEQANQ 60 Query: 133 RI-----------------LDALVGKTATSNT-------------REVFRKKLRDGEISD 162 R+ L+ L G SN R+ +KL G + D Sbjct: 61 RLVEIJVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVERKLAAGLLED 120 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGS---GRKKKIRMSVQKCYPEL 219 + + IEV + S S FD+ G + + ++ F +GS + KK ++SV++ L Sbjct: 121 EIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTKKRKLSVKEARKVL 176 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+V Sbjct: 177 TNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPIV 235 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 236 EGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKILI 295 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LED Sbjct: 296 EPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLED 355 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +SF AS++ + + I +YV + D+ FIL Sbjct: 356 LSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 393 >gi|1359912|emb|CAA59020.1| heat shock induced protein HtpO [Lactobacillus leichmannii] Length = 391 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/389 (43%), Positives = 238/389 (61%), Gaps = 38/389 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD+YI+GQ +AK++VAIAL NR+RR QLP D++ ++ PKNIL+ GPTGVGKT Sbjct: 5 TPKQIVDLLDKYIVGQNEAKKSVAIALYNRYRRAQLPEDVQKDITPKNILMAGPTGVGKT 64 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA + APF+KVE TKFTE+GYVGR+VE ++RDL + A+ IV + +V QA Sbjct: 65 EIARRLADIVDAPFVKVEATKFTEVGYVGRDVESMVRDLANEAVRIVEKEEFVKVEGQAI 124 Query: 128 INAE------------------------ERILDALVGKTATSNTREV----------FRK 153 A E I L G + T EV + Sbjct: 125 RQANKTLVRLLVPGVKRNNRQNQMQQMQEMIQSLLAGGGMSEETEEVTDEIRNQRLSVAE 184 Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQ 213 KL G + ++E+ IEV +N +G+ S L M +K K + V Sbjct: 185 KLDRGLLENEEVTIEVEQAPK--ANPMGDMMGQMGMDMSSMLGD--MLPKKKVKRTLPVS 240 Query: 214 KCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQR 273 + L+++E +L++ D +++ ++ GI+F+DE DKI A D N GVSREGVQR Sbjct: 241 QARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRNSAGVSREGVQR 300 Query: 274 DLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 D+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+RV L +L K D Sbjct: 301 DILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPIRVELDALTKDD 360 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDF 362 F IL D +++L+ QY L+K +G+ L F Sbjct: 361 FVRILKDPQNSLLKQYIALLKADGVDLVF 389 >gi|218510050|ref|ZP_03507928.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli Brasil 5] Length = 209 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 141/209 (67%), Positives = 171/209 (81%) Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY 288 D + + R++++ EN GIVFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKY Sbjct: 1 DNEVIQREAVRSTENDGIVFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKY 60 Query: 289 GSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 G + TDHILFIASGAFHVS+P+DLLPE+QGR P+RV L+ LNK DFR ILT+TE++LI Q Sbjct: 61 GPVKTDHILFIASGAFHVSKPSDLLPELQGRLPIRVELRPLNKEDFRRILTETEASLIRQ 120 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ LM+TE + LDFTED+IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D Sbjct: 121 YRALMETESLSLDFTEDAIDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRS 180 Query: 409 EKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + IDA YVR H+GD TD+ FIL Sbjct: 181 GTAITIDAAYVREHVGDLAQNTDLSRFIL 209 >gi|157864974|ref|XP_001681195.1| ATP-dependent hsl protease ATP-binding subunit hslU; heat shock protein HslVU, ATPase subunit HslU gi|68124490|emb|CAJ02387.1| putative ATP-dependent hsl protease ATP-binding subunit hslU [Leishmania major strain Friedlin] Length = 504 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 196/476 (41%), Positives = 276/476 (57%), Gaps = 51/476 (10%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGV 64 + SPR I LD YI+GQ KRAVAIALRNRWRR+QL ADLR E++PKN+LL+GPTGV Sbjct: 36 DLSPRAITKILDAYIVGQDAGKRAVAIALRNRWRRRQLRDADLRKEVVPKNMLLIGPTGV 95 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR---ESRR-- 119 GKT ISRR+AR+ APFIKVE TK+TE+G+ G++VE II DL A R E+ R Sbjct: 96 GKTEISRRMARITNAPFIKVEATKYTEVGFKGKDVESIIEDLYTNAKLKARRALEAERHA 155 Query: 120 -------DEVREQASINAEERILDALVGKTATS-------------------------NT 147 D V S++ R +D + T + + Sbjct: 156 EALNMALDTVYSAWSVSQRMRAMDRSLLSTGKAEEVTAAAADDSAAEAEESQQQQQQQHN 215 Query: 148 REVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGG-ASVGILNLSELFSKVMGSGRKK 206 E FR+ D I++ + I DI+ P A G ++L + + G K Sbjct: 216 FEYFREHYLDEPITNDMVTI-------DINAPQAPTKPAKEGGIDLQSVGMLLGLGGEPK 268 Query: 207 KIRMSVQK----CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 ++++SV K P ++ D+LID +V+ + + E G+VF+DE DK+VA S Sbjct: 269 RLKVSVTKRVADAVPLATQEALDKLIDEASVNTLARALAEEEGVVFVDEIDKVVAEPSSA 328 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIASGAFHVSRPADLLPEIQGRFP 321 VS GVQ+DLLPL+EGS+V+ K GS I TD+ILFI SGAFHV + +D++ E+QGR P Sbjct: 329 NADVSSTGVQQDLLPLIEGSNVTMKDGSVIATDNILFICSGAFHVVKTSDMIAELQGRLP 388 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 VRV L++L + DFR ILT+ + NL+ Q +E++KTE I + FTED ++ LA V +NS Sbjct: 389 VRVELQALTEEDFRRILTEPKFNLLRQQEEMLKTEKIDVVFTEDGVNELAKVTCAVNSQG 448 Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++ERV++ S + + + K V I+AE VR ++ ++L Sbjct: 449 QNIGARRLNTILERVMDPYSCNCEEYEGKRVEINAEMVREATEKLQKNVNLAKYLL 504 >gi|209882757|ref|XP_002142814.1| heat shock protein HslVU, ATPase subunit HslU [Cryptosporidium muris RN66] gi|209558420|gb|EEA08465.1| heat shock protein HslVU, ATPase subunit HslU, putative [Cryptosporidium muris RN66] Length = 608 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 274/479 (57%), Gaps = 49/479 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 SP +IV LD YIIGQ AKRAVA AL NR RR+++ LR ++PKNILL+GPTGVGK Sbjct: 130 SPSDIVQYLDEYIIGQTKAKRAVANALINRLRRKKIKDVSLRSSIIPKNILLIGPTGVGK 189 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++ APFIKVE T+FTE+G+ G++V+ II+DL ++++ + + E+RE Sbjct: 190 TEIARRLSQFVDAPFIKVEATRFTEVGFHGKDVDNIIKDLAEISLKRQKLKLQSEMREFV 249 Query: 127 SINAEERILDALVGKTAT------SNTREVFRKKLRDGEISDKEIDIEVAD-----TSSD 175 E+++L+A++ + +N + + +R G ++DK IDI + D Sbjct: 250 EKIVEKKLLEAILISLSISPSSISTNEWFFWLQHIRHGYLNDKVIDICIPDGLHLNKYKS 309 Query: 176 ISNFDIPGGASVGILNL---------------------SELFSKVMGSGRK--------- 205 I N + + GI N + F+ K Sbjct: 310 ICNLNEYSKDNNGIFNFNFSDDVYNIDSNNIDEKSSITTNYFTNRHSGNLKYSNNSVENQ 369 Query: 206 --KKIRMSVQKCYPELMRDESDRLI--DMDTVHRDSIQMVENYGIVFLDEFDKI-VARDS 260 I+++V + L+++E + ++ D + + + +I+ E GIVF+DE DKI + R+S Sbjct: 370 VSNHIKVTVAEARSILIQNEINSILLQDSEFLMKRAIESTEQEGIVFIDEIDKICIKRNS 429 Query: 261 G-NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGR 319 NG S EGVQRDLL L+EG+ V+TK G + TD ILFIASGAFH + +D++ E+QGR Sbjct: 430 HFNGPDASSEGVQRDLLSLIEGTVVATKIGDVKTDDILFIASGAFHNVKSSDMIAELQGR 489 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 P++ L++L +D+ IL + + +L+ QY L+ E I L FT+DSI+ +A +A LNS Sbjct: 490 LPIKAELEALVYTDYIRILKEPKYSLLKQYSALLDAENIYLTFTDDSIEEMARIAFELNS 549 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL ++E V EDI+F+ Q +++ ID YV + D+ +IL Sbjct: 550 YTENIGARRLHMIVEAVTEDITFNTDKYQLNSIIFIDKSYVINQLNSLILRYDLQKYIL 608 >gi|290977973|ref|XP_002671711.1| predicted protein [Naegleria gruberi] gi|284085282|gb|EFC38967.1| predicted protein [Naegleria gruberi] Length = 634 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 269/469 (57%), Gaps = 74/469 (15%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRD--ELMPKNILL 58 +P+EIV+ LD++I+GQ+DAK+AV++ALRNR+RR+ L L D E++PKNIL+ Sbjct: 164 LTPQEIVNCLDKHIVGQKDAKKAVSVALRNRYRRKILIDWAKSEKTLLDPSEIIPKNILM 223 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +G TG GKT I+RRLA+L APF+KVE TK+TE+GY GR+V+ I RDLVDV+IN++R + Sbjct: 224 IGSTGCGKTEIARRLAKLVSAPFLKVEATKYTELGYHGRDVDTIARDLVDVSINVLRNNI 283 Query: 119 RDEVR------------EQASINAEE--------------RILDALVGKTATSNTR---- 148 D + EQ EE RI+ ++G +N R Sbjct: 284 TDLFKQFLNRPPSSTPSEQEEGTLEEPDLFGSYLQQLIEYRIIHLMIGTKNIANLRNGTI 343 Query: 149 EVFRKKLRDGEISDKEIDIEVADTSS----------------------DISNFDIPGGAS 186 + + LR+GE+ D++I++ + + S D S F +P Sbjct: 344 KDYLNMLRNGELDDRKIEVSMPEKKSSLGLSQFSDVFDAVKGSFGSSLDNSKFSMPD--- 400 Query: 187 VGILNLSELFSKV------MGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 + NLS+ + + + + KK+ M++++ L+ E D+ ++ ++ ++ Sbjct: 401 --VANLSDHQTPLDSMLGQLNPQKYKKVEMTIKEAKVRLVELEMDKFLNSPLFIEEARKI 458 Query: 241 VENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 E+ GIVF+DE DKI + S EGVQRDLLPL+EG +++TKYG + TDH+LF Sbjct: 459 AESDGIVFIDEIDKICGSPEKKAVQGDASGEGVQRDLLPLLEGCTINTKYGPVKTDHVLF 518 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLN-KSDFRLILTDTESNLILQYKELMKTEG 357 IASGAFH +P+DL+ E QGR PVR+ L +LN + +LT E NL+ Q LM +EG Sbjct: 519 IASGAFHQQKPSDLMSEFQGRLPVRIMLTALNTPEELYQVLTMPEFNLVRQNISLMNSEG 578 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 I L F++ + +A+ + N+ ++GARRL ++E+V+++I A + Sbjct: 579 ISLVFSDAANREIANFSALCNAGNDNLGARRLIGIIEKVIDEIRRCAKE 627 >gi|196017997|ref|XP_002118704.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens] gi|190578418|gb|EDV18809.1| hypothetical protein TRIADDRAFT_62722 [Trichoplax adhaerens] Length = 330 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 138/330 (41%), Positives = 221/330 (66%), Gaps = 5/330 (1%) Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI---EV 169 +VR+ EV+ +A A+ +++D LVGK A+ NT+ ++ KKL E+ D+E+ I E Sbjct: 1 MVRDDFYIEVKSKALYEAKLKLVDCLVGKEASENTKNIYLKKLDAKELDDREVKISIDEQ 60 Query: 170 ADTSSDISNFDIPG--GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL 227 + FD+PG G+ +G++N+ ++ K G+ ++K +++ + + L++ E+++L Sbjct: 61 PNKGQSFPTFDVPGMPGSQMGVVNIGDMLGKTFGAKKQKLVKLKIPEAIKHLIKQETEKL 120 Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 ID + +I++ E GIVFLDE DKI + ++REGVQRDLLPL+EG+ ++TK Sbjct: 121 IDEQLIIDKAIKITEEEGIVFLDEIDKIAGGNVNKKNDINREGVQRDLLPLIEGTIINTK 180 Query: 288 YGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 YG I T+HILFIASGAFH++RP+DLLPE+QGR P+RV L L+K D IL + E++L Sbjct: 181 YGPIKTNHILFIASGAFHLARPSDLLPELQGRLPIRVELSPLSKDDLLKILKEPENSLPK 240 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QY EL+KTEG+ L F E + +A A ++N+ V +IGARRL T++E++LE++SF+A+++ Sbjct: 241 QYSELLKTEGVNLKFAESGLKCIAKYAAHINNEVENIGARRLYTLLEKILEEVSFTANEI 300 Query: 408 QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + KT+ IDA++V ++ D+ FIL Sbjct: 301 KGKTINIDAKFVEKNLDKITLSEDLSKFIL 330 >gi|163785493|ref|ZP_02180085.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879239|gb|EDP73151.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/282 (51%), Positives = 200/282 (70%), Gaps = 14/282 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+P++IV EL++Y+IGQ +AK++VAIALRNRWRRQQLP DLRDE++PKNIL++GPTGVGK Sbjct: 4 FTPKQIVEELNKYVIGQYEAKKSVAIALRNRWRRQQLPEDLRDEVVPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA L APFIKVE TKFTE+GYVGR+VE IIR+L + + +V+E + EV E+A Sbjct: 64 TEIARRLANLVKAPFIKVEATKFTEVGYVGRDVEAIIRELAESSFKMVKEEKMAEVEEKA 123 Query: 127 SINAEERILDALV------------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 AEE+ILD LV +T S RE FR+ LR+G++ D+ ++IEV + + Sbjct: 124 KKLAEEKILDYLVPRKIRRFSNIEENETEESPAREKFREMLREGKLDDRIVEIEVEEKPT 183 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 + PG + L +LFS + S +KK+ +M+V+ + L + E+++LIDMD V Sbjct: 184 VVGGVIAPGMEDIE-NQLKDLFSSLAPS-KKKRRKMTVKDAFKYLKQQEAEKLIDMDEVA 241 Query: 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLL 276 ++I+ EN GIVF+DE DK+ + SG+G VSREGVQRDLL Sbjct: 242 SEAIRRAENLGIVFIDEIDKVAGKSSGSGPDVSREGVQRDLL 283 >gi|294874673|ref|XP_002767043.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative [Perkinsus marinus ATCC 50983] gi|239868471|gb|EEQ99760.1| ATP-dependent hsl protease ATP-binding subunit hslu, putative [Perkinsus marinus ATCC 50983] Length = 1405 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 171/467 (36%), Positives = 263/467 (56%), Gaps = 39/467 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P+++V LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GK Sbjct: 941 APKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGCGK 1000 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA + GAP +KV TK+TE+G++G + + +I +L D + ++ R+ EV+ +A Sbjct: 1001 TEIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEA 1060 Query: 127 SINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 A E + + + G+ + + +++ K+ D D EI+IE T + Sbjct: 1061 RQLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKE--DPRTMDTEIEIESHLTHPAPIDPS 1118 Query: 181 IPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PGG G + S SGR + K M + + L RD+ Sbjct: 1119 RPGGIFDGGEGSRGRKDQASPSPVSGRDVADGRHLYKPGTNRMHNAEEALRWSKLTVRDA 1178 Query: 238 IQMV-ENY-----------------------GIVFLDEFDKIVA--RDSGNGIGVSREGV 271 + +V E+Y G+VF+DEFDK+++ R++ +G G R GV Sbjct: 1179 MSLVTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGV 1238 Query: 272 QRDLLPLVEGSSVST-KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 Q++LL L+EG+ V+T + G I+T+HILFI +GAF S+PA ++PE+QGR P+R LK L Sbjct: 1239 QKELLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLT 1298 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DF ILT L +Q + L+K EG+ + F +++ +A A LN + + GARRLQ Sbjct: 1299 TEDFYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQ 1358 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +VM +LE+I F A V ID + V+ + +E+D+ +++ Sbjct: 1359 SVMSTLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTESDLSKYVI 1405 >gi|218679700|ref|ZP_03527597.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CIAT 894] Length = 191 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 133/191 (69%), Positives = 160/191 (83%) Query: 247 VFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHV 306 VFLDE DKI ARD G G GVSREGVQRDLLPLVEG++VSTKYG + TDHILFIASGAFHV Sbjct: 1 VFLDEIDKIAARDGGMGAGVSREGVQRDLLPLVEGTTVSTKYGPVKTDHILFIASGAFHV 60 Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 S+P+DLLPE+QGR P+RV L++LNK DFR ILT+TE++LI QY+ LM+TE + L+FT+D+ Sbjct: 61 SKPSDLLPELQGRLPIRVELRALNKEDFRRILTETEASLIRQYRALMETERLSLEFTDDA 120 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 IDALADVAV+LNS+V +IGARRLQTVMERVL+DIS++A D + IDA YVR H+GD Sbjct: 121 IDALADVAVHLNSSVENIGARRLQTVMERVLDDISYNAPDRGGTAITIDAAYVREHVGDL 180 Query: 427 PSETDMYHFIL 437 TD+ FIL Sbjct: 181 AQNTDLSRFIL 191 >gi|294877694|ref|XP_002768080.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative [Perkinsus marinus ATCC 50983] gi|239870277|gb|EER00798.1| ATP-dependent hsl protease ATP-binding subunit hslU, putative [Perkinsus marinus ATCC 50983] Length = 567 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 169/467 (36%), Positives = 263/467 (56%), Gaps = 39/467 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P+++V LD +IIGQ DAKR VAIA+R+RWRRQQ+P A LR EL+P NILL GP+G GK Sbjct: 103 APKDLVKHLDEFIIGQNDAKRVVAIAVRDRWRRQQIPDAGLRKELLPTNILLEGPSGSGK 162 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA + GAP +KV TK+TE+G++G + + +I +L D + ++ R+ EV+ +A Sbjct: 163 TEIARRLADVIGAPLVKVVATKYTEVGFIGEDTQTMIHELADSSYDMERKRVMSEVQVEA 222 Query: 127 SINAEERILDALV------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 A E + + + G+ + + +++ K+ D D EI+IE T + Sbjct: 223 RQLAIEAVARSYLCTPEGTGEDSVTAAKDLIEKE--DPRTMDTEIEIESHLTHPAPIDPS 280 Query: 181 IPGG---ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 PGG G + S SGR + K + + + L RD+ Sbjct: 281 RPGGIFDGGEGSRGRKDQASPSPVSGRDVADGRQLYKPGTNRLHNAEEALRWSKLAVRDA 340 Query: 238 IQMV-ENY-----------------------GIVFLDEFDKIVA--RDSGNGIGVSREGV 271 + +V E+Y G+VF+DEFDK+++ R++ +G G R GV Sbjct: 341 MSLVTEHYASILIIDREPEIRERARVTCEERGMVFIDEFDKLISEERETASGFGSKRRGV 400 Query: 272 QRDLLPLVEGSSVST-KYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 Q++LL L+EG+ V+T + G I+T+HILFI +GAF S+PA ++PE+QGR P+R LK L Sbjct: 401 QKELLSLIEGTVVTTPRLGRISTEHILFICAGAFTTSKPAQIMPELQGRLPIRSVLKPLT 460 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DF ILT L +Q + L+K EG+ + F +++ +A A LN + + GARRLQ Sbjct: 461 TEDFYRILTGVRYALPMQQQALLKVEGVDIQFDVEALQEIAKSAFELNRSSANTGARRLQ 520 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +VM +LE+I F A V ID + V+ + +++D+ +++ Sbjct: 521 SVMSTLLEEIKFDAGSGGPTEVRIDKDKVKATVAALMTKSDLSKYVI 567 >gi|301632118|ref|XP_002945138.1| PREDICTED: ATP-dependent hsl protease ATP-binding subunit hslU-like [Xenopus (Silurana) tropicalis] Length = 490 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 138/296 (46%), Positives = 197/296 (66%), Gaps = 2/296 (0%) Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201 A S R+VFRKKLR+G++ DKEI+I++A+ + P G L +FS+ MG Sbjct: 197 AADSTARQVFRKKLREGQLDDKEIEIDLAEARPQLEIMG-PAGMEEMAEQLRGMFSQ-MG 254 Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSG 261 R+K ++ + L + + +L++ D + ++ E GIVF+DE DK+ AR Sbjct: 255 QERRKTRKLKIADALKLLTEEAAAKLVNEDEIKTRALANAEQNGIVFIDEIDKVAARQET 314 Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321 +G VSR+GVQRDLLPLVEG++VSTKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP Sbjct: 315 SGADVSRQGVQRDLLPLVEGTTVSTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFP 374 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 +RV L SL+ DF ILT T ++L+ QY+ L+ TEG+ L+FT + I LA +A +N Sbjct: 375 IRVELGSLSVQDFEAILTQTHASLVKQYQALLATEGVALEFTPEGITRLAHIAFEVNERT 434 Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL TVMER+L+++SF A++ +TVVIDA YV + + D+ FIL Sbjct: 435 ENIGARRLSTVMERLLDEVSFDAANRAGQTVVIDAAYVNERLQSLSQDEDLSRFIL 490 >gi|289811631|ref|ZP_06542260.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 296 Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 144/292 (49%), Positives = 197/292 (67%), Gaps = 13/292 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILD L+ + S R+ FRKKLR+G++ DKEI+I +A Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDKEIEINLAAAPMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L +F +G ++K ++ ++ L+ +E+ +L++ + + + Sbjct: 184 VEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMKLLVEEEAAKLVNPEELKQ 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VS + Sbjct: 242 DAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSNQ 293 >gi|257457891|ref|ZP_05623050.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema vincentii ATCC 35580] gi|257444604|gb|EEV19688.1| ATP-dependent hsl protease ATP-binding subunit HslU [Treponema vincentii ATCC 35580] Length = 296 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 140/297 (47%), Positives = 212/297 (71%), Gaps = 6/297 (2%) Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI-PGGASVGILN--LSELFSKVMG 201 S TRE FRK LRDG+ D+ +++ V S + +F+I GG+++ L +S + S +MG Sbjct: 2 SGTREKFRKMLRDGKFEDRMVEVSV--QQSGMPSFEIFAGGSNMEDLESAMSNISSMLMG 59 Query: 202 SGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR-DS 260 +GR K+ SV++ +M D+ D+L+D D + ++ + VE GI+F+DE DK+ ++ + Sbjct: 60 AGRNKRKTTSVKEARTIIMDDQLDKLVDHDKIVEEAKERVEQMGIIFIDEIDKVASKSER 119 Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320 +GI VSREGVQRD+LP+VEGS V+TK+G I+T HILFIA+GAF +S+P+DL+PE QGRF Sbjct: 120 SSGIDVSREGVQRDILPIVEGSKVNTKFGVIDTRHILFIAAGAFSISKPSDLIPEFQGRF 179 Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 P+RV L+SL+ DF+ IL + ++ L QYK L++TEG+ + FT+D+ID ++++A +NST Sbjct: 180 PLRVELESLHAGDFKRILLEPKNALTKQYKALLETEGVTVVFTDDAIDRMSNLAAEVNST 239 Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +IGARRL T+ME +LEDISF+AS++ EK V ID YV + D + D+ +IL Sbjct: 240 MENIGARRLHTIMEMLLEDISFNASNMTEKNVEIDRAYVDERLKDIVQDQDLSRYIL 296 >gi|153803829|ref|ZP_01958415.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3] gi|124120635|gb|EAY39378.1| heat shock protein HslVU, ATPase subunit HslU [Vibrio cholerae MZO-3] Length = 287 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 151/286 (52%), Positives = 195/286 (68%), Gaps = 13/286 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHR 235 + PG + L LF + G KKK +M ++ L+ +E+ +L++ + + Sbjct: 184 VEIMAPPGMEEM-TNQLQGLFQNLAGDT-KKKRKMKIKDALKALVEEEAAKLVNQEELKE 241 Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EG Sbjct: 242 QAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEG 287 >gi|257140628|ref|ZP_05588890.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia thailandensis E264] Length = 476 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 143/305 (46%), Positives = 211/305 (69%), Gaps = 18/305 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTAT--------SNTREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L VG A+ + TR+ FRK+LR+G++ DKEI++++ Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +GSG+K++ ++ +++ L +E+ ++++ + Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS 290 V ++Q VE GIVFLDE DKI +R+ G VSR+GVQRDLLPLVEG++++TK G Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGEAAARVSRQGVQRDLLPLVEGTTINTKCGM 298 Query: 291 INTDH 295 + H Sbjct: 299 EDRSH 303 >gi|213027519|ref|ZP_03341966.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 278 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/280 (45%), Positives = 190/280 (67%), Gaps = 2/280 (0%) Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 G++ DKEI+I +A + PG + L +F +G ++K ++ ++ Sbjct: 1 GQLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLKIKDAMK 58 Query: 218 ELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLP 277 L+ +E+ +L++ + + +D+I VE +GIVF+DE DKI R +G VSREGVQRDLLP Sbjct: 59 LLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLP 118 Query: 278 LVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLI 337 LVEG +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L SDF I Sbjct: 119 LVEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTSDFERI 178 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ +++ +QYK LM TEG+ ++FT+ I +A+ A +N T +IGARRL TV+ER++ Sbjct: 179 LTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNETTENIGARRLHTVLERLM 238 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 E+IS++ASDL + + IDAEYV H+ ++ D+ FIL Sbjct: 239 EEISYNASDLHGQNITIDAEYVSKHLDALVADEDLSRFIL 278 >gi|38046581|gb|AAR09151.1| ATP-dependent hslVU protease [Mannheimia glucosida] Length = 301 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/299 (45%), Positives = 201/299 (67%), Gaps = 3/299 (1%) Query: 139 VGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198 V ++ ++TR+ FRKKLR+G++ DKEI+I+VA S P G L LF Sbjct: 6 VQESDNNSTRQTFRKKLREGQLDDKEIEIDVAAQVS--VEIMTPPGMEEMTSQLQSLFEG 63 Query: 199 VMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 M + KK +M ++ ++ +E+ +L++ + + + +I+ VE +GIVF+DE DKI + Sbjct: 64 -MSPSKTKKRKMKIKDALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKK 122 Query: 259 DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318 +G VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DLLPE+QG Sbjct: 123 GEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQG 182 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R P+RV LKSL K DF ILT+ ++L LQY+ELMKTEG+ ++FT++ I +A+ A +N Sbjct: 183 RLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAESAFRVN 242 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL TV+ER+++ ISF AS+ + + ++ID YV + D D+ FIL Sbjct: 243 EKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLRRFIL 301 >gi|2105144|gb|AAB57895.1| GufA [Treponema denticola] Length = 382 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 147/382 (38%), Positives = 231/382 (60%), Gaps = 47/382 (12%) Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALV-----GKTAT------------- 144 IRDL+ V +V+ +++++EQA N EE +LD L+ KTA Sbjct: 1 IRDLMAVGYTMVKSEMQEKLKEQAEKNTEESLLDLLLPGSNKKKTAATSAQPQDVSQASS 60 Query: 145 --------------------------SNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 S TRE FR LR+ ++ DK +++ ++ + + Sbjct: 61 GTTISLPSVSSTAQAEEHKAQNENDMSGTREKFRVMLRENKLEDKMVEVTISPSMGTPTF 120 Query: 179 FDIPGGASVGILN--LSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 GG+++ + +S + S +MG + K+ +SV++ +M ++ DR++D D V + Sbjct: 121 EFFAGGSNMEDIESAMSNISSMLMGGRKSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDE 180 Query: 237 SIQMVENYGIVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDH 295 + Q VE GI+F+DE DK+ +R D G G VSREGVQRD+LP+VEGS VSTKYG ++T H Sbjct: 181 AKQRVEQMGIIFIDEIDKVASRSDRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRH 240 Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 ILFIA+G F VS+P++L+PE QGRFP+RV L++L+ DF+ IL + ++ L QY EL++T Sbjct: 241 ILFIAAGRFSVSKPSNLIPEFQGRFPLRVELEALHAEDFKRILLEPKNALTKQYAELLET 300 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ ++F +++ID ++ +A ++NS +IGARRL T+ME +LEDISF+AS++ +TV ID Sbjct: 301 EGVKIEFLDEAIDRMSFLAADVNSKNENIGARRLHTIMEMLLEDISFNASEMGGETVKID 360 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 YV + D + D+ +IL Sbjct: 361 VAYVDERLKDIVQDQDLSRYIL 382 >gi|299135729|ref|ZP_07028913.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp. MP5ACTX8] gi|298601853|gb|EFI58007.1| heat shock protein HslVU, ATPase subunit HslU [Acidobacterium sp. MP5ACTX8] Length = 535 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/331 (41%), Positives = 205/331 (61%), Gaps = 34/331 (10%) Query: 137 ALVGKTATSNTREV--FRKKLRDGEISDKEIDIEVADTSSD----ISNFDIPGGASVGIL 190 A+V KT RE R++ R+G + D+ ++IE D + ISN S G Sbjct: 209 AVVPKTDAERAREKDKLRQQFREGRLDDRMVEIETRDRNMPQIEFISNQPPEDMESSG-- 266 Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250 + E+ S + G R +K M V + + L+++E RL+DMD V R +I+ VE+ G+VFLD Sbjct: 267 -MKEMLSGMFGQ-RTRKRPMKVVEAFDYLVQEEEGRLLDMDQVTRLAIERVEDSGMVFLD 324 Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310 E DKI R+ G+G +SREGVQRD+LP+VEG++V+TKYG + TDHILFIA+GAFHVS+P+ Sbjct: 325 EIDKIAGREGGHGPDISREGVQRDILPIVEGTTVNTKYGMVATDHILFIAAGAFHVSKPS 384 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 DL+PE+QGRFP+RV L+ L +DF ILT+ ++L+ Q L++TEG+ L+F ++++ + Sbjct: 385 DLIPELQGRFPIRVELQPLTVADFLRILTEPRASLVKQATALLETEGLTLEFAPEALEEM 444 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL----------------------- 407 A+ A +N T +IGARRL T+ME+VL++ISF A DL Sbjct: 445 ANFAFQVNETTENIGARRLHTIMEKVLDEISFQAPDLVKATEPVAGAKPVPTLLERTTDK 504 Query: 408 -QEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++ + ++ EYV+ + D D+ +IL Sbjct: 505 GTQRVLRVEREYVQQQVADIVKNQDLSRYIL 535 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 117/141 (82%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +PREIV+ELD+Y++GQ AKRAVAIALRNR RRQ+LP +L +E+MPKNIL++G TGVG Sbjct: 18 EMTPREIVAELDKYVVGQAAAKRAVAIALRNRSRRQKLPPELAEEIMPKNILMIGSTGVG 77 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RRLA+L +PF+K+E +KFTE+GYVGR+VE ++RDLV++ I++VRE + DE+ ++ Sbjct: 78 KTEIARRLAKLTNSPFLKIEASKFTEVGYVGRDVESMVRDLVEIGIDMVREEKLDEIEDR 137 Query: 126 ASINAEERILDALVGKTATSN 146 A + AE+R++D LV + + S Sbjct: 138 AELAAEDRLVDLLVQQGSPST 158 >gi|218288290|ref|ZP_03492589.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241649|gb|EED08822.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 260 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 121/257 (47%), Positives = 183/257 (71%), Gaps = 2/257 (0%) Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 IPG + + NL E+ ++ KK+ +M+V++ L ++E+ +LIDMD V ++I Sbjct: 6 IPGMGAESLGNLQEMLGNLLPKSTKKR-KMTVREARKVLTQEEAQKLIDMDAVTAEAIYR 64 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 EN+GI+F+DE DKI R++ +G VSREGVQRD+LP+VEGS+VSTKYG++ TD++LFI Sbjct: 65 AENHGIIFIDEMDKIAGRET-HGPDVSREGVQRDILPIVEGSTVSTKYGAVKTDYMLFIG 123 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 +GAFHV++P+DL+PE+QGRFP+RV L+ L K DF IL + E++LI QY L++TEGI + Sbjct: 124 AGAFHVAKPSDLIPELQGRFPIRVELEPLTKDDFVRILREPENSLIKQYTALLETEGIRV 183 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +FT+++I+ +A++A +N +IGARRL T++E+VLED+SF A ++ + I YV Sbjct: 184 EFTDEAIERIAEMAQKVNEETENIGARRLHTLVEKVLEDLSFEAPEIHLGEIKITRAYVD 243 Query: 421 LHIGDFPSETDMYHFIL 437 +GD D+ FIL Sbjct: 244 EKLGDIVQNRDLSQFIL 260 >gi|167835014|ref|ZP_02461897.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis MSMB43] Length = 280 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 131/282 (46%), Positives = 194/282 (68%), Gaps = 17/282 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EIVSELD++IIGQ AK+AVA+ALRNRWRRQQ+ LR E+ PKNIL++GPTGVGK Sbjct: 1 MTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGK 60 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIK+E TKFTE+GYVGR+V+ I+RDL+++++ RE+ +VR +A Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSKA 120 Query: 127 SINAEERILDAL------VGKTATSN--------TREVFRKKLRDGEISDKEIDIEVADT 172 + AE+RILD L VG A++ TR+ FRK+LR+G++ DKEI++++ Sbjct: 121 TDLAEDRILDVLLPQPRAVGFGASAEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQP 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDT 232 + + PG + + +FS +G G+K++ ++ +++ L +E+ ++++ + Sbjct: 181 TVGMDIMAPPGMEEM-TEQIRSMFSN-LGGGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 238 Query: 233 VHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQR 273 V ++Q VE GIVFLDE DKI +R+ G G VSR+GVQR Sbjct: 239 VKTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQR 280 >gi|291533221|emb|CBL06334.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas hypermegale ART12/1] Length = 208 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 112/208 (53%), Positives = 161/208 (77%) Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 M+++ +++I++ E GI+FLDE DK+ + S +G VSREGVQRD+LP+VEGS+VSTKYG Sbjct: 1 MESIAQEAIELAERNGIIFLDEIDKVAVKGSSSGPDVSREGVQRDILPIVEGSTVSTKYG 60 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIA+GAFH+++P+DL+PE+QGRFP+RV L SL + DF+ ILT+ + L+ QY Sbjct: 61 QMKTDHILFIAAGAFHMAKPSDLIPELQGRFPIRVELTSLTEEDFKRILTEPTNALLKQY 120 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 K L+ TEG+ ++FT+D+I+ LA VA +N + +IGARRL T+ME++LED+SF A +L+E Sbjct: 121 KALLATEGVSIEFTDDAIERLAQVACEVNEQMENIGARRLHTIMEKLLEDLSFDAPELEE 180 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 K VVI+A+YV +G D+ FIL Sbjct: 181 KNVVINADYVNEKLGGIVKNRDLSQFIL 208 >gi|4378705|gb|AAD19633.1| heat shock protein HslU [Buchnera aphidicola] Length = 277 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 125/278 (44%), Positives = 183/278 (65%), Gaps = 2/278 (0%) Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPEL 219 + +KEI+I V ++ + PG + L LF +G +K R+ ++ L Sbjct: 2 LDEKEIEINVLASTMGVEIMAPPGMEEL-TSQLQSLFQN-LGGHKKNTRRLKIKDAVLLL 59 Query: 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 +E+ +LI+ + + +++I VE GIVF+DE DKI R +G VSREGVQRDLLPLV Sbjct: 60 KEEEAAKLINQEEIKKEAINAVEQNGIVFVDEIDKICKRRDSSGPDVSREGVQRDLLPLV 119 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILT 339 EG +VSTKYG + TDHILFIASGAF S P+DL+PE+QGR P++V L+ L +DF ILT Sbjct: 120 EGCTVSTKYGMVKTDHILFIASGAFQTSTPSDLIPELQGRLPIKVELQPLTINDFEKILT 179 Query: 340 DTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 + +++ QYK LMKTEG+ ++FT++ I +A+ A +N ++ +IGARRL T++E+++ED Sbjct: 180 EPTASITAQYKALMKTEGVCINFTKEGIRNIAEAAWKVNESMENIGARRLHTILEKLMED 239 Query: 400 ISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ISF+A D KT+ I++EYV H+ S D+ FIL Sbjct: 240 ISFNACDNVGKTIEINSEYVGKHLDQLISNEDLGRFIL 277 >gi|145636236|ref|ZP_01791905.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|145270401|gb|EDK10335.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] Length = 222 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 116/219 (52%), Positives = 159/219 (72%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L+ DE+ +LI+ + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPL Sbjct: 4 LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 63 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF IL Sbjct: 64 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 123 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T+ ++L QYK LM TEG+ ++FT +++ +A+ A +N +IGARRL TVMER+++ Sbjct: 124 TEPHASLTEQYKALMATEGVNIEFTTEAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 183 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ISFSASD+ +TV IDA YV +G+ D+ FIL Sbjct: 184 KISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 222 >gi|309804156|ref|ZP_07698234.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 11V1-d] gi|308163739|gb|EFO66008.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 11V1-d] Length = 314 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/286 (42%), Positives = 190/286 (66%), Gaps = 8/286 (2%) Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 KL+ G + + E+ + V + D+ G +++S L +M KK++R +S Sbjct: 35 KLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTLS 88 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V+ L+++E+ +LI+ D++++ ++ + GI+F+DE DK VA D VSREGV Sbjct: 89 VKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGV 148 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE+QGRFP+RV L L + Sbjct: 149 QRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRE 208 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 SDF IL D++++L+ QY+ L+KT+GI L FT+++I+ LA +A ++N ++GARRL T Sbjct: 209 SDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAINKLAKIAYDVNQGTDNVGARRLAT 268 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LEDI F D+ E + + +YV +GD + D+ FIL Sbjct: 269 ILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 314 >gi|315158155|gb|EFU02172.1| ATP-dependent protease HslVU, ATPase subunit [Enterococcus faecalis TX0312] Length = 367 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 215/372 (57%), Gaps = 41/372 (11%) Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALV------GKTATSN--------- 146 ++RDLV+ AI IV + + V QA A +R++ LV K A N Sbjct: 1 MVRDLVENAIQIVEKQQYSRVYAQALKKANQRLVKVLVPGIKKEQKQAGGNQFEQMMNMF 60 Query: 147 -------------------TREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187 R+ ++L G + ++E+ IE+ + + + G + Sbjct: 61 NMAQQQQEAQEEVTEDIRTNRQTILEQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQM 119 Query: 188 GILNLSELFSKVMGSGRKKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 GI +L+E + KKKI ++V++ L+++ES ++++ +H ++I++ E+ G Sbjct: 120 GI-DLNETLGAL---SPKKKIERTVTVKEAQELLVKEESAKIVNDADIHSEAIRLAESSG 175 Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 I+F+DE DKI ++ N VSREGVQRD+LP+VEGS V+TKYG + TDHILFIASGAFH Sbjct: 176 IIFIDEIDKITSKSQQNSGEVSREGVQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFH 235 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +S+P+DL+PE+QGRFP+RV L L DF ILT+ + LI QY L+ TE + + FT++ Sbjct: 236 LSKPSDLIPELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKE 295 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +I+ LA +A ++N +IGARRL T++ER+LED+ + A D+Q + I YV + D Sbjct: 296 AIERLAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAPDMQMGEITITEAYVNEKLND 355 Query: 426 FPSETDMYHFIL 437 D+ +IL Sbjct: 356 IVQNEDLSRYIL 367 >gi|153824104|ref|ZP_01976771.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae B33] gi|126518374|gb|EAZ75597.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae B33] Length = 215 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/215 (52%), Positives = 158/215 (73%) Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 E+ +L++ + + +I VEN GIVF+DE DKI R +G VSREGVQRDLLPL+EGS Sbjct: 1 EAAKLVNQEELKEQAIYNVENNGIVFIDEIDKICKRGEVSGPDVSREGVQRDLLPLIEGS 60 Query: 283 SVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +VSTK+G + TDHILFIASGAF V++P+DL+PE+QGR P+RV L++L+ +DF+ ILT+ + Sbjct: 61 TVSTKHGMVRTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPK 120 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++L QY LMKTE + + FTED I +AD A +N T +IGARRL TV+ER++++ISF Sbjct: 121 ASLTEQYVALMKTEQVDVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISF 180 Query: 403 SASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 A++ + VIDA YV+ +G+ + D+ FIL Sbjct: 181 DATEKAGQAFVIDAAYVKARLGELVEDEDLSRFIL 215 >gi|221633581|ref|YP_002522807.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium roseum DSM 5159] gi|221156004|gb|ACM05131.1| heat shock protein HslVU, ATPase subunit HslU [Thermomicrobium roseum DSM 5159] Length = 474 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/219 (52%), Positives = 154/219 (70%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L + E+ RL+D D V +I+ E GIVF+DE DK++ +D G VS EGVQRDLLP+ Sbjct: 256 LTQQEAQRLVDFDAVVEAAIKRAEESGIVFIDEIDKLITKDGEYGPDVSGEGVQRDLLPI 315 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS V T+YG + TDHILFIA+GAFH + P+DL+PE+QGRFP+RV L+ L + D IL Sbjct: 316 VEGSVVMTRYGPVRTDHILFIAAGAFHNASPSDLIPELQGRFPIRVELQRLTEDDLYRIL 375 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T E+ L QY+EL+ EG+ L FTED + +A +A +NS DIGARRL T+ME+V+E Sbjct: 376 TVPENALTWQYRELLSVEGVELVFTEDGLREVARLAALVNSRAEDIGARRLATIMEKVIE 435 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +ISF A +L +TV IDA+YVR +G ++ D+ FIL Sbjct: 436 EISFRAPELAGQTVCIDADYVRQRVGTIVADEDLSKFIL 474 >gi|149919851|ref|ZP_01908327.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica SIR-1] gi|149819298|gb|EDM78731.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica SIR-1] Length = 491 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 112/219 (51%), Positives = 159/219 (72%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L + ++ L+D D V R++++ E G+VFLDE DKI +R++ G VSREGVQRDLLPL Sbjct: 273 LAQQKARSLVDRDEVRREAVRRAEELGVVFLDEIDKICSRENARGADVSREGVQRDLLPL 332 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+VSTKYG + +DH+LFIA+GAFH+++ +DL+PE+QGRFP+RV L SL +++F IL Sbjct: 333 VEGSTVSTKYGPVRSDHVLFIAAGAFHMAKVSDLIPELQGRFPIRVELDSLGEAEFVQIL 392 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 DT+++L+ QY L+ TEG+ ++F D+I LA VA N + +IGARRL TV+E+VL+ Sbjct: 393 RDTDNSLLKQYAALLGTEGVTVEFGADAIAELAKVAATANDQLENIGARRLHTVLEQVLD 452 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++SF AS++ TV I A YVR IG + D+ IL Sbjct: 453 ELSFEASEVGNATVQITASYVRERIGGLLEDRDLSRHIL 491 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/141 (61%), Positives = 112/141 (79%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PR V ELDR++IGQ AKRAVAIALRNRWRRQQ+ DLRDE+ PKNI++VGPTGVGK Sbjct: 15 LTPRRAVKELDRFVIGQHKAKRAVAIALRNRWRRQQVEGDLRDEISPKNIIMVGPTGVGK 74 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L GAPF+K+EV+KFTE+GYVGR+V+ +IRDLV++A +VRE + +V E A Sbjct: 75 TEIARRLAKLTGAPFVKIEVSKFTEVGYVGRDVDSVIRDLVEMAAKLVREEKERDVWEAA 134 Query: 127 SINAEERILDALVGKTATSNT 147 A+E ILD L+ + + T Sbjct: 135 RAEADEAILDILLPPSPGTGT 155 >gi|309805932|ref|ZP_07699962.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 03V1-b] gi|308167671|gb|EFO69820.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 03V1-b] Length = 313 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 121/286 (42%), Positives = 189/286 (66%), Gaps = 8/286 (2%) Query: 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--MS 211 KL+ G + + E+ + V + D+ G +++S L +M KK++R +S Sbjct: 34 KLKKGLLENHEVTLYVESATKANQMNDMIGQMG---MDMSSLMGGLMP---KKRVRRTLS 87 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 V+ L+++E+ +LI+ D++++ ++ + GI+F+DE DK VA D VSREGV Sbjct: 88 VKDARELLIQEEAKKLINYDSLYQKAVVQAQQNGIIFIDEIDKTVAGDKNTTGQVSREGV 147 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 QRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE+QGRFP+RV L L + Sbjct: 148 QRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPELQGRFPIRVELNPLRE 207 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 SDF IL D++++L+ QY+ L+KT+GI L FT+++I LA +A ++N ++GARRL T Sbjct: 208 SDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAYDVNQGTDNVGARRLAT 267 Query: 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++E++LEDI F D+ E + + +YV +GD + D+ FIL Sbjct: 268 ILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGDIITNKDLTKFIL 313 >gi|218512710|ref|ZP_03509550.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli 8C-3] Length = 145 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 111/143 (77%), Positives = 127/143 (88%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 FSPREIVSELDRYIIGQ +AKRAVAIALRNRWRRQQL LRDE+MPKNIL++GPTGVG Sbjct: 3 TFSPREIVSELDRYIIGQHEAKRAVAIALRNRWRRQQLDPSLRDEVMPKNILMIGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT ISRRLA+LAGAPFIKVE TKFTE+GYVGR+VEQIIRDLV+V I +VRE +R EV+ + Sbjct: 63 KTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVEVGIGLVREKKRAEVQAK 122 Query: 126 ASINAEERILDALVGKTATSNTR 148 A ++AEER+LDALVG TA+ TR Sbjct: 123 AHVSAEERVLDALVGTTASPATR 145 >gi|229552213|ref|ZP_04440938.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus rhamnosus LMS2-1] gi|229314399|gb|EEN80372.1| ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus rhamnosus LMS2-1] Length = 311 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 190/294 (64%), Gaps = 8/294 (2%) Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 N R ++L G + D+EI + V D D+ G +GI +LS+ +M K Sbjct: 24 NRRLSVAEQLEKGLLEDREITVAVNDEKKGGGMSDMYG--QMGI-DLSDTIGALM---PK 77 Query: 206 KKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 KK+ M+V++ +++ESD+L++ ++ D+IQ EN GI+F+DE DKI A D Sbjct: 78 KKVERTMTVKEAREIFIKEESDKLVNHADIYHDAIQSAENNGIIFIDEIDKIAAGDKHTS 137 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSREGVQRD+LP+VEGS ++TKYG INTDHILFI SGAF ++P+DL+ E+QGRFP+R Sbjct: 138 GEVSREGVQRDILPIVEGSQINTKYGPINTDHILFIGSGAFAEAKPSDLIAELQGRFPIR 197 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V LK L + DF ILT+ ++ LI QY L+ +G+ + FT+++++ +A++A +N + Sbjct: 198 VELKDLTEQDFVRILTEPDNALIKQYIALIGADGVKITFTKEAVERIAEIATQVNHDTDN 257 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++E++LED+ + D+ +V + +YV IG ++++M +IL Sbjct: 258 IGARRLATILEKLLEDVLYEGPDMAMGSVTVTQQYVDDKIGHIAADSNMTRYIL 311 >gi|33357692|pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) gi|33357693|pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) gi|33357694|pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) gi|33357705|pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) gi|33357706|pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) gi|33357707|pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu (H. Influenzae) Length = 310 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 115/216 (53%), Positives = 153/216 (70%), Gaps = 7/216 (3%) Query: 229 DMDTVHRD-------SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 ++D++ RD +I VE GIVF+DE DKI + +G VSREGVQRDLLPLVEG Sbjct: 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF ILT+ Sbjct: 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++L QYK LM TEG+ + FT D++ +A+ A +N +IGARRL TVMER+++ IS Sbjct: 215 HASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 FSASD+ +TV IDA YV +G+ D+ FIL Sbjct: 275 FSASDMNGQTVNIDAAYVADALGEVVENEDLSRFIL 310 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 78/104 (75%), Positives = 89/104 (85%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 >gi|228909653|ref|ZP_04073476.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 200] gi|228980435|ref|ZP_04140745.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis Bt407] gi|229025269|ref|ZP_04181689.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1272] gi|229123342|ref|ZP_04252546.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 95/8201] gi|228660118|gb|EEL15754.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 95/8201] gi|228736022|gb|EEL86597.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1272] gi|228779255|gb|EEM27512.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis Bt407] gi|228849942|gb|EEM94773.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 200] gi|326941597|gb|AEA17493.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 218 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 + +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+ Sbjct: 1 MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 60 VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LE Sbjct: 120 IEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D+SF AS++ + + I +YV + D+ FIL Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218 >gi|255030307|ref|ZP_05302258.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes LO28] Length = 240 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/228 (45%), Positives = 161/228 (70%) Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L DE+ +LID D + + I E G++F+DE DKI +++ G VSRE Sbjct: 13 VTVREAKKILFEDEASKLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSRE 72 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 GVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L Sbjct: 73 GVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKL 132 Query: 330 NKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL Sbjct: 133 TQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRL 192 Query: 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++E++LED+ F A ++ +++ + YV + D+ FIL Sbjct: 193 HTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFIL 240 >gi|229140470|ref|ZP_04269025.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST26] gi|228643031|gb|EEK99307.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST26] Length = 218 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 158/219 (72%), Gaps = 1/219 (0%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 + +E+ RLIDMD V ++++ E GI+F+DE DKI + S N + VSREGVQRD+LP+ Sbjct: 1 MTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIAGKQS-NSVDVSREGVQRDILPI 59 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+PE+QGRFP+RV L L+ DF IL Sbjct: 60 VEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFVKIL 119 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + ++ LI QY L+ TEGI ++F++++I +A++A +N +IGARRL T+ME++LE Sbjct: 120 IEPDNALIKQYIALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEKLLE 179 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 D+SF AS++ + + I +YV + D+ FIL Sbjct: 180 DLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 218 >gi|307264861|ref|ZP_07546423.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920119|gb|EFN50331.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 226 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 110/219 (50%), Positives = 161/219 (73%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L +E+ LIDMD V ++I+ EN GI+F+DE DKI + G VSREGVQRD+LP+ Sbjct: 8 LESEEAQNLIDMDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPI 67 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 +EG +V TKYG + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV+LK L K DF IL Sbjct: 68 IEGCTVMTKYGPVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVNLKPLTKEDFIRIL 127 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + ++ L QY+EL++TEGI + +T+++I+A+A+VA +N DIGARRL TVME++ E Sbjct: 128 KEPKNALAKQYQELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFE 187 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++SF+A +L + +VI EYV+ + D ++ ++ +IL Sbjct: 188 ELSFNAPELGGQQIVITEEYVKEQLKDSLNKYEVSKYIL 226 >gi|257089962|ref|ZP_05584323.1| heat shock protein hslU [Enterococcus faecalis CH188] gi|256998774|gb|EEU85294.1| heat shock protein hslU [Enterococcus faecalis CH188] Length = 283 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 119/287 (41%), Positives = 187/287 (65%), Gaps = 7/287 (2%) Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR--M 210 ++L G + ++E+ IE+ + + + G +GI +L+E + KKKI + Sbjct: 2 EQLEKGLLDNREVTIEIEEPKKTMPAMN-NGLEQMGI-DLNETLGAL---SPKKKIERTV 56 Query: 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG 270 +V++ L+++ES ++++ +H ++I++ E+ GI+F+DE DKI ++ N VSREG Sbjct: 57 TVKEAQELLVKEESAKIVNDADIHSEAIRLAESSGIIFIDEIDKITSKSQQNSGEVSREG 116 Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLN 330 VQRD+LP+VEGS V+TKYG + TDHILFIASGAFH+S+P+DL+PE+QGRFP+RV L L Sbjct: 117 VQRDILPIVEGSQVNTKYGPLQTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDDLT 176 Query: 331 KSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 DF ILT+ + LI QY L+ TE + + FT+++I+ LA +A ++N +IGARRL Sbjct: 177 ADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHIAYDVNRDTDNIGARRLH 236 Query: 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 T++ER+LED+ + A D+Q + I YV + D D+ +IL Sbjct: 237 TILERLLEDLLYEAPDMQMGEITITEAYVNEKLNDIVQNEDLSRYIL 283 >gi|237838211|ref|XP_002368403.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49] gi|211966067|gb|EEB01263.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii ME49] Length = 567 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%) Query: 202 SGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260 SGR + R ++V++ +LM+ E D +I D V + +++ VE GIVF+DE DKI ++ Sbjct: 328 SGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGG 387 Query: 261 GNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318 NG S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH RP+DLL E+QG Sbjct: 388 RNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSDLLAELQG 447 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R P+RV LKSL ++D R ILT T++NL+ Q L++TE + L FTE++++ +A VA +N Sbjct: 448 RLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEIARVACEVN 507 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +IGARRL T++E+++EDI+F+A + T V +D E VR + ++TD F+L Sbjct: 508 ASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTKTDYTRFVL 567 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 10/178 (5%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70 +V L+R+I+GQ +AKRAVA+ALR RWRR+ + + LR+++ PKNILL+GPTGVGKT ++ Sbjct: 1 MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVA 60 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 RRLA+ APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+ R ++ +R A A Sbjct: 61 RRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMRPAAEHRA 120 Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVG 188 E +IL+AL+GK + R LR G + + + ++ S GGA+ G Sbjct: 121 ERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPS--------GGAASG 169 >gi|221484324|gb|EEE22620.1| ATP-dependent heat shock protein, putative [Toxoplasma gondii GT1] Length = 883 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/240 (47%), Positives = 169/240 (70%), Gaps = 4/240 (1%) Query: 202 SGRKKKIR-MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDS 260 SGR + R ++V++ +LM+ E D +I D V + +++ VE GIVF+DE DKI ++ Sbjct: 644 SGRGSEGRNLTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEIDKICSKGG 703 Query: 261 GNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318 NG S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH RP+DLL E+QG Sbjct: 704 RNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPSDLLAELQG 763 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R P+RV LKSL ++D R ILT T++NL+ Q L++TE + L FTE++++ +A VA +N Sbjct: 764 RLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEIARVACEVN 823 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSETDMYHFIL 437 ++V +IGARRL T++E+++EDI+F+A + T V +D E VR + ++TD F+L Sbjct: 824 ASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTKTDYTRFVL 883 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 122/185 (65%), Gaps = 9/185 (4%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 + + P+ +V L+R+I+GQ +AKRAVA+ALR RWRR+ + LR+++ PKNILL+GPTG Sbjct: 310 SHSLCPQAMVEYLNRFIVGQVEAKRAVAVALRQRWRRRHVNERLREDITPKNILLIGPTG 369 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 VGKT ++RRLA+ APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+ R ++ +R Sbjct: 370 VGKTEVARRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMR 429 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 A AE +IL+AL+GK + R LR G + + + ++ S G Sbjct: 430 PAAEHRAERKILEALLGKMPAEEHQHWLR-HLRCGALDARRVHVDFPQRPS--------G 480 Query: 184 GASVG 188 GA+ G Sbjct: 481 GAASG 485 >gi|58699714|ref|ZP_00374376.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] gi|58533769|gb|EAL58106.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] Length = 199 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/200 (57%), Positives = 156/200 (78%), Gaps = 3/200 (1%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 +DR+IIGQ DAKRAVAIALRNRWRR Q+P LRDE++PKNIL++G TGVGKT I+RRLA+ Sbjct: 1 MDRFIIGQDDAKRAVAIALRNRWRRNQVPFPLRDEIIPKNILMIGHTGVGKTEIARRLAK 60 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135 LAGAPFIK+E TKFTEIGYVGR+V+ IIRDLVD AI +V+E R + ++A I AE+ I+ Sbjct: 61 LAGAPFIKIEATKFTEIGYVGRDVDSIIRDLVDAAIVLVKEKARKALAKKALILAEKTIV 120 Query: 136 DALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG--GASVGILNLS 193 +++VG+ AT ++++FR++LR+ E D E+ I V ++ S + FDIPG G VG++N++ Sbjct: 121 NSMVGENATEESKKIFRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMPGGQVGVMNVT 180 Query: 194 ELFSKVMGSGRKKKIRMSVQ 213 E+ K M +G KK ++VQ Sbjct: 181 EIMGK-MFNGSKKTKTITVQ 199 >gi|221505697|gb|EEE31342.1| hsl and Clp protease, putative [Toxoplasma gondii VEG] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/248 (46%), Positives = 172/248 (69%), Gaps = 8/248 (3%) Query: 194 ELFSKVMGS-GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252 ++ ++GS GR ++V++ +LM+ E D +I D V + +++ VE GIVF+DE Sbjct: 123 KILEALLGSEGRN----LTVKEARKKLMQAELDSMITKDLVVQKALEAVEQEGIVFIDEI 178 Query: 253 DKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310 DKI ++ NG S EGVQRDLLPL+EG++VST+YG + TD+ILFIASGAFH RP+ Sbjct: 179 DKICSKGGRNGYNPDASDEGVQRDLLPLIEGTTVSTRYGDVKTDYILFIASGAFHCVRPS 238 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 DLL E+QGR P+RV LKSL ++D R ILT T++NL+ Q L++TE + L FTE++++ + Sbjct: 239 DLLAELQGRLPIRVTLKSLTENDLRDILTKTQNNLLAQNTALLRTENVELHFTEEAVNEI 298 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGDFPSE 429 A VA +N++V +IGARRL T++E+++EDI+F+A + T V +D E VR + ++ Sbjct: 299 ARVACEVNASVENIGARRLHTIIEKIMEDINFAAPSMAPGTRVEVDLERVRSSVSSLLTK 358 Query: 430 TDMYHFIL 437 TD F+L Sbjct: 359 TDYTRFVL 366 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTGVGKTAIS 70 +V L+R+I+GQ +AKRAVA+ALR RWRR+ + + LR+++ PKNILL+GPTGVGKT ++ Sbjct: 1 MVEYLNRFIVGQVEAKRAVAVALRQRWRRRHIEDERLREDITPKNILLIGPTGVGKTEVA 60 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 RRLA+ APFIKVE TKFTE+G+ GR+V+QII+DLV+VA+ R ++ +R A A Sbjct: 61 RRLAKRLDAPFIKVEATKFTEVGFHGRDVDQIIKDLVEVAVKTQRTKLQEVMRPAAEHRA 120 Query: 131 EERILDALVGKTATSNTREVFRKKLRDGEI 160 E +IL+AL+G + T + RKKL E+ Sbjct: 121 ERKILEALLGSEGRNLTVKEARKKLMQAEL 150 >gi|313619207|gb|EFR90974.1| ATP-dependent hsl protease ATP-binding subunit HslU [Listeria innocua FSL S4-378] Length = 285 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 155/216 (71%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L DE+ +LID D + + I E G++F+DE DKI +++ G VSREGVQRD+LP+ Sbjct: 63 LFEDEASKLIDSDELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNAQVSREGVQRDILPI 122 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+QGRFP+R+ L L + DF IL Sbjct: 123 VEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKIL 182 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 T+ ++ LI QYK L+KTEGI L FT+++++ +A++A +N +IGARRL T++E++LE Sbjct: 183 TEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLE 242 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYH 434 D+ F A ++ +++ + YV + + D+ H Sbjct: 243 DLLFEAPEINMESIKVTENYVNEKLAPIMTNKDLTH 278 >gi|116514249|ref|YP_813155.1| ATP-dependent protease ATP-binding subunit HslU [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275019|sp|Q04A05|HSLU_LACDB RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU gi|116093564|gb|ABJ58717.1| ATP-dependent protease HslVU, ATPase subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 464 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 161/235 (68%), Gaps = 2/235 (0%) Query: 205 KKKIR--MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 KKK++ + V + L+++E +L++ D +++ ++ GI+F+DE DKI A D N Sbjct: 230 KKKVKRTLPVGQARKLLVQEEEKKLVNYDDIYQKAMDRAGQSGIIFIDEIDKITAADKRN 289 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 GVSREGVQRD+LP+VEGS+VSTKYG ++TDHILFIA+GAF S+P+DL+PE+QGRFP+ Sbjct: 290 SAGVSREGVQRDILPIVEGSTVSTKYGPLSTDHILFIAAGAFAESKPSDLIPELQGRFPI 349 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 RV L +L K DF IL D +++L+ QY L+K +G+ L FT +++D +A++A +N Sbjct: 350 RVELNALTKDDFVRILKDPQNSLLKQYIALLKADGVDLVFTAEAVDKIAEIAFEVNQGTD 409 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T++E++LE++ + D++ + I YV + D D+ FIL Sbjct: 410 NIGARRLATILEKLLEEVLYEGPDMEMGQITITQAYVEQKLSDIVKNKDLTKFIL 464 >gi|330722054|gb|EGG99974.1| ATP-dependent hsl protease ATP-binding subunit HslU [gamma proteobacterium IMCC2047] Length = 198 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 109/198 (55%), Positives = 145/198 (73%), Gaps = 1/198 (0%) Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 +E GIVFLDE DK+ S +G VSREGVQRDLLPL+EGS+V+TK G I TDHILFIA Sbjct: 1 MEQNGIVFLDEIDKVAKGSSASGGEVSREGVQRDLLPLIEGSTVNTKLGMIKTDHILFIA 60 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFH+S+P+DL+PE+QGR P+RV L +L+ DF+ ILT+ +++L QY+ LM TEG L Sbjct: 61 SGAFHLSKPSDLIPELQGRLPIRVELNALSPEDFQRILTEPDASLTEQYQALMSTEGFKL 120 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 F++D I +A+VA +N +IGARRL TVMER+LE +SF ASD + K V+ A+YV Sbjct: 121 TFSDDGIKRIAEVAWQVNERTENIGARRLHTVMERLLETVSFEASDAGDNKETVVSADYV 180 Query: 420 RLHIGDFPSETDMYHFIL 437 H+G+ + D+ +IL Sbjct: 181 NDHLGELVQDEDLSRYIL 198 >gi|255994161|ref|ZP_05427296.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum ATCC 49989] gi|255993829|gb|EEU03918.1| ATP-dependent protease HslVU, ATPase subunit [Eubacterium saphenum ATCC 49989] Length = 511 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 119/294 (40%), Positives = 190/294 (64%), Gaps = 6/294 (2%) Query: 146 NTREVFRKKLRDGEISDKEIDIEVADT-SSDISNFDIPG-GASVGILNLSELFSKVMGSG 203 +TRE ++ G++ D+EI+ + + S+I+ D+ G S+ + N+ E S Sbjct: 222 HTREKIKELFYAGKLEDEEIEFTMENAPKSEINQLDLEDRGISIALGNIFENLS----PS 277 Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 +K+K + V + L+ E+ +IDM+ + +++I+ EN GI+F+DE DKI + G Sbjct: 278 KKQKRKGKVSEARTLLINQEAQAMIDMEEIKKNAIENAENNGIIFIDEIDKIASSGYKGG 337 Query: 264 IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVR 323 VSREGVQRD+LP+VEGS V TKYG + T+HILFI +GAFH+S+ ++L+PE+QGRFP+R Sbjct: 338 QDVSREGVQRDILPIVEGSVVKTKYGPVKTNHILFIGAGAFHISKVSELIPELQGRFPIR 397 Query: 324 VHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGD 383 V L +L++ + + IL + E+ +I Q EL++TEG+ + FT+D+ID +A +A N + Sbjct: 398 VDLDNLSEENLKRILVEPENAIIKQNIELLETEGVKVTFTDDAIDEIAKLAYIYNEQREN 457 Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 IGARRL T++++ LEDISF D + K IDA++++ D + D+ FIL Sbjct: 458 IGARRLHTIVDKTLEDISFEVPDEKIKDYTIDAKFIKEKFKDDLKDEDLDRFIL 511 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 80/147 (54%), Positives = 110/147 (74%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGP 61 K T +P+E V+ LD+YIIGQ DAK+ VAIA+RNR+RR +L +++DE+ PKNIL+ GP Sbjct: 6 KNTTVLTPKETVARLDKYIIGQDDAKKKVAIAMRNRYRRAKLSEEMQDEVTPKNILMKGP 65 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TG GKT I+RRLA+L APFIKVE TKFTE+GYVGR+VE +IRDLV ++ VR + ++ Sbjct: 66 TGCGKTEIARRLAKLIDAPFIKVEATKFTEVGYVGRDVESMIRDLVTKSVMDVRMQKINK 125 Query: 122 VREQASINAEERILDALVGKTATSNTR 148 V E+AS E +++A+V K +N + Sbjct: 126 VNEKASKIVNEILINAIVEKYKKNNKQ 152 >gi|256750735|ref|ZP_05491620.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750318|gb|EEU63337.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 208 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 105/208 (50%), Positives = 153/208 (73%) Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 MD V ++I+ EN GI+F+DE DKI + G VSREGVQRD+LP++EG +V TKYG Sbjct: 1 MDEVIEEAIKRAENDGIIFIDEIDKIASSGYTAGPDVSREGVQRDILPIIEGCTVMTKYG 60 Query: 290 SINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + TDHILFIA+GAF+V++ +DL+PE+QGRFPVRV LK L K DF IL + ++ L QY Sbjct: 61 PVKTDHILFIAAGAFNVAKVSDLIPELQGRFPVRVTLKPLTKEDFIKILKEPKNALTKQY 120 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 +EL++TEGI + +T+++I+A+A+VA +N DIGARRL TVME++ E++SF+A +L Sbjct: 121 QELLRTEGIEVKYTDEAIEAIAEVAYLINQQSEDIGARRLHTVMEKLFEELSFNAPELGG 180 Query: 410 KTVVIDAEYVRLHIGDFPSETDMYHFIL 437 + +VI EYV+ + D ++ ++ +IL Sbjct: 181 QQIVITEEYVKEQLKDSLNKYEVNKYIL 208 >gi|153217715|ref|ZP_01951396.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae 1587] gi|124113339|gb|EAY32159.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae 1587] Length = 255 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 110/188 (58%), Positives = 137/188 (72%), Gaps = 11/188 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPG 183 + PG Sbjct: 184 VEIMAPPG 191 >gi|153824210|ref|ZP_01976877.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33] gi|126518268|gb|EAZ75493.1| protease HslVU, ATPase subunit HslU [Vibrio cholerae B33] Length = 228 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 109/188 (57%), Positives = 136/188 (72%), Gaps = 11/188 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA PFIKVE TKFTE+GYVG+ VE IIRDL DVA+ + + ++V+ +A Sbjct: 64 TEIARRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEER+LDAL+ K S+TR+VFRKKLR+G+++DKEI+I VA Sbjct: 124 EELAEERVLDALLPPPRDAWGQAEQKEENSSTRQVFRKKLREGQLNDKEIEINVAVPQMG 183 Query: 176 ISNFDIPG 183 + PG Sbjct: 184 VEIMAPPG 191 >gi|145636237|ref|ZP_01791906.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|145270402|gb|EDK10336.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] Length = 223 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/204 (55%), Positives = 139/204 (68%), Gaps = 11/204 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARA 123 Query: 127 SINAEERILDALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDIEVADTSSD 175 AEERILDAL+ S+TR+ FRKKLR+G++ DKEI+I+V+ S Sbjct: 124 EDAAEERILDALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSM 183 Query: 176 ISNFDIPGGASVGILNLSELFSKV 199 P G L LF + Sbjct: 184 GVEIMAPPGMEEMTNQLQSLFQNL 207 >gi|47094323|ref|ZP_00232023.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes str. 4b H7858] gi|47017294|gb|EAL08127.1| heat shock protein HslVU, ATPase subunit HslU [Listeria monocytogenes str. 4b H7858] Length = 192 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 93/192 (48%), Positives = 142/192 (73%) Query: 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFH 305 ++F+DE DKI +++ G VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH Sbjct: 1 MIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFH 60 Query: 306 VSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +S+P+DL+PE+QGRFP+R+ L L + DF ILT+ ++ LI QYK L+KTEGI L FT++ Sbjct: 61 MSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKE 120 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 +++ +A++A +N +IGARRL T++E++LED+ F A ++ +++ + YV + Sbjct: 121 AVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAP 180 Query: 426 FPSETDMYHFIL 437 D+ FIL Sbjct: 181 IMQNKDLTQFIL 192 >gi|38046595|gb|AAR09162.1| ATP-dependent hslVU protease [Mannheimia ruminalis] Length = 186 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 99/185 (53%), Positives = 135/185 (72%) Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL 312 DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DL Sbjct: 2 DKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDL 61 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 LPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMKTEG+ ++FT++ I +A+ Sbjct: 62 LPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAE 121 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDM 432 A +N +IGARRL TV+ER+++ ISF AS+ + + ++ID YV + D D+ Sbjct: 122 SAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDL 181 Query: 433 YHFIL 437 FIL Sbjct: 182 SRFIL 186 >gi|38018230|gb|AAR08192.1| ATP-dependent hslVU protease [Mannheimia ruminalis] Length = 186 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 99/185 (53%), Positives = 135/185 (72%) Query: 253 DKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL 312 DKI + +G VSREGVQRDLLP++EGS+V+TK+G + TDHILFI SGAF V+RP+DL Sbjct: 2 DKICKKGEHSGGDVSREGVQRDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDL 61 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 LPE+QGR P+RV LKSL K DF ILT+ ++L LQY+ELMKTEG+ ++FT++ I +A+ Sbjct: 62 LPELQGRLPIRVELKSLTKEDFERILTEPNASLTLQYRELMKTEGVEIEFTKEGISRIAE 121 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDM 432 A +N +IGARRL TV+ER+++ ISF AS+ + + ++ID YV + D D+ Sbjct: 122 SAFRVNEKTENIGARRLHTVLERLMDGISFDASERRGEKIIIDESYVSEALNDVVENEDL 181 Query: 433 YHFIL 437 FIL Sbjct: 182 SRFIL 186 >gi|115379327|ref|ZP_01466436.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella aurantiaca DW4/3-1] gi|115363672|gb|EAU62798.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella aurantiaca DW4/3-1] Length = 219 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/216 (49%), Positives = 147/216 (68%), Gaps = 24/216 (11%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 F+PRE+VSELDRYI+GQ AKRAVAIALRNRWRRQ++ DLR+E+ PKNI+++GPTGVGK Sbjct: 4 FTPREVVSELDRYIVGQTAAKRAVAIALRNRWRRQRVADDLREEIHPKNIIMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APF+KVE +KFTE+GYVGR+VE ++RDLV+ AI +VRE ++V+ +A Sbjct: 64 TEIARRLAKLAQAPFVKVEASKFTEVGYVGRDVESMVRDLVEAAIALVREEETEKVKPRA 123 Query: 127 SINAEERILDALVGKTAT----------------------SNTREVFRKKLRDGEISDKE 164 AE+R+++ L G + RE R +LR G + D+E Sbjct: 124 LELAEDRLVEMLSGHAPKSPPPPPPFGFTPPPVSPPSRLGEHEREKLRAQLRAGTLDDQE 183 Query: 165 IDIEVADTSSD-ISNFDIPGGASVGILNLSELFSKV 199 +D+E +D++ + NF G VG+ NL +LF + Sbjct: 184 VDVETSDSAPTFLRNFTGHGMEEVGV-NLQDLFKNM 218 >gi|260577470|ref|ZP_05845419.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2] gi|259020314|gb|EEW23661.1| ATP-dependent protease ATP-binding subunit [Rhodobacter sp. SW2] Length = 185 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 101/187 (54%), Positives = 138/187 (73%), Gaps = 2/187 (1%) Query: 39 RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 RR+QL DLRDE+ PKNIL++GPTGVGKT ISRRLA+LA APF+KVE TKFTE+GYVGR+ Sbjct: 1 RRKQLADDLRDEVYPKNILMIGPTGVGKTEISRRLAKLARAPFLKVEATKFTEVGYVGRD 60 Query: 99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 V+ IIRDLVD A+ R R++V+ +A AE+R+++A+ GK A TRE+FR KL+ G Sbjct: 61 VDSIIRDLVDAAMVETRARMREDVKARAFKAAEDRVIEAIAGKDAREQTREMFRGKLKRG 120 Query: 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPE 218 E+ D I++EVADTS+ FD G +G++NL +LF K+ GR +K +M+V + + Sbjct: 121 ELDDTVIELEVADTSNPFGAFDPTGQGQMGMMNLGDLFGKL--GGRSQKRKMTVAESHEL 178 Query: 219 LMRDESD 225 L+ DE+D Sbjct: 179 LISDEAD 185 >gi|159473805|ref|XP_001695024.1| ATP-dependent subunit of mitochondrial HslUV protease [Chlamydomonas reinhardtii] gi|158276403|gb|EDP02176.1| ATP-dependent subunit of mitochondrial HslUV protease [Chlamydomonas reinhardtii] Length = 460 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 11/242 (4%) Query: 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI-- 264 K + V + L E+++L+ + V R++++ E GIVF+DE DKIV SG + Sbjct: 219 KKTLKVSEARSRLEEAEAEKLLSSEAVTREALRAAEQDGIVFIDEIDKIVEPSSGRVVSG 278 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 GVS EGVQRDLLP++EG +V TK+G ++T+H+LFI SGAFH ++P+D+L E+QGR P+RV Sbjct: 279 GVSSEGVQRDLLPIIEGCTVPTKHGPVSTEHVLFICSGAFHTAKPSDMLAELQGRLPIRV 338 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L+ L +DF ILT+ ++N+I Q +EL+ TEG+ L FT+ ++ A A +A N + +I Sbjct: 339 ELQGLTAADFHRILTEPDNNMIRQQQELLGTEGVRLTFTDGAVRAAASLAEQANRLLDNI 398 Query: 385 GARRLQTVMERVLEDISFS---------ASDLQEKTVVIDAEYVRLHIGDFPSETDMYHF 435 GARRL T++ERVL +ISF+ A+ L V+D V + D + D+ + Sbjct: 399 GARRLHTILERVLAEISFTAPERAAEARAAGLDAFEYVVDEAMVHARLDDLLKKQDLSRY 458 Query: 436 IL 437 +L Sbjct: 459 VL 460 >gi|300214643|gb|ADJ79059.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus salivarius CECT 5713] Length = 205 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 137/201 (68%) Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 +I+ EN GI+F+DE DKI ++ N VSREGVQRD+LP+VEGS +STKYG I TDHI Sbjct: 5 AIKRAENTGIIFIDEIDKIASKSQQNAGQVSREGVQRDILPIVEGSQISTKYGLIKTDHI 64 Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 LFI SGAFH S+P+DL+ E+QGRFP+RV L+ L+ DF ILT+ + L+ QY ++ T+ Sbjct: 65 LFIGSGAFHESKPSDLIAELQGRFPIRVELEDLSVDDFVKILTEPNNALVKQYIAMIGTD 124 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 I + FT ++I +A+VA LN +IGARRL T++E++LED+ F D+Q + I Sbjct: 125 NIDVTFTIEAIHRIAEVAYQLNHDTENIGARRLHTILEKLLEDLLFEGPDMQMGDIKITE 184 Query: 417 EYVRLHIGDFPSETDMYHFIL 437 YV IG + D+ +IL Sbjct: 185 AYVNDKIGSIVEDKDLSQYIL 205 >gi|307264860|ref|ZP_07546422.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920118|gb|EFN50330.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 240 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 98/220 (44%), Positives = 149/220 (67%), Gaps = 26/220 (11%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR LP D ++E+ PKNI++VGPTGVG Sbjct: 3 NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLPDDFKEEVTPKNIIMVGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + +V E+ Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122 Query: 126 ASINAEERILDALVG--KTATSN------------------------TREVFRKKLRDGE 159 A AE+R++D ++G K T N RE R+KLR+GE Sbjct: 123 AKKIAEDRLIDYIIGKRKKQTKNPFEVLFNYPSAEKSEETEEESMQYKREEIRQKLRNGE 182 Query: 160 ISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKV 199 + + ++IEV DTS+ + G+ +NL ++F+ + Sbjct: 183 LDNYVVEIEVTDTSTPMLEMYTNLGSEEMNINLQDIFADI 222 >gi|160357931|emb|CAP19066.1| heat shock protein HslVU, ATPase subunit HslU [Pseudomonas avellanae] Length = 277 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/184 (48%), Positives = 133/184 (72%), Gaps = 1/184 (0%) Query: 191 NLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250 L LF+ MG G+ K ++ V++ + +E+ RL++ + + +++ VE +GIVF+D Sbjct: 9 QLQSLFAN-MGKGKTKSRKLKVKEALKLVREEEAGRLVNDEELKVKALEAVEQHGIVFID 67 Query: 251 EFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310 E DK+ R + G+ VSREGVQRDLLPL+EG +V+TK G + TDHILFIASGAFH+S+P+ Sbjct: 68 EIDKVAKRGNSGGVDVSREGVQRDLLPLIEGCTVNTKLGMVKTDHILFIASGAFHLSKPS 127 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 DL+PE+QGR P+RV LK+L+ DF ILT+ ++L QY+EL+KTEG+ ++F D I L Sbjct: 128 DLVPELQGRLPIRVELKALSPQDFERILTEPHASLTEQYRELLKTEGLKIEFKPDGIKRL 187 Query: 371 ADVA 374 A++A Sbjct: 188 AEIA 191 >gi|255017245|ref|ZP_05289371.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes FSL F2-515] Length = 181 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 133/181 (73%) Query: 257 ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316 +++ G VSREGVQRD+LP+VEGS +STKYG++NT++ILFIA+GAFH+S+P+DL+PE+ Sbjct: 1 SKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAGAFHMSKPSDLIPEL 60 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 QGRFP+R+ L L + DF ILT+ ++ LI QYK L+KTEGI L FT+++++ +A++A Sbjct: 61 QGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDLIFTKEAVERIAEIAFQ 120 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFI 436 +N +IGARRL T++E++LED+ F A ++ +++ + YV + D+ FI Sbjct: 121 VNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENYVNEKLAPIMQNKDLTQFI 180 Query: 437 L 437 L Sbjct: 181 L 181 >gi|46198572|ref|YP_004239.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus HB27] gi|55980599|ref|YP_143896.1| ATP-dependent protease ATP-binding subunit HslU [Thermus thermophilus HB8] gi|46196194|gb|AAS80612.1| ATP-dependent hsl protease ATP-binding subunit hslU [Thermus thermophilus HB27] gi|55772012|dbj|BAD70453.1| heat shock protein HslU [Thermus thermophilus HB8] Length = 416 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 146/219 (66%), Gaps = 3/219 (1%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L ++RLID + + ++ + + GIVF+DE DK+ R+ G VS EGVQRDLLP+ Sbjct: 201 LKNQHAERLIDKEELKEEARRRAQEEGIVFIDEIDKVARREGTVGPDVSGEGVQRDLLPI 260 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEG+ VST+ G I+T+H+LFIA+GAFHV++P+DL+PE+QGRFP+RV L L +F IL Sbjct: 261 VEGTVVSTRIGPISTEHVLFIAAGAFHVAKPSDLIPELQGRFPIRVELSPLGPEEFYRIL 320 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 + E++LI QY EL+K +G L F ++++ A+A A N + DIGARRL TV+E+VLE Sbjct: 321 KEPENSLIRQYTELLKADGTELVFEDEALWAIAQAAHRANQELEDIGARRLATVLEKVLE 380 Query: 399 DISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++SF +DL V I YV + + D+ F+L Sbjct: 381 EVSFQ-TDLGR--VEITRAYVEKRLEAVFASPDLTRFVL 416 >gi|320170276|gb|EFW47175.1| heat shock protein HslVU [Capsaspora owczarzaki ATCC 30864] Length = 732 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 101/210 (48%), Positives = 139/210 (66%), Gaps = 7/210 (3%) Query: 204 RKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNG 263 R +RM + L E+ L++ + R ++Q VE GIVF+++ DKI + Sbjct: 467 RPPVMRMRAKDALSLLAEMEASVLLNDTLIVRSAVQHVEQDGIVFIEDIDKICTPTPSST 526 Query: 264 IG-------VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316 S E VQRDLLPL+EG+ VST +G + TDHILFIASG+F S+P+DLLPE+ Sbjct: 527 SSSRRVVSEASYEPVQRDLLPLIEGTLVSTPFGPVRTDHILFIASGSFRSSQPSDLLPEL 586 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 QGRFP+RV LK+L++SD +LT E+N+I Q ELM+TEG+ L FT ++I +A +A Sbjct: 587 QGRFPIRVQLKALSESDLYQLLTWPEANVIAQQVELMRTEGVALSFTAEAIREIARIAYE 646 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASD 406 +N V +IGARRL T++ERV+EDISFSA D Sbjct: 647 VNGAVENIGARRLNTILERVVEDISFSAPD 676 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/142 (45%), Positives = 100/142 (70%), Gaps = 2/142 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +IV+ELD++++GQ DAKRAVA+ALRNRWRR QLP ++RD ++PKNI+++G TGVGKT Sbjct: 160 TPAQIVAELDKHVVGQVDAKRAVALALRNRWRRHQLPPNMRDVVVPKNIIMIGSTGVGKT 219 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVG--RNVEQIIRDLVDVAINIVRESRRDEVREQ 125 I+RR+A+L APFIKVE T++ +++E I DLV +++ R R +VR++ Sbjct: 220 EIARRMAKLTDAPFIKVEATRYIRSAAANDRQDIEHAIHDLVRLSVQAARTRTRAQVRDK 279 Query: 126 ASINAEERILDALVGKTATSNT 147 E+RI+ ++ + +T Sbjct: 280 IHRAVEDRIIGDIIARRNAEST 301 >gi|270635177|ref|ZP_06222042.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] gi|270317475|gb|EFA28964.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] Length = 164 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 99/163 (60%), Positives = 121/163 (74%), Gaps = 11/163 (6%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 LD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGKT I+RRLA+ Sbjct: 1 LDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGKTEIARRLAK 60 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135 LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR+ + R +A AEERIL Sbjct: 61 LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDAAEERIL 120 Query: 136 DALVGKTAT-----------SNTREVFRKKLRDGEISDKEIDI 167 DAL+ S+TR+ FRKKLR+G++ DKEI+I Sbjct: 121 DALLPPAKNQWGEVESHDNHSSTRQAFRKKLREGQLDDKEIEI 163 >gi|213022300|ref|ZP_03336747.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 171 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 98/168 (58%), Positives = 124/168 (73%), Gaps = 11/168 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDK 163 AEERILD L+ + S R+ FRKKLR+G++ DK Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQLDDK 171 >gi|254756020|ref|ZP_05208051.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Vollum] Length = 178 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 129/177 (72%) Query: 261 GNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320 N + VSREGVQRD+LP+VEGS+V+TKYGS+ TD+ILF+A+GAFH+S+P+DL+P +QGRF Sbjct: 2 SNSVDVSREGVQRDILPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPXLQGRF 61 Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 P+RV L L+ DF IL + ++ LI QY L+ TEGI ++F++++I +A++A +N Sbjct: 62 PIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQD 121 Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRL T+ME++LED+SF AS++ + + I +YV + D+ FIL Sbjct: 122 TDNIGARRLHTIMEKLLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 178 >gi|168054446|ref|XP_001779642.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668956|gb|EDQ55553.1| predicted protein [Physcomitrella patens subsp. patens] Length = 293 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 20/293 (6%) Query: 149 EVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS---ELFSKVMGSGRK 205 E FR+ RDG + +++I +++ D S + +I G + G+ L K + S R Sbjct: 17 EAFRQLYRDGALDNRKIQLDIPDGRSRLP-LEIGGASGFGVNELVFRLPQMEKFLKSQRM 75 Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVA-RDSGNGI 264 +++ +++ P L E ++ +++D + +D+I + E+ GIVF+DE DKIV ++ G Sbjct: 76 ERMEITIADAKPILREIEMEKRLNLDQITKDAIMLAESDGIVFIDEIDKIVTNHETRYGA 135 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 S EGVQRDLLP++EG VS A + D+L E+QGR P+RV Sbjct: 136 DASSEGVQRDLLPIIEGR-VSLPV--------------ACQSDKSTDMLAELQGRLPIRV 180 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 LK L + D ILT+ E+N+I Q + LMKTE I L FT+D+I+ LA VA +N +V +I Sbjct: 181 ELKGLGREDLYRILTEPETNIIRQQQLLMKTEDIHLVFTDDAIEELAKVAAEVNRSVDNI 240 Query: 385 GARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 GARRL TV+ERV+EDISF A + +T ID E V+ +GDF + D+ F+L Sbjct: 241 GARRLHTVVERVVEDISFHAPERSGETYTIDKESVQRAVGDFLKKADLSRFVL 293 >gi|213584973|ref|ZP_03366799.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 167 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/164 (58%), Positives = 121/164 (73%), Gaps = 11/164 (6%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSEL+++IIGQ +AKR+VAIALRNRWRR QL +LR E+ PKNIL++GPTGVGK Sbjct: 4 MTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTGVGK 63 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+LA APFIKVE TKFTE+GYVG+ V+ IIRDL D A+ +VR ++ R +A Sbjct: 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA 123 Query: 127 SINAEERILDALVG-----------KTATSNTREVFRKKLRDGE 159 AEERILD L+ + S R+ FRKKLR+G+ Sbjct: 124 EELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFRKKLREGQ 167 >gi|207109295|ref|ZP_03243457.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori HPKX_438_CA4C1] Length = 191 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 133/179 (74%), Gaps = 3/179 (1%) Query: 224 SDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEG 281 SD L+D + + + ++ E+ G++F+DE DKI +++SG S+EGVQRDLLP+VEG Sbjct: 12 SDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKESGRQ-DPSKEGVQRDLLPIVEG 70 Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S V+TKYGSI T+HILFIA+GAFH+S+P+DL+PE+QGRFP+RV L++L + +ILT T Sbjct: 71 SVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQT 130 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++++I QY+ L+K EG+ + F + +I LA ++ N N DIGARRL T +E+VL+ + Sbjct: 131 KNSIIKQYQALLKVEGVGIAFEDSAIKELAKLSYNANQKSEDIGARRLHTTIEKVLKKL 189 >gi|229123343|ref|ZP_04252547.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 95/8201] gi|228660119|gb|EEL15755.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus 95/8201] Length = 238 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 34/237 (14%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G T SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+ + IEV + S S FD+ G G+ + F +GS KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233 >gi|309807632|ref|ZP_07701576.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a] gi|308169129|gb|EFO71203.1| ATPase, AAA family [Lactobacillus iners LactinV 01V1-a] Length = 173 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/171 (51%), Positives = 126/171 (73%) Query: 256 VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315 +A D VSREGVQRD+LP+VEGS VSTKYG +NT+HILFIA+GAF S+P+DL+PE Sbjct: 1 MAGDKNTTGQVSREGVQRDILPIVEGSIVSTKYGPVNTEHILFIAAGAFAESKPSDLIPE 60 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 +QGRFP+RV L L +SDF IL D++++L+ QY+ L+KT+GI L FT+++I LA +A Sbjct: 61 LQGRFPIRVELNPLRESDFVRILKDSKNSLLKQYESLLKTDGINLIFTQEAICKLAKIAY 120 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 ++N ++GARRL T++E++LEDI F D+ E + + +YV +G + Sbjct: 121 DVNQGTDNVGARRLATILEKLLEDILFDGPDMSEGEITVTEQYVDKKLGRY 171 >gi|229140471|ref|ZP_04269026.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST26] gi|228643032|gb|EEK99308.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus BDRD-ST26] Length = 238 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 34/237 (14%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTTDSQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+ + IEV + S S FD+ G G+ + F +GS KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233 >gi|228909654|ref|ZP_04073477.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 200] gi|228849943|gb|EEM94774.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis IBL 200] Length = 238 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 34/237 (14%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152 +++A A +R+++ LV + TS+T R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+ + IEV + S S FD+ G G+ + F +GS KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQG--TGMEQMGMNFQDALGSFMPKKTK 233 >gi|229025270|ref|ZP_04181690.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1272] gi|228736023|gb|EEL86598.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus AH1272] Length = 238 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 34/237 (14%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVIKV 120 Query: 123 REQASINAEERILDALV-----------------GKTATSNT-------------REVFR 152 +++A A +R+++ LV G SN R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDVEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + D+ + IEV + S S FD+ G G+ + F +GS KK + Sbjct: 181 RKLAAGLLEDEIVSIEVTEQQS--SMFDMLQGT--GMEQMGMNFQDALGSFMPKKTK 233 >gi|228980436|ref|ZP_04140746.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis Bt407] gi|228779256|gb|EEM27513.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus thuringiensis Bt407] gi|326941598|gb|AEA17494.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 238 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 34/237 (14%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E +V Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKV 120 Query: 123 REQASINAEERILDALV---------------------GKTATSNT---------REVFR 152 +++A A +R+++ LV + TS+T R+ Sbjct: 121 QDKAEEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSSQTSDTQEDGEIEKKRQDVE 180 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 +KL G + ++ + IEV + S S FD+ G + + ++ F +GS KK + Sbjct: 181 RKLAAGLLEEEIVSIEVTEQQS--SMFDMLQGTGMEQMGMN--FQDALGSFMPKKTK 233 >gi|237843861|ref|XP_002371228.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii ME49] gi|211968892|gb|EEB04088.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii ME49] gi|221483823|gb|EEE22135.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii GT1] Length = 565 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%) Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 +K +++V++ + ++ + D +TV + EN GIVF+DEFDK+V SG+ Sbjct: 331 QKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAENRGIVFIDEFDKLVEERSGSDSS 390 Query: 266 VSRE---GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 R GVQR+LL L+EG+SV T+ G INTDH+LFIASG+F +P+D++PE+QGR P+ Sbjct: 391 AFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIASGSFLACKPSDIIPELQGRLPI 450 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 R LK L + +F ILT+TE NL+ Q L+ TEG+ L F E + +A + +LN+ Sbjct: 451 RCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKLIFEESGVREIARTSHHLNTMNA 510 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++GARRL+TV+ +VLE F A Q V + E V + + D+ +IL Sbjct: 511 NVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVEERLRPLMEQADLCKYIL 565 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/165 (41%), Positives = 109/165 (66%), Gaps = 1/165 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63 F P EIV+ LD+YI+GQ AK+++AIALR+RWRRQQ+ + LR E+ P N+LL+GP+G Sbjct: 69 FTKDPDEIVAALDKYIVGQDTAKKSLAIALRDRWRRQQVKDEKLRREIAPNNLLLIGPSG 128 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT +++RLA AGAPF+KV T+FTE+G+VG + I+ L A +E + + Sbjct: 129 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYTDEKERVKKLIH 188 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168 +A+ A + + AL + A +++ +V ++DG + D E++I+ Sbjct: 189 GEAAGRARQEVARALRAQGAVNDSEDVIAAMIKDGRLDDVEVEID 233 >gi|221504177|gb|EEE29852.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii VEG] Length = 357 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 143/235 (60%), Gaps = 3/235 (1%) Query: 206 KKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--- 262 +K +++V++ + ++ + D +TV + EN GIVF+DEFDK+V SG+ Sbjct: 123 QKKKVTVKQAIAAVTEHFANEMTDTETVQERARDAAENRGIVFIDEFDKLVEERSGSDSS 182 Query: 263 GIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPV 322 R GVQR+LL L+EG+SV T+ G INTDH+LFIASG+F +P+D++PE+QGR P+ Sbjct: 183 AFRSKRVGVQRELLTLIEGTSVQTQIGVINTDHVLFIASGSFLACKPSDIIPELQGRLPI 242 Query: 323 RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVG 382 R LK L + +F ILT+TE NL+ Q L+ TEG+ L F E + +A + +LN+ Sbjct: 243 RCDLKPLTEENFVQILTETEYNLLDQQTALLATEGVKLIFEESGVREIARTSHHLNTMNA 302 Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ++GARRL+TV+ +VLE F A Q V + E V + + D+ +IL Sbjct: 303 NVGARRLKTVLAKVLEQTKFEAHKRQGSEVRVTKEMVEERLRPLMEQADLCKYIL 357 >gi|325115186|emb|CBZ50742.1| putative ATP-dependent protease ATP-binding subunit [Neospora caninum Liverpool] Length = 670 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 132/212 (62%), Gaps = 3/212 (1%) Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE---GVQRDLLPLVEGSSVS 285 D + V + EN GIVF+DEFDK+V SG+ R GVQR+LL L+EG+SV Sbjct: 459 DTEAVQERARDAAENRGIVFIDEFDKLVEERSGSDSSAFRSKRVGVQRELLTLIEGTSVQ 518 Query: 286 TKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 T+ G +NTDH+LFIASG+F +P+D++PE+QGR P+R LK L + +F ILT+TE NL Sbjct: 519 TQIGVVNTDHVLFIASGSFLAGKPSDIIPELQGRLPIRCDLKPLTEENFVQILTETEYNL 578 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 + Q L+ TEG+ L F E I +A ++ +LN+ ++GARRL+TV+ +VLE F A Sbjct: 579 LDQQTALLATEGVKLTFEESGIREIARISHHLNTMNANVGARRLKTVLAKVLEQTKFEAH 638 Query: 406 DLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 Q V + E VR + + D+ +IL Sbjct: 639 KRQGSEVFVTKEMVRERLQPLMEQADLCKYIL 670 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 111/165 (67%), Gaps = 1/165 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRDELMPKNILLVGPTG 63 F P EIV+ LD+YI+GQ AK+++AIALR+RWRRQQ+ + LR E+ P N+LL+GP+G Sbjct: 160 FTKDPDEIVAALDKYIVGQDAAKKSLAIALRDRWRRQQVKDEKLRQEIAPNNLLLIGPSG 219 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT +++RLA AGAPF+KV T+FTE+G+VG + I+ L A +E + ++ Sbjct: 220 CGKTELAKRLAAFAGAPFVKVAATRFTEVGFVGDDTSSIVHYLAQQAYADEKERMKKVIQ 279 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIE 168 +A+ A + + AL + A ++++EV +++G + D +++I+ Sbjct: 280 GEAANRARQEVARALREQGAMNDSKEVIEAMIKEGRLDDVQVEID 324 >gi|291533222|emb|CBL06335.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Megamonas hypermegale ART12/1] Length = 275 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 144/234 (61%), Gaps = 30/234 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MKL PR++V ELD+YI+GQ AKR+VAIALRNRWR + LP D+RDE++PKNIL++G Sbjct: 1 MKLNEQI-PRQVVEELDKYIVGQSQAKRSVAIALRNRWRSRHLPEDMRDEIIPKNILMIG 59 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 TGVGKT I+RRLA+L APF+KVE TKFTE+GYVGR+VE ++RDL + A+ ++++ + + Sbjct: 60 STGVGKTEIARRLAKLVKAPFVKVEATKFTEVGYVGRDVESMVRDLAESAVRMLKQEKLE 119 Query: 121 EVREQASINAEERILDALVGK---TATSNT--------------------------REVF 151 +V+++A A+ERILD V + +A SN RE Sbjct: 120 QVQDKAKEMAQERILDIYVPEPKSSAVSNPLSAIFGGANKEEESTEKVEEPKYSAGREWC 179 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRK 205 RK+L GE+ + I+I+V ++ + G N+ ++ +M RK Sbjct: 180 RKRLLKGELENDIIEIDVEPKAAPVIGMFAGSGMEDMSNNIQDMIGNLMPKKRK 233 >gi|256750733|ref|ZP_05491618.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256750316|gb|EEU63335.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 173 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 78/136 (57%), Positives = 114/136 (83%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 N++P+EIV ELD+YI+GQ++AK++VA+ALRNR+RR L D ++E+ PKNI++VGPTGVG Sbjct: 3 NYTPKEIVEELDKYIVGQKEAKKSVAVALRNRYRRNLLSDDFKEEVTPKNIIMVGPTGVG 62 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APF+KVE TKFTE+GYVGR+V+ ++RDLV+ A+ +V+E + +V E+ Sbjct: 63 KTEIARRIAKLVEAPFVKVEATKFTEVGYVGRDVDSMVRDLVEAAVRMVKEEKLKKVTEK 122 Query: 126 ASINAEERILDALVGK 141 A AE+R++D +VGK Sbjct: 123 AKKIAEDRLIDYIVGK 138 >gi|270620050|ref|ZP_06221854.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] gi|270317774|gb|EFA29150.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] Length = 188 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 114/149 (76%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L+ DE+ +LI+ + + + +I VE GIVF+DE DKI + +G VSREGVQRDLLPL Sbjct: 39 LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 98 Query: 279 VEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLIL 338 VEGS+VSTK+G + TDHILFIASGAF V+RP+DL+PE+QGR P+RV L +L+ +DF IL Sbjct: 99 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 158 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSI 367 T+ ++L QYK LM TEG+ ++FT +++ Sbjct: 159 TEPHASLTEQYKALMATEGVNIEFTTEAV 187 >gi|218288289|ref|ZP_03492588.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein [Alicyclobacillus acidocaldarius LAA1] gi|218241648|gb|EED08821.1| ATP-dependent protease HslVU (ClpYQ) ATPase subunit-like protein [Alicyclobacillus acidocaldarius LAA1] Length = 194 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/133 (60%), Positives = 108/133 (81%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIV LDRYI+GQ+ AKRAVAIALRNR+RR +L D++ E+ PKNIL++GPTGVGK Sbjct: 7 LTPREIVEYLDRYIVGQKKAKRAVAIALRNRYRRAKLSPDMQAEVTPKNILMIGPTGVGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRL++L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ A+ +V+ + V+ +A Sbjct: 67 TEIARRLSKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETAVRMVKAEHAERVKSEA 126 Query: 127 SINAEERILDALV 139 A +RI++ALV Sbjct: 127 EARANDRIVEALV 139 >gi|310828087|ref|YP_003960444.1| heat shock protein HslVU [Eubacterium limosum KIST612] gi|308739821|gb|ADO37481.1| heat shock protein HslVU [Eubacterium limosum KIST612] Length = 473 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/134 (59%), Positives = 106/134 (79%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 + +P++IV EL+RYIIGQ+ AK+AVA+ALRNR+RR L ++RDE PKNI+++GPTGVG Sbjct: 5 DLTPKKIVEELNRYIIGQEPAKKAVAVALRNRYRRSLLSEEMRDEFTPKNIIMMGPTGVG 64 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT I+RR+A+L APFIKVE TKFTE+GYVGR+VE ++RDLV +I V++ + EV EQ Sbjct: 65 KTEIARRIAKLVSAPFIKVEATKFTEVGYVGRDVESMVRDLVTTSIRKVQQEKMKEVYEQ 124 Query: 126 ASINAEERILDALV 139 A A + ILD LV Sbjct: 125 AEERANKLILDILV 138 >gi|255029338|ref|ZP_05301289.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes LO28] Length = 192 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 129/182 (70%), Gaps = 6/182 (3%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLRNQLTPKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERILDALV-----GKTATSNTRE-VFRKKLRDGEISDKEIDIEVADTSS 174 VR +A NAE+R++ L +T + N E +F + E ++E+D E+ + S Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALFGGMNQPDESPEEEVDQELKNKRS 183 Query: 175 DI 176 I Sbjct: 184 QI 185 >gi|255016909|ref|ZP_05289035.1| ATP-dependent protease ATP-binding subunit HslU [Listeria monocytogenes FSL F2-515] Length = 178 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 111/147 (75%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + L +P++IV +LD+YIIGQ AK++VA+ALRNR+RRQ + +RDE++PKNIL++G Sbjct: 4 LTLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQLMDESIRDEIIPKNILMIG 63 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT I+RR+A++ APF KVE TKFTE+GYVGR+VE ++RDLV+V++ +V+E + Sbjct: 64 PTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVSVRLVKEEKMQ 123 Query: 121 EVREQASINAEERILDALVGKTATSNT 147 VR +A NAE+R++ L T Sbjct: 124 LVRVKAEKNAEKRLIKLLAPSQKKKQT 150 >gi|261884679|ref|ZP_06008718.1| ATP-dependent protease ATP-binding subunit HslU [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 249 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 157/254 (61%), Gaps = 15/254 (5%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N +P+EIV LD Y+IGQ DAKR +A+ALRNR+RR +L ++++++PKNIL++G TGV Sbjct: 1 MNLTPKEIVKFLDDYVIGQDDAKRVIAVALRNRYRRMKLDKSIQEDIIPKNILMIGSTGV 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT I+RRL+++ G PFIKVE +K+TE+G+VGR+VE ++RDL ++N+V++ +R++ + Sbjct: 61 GKTEIARRLSKMFGLPFIKVEASKYTEVGFVGRDVESMVRDLAMASLNLVKKEQREKNSD 120 Query: 125 QASINAEERILDALVGKTATSNTREVFR----------KKLRDGEISDKEIDIEVADTSS 174 + + E++IL+ L+ + + R KL+ GE+ I++++ Sbjct: 121 RINEYIEKKILEKLLPPLPKGASEDKLRDYESSYLRMKDKLQKGELDHLNIELDI----- 175 Query: 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 D S F+ G + + E F KV+G KK + K E ++ + + +DM+++ Sbjct: 176 DQSTFEAGGNLPPDMAAMQESFIKVIGIANKKVKKEFKVKDAREALKMKLAKNLDMESIK 235 Query: 235 RDSIQMVENYGIVF 248 ++++ EN GI Sbjct: 236 TEALKRAENEGIYL 249 >gi|300214644|gb|ADJ79060.1| ATP-dependent hsl protease ATP-binding subunit hslU [Lactobacillus salivarius CECT 5713] Length = 258 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/151 (52%), Positives = 113/151 (74%), Gaps = 1/151 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+IV+ELD+Y+IGQ AKRA+A+ALRNR+RR QLP D+++++ PKN+L++GPTGVGKT Sbjct: 7 TPRQIVAELDKYVIGQDSAKRAIAVALRNRYRRMQLPKDMQEDISPKNLLMIGPTGVGKT 66 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE + RDLV+VA + + +VR QA+ Sbjct: 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMARDLVEVAYRMEQNDAFKQVRAQAA 126 Query: 128 INAEERILDALV-GKTATSNTREVFRKKLRD 157 A +R++ +V K N + LRD Sbjct: 127 QQANKRLVKLIVPAKKKQENPNQYLFNALRD 157 >gi|309807629|ref|ZP_07701573.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 01V1-a] gi|308169126|gb|EFO71200.1| putative ATP-dependent protease HslVU, ATPase subunit [Lactobacillus iners LactinV 01V1-a] Length = 275 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/132 (57%), Positives = 104/132 (78%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT Sbjct: 4 TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I ++ D V+ +A+ Sbjct: 64 EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123 Query: 128 INAEERILDALV 139 +A +R++ LV Sbjct: 124 EHANDRLIKLLV 135 >gi|309804187|ref|ZP_07698265.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus iners LactinV 11V1-d] gi|309805931|ref|ZP_07699961.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus iners LactinV 03V1-b] gi|308163770|gb|EFO66039.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus iners LactinV 11V1-d] gi|308167670|gb|EFO69819.1| putative ATP-dependent protease ATPase subunit ClpY [Lactobacillus iners LactinV 03V1-b] Length = 160 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 76/132 (57%), Positives = 104/132 (78%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV LD YIIGQ AK+AVA+AL NR+RR QLP DL+ E+ PKNIL+ GPTGVGKT Sbjct: 4 TPKQIVELLDNYIIGQDSAKKAVAVALYNRYRRLQLPKDLQQEITPKNILMAGPTGVGKT 63 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGRNVE ++RDLV+ ++ I ++ D V+ +A+ Sbjct: 64 EIARRLAKIVNAPFVKVEATKFTEVGYVGRNVESMVRDLVEESVRISEQAEFDRVKIEAT 123 Query: 128 INAEERILDALV 139 +A +R++ LV Sbjct: 124 EHANDRLIKLLV 135 >gi|167835013|ref|ZP_02461896.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis MSMB43] Length = 156 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 116/156 (74%) Query: 282 SSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 ++++TKYG + TDHILFIASGAFH+++P+DL+PE+QGRFP+RV L+SL+ DF IL T Sbjct: 1 TTINTKYGMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSVKDFEAILVAT 60 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 +++L+ QY+ L+ TE + L+F ++ I LA++A +N +IGARRL TV+E++LE++S Sbjct: 61 DASLVKQYQALLATEDVKLEFADEGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVS 120 Query: 402 FSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 F+A + ++V IDA YV +G+ + D+ ++L Sbjct: 121 FAAGNHAGESVTIDAAYVDRALGEVSKDEDLSRYVL 156 >gi|257457892|ref|ZP_05623051.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii ATCC 35580] gi|257444605|gb|EEV19689.1| heat shock protein HslVU, ATPase subunit HslU [Treponema vincentii ATCC 35580] Length = 155 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 73/123 (59%), Positives = 100/123 (81%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P IV+ELD+YIIGQ AK+AVA+ALRNR RR +L D+R+E+ PKNIL++GPTGVGK Sbjct: 8 LTPPHIVAELDKYIIGQTQAKKAVAVALRNRTRRLKLSEDIREEIAPKNILMIGPTGVGK 67 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T I+RRLA+L+GAPF+KVE TK+TE+GYVGR+VE +IRDL+ V ++V+ ++ ++ QA Sbjct: 68 TEIARRLAKLSGAPFLKVEATKYTEVGYVGRDVESMIRDLMAVGYSMVKSEMQETLKAQA 127 Query: 127 SIN 129 N Sbjct: 128 EKN 130 >gi|229552212|ref|ZP_04440937.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus rhamnosus LMS2-1] gi|229314398|gb|EEN80371.1| possible ATP-dependent Hsl protease, ATP-binding subunit HslU [Lactobacillus rhamnosus LMS2-1] Length = 167 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 71/132 (53%), Positives = 104/132 (78%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++IV +LD+Y+IGQ +AKRAVA+AL NR+RR QL +++E+ PKN+L++GPTGVGKT Sbjct: 6 TPKQIVEKLDQYVIGQDEAKRAVAVALYNRYRRMQLSPKMQEEITPKNLLMIGPTGVGKT 65 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 I+RRLA++ APF+KVE TKFTE+GYVGR+VE ++RDL + A+ + E + +VR +A Sbjct: 66 EIARRLAKIVEAPFVKVEATKFTEVGYVGRDVESMVRDLAETAVAMEEEKQFKKVRVRAE 125 Query: 128 INAEERILDALV 139 A +R++ LV Sbjct: 126 KEANKRLVKILV 137 >gi|254751198|ref|ZP_05203237.1| ATP-dependent protease ATP-binding subunit HslU [Bacillus anthracis str. Vollum] Length = 99 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 67/98 (68%), Positives = 88/98 (89%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++GPT Sbjct: 1 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPT 60 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 GVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE Sbjct: 61 GVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVE 98 >gi|115377937|ref|ZP_01465121.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella aurantiaca DW4/3-1] gi|115365042|gb|EAU64093.1| ATP-dependent hsl protease ATP-binding subunit HslU [Stigmatella aurantiaca DW4/3-1] Length = 142 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/142 (46%), Positives = 102/142 (71%) Query: 296 ILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 +LFIA+GAFHVS+P+DL+PE+QGRFP+RV L+ L+ D IL + ++LI QY L+ T Sbjct: 1 MLFIAAGAFHVSKPSDLIPELQGRFPIRVELEPLSGQDLVRILREPRNSLIRQYTALLAT 60 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 EG+ L+FT+D+++ +A +A N +IGARRL TV+ER+L+++SF AS++ +K + +D Sbjct: 61 EGVELEFTDDAVEEIARIAQLANERTQNIGARRLHTVLERLLDEVSFGASEMGQKALKVD 120 Query: 416 AEYVRLHIGDFPSETDMYHFIL 437 A YVR + + D+ +IL Sbjct: 121 AAYVRERLASIVQDEDLSRYIL 142 >gi|213586931|ref|ZP_03368757.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 131 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 62/131 (47%), Positives = 95/131 (72%) Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 ++P+DL+PE+QGR P+RV L++L SDF ILT+ +++ +QYK LM TEG+ ++FT+ Sbjct: 1 AKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSG 60 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 I +A+ A +N T +IGARRL TV+ER++E+IS++ASDL + + IDAEYV H+ Sbjct: 61 IKRIAEAAWQVNETTENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDAL 120 Query: 427 PSETDMYHFIL 437 ++ D+ FIL Sbjct: 121 VADEDLSRFIL 131 >gi|270720322|ref|ZP_06223384.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] gi|270315319|gb|EFA27622.1| ATP-dependent hsl protease ATP-binding subunit hslU [Haemophilus influenzae HK1212] Length = 179 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/86 (74%), Positives = 73/86 (84%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +PREIVSELD++IIGQ DAKRAVAIALRNRWRR QL LR E+ PKNIL++GPTGVGK Sbjct: 28 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQESLRHEVTPKNILMIGPTGVGK 87 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEI 92 T I+RRLA+LA APFIKVE TK +I Sbjct: 88 TEIARRLAKLANAPFIKVEATKLRKI 113 >gi|223934536|ref|ZP_03626457.1| ATPase AAA-2 domain protein [bacterium Ellin514] gi|223896999|gb|EEF63439.1| ATPase AAA-2 domain protein [bacterium Ellin514] Length = 530 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 124/437 (28%), Positives = 191/437 (43%), Gaps = 94/437 (21%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVG 60 F + PR+I + LDR++I Q +AK+ +++AL + + + +L + ++ +NI+L+G Sbjct: 56 FKFEYKPRDIKAYLDRFVIQQDEAKKVLSVALCDHYHQVRLAFEGKETPNYAKQNIILIG 115 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKT + R +A L G PF+K + TKF+E GYVG +VE ++R+L R + D Sbjct: 116 PTGVGKTYLIRSVADLIGVPFVKGDATKFSETGYVGGDVEDLVREL-------YRRADGD 168 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 R Q I I EID A +SS + D Sbjct: 169 ADRAQYGI-------------------------------IYIDEIDKIAAASSS--TGRD 195 Query: 181 IPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQ 239 + G G +L L E VQ P+ + + ++DM + S Sbjct: 196 VSGRGVQTNLLKLME--------------ETEVQTRSPQDIAGQIQAMMDMSQRGKKSAS 241 Query: 240 MVENYGIVFL-----DEFDKIVARDSGNG-IG-VSREGVQRDLLPLVEGSSVSTKYGSIN 292 + I+F+ D DK+V R IG ++E + + ++E + Sbjct: 242 SINTRHILFIVSGAFDGLDKLVRRRLREATIGFAAKETKEETEIQVLEQAQTK------- 294 Query: 293 TDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 D I F PE GR PVRV +SL D IL +E ++I QY++ Sbjct: 295 -DFIDF------------GFEPEFIGRLPVRVICQSLGVDDLFAILKSSEGSIIRQYEQS 341 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 GI + F ED + +A++A + GAR L TV ERV +I F Q K Sbjct: 342 FAAYGIEVFFREDGLRRIAELAAGEGT-----GARGLMTVCERVFRNIKFQLPSTQVKRF 396 Query: 413 VIDAEYVRLHIGDFPSE 429 ++ E V D P+E Sbjct: 397 LVTRELV-----DNPAE 408 >gi|58699989|ref|ZP_00374555.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] gi|58533493|gb|EAL57926.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] Length = 109 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/107 (57%), Positives = 85/107 (79%), Gaps = 1/107 (0%) Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ L+ +ES+RL+D D + +++I +V N GIVFLDE DKI AR G V+RE Sbjct: 4 VTVKEAREILINEESERLMDEDKIIKEAIDLVSNDGIVFLDEIDKIAARTEVKG-EVNRE 62 Query: 270 GVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316 GVQRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE+ Sbjct: 63 GVQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPEL 109 >gi|45389|emb|CAA47149.1| unnamed protein product [Pseudomonas aeruginosa PAO1] Length = 126 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 90/126 (71%), Gaps = 4/126 (3%) Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 +QGR P+RV LK+L+ +DF ILT+ ++L QY+EL+KTEG+ ++F ED I LA++A Sbjct: 1 LQGRLPIRVELKALSPNDFERILTEPHASLTEQYRELLKTEGLAIEFAEDGIKRLAEIAW 60 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDL----QEKTVVIDAEYVRLHIGDFPSETD 431 +N +IGARRL T++ER+LE++SFSA+DL +K ++IDA YV H+G+ + D Sbjct: 61 QVNEKTENIGARRLHTLLERLLEEVSFSAADLASEHSDKPILIDAGYVNSHLGELAEDED 120 Query: 432 MYHFIL 437 + +IL Sbjct: 121 LSRYIL 126 >gi|323144788|ref|ZP_08079362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Succinatimonas hippei YIT 12066] gi|322415434|gb|EFY06194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Succinatimonas hippei YIT 12066] Length = 428 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 116/423 (27%), Positives = 198/423 (46%), Gaps = 94/423 (22%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P E+ LD Y+IGQ +AK+ +++A+ N ++R + D D EL NILL+GPTG GK Sbjct: 71 TPHELTRHLDDYVIGQDEAKKVLSVAVYNHYKRLKHSMDNSDVELGKSNILLIGPTGSGK 130 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T + + LA+ PF + T TE GYVG +VE +I L+ + Sbjct: 131 TLLVQTLAKFLNVPFAMSDATTLTEAGYVGEDVENVIVRLL----------------QSC 174 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-G 184 N E K + G + EID ++A S + S D+ G G Sbjct: 175 DYNVE----------------------KAKRGIVYIDEID-KIARKSENPSITRDVSGEG 211 Query: 185 ASVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE 242 +L L E + S GRK +P+ ++I++DT Q++ Sbjct: 212 VQQALLKLVEGTVASIPPQGGRK----------HPQ------QQMIEVDTS-----QILF 250 Query: 243 NYGIVFLDEFDKI----VARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 G F D DKI V+++SG G G G + D L L E KY + D ++ Sbjct: 251 ICGGAF-DGLDKIVEKRVSKNSGIGFGAEVLG-ENDKLSLTE------KYRKVEPDDLVK 302 Query: 299 IASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 ++PE GR PV L L++ +L + ++ ++ Q++ +++ EG+ Sbjct: 303 FG-----------IIPEFVGRMPVITALSELDRDSLVRVLREPKNAVVRQFETMLRYEGV 351 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417 L+FTE+++ A+AD+A+ ++ GAR L++V+E +L + + + + +++D + Sbjct: 352 DLEFTEEALKAIADIAIKRHT-----GARGLRSVVEGLLLNTMYDIPSVNDVAKIIVDEQ 406 Query: 418 YVR 420 V+ Sbjct: 407 TVK 409 >gi|229496591|ref|ZP_04390305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas endodontalis ATCC 35406] gi|229316488|gb|EEN82407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas endodontalis ATCC 35406] Length = 420 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 117/428 (27%), Positives = 198/428 (46%), Gaps = 105/428 (24%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P++I + LD+Y++GQ AK+ +++A+ N ++R Q+P D E+ NI++VGPTG GKT Sbjct: 76 PKDIKAFLDQYVVGQDAAKKYLSVAVYNHYKRVLQVPNDEDIEVEKSNIIMVGPTGTGKT 135 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 +++ +AR+ PF + T TE GYVG ++E I+ L+ S Sbjct: 136 LLAQTIARMLDVPFAIADATVLTEAGYVGEDIESILTRLLQ------------------S 177 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFDIPG-GA 185 N +ER + G + EID ++A S + S D+ G G Sbjct: 178 CNYDERAAER--------------------GIVFIDEID-KIARKSDNPSITRDVSGEGV 216 Query: 186 SVGILNLSE--LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+L L E + + GRK +P+ + I ++T H Sbjct: 217 QQGLLKLLEGSIINVPPAGGRK----------HPD------QKFIHVNTRH--------- 251 Query: 244 YGIVFL--DEFD----KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 I+F+ FD KI R + IG EG E S V ++ + H Sbjct: 252 --ILFICAGAFDGIERKIANRLNTRYIGYQEEG---------ERSHVDPQHLLKHVSHQD 300 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 A G L+PEI GR P+ +L L +S + ILT+ ++ +I QY +L +G Sbjct: 301 LRAYG---------LIPEILGRLPILTYLDPLERSTLKSILTEPKNAIIGQYVKLFAMDG 351 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS---ASDLQEKTVVI 414 I L FT++++D + D + ++GAR L++V+E ++ + ++ +D+ E +++ Sbjct: 352 IKLHFTDEALDYIVDKTIK-----EELGARGLRSVVETIMMEAMYTLPGNTDVSE--LLV 404 Query: 415 DAEYVRLH 422 EY + H Sbjct: 405 TREYAQEH 412 >gi|302852753|ref|XP_002957895.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f. nagariensis] gi|300256772|gb|EFJ41031.1| hypothetical protein VOLCADRAFT_107867 [Volvox carteri f. nagariensis] Length = 1789 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 6/157 (3%) Query: 220 MRDESDRLIDMDTVH-RDSIQMVENYGIVFLDE-FDKIVARDSG---NGIGVSREGVQRD 274 M E+ R++ D +I + I F E DKIV S G GVS EGVQRD Sbjct: 189 MDPEAQRIVSPDVATWMSAIASLVGESIWFEAEGIDKIVDPSSVRVVTGGGVSSEGVQRD 248 Query: 275 LLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP-EIQGRFPVRVHLKSLNKSD 333 LLP++EGS V TK+G+++T+H+LFI SGAFH ++P+D+L E+QGR P+RV LK L D Sbjct: 249 LLPIIEGSVVPTKHGNMSTEHVLFICSGAFHTAKPSDMLAEELQGRLPIRVELKGLTAED 308 Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 F ILT+ ++N++ Q + L ++ I DAL Sbjct: 309 FYRILTEPQNNMLRQQQTLPRSRTCIASILVVQADAL 345 >gi|213859666|ref|ZP_03385370.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 79 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/77 (66%), Positives = 65/77 (84%) Query: 262 NGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFP 321 +G VSREGVQRDLLPLVEG +VSTK+G + TDHILFI+SGAF +++P+DL+PE+QGR P Sbjct: 3 SGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFISSGAFQIAKPSDLIPELQGRLP 62 Query: 322 VRVHLKSLNKSDFRLIL 338 +RV L++L SDF IL Sbjct: 63 IRVELQALTTSDFERIL 79 >gi|289805558|ref|ZP_06536187.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 106 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 75/103 (72%) Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 P+RV L++L SDF ILT+ +++ +QYK LM TEG+ ++FT+ I +A+ A +N T Sbjct: 1 PIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNET 60 Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +IGARRL TV+ER++E+IS++ASDL + + IDAEYV H+ Sbjct: 61 TENIGARRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHL 103 >gi|256820836|ref|YP_003142115.1| ATP-dependent protease ATP-binding subunit ClpX [Capnocytophaga ochracea DSM 7271] gi|315224015|ref|ZP_07865856.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga ochracea F0287] gi|256582419|gb|ACU93554.1| Sigma 54 interacting domain protein [Capnocytophaga ochracea DSM 7271] gi|314945986|gb|EFS97994.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga ochracea F0287] Length = 410 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 55/224 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 237 Query: 292 NTDHILFIASGAF------------------------HVSR--------PADL-----LP 314 NT+HILFIA GAF V R P DL +P Sbjct: 238 NTEHILFIAGGAFDGIERVISKRLNMQAVGYNSSKNTQVDRKNLVQYIIPKDLKDFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV ++ L+K R+ILT+ ++ +I QYK+L + +GI D TE+++D + + A Sbjct: 298 EIIGRLPVLTYMNPLDKHTLRMILTEPKNAIIKQYKKLFEMDGIKFDITEEALDFIVEKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 + +GAR L+++ E +L D F + K + I EY Sbjct: 358 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKELTITKEY 396 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ K+ +++A+ N ++R Q P AD E+ N+++VG TG GK Sbjct: 65 TPQEIKKFLDQYVIGQDFTKKILSVAVYNHYKRLQQPDADDEVEIQKSNVIMVGETGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A++ P V+ T TE GYVG +VE I+ L+ A V ++ R Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAADYDVEKAER 177 >gi|294053547|ref|YP_003547205.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM 45221] gi|293612880|gb|ADE53035.1| ATPase AAA-2 domain protein [Coraliomargarita akajimensis DSM 45221] Length = 533 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 4/111 (3%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQLP--ADLRDELMPKNILLV 59 +FN P+EI L+RY+I Q +AK+ +++A+ + + RQQ+ AD E +NILL+ Sbjct: 66 SFNLKPKEIRDYLNRYVIRQDEAKKVISVAICDHYNHVRQQISGKADSSTEYSKQNILLL 125 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTGVGKT + + +ARL G PF+K + TKF+E GYVG +V+ ++RDLV A Sbjct: 126 GPTGVGKTYLIKNIARLIGVPFVKADATKFSETGYVGNDVDDLVRDLVKAA 176 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 71/257 (27%) Query: 229 DMDTVHRDSIQM------VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+D + RD ++ + YGI+FLDE DKI + S G VS GVQ +LL L+E + Sbjct: 164 DVDDLVRDLVKAAGGDVELAQYGIIFLDEIDKIASEGSPGGRDVSGRGVQINLLKLMEET 223 Query: 283 SVS----------------------TKYGSINTDHILFIASGAF---------HVSR--- 308 V+ + +I+T +ILFI SGAF +S+ Sbjct: 224 EVNLFSPTDMMSQMQAVMEMQRGGKPRPKTISTRNILFIVSGAFDKLGESIQKRMSQNEM 283 Query: 309 ------------PADLL--------------PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 P+ L PE GR P+RV +SLN D ILT +E Sbjct: 284 GFGANVRDDDEDPSKYLQHAETRDFIKYGFEPEFIGRVPIRVACESLNTDDLASILTSSE 343 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +++ QY++ GI + ++++I LA A + GAR L TV+ER+ + F Sbjct: 344 GSILNQYRDDFHGYGIDFNISKEAIRTLAAHASKERT-----GARGLMTVLERLFRNFKF 398 Query: 403 SASDLQEKTVVIDAEYV 419 K+ +D E + Sbjct: 399 ELPSTAIKSFDVDVETI 415 >gi|213962533|ref|ZP_03390795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sputigena Capno] gi|213954859|gb|EEB66179.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sputigena Capno] Length = 410 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 55/224 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 237 Query: 292 NTDHILFIASGAF------------------------HVSR--------PADL-----LP 314 NT+HILFIA GAF V R P DL +P Sbjct: 238 NTEHILFIAGGAFDGIERVISKRLNMQSVGYNSSKNTQVDRKNLVQYIIPKDLKDFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV ++ L+K R+ILT+ ++ +I QYK+L + +GI D TE+++D + + A Sbjct: 298 EIIGRLPVLTYMNPLDKHTLRMILTEPKNAIIKQYKKLFEMDGINFDITEEALDFIVEKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 + +GAR L+++ E +L D F + K + + EY Sbjct: 358 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKELKVTKEY 396 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ K+ +++A+ N ++R Q P AD E+ N+++VG TG GK Sbjct: 65 TPQEIKQFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNADDEVEIQKSNVIMVGETGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A++ P V+ T TE GYVG +VE I+ L+ A V ++ R Sbjct: 125 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILTRLLQAADYDVEKAER 177 >gi|254445308|ref|ZP_05058784.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235] gi|198259616|gb|EDY83924.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235] Length = 531 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 4/110 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRD-ELMPKNILLVG 60 FN PREI LDRY+I Q +AK+ +++A+ N RR DL D E +NI+L+G Sbjct: 62 FNLKPREIRDYLDRYVIQQNEAKKVISVAICDHFNHVRRCLERPDLGDLEYAKQNIILLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTGVGKT + R +A+L G PF+K + TKF+E GY+G +VE ++RDLV A Sbjct: 122 PTGVGKTYLMRNVAKLVGVPFVKADATKFSETGYIGGDVEDLVRDLVKGA 171 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 65/231 (28%) Query: 244 YGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVS----------------- 285 YGI+++DE DKI + +G+G VS GVQ +LL L+E + V+ Sbjct: 180 YGIIYIDEIDKIANKMNGSGGRDVSGRGVQINLLKLMEDTEVNLQSQTDMMGQMQAMMEM 239 Query: 286 ----TKYGSINTDHILFIASGAFH------------------VSRPAD------------ 311 K +I+T HILFI SGAF S+ +D Sbjct: 240 QRGKKKKRTISTKHILFIVSGAFDQMDKAIEKRLTNTSMGFGASQHSDSDEDENFLDQAE 299 Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 PE GR PVRV + L +D I+T +E +++ QY + GI L+ Sbjct: 300 TRDFIDYGFEPEFVGRLPVRVACQPLKPNDLFEIMTTSEGSVLRQYISDFEGYGITLEMD 359 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +DS++ +A+ A + GAR L T++ER F KT+ + Sbjct: 360 KDSLEEVAERAYKEKT-----GARGLMTILERAFRSFKFELPSTSIKTLQV 405 >gi|34540240|ref|NP_904719.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas gingivalis W83] gi|188995414|ref|YP_001929666.1| ATP-dependent protease ATP-binding subunit ClpX [Porphyromonas gingivalis ATCC 33277] gi|46576403|sp|Q7MX10|CLPX_PORGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689262|sp|B2RL24|CLPX_PORG3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|34396552|gb|AAQ65618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas gingivalis W83] gi|188595094|dbj|BAG34069.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Porphyromonas gingivalis ATCC 33277] Length = 411 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIPV 237 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T HILF+ +GAF H+ R P DL + Sbjct: 238 DTRHILFVCAGAFDGIEKKIAQRLNTRVVGYTAGLQNRHIDRENMLRYIRPQDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ HL+ L++ R I+T+ ++ + QY++L +GI + FT D +D + D Sbjct: 298 PEIIGRLPILTHLEPLDRDALRNIMTEPKNAITKQYEKLFAMDGIKVSFTSDMLDFVVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L++++E ++ D F+ ++KT+V+D Y H+ Sbjct: 358 AIEFK-----LGARGLRSIVETIMMDAMFTMPSGKKKTLVVDKAYAEAHL 402 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ DAKR +++A+ N ++R QQ +D E+ NI++VGPTG GK Sbjct: 66 PIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSD-GVEIEKSNIIMVGPTGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A++ PF V+ T TE GYVG ++E I+ L+ A V+++ R Sbjct: 125 TLLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADYDVKQAER 177 >gi|332882822|ref|ZP_08450433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679324|gb|EGJ52310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 412 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 55/224 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPKGGRKHPDQKYIEV 239 Query: 292 NTDHILFIASGAF------------------------HVSR--------PAD-----LLP 314 NT+HILFIA GAF H+ R P D L+P Sbjct: 240 NTEHILFIAGGAFDGIERVISKRLNMQAVGYNSSKNTHIDRKNLVQYIIPKDLKDFGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV ++ L++ R+ILT+ ++ +I QY++L + +GI + TE+++D + + A Sbjct: 300 EIIGRLPVLTYMNPLDRHTLRMILTEPKNAIIKQYQKLFEMDGIRFEITEEALDFIVEKA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 + +GAR L+++ E +L D F + K + + EY Sbjct: 360 LEYK-----LGARGLRSLCENILTDAMFELPNSGVKNLTVTKEY 398 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ K+ +++A+ N ++R Q P D E+ N+++VG TG GK Sbjct: 67 TPQEIKRFLDQYVIGQDFTKKILSVAVYNHYKRLQQPNVDDEVEIQKSNVIMVGETGTGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 127 TLVARTIAKMLNVPIAIVDATVLTEAGYVGEDVESILSRLLQAA 170 >gi|326334770|ref|ZP_08200976.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693083|gb|EGD35016.1| ATP-dependent Clp protease ATP-binding subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 415 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 108/224 (48%), Gaps = 55/224 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ LL L+EGS V+ KY + Sbjct: 180 GIVFIDEIDKISRKSDNPSITRDVSGEGVQHALLKLLEGSIVNVPPKGGRKHPDQKYIEV 239 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT+HILFIA GAF ++R A L+P Sbjct: 240 NTEHILFIAGGAFDGIERIIARRMNRQAVGYNSSKETKVDDKNLLQYITHKDLKDYGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV ++ L+K R+ILT ++ L+ QY +L +GI L F ED+++ + + A Sbjct: 300 EIIGRLPVLTYMDPLDKETLRMILTQPKNALVKQYIKLFAMDGITLSFEEDALNFIVEKA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 + +GAR L+++ E +L D F+ EKT+V+ Y Sbjct: 360 LEYK-----LGARGLRSLCESILTDAMFNLPSTNEKTLVVTRSY 398 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ+ K+ +++A+ N ++R D + E+ NI++VG TG GKT Sbjct: 68 PTEIKAFLDQYVIGQEATKKVLSVAVYNHYKRLLQEKDQEEVEIQKSNIVMVGQTGTGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A++ P V+ T FTE GYVG +VE I+ L+ A V ++ R Sbjct: 128 LMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILSRLLQAADYNVEKAER 179 >gi|311746205|ref|ZP_07719990.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus sp. PR1] gi|126576433|gb|EAZ80711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Algoriphagus sp. PR1] Length = 408 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ +L L+EG+ V+ K ++ Sbjct: 172 GIVYIDELDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTVVNVPPQGGRKHPDQKMIAV 231 Query: 292 NTDHILFIASGAF-----HV-----SRP-----------AD-----------------LL 313 NTD+ILFI GAF H+ ++P AD L+ Sbjct: 232 NTDNILFICGGAFDGIARHIGKRLNTQPMGFGKAKDNAVADRENLLQYVTSQDLKAFGLI 291 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR P+ HL L++ + ILT+ ++ L+ QY +L+K EG+ + F ED+ID + D Sbjct: 292 PELIGRLPILTHLDPLHRDSLKRILTEPKNALVKQYDKLLKMEGVDIVFEEDAIDFIVDK 351 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 AV N +GAR L+++ E ++ D + SD K +VIDA+Y + Sbjct: 352 AVEFN-----LGARGLRSICEAIITDAMYEIPSDDSIKELVIDAKYAQ 394 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67 P+E+ S LD+++IGQ++AK+ + +A+ N ++R D D + K NI++VG TG GKT Sbjct: 60 PKELTSFLDQFVIGQEEAKKVLTVAVYNHYKRLSQKTDKDDVKIEKSNIIMVGDTGTGKT 119 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF + T TE GYVG +VE I+ L+ A V + R Sbjct: 120 YLAKTLAKILEVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAER 171 >gi|86130753|ref|ZP_01049352.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia donghaensis MED134] gi|85818164|gb|EAQ39324.1| ATP-dependent Clp protease ATP-binding subunit [Dokdonia donghaensis MED134] Length = 410 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 107/225 (47%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313 NT+HILFIA GAF H+S+ P DL + Sbjct: 234 NTEHILFIAGGAFDGIERHISKRLNMQAMGFVASKSDEALEKDNMLKYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ R ILT+ ++ +I QYK+L + I T+D++D L D Sbjct: 294 PEIIGRLPVLTHMNPLDAGTLRAILTEPKNAIIKQYKKLFAMDDIEFSITDDALDYLVDK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F EK++ + Y Sbjct: 354 AIEYK-----LGARGLRSLCEAILTDAMFDLPSSDEKSLNVTKTY 393 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI S LD Y+IGQ+ KR +++A+ N ++R PA D E+ NI++VG TG GKT Sbjct: 62 PQEIKSFLDEYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 I++ +AR+ P V+ T TE GYVG +VE I+ L+ A + +++R Sbjct: 122 LIAKTVARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173 >gi|225158969|ref|ZP_03725281.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium TAV2] gi|224802464|gb|EEG20724.1| ATP-dependent protease Clp, ATPase subunit [Opitutaceae bacterium TAV2] Length = 537 Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 4/110 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQL--PADLRDELMPKNILLVG 60 F+ PREI LDR++I Q +AK+ +++A+ + + RQ L PA + +NIL++G Sbjct: 58 FSLKPREIRDHLDRFVIQQAEAKKVLSVAICDHYNHVRQCLETPALRERDYAKQNILVLG 117 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTGVGKT + R +ARL G PF+K + TKF+E GYVG +V+ I+RDLV A Sbjct: 118 PTGVGKTYLMRNIARLIGVPFVKADATKFSETGYVGGDVDDIVRDLVKAA 167 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 105/272 (38%), Gaps = 86/272 (31%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIG-----VSREGVQRDLLP 277 D+D + RD ++ + YGIV++DE DKI + G VS GVQ +LL Sbjct: 155 DVDDIVRDLVKAADGDVELAQYGIVYIDEIDKIASAGGPGAPGGGGRDVSGRGVQINLLK 214 Query: 278 LVEGSSVS----------------------TKYGSINTDHILFIASGAF----------- 304 L+E + V+ + +INT HILFI SGAF Sbjct: 215 LMEDTDVNLQSQTDIAAQMQAMMELQRGGKPRKRTINTRHILFIVSGAFDKLGESIRRRI 274 Query: 305 ----------------HVSRPAD---------------------LLPEIQGRFPVRVHLK 327 + PA + PE GR PVRV + Sbjct: 275 QSNRIGFAAAAPTTTSTDASPASATESASDYLRYAESRDFIDYGMEPEFVGRLPVRVACQ 334 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 +L D IL +E +++ QY+ I + T ++ +A +A N+ GAR Sbjct: 335 NLTADDLEKILNTSEGSILQQYRADFGGYSIDFEITPAAVAEVARLAHRENT-----GAR 389 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 L TV+ERVL D F KT ID V Sbjct: 390 GLMTVLERVLRDFKFELPSTAIKTFRIDPATV 421 >gi|75763961|ref|ZP_00743588.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488554|gb|EAO52143.1| ATP-dependent endopeptidase hsl ATP-binding subunit hslU [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 118 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 45/83 (54%), Positives = 68/83 (81%) Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 +++GPTGVGKT ++RR+A+L GAPFIKVE TKFTE+GYVGR+VE ++RDLV+ ++ IV+E Sbjct: 1 MMIGPTGVGKTEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKE 60 Query: 117 SRRDEVREQASINAEERILDALV 139 +V+++A A +R+++ LV Sbjct: 61 EMVVKVQDKAEEQANQRLVEILV 83 >gi|213583953|ref|ZP_03365779.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 136 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 85/136 (62%), Gaps = 2/136 (1%) Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 RKKLR+G++ DKEI+I +A + PG + L +F +G ++K ++ Sbjct: 1 RKKLREGQLDDKEIEINLAAAPMGVEIMAPPGMEEM-TSQLQSIFQN-LGGQKQKPRKLK 58 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGV 271 ++ L+ +E+ +L++ + + +D+I VE +GIVF+DE DKI R +G VSREGV Sbjct: 59 IKDAMKLLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREGV 118 Query: 272 QRDLLPLVEGSSVSTK 287 QRDLLPLVEG +VSTK Sbjct: 119 QRDLLPLVEGCTVSTK 134 >gi|318043032|ref|ZP_07974988.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. CB0101] Length = 450 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 118/427 (27%), Positives = 180/427 (42%), Gaps = 97/427 (22%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 PREI + LD ++GQ++AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 83 PREIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATRLHKSNILLIGP 142 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 143 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQR-- 200 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS-NFD 180 G I EID ++A S + S D Sbjct: 201 ------------------------------------GIIYIDEID-KIARKSENPSITRD 223 Query: 181 IPG-GASVGILNLSE-LFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 + G G +L L E + V G +K Q C I +DT Sbjct: 224 VSGEGVQQALLKLLEGTVANVPPQGGRKH---PYQDC------------IQIDTS----- 263 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILF 298 Q++ G F+ D + R N IG EG G S S + H+L Sbjct: 264 QILFICGGAFVGLEDVVQRRMGRNSIGFIPEG----------GRSRSRQNKDQQAAHVL- 312 Query: 299 IASGAFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 H+ P DL+ PE GR PV L+ L+ ILT+ L+ Q++ L+ Sbjct: 313 -----RHLE-PDDLVKYGLIPEFIGRLPVSAVLEPLDSRALEAILTEPRDALVKQFQTLL 366 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTV 412 + + LDF +++A+A A + GAR L+ ++E ++ D+ + SD K Sbjct: 367 SMDEVRLDFEPGAVEAIAAEAHRRKT-----GARALRGIVEELMLDLMYDLPSDKSTKAF 421 Query: 413 VIDAEYV 419 + E V Sbjct: 422 TVTRELV 428 >gi|258648498|ref|ZP_05735967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella tannerae ATCC 51259] gi|260851263|gb|EEX71132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella tannerae ATCC 51259] Length = 415 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ +L L+EGS V+ Y + Sbjct: 183 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGSVVNVPPKGGRKHPDQDYVHV 242 Query: 292 NTDHILFIASGAF-------------------HVSR-----PADLL-------------- 313 +T +ILFI GAF +V R PA+L+ Sbjct: 243 DTRNILFICGGAFDGIEKKIAQRLNTHTVGYDNVQRVKKIDPANLMQYIEPMDLKSFGLI 302 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R IL + +++L+ QY++L K +G+ L F ED++D + + Sbjct: 303 PEIIGRLPVLTYLNPLDEAALRRILVEPKNSLVRQYEKLFKMDGVTLTFAEDALDFIVNK 362 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L+++ME ++ D F +E T + A Y + H Sbjct: 363 AMEYK-----LGARGLRSIMESIMMDAMFDIPSAKEDTFKVTAAYAKEHF 407 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 5/115 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD---ELMPKNILLVGPTGV 64 P+EI S LD+Y+IGQ+DAKR +++++ N ++R Q D D E+ NI++VG TG Sbjct: 68 PQEIKSYLDQYVIGQEDAKRYLSVSVYNHYKRLAQENLDAVDDGVEIEKSNIIMVGTTGT 127 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT ++R +ARL PF V+ T FTE GYVG +VE I+ L+ A N+ R R Sbjct: 128 GKTLLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQEADFNVERAER 182 >gi|120434593|ref|YP_860284.1| ATP-dependent protease ATP-binding subunit ClpX [Gramella forsetii KT0803] gi|117576743|emb|CAL65212.1| ATP-dependent Clp protease ATP-binding subunit [Gramella forsetii KT0803] Length = 410 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+SV+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTSVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT++ILFIA GAF +S+ P DL + Sbjct: 234 NTENILFIAGGAFDGIERIISKRLNMQAVGFSASKSEDSIERTNLLKYIIPKDLKEFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P H+ L+K R ILT+ ++ +I QYK+L + + I D T+D++D + + Sbjct: 294 PEIIGRLPALTHMNPLDKETLRAILTEPKNAIIKQYKKLFEMDDIKFDITDDALDYIVNK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV +GAR L+++ E +L D F + E + + EY Sbjct: 354 AVEYK-----LGARGLRSLCEAILTDAMFELPESNEDSFTVTREYA 394 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+ I S LD YIIGQ+ K+ +++A+ N ++R P + D E+ NI++VG TG GKT Sbjct: 62 PKTIKSFLDEYIIGQEQTKKVMSVAVYNHYKRLLQPENEDDVEIQKSNIVMVGETGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LMARTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAA 164 >gi|115379797|ref|ZP_01466867.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|310820758|ref|YP_003953116.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella aurantiaca DW4/3-1] gi|115363189|gb|EAU62354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|309393830|gb|ADO71289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 356 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65 +PR+I LDRY+IGQ +AKR VAIA N +R Q R L+ K NILL+GPTG G Sbjct: 12 LTPRQIFERLDRYVIGQDEAKRTVAIAAHNHLKRIQARRLRRGSLIKKSNILLIGPTGSG 71 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT I+R LA + PF V+ T++TE GY G++VE +I DL+ A + V +++R Sbjct: 72 KTHIARNLADILSVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 125 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 52/226 (23%) Query: 245 GIVFLDEFDKIVARDSG--NGIG---VSREGVQRDLLPLVEGSSV-----------STKY 288 GI+F+DE DKI R G NG G + EGVQ+ LL ++EG V + + Sbjct: 126 GIIFVDEVDKIARRSQGARNGAGSRDIGGEGVQQGLLKMLEGREVFVPMNLTQAWNKSDF 185 Query: 289 GSINTDHILFIASGAFH--------VSRPAD-----------------------LLPEIQ 317 I+T ILFI +G F SRP +L E Sbjct: 186 VQIDTRDILFICAGTFSDLHEYGEGGSRPLGFGSEEASRRITRRISVKQLVDFGMLAEFL 245 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR PV V L++L + + +LT+ ++I +++EL+ + I LDFTE+++ + +V Sbjct: 246 GRLPVMVQLQALGEPELLRVLTEPPDSIIREFRELLAYDEIDLDFTEEALREVVHYSVEK 305 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 +GAR L++++E V+ D+ F A + + +D ++VR + Sbjct: 306 G-----LGARGLRSILEHVMADVMFEAPERGRGSFRVDGDFVRTRL 346 >gi|319943617|ref|ZP_08017898.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis ATCC 51599] gi|319742850|gb|EFV95256.1| ATP-dependent Clp protease ATP-binding subunit [Lautropia mirabilis ATCC 51599] Length = 421 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/100 (51%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQQ AKR +A+A+ N ++R + D D EL NILLVGPTG GKT Sbjct: 66 PSEIAAILDQYVIGQQKAKRTLAVAVYNHYKRLRHKGDKDDVELTKSNILLVGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 LLAQTLARLLNVPFVMADATTLTEAGYVGEDVESIIQKLL 165 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + + Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFVQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V +D L Sbjct: 238 DTTNILFICGGAFDGMDKVIRDRSERSGIGFGAQVKGASDRSLSELFQDIEPDDLIKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L+++ ILT+ ++ L+ QY++L EG+ LD ++ A+A Sbjct: 298 IPELVGRLPVLATLDELDEATLVRILTEPKNALVKQYQKLFSMEGVELDIRPAALKAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L DI + L+ + VVID Sbjct: 358 QALKRKA-----GARGLRSILEHALIDIMYELPGLKNVEKVVID 396 >gi|315607429|ref|ZP_07882425.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae ATCC 33574] gi|315250861|gb|EFU30854.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella buccae ATCC 33574] Length = 413 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67 PREI LD YIIGQ DAKR +A+A+ N ++R Q PA D E+ NI++VG TG GKT Sbjct: 66 PREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA V ++R Sbjct: 126 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 177 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ +L L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTMVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF HV + P DL + Sbjct: 238 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRKIDKEDIMQYIQPQDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L + R ILT+ ++++I QY +L + +G+ L F E ++D + D Sbjct: 298 PELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGALDYIVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ D F + K I A+Y + Sbjct: 358 AVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAK 399 >gi|288924567|ref|ZP_06418504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella buccae D17] gi|288338354|gb|EFC76703.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella buccae D17] Length = 414 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67 PREI LD YIIGQ DAKR +A+A+ N ++R Q PA D E+ NI++VG TG GKT Sbjct: 67 PREIKQYLDEYIIGQDDAKRHLAVAVYNHYKRLQQPASDEGVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA V ++R Sbjct: 127 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 178 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ +L L+EG+ V+ Y + Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTMVNVPPKGGRKHPDQDYIHV 238 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF HV + P DL + Sbjct: 239 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRKIDKEDIMQYIQPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L + R ILT+ ++++I QY +L + +G+ L F E ++D + D Sbjct: 299 PELVGRLPVLTYLNPLGREALRRILTEPKNSIIRQYIKLFEMDGVTLTFAEGALDYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ D F + K I A+Y + Sbjct: 359 AVEYK-----LGARGLRSIVETVVMDAMFDIPSKRIKKFEITADYAK 400 >gi|224824982|ref|ZP_03698088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella nitroferrum 2002] gi|224602653|gb|EEG08830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lutiella nitroferrum 2002] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 75/113 (66%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI S+LD+YIIGQ AK+ +++A+ N ++R P D D EL NILL+GPTG GK Sbjct: 68 TPQEIRSDLDQYIIGQDIAKKTLSVAVYNHYKRLYTPTDKDDVELAKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLLQKCDYDVEKAQR 180 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 59/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFIQV 240 Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313 +T +ILFI GAF VS P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKIIRRRSEKGGIGFGAEVSSKDESKSISVLFKDVEPGDLIKFG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT ++ L+ QY+ L EG+ L+ ++ +A Sbjct: 301 LIPELIGRLPVVATLEELDEEALVTILTQPKNALVKQYQRLFSLEGVELEIRPSALRVIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427 A+ V GAR L++++ER L D + + + V+ E V + GD P Sbjct: 361 KQAL-----VRKTGARGLRSILERALLDTMYELPSMDNVSRVVVDEKV-IEKGDKP 410 >gi|23501986|ref|NP_698113.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis 1330] gi|163843377|ref|YP_001627781.1| ATP-dependent protease ATP-binding subunit [Brucella suis ATCC 23445] gi|38257637|sp|Q8G0I5|CLPX_BRUSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189082486|sp|B0CGR0|CLPX_BRUSI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|23347936|gb|AAN30028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis 1330] gi|163674100|gb|ABY38211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella suis ATCC 23445] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|161619060|ref|YP_001592947.1| ATP-dependent protease ATP-binding subunit [Brucella canis ATCC 23365] gi|189082485|sp|A9M5C1|CLPX_BRUC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161335871|gb|ABX62176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella canis ATCC 23365] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFASLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 V + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|260566356|ref|ZP_05836826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 4 str. 40] gi|260155874|gb|EEW90954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 4 str. 40] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 V + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KVVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|254701853|ref|ZP_05163681.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv. 5 str. 513] gi|261752414|ref|ZP_05996123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 5 str. 513] gi|261742167|gb|EEY30093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 5 str. 513] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 AV + GAR L+++ME++L D F L+ Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLE 390 >gi|225627582|ref|ZP_03785619.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti str. Cudo] gi|254706706|ref|ZP_05168534.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis M163/99/10] gi|254710186|ref|ZP_05171997.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis B2/94] gi|254714184|ref|ZP_05175995.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M644/93/1] gi|254717619|ref|ZP_05179430.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M13/05/1] gi|256031680|ref|ZP_05445294.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella pinnipedialis M292/94/1] gi|256159836|ref|ZP_05457569.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti M490/95/1] gi|256255082|ref|ZP_05460618.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ceti B1/94] gi|260168814|ref|ZP_05755625.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp. F5/99] gi|261219455|ref|ZP_05933736.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M13/05/1] gi|261222275|ref|ZP_05936556.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti B1/94] gi|261314168|ref|ZP_05953365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M163/99/10] gi|261317743|ref|ZP_05956940.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis B2/94] gi|261321951|ref|ZP_05961148.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M644/93/1] gi|261758299|ref|ZP_06002008.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. F5/99] gi|265988774|ref|ZP_06101331.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M292/94/1] gi|265998239|ref|ZP_06110796.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M490/95/1] gi|225617587|gb|EEH14632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ceti str. Cudo] gi|260920859|gb|EEX87512.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti B1/94] gi|260924544|gb|EEX91112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M13/05/1] gi|261294641|gb|EEX98137.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M644/93/1] gi|261296966|gb|EEY00463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis B2/94] gi|261303194|gb|EEY06691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M163/99/10] gi|261738283|gb|EEY26279.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. F5/99] gi|262552707|gb|EEZ08697.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella ceti M490/95/1] gi|264660971|gb|EEZ31232.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella pinnipedialis M292/94/1] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F + ++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDYALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|256113665|ref|ZP_05454476.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 3 str. Ether] gi|265995025|ref|ZP_06107582.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 3 str. Ether] gi|262766138|gb|EEZ11927.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 3 str. Ether] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIAMLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|17987158|ref|NP_539792.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 1 str. 16M] gi|62290023|ref|YP_221816.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 1 str. 9-941] gi|82699950|ref|YP_414524.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis biovar Abortus 2308] gi|225852609|ref|YP_002732842.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis ATCC 23457] gi|237815532|ref|ZP_04594529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus str. 2308 A] gi|254689335|ref|ZP_05152589.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 6 str. 870] gi|254693819|ref|ZP_05155647.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 3 str. Tulya] gi|254697468|ref|ZP_05159296.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 2 str. 86/8/59] gi|254730365|ref|ZP_05188943.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 4 str. 292] gi|256044766|ref|ZP_05447670.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis bv. 1 str. Rev.1] gi|256061192|ref|ZP_05451344.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella neotomae 5K33] gi|256257581|ref|ZP_05463117.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus bv. 9 str. C68] gi|256263898|ref|ZP_05466430.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 2 str. 63/9] gi|260565632|ref|ZP_05836116.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. 16M] gi|260754851|ref|ZP_05867199.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 6 str. 870] gi|260758068|ref|ZP_05870416.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 4 str. 292] gi|260761892|ref|ZP_05874235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 2 str. 86/8/59] gi|260883863|ref|ZP_05895477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 9 str. C68] gi|261214102|ref|ZP_05928383.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 3 str. Tulya] gi|261325199|ref|ZP_05964396.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella neotomae 5K33] gi|265991189|ref|ZP_06103746.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. Rev.1] gi|297248423|ref|ZP_06932141.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 5 str. B3196] gi|21263465|sp|Q8YHC7|CLPX_BRUME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|68067919|sp|Q9L7X5|CLPX_BRUAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123727373|sp|Q2YPX2|CLPX_BRUA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763837|sp|C0RJ80|CLPX_BRUMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|17982824|gb|AAL52056.1| ATP-dependent clp protease ATP-binding subunit clpx [Brucella melitensis bv. 1 str. 16M] gi|62196155|gb|AAX74455.1| ClpX, ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 1 str. 9-941] gi|82616051|emb|CAJ11087.1| CbxX/CfqX superfamily:ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATP [Brucella melitensis biovar Abortus 2308] gi|225640974|gb|ACO00888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella melitensis ATCC 23457] gi|237788830|gb|EEP63041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus str. 2308 A] gi|260151700|gb|EEW86794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. 16M] gi|260668386|gb|EEX55326.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 4 str. 292] gi|260672324|gb|EEX59145.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 2 str. 86/8/59] gi|260674959|gb|EEX61780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 6 str. 870] gi|260873391|gb|EEX80460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 9 str. C68] gi|260915709|gb|EEX82570.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella abortus bv. 3 str. Tulya] gi|261301179|gb|EEY04676.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella neotomae 5K33] gi|263001973|gb|EEZ14548.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 1 str. Rev.1] gi|263094030|gb|EEZ17964.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella melitensis bv. 2 str. 63/9] gi|297175592|gb|EFH34939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella abortus bv. 5 str. B3196] gi|326409128|gb|ADZ66193.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella melitensis M28] gi|326538836|gb|ADZ87051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella melitensis M5-90] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|148560290|ref|YP_001259030.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella ovis ATCC 25840] gi|166214760|sp|A5VQN3|CLPX_BRUO2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148371547|gb|ABQ61526.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella ovis ATCC 25840] Length = 427 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|294852447|ref|ZP_06793120.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026] gi|294821036|gb|EFG38035.1| ATP-dependent Clp protease [Brucella sp. NVSL 07-0026] Length = 424 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------L 312 +T +ILFI GAF + D L Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEGLLKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|298346556|ref|YP_003719243.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii ATCC 43063] gi|298236617|gb|ADI67749.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii ATCC 43063] Length = 420 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI L Y+IGQ++AKRA+++A+ N ++R Q+ D EL NILL+GPTG Sbjct: 63 TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+++ R Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF V DL +P Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ +L+ D +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L T+ME L I F S D+ E V+I+AE V Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398 >gi|228472218|ref|ZP_04056984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga gingivalis ATCC 33624] gi|228276421|gb|EEK15145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga gingivalis ATCC 33624] Length = 415 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 55/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ LL L+EGS V+ KY + Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQHALLKLLEGSIVNVPPKGGRKHPDQKYIEV 239 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT+HILFIA GAF ++R A L+P Sbjct: 240 NTEHILFIAGGAFDGIEQIIAKRMNRQAVGYNTSKETRVDDKNLLQYVTHKDLKDFGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV ++ L++S R+ILT+ ++ +I QY +L + I L F E++++ + + A Sbjct: 300 EIIGRLPVLTYMNPLDESTLRMILTEPKNAIIKQYIKLFGMDDIALSFEEEALNFIVEKA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + +GAR L+++ E +L D F +EK++V+ Y + Sbjct: 360 LEYK-----LGARGLRSLCESILTDAMFQLPGTEEKSLVVTRAYAQ 400 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD+Y+IGQ+ K+ +++A+ N ++R D + E+ NI++VG TG GKT Sbjct: 68 PTEIKSFLDQYVIGQEATKKVLSVAVYNHYKRLLQERDEHEVEIQKSNIVMVGQTGTGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A++ P V+ T FTE GYVG +VE I+ L+ A Sbjct: 128 LMARTIAQMLNVPLAIVDATVFTEAGYVGEDVESILTRLLQAA 170 >gi|304389726|ref|ZP_07371685.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326902|gb|EFL94141.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 420 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI L Y+IGQ++AKRA+++A+ N ++R Q+ D EL NILL+GPTG Sbjct: 63 TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+++ R Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF V DL +P Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ +L+ D +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 N + GAR L T+ME L I F S D+ E V+I+AE V Sbjct: 358 ENRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398 >gi|317164409|gb|ADV07950.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae TCDC-NG08107] Length = 442 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 94 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 206 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 265 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 266 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 325 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 326 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 385 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 386 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 425 >gi|194098830|ref|YP_002001893.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae NCCP11945] gi|193934120|gb|ACF29944.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae NCCP11945] Length = 442 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 94 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 153 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 206 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 265 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 266 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 325 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 326 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 385 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 386 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 425 >gi|240080536|ref|ZP_04725079.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae FA19] gi|240123698|ref|ZP_04736654.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID332] gi|240128399|ref|ZP_04741060.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae SK-93-1035] gi|268596668|ref|ZP_06130835.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA19] gi|268682330|ref|ZP_06149192.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID332] gi|268686798|ref|ZP_06153660.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-93-1035] gi|268550456|gb|EEZ45475.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA19] gi|268622614|gb|EEZ55014.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID332] gi|268627082|gb|EEZ59482.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-93-1035] Length = 414 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|240013975|ref|ZP_04720888.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae DGI18] gi|240016417|ref|ZP_04722957.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae FA6140] gi|240121542|ref|ZP_04734504.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID24-1] Length = 414 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|315655112|ref|ZP_07908014.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii ATCC 51333] gi|315490593|gb|EFU80216.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus curtisii ATCC 51333] Length = 420 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI L Y+IGQ++AKRA+++A+ N ++R Q+ D EL NILL+GPTG Sbjct: 63 TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+++ R Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF V DL +P Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ +L+ D +LT+ ++ ++ QY+ L + +G+ L FTE +I A+A++A Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTESAIHAVAELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L T+ME L I F S D+ E V+I+AE V Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSREDVAE--VIIEAECV 398 >gi|240118149|ref|ZP_04732211.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID1] gi|268603866|ref|ZP_06138033.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID1] gi|268587997|gb|EEZ52673.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID1] Length = 414 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFCIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|240115851|ref|ZP_04729913.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae PID18] gi|254493894|ref|ZP_05107065.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 1291] gi|260440333|ref|ZP_05794149.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae DGI2] gi|268601527|ref|ZP_06135694.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID18] gi|291043626|ref|ZP_06569342.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae DGI2] gi|226512934|gb|EEH62279.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 1291] gi|268585658|gb|EEZ50334.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae PID18] gi|291012089|gb|EFE04078.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae DGI2] Length = 414 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|315657030|ref|ZP_07909915.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492422|gb|EFU82028.1| ATP-dependent protease ATP-binding subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 420 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI L Y+IGQ++AKRA+++A+ N ++R Q+ D EL NILL+GPTG Sbjct: 63 TPHEIFDFLQEYVIGQENAKRALSVAVYNHYKRVRAQRHGEDTGMELTKSNILLLGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+++ R Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIEI 237 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF V DL +P Sbjct: 238 DTSSILFIAAGAFAGLDEIVKARLGQRSTGFGSDLKSVKEHGDLFAKVTPDDLHKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ +L+ D +LT+ ++ ++ QY+ L + +G+ L FT+ +I A+A++A Sbjct: 298 EFIGRLPVITNVSALDVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDAAIHAVAELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L T+ME L I F S D+ E V+I+AE V Sbjct: 358 EKRGT-----GARSLSTLMENTLSQIMFDLPSRDDVAE--VIIEAECV 398 >gi|240125888|ref|ZP_04738774.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae SK-92-679] gi|268684487|ref|ZP_06151349.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-92-679] gi|268624771|gb|EEZ57171.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae SK-92-679] Length = 414 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|239999117|ref|ZP_04719041.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae 35/02] gi|240113095|ref|ZP_04727585.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria gonorrhoeae MS11] gi|268594953|ref|ZP_06129120.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 35/02] gi|268599181|ref|ZP_06133348.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae MS11] gi|268548342|gb|EEZ43760.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae 35/02] gi|268583312|gb|EEZ47988.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae MS11] Length = 414 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|59801072|ref|YP_207784.1| ATP-dependent protease ATP-binding subunit [Neisseria gonorrhoeae FA 1090] gi|293398934|ref|ZP_06643099.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria gonorrhoeae F62] gi|75356149|sp|Q5F8W5|CLPX_NEIG1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|59717967|gb|AAW89372.1| putative ATP-dependent Clp protease ATP-binding subunit [Neisseria gonorrhoeae FA 1090] gi|291610348|gb|EFF39458.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria gonorrhoeae F62] Length = 414 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ LD Y+IGQ AK+A+A+A+ N ++R + P AD EL NILL+GPTG GK Sbjct: 66 TPAEIVANLDDYVIGQGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIN 237 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPADLL-- 313 ++T +ILFI GAF + P DL+ Sbjct: 238 VDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++ Sbjct: 298 GLIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 358 ARQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|49475381|ref|YP_033422.1| ATP-dependent protease ATP-binding subunit [Bartonella henselae str. Houston-1] gi|61211490|sp|Q6G3Z2|CLPX_BARHE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49238187|emb|CAF27397.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella henselae str. Houston-1] Length = 424 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ + IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 300 IPEFIGRLPIVATLEDLDVNALVQILSKPKNALVKQYQRLFEMENVELAFHEDALRVIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L + F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402 >gi|302878842|ref|YP_003847406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella capsiferriformans ES-2] gi|302581631|gb|ADL55642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gallionella capsiferriformans ES-2] Length = 416 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 72/111 (64%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P++I + LD Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GKT Sbjct: 66 PKDICATLDEYVIGQERAKRILSVAVYNHYKRLKCNTDDGVELAKSNILLVGPTGSGKTL 125 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 LAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYNVEKAQR 176 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S T++ + Sbjct: 177 GIIYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTKASIPPQGGRKHPNTEFLQV 236 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 237 DTTNILFICGGAFDGLEKVIRNRSSKASIGFGATIRSVDERKTGETLRDVEPEDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ + ILT+ ++ L QYK+L + EG+ L+F ED++ A+A Sbjct: 297 IPEFVGRLPVIATLEELDEAAMKQILTEPKNALTKQYKKLFEMEGVELEFREDALLAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D+ F Sbjct: 357 KALARKT-----GARGLRSILEQALLDVMF 381 >gi|227821607|ref|YP_002825577.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium fredii NGR234] gi|254763858|sp|C3MA45|CLPX_RHISN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|227340606|gb|ACP24824.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sinorhizobium fredii NGR234] Length = 425 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQQ AKR +++A+ N ++R A D EL NI+LVGPTG GK Sbjct: 68 TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRSPEDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAK 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+++ME++L D F L+ + VVI E V+ Sbjct: 361 RAI-----IRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404 >gi|189024263|ref|YP_001935031.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella abortus S19] gi|260546575|ref|ZP_05822314.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC 8038] gi|238689370|sp|B2S5W0|CLPX_BRUA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189019835|gb|ACD72557.1| ATP-dependent protease ATP-binding subunit [Brucella abortus S19] gi|260095625|gb|EEW79502.1| ATP-dependent protease ATP-binding subunit [Brucella abortus NCTC 8038] Length = 424 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T T+ GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTQAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|240850275|ref|YP_002971668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella grahamii as4aup] gi|240267398|gb|ACS50986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella grahamii as4aup] Length = 424 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ + IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 300 IPEFIGRLPIVATLEDLDVNALMQILSQPKNALVKQYQRLFEMENVELSFHEDALRVIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L + F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402 >gi|163868072|ref|YP_001609276.1| ATP-dependent protease ATP-binding subunit ClpX [Bartonella tribocorum CIP 105476] gi|189082484|sp|A9ISA8|CLPX_BART1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161017723|emb|CAK01281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella tribocorum CIP 105476] Length = 424 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIIAVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ + IL+ ++ L+ QY+ L + E + L F ED++ A+A Sbjct: 300 IPEFIGRLPIVATLEDLDVNALMQILSQPKNALVKQYQRLFEMENVELAFHEDALRAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L + F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPALEGVQKVVISSDVV 402 >gi|153009535|ref|YP_001370750.1| ATP-dependent protease ATP-binding subunit ClpX [Ochrobactrum anthropi ATCC 49188] gi|166214795|sp|A6X117|CLPX_OCHA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151561423|gb|ABS14921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum anthropi ATCC 49188] Length = 424 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R Q +D+ EL NILLVGPTG Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKSSDI--ELAKSNILLVGPTGC 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 GKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 240 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRSVDERRIGDVFRELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMESVELSFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVV 402 >gi|15965009|ref|NP_385362.1| ATP-dependent protease ATP-binding subunit [Sinorhizobium meliloti 1021] gi|307301081|ref|ZP_07580850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti BL225C] gi|307317815|ref|ZP_07597253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti AK83] gi|21263475|sp|Q92QQ2|CLPX_RHIME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15074188|emb|CAC45835.1| Probable ATP-dependent CLP protease ATP-binding subunit [Sinorhizobium meliloti 1021] gi|306896577|gb|EFN27325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti AK83] gi|306904036|gb|EFN34622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium meliloti BL225C] Length = 425 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQQ AKR +++A+ N ++R A D EL NI+LVGPTG GK Sbjct: 68 TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L+F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E V+ Sbjct: 361 RAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVK 404 >gi|149194750|ref|ZP_01871845.1| ATP-dependent protease ATP-binding subunit [Caminibacter mediatlanticus TB-2] gi|149135173|gb|EDM23654.1| ATP-dependent protease ATP-binding subunit [Caminibacter mediatlanticus TB-2] Length = 404 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 55/228 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 170 GIVFIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKHPHQEFIQI 229 Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314 +T +ILFI GAF + P DL +P Sbjct: 230 DTTNILFICGGAFEGLEEIIQRRLEGATVGFLGKTKEKLSKDDIFSLVEPEDLVKYGLIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR PV LK L+K D +L + + LI QYK L +G+ L+F +D+++A+A+ A Sbjct: 290 EIVGRLPVIATLKELDKEDLIRVLVEPKDALIKQYKALFAIDGVELEFEKDALEAIAEKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 + + GAR L+ ++E ++ DI F+ D + VVI + V H Sbjct: 350 IKRGT-----GARGLRAILEEIMVDIMFNLPDYKGYKVVITKDVVENH 392 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 73/114 (64%), Gaps = 2/114 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI + LD Y+IGQ+ AK+ +++A+ N ++R L D +D E+ NIL++GPTG G Sbjct: 57 LTPKEIKAHLDEYVIGQERAKKIISVAVYNHYKRI-LYGDTQDVEIQKSNILMIGPTGSG 115 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT I+R LA+L P + T TE GYVG +VE ++ L+ A ++++ R Sbjct: 116 KTLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAADGDIKKAER 169 >gi|150396096|ref|YP_001326563.1| ATP-dependent protease ATP-binding subunit ClpX [Sinorhizobium medicae WSM419] gi|166215207|sp|A6U7U8|CLPX_SINMW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150027611|gb|ABR59728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sinorhizobium medicae WSM419] Length = 425 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQQ AKR +++A+ N ++R A D EL NI+LVGPTG GK Sbjct: 68 TPQEIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L+F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E V+ Sbjct: 361 RAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVK 404 >gi|49474140|ref|YP_032182.1| ATP-dependent protease ATP-binding subunit [Bartonella quintana str. Toulouse] gi|61211489|sp|Q6G177|CLPX_BARQU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49239644|emb|CAF26004.1| ATP-dependent clp protease ATP-binding subunit clpX [Bartonella quintana str. Toulouse] Length = 424 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIITVLDDYVIGQQHAKRVLSVAVHNHYKRLAHQSKSNDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 NT +ILFI GAF V P + L Sbjct: 240 NTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERCVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ + IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 300 IPEFIGRLPIVATLEDLDVNALVQILSQPKNALVKQYQRLFEMENVELAFHEDALRVIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L + F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLETMFELPTLEGVQKVVISSDVV 402 >gi|154253669|ref|YP_001414493.1| ATP-dependent protease ATP-binding subunit ClpX [Parvibaculum lavamentivorans DS-1] gi|171769684|sp|A7HY53|CLPX_PARL1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154157619|gb|ABS64836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parvibaculum lavamentivorans DS-1] Length = 421 Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+EI LD Y+IGQQ AKR +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 65 SPQEICGVLDDYVIGQQHAKRVLSVAVHNHYKRLNHAAKNNDVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFHVSR----------------------------------PADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIIGQRGKGAGIGFGAKVQSVEDRRTGDILKDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E + L F+E+++ A++ Sbjct: 298 IPEFVGRMPVLATLEDLDEEALLTILTQPKNALVKQYERLFEMENVRLTFSEEALRAVSR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F L+ + VVI AE V Sbjct: 358 KAIERKT-----GARGLRSILESILLDTMFELPTLEGVEEVVISAEVV 400 >gi|239831861|ref|ZP_04680190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum intermedium LMG 3301] gi|239824128|gb|EEQ95696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ochrobactrum intermedium LMG 3301] Length = 424 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 240 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKSVDERRIGDVFRELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELSFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVQEVVISGDVV 402 >gi|256369535|ref|YP_003107045.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|306841835|ref|ZP_07474517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO2] gi|306843973|ref|ZP_07476568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO1] gi|255999697|gb|ACU48096.1| ATP-dependent protease ATP-binding subunit [Brucella microti CCM 4915] gi|306275728|gb|EFM57452.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO1] gi|306288062|gb|EFM59459.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. BO2] Length = 424 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|254719173|ref|ZP_05180984.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella sp. 83/13] gi|265984169|ref|ZP_06096904.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. 83/13] gi|306838165|ref|ZP_07471021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. NF 2653] gi|264662761|gb|EEZ33022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella sp. 83/13] gi|306406755|gb|EFM62978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brucella sp. NF 2653] Length = 424 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV V GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAV-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|225010438|ref|ZP_03700909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-3C] gi|225005267|gb|EEG43218.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-3C] Length = 410 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313 NT++ILFIA GAF +S+ P DL + Sbjct: 234 NTENILFIAGGAFDGIEKKISKRLNLQALGYSASKADEGLDNENILQYITPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+K R ILT ++ +I QY++L + + I L+ E+++D L + Sbjct: 294 PEIIGRLPVLTHMNPLDKKTLRAILTQPKNAIIKQYEKLFEMDHIALEINEEALDFLVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ +GAR L+++ E V D FS +EK +D Y Sbjct: 354 ALEYK-----LGARGLRSLCESVFTDAMFSLPSSEEKEFKVDRAYA 394 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD++IIGQ K+ +++A+ N ++R L + +D E+ NI++VG TG GK Sbjct: 62 PIEIKDFLDQFIIGQDRTKKVLSVAVYNHYKRL-LQQNTKDDVEIQKSNIIMVGQTGTGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 121 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|254704396|ref|ZP_05166224.1| ATP-dependent protease ATP-binding subunit ClpX [Brucella suis bv. 3 str. 686] gi|261755074|ref|ZP_05998783.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 3 str. 686] gi|261744827|gb|EEY32753.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brucella suis bv. 3 str. 686] Length = 424 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+DAK +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEIMAVLDDYVIGQKDAKSVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PFI + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 KAVEHKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 402 >gi|225387260|ref|ZP_03757024.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme DSM 15981] gi|225046637|gb|EEG56883.1| hypothetical protein CLOSTASPAR_01012 [Clostridium asparagiforme DSM 15981] Length = 477 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 106/423 (25%), Positives = 185/423 (43%), Gaps = 91/423 (21%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP----------KNIL 57 +P +I + LD Y++GQ+ AK+ V++A+ N ++R L +E + NIL Sbjct: 123 APHQIKARLDEYVVGQEKAKKVVSVAVYNHYKRAFLGGKPEEETVSGPDEEVTIEKSNIL 182 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 ++GPTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V + Sbjct: 183 MIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVARA 242 Query: 118 RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 E+ I +E +D + K T NTR+V GE +E+ +++ + S+ Sbjct: 243 ------EKGIIFIDE--IDKIAKKKQT-NTRDV------SGESVQQEL-LKLLEGST--- 283 Query: 178 NFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 ++P G+ N + M + I +P+L +RL ++ Sbjct: 284 -VEVPVGS-----NQKNAMTP-MATVNTDNILFICGGAFPDLEEIIKERLTKKSSM---- 332 Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL 297 +G V D FDK +LL V + T +G I Sbjct: 333 -----GFGAVLRDTFDK-----------------DPNLLSYVTNEDLRT-FGMI------ 363 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 PE GR P+ V L+ L++ IL + ++ + QY++L+ + Sbjct: 364 ----------------PEFLGRLPMTVTLQGLDRDMMVRILREPKNAITKQYEKLLAMDE 407 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDA 416 + L F +D++D +A A+ + GAR L+ ++E + DI + D +VV+ Sbjct: 408 VRLVFEDDALDWIAGEAIKRGT-----GARALRAILEEFMLDIMYEIPKDSNIGSVVVTR 462 Query: 417 EYV 419 Y+ Sbjct: 463 PYL 465 >gi|119384011|ref|YP_915067.1| ATP-dependent protease ATP-binding subunit [Paracoccus denitrificans PD1222] gi|166214797|sp|A1B1H7|CLPX_PARDP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119373778|gb|ABL69371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paracoccus denitrificans PD1222] Length = 421 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI + LD Y+IGQ+ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPREICNVLDDYVIGQEHAKRVLSVAVHNHYKRLNHSSKTDIELAKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 93/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFICGGAFAGLDRIIAQRNKGTAMGFGAAVKEDDDKGVGELFKQLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L E + L FTED++ A+A Sbjct: 297 IPEFVGRLPVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME +L D F Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMF 381 >gi|294672821|ref|YP_003573437.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prevotella ruminicola 23] gi|294472231|gb|ADE81620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella ruminicola 23] Length = 412 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/112 (46%), Positives = 73/112 (65%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ DAKR +A+A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 66 PKEIKEYLDQYVIGQDDAKRYLAVAVYNHYKRLQQPVDDDGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA V ++R Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVEAAQR 177 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 238 DTRNILFICGGAFDGIERKIAQRMNTHVVGYNSVTNVRKIDKNDLMKYIVPQDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV HL L++ ILT+ ++++I QYK+L + +G+ L F ++++D L D Sbjct: 298 PEIIGRLPVLTHLNPLDRKALERILTEPKNSIIRQYKKLFEMDGVALTFDQEALDTLVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV +GAR L++++E V+ D + + K + A+YV Sbjct: 358 AVEYK-----LGARGLRSIVESVMMDAMYDLPSKKTKKFNVTADYV 398 >gi|299141493|ref|ZP_07034629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella oris C735] gi|298576829|gb|EFI48699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella oris C735] Length = 414 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV +P DL + Sbjct: 238 NTKNILFICGGAFDSIERKIAQRMNTHVVGYNSVQNVAKIDKNDLMKYVQPMDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + ++++I QY++L + +GI L F ED+++ + D Sbjct: 298 PEIIGRLPVLTYLNPLDREALRCILVEPKNSIIKQYEKLFEMDGIKLSFEEDTLNFIVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + K V+ +Y + Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYAK 399 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++++ N ++R Q PAD E+ NI++VG TG GKT Sbjct: 66 PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168 >gi|303236760|ref|ZP_07323339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella disiens FB035-09AN] gi|302482928|gb|EFL45944.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella disiens FB035-09AN] Length = 408 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 70/103 (67%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD YIIGQ +AKR +A+A+ N ++R Q P + D E+ NI++VG TG GKT Sbjct: 63 PKEIKAYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKEDDDVEVEKSNIIMVGSTGTGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 123 LLARTIAKLLNVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 165 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 234 Query: 292 NTDHILFIASGAF-------------HVS-------------------------RPADLL 313 +T +ILFI GAF HV R L+ Sbjct: 235 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKKDLMKYVLPQDLRSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L K +GI L FT +++D + D Sbjct: 295 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGINLSFTNEALDYIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ + F + K + A Y + Sbjct: 355 AVEYK-----LGARGLRSIVEAVMMEQMFELPSKRVKKYEVTASYAK 396 >gi|149369720|ref|ZP_01889572.1| ATP-dependent protease ATP-binding subunit [unidentified eubacterium SCB49] gi|149357147|gb|EDM45702.1| ATP-dependent protease ATP-binding subunit [unidentified eubacterium SCB49] Length = 423 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 187 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 246 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313 NT++ILFIA GAF H+S+ P DL + Sbjct: 247 NTENILFIAGGAFDGINRHISKRLNLQSVGFSATHKEEQLDKDHMLKYIIPKDLKDFGLI 306 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV ++ L+ + R ILT+ ++ +I QYK+L + + I L TE+ +D + + Sbjct: 307 PEIIGRLPVLTYMNPLDNATLRAILTEPKNAIIKQYKKLFEMDDIELIITEEGLDFIVEQ 366 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E VL D + K + ++ EYV+ Sbjct: 367 AIEYK-----LGARGLRSLCEAVLTDAMYELPGTDVKQLSVNVEYVK 408 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+ I + LD Y+IGQ K+ +++A+ N ++R P D E+ NI++VG TG GKT Sbjct: 75 PKMIKTFLDDYVIGQDHTKKVMSVAVYNHYKRLLQPKTEDDIEIQKSNIIMVGQTGTGKT 134 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 135 LVAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 177 >gi|332878106|ref|ZP_08445836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684068|gb|EGJ56935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 411 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILFI GAF H+ + P DL + Sbjct: 236 DTRNILFICGGAFDGIEKKIAQRMNTHVVGYNSVQNMQHIDKSNLMKYILPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ +++++ Q +L + +GI L F ED+++ + D Sbjct: 296 PEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMDGIKLSFDEDTLEYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV N +GAR L+++ME ++ D F + KT + EY + Sbjct: 356 AVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTLEYAK 397 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PR+I + LD+Y+IGQ DAKR +A+A+ N ++R Q +D E+ NI++VG TG GKT Sbjct: 64 PRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA V+ ++R Sbjct: 124 LLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAAQR 175 >gi|227432008|ref|ZP_03914028.1| ATP-dependent protease ATP-binding subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352293|gb|EEJ42499.1| ATP-dependent protease ATP-binding subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 416 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R + + L EL NI L+GPTG G Sbjct: 64 TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV ++ G + Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTTASVPSQGGRKHPQQELIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPAD----- 311 NT +ILFI GAF H +P D Sbjct: 238 NTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANENAEALNDDNILHHVQPEDMTKFG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L SD ILT+ ++ LI QY L+ + + L+F D++DA+A Sbjct: 298 LIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVELEFQPDALDAMA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 VA+ ++ GAR L++++E V++D+ F Sbjct: 358 SVAIKRHT-----GARGLRSIIENVMKDVMF 383 >gi|262199990|ref|YP_003271199.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium ochraceum DSM 14365] gi|262083337|gb|ACY19306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium ochraceum DSM 14365] Length = 402 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 19/156 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP EIV ELDRY++GQ AKRA+++A+ N ++R + D EL NILL+GPTG GK Sbjct: 52 SPHEIVGELDRYVVGQGRAKRALSVAVYNHYKRIGMRGKSADVELQKGNILLIGPTGCGK 111 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121 T +++ LA+ PF + T TE GYVG +VE +I+ L A V ++ R DE Sbjct: 112 TLLAQTLAKKLDVPFAIADATTLTEAGYVGEDVESVIKALFRAAGGDVEKTARGILCIDE 171 Query: 122 V-------------REQASINAEERILDALVGKTAT 144 + R+ + ++ +L L GKTAT Sbjct: 172 IDKIARKGGSPSPTRDVSGEGVQQALLKILEGKTAT 207 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 58/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVS-TKYGS---------- 290 GI+ +DE DKI AR G+ VS EGVQ+ LL ++EG + + T G+ Sbjct: 165 GILCIDEIDKI-ARKGGSPSPTRDVSGEGVQQALLKILEGKTATITPDGARNRPQQELIQ 223 Query: 291 INTDHILFIASGAFH---------------------------------VSRPADL----- 312 I+T ILFI +GAF+ +R DL Sbjct: 224 IDTTDILFICTGAFNGLEDIVRRRVGERGLGFGAAIGTAQDDKDALRATARAEDLTKFGM 283 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V +L + +L ++ L QY+ L E + L FT+D++ A+A+ Sbjct: 284 IPEFMGRLPVVVSCDALGVDELSEVLWRPKNALSRQYERLFALEDVKLTFTQDALRAVAE 343 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A S GAR L+ ++E ++ D+ + L Sbjct: 344 EAHRRRS-----GARGLRAILEEIMLDVMYEIPSL 373 >gi|225023958|ref|ZP_03713150.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC 23834] gi|224942983|gb|EEG24192.1| hypothetical protein EIKCOROL_00825 [Eikenella corrodens ATCC 23834] Length = 418 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EIVS L++++IGQ+ AK+ +A+A+ N ++R + P + + EL NILL+GPTG GK Sbjct: 60 TPAEIVSNLNQHVIGQEQAKKVLAVAVYNHYKRLRYPKEGDNVELAKSNILLIGPTGSGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 120 TLLAQSLARRLDVPFVMADATTLTEAGYVGEDVEQIITKLL 160 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 173 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 232 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 233 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDEDADVTELFEIVEPEDLIKFG 292 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L + EG+ L ++ ++A Sbjct: 293 LIPELIGRLPVIATLAELDEEALISILTEPKNALVKQYQTLFEMEGVELKVQPSALRSIA 352 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVID 415 +A+ + GAR L++++ER L + F D++E KTVVID Sbjct: 353 KLAMQRKT-----GARGLRSIVERALLETMFRLPDIKEQVKTVVID 393 >gi|307610563|emb|CBX00151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella pneumophila 130b] Length = 424 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 65 TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310 +T +ILFI GAF VS+ Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+++ ILT ++ L Q++ L K EG L+F ++++ A+ Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ +GAR L++++E +L D + L+ VVID V Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401 >gi|54294747|ref|YP_127162.1| ATP-dependent protease ATP-binding subunit [Legionella pneumophila str. Lens] gi|148359405|ref|YP_001250612.1| ATP-dependent Clp protease ATP binding subunit ClpX [Legionella pneumophila str. Corby] gi|296107451|ref|YP_003619151.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Legionella pneumophila 2300/99 Alcoy] gi|61211413|sp|Q5WVJ1|CLPX_LEGPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214781|sp|A5ID16|CLPX_LEGPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|53754579|emb|CAH16063.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella pneumophila str. Lens] gi|148281178|gb|ABQ55266.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella pneumophila str. Corby] gi|295649352|gb|ADG25199.1| 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Legionella pneumophila 2300/99 Alcoy] Length = 424 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 65 TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310 +T +ILFI GAF VS+ Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+++ ILT ++ L Q++ L K EG L+F ++++ A+ Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ +GAR L++++E +L D + L+ VVID V Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401 >gi|116618615|ref|YP_818986.1| ATP-dependent protease ATP-binding subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271185|sp|Q03W09|CLPX_LEUMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116097462|gb|ABJ62613.1| ATP-dependent protease Clp, ATPase subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 416 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R + + L EL NI L+GPTG G Sbjct: 64 TPHEIVNELNDYVIGQEDAKKTLAVAVYNHYKRINENVAPTLDVELQKSNIALMGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTTASVPPQGGRKHPQQELIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPAD----- 311 NT +ILFI GAF H +P D Sbjct: 238 NTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANENAEALNDDNILHHVQPEDMTKFG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L SD ILT+ ++ LI QY L+ + + L+F D++DA+A Sbjct: 298 LIPEFIGRLPIVTVLDELTISDLTRILTEPKNALIKQYTALLGLDDVELEFQPDALDAMA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 VA+ ++ GAR L++++E V++D+ F Sbjct: 358 SVAIKRHT-----GARGLRSIIENVMKDVMF 383 >gi|317504965|ref|ZP_07962913.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae DSM 15606] gi|315663847|gb|EFV03566.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella salivae DSM 15606] Length = 414 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 +T +ILFI GAF HV +P DL + Sbjct: 238 DTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKSDLMKYVQPMDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + ++++I QYK+L + +GI L F ED++D + D Sbjct: 298 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYKKLFEMDGIKLSFEEDTLDFIVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + K V+ +Y + Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEVPSKRMKDFVVTLDYAK 399 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++++ N ++R Q P D E+ NI++VG TG GKT Sbjct: 66 PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPTDEDGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168 >gi|54297777|ref|YP_124146.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella pneumophila str. Paris] gi|61211415|sp|Q5X452|CLPX_LEGPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|53751562|emb|CAH12980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella pneumophila str. Paris] Length = 424 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 65 TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T +ILFI GAF + +D Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEASKVLGQLESDDLIKY 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+++ ILT ++ L Q++ L K EG L+F ++++ A+ Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRDEALIAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ +GAR L++++E +L D + L+ +VID V Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKIVIDESVV 401 >gi|304383400|ref|ZP_07365866.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii DSM 16973] gi|304335568|gb|EFM01832.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella marshii DSM 16973] Length = 412 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ +AKR +++++ N ++R Q PAD + E+ NI++VG TG GKT Sbjct: 64 PKEIKKYLDDYVIGQDEAKRYLSVSVYNHYKRLQQPADDKGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +ARL PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIARLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILFI GAF H+ + P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVRHIDKTDLMKYILPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL ++++I QY +L + +GI L F + +D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRNILVTPKNSIIKQYVKLFQMDGIELTFDNEVLDFIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L++++E ++ + + + K + +Y R + Sbjct: 356 AMEYK-----LGARGLRSIVEAIMMNAMYEVPSKRLKQFKVTPDYARAQL 400 >gi|61211423|sp|Q5ZUE0|CLPX_LEGPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 424 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 65 TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310 +T +ILFI GAF VS+ Sbjct: 237 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 296 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+++ ILT ++ L Q++ L K EG L+F +++ A+ Sbjct: 297 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRGEALIAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ +GAR L++++E +L D + L+ VVID V Sbjct: 357 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 401 >gi|52842085|ref|YP_095884.1| ATP-dependent protease ATP-binding subunit ClpX [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629196|gb|AAU27937.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 426 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD Y+IGQQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 67 TPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------HVSR-----------PA 310 +T +ILFI GAF VS+ Sbjct: 239 DTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSNDEVSKVLGQLESDDLIKY 298 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+++ ILT ++ L Q++ L K EG L+F +++ A+ Sbjct: 299 GLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSLFKMEGSELEFRGEALIAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ +GAR L++++E +L D + L+ VVID V Sbjct: 359 AKKALERK-----MGARGLRSILENILLDTMYDLPSLEGVNKVVIDESVV 403 >gi|163815264|ref|ZP_02206641.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759] gi|158449459|gb|EDP26454.1| hypothetical protein COPEUT_01424 [Coprococcus eutactus ATCC 27759] Length = 457 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI S LD Y+IGQ++AK+ +A+A+ N ++R D EL NIL+VGPTG GK Sbjct: 83 LKPKEIKSFLDEYVIGQEEAKKVLAVAVYNHYKRILAQKDFDVELQKSNILMVGPTGSGK 142 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 143 TYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 186 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 195 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 254 Query: 291 INTDHILFIASGAFH---------VSR-------------------------PAD----- 311 I+T +ILFI GAF V + P D Sbjct: 255 IDTTNILFICGGAFEGLEKIIENRVGQKSIGFNAEVVEQSEQDIGQLLKQVMPHDFVKYG 314 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV V L L++ ILT+ S + QYK+L + +G+ L+ +D++ +A Sbjct: 315 LIPEFVGRVPVAVTLDLLDEDALVRILTEPRSAICKQYKKLFELDGVELEIEDDALREIA 374 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ +ME ++ + Sbjct: 375 KEAMERKT-----GARGLRAIMENATLNLMY 400 >gi|227495368|ref|ZP_03925684.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis DSM 15436] gi|226831122|gb|EEH63505.1| ATP-dependent protease ATP-binding subunit [Actinomyces coleocanis DSM 15436] Length = 417 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RDELMPKNILLVGPTGV 64 P+EI L++Y+IGQ+DAKRA+++A+ N ++R A L EL NILL+GPTG Sbjct: 64 PKEIFDFLNQYVIGQEDAKRALSVAVYNHYKRLNAEAILGYPVEMELTKSNILLLGPTGT 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 GKTHLARSLARLLQVPFSIVDATALTEAGYVGEDVENILLKLIQDADGDIEKAQR 178 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPHQQFIEI 238 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF DL +P Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGKRTLGFGSELKSAHEYGDLYSQVTSEDLHKFGMIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +K+L++ D +LT+ ++ L+ QY++L + + L+FT D++ +A A Sbjct: 299 EFIGRLPVVTSVKNLDEDDLVRVLTEPKNALVRQYQQLFVLDDVELEFTRDALREIARKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 L + GAR L +++E+ L I F + + VI Sbjct: 359 NELKT-----GARALNSILEKTLAPIMFEVPSMPQIAKVI 393 >gi|117927947|ref|YP_872498.1| ATP-dependent protease ATP-binding subunit ClpX [Acidothermus cellulolyticus 11B] gi|166214751|sp|A0LSV2|CLPX_ACIC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117648410|gb|ABK52512.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidothermus cellulolyticus 11B] Length = 427 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 PREI LD+Y+IGQ+ AK+A+++A+ N ++R Q+ R EL NILL+GPTG Sbjct: 64 PREICEFLDQYVIGQETAKKALSVAVYNHYKRIQVGGSSRSSNDSVELAKSNILLIGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 CGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313 +T +ILFI GAF H R P DLL Sbjct: 240 DTTNILFIVGGAFAGLEKIIEARIGKKGIGFTATLHGKRDLNTADIFSHVMPEDLLKYGM 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + SL++ ILT+ ++ L+ QY+ L + + + L+FT+D+++A+AD Sbjct: 300 IPEFVGRLPVITTVTSLDREALIRILTEPKNALVRQYQRLFELDSVDLEFTDDALEAIAD 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLLSVMY 384 >gi|229827569|ref|ZP_04453638.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC 49176] gi|229788207|gb|EEP24321.1| hypothetical protein GCWU000182_02958 [Abiotrophia defectiva ATCC 49176] Length = 429 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Query: 5 FN-FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 FN + P +I LD+Y+IGQ DAK+A+A+A+ N ++R + L EL NI++VGPTG Sbjct: 58 FNLYKPEQIKDFLDQYVIGQDDAKKALAVAVYNHYKRVSMGKSLDVELQKSNIVMVGPTG 117 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+L PF + T TE GYVG +VE ++ L+ A Sbjct: 118 SGKTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENVLLKLIQSA 164 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 58/221 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 173 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKMLEGTVASVPPQGGRKHPHQEFLQ 232 Query: 291 INTDHILFIASGAFH----------------------------VSR------PAD----- 311 I+T ILFI GAF VS P D Sbjct: 233 IDTKDILFICGGAFDGIEKIIESRIDKKSIGFGGEIEDKSKKDVSELLKQLEPQDFVKFG 292 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR P+ V L L+++ I+T+ ++ ++ QYK+L++ +G+ L+F +++I +A Sbjct: 293 MIPEFIGRVPILVTLDLLDENALMRIITEPKNAMVKQYKKLLEFDGVELEFEDEAIREIA 352 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 S GAR L+++ME+ + D F+ +EK V Sbjct: 353 K-----QSAARKTGARGLRSIMEKTMLDTMFTIPS-EEKAV 387 >gi|293977811|ref|YP_003543241.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Sulcia muelleri DMIN] gi|292667742|gb|ADE35377.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Sulcia muelleri DMIN] Length = 344 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 54/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI ++ I VS EGVQ+ LL ++EGS V+ K + Sbjct: 123 GIVFIDEIDKISRKNDNPSITRDVSGEGVQQALLKILEGSIVNVPPNVGRKHPEQKLIKL 182 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLLPEI 316 NT +ILFIA GAF H + L+PE+ Sbjct: 183 NTKNILFIAGGAFEGLKNIISNRLNLSTIGFKKNVSIDGKDLLNFVSSHDLKKFGLIPEL 242 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ +L SL + + IL + +++I QYKEL + I L FT +ID + D A+ Sbjct: 243 IGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLKFTYSAIDLIVDKAIK 302 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 L+ +GAR L+T+ E++++D F+ DL +++++ID ++L Sbjct: 303 LS-----LGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 341 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 66/103 (64%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SPREI LD+Y+IGQ+DAK+ +++A+ N ++R + E+ NIL++G TG GKT Sbjct: 11 SPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGDTGTGKT 70 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I++ +++ PF V+ T TE GYVG +VE I+ L+ A Sbjct: 71 LIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSA 113 >gi|317139980|ref|XP_003189221.1| ATP-dependent Clp protease [Aspergillus oryzae RIB40] Length = 627 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 114/460 (24%), Positives = 188/460 (40%), Gaps = 89/460 (19%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE---------------- 50 +P+ + LD++++GQ AK+ +++A+ N ++R Q+L RDE Sbjct: 131 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQEL--QRRDEEAVELLAKRARRESVD 188 Query: 51 ------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 L NILL+GP+GVGKT +++ LA++ PF + T FT+ GY+G + E + Sbjct: 189 HSSTIQLEKSNILLLGPSGVGKTLMAKTLAKVLSVPFSISDCTPFTQAGYIGEDAEVCVH 248 Query: 105 DLVDVAINIVRESRR-----DEVREQASINAE-------ERILDALVGKTATSNTREVFR 152 L+ A V ++ R DEV + A+ E + AL+ K T +V Sbjct: 249 RLLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVGGEGVQQALL-KIIEGTTVQVQA 307 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 K+ ++ + + ++S + N P G+ E+++ R I Sbjct: 308 KQEKNAPRAGGTPN--TYPSNSPLGNSPYPPSNGGGMSQKGEVYNV-----RTDNILFIF 360 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQ 272 + L + + MD + R SI F D G + Sbjct: 361 SGAFVGLHK------VVMDRISRGSIG--------FGQPVRTPSNSDERPGQSTT---AN 403 Query: 273 RDLLPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL-----LP 314 +P+V GS Y H+ F S A + P DL +P Sbjct: 404 NQPVPIVPGSEEEALY----KKHLPFFTSASPESPDGEPTYFNALDLINPTDLQNYGFIP 459 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L +L + ILT+ ++L+ QY L GI L FT ++ +A A Sbjct: 460 ELVGRVPVTAALSTLTQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIAANA 519 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L+T ME +L D + K V++ Sbjct: 520 FTMGT-----GARALRTEMETILSDAMYETPGSSVKFVLV 554 >gi|261379792|ref|ZP_05984365.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria subflava NJ9703] gi|284797477|gb|EFC52824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria subflava NJ9703] Length = 421 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL NILL+GPTG GK Sbjct: 67 TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ ++ Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L + E + L+F ED++ ++A Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ + GAR L++++ER L D ++ DL++ VVI+ E V Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVV 403 >gi|161833701|ref|YP_001597897.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Sulcia muelleri GWSS] gi|152206191|gb|ABS30501.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus Sulcia muelleri GWSS] Length = 343 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 54/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI ++ I VS EGVQ+ LL ++EGS V+ K + Sbjct: 122 GIVFIDEIDKISRKNDNPSITRDVSGEGVQQALLKILEGSIVNVPPNVGRKHPEQKLIKL 181 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLLPEI 316 NT +ILFIA GAF H + L+PE+ Sbjct: 182 NTKNILFIAGGAFEGLKNIISNRLNLSSIGFKKNVSIDGKDLLNFVSSHDLKKFGLIPEL 241 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ +L SL + + IL + +++I QYKEL + I L FT +ID + D A+ Sbjct: 242 IGRLPIITNLNSLERESLKRILLEPNNSIIKQYKELFLLDKIKLKFTYSAIDLIVDKAIK 301 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 L+ +GAR L+T+ E++++D F+ DL +++++ID ++L Sbjct: 302 LS-----LGARGLKTICEKIIKDYMFNI-DLIKESLIIDKFDIKL 340 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 66/103 (64%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SPREI LD+Y+IGQ+DAK+ +++A+ N ++R + E+ NIL++G TG GKT Sbjct: 10 SPREIKYFLDKYVIGQEDAKKTISVAVYNHYKRIYYSYKAKVEIDKSNILMIGDTGTGKT 69 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I++ +++ PF V+ T TE GYVG +VE I+ L+ A Sbjct: 70 LIAKSISKFLNVPFTIVDATSLTEAGYVGEDVESILTKLLQSA 112 >gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM 10507] gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM 10507] Length = 432 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI + LD Y+IGQ +AK+A+++A+ N ++R P L EL NIL++GPTG GK Sbjct: 65 MTPQEIHNFLDEYVIGQDEAKKALSVAVYNHYKRVMAPKSLDVELQKSNILMLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+L PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 176 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 235 Query: 290 SINTDHILFIASGAFH------VSR----------------------------PAD---- 311 I+T +ILFI GAF +R P D Sbjct: 236 QIDTTNILFICGGAFEGLEKIIATRKDQKSIGFGADVRSAKEHNVGELLREVMPEDFIKF 295 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV V L +L++ IL + +++L+ QY++L + +G+ LDF +D++ + Sbjct: 296 GLIPEFIGRVPVVVSLNALDEEALIRILQEPKNSLVKQYRKLFELDGVELDFQKDALKLI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ ++ + GAR L+++ME + D+ + SD + VI E V Sbjct: 356 AEKSLERKT-----GARGLRSIMESTMMDLMYQVPSDHTIQKCVITKEAV 400 >gi|319637747|ref|ZP_07992513.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria mucosa C102] gi|317400902|gb|EFV81557.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria mucosa C102] Length = 421 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL NILL+GPTG GK Sbjct: 67 TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 61/237 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ ++ Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR P+ L L++ ILT+ ++ L+ QY+ L + E + L+F ED++ ++A Sbjct: 300 LIPELIGRLPMIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVSLEFEEDALRSIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 +A+ + GAR L++++ER L D ++ DL++ VVI+ E V GD P Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYALPDLKDVAKVVINKEVVEK--GDQP 409 >gi|225075808|ref|ZP_03719007.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens NRL30031/H210] gi|224952841|gb|EEG34050.1| hypothetical protein NEIFLAOT_00824 [Neisseria flavescens NRL30031/H210] Length = 421 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL NILL+GPTG GK Sbjct: 67 TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ ++ Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L + E + L+F ED++ ++A Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFEMEDVGLEFEEDALRSIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ + GAR L++++ER L D ++ DL+ VVI+ E V Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYALPDLKGVAKVVINKEVV 403 >gi|326790231|ref|YP_004308052.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium lentocellum DSM 5427] gi|326540995|gb|ADZ82854.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium lentocellum DSM 5427] Length = 428 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD Y+IGQ+DAK+A+A+A+ N ++R + D E+ NILL+GPTG GKT Sbjct: 65 PKEIKAHLDEYVIGQEDAKKALAVAVYNHYKRIYKQSKSNDVEVQKSNILLLGPTGTGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LLAQTLAKMLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312 +T +ILFI GAF VS+ P DL Sbjct: 237 DTTNILFICGGAFDGLDKIIERRVGQKSMGFGANIVSKKEKSIGELFKQIEPQDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P V L +L+K ILT+ ++ L QY+ L + +GI L+F E+++ A+A+ Sbjct: 297 IPEFVGRIPSIVSLNNLDKEALIKILTEPKNALTKQYEHLFELDGIKLEFEEEALVAVAE 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYVR 420 +A+ + GAR L+ + E ++ +I + A + + + ++I A+ ++ Sbjct: 357 LAIERET-----GARGLRAIFETMMRNIMYDAPSMGDALEKIIIHADVIK 401 >gi|241760359|ref|ZP_04758454.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria flavescens SK114] gi|241319237|gb|EER55715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria flavescens SK114] Length = 421 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL NILL+GPTG GK Sbjct: 67 TPAEIVANLNDHVIGQEHAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 127 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 167 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ ++ Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 240 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISALFETVEPEDLIKFG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E + L+F ED++ ++A Sbjct: 300 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFAMEDVGLEFEEDALRSIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ + GAR L++++ER L D ++ DL++ VVI+ E V Sbjct: 360 KLAMERKT-----GARGLRSIVERCLLDTMYTLPDLKDVAKVVINKEVV 403 >gi|329119329|ref|ZP_08248015.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464474|gb|EGF10773.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 422 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 SP EIV+ L+ ++IGQ+ AK+A+A+A+ N ++R + P A EL NILL+GPTG GK Sbjct: 62 SPAEIVANLNDHVIGQEQAKKALAVAVYNHYKRLRHPKASDNVELSKSNILLIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 122 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 162 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 175 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILF+ GAF + P DL+ Sbjct: 235 DTTNILFVCGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADISELFEIVEPEDLIKFG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L++ EG L+F + ++ +A Sbjct: 295 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQALIRMEGAELEFEDAALRGIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 +A+ + GAR L++++ER L + + L Q K V++ AE + Sbjct: 355 KLAMTRKT-----GARGLRSIVERALLETMYLLPGLPQVKKVIVTAEVI 398 >gi|209964555|ref|YP_002297470.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum centenum SW] gi|238066659|sp|B6ISY6|CLPX_RHOCS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209958021|gb|ACI98657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodospirillum centenum SW] Length = 421 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SPR+I + LD Y+IGQ+ AKR +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 65 SPRDICAVLDDYVIGQEHAKRVLSVAVHNHYKRLAHGAKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLERIIAARGKGTSIGFGADVRAPDERRTGDILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT ++ L+ QY+ L + E + L E+++ ++A Sbjct: 298 IPEFVGRLPVVATLHDLDENALIEILTKPKNALVKQYQRLFEMEDVKLGIHEEALRSIAV 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L + F LQ + +VI+ E V Sbjct: 358 KAIQRKT-----GARGLRSIMESILLEPMFDLPGLQGVEEIVINKEVV 400 >gi|126462594|ref|YP_001043708.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides ATCC 17029] gi|221639634|ref|YP_002525896.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides KD131] gi|332558620|ref|ZP_08412942.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides WS8N] gi|166215194|sp|A3PKS0|CLPX_RHOS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763860|sp|B9KJU8|CLPX_RHOSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126104258|gb|ABN76936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter sphaeroides ATCC 17029] gi|221160415|gb|ACM01395.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodobacter sphaeroides KD131] gi|332276332|gb|EGJ21647.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides WS8N] Length = 421 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDARGVGELFKELEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L D F L Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386 >gi|149926125|ref|ZP_01914387.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] gi|149824943|gb|EDM84155.1| ATP-dependent protease ATP-binding subunit [Limnobacter sp. MED105] Length = 423 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI S LD+Y+IGQ AKR +A+A+ N ++R + + D EL NILLVGPTG GK Sbjct: 65 TPQEIRSILDQYVIGQDKAKRVLAVAVYNHYKRLRHMSKKDDIELTKSNILLVGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYEVEKAQR 177 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQI 237 Query: 292 NTDHILFIASGAFH----VSR------------------------------PADLL---- 313 +T ++LFI GAF V R P DL+ Sbjct: 238 DTTNVLFIVGGAFEGLDKVIRNRSERSGIGFGATVKSKEEGNVGTLLAEVEPEDLIKFGI 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L+ L++ ILT ++ ++ Q+++L++ +G L+ ++ A+A Sbjct: 298 IPELVGRLPVIATLEELDEPALIEILTKPKNAMVKQFEKLLEMDGAELEVRPSALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A+ + GAR L+T++E+ L I + D K VVID Sbjct: 358 KAIQRKT-----GARGLRTILEQALLGIMYDLPGDTNVKKVVID 396 >gi|332977274|gb|EGK14065.1| ATP-dependent Clp protease ATP-binding subunit [Psychrobacter sp. 1501(2011)] Length = 425 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 14/117 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53 +P+EI LD Y+IGQ+ AK+A+++A+ N ++R ++ A L D EL Sbjct: 67 TPKEIRQHLDSYVIGQETAKKALSVAVYNHYKRLKVAAKLADDRKQAKIGADDAMVELSK 126 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I++ L+ A Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 183 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ + +G + Sbjct: 193 GIIYVDEIDKISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQELIQV 252 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +IL I GAF P DL+ Sbjct: 253 DTSNILIIVGGAFSGLDKVIQQRTEKSGIGFNAEVKSKEDGKQLTELFKQVEPEDLIKFG 312 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + E L FTE+ + A+A Sbjct: 313 LIPELIGRLPVIATLEELDEDALMQILTEPKNAIIKQYQYLFEMEDAELTFTEEGLKAIA 372 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D + + E KTVV+D Sbjct: 373 HKAMERKT-----GARGLRSIVENALLDTMYELPSMSEAKTVVVD 412 >gi|320546908|ref|ZP_08041210.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equinus ATCC 9812] gi|320448426|gb|EFW89167.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equinus ATCC 9812] Length = 409 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R AD RDE L NILL+GPTG Sbjct: 64 PKELLATLDEYVVGQERAKRALAVAVYNHYKRVSF-ADSRDEEDVELQKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNRKIDEDASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F ED++ A+A+ A Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F +E T V Sbjct: 358 IKRKT-----GARGLRSIIEETMMDIMFEIPSREEVTKV 391 >gi|116334975|ref|YP_802470.1| ATP-dependent protease ATP-binding subunit [Candidatus Carsonella ruddii PV] gi|116235256|dbj|BAF35104.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii PV] Length = 355 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 4/108 (3%) Query: 4 TFNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59 + NFS P +I ELDRYIIGQ + K+ +++A+ N ++R L + L NI+LV Sbjct: 10 SINFSNYLNPEKIKLELDRYIIGQNETKKIISVAVYNHYKRLFLIKSKKILLEKSNIILV 69 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT + + LA++ P I V+ T FTE GYVG +VE II+ L+ Sbjct: 70 GPTGCGKTLMVKTLAKIVNVPIICVDATSFTEAGYVGDDVESIIQKLL 117 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 49/196 (25%) Query: 246 IVFLDEFDKIVAR-DSGNGIGVSREGVQRDLLPLVEGSSVST----------KYGSINTD 294 I+++DE DKI + D +G VS EGVQ+ +L L+EG ++S + +I+T Sbjct: 131 IIYIDEIDKISKKTDFFSGKDVSGEGVQQSMLKLIEGITLSIPSLVEKKNSQQIFNIDTT 190 Query: 295 HILFIASGAF----------------------------HVSRPADLL-----PEIQGRFP 321 +ILFI GAF + + DL+ PE GR P Sbjct: 191 NILFIVGGAFSGIESIINFRINQELNFIKKNFELTDIINYTSSEDLINFGIIPEFLGRLP 250 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 + K L++S++ IL ++LI Q+ L EG+ + FT ++I +A +AV Sbjct: 251 IIAKFKELSESEYIYILIKPRNSLIKQFCYLFLVEGVNIKFTFNAIKEIARIAVK----- 305 Query: 382 GDIGARRLQTVMERVL 397 IGAR L++++E VL Sbjct: 306 RKIGARGLKSILEFVL 321 >gi|281425295|ref|ZP_06256208.1| hypothetical protein HMPREF0971_02267 [Prevotella oris F0302] gi|281400588|gb|EFB31419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella oris F0302] Length = 414 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV +P DL + Sbjct: 238 NTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKNDLMKYVQPMDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + ++++I QY++L + +GI L F ED+++ + D Sbjct: 298 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFEMDGIKLSFEEDTLNFIVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + K V+ +Y + Sbjct: 358 AVEYK-----LGARGLRSIVESIMMDAMFEIPSKRTKEFVVTLDYAK 399 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++++ N ++R Q PAD E+ NI++VG TG GKT Sbjct: 66 PKEIKKYLDEYIIGQDEAKRFLSVSVYNHYKRLQQPADDGGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 126 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168 >gi|296136116|ref|YP_003643358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas intermedia K12] gi|295796238|gb|ADG31028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thiomonas intermedia K12] Length = 420 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R + D EL NILLVGPTG GK Sbjct: 68 TPTEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADL----- 312 +T +ILFI GAF ++P DL Sbjct: 241 DTTNILFICGGAFDGLEKVIRNRSEKSGIGFSATVKTQSERSVSETFLQAQPDDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L++ ILT +++L+ QY++L + +GI L+F ++DA+A Sbjct: 301 IPELVGRLPVVAALEELDEPALVEILTAPKNSLVKQYQKLFEMDGIKLEFRPAALDAIAH 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E+ L D+ F + Q +VV+D Sbjct: 361 KALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVD 399 >gi|325855154|ref|ZP_08171777.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella denticola CRIS 18C-A] gi|325483891|gb|EGC86835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella denticola CRIS 18C-A] Length = 412 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF +V+R P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL D +++++ QY +L +GI L FT+ ++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVDPKNSIVKQYVKLFSMDGITLSFTDPALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D F + K+ + EYVR + Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAI 69 EI LD YIIGQ +AKR +++A+ N ++R Q P D E+ NI++VG TG GKT + Sbjct: 66 EIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKTLL 125 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 126 ARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 >gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas wittichii RW1] gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas wittichii RW1] Length = 424 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ AKR +++A+ N ++R A D EL NILLVGPTG GK Sbjct: 66 TPHEICEHLDQYVIGQAKAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ +ARL PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 126 TLLAQTMARLLDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 178 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 179 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF +V+ P + L Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEERRTGETLQQCEPEDLLKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L+++ ILT ++ L+ QY++L EG+ L FT+D++ A+A Sbjct: 299 IPEFVGRLPVIATLMDLDEAALVEILTAPKNALVKQYQKLFDMEGVKLGFTDDALVAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 359 KAITRKT-----GARGLRSILEGLLLDTMF 383 >gi|294340352|emb|CAZ88733.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thiomonas sp. 3As] Length = 422 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD+Y+IGQ+ AKR +A+A+ N ++R + D EL NILLVGPTG GK Sbjct: 68 TPAEIKAILDQYVIGQEAAKRILAVAVYNHYKRLKHIGQTSDVELAKSNILLVGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADL----- 312 +T +ILFI GAF ++P DL Sbjct: 241 DTTNILFICGGAFDGLEKVIRNRSEKSGIGFSATVKTQSERSVSETFLQAQPDDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L++ ILT +++L+ QY++L + +GI L+F ++DA+A Sbjct: 301 IPELVGRLPVVAALEELDEPALIEILTAPKNSLVKQYQKLFEMDGIKLEFRPAALDAIAH 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E+ L D+ F + Q +VV+D Sbjct: 361 KALERKT-----GARGLRSIVEQALLDLMFDLPNAQGVASVVVD 399 >gi|6942107|gb|AAF32319.1|AF218420_2 ClpX [Brucella abortus] Length = 423 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 1/110 (0%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTA 68 R+I++ LD Y+IGQ+DAKR +++A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 RQIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGKTY 128 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +++ LAR+ PFI + T TE GYVG +VE II L+ A V +R Sbjct: 129 LAQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAR 178 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 58/227 (25%) Query: 246 IVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSIN 292 IV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ ++ Sbjct: 180 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVD 239 Query: 293 TDHILFIASGAFH-----VS-----------------------------RPADLL----- 313 T +ILFI GAF +S P DLL Sbjct: 240 TTNILFICGGAFAGLDRIISARGEKTSIGFGATVKSVDERRIGEVFKELEPEDLLKFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+ ILT+ ++ L+ QY+ L E + L F +D++ A+A+ Sbjct: 300 PEFVGRLPVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV + GAR L+++ME++L D F L+ + VVI + V Sbjct: 360 AVERKT-----GARGLRSIMEKILLDTMFELPTLEGVREVVISGDVV 401 >gi|325204365|gb|ADY99818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240355] Length = 414 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ + EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAEGKVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|237653229|ref|YP_002889543.1| ATP-dependent protease ATP-binding subunit ClpX [Thauera sp. MZ1T] gi|237624476|gb|ACR01166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thauera sp. MZ1T] Length = 422 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P EI S LD+Y+IGQ AKR++A+A+ N ++R + L A D EL NILL+GPTG G Sbjct: 66 TPHEICSILDQYVIGQSLAKRSLAVAVYNHYKRLRHLDARQDDVELAKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE I++ L+ Sbjct: 126 KTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIVQKLL 167 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ S+ + G + Sbjct: 180 GIIYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPNQDFIQV 239 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313 +T ++LFI GAF V R P DL+ Sbjct: 240 DTTNVLFICGGAFDGLEKVIRNRTEKVGIGFGAEVKSKEGKNLTDTFRQVEPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L+ L+++ IL + ++ L+ QY++L EG+ L+ +++ A+A Sbjct: 300 IPELIGRLPVVATLQELDEAALIQILIEPKNALVKQYQKLFSMEGVELEIRPNALHAVAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L DI + L VV+D Sbjct: 360 KAIKRKT-----GARGLRSILEVALLDIMYDLPTLDNVAKVVVD 398 >gi|297569272|ref|YP_003690616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurivibrio alkaliphilus AHT2] gi|296925187|gb|ADH85997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurivibrio alkaliphilus AHT2] Length = 419 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRD-ELMPKNILLVGPTG 63 P EI LD Y++GQ+ AKR++A+A+ N ++R + L D +D EL NILL+GPTG Sbjct: 63 LKPSEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGDLEGDYQDVELQKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A N V + R Sbjct: 123 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVSLLQAADNDVERASR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 60/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ S +Y + Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYIKL 238 Query: 292 NTDHILFIASGAFH--------------------------------VSRPAD-------L 312 +T +ILFI GAF +++ A L Sbjct: 239 DTSNILFICGGAFVGLEQVIGQRAGSKSLGFGAKVVGKSKKKTGEILAQVASEDLLRYGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV + L + D IL + ++ L QY++L + I L FTE ++ A+A Sbjct: 299 IPELVGRLPVTATMDELEEEDLIRILREPKNALTRQYEKLFAFDDIRLRFTEGALAAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFP 427 A+ + GAR L++VME + DI + S + VI + + H D+P Sbjct: 359 EAIQRKA-----GARGLRSVMEAAMLDIMYDLPSQENVRECVISEQVITNH--DYP 407 >gi|237747782|ref|ZP_04578262.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] gi|229379144|gb|EEO29235.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes OXCC13] Length = 423 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R + D EL NILLVGPTG G Sbjct: 67 TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKFYGGKNDDVELSKSNILLVGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQGCEYDVEKAQR 180 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G S+ Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKMIEGTMASVPPQGGRKHPNQDFISV 240 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +I+FI GAF V P D L Sbjct: 241 DTTNIMFICGGAFDGLTKIISNRSEKGGIGFSARVKSPTDIVESEKLADVEPEDLIKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L + IL ++ L+ QY +L++ EG L+ +++ A+A Sbjct: 301 IPELIGRLPVVAVLHELTEEALVDILEKPKNALVKQYTKLLQMEGAELEIRPEALRAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D+ ++ Q T VVID V Sbjct: 361 KALERKT-----GARGLRSIMENLLLDVMYNLPTEQNVTKVVIDENTV 403 >gi|238917376|ref|YP_002930893.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] gi|259491257|sp|C4Z1T5|CLPX_EUBE2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238872736|gb|ACR72446.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] Length = 422 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P++I LD Y+IGQ +AK+ +A+A+ N ++R +DL EL NIL++GPTG GK Sbjct: 68 LKPKQIKEFLDDYVIGQDEAKKVLAVAVYNHYKRIMSQSDLDVELQKSNILMLGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 128 TFLAQNLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 57/212 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 179 QYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELI 238 Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADLL-- 313 I+T +ILFI GAF H + P DL+ Sbjct: 239 PIDTTNILFICGGAFDGLEKIIESRMDKSSIGFNSELKEKSNDDVGEMFHKALPQDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV V L SL++ IL + ++ +I QY+ L + + L+FT+++++A+ Sbjct: 299 GLIPEFVGRVPVVVSLDSLDEEALVRILKEPKNAIIKQYQALFGLDEVALEFTDEAVEAV 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + + GAR L++++E V+ ++ + Sbjct: 359 AHKSFERKT-----GARGLRSILESVMNEVMY 385 >gi|184155096|ref|YP_001843436.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus fermentum IFO 3956] gi|227514779|ref|ZP_03944828.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum ATCC 14931] gi|260663639|ref|ZP_05864528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus fermentum 28-3-CHN] gi|183226440|dbj|BAG26956.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus fermentum IFO 3956] gi|227086888|gb|EEI22200.1| ATP-dependent protease ATP-binding subunit [Lactobacillus fermentum ATCC 14931] gi|260551865|gb|EEX24980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus fermentum 28-3-CHN] Length = 416 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P+EI+++LD Y+IGQQDAK+ +A+A+ N ++R + D D EL NI ++GPTG Sbjct: 63 TPQEILNQLDDYVIGQQDAKKTLAVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 60/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSKEINDVTEKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++D ILT+ ++ L+ QY+EL++ +G L FT ++ A+A Sbjct: 297 LIPEFIGRLPVMTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422 +A++ N+ GAR L++++E V+ DI F Q+ VVI+ E V H Sbjct: 357 KMAIDRNT-----GARGLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKH 403 >gi|150026122|ref|YP_001296948.1| ATP-dependent protease ATP-binding subunit [Flavobacterium psychrophilum JIP02/86] gi|149772663|emb|CAL44146.1| S14 family, ATP-dependent Clp protease ATP-binding subunit [Flavobacterium psychrophilum JIP02/86] Length = 410 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PAD-----LL 313 NT ILFIA GAF +S+ P D L+ Sbjct: 234 NTQDILFIAGGAFDGIERIISKRLNRQAVGYSTSKNVDNIDKDNLLQYIIPKDIKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+K R ILT ++ LI QY++L + ++ + T++++D + D Sbjct: 294 PEIIGRLPVLTHMDPLDKETLRAILTQPKNALIKQYQKLFMMDDVVFNITDEALDFIVDK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E +L D + +K + ID EY Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSDDKILNIDKEYAH 395 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I + LD+Y+IGQ K+ +++A+ N ++R D + E+ NI++VG TG GKT Sbjct: 62 PKQIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQNDHDEVEIEKSNIIMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ P V+ T TE GYVG +VE I+ L+ A V ++ R Sbjct: 122 LVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVAKAER 173 >gi|167646808|ref|YP_001684471.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter sp. K31] gi|189082487|sp|B0SZ62|CLPX_CAUSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167349238|gb|ABZ71973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter sp. K31] Length = 420 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +A+A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPREICEVLDDYVIGQNHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V+ P + L Sbjct: 238 DTTNILFICGGAFAGLERIISARGQGKSIGFGAKVADPEERRTGEILRGVEPDDLQRFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ ILT+ ++ + QY+ L + E I L FTED++ +A Sbjct: 298 IPEFIGRLPVIATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHGVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+++ME +L + F Sbjct: 358 KAI-LRKT----GARGLRSIMEGILLETMF 382 >gi|330996066|ref|ZP_08319960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paraprevotella xylaniphila YIT 11841] gi|329574063|gb|EGG55641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paraprevotella xylaniphila YIT 11841] Length = 411 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILFI GAF H+ + P DL + Sbjct: 236 DTRNILFICGGAFDGIEKKIAQRMNTHVVGYNSVQNMQHIDKSNLMKYILPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ +++++ Q +L + +GI L F ED+++ + D Sbjct: 296 PEIIGRLPVLTYLNPLDRTALRNILTEPKNSIVKQQVKLFEMDGIKLSFDEDTLEYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV N +GAR L+++ME ++ D F + KT + +Y + Sbjct: 356 AVEYN-----LGARGLRSIMESIMMDAMFEIPSKKVKTFKVTLDYAK 397 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PR+I + LD+Y+IGQ DAKR +A+A+ N ++R Q +D E+ NI++VG TG GKT Sbjct: 64 PRDIKAYLDQYVIGQDDAKRNLAVAVYNHYKRLAQQTSDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA V+ ++R Sbjct: 124 LLARTIAKLLHVPFTIVDATVFTEAGYVGEDVESILSRLLQVADYNVQAAQR 175 >gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas sp. S17] gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas sp. S17] Length = 420 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD Y+IGQ+ AKR +++A+ N ++R A D EL NILLVGPTG GK Sbjct: 63 TPQEICNVLDDYVIGQKQAKRVLSVAVHNHYKRLNHGAKGADVELAKSNILLVGPTGCGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 175 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 176 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 235 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF +V+ P + L Sbjct: 236 DTTNILFICGGAFAGLEKIIGDRLQGKSIGFGAYVAAPEEKRTGEYLRQTEPEDLLKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ + IL++ ++ L+ QY++L + E + LDFT+D++ +A Sbjct: 296 IPEFVGRLPVIATLEDLDIAALVKILSEPKNALVKQYQKLFEMENVELDFTDDALTTVAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 356 KAIERKT-----GARGLRSILEGILLDTMF 380 >gi|319407113|emb|CBI80750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella sp. 1-1C] Length = 424 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 240 DTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 300 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++MER+L + F Sbjct: 360 KAIERKT-----GARGLRSIMERILLNTMF 384 >gi|313682640|ref|YP_004060378.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum kujiense DSM 16994] gi|313155500|gb|ADR34178.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum kujiense DSM 16994] Length = 403 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 68/103 (66%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +IV L++YIIGQ+DAK+ +A+AL N ++R + P EL NI+LVGPTG GKT Sbjct: 58 TPEKIVEFLNKYIIGQEDAKKVLAVALYNHYKRIENPVYNNVELEKSNIMLVGPTGSGKT 117 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ L+++ PF + T TE GYVG +VE I+ L+ A Sbjct: 118 LLAKSLSKIMQVPFAVADATALTEAGYVGEDVESILSRLLAAA 160 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 53/216 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + + +G VS EGVQ+ LL ++EG+ V +T+ Sbjct: 170 GIIYIDEVDKIARKGESSTMGRDVSGEGVQQGLLKILEGAEVYVPIKGSRKNSTTETVLF 229 Query: 292 NTDHILFIASGAF-------HV----------SRPAD---------------LLPEIQGR 319 NT H+LF+ GAF H S AD ++PE GR Sbjct: 230 NTSHVLFVCGGAFVGLVPDTHTKKTNKVGFSKSASADAKPKKIDAKALVHYGMIPEFIGR 289 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L K IL + ++ LI Q++ L +GI L+F + +++A+A A++ Sbjct: 290 IPVVAQLGELTKDQMIQILQEPDNALIKQFQALFDMDGIELNFEDKALEAVAQKAIDRG- 348 Query: 380 TVGDIGARRLQTVMERVLEDISFSA---SDLQEKTV 412 +GAR L+ ++E + + FS +LQ TV Sbjct: 349 ----VGARGLRGIIEEAMLPLQFSCPSKKNLQSVTV 380 >gi|160902924|ref|YP_001568505.1| ATP-dependent protease ATP-binding subunit [Petrotoga mobilis SJ95] gi|160360568|gb|ABX32182.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Petrotoga mobilis SJ95] Length = 409 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I SELD+Y+IGQ+ AK+ +++A+ N ++R ++ D EL N+LL+GPTG GK Sbjct: 60 TPRQIKSELDKYVIGQETAKKIISVAVYNHYKRIYSSKNINDVELDKSNVLLIGPTGTGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T I++ LAR+ PF + T TE GYVG +VE +I L+ V+++ + Sbjct: 120 TLIAQTLARILDVPFAIADATTLTEAGYVGEDVENVILRLLQACDYDVKKAEK 172 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ +V + G I Sbjct: 173 GIIYIDEIDKISRKSPNPSITRDVSGEGVQQALLKIVEGTLANVPPQGGRKHPYQEFIQI 232 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------L 312 +T ILFIA GAF + AD L Sbjct: 233 DTSKILFIAGGAFDGLTDIIKHRVKDSSLGFGADIKSNNKQRDGEVLKNIVQDDLIKYGL 292 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GRFPV L L++ D I + ++ L QY+++++ EGI L+ T +++ + Sbjct: 293 IPEFVGRFPVVATLNDLDEEDLIKIAMEPKNALFKQYQKMLEIEGIKLEITAEAMKEICS 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK--TVVIDAEYV 419 A+ + GAR L+T+ E ++ D+ + A +++ K +VID E V Sbjct: 353 QALKRGT-----GARALKTIFEEIMLDVMYEAPEIKNKINKIVIDEEVV 396 >gi|237745592|ref|ZP_04576072.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] gi|229376943|gb|EEO27034.1| ATP-dependent protease ATP-binding subunit [Oxalobacter formigenes HOxBLS] Length = 423 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R + D EL NILLVGPTG G Sbjct: 67 TPKEICNLLDQYVIGQEQAKKILSVAVYNHYKRLKYYGGKNDDVELAKSNILLVGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 180 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +I+FI GAF V P++ L Sbjct: 241 DTSNIMFICGGAFDGLSKIIANRSEKGGIGFSAAVKSPSEKAGSEMLLNVEPEDLIKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L ++ IL ++ L+ QY +L++ EG L+ D++ A+A Sbjct: 301 IPELIGRLPVVAVLNDLTENALIEILVKPKNALVKQYTKLLEMEGAELEIRPDALHAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME++L D+ + Sbjct: 361 KALERKT-----GARGLRSIMEQLLLDVMY 385 >gi|261365228|ref|ZP_05978111.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria mucosa ATCC 25996] gi|288566311|gb|EFC87871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria mucosa ATCC 25996] Length = 422 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ EL NILL+GPTG GK Sbjct: 65 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 165 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 298 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVQLEFEEEALRSIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++ER L D + DL+ T VVID + + Sbjct: 358 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVVIDKDVI 401 >gi|89070384|ref|ZP_01157691.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] gi|89044031|gb|EAR50206.1| ATP-dependent protease ATP-binding subunit [Oceanicola granulosus HTCC2516] Length = 422 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R AD D EL NILL+GPTG GK Sbjct: 65 TPREICEVLDDYVIGQMHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNILLIGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDVEERGVGEVFKSLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L E L FT+D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFDLEDTKLTFTDDAMKAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F + VV++ E V Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVNEVVVNEEAV 399 >gi|16126204|ref|NP_420768.1| ATP-dependent protease ATP-binding subunit [Caulobacter crescentus CB15] gi|221234976|ref|YP_002517412.1| ATP-dependent protease ATP-binding subunit ClpX [Caulobacter crescentus NA1000] gi|239977101|sp|B8GX14|CLPX_CAUCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239977102|sp|P0CAU2|CLPX_CAUCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3688207|emb|CAA09092.1| clpX protein [Caulobacter crescentus CB15] gi|13423422|gb|AAK23936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter crescentus CB15] gi|220964148|gb|ACL95504.1| ATP-dependent endopeptidase clp, ATP-binding subunit ClpX [Caulobacter crescentus NA1000] Length = 420 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +A+A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V+ P + L Sbjct: 238 DTTNILFICGGAFAGLEKIISARGAAKSIGFGAKVTDPEERRTGEILRNVEPDDLQRFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ ILT+ ++ + QY+ L + E I L FTED++ +A Sbjct: 298 IPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME +L + F Sbjct: 358 KAIARKT-----GARGLRSIMEGILLETMF 382 >gi|296446425|ref|ZP_06888369.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus trichosporium OB3b] gi|296256060|gb|EFH03143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylosinus trichosporium OB3b] Length = 420 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTGVGK Sbjct: 64 TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV +P DLL Sbjct: 237 DTTNILFICGGAFAGLEKIISSRGRGTSIGFGATVQAPDERRTGDIFRHV-QPEDLLKFG 295 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ + ILT+ ++ L+ QY+ L + E L F ++++ ++A Sbjct: 296 LIPEFVGRLPVIATLEDLDEEALKRILTEPKNALVKQYQRLFEMESTELTFQDEALSSVA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ ++ GAR L+++ME +L D F L+ + VVI E V Sbjct: 356 RKAIERHT-----GARGLRSIMEGILLDTMFELPGLEGVEQVVIGPEVV 399 >gi|295689636|ref|YP_003593329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caulobacter segnis ATCC 21756] gi|295431539|gb|ADG10711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caulobacter segnis ATCC 21756] Length = 420 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +A+A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPREICEVLDDYVIGQGHAKKVLAVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V+ P + L Sbjct: 238 DTTNILFICGGAFAGLEKIISARGAAKSIGFGAKVTDPEERRTGEILRNVEPDDLQRFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ ILT+ ++ + QY+ L + E I L FT+D++ +A Sbjct: 298 IPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTDDALHQVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME +L + F Sbjct: 358 KAIARKT-----GARGLRSIMEGILLETMF 382 >gi|319405543|emb|CBI79162.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella sp. AR 15-3] Length = 424 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 300 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++MER+L D F Sbjct: 360 KAIERKT-----GARGLRSIMERILLDTMF 384 >gi|226939793|ref|YP_002794866.1| ClpX [Laribacter hongkongensis HLHK9] gi|226714719|gb|ACO73857.1| ClpX [Laribacter hongkongensis HLHK9] Length = 422 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 SPREI LD+Y+IGQ+ AK+A+++A+ N ++R +D ++E L NILL+GPTG G Sbjct: 67 SPREIREALDQYVIGQEQAKKALSVAVYNHYKRLNAKSDDKNEVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LAR+ PF + T TE GYVG +VE II L+ Sbjct: 127 KTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVESIITKLL 168 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ + + ++ + Sbjct: 181 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKNPNAEFIQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKIIRQRTEKGGIGFGAEVASKNDQKAVGELLRDTEPEDLIKFG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ ILT+ ++ L QY++L + EG+ LD ++ A+A Sbjct: 301 LIPEFIGRLPVVALLEPLDEEALMTILTEPKNALAKQYRKLFEMEGVELDLKPSALLAIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++ER L D + L+ TVV+D + + Sbjct: 361 KQALARRT-----GARGLRSIVERALLDTMYELPSLENVATVVVDEKVI 404 >gi|302345890|ref|YP_003814243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella melaninogenica ATCC 25845] gi|302150179|gb|ADK96441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella melaninogenica ATCC 25845] Length = 412 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +A+A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 64 PKEIKQYLDEYIIGQDEAKRYLAVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF +V++ P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHTVGYNSVQNVAKIDKNDLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L K +GI L FTE ++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIELTFTEAALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 V +GAR L++++E V+ D F + K+ + EYVR + Sbjct: 356 GVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400 >gi|269213481|ref|ZP_06157997.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria cinerea ATCC 14685] gi|269146222|gb|EEZ72640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria cinerea ATCC 14685] Length = 394 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 46 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGCNVELSKSNILLIGPTGSGK 105 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 146 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 159 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 218 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 219 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 278 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 279 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 338 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++ER L D + DL+ V+ E V Sbjct: 339 SQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVVGEAV 381 >gi|312131372|ref|YP_003998712.1| ATP-dependent clp protease ATP-binding subunit clpx [Leadbetterella byssophila DSM 17132] gi|311907918|gb|ADQ18359.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leadbetterella byssophila DSM 17132] Length = 421 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EGS V + + Sbjct: 182 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVGVPPQGGRKHPDQQLVQV 241 Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312 NT++ILFI GAF H+++ + L Sbjct: 242 NTENILFICGGAFDGIARHIAKRINTSPIGFRQEGKGVNLQSDESLMRYVTQQDLKSFGL 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ +L L++S + ILT+ ++ L+ QYK+L + E I L+F E ++D + D Sbjct: 302 IPELIGRLPLLTYLNPLDRSTLKRILTEPQNALVKQYKKLFQMENISLEFEEAALDYIVD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 AV N +GAR L+++ E +L D F SD K ++ +Y + Sbjct: 362 QAVKFN-----LGARGLRSICESILTDAMFELPSDKSIKEFLVTLDYAK 405 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67 P+E+ LDR+IIGQ +AK+ + +A+ N ++R P+ D + K NI++VG TG GKT Sbjct: 70 PQELKKYLDRFIIGQDEAKKVLTVAVYNHYKRLMQPSTGDDVNIEKSNIIMVGETGTGKT 129 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A++ PF + T TE GYVG ++E I+ L+ A V +++R Sbjct: 130 YLARTIAKMLEVPFAIADATVLTEAGYVGEDIESILTRLLQAADYNVEQAQR 181 >gi|255066288|ref|ZP_05318143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sicca ATCC 29256] gi|255049498|gb|EET44962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sicca ATCC 29256] Length = 422 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ EL NILL+GPTG GK Sbjct: 65 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 125 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 165 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 58/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 298 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELEFEEEALRSIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++ER L D + DL+ T V+ Sbjct: 358 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLKGVTKVV 395 >gi|74317694|ref|YP_315434.1| ATP-dependent protease ATP-binding subunit ClpX [Thiobacillus denitrificans ATCC 25259] gi|123772958|sp|Q3SI99|CLPX_THIDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|74057189|gb|AAZ97629.1| ClpX, ATPase regulatory subunit [Thiobacillus denitrificans ATCC 25259] Length = 423 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ AK+A+A+A+ N ++R + + D EL NILL+GPTG GK Sbjct: 65 TPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 125 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 165 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H P DL+ Sbjct: 238 DTSNILFICGGAFSGLEKVIRGRTEKGGIGFGAQVKNVDENKRDAELLHQVEPEDLIKYG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+++ ILT+ ++ L Q+ +L K EG+ L+F +D+++A+A Sbjct: 298 LIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ L T GAR L++++E L D + L+ VV+D Sbjct: 358 KRAL-LRRT----GARGLRSIIEHALLDTMYDLPSLKGVSKVVVD 397 >gi|119503320|ref|ZP_01625404.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2080] gi|119460966|gb|EAW42057.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2080] Length = 426 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI + LD+Y+IGQQ AKR +A+A+ N ++R + D R EL NILLVGPTG Sbjct: 66 PFEINAILDQYVIGQQRAKRVLAVAVYNHYKRLRYTPDTRSGDDVELSKSNILLVGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAETLARLLDVPFTVADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH---------------------------------VS--RPADL---- 312 +T +ILFI GAF +S P DL Sbjct: 241 DTSNILFICGGAFAGLDKIIRNRSEKGGIGFTAEVKSKDETRRFGEMISDLEPEDLVQYG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+ ILT+ + L QY ++ EG+ +DF ED + A+A Sbjct: 301 LIPEFVGRLPVIATLEELDIEALVRILTEPRNALTKQYAKMFDMEGVEIDFREDGLRAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ + GAR L++++E VL + ++ Q +V+D ++ Sbjct: 361 ERAMERKT-----GARGLRSILENVLLESMYNVPSQQNVAKIVVDESVIQ 405 >gi|146277489|ref|YP_001167648.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides ATCC 17025] gi|166215195|sp|A4WSH9|CLPX_RHOS5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145555730|gb|ABP70343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter sphaeroides ATCC 17025] Length = 421 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKNDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFHV------------------------SR----------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDSRGVGELFTELEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L D F L Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386 >gi|94264492|ref|ZP_01288279.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] gi|93455051|gb|EAT05278.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] Length = 419 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 3/109 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63 P EI LD Y++GQ+ AKR++A+A+ N ++R + A D RD EL NILL+GPTG Sbjct: 63 LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 GKT +++ LAR+ PF + T TE GYVG +VE I+ +L+ A N Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADN 171 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ S +Y + Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKL 238 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313 +T +I+FI GAF V R DLL Sbjct: 239 DTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGETLVQIASEDLLSFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV + L + D IL + ++ L QY++L + I L FTE ++ A+A Sbjct: 299 IPELVGRLPVLSTMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTEGALSAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++VMER + ++ + Sbjct: 359 EAIKRKA-----GARGLRSVMERAMLEVMY 383 >gi|77463764|ref|YP_353268.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodobacter sphaeroides 2.4.1] gi|123591634|sp|Q3J1G7|CLPX_RHOS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|77388182|gb|ABA79367.1| ATP-dependent protease Clp, ATPase subunit [Rhodobacter sphaeroides 2.4.1] Length = 421 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERVQR 176 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 97/215 (45%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF--------------------HVSRP-------------------ADL 312 +T +ILFI GAF V P L Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGAEVKDPDARGVGELFKELEPEDLPKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L+++ ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L D F L Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGL 386 >gi|325142574|gb|EGC64970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis 961-5945] Length = 341 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 53/162 (32%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPAD----- 311 +T +ILFI GAF + P D Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 L+PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALF 340 >gi|319892720|ref|YP_004149595.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus pseudintermedius HKU10-03] gi|317162416|gb|ADV05959.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus pseudintermedius HKU10-03] gi|323464246|gb|ADX76399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus pseudintermedius ED99] Length = 420 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R QQL P D EL N+ L+GPTG G Sbjct: 63 TPKEIMDQLNSYVIGQEKAKKSLAVAVYNHYKRVQQLGPKDDDVELQKSNVALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 167 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGINEVIKRRLGEKVIGFASNEASNFDEASLLEQIRPEDLQTYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY ++++ + + L+FT++++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDDVALEFTDEALAAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|270156950|ref|ZP_06185607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae D-4968] gi|289164626|ref|YP_003454764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae NSW150] gi|269988975|gb|EEZ95229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae D-4968] gi|288857799|emb|CBJ11643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Legionella longbeachae NSW150] Length = 424 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 66/100 (66%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SP+EI LD Y+IGQ AK+ +++A+ N ++R Q ++ EL NILL+GPTG GKT Sbjct: 65 SPQEISGFLDEYVIGQAHAKKVLSVAVYNHYKRLQHKSEDGVELGKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 125 LLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKLL 164 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 59/220 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G Sbjct: 175 QHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFL 234 Query: 290 SINTDHILFIASGAF------------------------------HVSRPAD-------- 311 ++T +ILFI GAF +S+ + Sbjct: 235 QVDTSNILFICGGAFAGLEKVIRERSDKSGIGFSAQLKNKKDTNDEISKVLNQLESDDLI 294 Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 L+PE GR PV L+ L++S ILT+ ++ L Q++ L K E + L+F ++++ Sbjct: 295 KYGLIPEFVGRLPVVTTLQELDQSALIDILTNPKNALTKQFQSLFKMEDVELEFRDEALV 354 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+A A+ +GAR L+ ++E +L D + L+ Sbjct: 355 AIAKKALERK-----MGARGLRAILENILLDTMYELPSLE 389 >gi|323136624|ref|ZP_08071705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis sp. ATCC 49242] gi|322397941|gb|EFY00462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocystis sp. ATCC 49242] Length = 422 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTGVGK Sbjct: 65 TPREICKVLDDYVIGQAQAKRVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGVGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TMLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFGATVQAPDDRRTGDIFRQVQPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + ILT+ ++ L+ QY+ L + E + L F +D++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEDALKKILTEPKNALVKQYQRLFEMENVELTFQDDALSAVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ ++ GAR L+++ME +L D F L+ + VVI E V Sbjct: 358 KAIERHT-----GARGLRSIMEGILLDTMFDLPGLEGVEQVVIGPEVV 400 >gi|291548433|emb|CBL21541.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus sp. SR1/5] Length = 437 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI S LD Y+IGQ DAK+A+++A+ N ++R +L EL NIL++GPTG GK Sbjct: 66 LKPEEIHSILDEYVIGQDDAKKALSVAVYNHYKRILASRNLDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 177 QYGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236 Query: 290 SINTDHILFIASGAF--------------------HVSRPAD------------------ 311 I+T +ILFI GAF VS D Sbjct: 237 QIDTTNILFICGGAFDGLEKIIEARQDTKSIGFGAEVSEKEDRNVGEVLKEVMPEDFIKF 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV V L SL++ IL + +++L QY +L + +G+ L+F +++++ + Sbjct: 297 GLIPEFIGRVPVVVTLDSLDEEALIRILKEPKNSLTKQYDKLFELDGVQLEFQDEALETV 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419 A ++ + GAR L+ +ME L D+ + + SD + ++ E V Sbjct: 357 ARKSLERKT-----GARGLRAIMEHTLMDLMYKTPSDDTIRKCIVTKEAV 401 >gi|94266600|ref|ZP_01290282.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] gi|93452771|gb|EAT03309.1| ClpX, ATPase regulatory subunit [delta proteobacterium MLMS-1] Length = 419 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 70/109 (64%), Gaps = 3/109 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63 P EI LD Y++GQ+ AKR++A+A+ N ++R + A D RD EL NILL+GPTG Sbjct: 63 LKPMEIKELLDEYVVGQERAKRSLAVAVHNHYKRVEGEAGEDFRDVELQKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 GKT +++ LAR+ PF + T TE GYVG +VE I+ +L+ A N Sbjct: 123 SGKTLLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVNLMQAADN 171 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ S +Y + Sbjct: 179 GIVYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEYVKL 238 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313 +T +I+FI GAF V R DLL Sbjct: 239 DTSNIMFICGGAFVGLEQVIRQRVGAKSLGFGANVQGKSKKKVGEILVQIASEDLLSFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV + L + D IL + ++ L QY++L + I L FTE ++ A+A Sbjct: 299 IPELVGRLPVLATMDELEEEDLVQILREPKNALTKQYEKLFAFDDIRLRFTEGALSAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++VMER + ++ + Sbjct: 359 EAIKRKA-----GARGLRSVMERAMLEVMY 383 >gi|270339923|ref|ZP_06006468.2| ATP-dependent Clp protease ATP-binding subunit [Prevotella bergensis DSM 17361] gi|270333281|gb|EFA44067.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella bergensis DSM 17361] Length = 418 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD YIIGQ +AKR +A+++ N ++R Q P D E+ NI++VG TG GKT Sbjct: 71 PKEIKAYLDEYIIGQDEAKRYMAVSVYNHYKRLQQPTDEDGVEIEKSNIIMVGSTGTGKT 130 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 131 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 173 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 183 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQDYIHV 242 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 243 NTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNMRSIDKGDLMKYILPQDLKSFGLI 302 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV L L++ R IL + ++++ Q+ +L + I L F +D++D + D Sbjct: 303 PELIGRVPVLTFLNPLDRKALRRILVEPKNSITKQFVKLFAMDNITLTFADDALDFIVDK 362 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D + A + + + +Y + + Sbjct: 363 AVEYK-----LGARGLRSIVEAVIMDAMYDAPSRRIRKFEVTLDYAKAQL 407 >gi|282878162|ref|ZP_06286959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella buccalis ATCC 35310] gi|281299740|gb|EFA92112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella buccalis ATCC 35310] Length = 415 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKT 67 P+EI + LD YIIGQ DAKR +++A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 68 PQEIKAYLDEYIIGQDDAKRYLSVAVYNHYKRLQQPKNDDGVEIEKSNIIMVGSTGTGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +ARL PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 128 LLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 170 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYTHV 239 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 240 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRNINKGDLMQYILPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L + +GI L F ED++D + D Sbjct: 300 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFEMDGIKLTFNEDALDYIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ D F K+ + +Y + Sbjct: 360 AVEYK-----LGARGLRSIVESVMMDAMFEIPSKHVKSFKVTLKYTQ 401 >gi|285017389|ref|YP_003375100.1| ATP-dependent clp protease ATP-binding subunit protein [Xanthomonas albilineans GPE PC73] gi|283472607|emb|CBA15112.1| probable atp-dependent clp protease atp-binding subunit protein [Xanthomonas albilineans] Length = 428 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQQ AKR +A+A+ N ++R + + EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 59/234 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238 Query: 290 SINTDHILFIASGAF------------------------HVSR------------PADLL 313 ++T +ILFI GAF V R P DL+ Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSVERKREVGKILAEVEPEDLI 298 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L+ L++ ILT+ ++ + Q+K+L + EG+ L+F +D++ Sbjct: 299 KFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMEGVELEFRQDALL 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 359 AIAKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|258516486|ref|YP_003192708.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum acetoxidans DSM 771] gi|257780191|gb|ACV64085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfotomaculum acetoxidans DSM 771] Length = 416 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 61 PKEIKEILDQYVIGQESAKKALAVAVYNHYKRINLGGKIDDVELQKSNIVMLGPTGSGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232 Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313 +T ++LFI GAF R P DLL Sbjct: 233 DTTNVLFICGGAFDGIDKIIQNRTGKKSMGFGAEIKAMREQRIGEILSNILPEDLLKYGL 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT+ + LI QY++L + +G+ ++F D++ +A Sbjct: 293 IPEFVGRLPVIVTLDMLDEDALVRILTEPRNALIKQYEKLFELDGVAIEFQADALKCIAK 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E V+ +I + Sbjct: 353 EALRRNT-----GARGLRAILEDVMLNIMY 377 >gi|297621813|ref|YP_003709950.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia chondrophila WSU 86-1044] gi|297377114|gb|ADI38944.1| ATP-dependent Clp protease ATP-binding subunit clpX [Waddlia chondrophila WSU 86-1044] Length = 415 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 P+EI +LD YIIGQ+ AKRA+++A+ N ++R Q L + E N+LL GPTG G Sbjct: 60 LKPKEIKEKLDEYIIGQEKAKRAISVAVYNHYKRVQSLGKESDIEFNKSNVLLFGPTGSG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA + PF + T TE GYVG +VE II LV A Sbjct: 120 KTLIAKTLAHILDVPFTIADATTLTEAGYVGEDVENIILRLVQAA 164 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI S I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKINRTTSNVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233 Query: 292 NTDHILFIASGAF----------------------------HVS-------RPADLL--- 313 NT++ILFI GAF H P DL+ Sbjct: 234 NTENILFIIGGAFVNLDQIVAKRLGRSTIGFSSQEGKSIDPHQKSQLLSQVEPEDLIQSG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GRF + L D LILT+ ++ +I QY + + E + L FT++++ +A Sbjct: 294 MIPEFVGRFHTIANCNELTVDDLVLILTEPKNAVIKQYISMFEMEDVKLSFTDEALQEVA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E + D+ F SD + ++ID E + Sbjct: 354 KKAIEAGT-----GARALRMILENAMRDLMFEVPSDKTIQEIIIDKETI 397 >gi|325130451|gb|EGC53212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis OX99.30304] Length = 414 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|298369174|ref|ZP_06980492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp. oral taxon 014 str. F0314] gi|298283177|gb|EFI24664.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria sp. oral taxon 014 str. F0314] Length = 424 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A+ EL NILL+GPTG GK Sbjct: 64 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKANGNVELSKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 124 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 164 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 58/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 237 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITGLFEIVEPEDLIKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 297 LIPELIGRLPVIATLAELDEDALVNILTEPKNALVKQYQTLFGMENVELEFEEEALRSIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++ER L D + DL+ Sbjct: 357 RQAMERKT-----GARGLRSIVERCLLDTMYQLPDLK 388 >gi|308389490|gb|ADO31810.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis alpha710] Length = 414 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALSSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|327542676|gb|EGF29147.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula baltica WH47] Length = 427 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 11/213 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 SPR IV LD Y+IGQ AKR +A+A+ N ++R AD + E+ NILL GPTG Sbjct: 75 SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 134 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119 GKT ++R LAR+ PF + T TE GYVG +VE ++ L+ A V ++R Sbjct: 135 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 194 Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178 DEV + S N I + G+ + ++ + + E D SN Sbjct: 195 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 254 Query: 179 FDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209 I GG VGI + L + +G G +R Sbjct: 255 LFICGGTFVGIEEIIRRRLGHRTLGFGEGANVR 287 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 60/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 190 GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQL 249 Query: 292 NTDHILFIASGAF-------------------------HVSRPADL-------------- 312 +T +ILFI G F + P +L Sbjct: 250 DTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTPGELVAQVQTEDILKFGL 309 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV +L+ L+ +LT+ +++L+ QY+ L E L+FTE+++ A+A Sbjct: 310 IPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVKQYQALFAMENCELEFTEEALHAIAK 369 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 AV+ +GAR L+ +ME V+ DI + DL E+ Sbjct: 370 KAVDKG-----VGARGLRGIMEDVMLDIMY---DLPEQ 399 >gi|261392354|emb|CAX49892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria meningitidis 8013] Length = 414 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRRRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|260426453|ref|ZP_05780432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella sp. SE45] gi|260420945|gb|EEX14196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citreicella sp. SE45] Length = 421 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 SPREI LD Y+IGQ AKR +++A+ N ++R Q +D+ EL NILL+GPTG Sbjct: 65 SPREICDVLDDYVIGQMMAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVREPDERGTGEVFKDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTELSFTDDALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F + + T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEGILLDTMFELPGMDDVTEVVVNEEAV 400 >gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas sp. AL212] gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas sp. AL212] Length = 425 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLP-ADLRD--ELMPKNILLVGPTGV 64 PREI LD+Y+IGQ+ AK+ +++A+ N ++R + +P +D D EL NILLVGPTG Sbjct: 66 PREICQILDQYVIGQESAKKILSVAVYNHYKRLRNIPRSDETDDIELSKSNILLVGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PFI + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAQTLARLLDVPFIMADATALTEAGYVGEDVENIIQKLL 168 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAMVPPQGGRKHPNQEFIQV 240 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADL----- 312 +T +ILFI GAF H + P DL Sbjct: 241 DTTNILFICGGAFDGLDRVIRARTEKGGIGFGVEVKSHSGKDVNKVLQQVEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII-LDFTEDSIDALA 371 +PE GR PV L+ LN++ ILT+ ++ L+ QY ++ EG + L+F E ++ A+A Sbjct: 301 IPEFVGRLPVVATLEELNEAALIQILTEPKNALVKQYWKMFNMEGGVDLEFREPALKAIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415 A+ + GAR L++++E +L DI + L+ T VVID Sbjct: 361 KKALTRKT-----GARGLRSILEEILLDIMYDLPSLENVTKVVID 400 >gi|126732555|ref|ZP_01748353.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] gi|126707001|gb|EBA06069.1| ATP-dependent protease ATP-binding subunit [Sagittula stellata E-37] Length = 421 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +PREI LD Y+IGQ AKR +++A+ N ++R Q +D+ EL NILL+GPTG Sbjct: 65 TPREICEVLDDYVIGQMKAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDDRGVGEIFRDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVVATLEDLDEDALVTILTQPKNALVKQYQRLFEMEDTDLTFTDDALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 358 KAIQRKT-----GARGLRSILEGILLDTMF 382 >gi|304387303|ref|ZP_07369496.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis ATCC 13091] gi|304338686|gb|EFM04803.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis ATCC 13091] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|163784517|ref|ZP_02179381.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880218|gb|EDP73858.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 104 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 72/104 (69%) Query: 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 F ILT ++ LI QYK LM+TEG+ L+FT+D+++ +A +A +N +IGARRL T++ Sbjct: 1 FIKILTQPKNALIKQYKALMETEGVHLEFTDDAVEEIARIAEEVNEKTENIGARRLHTIL 60 Query: 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ER++ED SF A DL+ +T++ID + V+ +GD D+ +IL Sbjct: 61 ERIMEDYSFEAPDLKGQTIIIDKKVVQAKLGDIVQNEDLTKYIL 104 >gi|319410635|emb|CBY91004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Neisseria meningitidis WUE 2594] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|157363410|ref|YP_001470177.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga lettingae TMO] gi|157314014|gb|ABV33113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga lettingae TMO] Length = 404 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI +ELD+Y+IGQ+ AKR +++A+ N ++R +D D E+ NI+L+GPTG GKT Sbjct: 56 PAEIKAELDKYVIGQEKAKRVISVAVYNHYKRVFYESDNDDVEIEKSNIMLIGPTGSGKT 115 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I+R LA++ PF + T TE GYVG +VE +I L++VA Sbjct: 116 LIARVLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEVA 158 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 103/226 (45%), Gaps = 61/226 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGIV++DE DKI + I VS EGVQ+ LL +VEG+ + ++ Sbjct: 166 QYGIVYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPYQEFI 225 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFI GAF HV P DL Sbjct: 226 KVDTSNILFIVGGAFDGLEEIVKRRIQDSSMGFGADIKSKKRMRLGEILSHVV-PDDLVQ 284 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L L + D IL + ++ ++ QYK+L + + I L+ T+D++ A Sbjct: 285 YGMIPEFVGRFPVIATLDDLTEEDLVRILNEPKNAIVKQYKKLFQLDNIELEITKDALYA 344 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 +A A+ + GAR L+ V E V+ D+ F + EK VV Sbjct: 345 IARKALTKGT-----GARALKGVFEEVMIDVMFEIPSTKNVEKVVV 385 >gi|121611286|ref|YP_999093.1| ATP-dependent protease ATP-binding subunit ClpX [Verminephrobacter eiseniae EF01-2] gi|121555926|gb|ABM60075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Verminephrobacter eiseniae EF01-2] Length = 447 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ++AKR +A+A+ N ++R + R EL NILL+GPTG Sbjct: 93 TPAEIKNNLDNYVIGQEEAKRTLAVAVYNHYKRLRYKEKARKNDVELSKSNILLIGPTGS 152 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V ++R Sbjct: 153 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCGYKVEPAQR 207 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ VS + I Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMVSVPPQGGRKHPNQDFLQI 267 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T ILFI GAF P DL+ Sbjct: 268 DTSDILFICGGAFAGLEKVIENRTEASGIGFGASVKSKKQRSLTDVFAEVEPEDLIKFGL 327 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ + LI QY +L+ EG+ L+ ++ ++A Sbjct: 328 IPELVGRMPVVTALAELSEQALIQILTEPRNALIKQYGKLLAMEGVNLEIRPAAMQSIAR 387 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E+ L F + + VVID Sbjct: 388 KALARKT-----GARGLRSILEQSLIGTMFDLPNTSNVERVVID 426 >gi|15677237|ref|NP_274390.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis MC58] gi|21263485|sp|Q9JYY3|CLPX_NEIMB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|7226618|gb|AAF41746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis MC58] gi|316984186|gb|EFV63164.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis H44/76] gi|325134392|gb|EGC57037.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M13399] gi|325140408|gb|EGC62929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis CU385] gi|325200007|gb|ADY95462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis H44/76] gi|325201919|gb|ADY97373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240149] gi|325205861|gb|ADZ01314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M04-240196] gi|325208330|gb|ADZ03782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis NZ-05/33] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|309378864|emb|CBX22569.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|326561828|gb|EGE12163.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 7169] gi|326563374|gb|EGE13639.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 12P80B1] gi|326571925|gb|EGE21930.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis BC8] Length = 438 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ A Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|296112318|ref|YP_003626256.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella catarrhalis RH4] gi|295920012|gb|ADG60363.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moraxella catarrhalis RH4] Length = 438 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ A Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|255284022|ref|ZP_05348577.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella formatexigens DSM 14469] gi|255265475|gb|EET58680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella formatexigens DSM 14469] Length = 432 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+A+A+A+ N ++R DL EL NIL++GPTG GK Sbjct: 65 LKPEEIKAVLDDYVIGQDNAKKALAVAVYNHYKRILAGKDLGVELQKSNILMLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TYLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 57/213 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 QHGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELI 235 Query: 290 SINTDHILFIASGAF----------------------------HVSR------PAD---- 311 I+T ILFI GAF +V P D Sbjct: 236 QIDTTDILFICGGAFEGIDKIIETRMNTKTIGFGRTLSDKAQKNVGEVLKEVVPQDFVKY 295 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR PV V L +L++ IL + ++++I QYK+L + +G+ LDF +D++DA+ Sbjct: 296 GMIPEFIGRVPVVVSLDALDEEALVRILKEPKNSIIKQYKKLFELDGVKLDFEDDAVDAI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A +++ + GAR L+ VMER ++++ ++ Sbjct: 356 AKLSMERKT-----GARGLRAVMERSMQELMYT 383 >gi|71900577|ref|ZP_00682704.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1] gi|71729634|gb|EAO31738.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Ann-1] Length = 426 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI+ LD+Y+IGQQ AKR +A+A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238 Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313 ++T +ILFI GAF V + P DL+ Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L++S ILT+ ++ + Q+K+L + E + L+F +D++ Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ + GAR L+T++E VL D + Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387 >gi|325136470|gb|EGC59076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M0579] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADVTKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|325109337|ref|YP_004270405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces brasiliensis DSM 5305] gi|324969605|gb|ADY60383.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces brasiliensis DSM 5305] Length = 426 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +PREIV+ LD Y+IGQ+ AKR +++A+ N ++R L AD D E+ NILL+GPTG G Sbjct: 75 TPREIVAHLDEYVIGQERAKRVMSVAVHNHYKRLMNLEADESDVEIEKSNILLLGPTGSG 134 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ +ARL PF + T TE GYVG +VE ++ L+ A Sbjct: 135 KTLLAKTMARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 64/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+F+DE DKI I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 189 GIIFIDEIDKIGKTSQNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQI 248 Query: 292 NTDHILFIASGAFH-------------------VSRPA--------------------DL 312 +T +ILFI G F VS+ L Sbjct: 249 DTTNILFICGGTFVGLEDIVSKRLGKKSIGFNVVSQEKRDRQRSELLAQAEVDDVLEFGL 308 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ L L + D IL + +++++ Q+++L + E L+FT +++ +A Sbjct: 309 IPELLGRLPLLSTLSPLAEEDLVRILVEPKNSIVRQFQKLFEMEDASLEFTPEALLEVAR 368 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV----VIDAEYVR 420 A + D GAR L+ +E V+ D+ + DL +K V V+ AE VR Sbjct: 369 AA-----SKRDTGARSLRAALETVIFDVLY---DLPDKGVGKKFVVTAEMVR 412 >gi|326568951|gb|EGE19020.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis BC1] Length = 438 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ A Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|71907347|ref|YP_284934.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica RCB] gi|123774411|sp|Q47FB7|CLPX_DECAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71846968|gb|AAZ46464.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB] Length = 420 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PREI S LD+Y+IGQ+ AKR +++A+ N ++R + A EL NILL+GPTG G Sbjct: 63 TPREISSILDQYVIGQEVAKRILSVAVYNHYKRLRHTAKNAGDVELSKSNILLIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 123 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 164 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 62/237 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S + + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTASIPPQGGRKHPNQDFVQV 236 Query: 292 NTDHILFIASGAFHV-----------------------------------SRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 237 DTTNILFICGGAFAGLEKVIQSRSERGGIGFGAEVKSKDDGKAVGKILLDAEPEDLIKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L +S ILT+ ++ L+ QY++L E + L+ ++ A+A Sbjct: 297 LIPELIGRLPVVATLQELEESALVQILTEPKNALVKQYQKLFSMEDVELEIRPTALSAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L++++E L D + ++ + VVID + GD P Sbjct: 357 KKALARKT-----GARGLRSILEHALLDTMYELPGMESVEKVVIDENTI---TGDTP 405 >gi|28198387|ref|NP_778701.1| ATP-dependent protease ATP-binding subunit [Xylella fastidiosa Temecula1] gi|182681029|ref|YP_001829189.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa M23] gi|32129455|sp|Q87E50|CLPX_XYLFT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238691092|sp|B2I8K4|CLPX_XYLF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28056457|gb|AAO28350.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella fastidiosa Temecula1] gi|182631139|gb|ACB91915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylella fastidiosa M23] gi|307579497|gb|ADN63466.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa subsp. fastidiosa GB514] Length = 426 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI+ LD+Y+IGQQ AKR +A+A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238 Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313 ++T +ILFI GAF V + P DL+ Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L++S ILT+ ++ + Q+K+L + E + L+F +D++ Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ + GAR L+T++E VL D + Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387 >gi|326569250|gb|EGE19311.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis BC7] Length = 438 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ A Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 194 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVLASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|161870243|ref|YP_001599413.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria meningitidis 053442] gi|189044141|sp|A9M020|CLPX_NEIM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161595796|gb|ABX73456.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis 053442] Length = 414 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|319404100|emb|CBI77690.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella rochalimae ATCC BAA-1498] Length = 398 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 41 TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSSDVELAKSNILLVGPTGCGK 100 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 154 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 213 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 214 DTTNILFICGGAFAGLEKIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 273 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 274 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVQLVFHEDALRVIAK 333 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++MER+L + F L Sbjct: 334 KAIERKT-----GARGLRSIMERILLNTMFELPAL 363 >gi|319898777|ref|YP_004158870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella clarridgeiae 73] gi|319402741|emb|CBI76288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella clarridgeiae 73] Length = 398 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 41 TPQEILTVLDDYVIGQRHAKRVLSVAVHNHYKRLAHQSKSNDVELAKSNILLVGPTGCGK 100 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 101 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 154 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 213 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P + L Sbjct: 214 DTTNILFICGGAFAGLERIISGRGEKTSIGFSAAVKAPDERRVGEIFRDLEPEDLIKFGL 273 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ IL+ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 274 IPEFIGRLPVIATLEDLDICALVQILSQPKNALVKQYQRLFEMENVHLVFHEDALRVIAK 333 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++MER+L D F L Sbjct: 334 KAIERKT-----GARGLRSIMERILLDTMFELPAL 363 >gi|290969193|ref|ZP_06560718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera genomosp. type_1 str. 28L] gi|290780699|gb|EFD93302.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera genomosp. type_1 str. 28L] Length = 410 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R Q D D EL N+++VGPTG GK Sbjct: 61 TPHEIKATLDEYVIGQEAAKKTLAVAVYNHYKRLQSNTDADDVELQKSNVVMVGPTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF + T TE GYVG +VE + L+ A + +++R Sbjct: 121 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENCLLKLIQAADYDIEKAQR 173 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 64/238 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V + G I Sbjct: 174 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVAGVPPQGGRKHPHQDMLQI 233 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF +S P DL Sbjct: 234 DTTNILFICGGAFDGIDKTIQKRISDKKMGFGADVQSKSKKALKTLLKDIIPVDLQKFGL 293 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV V L L++ ILT+ ++ L+ QY++++K + + L FT D++ +A Sbjct: 294 IPELIGRLPVLVTLDPLDEEAMVHILTEPKNALVKQYQKMLKMDDVELKFTSDALQEIAK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHI 423 A+ N+ GAR L++++ER++ D+ F S D+++ K+ V + + RL + Sbjct: 354 EALRRNT-----GARGLRSIIERIMLDVMFDVPSRKDVEKCIVNKSCVTEGKKPRLEL 406 >gi|325128438|gb|EGC51319.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis N1568] Length = 414 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 WQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|254805167|ref|YP_003083388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha14] gi|254668709|emb|CBA06486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha14] Length = 414 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRRRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|84686589|ref|ZP_01014482.1| ATP-dependent protease ATP-binding subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665502|gb|EAQ11979.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2654] Length = 423 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P+EI LD Y+IGQ AKR +++A+ N ++R A DE L NILL+GPTG G Sbjct: 66 TPQEICGVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKHGDEIELAKSNILLIGPTGCG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 126 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 179 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 240 DTTNILFICGGAFAGLDRIIAQRGKGSAIGFGADVKDEQARKIGEVFQELEPEDLLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A++ Sbjct: 300 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDAKLTFTDDALLAISK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+++ME +L D F L+ Sbjct: 360 KAIQRKT-----GARGLRSIMEDILLDTMFDLPALE 390 >gi|254670021|emb|CBA04788.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha153] Length = 376 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 53/149 (35%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPAD----- 311 +T +ILFI GAF + P D Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTD 340 L+PE+ GR PV L+ L++ ILT+ Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTE 327 >gi|71276512|ref|ZP_00652787.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon] gi|170729733|ref|YP_001775166.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa M12] gi|238687959|sp|B0U5N2|CLPX_XYLFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71162689|gb|EAO12416.1| ClpX, ATPase regulatory subunit [Xylella fastidiosa Dixon] gi|167964526|gb|ACA11536.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella fastidiosa M12] Length = 426 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI+ LD+Y+IGQQ AKR +A+A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238 Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313 ++T +ILFI GAF V + P DL+ Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L++S ILT+ ++ + Q+K+L + E + L+F +D++ Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ + GAR L+T++E VL D + Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387 >gi|312113124|ref|YP_004010720.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodomicrobium vannielii ATCC 17100] gi|311218253|gb|ADP69621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodomicrobium vannielii ATCC 17100] Length = 422 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD Y+IGQ AKR +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 66 TPQEICTVLDDYVIGQDYAKRVLSVAVHNHYKRINHSAKNNDVELAKSNILLIGPTGCGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVDRAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 239 DTTNILFICGGAFSGLEKIIAQRGKSSSIGFGAKVTSEDDRRTGEILRGVEPEDLLRFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL++ ++ L+ QY+ L EG+ L + +++ ++A Sbjct: 299 IPEFIGRLPVLATLEDLDEVALVKILSEPKNALVKQYQRLFDMEGVQLTLSNEALKSVAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E + Sbjct: 359 KAIERKT-----GARGLRSIMEAILLDSMFELPSLKGVEEVVISPEVI 401 >gi|327312567|ref|YP_004328004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella denticola F0289] gi|326945451|gb|AEA21336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella denticola F0289] Length = 412 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF +V+R P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L +GI L FT+ ++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFSMDGITLSFTDPALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D F + K+ + EYVR + Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 64 PKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 >gi|254672175|emb|CBA05020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis alpha275] Length = 414 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|291298894|ref|YP_003510172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stackebrandtia nassauensis DSM 44728] gi|290568114|gb|ADD41079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stackebrandtia nassauensis DSM 44728] Length = 567 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60 P+EI LD Y++GQ+DAKRA+A+A+ N ++R Q+ PA EL NIL++G Sbjct: 64 PKEICEFLDEYVVGQEDAKRALAVAVYNHYKRVQVEAVAGKPRPASEPVELSKSNILMIG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 PTGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIVAA 173 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 59/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKAGRKSESRSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQI 242 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI G+F V R P DLL Sbjct: 243 DTTNILFICGGSFSGLEEIVERRKGANGVGFTAKLRIRGEENPEDNLADAMPEDLLEFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ ++ L++ ILT+ + LI QY+ L++ +G+ L F +D+++ + D Sbjct: 303 IPEFIGRVPIMTAVRQLDREALIKILTEPRNALIKQYQRLLELDGVELVFEDDALEPIVD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVRLHI 423 +A+ L T GAR L+ +ME VL+ + + +K VVI + VR ++ Sbjct: 363 LAL-LRGT----GARGLRAIMEEVLQPVMYEIPSHADKVARVVITGDVVRKNV 410 >gi|319789634|ref|YP_004151267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio ammonificans HB-1] gi|317114136|gb|ADU96626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermovibrio ammonificans HB-1] Length = 410 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQQYIQI 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T +ILFI GAF P DL + Sbjct: 236 DTSNILFICGGAFVGLEDIIARRIGKGAMGFTADVDKKKMERDELLKYVEPDDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV LK L + D +LT+ ++ L+ QYK+L++ EG+ L FTE+++ +A Sbjct: 296 PELIGRLPVIATLKELKEEDLVRVLTEPKNALVKQYKKLLEMEGVELVFTEEALREIARE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+ +ME+++ D+ F ++ K V+IDAE V+ Sbjct: 356 AIRRKT-----GARGLRAIMEKLMTDVMFEVPTRKDIKKVIIDAEAVK 398 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ++AK+ +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 63 TPKEIKEFLDQYVIGQEEAKKVLSVAVYNHYKRIMSGGSVDDVELEKSNILLIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 166 >gi|325198516|gb|ADY93972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis G2136] Length = 414 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|171778305|ref|ZP_02919511.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283005|gb|EDT48429.1| hypothetical protein STRINF_00353 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 409 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ LD Y++GQ+ AKRA+A+A+ N ++R A+ RDE L NILL+GPTG Sbjct: 64 PKELLATLDEYVVGQERAKRALAVAVYNHYKRVSF-AESRDEEDVELQKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 NT +ILFI GAF +R D L+P Sbjct: 238 NTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDEDASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F ED++ A+A+ A Sbjct: 298 EFIGRLPVVAALEQLTTDDLVRILTEPRNALVKQYQTLLSYDGVELEFDEDALQAVANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F +E T V Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSREEVTKV 391 >gi|121635078|ref|YP_975323.1| ATP-dependent protease ATP-binding subunit [Neisseria meningitidis FAM18] gi|166214793|sp|A1KUJ4|CLPX_NEIMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120866784|emb|CAM10537.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis FAM18] gi|325132435|gb|EGC55128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M6190] gi|325138423|gb|EGC60991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis ES14902] gi|325143447|gb|EGC65773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria meningitidis M01-240013] Length = 414 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 397 >gi|24215258|ref|NP_712739.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans serovar Lai str. 56601] gi|45657294|ref|YP_001380.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|46576590|sp|Q8F353|CLPX_LEPIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|59797806|sp|Q72SG5|CLPX_LEPIC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24196348|gb|AAN49757.1| ATP-dependent protease ATP-binding subunit [Leptospira interrogans serovar Lai str. 56601] gi|45600532|gb|AAS70017.1| ATP-dependent protease [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 420 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 1/111 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP +I S LD+Y+IGQ AK+A+++A+ N ++R L D E+ NILL+GPTG GK Sbjct: 68 SPADIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LAR+ PF V+ T TE GYVG +VE II L+ A N ++++ Sbjct: 128 TLLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDIKKA 178 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 181 GIIYIDEVDKIARKSDSASITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEYLQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DL+ Sbjct: 241 DTKNILFILGGAFVDLPNIIKSRTGIKTIGFGSEEQRIQSENKDVLMEQVIPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ LN R I + +++++ QY L++ E + L F +++ID +A+ Sbjct: 301 IPEFIGRLPIVATLQELNVDMLRQIFREPKNSVLKQYTRLLELENVKLTFHDEAIDKIAE 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 +A+ S GAR L+ ++E ++ D+ F S D++E V+I AE + Sbjct: 361 LAIKRES-----GARGLRAIVENIMLDLMFDIPSRKDIEE--VIITAEVI 403 >gi|319787635|ref|YP_004147110.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudoxanthomonas suwonensis 11-1] gi|317466147|gb|ADV27879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudoxanthomonas suwonensis 11-1] Length = 429 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 5/102 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 PREI+ LD+Y+IGQQ AK+ +A+A+ N ++R +Q D+ EL NILLVGPTG G Sbjct: 69 PREILEVLDQYVIGQQRAKKTLAVAVYNHYKRIESRQRNEDV--ELAKSNILLVGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311 +T +ILFI GAF R +D Sbjct: 241 DTKNILFIVGGAFAGLDKIIQQRSSDAGGIGFGAKVKSSKVKADTGKLLAEVEPEDLIKF 300 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ ILT+ ++ + Q+++L + EG+ L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALVKILTEPKNAITKQFRKLFEMEGVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407 >gi|163759317|ref|ZP_02166403.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea phototrophica DFL-43] gi|162283721|gb|EDQ34006.1| ATP-dependent Clp protease, ATP-binding subunit protein [Hoeflea phototrophica DFL-43] Length = 426 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ AK+ +++A+ N ++R + + EL NILLVGPTG GK Sbjct: 68 TPQEIIATLDEYVIGQHQAKKILSVAVHNHYKRLNHSSKSGEVELAKSNILLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILF+ GAF P DL Sbjct: 241 DTTNILFVCGGAFAGLDKIISDRGEKTSIGFSASVRAQDERRVGEVLRALEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++S ILT+ ++ L+ QY+ L + E + L F E ++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDESALIQILTEPKNALVKQYQRLFEMEDVELTFHESALQEIAK 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L+++ME++L D F L+ + VVI E V Sbjct: 361 RGI-----IRATGARGLRSIMEKILLDTMFELPALEGVREVVISDEVV 403 >gi|198276173|ref|ZP_03208704.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135] gi|198270985|gb|EDY95255.1| hypothetical protein BACPLE_02362 [Bacteroides plebeius DSM 17135] Length = 393 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD+Y+IGQ DAKR +A+A+ N ++R P D D E+ NI++VG TG GKT Sbjct: 46 PKDIKEFLDQYVIGQDDAKRYLAVAVYNHYKRLLQPKDKNDVEIEKSNIIMVGSTGTGKT 105 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ R Sbjct: 106 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 157 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 158 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 217 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 218 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKEAVKIDRGNLMQYIAPQDLKSFGLI 277 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 278 PEIIGRLPVLTYLNPLDRMALRNILTEPKNSIIKQYVKLFEMDGVKLEFEPEVFEYIVDK 337 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D+ F Q + V+ +Y + +G Sbjct: 338 AIEYK-----LGARGLRSIVETIMNDVMFEIPSQQTERFVVTLDYAKQQMG 383 >gi|159043936|ref|YP_001532730.1| ATP-dependent protease ATP-binding subunit ClpX [Dinoroseobacter shibae DFL 12] gi|189044133|sp|A8LJA7|CLPX_DINSH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157911696|gb|ABV93129.1| ATP-dependent Clp protease [Dinoroseobacter shibae DFL 12] Length = 419 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI LD Y+IGQ AKR +++A+ N ++R EL NILL+GPTG GKT Sbjct: 64 TPQEICDVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAGKTDIELAKSNILLIGPTGCGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 175 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 235 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 236 DTTNILFICGGAFAGLEKIIAQRGKGSAIGFGADVKENDTRGVGEMFGELEPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L + E L FTED+++A+A Sbjct: 296 IPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDALNAIAG 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L++++E +L + F L Sbjct: 356 RAIERKT-----GARGLRSILEDILLNTMFDLPGL 385 >gi|320354137|ref|YP_004195476.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus propionicus DSM 2032] gi|320122639|gb|ADW18185.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfobulbus propionicus DSM 2032] Length = 422 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 2/115 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P+EI + LD+Y++GQ+ AKR +++A+ N ++R P D EL NI+L+GPTG Sbjct: 66 LKPKEIKAYLDQYVVGQEHAKRILSVAVHNHYKRISAPPADDDAVELQKSNIILIGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LARL PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 126 GKTLVAQTLARLLKVPFTIADATTLTEAGYVGEDVENILVSLLQAADYDIEKAQR 180 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 60/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + + VS EGVQ+ LL ++EG+ SV K G I Sbjct: 181 GIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTMASVPPKGGRKHPQQELVRI 240 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 +T +ILFI GAF VS+ P DLL Sbjct: 241 DTTNILFIVGGAFVGLDGVIKRRTGTQAMGFGAKVVSQKERSIGEVLASIQPEDLLKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV ++ L + D IL + ++ L QY++L + EG+ L FTE + A+A Sbjct: 301 IPELVGRLPVIATMEELVEEDLIRILKEPKNALSKQYQKLFEYEGVTLRFTEGAFKAIAQ 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGDFP 427 A+ S GAR L++VME + D+ + SD VI+ + + G++P Sbjct: 361 KALARKS-----GARGLRSVMEECMLDVMYELPSDEHATECVINEQVIT--NGEYP 409 >gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans lithotrophicus ES-1] gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans lithotrophicus ES-1] Length = 418 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 69/111 (62%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + EL NILLVGPTG GKT Sbjct: 68 PHEICARLDEYVIGQRQAKKILSVAVYNHYKRLKSTDADGVELAKSNILLVGPTGSGKTL 127 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LARL PF+ + T TE GYVG +VE II+ L+ V ++R Sbjct: 128 LAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYDVERAQR 178 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S T++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTKASIPPQGGRKHPNTEFLQV 238 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 239 DTSNILFICGGAFDGLEKVIRNRSEKAGIGFSANLAKRDESNDIGKVLRGVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ ILT+ ++ L QY++L EG+ L+F E ++ +A Sbjct: 299 LIPEFVGRLPVVATLEGLDEAALIQILTEPKNALTKQYQKLFSMEGVELEFREGVLNVIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E L D F Sbjct: 359 KKALERKT-----GARGLRSILENALLDTMF 384 >gi|260892393|ref|YP_003238490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex degensii KC4] gi|260864534|gb|ACX51640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ammonifex degensii KC4] Length = 420 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R L + D EL NIL++GPTG GK Sbjct: 63 TPKEIKEFLDQYVIGQEHAKKTLAVAVYNHYKRVHLGGKIDDVELQKSNILMLGPTGCGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ LV A Sbjct: 123 TLLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLVQAA 166 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 176 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313 +T +ILFI GAF +SR P DLL Sbjct: 236 DTTNILFICGGAFEGIEKIIQNRISRKSMGFGAELVVQREQDLGKILRQILPQDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L + D ILT+ + LI QY++L + +G+ L+F ++I A+A Sbjct: 296 IPEFVGRLPIIVTLDPLTEDDLVRILTEPRNALIRQYQKLFELDGVQLEFQPEAIRAIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 356 EALRRNT-----GARGLRAILEEIMLNVMY 380 >gi|223044104|ref|ZP_03614143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus capitis SK14] gi|314933829|ref|ZP_07841194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus caprae C87] gi|222442498|gb|EEE48604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus capitis SK14] gi|313653979|gb|EFS17736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus caprae C87] Length = 420 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P+D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSDDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|58038574|ref|YP_190538.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconobacter oxydans 621H] gi|81352673|sp|Q5FUR4|CLPX_GLUOX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|58000988|gb|AAW59882.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconobacter oxydans 621H] Length = 421 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ +AKRA+++A+ N ++R A D E+ NILL+GPTG GK Sbjct: 64 TPKEICKVLDDYVIGQFEAKRALSVAVHNHYKRLAHAAKSSDIEIAKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVDRAQR 176 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 97/216 (44%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313 +T ++LFI GAF V P DLL Sbjct: 237 DTTNMLFICGGAFAVWTRSFRRVARDRASASVQMCVLMTSVVLGAILQSVEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++S IL+ ++ LI QY L + EG+ L FTED++ A+A Sbjct: 297 IPEFIGRLPVIAALNDLDESALIQILSKPKNALIKQYGRLFEMEGVKLTFTEDALAAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++E +L F L+ Sbjct: 357 RAIERKT-----GARGLRSILESILLGTMFDLPGLE 387 >gi|326693800|ref|ZP_08230805.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc argentinum KCTC 3773] Length = 415 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV++L+ Y+IGQ+DAK+ +A+A+ N ++R + EL NI L+GPTG G Sbjct: 64 TPHEIVAQLNDYVIGQEDAKKTLAVAVYNHYKRINEHFAPTTDVELQKSNIALIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 65/239 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELIQV 237 Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313 +T +ILFI GAF H + +P DL+ Sbjct: 238 DTTNILFIVGGAFAGIDTIIKERLGERVIGFGSHANENAAALDDDNILKYVQPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L L SD ILT+ ++ LI QY+ L+ + + L+F D+++A+A Sbjct: 298 LIPEFIGRLPIVTVLDELTVSDLVRILTEPKNALIKQYQALLGLDDVALEFQPDALEAMA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHI 423 ++A+ ++ GAR L++++E V++D+ F S D+ + K V+D LH+ Sbjct: 358 ELAIKRHT-----GARGLRSIIEHVMKDVMFDIPSRDDVAKVVITKASVLDGAQPELHL 411 >gi|15837790|ref|NP_298478.1| ATP-dependent protease ATP-binding subunit ClpX [Xylella fastidiosa 9a5c] gi|21263488|sp|Q9PE40|CLPX_XYLFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|9106158|gb|AAF83998.1|AE003953_2 ATP-dependent Clp protease ATP binding subunit Clpx [Xylella fastidiosa 9a5c] Length = 426 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI+ LD+Y+IGQQ AKR +A+A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 PKEILEVLDQYVIGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 179 QHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFL 238 Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313 ++T +ILFI GAF V + P DL+ Sbjct: 239 QVDTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLI 298 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L++S ILT+ ++ + Q+K+L + E + L+F +D++ Sbjct: 299 KFGLIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALS 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ + GAR L+T++E VL D + Sbjct: 359 AVARKALKRKT-----GARGLRTIVELVLLDTMY 387 >gi|32476155|ref|NP_869149.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopirellula baltica SH 1] gi|46576445|sp|Q7UKU7|CLPX_RHOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|32446699|emb|CAD76535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Rhodopirellula baltica SH 1] Length = 466 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 11/213 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 SPR IV LD Y+IGQ AKR +A+A+ N ++R AD + E+ NILL GPTG Sbjct: 114 SPRSIVEHLDNYVIGQGSAKRVLAVAVHNHYKRLSNGADGSNGEVEIEKSNILLAGPTGS 173 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR----- 119 GKT ++R LAR+ PF + T TE GYVG +VE ++ L+ A V ++R Sbjct: 174 GKTLLARSLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAADFDVEAAQRGILYI 233 Query: 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN- 178 DEV + S N I + G+ + ++ + + E D SN Sbjct: 234 DEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQLDTSNI 293 Query: 179 FDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209 I GG VGI + L + +G G +R Sbjct: 294 LFICGGTFVGIEEIIRRRLGHRTLGFGEGANVR 326 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 60/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 229 GILYIDEVDKIGSTNGNVSITRDVSGEGVQQSLLKMLEGTVANVPPQGGRKHPEQQYIQL 288 Query: 292 NTDHILFIASGAF-------------------------HVSRPADL-------------- 312 +T +ILFI G F + P +L Sbjct: 289 DTSNILFICGGTFVGIEEIIRRRLGHRTLGFGEGANVRNEQTPGELVAQVQTEDILKFGL 348 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV +L+ L+ +LT+ +++L+ QY+ L E L+FTE+++ A+A Sbjct: 349 IPELVGRMPVISYLQPLDLEGLIQVLTEPKNSLVKQYQALFAMENCELEFTEEALHAIAK 408 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 AV+ +GAR L+ +ME V+ DI + DL E+ Sbjct: 409 KAVDKG-----VGARGLRGIMEDVMLDIMY---DLPEQ 438 >gi|325268721|ref|ZP_08135350.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella multiformis DSM 16608] gi|324988965|gb|EGC20919.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella multiformis DSM 16608] Length = 412 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF +V+R P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHTVGYNSVQNVARIDKADLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L +GI L FT+ ++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYVKLFGMDGITLSFTDPALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D F + K+ + EYVR + Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 64 PKEIKKYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 >gi|330814218|ref|YP_004358457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Pelagibacter sp. IMCC9063] gi|327487313|gb|AEA81718.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Pelagibacter sp. IMCC9063] Length = 380 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 SP+EI S LD Y+IGQ+ AK+ +++A+ N ++R EL NILL+GPTG Sbjct: 21 SPKEIFSTLDEYVIGQKTAKQILSVAVHNHYKRLNYEGKNNKGDVELAKSNILLMGPTGC 80 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 81 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 135 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 136 GIVYIDEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 195 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 196 DTTNILFICGGAFAGIDKIISSRDKGSSIGFGSKLNTKAEKKVGELLKSIEPEDLLKFGL 255 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L++ IL + +++L QY +L + EG+ L+F++D++ A+A Sbjct: 256 IPEFIGRLPIISTLEDLDEDSLVKILEEPKNSLTKQYAKLFEIEGVKLNFSKDALKAIAG 315 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L++++E VL + F Sbjct: 316 KAI-LRKT----GARGLRSIIEEVLLETMF 340 >gi|114767021|ref|ZP_01445929.1| ATP-dependent protease ATP-binding subunit [Pelagibaca bermudensis HTCC2601] gi|114540805|gb|EAU43869.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. HTCC2601] Length = 421 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 SPREI LD Y+IGQ AKR +++A+ N ++R Q +D+ EL NILL+GPTG Sbjct: 65 SPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSQKSSDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDPEERGTGEVFKDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVTILTAPKNALVKQYQRLFEMEDTQLTFTDDALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F + E T VV++ E V Sbjct: 358 KAIERKT-----GARGLRSILEGILLDTMFELPGMDEVTEVVVNDEAV 400 >gi|56695905|ref|YP_166256.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria pomeroyi DSS-3] gi|81350417|sp|Q5LUP9|CLPX_SILPO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56677642|gb|AAV94308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria pomeroyi DSS-3] Length = 424 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +PR+I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 67 TPRDICDVLDDYVIGQSTAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 180 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 241 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRASDERGVGELFTELEPEDLLKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT+D++ A+A Sbjct: 301 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDDALKAIAK 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F + T VV++ E V Sbjct: 361 RAIERKT-----GARGLRSIMEDILLDTMFDLPSMDNVTKVVVNEEAV 403 >gi|218768389|ref|YP_002342901.1| ATP-dependent protease ATP-binding subunit ClpX [Neisseria meningitidis Z2491] gi|21263484|sp|Q9JTX8|CLPX_NEIMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|121052397|emb|CAM08729.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria meningitidis Z2491] Length = 414 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|227874922|ref|ZP_03993074.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris ATCC 35243] gi|269976477|ref|ZP_06183462.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus mulieris 28-1] gi|306818246|ref|ZP_07451976.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris ATCC 35239] gi|307701823|ref|ZP_07638837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus mulieris FB024-16] gi|227844499|gb|EEJ54656.1| ATP-dependent protease ATP-binding subunit [Mobiluncus mulieris ATCC 35243] gi|269935278|gb|EEZ91827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus mulieris 28-1] gi|304648985|gb|EFM46280.1| ATP-dependent Clp protease ATP-binding subunit [Mobiluncus mulieris ATCC 35239] gi|307613081|gb|EFN92336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mobiluncus mulieris FB024-16] Length = 419 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI L Y+IGQ++AKRA+++A+ N ++R + D E+ NILL+GPTG Sbjct: 63 TPHEIFDFLQMYVIGQENAKRALSVAVYNHYKRVRAMRRGEDSGMEMTKSNILLLGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+++ R Sbjct: 123 GKTHLARSLARLLKVPFCIVDATALTEAGYVGEDVENILLRLIQAADGDVKKAER 177 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYIDEIDKISRKGENASITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQDFIEI 237 Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314 NT ILFIA+GAF P DL +P Sbjct: 238 NTSSILFIAAGAFAGIDEIVKARLGQRSTGFGSDLKSMKEHGDLYAKVTPDDLHKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ +LN D +LT+ ++ ++ QY+ L + +G+ L FT+++I +A VA Sbjct: 298 EFIGRLPVITNVSALNVDDLSRVLTEPKNAILKQYQHLFELDGVKLTFTDEAIREVARVA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRL 421 + GAR L T+ME+ L I F S D+ E V+I+ E V + Sbjct: 358 EKRGT-----GARSLSTLMEQTLAAIMFDLPSRDDVAE--VIIEPECVSM 400 >gi|189219853|ref|YP_001940494.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum infernorum V4] gi|189186711|gb|ACD83896.1| ATP-dependent protease Clp, ATPase subunit [Methylacidiphilum infernorum V4] Length = 484 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVG 60 L F F+P++I + LDR++I Q++AK+ +++A+ + + ++ L + +N+LLVG Sbjct: 19 LQFQFTPKDIKAYLDRFVIKQEEAKKVLSVAVCDHYNQVKEALMGRGPAHYVKQNVLLVG 78 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+GVGKT + R LA G P +K + TKF+E GYVG +VE ++R+L+ A Sbjct: 79 PSGVGKTYLVRCLADCIGVPMVKADATKFSETGYVGADVEDLVRELIQQA 128 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 70/238 (29%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D++ + R+ IQ E +GI++LDE DK+ A G VS GVQ +LL L+E + Sbjct: 116 DVEDLVRELIQQAEGDVEIAQFGIIYLDEVDKL-ATSHFMGRDVSGRGVQSNLLKLLEET 174 Query: 283 SVSTKYG----------------------SINTDHILFIASGAF--------------HV 306 V K +INT +ILFI SGAF H+ Sbjct: 175 DVPIKAAHDVLGQMQSLFDFQKGAKAPRKTINTRYILFIVSGAFEKLSEIVQKRIRRSHL 234 Query: 307 SR--------PADLL--------------PEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 P+D++ PE GR PVRV + L K D +L D+E + Sbjct: 235 GFQPHGPEGIPSDIIAEAKTADFVEYGLEPEFIGRLPVRVFCQPLGKDDLFHVLRDSEGS 294 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ QYK GI L FTE+++ +A+ A+ + GAR L T+ E++L F Sbjct: 295 ILKQYKSSFAAYGIELKFTEEALQLIAEQAMEEKT-----GARGLMTICEKILRPFRF 347 >gi|117926915|ref|YP_867532.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetococcus sp. MC-1] gi|166214782|sp|A0LDT3|CLPX_MAGSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117610671|gb|ABK46126.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Magnetococcus sp. MC-1] Length = 420 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 5/115 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGV 64 +P EI S LD Y+IGQ +AKR +A+A+ N ++R + AD+ E+ N+L++GPTG Sbjct: 64 TPMEIKSTLDDYVIGQDNAKRTLAVAVYNHYKRLESNDTSADV--EISKSNVLMIGPTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LARL PF + T TE GYVG +VE II L+ A N V +++R Sbjct: 122 GKTLLAQTLARLLDVPFTITDATTLTEAGYVGEDVENIILRLLQAADNDVEKAQR 176 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 106/234 (45%), Gaps = 60/234 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ S +Y + Sbjct: 177 GIVFIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQV 236 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T +IL I GAF+ P DLL Sbjct: 237 DTTNILVICGGAFNGLEKVIEKRSSKHHGIGFGATVRKNSKEESVNVLLKELEPEDLLAF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L+K ILT+ ++ L+ QY++L++ E + L FT+ +++AL Sbjct: 297 GLIPEFVGRLPVVATLEELSKEALVRILTEPKNALVKQYQKLLEMENVKLTFTDGALEAL 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A A+ + GAR L+ ++E L DI F Q + VVI+ E V I Sbjct: 357 AQRAIERKT-----GARGLRALLESTLLDIMFEIPSKQGVREVVINREVVEKQI 405 >gi|227548724|ref|ZP_03978773.1| ATP-dependent protease ATP-binding subunit [Corynebacterium lipophiloflavum DSM 44291] gi|227079191|gb|EEI17154.1| ATP-dependent protease ATP-binding subunit [Corynebacterium lipophiloflavum DSM 44291] Length = 429 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADL----RD---ELMPKNILLV 59 P EIV LDRY+IGQ AKR +A+A+ N ++R Q PA L RD E+ NILL+ Sbjct: 67 PSEIVGFLDRYVIGQDSAKRTLAVAVYNHYKRIRSQSPASLSSRKRDDDVEIAKSNILLL 126 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 GPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 58/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 185 QHGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFI 244 Query: 290 SINTDHILFIASGAF---------HVSR-------------------------PADL--- 312 I+T +ILFI +GAF V + P DL Sbjct: 245 QIDTTNILFIVAGAFAGLDKVIAERVGKRGIGFGAEIDSKSERDNSNLLGQVMPGDLVKF 304 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR P+ +++ L++ +L + +++L+ QY L +G L+ T+D++ + Sbjct: 305 GLIPEFIGRLPILANVEDLDRDALVRVLKEPKNSLVKQYSRLFALDGAELELTDDALGEI 364 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 AD A + GAR L+ +ME +L + F D ++ T VVI AE VR Sbjct: 365 ADRAAERKT-----GARGLRAIMEELLVPVMFDLPDREDVTRVVISAEVVR 410 >gi|325266076|ref|ZP_08132762.1| ATP-dependent Clp protease ATP-binding subunit [Kingella denitrificans ATCC 33394] gi|324982714|gb|EGC18340.1| ATP-dependent Clp protease ATP-binding subunit [Kingella denitrificans ATCC 33394] Length = 427 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P ++V++L+ ++IGQ++AK+A+A+A+ N ++R + P AD R EL N+L++GPTG GK Sbjct: 72 TPAQLVAQLNEHVIGQENAKKALAVAVYNHYKRLRQPEADSRVELNKSNVLMIGPTGSGK 131 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T + + LAR PF + T TE GYVG +VE II L+ Sbjct: 132 TYMVQSLARQLNVPFAMADATTLTEAGYVGEDVETIITKLL 172 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 HGIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTMASVPQQGGRRNPNQQFIN 243 Query: 291 INTDHILFIASGAF----------------------HVS-------------RPADLL-- 313 ++T +ILFI GAF H P DL+ Sbjct: 244 VDTSNILFICGGAFAGLDKVIRQRTEKGGIGFGADVHSKDEDSKIGELFAQVEPEDLIKF 303 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E L+ E ++ A+ Sbjct: 304 GLIPELIGRLPVLTSLNELDEDALVRILTEPKNALVKQYQALFAMENKTLEMDESALRAV 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A +A+ + GAR L+++MERVL D + DL E VV+ E+V Sbjct: 364 AQLAMKRKT-----GARGLRSIMERVLLDTMYLLPDLPEVAKVVVRREHV 408 >gi|118443245|ref|YP_878862.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium novyi NT] gi|229889851|sp|A0Q2L0|CLPX_CLONN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|118133701|gb|ABK60745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium novyi NT] Length = 431 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ AK+A+A+A+ N ++R D+ D EL NILL+GPTG GKT Sbjct: 63 PSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLARLLNVPFAMADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF S P DLL Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSTVQSKEEKDIGELLKESVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+ S IL + ++ L+ QYK+L+ + + L+F ++++ A+AD Sbjct: 295 IPEFIGRLPIMVTLQSLDNSALVRILKEPKNALVKQYKKLLLMDNVELEFEDEALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E + DI F S K V+I+ + ++ Sbjct: 355 EAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKVIINKDTIK 398 >gi|90419400|ref|ZP_01227310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas manganoxydans SI85-9A1] gi|90336337|gb|EAS50078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aurantimonas manganoxydans SI85-9A1] Length = 422 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI++ LD Y+IGQ AK+ +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 65 TPQEIIAVLDDYVIGQSFAKKVLSVAVHNHYKRLAHAAKSNDVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF +V+ P D L Sbjct: 238 DTANILFICGGAFAGLDKIISDRGRKTSIGFAANVAGPDDRRTGDVFRQVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ IL + ++ L+ QY+ L + E + L F ED++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEAALVQILEEPKNALVKQYQRLFEMENVELSFHEDALRAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ V+ +E V Sbjct: 358 KAIERKT-----GARGLRSIMEAMLLDTMFDLPTLEGVQEVVISEDV 399 >gi|325264757|ref|ZP_08131486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] gi|324030049|gb|EGB91335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] Length = 423 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 64 LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF H P DL Sbjct: 236 IDTTNILFICGGAFEGIDKMIETRLDKKSIGFNAEIASKHEENVDVLLHQVLPQDLVKYG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L L+K ILT+ +S ++ QY++L++ +G+ L+F ++++ A+A Sbjct: 296 LIPELVGRLPVTVSLDMLDKEALIRILTEPKSAIVKQYQKLLELDGVRLEFDKEALYAIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + ++ + GAR L+ +ME ++ D F SD K I E V+ Sbjct: 356 ETSLARKT-----GARGLRAIMEDIMMDTMFKVPSDDTIKACRITKEAVK 400 >gi|323343309|ref|ZP_08083536.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis ATCC 33269] gi|323095128|gb|EFZ37702.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella oralis ATCC 33269] Length = 414 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I + LD+Y+IGQ +AKR +++++ N ++R Q P D E+ NI++VG TG GKT Sbjct: 67 PKDIKAYLDQYVIGQDEAKRYLSVSVYNHYKRLQQPKDENGVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +ARL PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 127 LLARTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 169 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 238 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 239 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L + +GI L FTE+++D + D Sbjct: 299 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIVKQYVKLFEMDGIKLSFTEEALDYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV ++GAR L++++E ++ D F + K + EY + Sbjct: 359 AVEY-----ELGARGLRSIVESIMMDAMFEIPSKRLKNFEVTREYTQ 400 >gi|190573023|ref|YP_001970868.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas maltophilia K279a] gi|254524793|ref|ZP_05136848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stenotrophomonas sp. SKA14] gi|229485949|sp|B2FQR3|CLPX_STRMK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|190010945|emb|CAQ44554.1| ATP-dependent clp protease ATP-binding subunit ClpX [Stenotrophomonas maltophilia K279a] gi|219722384|gb|EED40909.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stenotrophomonas sp. SKA14] Length = 429 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + D EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDDVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSSERKQEVGKVLAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L + E + L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407 >gi|253681026|ref|ZP_04861829.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum D str. 1873] gi|253562875|gb|EES92321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum D str. 1873] Length = 431 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ AK+A+A+A+ N ++R D+ D EL NILL+GPTG GKT Sbjct: 63 PSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSNVDIDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LARL PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF S P DLL Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLKESVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SLN IL + ++ L+ QYK+L+ + + L+F E+++ ++AD Sbjct: 295 IPEFIGRLPIMVTLQSLNNDALVRILKEPKNALVKQYKKLLLMDNVELEFEEEALKSIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A++ + GAR L++++E V+ DI F S K V+I+ + + Sbjct: 355 EAISRKT-----GARGLRSIIEEVMRDIMFDIPSKYDIKKVIINKDTI 397 >gi|160893843|ref|ZP_02074626.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50] gi|156864495|gb|EDO57926.1| hypothetical protein CLOL250_01397 [Clostridium sp. L2-50] Length = 430 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ++AK+ +++A+ N ++R D EL NIL+VGPTG GK Sbjct: 62 LKPKEIREFLDQYVIGQEEAKKVLSVAVYNHYKRIMADKDFDVELQKSNILMVGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 165 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 64/245 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GI+++DE DKI + I VS EGVQ+ LL +VEG+ S ++ Sbjct: 174 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPHQEFIQ 233 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T +ILFI GAF P D Sbjct: 234 IDTSNILFICGGAFDGLEKIIDNRIGKKAIGFNAEVVDKTEQDIGELLKQVTPQDFVKYG 293 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L LNK ILTDT+S + QYK+L + +G+ L+F +D++ A+A Sbjct: 294 LIPEFVGRLPITVTLDLLNKDALVRILTDTKSAICKQYKKLFELDGVELEFDKDALYAIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-------ASDLQEKTVVIDAEYVRLHIG 424 + A+ + GAR L++++E+ D+ + A + K V+ D + Sbjct: 354 EEAMERKT-----GARGLRSIIEKATLDLMYEIPSDDKVAKCVITKEVITDGAQPEITYS 408 Query: 425 DFPSE 429 D P+E Sbjct: 409 DNPAE 413 >gi|134300400|ref|YP_001113896.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfotomaculum reducens MI-1] gi|134053100|gb|ABO51071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfotomaculum reducens MI-1] Length = 416 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ AKR +A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 61 PKEIKDILDQYVIGQDSAKRQLAVAVYNHYKRINLGGKVEDVELSKSNIVMLGPTGCGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 60/227 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T +ILFI GAF + + P DLL Sbjct: 233 DTTNILFICGGAFDGIDKIIQNRTGKKQLGFGAEIETQKEKKIGEILANILPEDLLKFGL 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT+ ++ L QY++L + +G+ L+ +S+ +A Sbjct: 293 IPEFVGRLPVIVTLDALDEEALVRILTEPKNALTKQYQKLFELDGVDLELQPESLREVAK 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ + GAR L+ +ME + I + S D+ + + DA Sbjct: 353 EALKRKT-----GARGLRAIMEEAMLGIMYDIPSREDISKVVITKDA 394 >gi|254455799|ref|ZP_05069228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Pelagibacter sp. HTCC7211] gi|207082801|gb|EDZ60227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Pelagibacter sp. HTCC7211] Length = 422 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI S LD Y+IGQ AK+ +++A+ N ++R EL NILLVGPTG G Sbjct: 61 SPKEICSVLDDYVIGQPHAKKVLSVAVHNHYKRLNYENKTSKNVELAKSNILLVGPTGCG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE II L+ + V +++R Sbjct: 121 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 174 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 62/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGADVKNTQDKKTGEWMKTLEPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L++ IL + +++L QY+EL K +G L F E+++ +A Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLIKILQEPKNSLTKQYQELFKLDGAKLTFKENALKEIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A++ + GAR L++++E +L + S +++E V++DA R Sbjct: 355 KAISKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDAGAAR 398 >gi|83592886|ref|YP_426638.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodospirillum rubrum ATCC 11170] gi|123739541|sp|Q2RU44|CLPX_RHORT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83575800|gb|ABC22351.1| ClpX, ATPase regulatory subunit [Rhodospirillum rubrum ATCC 11170] Length = 422 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP++I+ LD Y+IGQQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 SPKDILKVLDDYVIGQQHAKKVLSVAVHNHYKRLSQAGKNSDVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 90/210 (42%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIISARGKGSSIGFGADVRDPEARRTGEVLRAVEPEDLLKYGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L + E L F ED++ +A Sbjct: 298 IPEFVGRLPVLATLDDLDEDALVDILTTPKNALVKQYQRLFEMESTQLSFKEDALRCIA- 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 L + GAR L+++ME +L D F Sbjct: 357 ----LKAIARKTGARGLRSIMEGILLDTMF 382 >gi|194595679|gb|ACF77122.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum brasilense] Length = 422 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I + LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 65 TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRGPDERSTGDILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT ++ L+ QY+ L + E + L+F++D++ ++ Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISH 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L ++++++ E V Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 400 >gi|288803881|ref|ZP_06409306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella melaninogenica D18] gi|288333646|gb|EFC72096.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella melaninogenica D18] Length = 412 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 64 PKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKDDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF +V++ P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRMNTHTVGYNSVQNVAKIDKNDLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L K +GI L FTE ++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYIKLFKMDGIELTFTEAALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 V +GAR L++++E V+ D F + K+ + EYVR + Sbjct: 356 GVEYK-----LGARGLRSIVEAVMMDAMFDVPSRRIKSFEVTEEYVRQQL 400 >gi|148652117|ref|YP_001279210.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter sp. PRwf-1] gi|172048458|sp|A5WC69|CLPX_PSYWF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148571201|gb|ABQ93260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter sp. PRwf-1] Length = 425 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 14/117 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53 +P+EI LD Y+IGQ+ AK+A+++A+ N ++R ++ A L + EL Sbjct: 67 TPKEIREHLDGYVIGQETAKKALSVAVYNHYKRLKVAAKLAEDKKQAKLGADDAMVELSK 126 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I++ L+ A Sbjct: 127 SNILLIGPTGSGKTLLAQTLARMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAA 183 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ + +G + Sbjct: 193 GIIYVDEIDKISKKGENMSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPNQELIQV 252 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +IL I GAF P DL+ Sbjct: 253 DTSNILIIVGGAFSGLDKVIQQRTEKTGIGFNAEVKSKDDGKQLSELFKQVEPEDLIKFG 312 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ ++ QY+ L + E L FTE + A+A Sbjct: 313 LIPELIGRLPVIATLEELDEEALMQILTEPKNAIVKQYQYLFEMEDAELSFTEAGLKAIA 372 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E L D + + + K VV+D + + Sbjct: 373 HKAMERKT-----GARGLRSIVENALLDTMYELPSMSDAKQVVVDEDVI 416 >gi|195494256|ref|XP_002094759.1| GE20032 [Drosophila yakuba] gi|194180860|gb|EDW94471.1| GE20032 [Drosophila yakuba] Length = 812 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 68/232 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST-------KYGS 290 GIV+LDE DKI A RD G EGVQ+ +L ++EGS VS + Sbjct: 542 GIVYLDEVDKICALSGTKQRRDIGG------EGVQQGMLKILEGSVVSLIDRSQQFRKVQ 595 Query: 291 INTDHILFIASGAFHV---------------------SRPAD------------------ 311 ++T +ILF+ASGA+ + P D Sbjct: 596 MDTTNILFVASGAYTALDKIIARRLNEKDSDVAPTSGALPPDADQHKRDKCLSKVQACDL 655 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 ++PE GRFP+ V SLN + ILT+ S L+ QYK L++ +G+ L F+ED++ Sbjct: 656 AEFGMIPEFVGRFPILVPFHSLNANMLVRILTEPRSALVSQYKALLRLDGVDLTFSEDAL 715 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +++A +A+ +N+ GAR L+++ME++L D FS + V I A+ V Sbjct: 716 ESVAQLAIEMNT-----GARGLRSIMEQLLLDPMFSVPGSDIRGVHITADNV 762 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E ++ L+ A N V Sbjct: 477 NIMMLGPTGSGKTLIAKSIAKCLDVPFAICDCTSLTQAGYVGEDIESVLLKLLQDANNDV 536 Query: 115 RESR 118 ++ Sbjct: 537 ERAQ 540 >gi|227544995|ref|ZP_03975044.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri CF48-3A] gi|300909970|ref|ZP_07127430.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus reuteri SD2112] gi|130893166|gb|ABO32596.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus reuteri] gi|227185012|gb|EEI65083.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri CF48-3A] gi|300892618|gb|EFK85978.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus reuteri SD2112] Length = 416 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R + D D EL NI ++GPTG Sbjct: 63 TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL++ +G L FT+ ++ A+A Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSKLTFTDGALRAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A+ N+ GAR L++++E V+ D+ F S D+++ V+ID V H Sbjct: 357 QLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403 >gi|148543885|ref|YP_001271255.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus reuteri DSM 20016] gi|184153285|ref|YP_001841626.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus reuteri JCM 1112] gi|194468440|ref|ZP_03074426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus reuteri 100-23] gi|227364793|ref|ZP_03848841.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri MM2-3] gi|325682582|ref|ZP_08162099.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus reuteri MM4-1A] gi|167009017|sp|A5VJ94|CLPX_LACRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148530919|gb|ABQ82918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus reuteri DSM 20016] gi|183224629|dbj|BAG25146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus reuteri JCM 1112] gi|194453293|gb|EDX42191.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus reuteri 100-23] gi|227070137|gb|EEI08512.1| ATP-dependent protease ATP-binding subunit [Lactobacillus reuteri MM2-3] gi|324978421|gb|EGC15371.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus reuteri MM4-1A] Length = 416 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EIV+ELD Y+IGQ DAK+ +A+A+ N ++R + D D EL NI ++GPTG Sbjct: 63 TPGEIVNELDDYVIGQGDAKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL++ +G L FT+ ++ A+A Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSQLTFTDGALRAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A+ N+ GAR L++++E V+ D+ F S D+++ V+ID V H Sbjct: 357 QLAIKRNT-----GARGLRSIIEDVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403 >gi|296134053|ref|YP_003641300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola sp. JR] gi|296032631|gb|ADG83399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermincola potens JR] Length = 419 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 PREI LD+Y+IGQ+ AK+A+A+A+ N ++R + + D EL NI+++GPTG GK Sbjct: 63 KPREIKEILDQYVIGQEPAKKALAVAVYNHYKRINMGNKIDDVELQKSNIVMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 236 DTTNILFICGGAFDGIEKIIQNRIGKKTLGFGAEIKSQKEKNVGDILKHI-LPEDLLKFG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L++L+++ ILT+ + LI QY++L + + I L+FT+D++ +A Sbjct: 295 LIPEFVGRLPVIVTLEALDENALVRILTEPRNALIKQYQKLFELDNIALEFTDDALRTIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 355 QEAMKRNT-----GARGLRAIIEDIMLEVMY 380 >gi|260591258|ref|ZP_05856716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella veroralis F0319] gi|260537123|gb|EEX19740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella veroralis F0319] Length = 412 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++A+ N ++R Q P +D E+ NI++VG TG GKT Sbjct: 64 PKEIKQYLDEYIIGQDEAKRYLSVAVYNHYKRLQQPKSDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------HV--------------------SRPADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNAHVIGYNSVQNVAKIDKKDLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY +L + +GI L FTE ++D + D Sbjct: 296 PEIIGRLPVLTYLSPLDREALRNILIEPKNSIVKQYIKLFEMDGIKLTFTEAALDCIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D F K + +YVR + Sbjct: 356 AVEYK-----LGARGLRSIVESVMMDAMFEVPSRDVKEFEVTEQYVRQQL 400 >gi|28378738|ref|NP_785630.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum WCFS1] gi|254556941|ref|YP_003063358.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum JDM1] gi|300768256|ref|ZP_07078161.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180930|ref|YP_003925058.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257506|sp|Q88VE2|CLPX_LACPL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28271575|emb|CAD64480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus plantarum WCFS1] gi|254045868|gb|ACT62661.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum JDM1] gi|300494320|gb|EFK29483.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046421|gb|ADN98964.1| ATP-dependent protease ATP-binding subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 421 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 70/109 (64%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------LMPKNILLVGP 61 +P+EIV ELD+Y+IGQ +AKR +++A+ N ++R + AD +E L NI LVGP Sbjct: 63 TPKEIVDELDQYVIGQNEAKRTLSVAVYNHYKRVKAMADNDEETEDGPELQKSNISLVGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TGSGKTFLAQSLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 171 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 60/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 181 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 240 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T +ILFI GAF V R P DLL Sbjct: 241 DTTNILFIVGGAFDGIEDIVKRRLGDKTIGFGTDTDGKNAVLDDSKSLMQQVVPEDLLQF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L+ L + D ILT+ ++ L+ QY+ L+ +G LDF +D++ A+ Sbjct: 301 GLIPEFIGRLPILTALERLTEDDLVRILTEPKNALVKQYQRLIALDGAELDFNDDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A A+ N+ GAR L++++E + DI + ++ K V+I E V H Sbjct: 361 AQEALARNT-----GARGLRSIIEDTMRDIMYDIPSREDVKKVIITRETVADH 408 >gi|323703642|ref|ZP_08115285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfotomaculum nigrificans DSM 574] gi|323531414|gb|EGB21310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfotomaculum nigrificans DSM 574] Length = 416 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 61 PKEIKAILDQYVIGQESAKKQLAVAVYNHYKRINLGGKVEDVELSKSNIIMLGPTGSGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 121 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 232 Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 233 DTTNILFICGGAFDGIEKIIQNRTGKKTMGFGAEIQSKREQKIGEILAQILPEDLLKFGL 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT+ ++ L QY++L + +G+ L+ D++ +A Sbjct: 293 IPEFVGRLPVIVTLDALDEGALVRILTEPKNALTKQYEKLFELDGVSLEIQPDALREVAK 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ +ME V+ +I + Sbjct: 353 EALKRKT-----GARGLRAIMEEVMLNIMY 377 >gi|255536256|ref|YP_003096627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Flavobacteriaceae bacterium 3519-10] gi|255342452|gb|ACU08565.1| ATP-dependent Clp protease ATP-binding subunit clpX [Flavobacteriaceae bacterium 3519-10] Length = 393 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 173 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 232 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 NT +ILFIA GAF +++ D L+ Sbjct: 233 NTQNILFIAGGAFDGIKEIIERRLNKQAIGFSAEKLNKTEDEDYILSQLNAIDLRKFGLI 292 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GRFP+ +L+ L K I+ + ++++I Q+ EL K +G+ L FT++++DA+ + Sbjct: 293 PELLGRFPIVTYLEKLTKETMVRIMKEPKNSIINQFVELFKMDGVSLQFTDEAVDAIVEE 352 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 ++ +GAR L+ E+VLED F +E VV++ + V+ Sbjct: 353 TMDKG-----LGARGLRGTTEKVLEDYMFDIEAQEE--VVLNKDNVKF 393 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI + LD+Y+IGQ AK+ +++A+ N ++R D E + NI+++G TG GK Sbjct: 60 PKEIKTFLDQYVIGQDQAKKQLSVAVYNHYKRLLHAKDENREVEIEKSNIIMIGETGTGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +AR PF V+ T TE GYVG +VE I+ L+ VA Sbjct: 120 TLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 163 >gi|119898361|ref|YP_933574.1| ATP-dependent protease ATP-binding subunit ClpX [Azoarcus sp. BH72] gi|166214754|sp|A1K782|CLPX_AZOSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119670774|emb|CAL94687.1| ATP-dependent Clp protease ATP-binding subunit [Azoarcus sp. BH72] Length = 422 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P EI LD+Y+IGQ AKR +++A+ N ++R + + +DE L NILL+GPTG G Sbjct: 66 TPHEICQILDQYVIGQAQAKRNLSVAVYNHYKRLRHLSGRQDEVELSKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPNQDFIQV 239 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312 +T ++LFI GAF V R P DL Sbjct: 240 DTTNVLFICGGAFDGLDKVIRNRTEKMGIGFGAEVKSRQGKNLTETFRQVEPEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL + ++ L+ QY++L EG+ L+ ++ A+A Sbjct: 300 IPEFVGRLPVVATLQELDEDALIQILIEPKNALVKQYQKLFSMEGVDLEIRPAALHAVAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A+ + GAR L++++E L DI + L EK VV Sbjct: 360 KAIKRKT-----GARGLRSILEAALLDIMYDLPQLDGVEKVVV 397 >gi|332300232|ref|YP_004442153.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas asaccharolytica DSM 20707] gi|332177295|gb|AEE12985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Porphyromonas asaccharolytica DSM 20707] Length = 439 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS ++ K+ + Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT ILFI +GAF H++ R L+ Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L +L+ IL + ++ + QY++L + +G+ L F ED++ + V Sbjct: 325 PEIIGRLPILTYLDALDSDSLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHV 384 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E+++ D + L+ KT+ I +Y R Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 11/110 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE--------LMPKNIL 57 P+EI + LDRY+IGQ DAK+ +++A+ N ++R Q + DE + NI+ Sbjct: 83 PQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRILASQEKGEKSDESSKLDDVEIAKSNII 142 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +VGPTG GKT +++ +AR+ PF V+ T T+ GYVG ++E II L+ Sbjct: 143 MVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192 >gi|182679146|ref|YP_001833292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia indica subsp. indica ATCC 9039] gi|238691227|sp|B2IGP2|CLPX_BEII9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|182635029|gb|ACB95803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beijerinckia indica subsp. indica ATCC 9039] Length = 421 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPREICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLEKIISTRGKTTSIGFAASVQAPDDRRTGEIFRKVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + ILT+ ++ L+ QY+ L + E L F +++++ +A Sbjct: 298 IPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L D F L Sbjct: 358 KAIERKT-----GARGLRSIMESILLDTMFDLPGL 387 >gi|304391392|ref|ZP_07373334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp. R2A130] gi|303295621|gb|EFL89979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ahrensia sp. R2A130] Length = 427 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ L+ Y+IGQ AKR +++A+ N ++R A+ D EL NI+L+GPTG GK Sbjct: 68 TPQEILDVLNDYVIGQPHAKRVLSVAVHNHYKRLNHAAENEDVELAKSNIMLIGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFIA GAF +V P D L Sbjct: 241 DTTNILFIAGGAFAGLDKIISDRGRQTGIGFGANVESPEDRKTGELFKALEPEDLLRFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ A+A Sbjct: 301 IPEFVGRIPVLATLEDLDEDSLVQILSEPKNALIKQYQRLFEMEEVTLSFQEDALRAIAQ 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F L+ + VVI E V Sbjct: 361 KAITRKT-----GARGLRSIIEGILLDTMFELPSLEGVQEVVISEEVV 403 >gi|170016865|ref|YP_001727784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc citreum KM20] gi|238688952|sp|B1MXT8|CLPX_LEUCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169803722|gb|ACA82340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc citreum KM20] Length = 415 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P +IV+EL+ Y+IGQ+DAK+ +A+A+ N ++R + + EL NI L+GPTG G Sbjct: 64 TPHQIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENVSPTTDVELQKSNIALIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQSA 168 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 62/229 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL L+EG+ SV + G Sbjct: 177 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTNASVPPQGGRKHPQQELIQ 236 Query: 291 INTDHILFIASGAF------------------------------------HVSRPAD--- 311 ++T +ILFI GAF HV +P D Sbjct: 237 VDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAVALDSENILEHV-QPEDMTK 295 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 L+PE GR P+ L L D ILT+ ++ LI QY L+ + + L F ++++A Sbjct: 296 FGLIPEFIGRLPIVTVLDELKVDDLTKILTEPKNALIKQYTALLGLDDVELVFQPEALEA 355 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 +A++A+ ++ GAR L++++E V++DI F + D EK ++ A Sbjct: 356 MAELAIKRHT-----GARGLRSIIESVMKDIMFDIPSRDDVEKVIITKA 399 >gi|51891497|ref|YP_074188.1| ATP-dependent protease ATP-binding subunit ClpX [Symbiobacterium thermophilum IAM 14863] gi|61211457|sp|Q67SJ9|CLPX_SYMTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|51855186|dbj|BAD39344.1| ATP-dependent Clp protease ATP-binding subunit [Symbiobacterium thermophilum IAM 14863] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ+ AKR +A+A+ N ++R L + L D EL NIL++GPTG GKT Sbjct: 65 PAEIKAILDQYVIGQERAKRTLAVAVYNHYKRINLGSKLDDVELQKSNILMLGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 NT +ILFI GAF V R P DLL Sbjct: 237 NTTNILFICGGAFDGIDKIIANRVGRSGLGFGADIRSKQEQNVGELLKQIMPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L++ IL + ++ L+ QY++L++ + I L+F E+++ A+A Sbjct: 297 IPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ + Sbjct: 357 EALRRNT-----GARGLRAIIEDIMTDVMY 381 >gi|299066732|emb|CBJ37926.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum CMR15] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------L 312 +T +ILFI GAF +++ +D L Sbjct: 242 DTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAL 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|114569889|ref|YP_756569.1| ATP-dependent protease ATP-binding subunit ClpX [Maricaulis maris MCS10] gi|122316140|sp|Q0AQ06|CLPX_MARMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114340351|gb|ABI65631.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Maricaulis maris MCS10] Length = 423 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+EI + L+ Y+IGQ AKR +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 67 SPQEIFNVLNDYVIGQAHAKRVLAVAVHNHYKRLNHASQNSDVELAKSNILLIGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 127 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 179 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILF+ GAF +S+ P DLL Sbjct: 240 DTTNILFVVGGAFAGLDKVISQRGQGSSIGFGADVREPDARRTGEILREVEPDDLLRFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ ILT+ ++ L+ QY+ L + EG+ L FTED++ A+A+ Sbjct: 300 IPEFVGRLPVIATLEDLDIGALVQILTEPKNALVKQYQRLFEMEGVGLTFTEDALKAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L + F L+ + +V++ E V Sbjct: 360 RAIARKT-----GARGLRSIMEGILLETMFDLPSLEGVEEIVVNGEVV 402 >gi|114330231|ref|YP_746453.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas eutropha C91] gi|122314710|sp|Q0AJI3|CLPX_NITEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114307245|gb|ABI58488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosomonas eutropha C91] Length = 427 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 76/117 (64%), Gaps = 5/117 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGPT 62 +P EI LD+Y+IGQ+ AK+ +++A+ N ++R ++ A D EL NILL+GPT Sbjct: 65 TPHEICETLDQYVIGQESAKKILSVAVYNHYKRLRNLSKVNAGSDDIELAKSNILLIGPT 124 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LARL PF+ + T TE GYVG +VE II+ L+ + + V +++R Sbjct: 125 GSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQASNHDVEKAQR 181 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ + ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTAALVPPQGGRKHPNQEFIQV 241 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313 +T +ILFI GAF + R P DL+ Sbjct: 242 DTTNILFICGGAFDGIDKIIRARSEKSGIGFGADVINQNDRKELNKILGDIEPEDLIKYG 301 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDAL 370 PE GR PV L+ LN++ IL + ++ L+ QY +L E G+ L+F E ++ + Sbjct: 302 LIPEFIGRLPVVATLRELNEAALIQILIEPKNALVKQYSKLFSMEGGVELEFREQALVTI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A A+ + GAR L++++E L DI + ++ + V+ Sbjct: 362 ARKALARKT-----GARGLRSILEETLLDIMYDLPSIKNVSKVV 400 >gi|331270304|ref|YP_004396796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum BKT015925] gi|329126854|gb|AEB76799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum BKT015925] Length = 431 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ AK+A+A+A+ N ++R D+ D EL NILL+GPTG GKT Sbjct: 63 PSEIKTYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDIDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LARL PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF S P DLL Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSEVKSKEEKDIGELLKASVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SLN + IL + ++ L+ QYK+L+ + + L+F E+++ A+AD Sbjct: 295 IPEFIGRLPIMVTLQSLNNNALVRILKEPKNALVKQYKKLLLMDNVELEFEEEALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A++ + GAR L++++E + DI F S K V+I+ + + Sbjct: 355 EAISRKT-----GARGLRSIIEETMRDIMFDIPSKYDIKKVIINKDTI 397 >gi|313885837|ref|ZP_07819580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas asaccharolytica PR426713P-I] gi|312924741|gb|EFR35507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas asaccharolytica PR426713P-I] Length = 439 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS ++ K+ + Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT ILFI +GAF H++ R L+ Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L +L+ IL + ++ + QY++L + +G+ L F ED++ + V Sbjct: 325 PEIIGRLPILTYLDALDSDSLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVHV 384 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E+++ D + L+ KT+ I +Y R Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 13/111 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------LMPKNI 56 P+EI + LDRY+IGQ DAK+ +++A+ N ++R L + +DE + NI Sbjct: 83 PQEIAAYLDRYVIGQTDAKKYLSVAVYNHYKRI-LASQEKDEKSDESSKLDDVEIAKSNI 141 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++VGPTG GKT +++ +AR+ PF V+ T T+ GYVG ++E II L+ Sbjct: 142 IMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192 >gi|167464585|ref|ZP_02329674.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383233|ref|ZP_08057044.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152502|gb|EFX45288.1| ClpX-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 419 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI S LD+Y+IGQ AK+++++A+ N ++R + L D EL NI+LVGPTG GKT Sbjct: 64 PKEICSILDQYVIGQDQAKKSLSVAVYNHYKRINSQSKLEDVELQKSNIVLVGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLEQIIKRRIGKKVIGFSTDGAKLDLKPGEYLSMVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT+ ++ L+ QY++L++ + + L+F +++++A++ Sbjct: 296 PEFVGRLPVVSTLEPLDEAALVRILTEPKNALVKQYQKLLEMDNVKLEFEKEALEAISQE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ N+ GAR L+ ++E ++ D+ F + +D+ E T+ D Sbjct: 356 AIKRNT-----GARGLRAIIESIMLDVMFDVPTRTDVTECTITQD 395 >gi|109899440|ref|YP_662695.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas atlantica T6c] gi|123170858|sp|Q15R47|CLPX_PSEA6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|109701721|gb|ABG41641.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudoalteromonas atlantica T6c] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R + D+ D EL NILL+GPTG G Sbjct: 67 TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLMGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAHTGTGIGFGTAIKDSSNKSKEGELLKKVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ L++ IL + +++L QY L E L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFREDALQAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL D + + VV+D +R Sbjct: 360 AKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405 >gi|228470546|ref|ZP_04055403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas uenonis 60-3] gi|228307673|gb|EEK16649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Porphyromonas uenonis 60-3] Length = 439 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS ++ K+ + Sbjct: 205 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVINVPPYGGRKHPEQKFIQV 264 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT ILFI +GAF H++ R L+ Sbjct: 265 NTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQMDYQTIQNNLLAHITHQDLRRYGLI 324 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L +L+ IL + ++ + QY++L + +G+ L F ED++ + + Sbjct: 325 PEIIGRLPILTYLDALDSESLLRILVEPKNAITKQYQKLFEMDGVRLTFDEDALKYIVSI 384 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E+++ D + L+ KT+ I +Y R Sbjct: 385 AVETK-----LGARGLRSIVEKIMIDAMYEIPSLKRKTLRITEQYAR 426 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 13/111 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56 P+EI + LDRY+IGQ DAK+ +++A+ N ++R L + +D E+ NI Sbjct: 83 PQEIDAYLDRYVIGQSDAKKYLSVAVYNHYKRI-LASQEKDGKSDESSKLDDVEIAKSNI 141 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L+VGPTG GKT +++ +AR+ PF V+ T T+ GYVG ++E II L+ Sbjct: 142 LMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYVGEDIESIISRLL 192 >gi|113867497|ref|YP_725986.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha H16] gi|123033070|sp|Q0KBK3|CLPX_RALEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|113526273|emb|CAJ92618.1| ATP-dependent Clp protease ATP-binding subunit (ClpX) [Ralstonia eutropha H16] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVKSKEERDASEVLPQTEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLSKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPGALSAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L++++E+ L D+ + + + + VVID + GD P Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN---GDAP 409 >gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit [Ralstonia eutropha JMP134] gi|123760219|sp|Q472D2|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia eutropha JMP134] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDETALVQILIEPKNALVKQYQKLLAMEGVELEIRPAALSAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L++++E+ L D+ + + + + VVID + GD P Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDESTIN---GDAP 409 >gi|310287697|ref|YP_003938955.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium bifidum S17] gi|309251633|gb|ADO53381.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium bifidum S17] Length = 437 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 64/234 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254 Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311 +I+T ILFI GAF H +P + Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV L L ++D ILT+ ++ L+ QY+++ +G+ L FTE +++A Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLAFTEQAVNA 374 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 +A A+ + GAR L++++E+ LE+ F S D+Q+ V++DA VR Sbjct: 375 IASTAITRGT-----GARGLRSIIEKTLEETMFELPSMDDVQQ--VIVDAASVR 421 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 26/126 (20%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------------ 44 P EI + LDRY+IGQ AKR +++A+ N ++R + Sbjct: 65 PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDPL 124 Query: 45 ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 AD+ E+ NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ Sbjct: 125 ADV--EVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182 Query: 105 DLVDVA 110 L+ A Sbjct: 183 RLISAA 188 >gi|310816209|ref|YP_003964173.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium vulgare Y25] gi|308754944|gb|ADO42873.1| ATP-dependent protease ATP-binding subunit [Ketogulonicigenium vulgare Y25] Length = 422 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +PREI + LD Y+IGQ AKR +++A+ N ++R A +E L NILL+GPTG G Sbjct: 65 TPREICAVLDDYVIGQVHAKRVLSVAVHNHYKRLNHAAKSNNEIELAKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 239 DTTNILFICGGAFAGLERIIAQRSKGQGMGFNANVREVDERGVGELFMELEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+ ILT+ ++ L+ QY+ L E + L FTED++ A+A Sbjct: 299 IPEFVGRLPVIATLTDLDVDALIQILTEPKNALVKQYQRLFDIEAVKLTFTEDALKAIAS 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+ + GAR L+++ME +L D F L+ + V+ E LH Sbjct: 359 KAIERKT-----GARGLRSIMEGILLDTMFELPGLETVSEVVVNEDAVLH 403 >gi|288800854|ref|ZP_06406311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella sp. oral taxon 299 str. F0039] gi|288332315|gb|EFC70796.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella sp. oral taxon 299 str. F0039] Length = 417 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ DAKR +A+A+ N ++R AD E+ NI++VG TG GKT Sbjct: 74 PQEIKKYLDQYIIGQDDAKRYLAVAVYNHYKRLNQSADDDGVEIEKSNIIMVGSTGTGKT 133 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 134 LLARTIAKLLKVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 176 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 186 GIVFIDEIDKIARKADNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 245 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 246 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNLRNVDKEDLMKYILPQDLKSFGLI 305 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV HL LN+ R IL + +++++ QY++L +GI L+F +D + D Sbjct: 306 PEIIGRLPVLTHLNPLNREALRRILVEPKNSIVKQYEKLFAMDGIKLEFDTAVLDYVVDK 365 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D F ++K+ + +Y + HI Sbjct: 366 AVEYK-----LGARGLRSIVEAMMIDAMFEVPSSKKKSFKVTLDYAQKHI 410 >gi|163753151|ref|ZP_02160275.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1] gi|161326883|gb|EDP98208.1| ATP-dependent protease ATP-binding subunit [Kordia algicida OT-1] Length = 410 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT++ILFIA GAF ++R P DL + Sbjct: 234 NTENILFIAGGAFDGIDRVITRRLNMQAVGYSASKDEEAIDTDNLLQYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ + R ILT+ ++ +I QYK+L + + I D TE +++ + + Sbjct: 294 PEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFEMDSIEFDITEGALEFIVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F EK + I Y Sbjct: 354 AIQYK-----LGARGLRSLCETILTDAMFDLPGSDEKELKITKTY 393 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P++I + LD +IIGQ K+ +++A+ N ++R Q P E+ NI++VG TG GKT Sbjct: 62 PKQIKAFLDEFIIGQGATKKVMSVAVYNHYKRLLQAPTKDDIEIQKSNIIMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|294788440|ref|ZP_06753683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella muelleri ATCC 29453] gi|294483871|gb|EFG31555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Simonsiella muelleri ATCC 29453] Length = 419 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 75/113 (66%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGK 66 +P E+V++L+ ++IGQ+ AK+++A+A+ N ++R P + + EL NILL+GPTG GK Sbjct: 65 TPAELVAQLNDHVIGQELAKKSLAVAVYNHYKRLNTPVEEGKVELSKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR PF + T TE GYVG +VEQII L++ V +++R Sbjct: 125 TLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLLNKCDGDVAKAQR 177 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 62/243 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S K+ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTLASVPPQGGRRNPNQKFIDV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 238 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENINVTELFESVEPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG L+F D++ ++A Sbjct: 298 LIPELIGRLPVIATLEELDEAALVNILTEPKNALVKQYQALFAMEGAQLEFEHDALVSIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431 +A+ + GAR L++++ER L D + DL++ V+ V + D+ + Sbjct: 358 KLAMKRKT-----GARGLRSIVERALLDTMYRLPDLKDVAKVV----VTQSVIDYETPPK 408 Query: 432 MYH 434 MYH Sbjct: 409 MYH 411 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] gi|254039948|gb|ACT56744.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ AK+ +A+A+ N ++R + + EL NILLVGPTG GK Sbjct: 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFHV------------------------SRPAD---------------L 312 +T +ILFI GAF +RP L Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ IL++ ++ LI QY+ L E + L F ED++ +A Sbjct: 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E++L D F L+ + VI Sbjct: 360 CAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVI 396 >gi|58580657|ref|YP_199673.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622590|ref|YP_449962.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710929|ref|ZP_02242136.1| ATP-dependent protease ATP-binding subunit [Xanthomonas oryzae pv. oryzicola BLS256] gi|81311961|sp|Q5H433|CLPX_XANOR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123522986|sp|Q2P6Y9|CLPX_XANOM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|58425251|gb|AAW74288.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366530|dbj|BAE67688.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 428 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + D EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L EG+ L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|300691405|ref|YP_003752400.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] gi|299078465|emb|CBJ51117.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|168186117|ref|ZP_02620752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum C str. Eklund] gi|169296071|gb|EDS78204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum C str. Eklund] Length = 431 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ AK+A+A+A+ N ++R D+ D EL NILL+GPTG GKT Sbjct: 63 PSEIKNYLDDYVIGQDSAKKALAVAVYNHYKRINSDVDVDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LARL PF + T TE GYVG +VE I+ L+ A + ++ R Sbjct: 123 LLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAER 174 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF S P DLL Sbjct: 235 NTSNILFICGGAFDGLDKIIEKRTRKSSLGFGSDVQSKDEKDIGELLKESVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+ IL + ++ L+ QYK+L+ + + L+F ++++ ++AD Sbjct: 295 IPEFIGRLPIMVTLQSLDNDALVKILKEPKNALVKQYKKLLLMDNVELEFEDEALKSIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E + DI F S K V+I+ + ++ Sbjct: 355 EAIERKT-----GARGLRSIIEETMRDIMFDIPSQFNIKKVIINKDTIK 398 >gi|241663133|ref|YP_002981493.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia pickettii 12D] gi|309781949|ref|ZP_07676680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp. 5_7_47FAA] gi|240865160|gb|ACS62821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia pickettii 12D] gi|308919293|gb|EFP64959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia sp. 5_7_47FAA] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFH----------------------------VSR------PADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKTGIGFGAEVQSKEERDVSEVLPQVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|332305575|ref|YP_004433426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172904|gb|AEE22158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Glaciecola agarilytica 4H-3-7+YE-5] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI S LD Y+IGQ+ AK+ +++A+ N ++R + D+ D EL NILL+GPTG G Sbjct: 67 TPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLMGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAHTGTGIGFGSAIKDISNKSKEGELLKKVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ L++ IL + +++L QY L E L+F +D++ A+ Sbjct: 300 GLIPEFIGRLPVLTSLEELSEEALIQILREPKNSLTKQYAALFSLEDTELEFRDDALQAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL D + + VV+D +R Sbjct: 360 AKKAMSRKT-----GARGLRSIVEAVLLDTMYELPSMSNVSKVVVDETVIR 405 >gi|188578370|ref|YP_001915299.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae PXO99A] gi|238689531|sp|B2SMI2|CLPX_XANOP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|188522822|gb|ACD60767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthomonas oryzae pv. oryzae PXO99A] Length = 428 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + D EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGVKVKSSERKQEVGKILAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L EG+ L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|83745914|ref|ZP_00942971.1| ClpX [Ralstonia solanacearum UW551] gi|300703973|ref|YP_003745575.1| ATPase and specificity subunit of clpx-clpp ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] gi|83727604|gb|EAP74725.1| ClpX [Ralstonia solanacearum UW551] gi|299071636|emb|CBJ42960.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 +T +ILFI GAF SR P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKSGIGFGAEVKSREERDVNEVLPQVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|21241839|ref|NP_641421.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas axonopodis pv. citri str. 306] gi|78046638|ref|YP_362813.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289664184|ref|ZP_06485765.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668775|ref|ZP_06489850.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294627914|ref|ZP_06706493.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666561|ref|ZP_06731802.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325914925|ref|ZP_08177257.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas vesicatoria ATCC 35937] gi|325927442|ref|ZP_08188689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas perforans 91-118] gi|23813860|sp|Q8PNI4|CLPX_XANAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123585731|sp|Q3BWQ0|CLPX_XANC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21107219|gb|AAM35957.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78035068|emb|CAJ22713.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292597828|gb|EFF41986.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603705|gb|EFF47115.1| ATP-dependent protease ATP-binding subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325538818|gb|EGD10482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas vesicatoria ATCC 35937] gi|325542192|gb|EGD13687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas perforans 91-118] Length = 428 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + D EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDDVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L EG+ L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|187928949|ref|YP_001899436.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia pickettii 12J] gi|238691846|sp|B2UFQ3|CLPX_RALPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|187725839|gb|ACD27004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ralstonia pickettii 12J] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFH----------------------------VSR------PADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKIIMQRSDKTGIGFGAEVQSKEERDVSEVLPQVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ + A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSGLTAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|17546431|ref|NP_519833.1| ATP-dependent protease ATP-binding subunit [Ralstonia solanacearum GMI1000] gi|21263463|sp|Q8XYP6|CLPX_RALSO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|17428729|emb|CAD15414.1| probable atp-dependent clp protease atp-binding subunit clpx protein [Ralstonia solanacearum GMI1000] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 169 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------L 312 +T +ILFI GAF +++ +D L Sbjct: 242 DTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGL 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L+++ IL + ++ ++ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + + + VVID Sbjct: 362 KAIKRKT-----GARGLRSIVEHALMDVMYDLPNHKGVQKVVID 400 >gi|308050307|ref|YP_003913873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas balearica DSM 9799] gi|307632497|gb|ADN76799.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ferrimonas balearica DSM 9799] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + D + EL NILL+GPTG GK Sbjct: 68 TPHEIRAHLDEYVIGQEQAKKVLAVAVYNHYKRLRHGGDEAEVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 180 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH----------------------------------VSR--PADL--- 312 +T ILFI GAF +R P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRAFTGTGIGFGAEVRSKDDGKSLTETFARVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L EG+ L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVVATLGELDEDALIQILQEPKNALTKQYGALFDLEGVELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + Q+ VV+D ++ Sbjct: 361 ARKAMERKT-----GARGLRSIVEGVLLDTMYDLPSAQDVSKVVVDESVIK 406 >gi|326565912|gb|EGE16073.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 103P14B1] gi|326575438|gb|EGE25363.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 101P30B1] Length = 438 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ + Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|194289505|ref|YP_002005412.1| ATP-dependent protease ATP-binding subunit clpx [Cupriavidus taiwanensis LMG 19424] gi|238692761|sp|B3R4W2|CLPX_CUPTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|193223340|emb|CAQ69345.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Cupriavidus taiwanensis LMG 19424] Length = 425 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRESLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 61/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVKSKEERDVSEVLPQTEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMQILVEPKNALVKQYQKLLAMEGVELEIRPGALSAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L++++E+ L D+ + + + + VVID + GD P Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVIDENTIN---GDAP 409 >gi|114707245|ref|ZP_01440143.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] gi|114537441|gb|EAU40567.1| ATP-dependent protease ATP-binding subunit [Fulvimarina pelagi HTCC2506] Length = 422 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+EI++ LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 65 SPQEIIAVLDDYVIGQAYAKKVLSVAVHNHYKRLAHASKNNDVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTANILFICGGAFAGLDRIISDRGRKTSIGFAANVEAPDERKSGELFRQVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL + ++ L+ QY+ L + E + L F ED++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEAALVQILREPKNALVKQYQRLFEMESVQLTFQEDALGAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+++ME +L D F L+ Sbjct: 358 KAIERKT-----GARGLRSIMEAMLLDTMFDLPTLE 388 >gi|171913851|ref|ZP_02929321.1| ATPase AAA-2 domain protein [Verrucomicrobium spinosum DSM 4136] Length = 542 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 9/117 (7%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMP 53 L F + P +I + LDR++I Q DAK+ +A A+ + + ++ ++R E Sbjct: 67 LDFRYRPADIKAYLDRFVIRQDDAKKVLATAVCDHYNHARMLREMRRRDPKAADEVEFAK 126 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +N+++VGPTGVGKT + + +A L G PF+K + TKF+E GYVG +V+ ++RDLV A Sbjct: 127 QNVIIVGPTGVGKTYLVKHIADLIGVPFVKADATKFSETGYVGADVDDLVRDLVTKA 183 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 65/258 (25%) Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 D D + D+ T +I + E +GI++LDE DK+ G V+ GVQ LL L+E Sbjct: 171 DVDDLVRDLVTKANGNIDLAE-HGIIYLDEVDKLATAGDRPGRDVNGRGVQTTLLKLMEE 229 Query: 282 SSVSTKYGS----------------------INTDHILFIASGAF--------------- 304 + VS + +NT ++LF+ SGAF Sbjct: 230 TEVSLHAPNDMRSQIQMMFEMRKGDAPRRQVVNTRNVLFVVSGAFSGLEKIIERRVSKGS 289 Query: 305 -----------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 ++R D + E GR PVRV SL D I+ +E Sbjct: 290 IGFGAAVREDVISGTPLRLARTQDFIDYGFEAEFIGRLPVRVVCDSLTADDLFDIMKSSE 349 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +LI Q++ + GI F + ++ A A + GAR L TV E+ L D F Sbjct: 350 GSLIRQFEREFQAYGIHATFDDSALRVKARQAAEEKT-----GARGLMTVWEKSLRDFKF 404 Query: 403 SASDLQEKTVVIDAEYVR 420 L K +++D +R Sbjct: 405 ELPSLGLKELLVDETLLR 422 >gi|194364615|ref|YP_002027225.1| ATP-dependent protease ATP-binding subunit ClpX [Stenotrophomonas maltophilia R551-3] gi|238693450|sp|B4SLN2|CLPX_STRM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|194347419|gb|ACF50542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stenotrophomonas maltophilia R551-3] Length = 429 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQNRAKRTLAVAVYNHYKRIESRQKNDEVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSAERKQEVGKVLAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L + E + L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMENVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 ARKALKRKT-----GARGLRTIVESVLLDTMYDLPSQENVSKVVVDESVIEH 407 >gi|294678130|ref|YP_003578745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodobacter capsulatus SB 1003] gi|294476950|gb|ADE86338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter capsulatus SB 1003] Length = 424 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+I LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPRDICKVLDDYVIGQMHAKRVLSVAVHNHYKRLNHGSKQDVELAKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 58/236 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFHV------------------------SR----------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 237 DTTNILFICGGAFAGLDRIIAQRGKGSAIGFGADVKDPESRGAGELFKELEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTPDAMKAIAA 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L+++ME +L D F ++ + VV++ E V + G P Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGMEGVREVVVNDEAVEMANGAKP 407 >gi|326577945|gb|EGE27809.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis O35E] Length = 438 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ + Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|326576474|gb|EGE26382.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis CO72] Length = 438 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ + Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|299535609|ref|ZP_07048930.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus fusiformis ZC1] gi|298728809|gb|EFI69363.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus fusiformis ZC1] Length = 423 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R + + D EL NI+L+GPTG GKT Sbjct: 64 PKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDIELAKSNIVLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFIVGGAFDGIETIIKRRQGEKVIGFGSDPNIVDVDEGSIMSKLIPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ LN++ ILT+ ++ L QY+++++ +G+ L+F ED++ A+A Sbjct: 296 PEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEDALVAIAKE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E + D+ + ++ K +I A+ + Sbjct: 356 AIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTI 397 >gi|126653683|ref|ZP_01725602.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905] gi|169829419|ref|YP_001699577.1| ATP-dependent protease ATP-binding subunit ClpX [Lysinibacillus sphaericus C3-41] gi|238688198|sp|B1HVE5|CLPX_LYSSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126589720|gb|EAZ83855.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. B14905] gi|168993907|gb|ACA41447.1| ATP-dependent Clp protease ATP-binding subunit [Lysinibacillus sphaericus C3-41] Length = 423 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI++ LD Y+IGQ+ AK+A+A+A+ N ++R + + D EL NI+L+GPTG GKT Sbjct: 64 PKEILTILDEYVIGQERAKKALAVAVYNHYKRINTNSKIDDVELAKSNIVLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFIVGGAFDGIESIIKRRQGEKIIGFGSDPNIVDVDEGSIMSKLIPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ LN++ ILT+ ++ L QY+++++ +G+ L+F E ++ +A Sbjct: 296 PEFIGRLPVLASLEQLNEAALVQILTEPKNALAKQYQKMLELDGVELEFDEGALAEIAKE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E + D+ + ++ K +I A+ + Sbjct: 356 AIERKT-----GARGLRSIIESTMLDVMYELPSREDVKKCIITAKTI 397 >gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] gi|300074679|gb|ADJ64078.1| ATP-dependent protease (ATP-binding specificity subunit) protein [Herbaspirillum seropedicae SmR1] Length = 421 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEITELLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADL----- 312 +T +I+FI GAF + P DL Sbjct: 240 DTTNIMFICGGAFDGLARIISDRSEKSGIGFSASVKSQTQKSNSEVLLNAEPEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ IL + ++ LI QY +L++ EG L+ ++ A+A Sbjct: 300 IPELVGRLPVIATLNELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A+ + GAR L++++E L D+ + S+ VV+D Sbjct: 360 KALARKT-----GARGLRSILEHALLDVMYELPSEQNVAKVVVD 398 >gi|126663139|ref|ZP_01734137.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria bacterium BAL38] gi|126624797|gb|EAZ95487.1| ATP-dependent Clp protease, ATP-binding subunit [Flavobacteria bacterium BAL38] Length = 410 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PAD-----LL 313 NT +ILFIA GAF H+ + P D L+ Sbjct: 234 NTQNILFIAGGAFDGIERIISKRLNRQAVGYSSSIGTDHIDKDNLLQYLIPKDVKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ + R ILT+ ++ L+ QYK+L + + + L+ E++++ + Sbjct: 294 PEIIGRLPVLTHMDPLDAATLRAILTEPKNALVKQYKKLFEMDEVTLEIEEEALNYIVSK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D + ++K + ++ EY Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSEDKHLQVNKEY 393 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 P+EI + LD Y+IGQ K+ +++A+ N ++R Q+ + E+ NIL+VG TG G Sbjct: 60 LKPKEIRAFLDDYVIGQDQTKKVMSVAVYNHYKRLMQIQLEDEVEIEKSNILMVGQTGTG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 120 KTLVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|261855008|ref|YP_003262291.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Halothiobacillus neapolitanus c2] gi|261835477|gb|ACX95244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halothiobacillus neapolitanus c2] Length = 434 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 13/113 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------------ELMPK 54 +P+E+V LD Y+IGQQ AKRA+A+A+ N ++R L R EL Sbjct: 63 TPKELVEALDEYVIGQQRAKRALAVAVYNHYKRLNLFGSTRKVAEKDKDSDSEPVELSKS 122 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I++ L+ Sbjct: 123 NILLIGPTGSGKTLLAQTLARVLDVPFAIADATTLTEAGYVGEDVENILQKLL 175 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 103/232 (44%), Gaps = 59/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 186 QHGIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTQASVPPQGGRKHPQQEFV 245 Query: 290 SINTDHILFIASGAFHV-------------------------SRPAD------------- 311 ++T +ILFI GAF R AD Sbjct: 246 QLDTTNILFICGGAFSGLDSIIRQRIEKGGIGFSAEVKSKDDKRAADELLTQIESEDLTR 305 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 L+PE GR PV L L+++ IL + ++ L QY L + EG+ LD ED++ Sbjct: 306 YGLIPEFIGRLPVIATLNELDEAALVKILVEPKNALTKQYMRLFEMEGVELDLREDALRE 365 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A A+ + GAR L+T++E VL D F + + VV+DA VR Sbjct: 366 VARQAIKRKT-----GARGLRTIVEHVLLDTMFDVPSTENVQKVVVDASVVR 412 >gi|218128448|ref|ZP_03457252.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697] gi|217989339|gb|EEC55652.1| hypothetical protein BACEGG_00016 [Bacteroides eggerthii DSM 20697] Length = 414 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYIKLFEMDGVELTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D+ F +K++V+ +Y R Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEVPSEHKKSLVVTLDYAR 400 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P EI + LD+YIIGQ DAKR +A+++ N ++R Q D E+ NI++VG TG GKT Sbjct: 67 PVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178 >gi|313668518|ref|YP_004048802.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica ST-640] gi|313005980|emb|CBN87437.1| ATP-dependent Clp protease ATP-binding subunit [Neisseria lactamica 020-06] Length = 414 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P A EL NILL+GPTG GK Sbjct: 66 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKAGDNVELSKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 126 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 166 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 238 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 239 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 299 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DLQ K VV+ Sbjct: 359 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLQGLKKVVV 397 >gi|281421758|ref|ZP_06252757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella copri DSM 18205] gi|281404253|gb|EFB34933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella copri DSM 18205] Length = 409 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 233 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 234 DTKNILFICGGAFDGIERKIAQRMNTHVVGYNSVQNVAKIDKKDLMQYILPQDLKSFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + +++++ QY++L + +GI L F E+++D + D Sbjct: 294 PEIIGRLPVLTYLNPLDREALRKILVEPKNSIVKQYQKLFEMDGIKLKFDEEALDYIVDK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E V+ D F + K+ + EY + + Sbjct: 354 AVEYK-----LGARGLRSIVEAVMMDAMFEIPSEKVKSFTVTLEYAKQQL 398 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD YIIGQ AKR +A+A+ N ++R Q P D E+ NI++VG TG GKT Sbjct: 62 PVEIKKYLDEYIIGQDQAKRNLAVAVYNHYKRLQQPKDEDGVEIEKSNIIMVGSTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A++ PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 122 LLARTIAKMLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 164 >gi|317475726|ref|ZP_07934985.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA] gi|316908109|gb|EFV29804.1| ATP-dependent Clp protease [Bacteroides eggerthii 1_2_48FAA] Length = 414 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYIKLFEMDGVELTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D+ F +K++V+ +Y R Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEVPSEHKKSLVVTLDYAR 400 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P EI + LD+YIIGQ DAKR +A+++ N ++R Q D E+ NI++VG TG GKT Sbjct: 67 PVEIKNFLDQYIIGQDDAKRFLAVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVAEAEQ 178 >gi|326563260|gb|EGE13527.1| ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis 46P47B1] Length = 438 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E+ + LD Y+IGQ AK+A+A+A+ N ++R ++ D +D EL NILL+GPTG Sbjct: 89 PKELRAHLDDYVIGQDVAKKALAVAVYNHYKRLKVANDKKDTDGVELSKSNILLIGPTGS 148 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I++ L+ + Sbjct: 149 GKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 194 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 204 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPRQEMIQV 263 Query: 292 NTDHILFIASGAF------------------HVSRPAD---------------------L 312 +T +IL I GAF H A L Sbjct: 264 DTSNILMIVGGAFAGLDKVIRQRTEKTGIGFHADVKAQDESSITELFREVEAEDLIKFGL 323 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+++ ILT+ ++ L+ QY+ L EG+ L F +++ A+A Sbjct: 324 IPELIGRLPVIASLEELDEAALVQILTEPKNALVKQYQYLFDMEGVQLTFEPEALTAIAK 383 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L++++E L D + S +D+ E Sbjct: 384 RAQERKT-----GARGLRSIIENALMDTMYELPSMTDIAE 418 >gi|71083580|ref|YP_266299.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Pelagibacter ubique HTCC1062] gi|71062693|gb|AAZ21696.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1062] Length = 422 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ AK+ +++A+ N ++R EL NILLVGPTG GK Sbjct: 62 PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 62/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGANVKKTDDKKTGEWMKTLEPEDLLKYGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L++ IL + +++LI QY+EL K +G L F E++I +A Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENAIKEIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+N + GAR L++++E +L + S +++E V++DA + Sbjct: 355 KAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDASAAK 398 >gi|91761999|ref|ZP_01263964.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1002] gi|91717801|gb|EAS84451.1| ATP-dependent clp proteinase regulatory chain X [Candidatus Pelagibacter ubique HTCC1002] Length = 422 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ AK+ +++A+ N ++R EL NILLVGPTG GK Sbjct: 62 PKEICAVLDDYVIGQPHAKKVLSVAVHNHYKRLNYETKTSKTVELSKSNILLVGPTGCGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 122 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 62/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 175 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 235 DTTNILFICGGAFAGLDKIISQRDKGTSIGFGANVKKTDDKKTGEWMKTLEPEDLLKYGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L++ IL + +++LI QY+EL K +G L F E++I +A Sbjct: 295 IPEFIGRLPMIATLEDLDEKSLVKILQEPKNSLIKQYQELFKLDGAKLSFKENAIKEIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+N + GAR L++++E +L + S +++E V++DA + Sbjct: 355 KAINKKT-----GARGLRSILENILLKTMYDLPSQDNVEE--VIVDASAAK 398 >gi|319408365|emb|CBI82018.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella schoenbuchensis R1] Length = 424 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P+EI++ LD Y+IGQ+ AKR +++A+ N ++R Q D+ EL NILLVGPTG Sbjct: 67 TPQEILTVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNGDI--ELSKSNILLVGPTGC 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 GKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H P DL Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATVKAPDERRVGEIFHDLEPEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ + IL+ ++ L+ QYK L + E + L F ED++ +A+ Sbjct: 300 IPEFIGRLPIIATLEDLDINALVQILSQPKNALVKQYKRLFEMENVELTFHEDALRVIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L D F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLDTMFELPTLEGVQKVVISSDVV 402 >gi|259503088|ref|ZP_05745990.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041] gi|259168954|gb|EEW53449.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041] Length = 416 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 4/113 (3%) Query: 2 KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNIL 57 K TF +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R + + D EL NI Sbjct: 56 KQTFRVPTPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENNDTELQKSNIA 115 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++GPTG GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 116 VIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTSNILFIVGGAFDGIENIVKERIGEKTIGFGTSSSARDNITEKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL+K +G L FT+ ++ A+A Sbjct: 297 LIPEFIGRLPVMTALQKLDEQDLIRILTEPKNALVKQYQELIKLDGSELSFTDGALRAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A+ N+ GAR L++++E V++D+ F Sbjct: 357 ELAIKRNT-----GARGLRSIIEEVMQDVMF 382 >gi|260575567|ref|ZP_05843565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter sp. SW2] gi|259022210|gb|EEW25508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacter sp. SW2] Length = 421 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+I LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GKT Sbjct: 65 TPRDICKVLDDYVIGQIHAKRVLSVAVHNHYKRLNHSSKTDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 57/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 237 DTTNILFICGGAFSGLEKIIAQRNKGSAIGFGAEVKGPEDRGVGELFKELEPEDLLKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L+++ ILT+ ++ L+ QY+ L + EG+ L FT D++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVTLTFTPDALVAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 A+ + GAR L+++ME +L D F + T V+ E Sbjct: 357 RAIKRKT-----GARGLRSIMEDILLDTMFELPGMAGVTEVVVKE 396 >gi|332529293|ref|ZP_08405255.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella gracilis ATCC 19624] gi|332041210|gb|EGI77574.1| ATP-dependent protease ATP-binding subunit ClpX [Hylemonella gracilis ATCC 19624] Length = 421 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ AKR +A+A+ N ++R Q R EL NILL+GPTG Sbjct: 67 TPAEIKANLDNYVIGQDAAKRTLAVAVYNHYKRLQHKETARKDEVELAKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR PF+ + T TE GYVG +VE II L+ V +++R Sbjct: 127 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIAKLLQNCNYEVEKAQR 181 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFIQV 241 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF + R P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIERRTESSGIGFGAAVKSKTQRSLTEVFKEVEPEDLIKYGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVATLAELSEDALVQILTEPKNALVKQYAKLFGMEGVELEIRPTALAAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 S GAR L+++ME+ L D F L + VV+D + H Sbjct: 362 -----KSLARKTGARGLRSIMEQSLIDTMFDLPTLSNVEKVVVDESTIEEH 407 >gi|289550569|ref|YP_003471473.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus lugdunensis HKU09-01] gi|315658064|ref|ZP_07910936.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus lugdunensis M23590] gi|289180101|gb|ADC87346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus lugdunensis HKU09-01] gi|315496393|gb|EFU84716.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus lugdunensis M23590] Length = 420 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI++ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMAHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L++L+ + ILT ++ L+ QY ++++ + + L+FT+D++ A+++ A Sbjct: 297 EFIGRVPVVANLETLDVKALKNILTQPKNALVKQYTKMLELDNVDLEFTDDALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L +I + Sbjct: 357 IERKT-----GARGLRSIIEEALINIMY 379 >gi|282880881|ref|ZP_06289574.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella timonensis CRIS 5C-B1] gi|281305263|gb|EFA97330.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella timonensis CRIS 5C-B1] Length = 414 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ DAKR +++++ N ++R Q P + E+ NI++VG TG GKT Sbjct: 68 PKEIKKYLDDYIIGQDDAKRYLSVSVYNHYKRLQQPKNEDGVEIEKSNIIMVGSTGTGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +ARL PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 128 LLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 170 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ Y + Sbjct: 180 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHV 239 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 240 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRNIDKGDLMKYILPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+K R IL + +++++ QY +L + +GI L F +++D + D Sbjct: 300 PEIIGRLPVLTYLNPLDKEALRKILVEPKNSIVKQYIKLFEMDGIQLTFANEALDFIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + K+ + +Y + Sbjct: 360 AVEYK-----LGARGLRSIVESMMMDAMFEIPSKRTKSFEVTLDYAQ 401 >gi|119953394|ref|YP_945603.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia turicatae 91E135] gi|119862165|gb|AAX17933.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia turicatae 91E135] Length = 435 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 4/106 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R + RD EL NILLVGPTG Sbjct: 70 TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRI-FKGNKRDNGVELEKSNILLVGPTGS 128 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++++LA PF + T TE GYVG +VE I+ L+ A Sbjct: 129 GKTLLAKKLAAEMNVPFAMADATTLTEAGYVGEDVENILLKLIHAA 174 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V K G I Sbjct: 184 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPKGGRKHPYECTIEI 243 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 244 NTQNILFICGGAFVGLENIIKKRINKSSIGFSSAGRKDSGEINSLKYLEMEDLVKFGLIP 303 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ L K D IL + E++++ QY + K + + L F D++DA+A+ A Sbjct: 304 EFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYCHMFKMDNVDLLFERDALDAIAEEA 363 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F S Q K V++ E V Sbjct: 364 MLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 404 >gi|288941152|ref|YP_003443392.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Allochromatium vinosum DSM 180] gi|288896524|gb|ADC62360.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Allochromatium vinosum DSM 180] Length = 419 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI ++LD ++IGQ+ AK+ +++A+ N ++R ++ D E+ NILL+GPTG GKT Sbjct: 63 PREINAKLDEFVIGQEKAKKVLSVAVYNHYKRLEVAEAKEDIEIAKSNILLIGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 162 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 175 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 235 DTSNILFIVGGAFAGLDKVIQNRSKKTGIGFSAEVQSKDDSRQISELLSAVEPEDLIRYG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ LILT+ + L+ QY L + EG+ L+ +D++ ++ Sbjct: 295 LIPEFVGRLPVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDALREIS 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+T+ME+VL D + + VVIDA + Sbjct: 355 RKAMERKT-----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVI 398 >gi|160882387|ref|ZP_02063390.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483] gi|237719060|ref|ZP_04549541.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4] gi|260172006|ref|ZP_05758418.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp. D2] gi|299148143|ref|ZP_07041205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_23] gi|315920319|ref|ZP_07916559.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2] gi|156112200|gb|EDO13945.1| hypothetical protein BACOVA_00336 [Bacteroides ovatus ATCC 8483] gi|229451439|gb|EEO57230.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 2_2_4] gi|298512904|gb|EFI36791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_23] gi|313694194|gb|EFS31029.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D2] Length = 414 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +GI L F +D + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y ++ + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKEYKVTLDYAKMQL 403 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178 >gi|124266486|ref|YP_001020490.1| ATP-dependent protease ATP-binding subunit ClpX [Methylibium petroleiphilum PM1] gi|166214784|sp|A2SFB6|CLPX_METPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|124259261|gb|ABM94255.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Methylibium petroleiphilum PM1] Length = 423 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ+ AKR +A+A+ N ++R Q + EL NILL+GPTG Sbjct: 69 PGEIKASLDQYVIGQEPAKRTLAVAVYNHYKRLKHVQGVGKKEDVELAKSNILLIGPTGS 128 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 GKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 171 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G I Sbjct: 184 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 243 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 244 DTTNILFICGGAFDGLEKVIQNRSEKSGIGFGASVQSKTERKVSEVFREVEPEDLIKFGL 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY++L +G+ L+ ++ A+A Sbjct: 304 IPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFAMDGVELEIRPSALTAIAQ 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A+ + GAR L+++ME L D F + + VV+D + H Sbjct: 364 KALARKT-----GARGLRSIMEHSLMDTMFDLPTMDGVQKVVLDEHTIEEH 409 >gi|260909475|ref|ZP_05916179.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260636400|gb|EEX54386.1| ATP-dependent Clp protease ATP-binding subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 410 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ Y + Sbjct: 176 GIVFVDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTTVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + ++++I QY++L K +GI L F +++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATETLDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ D F + K+ + +Y R Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKSFDVTLQYAR 397 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67 P +I + LD+YIIGQ +AKR +++++ N ++R + P D E+ NI++VG TG GKT Sbjct: 64 PMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 >gi|332291466|ref|YP_004430075.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169552|gb|AEE18807.1| Sigma 54 interacting domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 410 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313 +T++ILFIA GAF H+S+ P DL + Sbjct: 234 DTENILFIAGGAFDGIERHISKRLNMQAMGFVASKSEDVVEKDNMLKYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ R ILT+ ++ +I QYK+L + I L T++++D + Sbjct: 294 PEIIGRLPVLTHMDPLDAGTLRAILTEPKNAIIKQYKKLFSMDDIELTITDEALDYMVGK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F EK++ + Y Sbjct: 354 AIEYK-----LGARGLRSLCEAILTDAMFDLPSSDEKSLNVTKTY 393 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ+ KR +++A+ N ++R PA D E+ NI++VG TG GKT Sbjct: 62 PQEIKEFLDGYVIGQEFTKRVMSVAVYNHYKRLLQPATDDDIEIQKSNIVMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 I++ +AR+ P V+ T TE GYVG +VE I+ L+ A + +++R Sbjct: 122 LIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173 >gi|269125775|ref|YP_003299145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermomonospora curvata DSM 43183] gi|268310733|gb|ACY97107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermomonospora curvata DSM 43183] Length = 425 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 PREI LD Y+IGQ+ AK+A+++A+ N ++R Q RD EL NILL+GPTG G Sbjct: 64 PREIYEFLDSYVIGQEAAKKALSVAVYNHYKRIQSGDSGRDDSVELAKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTLLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 59/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAFH-------------------VSR----------------PADLL--- 313 +T ++LFI GAF V R P DLL Sbjct: 238 DTTNVLFICGGAFAGLEKIIEARIGKQGMGFGAVIRSKDEASSSSDILSQIMPEDLLKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV ++ +L++ ILT+ ++ L+ QYK L + +G+ L+FT D+++A+A Sbjct: 298 MIPEFVGRLPVITNVHNLDRDALIAILTEPKNALVKQYKRLFELDGVELEFTPDALEAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 D A+ L T GAR L+ +ME VL + + Q+ VVI E V H+ Sbjct: 358 DQAI-LRGT----GARGLRAIMEEVLLSVMYEVPSRQDVARVVITREAVLEHV 405 >gi|326432268|gb|EGD77838.1| ATP-dependent protease ATP-binding subunit [Salpingoeca sp. ATCC 50818] Length = 603 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 59/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIVFLDE DKI + SG+G+ VS EGVQ+ LL L+EG+ +V K G Sbjct: 345 GIVFLDEIDKI-SSISGSGVATRDVSGEGVQQALLKLLEGTVVNVPEKGGRKSPRGETIQ 403 Query: 291 INTDHILFIASGAFH-----------------------VSRPAD---------------- 311 I+T +ILFIASGAF+ ++P D Sbjct: 404 IDTSNILFIASGAFNGLEDLIKKREEKGSIGFNAALKTPNKPVDGQMLRKVQADDLVKFG 463 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFP VHL++L +SD +LT+ +++L+ QY+ L + E L F+ S+ A A Sbjct: 464 LIPEFVGRFPCVVHLEALTESDLVRVLTEPKNSLVSQYRALFRMENTDLVFSSSSLRAFA 523 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A++ + GAR L+T +E+VL Sbjct: 524 KKALDRKT-----GARGLRTFIEQVL 544 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 11/111 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 P+EI+ L+ Y+IGQ AK+ +A+A+ N ++R + A+L++ + NILL Sbjct: 227 PKEILDNLNDYVIGQDHAKKTLAVAVYNHYKR--VSANLKEASSSAAHDVQFEKSNILLA 284 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT ++R LA + PF + T T+ GYVG +VE ++ L+ Sbjct: 285 GPTGSGKTLLARTLANILNVPFAISDCTTLTQAGYVGEDVESVLYRLLQAC 335 >gi|323340666|ref|ZP_08080918.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus ruminis ATCC 25644] gi|323091789|gb|EFZ34409.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus ruminis ATCC 25644] Length = 410 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 7/123 (5%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNI 56 +LT +P+EIV L++Y+IGQ +AK+ +A+A+ N ++R + A L DE L NI Sbjct: 57 ELTDVLTPKEIVKTLNQYVIGQNEAKKTLAVAVYNHYKR--INAMLEDENEDTELQKSNI 114 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 L+GPTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A V Sbjct: 115 CLIGPTGSGKTYLAQSLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVER 174 Query: 117 SRR 119 ++R Sbjct: 175 AQR 177 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKILEGTIANVPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313 +T +ILFI GAF P DLL Sbjct: 238 DTTNILFIVGGAFDGIEKIVKNRLGDKTIGFGVEARKNYDESKSLMQQIIPEDLLKFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ L+ QY +L+ + L F +D++ +A + Sbjct: 298 PEFIGRLPIITALEKLTEDDLVRILTEPKNALVKQYAKLLSFDDCELVFEDDALREVARL 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A+ N+ GAR L++++E + D+ F SD VVI E V Sbjct: 358 AIERNT-----GARGLRSIIEATMRDVMFDVPSDKNIAKVVITKETV 399 >gi|257455805|ref|ZP_05621031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter aerosaccus SK60] gi|257446819|gb|EEV21836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enhydrobacter aerosaccus SK60] Length = 427 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 14/117 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53 +P+EI S LD Y+IGQ AK+ +A+A+ N ++R ++ L + EL Sbjct: 69 TPKEIRSHLDEYVIGQDKAKKTLAVAVYNHYKRLKVSEKLSEDKALTTLGAEDAMVELSK 128 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 129 SNILLIGPTGSGKTLLAQTLARLLDVPFALADATTLTEAGYVGEDVENIVQKLLQAA 185 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 195 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPNQEMIQV 254 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +IL I GAF P DL+ Sbjct: 255 DTSNILVICGGAFAGLDNVIQQRTEKTGIGFNAEVKAKDSGKKTGELFKQVEPEDLIKFG 314 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 315 LIPELIGRLPVVATLEELDEEALVQILTEPKNALVKQYEYLFEMENATLSFTDDALVAIA 374 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D + + KTV ++ Sbjct: 375 KQALKRRT-----GARGLRSIVENALLDTMYELPSMTPGKTVTVN 414 >gi|224476765|ref|YP_002634371.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus carnosus subsp. carnosus TM300] gi|254763863|sp|B9DNC0|CLPX_STACT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|222421372|emb|CAL28186.1| protease ClpX [Staphylococcus carnosus subsp. carnosus TM300] Length = 420 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ +L+ Y+IGQ AK+++++A+ N ++R QQL P D EL N+ L+GPTG G Sbjct: 63 TPKEIMDQLNNYVIGQDKAKKSLSVAVYNHYKRIQQLGPKDNEVELQKSNVALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 167 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEFIQI 236 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T +ILFI GAF H+ RP DL + Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEAAKYDESALLEHI-RPEDLQSYGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ +L++L+ + + ILT ++ L+ QYK++++ + + L+FTE+++ A+A+ Sbjct: 296 PEFIGRIPIVANLETLDIAALKNILTQPKNALVKQYKKMLELDHVELEFTEEALTAIAEK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 A+ + GAR L++++E L +I + +SD K V+ D Sbjct: 356 AIERKT-----GARGLRSIIEESLIEIMYDIPSSDDVAKVVITD 394 >gi|147677140|ref|YP_001211355.1| ATP-dependent protease ATP-binding subunit ClpX [Pelotomaculum thermopropionicum SI] gi|146273237|dbj|BAF58986.1| ATP-dependent protease Clp, ATPase subunit [Pelotomaculum thermopropionicum SI] Length = 427 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+++A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 72 PKEIKEILDQYVIGQESAKKSLAVAVYNHYKRINLGGKIDDVELQKSNIVMLGPTGSGKT 131 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 132 LLAQTLARLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 174 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 243 Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 244 DTTNILFICGGAFDGIEKIIMNRIGKKAMGFGAEIKARKELKIGEILSKILPEDLLKYGL 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L++ ILT+ + L+ QY++L + +G+ L+FT+D++ A+A+ Sbjct: 304 IPEFVGRLPIIVTLDALDEEALIRILTEPRNALVKQYEKLFELDGVTLEFTQDALKAVAE 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E V+ D+ + Sbjct: 364 EALKRNT-----GARGLRAILEEVMLDVMY 388 >gi|310829090|ref|YP_003961447.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium limosum KIST612] gi|308740824|gb|ADO38484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Eubacterium limosum KIST612] Length = 421 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PREI ++LD Y+I Q AKRA+A+A+ N ++R D D EL NI+L+GPTG G Sbjct: 62 TPREIKAKLDEYVISQHRAKRALAVAVYNHYKRINAMLDSDDDVELQKSNIILIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAQTLARVLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 166 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 176 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTSNILFICGGAFDGMDGVIERRMEKGSMGFSATIKTSDEKAKEELLDNIEPQDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L++L++ ILT+ ++ L+ QYK++ + EG+ L+F +D++ A+A+ Sbjct: 296 IPEFIGRIPVIATLQNLDEEALINILTEPKNALVKQYKKMFEIEGVALEFEKDALKAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N T GAR L+ ++E ++ DI F Sbjct: 356 KALQ-NGT----GARGLRGIIENIMTDIMF 380 >gi|293369499|ref|ZP_06616078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides ovatus SD CMC 3f] gi|292635384|gb|EFF53897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides ovatus SD CMC 3f] Length = 414 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +GI L F +D + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDDVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y ++ + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKEYKVTLDYAKMQL 403 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVSEAEQ 178 >gi|283781925|ref|YP_003372680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula staleyi DSM 6068] gi|283440378|gb|ADB18820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pirellula staleyi DSM 6068] Length = 428 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREIV+ LD+Y++GQ +KR +++A+ N ++R L + + E+ NIL+VGPTG GK Sbjct: 76 TPREIVAHLDQYVVGQMGSKRVLSVAMHNHYKRLSLGFEGSEVEIEKSNILMVGPTGSGK 135 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 136 TLLARTLARIMNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 70/234 (29%) Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286 G++++DE DKI + RD VS EGVQ+ LL ++EG+ + Sbjct: 189 GVLYIDEIDKIGKTSQNVSITRD------VSGEGVQQALLKMLEGTVANVPPQGGRKHPE 242 Query: 287 -KYGSINTDHILFIASGAF-------------------HVSRPAD--------------- 311 +Y ++T +ILFI G F ++ +D Sbjct: 243 QQYIQMDTTNILFICGGTFVGLEDIIRKRLGRKTLGFGQMTGHSDEATTSEILGQATTED 302 Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+PE+ GR PV L+ L+ + +LT+ ++ L+ QY+ L + E L+F++ + Sbjct: 303 ILEFGLIPELVGRLPVLTSLRPLDHAGLVKVLTEPKNALLRQYQTLFEMEDSHLEFSQGA 362 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 ++A+A A+ + GAR L++++E + DI F D + + VID E + Sbjct: 363 LEAIARRALEKGT-----GARGLRSIVEEAMVDIMFELPDQPKGSKFVIDEEVI 411 >gi|169831634|ref|YP_001717616.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Desulforudis audaxviator MP104C] gi|169638478|gb|ACA59984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Desulforudis audaxviator MP104C] Length = 417 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI LD+Y+IGQ+ AK+ +A+A+ N ++R L L D EL NI+++GPTG GKT Sbjct: 61 PREIKDYLDQYVIGQEYAKKILAVAVYNHYKRINLGGKLEDVELQKSNIVMLGPTGSGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 121 LLAQTLARFLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 163 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 173 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 232 Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313 +T +ILFI GAF V++ P DLL Sbjct: 233 DTTNILFICGGAFEGIDKIIQSRVAKKTMGFGAELTLKRDRKLGDILRNILPQDLLKYGL 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L LN+ D IL + + L+ QY++L + +G+ L+F E+++ A+A+ Sbjct: 293 IPEFVGRLPVIVTLDPLNQEDLVRILVEPRNALVKQYEKLFEIDGVALEFQEEALQAIAE 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 353 EAIRRNT-----GARGLRAILEEIMLNVMY 377 >gi|221194753|ref|ZP_03567810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium rimae ATCC 49626] gi|221185657|gb|EEE18047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium rimae ATCC 49626] Length = 435 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGP 61 +P EI EL +Y++GQ+DAKRA+++A+ N +RR + D E+ NILL+GP Sbjct: 78 TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPAEGDEDVEIAKSNILLLGP 137 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 186 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S I Sbjct: 196 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTEASVPPTGGRKHPQQELIHI 255 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312 +T +ILFI GAF HV+ P DL Sbjct: 256 DTTNILFICGGAFVGLDKIIADRIGKKGIGFNSHVAERFDQGESDLIAKVMPQDLHKFGM 315 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV + L + D ILT+ ++ L+ QY+ + + EG+ L+FT++++ ++ Sbjct: 316 IPELLGRIPVITSTRELGEDDLVSILTEPKNALVKQYRRMFELEGVDLEFTDEALREISR 375 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ + E L++ F SDL VV+ E V Sbjct: 376 KALERGT-----GARGLRAICESTLQETMFDLPSDLDITRVVVTPESV 418 >gi|325280714|ref|YP_004253256.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter splanchnicus DSM 20712] gi|324312523|gb|ADY33076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Odoribacter splanchnicus DSM 20712] Length = 404 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 170 GIVFIDELDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 229 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 230 NTKNILFICGGAFDGIEKKIAARMNTMVVGFNASQNTEKIDRENFLQYIAPQDLKSFGLI 289 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L+ L+++ R ILT+ ++ +I QY +L + +GI L F ED + + D Sbjct: 290 PEIIGRLPVLTYLEPLDRAALRNILTEPKNAIIRQYIKLFELDGITLKFDEDVYEYIVDK 349 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E ++ D+ F +K + I Y Sbjct: 350 AIEFR-----LGARGLRSICEAIMTDLMFEVPSQGKKNITITKAY 389 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ +AK+ +A+A+ N ++R A + E+ NI++VG TG GKT Sbjct: 58 PIEIKAFLDQYVIGQDEAKKHLAVAVYNHYKRLLHKAGNDEVEIEKSNIVMVGRTGTGKT 117 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A++ PF V+ T TE GYVG ++E I+ L+ A Sbjct: 118 LLARTIAKMLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAA 160 >gi|168335353|ref|ZP_02693448.1| ATP-dependent protease ATP-binding subunit [Epulopiscium sp. 'N.t. morphotype B'] Length = 420 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63 N +P+ I +LD Y+IGQ DAK+A+A+A+ N ++R D D EL NILL+GPTG Sbjct: 61 NLTPKMIKEKLDDYVIGQADAKKALAVAVYNHYKRINNVIDKNDGVELQKSNILLLGPTG 120 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +V I+ LV A Sbjct: 121 SGKTFLAQTLAKMLNVPFAIADATTLTEAGYVGEDVXNILLKLVQAA 167 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 60/227 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPHQEFLQL 236 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 +T +ILFI GAF VS+ P DLL Sbjct: 237 DTTNILFICGGAFDGIDKIIEKRTGEKTIGFGATVVSKKEKSIGELLKKLEPQDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P V L++L++ R ILT+ ++ +I QY +L K + + L+FT +++ +A Sbjct: 297 IPEFVGRVPAIVTLENLDEEALRRILTEPKNAIIKQYAKLFKFDDVKLEFTIEALAKVAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 +A++ + GAR L++++E V+ DI F S SD +K ++ +A Sbjct: 357 LAIDRQT-----GARGLRSILENVMRDIMFEIPSMSDTLDKVIISEA 398 >gi|238026974|ref|YP_002911205.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia glumae BGR1] gi|237876168|gb|ACR28501.1| ATP-dependent protease ATP-binding subunit [Burkholderia glumae BGR1] Length = 423 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDSGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELELRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397 >gi|167628598|ref|YP_001679097.1| ATP-dependent clp protease, ATP-binding subunit clpx [Heliobacterium modesticaldum Ice1] gi|238687890|sp|B0TFI7|CLPX_HELMI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167591338|gb|ABZ83086.1| ATP-dependent clp protease, ATP-binding subunit clpx [Heliobacterium modesticaldum Ice1] Length = 420 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+A+++A+ N ++R L + + D EL NI+++GPTG GKT Sbjct: 65 PKEIREILDQYVIGQEQAKKALSVAVYNHYKRINLGSKIDDIELQKSNIIMLGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 236 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF ++R P DLL Sbjct: 237 DTTNILFICGGAFDGIEKLIMNRIGKKTMGFNADIKGKQEKKIGETLREILPVDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT+ ++ L+ QY++ + + + L+FT+D++ A+A Sbjct: 297 IPEFVGRLPVIVTLDALDEDALVRILTEPKNALVKQYQKFFELDQVQLEFTDDALRAIAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E V+ D+ + Sbjct: 357 EAIKRNT-----GARGLRAILEEVMLDVMY 381 >gi|121534155|ref|ZP_01665980.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus carboxydivorans Nor1] gi|121307258|gb|EAX48175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosinus carboxydivorans Nor1] Length = 420 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ++AK+ +A+A+ N ++R L + + D EL NI+++GPTG GKT Sbjct: 64 PKEIKEILDQYVIGQEEAKKTLAVAVYNHYKRINLGSKMEDVELQKSNIVMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 236 DTTNILFICGGAFDGIDKIISARTGKKTLGFGADIKSREKKQVGEILRQILPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ IL + ++ L+ QY++ ++ + + L+F ED++ A+A Sbjct: 296 IPEFVGRLPVIVTLDALDEDALVRILVEPKNALVKQYQKFLELDNVQLEFKEDALRAIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E ++ ++ + + T I + V L+ Sbjct: 356 EALKRNT-----GARGLRAIIENLMRNVMYEVPSRTDVTKCIVTKEVVLN 400 >gi|116327863|ref|YP_797583.1| ATP-dependent protease ATP-binding subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330747|ref|YP_800465.1| ATP-dependent protease ATP-binding subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281499|sp|Q04TR3|CLPX_LEPBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122284343|sp|Q052U5|CLPX_LEPBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116120607|gb|ABJ78650.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124436|gb|ABJ75707.1| ATPase subunit of endopeptidase Clp [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 420 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 1/111 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I S LD+Y+IGQ AK+A+++A+ N ++R L D E+ NILL+GPTG GK Sbjct: 68 NPVDIKSILDQYVIGQDHAKKALSVAVYNHYKRVNLKEKKSDVEIEKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LAR+ PF V+ T TE GYVG +VE II L+ A N ++++ Sbjct: 128 TLLAQTLARIIKVPFAIVDATALTEAGYVGEDVENIILKLIQNAENDIKKA 178 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 117/252 (46%), Gaps = 68/252 (26%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVE 280 D++ + IQ EN GI+++DE DKI + I VS EGVQ+ LL ++E Sbjct: 159 DVENIILKLIQNAENDIKKAEIGIIYIDEVDKIARKSDSASITRDVSGEGVQQALLKIIE 218 Query: 281 GSSVST-----------KYGSINTDHILFIASGAFH------VSR--------------- 308 G+ + +Y ++T +ILFI GAF SR Sbjct: 219 GTIANVPPQGGRKHPHQEYLQVDTKNILFILGGAFVDLPNIIKSRTGVKTIGFGSEEQRI 278 Query: 309 -------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 P DL+ PE GR P+ L+ LN + I + +++++ QY Sbjct: 279 QAENKDTLMEQVIPEDLIKFGLIPEFIGRLPIVATLQELNVDMLKQIFREPKNSVLKQYT 338 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407 L++ E + L F ED+ID +A++A+ S GAR L+ ++E ++ D+ F S D+ Sbjct: 339 RLLELENVKLTFHEDAIDKIAELAIKRES-----GARGLRAIVENIMLDLMFDIPSRKDI 393 Query: 408 QEKTVVIDAEYV 419 +E V+I AE + Sbjct: 394 EE--VIITAEVI 403 >gi|90961621|ref|YP_535537.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus salivarius UCC118] gi|227890708|ref|ZP_04008513.1| ATP-dependent protease ATP-binding subunit [Lactobacillus salivarius ATCC 11741] gi|122449131|sp|Q1WU81|CLPX_LACS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|90820815|gb|ABD99454.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus salivarius UCC118] gi|227867646|gb|EEJ75067.1| ATP-dependent protease ATP-binding subunit [Lactobacillus salivarius ATCC 11741] Length = 408 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV L++Y++GQ++AK+ +A+A+ N ++R L D EL NI LVGPTG G Sbjct: 63 TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236 Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ LI QY++L+ + + L F +D++ +A + Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLKFEDDAVKEIAHL 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E + DI F Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMF 380 >gi|296110626|ref|YP_003621007.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii IMSNU 11154] gi|295832157|gb|ADG40038.1| ATP-dependent protease ATP-binding subunit [Leuconostoc kimchii IMSNU 11154] Length = 416 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV+EL+ Y+IGQ+DAK+ +A+A+ N ++R + EL NI L+GPTG G Sbjct: 64 TPHEIVAELNDYVIGQEDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSA 168 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 60/214 (28%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 ++GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 SHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELI 235 Query: 290 SINTDHILFIASGAF------------------------------------HVSRPAD-- 311 ++T +ILFI GAF HV +P D Sbjct: 236 QVDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAAALNSENILAHV-QPEDMT 294 Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 L+PE GR P+ L L D ILT+ ++ LI QY L+ + ++L+F D+++ Sbjct: 295 KFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTTLLGLDDVVLEFQPDALE 354 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A++A+ ++ GAR L++++E ++D+ F Sbjct: 355 AMAELAIKRHT-----GARGLRSIIELAMKDVMF 383 >gi|291288694|ref|YP_003505510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio acetiphilus DSM 12809] gi|290885854|gb|ADD69554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Denitrovibrio acetiphilus DSM 12809] Length = 415 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 FN +P EI ++LD Y+IGQQ AK+ +++A+ N ++R EL NILL+GPTG Sbjct: 58 FNLLTPAEIKAKLDEYVIGQQAAKKILSVAVHNHYKRVLHGKKSEVELEKSNILLLGPTG 117 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 118 TGKTLLARTLARILNVPFAIADATTLTEAGYVGEDVENVVLKLLQNA 164 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 59/213 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+F+DE DKI R I VS EGVQ+ LL ++EG+ + Y + Sbjct: 174 GIIFIDEIDKISKRGDSPSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPQQDYIQV 233 Query: 292 NTDHILFIASGAF----------------------------HVSR--------PADL--- 312 +T +ILFI GAF ++R P DL Sbjct: 234 DTSNILFIVGGAFDYLDEVIKKRVGKKSLGFSSATEEETKSELNRFELLCELQPTDLVKY 293 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ L++ IL + +++L+ QY+++ K + + L FT ++ ++ Sbjct: 294 GLIPEFVGRLPVAAALEDLDEEALVRILQEPKNSLLRQYEQMFKFDDVKLTFTNSALKSV 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A A+N + GAR L++++E + D+ +S Sbjct: 354 AKKALNRKT-----GARGLRSILEESMMDVMYS 381 >gi|63079330|gb|AAY29673.1| predicted ATP-dependent specificity component of the Clp protease [Bifidobacterium breve UCC2003] Length = 453 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 116/251 (46%), Gaps = 66/251 (26%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278 D++TV + +Q + +GI+++DE DKI AR SG ++R EGVQ+ LL + Sbjct: 185 DVETVLQRLLQAADGDVSRAQHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 243 Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------H 305 +EG+ S ++T ILFI GAF H Sbjct: 244 LEGTIASVPLEGTRKHKEQDTVQMDTCGILFICGGAFVGLTDIVRKRLGRRETGFGANWH 303 Query: 306 VSRPAD----------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 + D LLPE GR PV LK L D ILT + LI QY Sbjct: 304 DADLKDEELLKQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTEILTQPANALIKQY 363 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 ++L +G+ L+FT+ ++ A+AD A+ IGAR L++++ER L+D F L++ Sbjct: 364 RKLFAVDGVDLEFTDQAVQAIADTAIKQG-----IGARGLRSIIERTLQDTMFQLPSLED 418 Query: 410 -KTVVIDAEYV 419 K VV+D V Sbjct: 419 VKQVVVDKASV 429 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 31/133 (23%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40 P +I L+RY+IGQ++AKRA+++A+ N ++R Sbjct: 65 PTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNAALQSAGRAR 124 Query: 41 --QQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 Q+ L D E+ NILL+GPTGVGKT +++ LAR+ PF+ + T TE GYVG Sbjct: 125 KSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGD 184 Query: 98 NVEQIIRDLVDVA 110 +VE +++ L+ A Sbjct: 185 DVETVLQRLLQAA 197 >gi|242373966|ref|ZP_04819540.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis M23864:W1] gi|242348320|gb|EES39922.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis M23864:W1] Length = 420 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P++ EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPSEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FT++++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDIAALKNILTQPKNALVKQYTKMLELDNVELEFTDEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|83949689|ref|ZP_00958422.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens ISM] gi|83837588|gb|EAP76884.1| ATP-dependent protease ATP-binding subunit [Roseovarius nubinhibens ISM] Length = 421 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPREICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHSGKSGDIELQKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEVFKELEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + EG L FT+D++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQYQRLFELEGAQLSFTDDALKAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L++++E +L + F L Sbjct: 358 RAIQRKT-----GARGLRSILEDILLNTMFELPGL 387 >gi|89900347|ref|YP_522818.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodoferax ferrireducens T118] gi|122479496|sp|Q21Y66|CLPX_RHOFD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|89345084|gb|ABD69287.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodoferax ferrireducens T118] Length = 421 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R Q A D EL NILL+GPTG Sbjct: 67 TPLEIKTNLDNYVIGQEPAKRTLAVAVYNHYKRLRHQEKAKKDDVELAKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE I+ L+ V ++R Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLLQSCNYEVERAQR 181 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFSGLEKVIDNRTQSSGMGFGATVKSKEQRSLTEVFKEVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVLATLAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPSALKAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386 >gi|121997403|ref|YP_001002190.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira halophila SL1] gi|167009016|sp|A1WUM6|CLPX_HALHL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|121588808|gb|ABM61388.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halorhodospira halophila SL1] Length = 426 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI ELD+Y+IGQ+ AK+ +++A+ N ++R + D EL NILL+GPTG GKT Sbjct: 69 PHEINRELDQYVIGQEHAKKVLSVAVYNHYKRLESRTSQDDVELTKSNILLIGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DK+ + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 179 QHGIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPQQEFV 238 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T ++LFI GAF P+DL Sbjct: 239 QVDTSNMLFICGGAFAGLDKVIQERSERGGIGFSAEIKGEGERASVGETLQTVEPSDLVR 298 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L L++ IL + ++ L+ QY++L + EG+ LD +D++ A Sbjct: 299 YGLIPEFVGRLPVIATLNELDQEALVQILREPKNALVKQYQKLFEMEGVELDLRDDALRA 358 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +AD A+ + GAR L+T++E+VL + + ++ + V+ E V Sbjct: 359 VADKAMERKT-----GARGLRTIIEQVLLETMYELPSMENVSKVVVDESV 403 >gi|300214432|gb|ADJ78848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus salivarius CECT 5713] Length = 408 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV L++Y++GQ++AK+ +A+A+ N ++R L D EL NI LVGPTG G Sbjct: 63 TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236 Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ LI QY++L+ + + L F +D++ +A + Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVSLRFEDDAVKEIAHL 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ N+ GAR L++++E + DI F S+ K VVI + V Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMFDIPSEDNIKEVVITKDTV 398 >gi|257093850|ref|YP_003167491.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046374|gb|ACV35562.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 423 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ AKR +++A+ N ++R + D EL NILL+GPTG G Sbjct: 66 TPKEISALLDQYVIGQDQAKRILSVAVYNHYKRLRHHGRAGDDIELAKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ A Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQKA 170 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 66/241 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQDFVQV 239 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 240 DTTNILFICGGAFDGLEKVIRNRSDRGGIGFGAEVKSKDNSKAIGEVLRGVEPEDLIKFG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L+ + IL + ++ L+ QY++L EG+ L+ + ++ A+A Sbjct: 300 LIPELIGRLPVIATLEELSAAALVQILIEPKNALVKQYQKLFGMEGVALEIRQAAMLAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--------EKTVVIDAEYVRLHI 423 A+ + GAR L++++E VL D + ++ E ++ DA+ + ++ Sbjct: 360 RKALERKT-----GARGLRSILESVLLDTMYELPGMENVSEVIIDENVIIGDAQPLLIYA 414 Query: 424 G 424 G Sbjct: 415 G 415 >gi|126741245|ref|ZP_01756924.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] gi|126717650|gb|EBA14373.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. SK209-2-6] Length = 422 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 SP++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 SPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 65/238 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDDRGVGEIFQDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT +++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTLPKNALVKQYQRLFELEETELDFTPEALKAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLH 422 A+ + GAR L+++ME +L D F + E+ V DA+ + +H Sbjct: 359 KAIERKT-----GARGLRSIMEDILLDTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIH 411 >gi|254294161|ref|YP_003060184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hirschia baltica ATCC 49814] gi|254042692|gb|ACT59487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hirschia baltica ATCC 49814] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P+EI LD Y+IGQ AKR +A+A+ N ++R + +E L NILLVGPTG G Sbjct: 66 TPQEICDVLDDYVIGQAQAKRVLAVAVHNHYKRLSHASKNGNEVELAKSNILLVGPTGCG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 126 KTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 179 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T ++LFI GAF VS P D L Sbjct: 240 DTTNMLFICGGAFAGLDKVISDRGQGSSIGFGATVSDPDDRRVGAVLQDCEPEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ +ILT ++ L+ QY+ L E + L F++D++ +A+ Sbjct: 300 IPEFIGRLPVIATLEDLDTDSLVMILTQPKNALLKQYQRLFDMENVQLTFSDDALTGVAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F +L+ + VVI+AE V Sbjct: 360 KAIQRRT-----GARGLRSILEGILLDTMFELPNLRGIEEVVINAEVV 402 >gi|257784420|ref|YP_003179637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium parvulum DSM 20469] gi|257472927|gb|ACV51046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium parvulum DSM 20469] Length = 432 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNILLVGP 61 +P EI EL +Y++GQ+DAKRA+++A+ N +RR P + ++ E+ NILL+GP Sbjct: 78 TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRILSGNDEPQEGKEDVEIAKSNILLLGP 137 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 138 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 186 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V G I Sbjct: 196 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVANVPPTGGRKHPQQELIHI 255 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312 +T +ILFI GAF V++ P DL Sbjct: 256 DTTNILFICGGAFVGLDKIVADRIGKKGIGFNSDVAKNVKEDESELIAKVMPQDLHKFGM 315 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV + L + D ILTD ++ L QY+ + + EG+ L+FTEDS+ +A Sbjct: 316 IPELLGRIPVITSTRELGEEDLMSILTDPKNALTKQYRRMFELEGVDLEFTEDSLREIAK 375 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ + E L++I F SDL VV+ E V Sbjct: 376 KALARGT-----GARGLRAICESTLQEIMFDLPSDLDITKVVVTPESV 418 >gi|39936025|ref|NP_948301.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris CGA009] gi|192291680|ref|YP_001992285.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris TIE-1] gi|61211520|sp|Q6N5L4|CLPX_RHOPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229484081|sp|B3Q7P4|CLPX_RHOPT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39649879|emb|CAE28401.1| ATP-dependent Clp protease ATP binding subunit ClpX [Rhodopseudomonas palustris CGA009] gi|192285429|gb|ACF01810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris TIE-1] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIISSRGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E + L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQRLFEMENVELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|254512525|ref|ZP_05124592.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium KLH11] gi|221536236|gb|EEE39224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium KLH11] Length = 421 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDDRGVGEIFKELEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTSPKNALVKQYQRLFELEDAELAFTDDALKAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F ++ T VV++ E V Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTEVVVNEEAV 401 >gi|154494363|ref|ZP_02033683.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC 43184] gi|154085807|gb|EDN84852.1| hypothetical protein PARMER_03718 [Parabacteroides merdae ATCC 43184] Length = 390 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 155 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 214 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 215 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYAANENTAQVDRNNLLKYITPTDLKSFGLI 274 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++S R ILT+ ++++I QY +L + I L F ED + + D Sbjct: 275 PEIIGRLPILTYLNPLDRSTLRNILTEPKNSIIKQYIKLFAMDDIELTFDEDVFEFIVDK 334 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S EKT+ + EY + Sbjct: 335 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSANEKTLHVTLEYAK 376 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++A+ N ++R Q++ +D E+ NI++VG TG GK Sbjct: 43 PEDIKTFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSD-DVEIEKSNIIMVGATGTGK 101 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 102 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 154 >gi|301299297|ref|ZP_07205583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853141|gb|EFK80739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus salivarius ACS-116-V-Col5a] Length = 408 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV L++Y++GQ++AK+ +A+A+ N ++R L D EL NI LVGPTG G Sbjct: 63 TPHEIVDTLNQYVVGQEEAKKTLAVAVYNHYKRVNASLSDDDGTELQKSNICLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 123 KTFLAQNLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAQR 176 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 236 Query: 292 NTDHILFIASGAFHVSR---------------------------------PADLL----- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFIVGGAFDGIETMVKNRLGDKTIGFGVDSKQEYDPDKSLMQQIIPEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ LI QY++L+ + ++L F +D++ +A + Sbjct: 297 PEFIGRLPILTALEKLTEEDLVRILTEPKNALIKQYQKLVSFDDVLLKFEDDAVKEIAHL 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E + DI F Sbjct: 357 AIERNT-----GARGLRSIVEATMRDIMF 380 >gi|86749682|ref|YP_486178.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] gi|123292611|sp|Q2IWZ3|CLPX_RHOP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86572710|gb|ABD07267.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris HaA2] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|323451888|gb|EGB07764.1| hypothetical protein AURANDRAFT_27171 [Aureococcus anophagefferens] Length = 372 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 4/110 (3%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW---RRQQLPADLRD-ELMPKNILLVG 60 F+ PR++ LDRY++ Q DAK+ +++A+ + + RR A R E NILL+G Sbjct: 28 FDLRPRQVREHLDRYVVRQDDAKKVLSVAICDHYNVVRRCLSDASERAAEYSKPNILLLG 87 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+G GKT I R LA+L G PF+K + TKFTE G VG + E ++R+LV+ A Sbjct: 88 PSGSGKTYIMRTLAKLLGVPFVKADATKFTETGIVGEDAEDLVRNLVEQA 137 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 104/285 (36%), Gaps = 88/285 (30%) Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN-------------YGIV 247 GSG+ +R + ++ ++ + + V D+ +V N YGI+ Sbjct: 90 GSGKTYIMRTLAKLLGVPFVKADATKFTETGIVGEDAEDLVRNLVEQADGDVELAQYGII 149 Query: 248 FLDEFDKIVARDSGNGIGVSREG---------VQRDLLPLVEGSSVSTKYGS-------- 290 ++DE DK+ + G G VQ L ++E + +S S Sbjct: 150 YVDEVDKLCRGEQGGTSTTGAGGATVGGGARGVQSTFLKVMEETEISVNKQSGMIPEIFL 209 Query: 291 ---------INTDHILFIASGAF----------HVSRP---------------------- 309 ++T H+LFI SGAF H R Sbjct: 210 GGKPAQPARVSTKHVLFIFSGAFTGLDERLKRKHEQRSMGFGLEAAGGDDGLTDDGVPKS 269 Query: 310 ------------ADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 A L E GR PVRV + L D LIL +E +++ QY+ G Sbjct: 270 FLKKATSSDFVDAGLETEFIGRIPVRVAVDPLGARDLELILLQSEGSVLRQYERDFAGYG 329 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + L+ T D+I A+A A + GAR L TV+ER D + Sbjct: 330 VDLEVTRDAIAAVAAEAAEEKT-----GARGLVTVLERTFRDFKY 369 >gi|53719040|ref|YP_108026.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei K96243] gi|52209454|emb|CAH35405.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia pseudomallei K96243] Length = 430 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 75 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 133 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 134 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 187 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 188 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 247 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 248 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 307 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 308 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 368 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 404 >gi|299135042|ref|ZP_07028233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp. 1NLS2] gi|298590019|gb|EFI50223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Afipia sp. 1NLS2] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFSGLEKIISSRGRTTSIGFAASVLAPEDRRTGEIFREVEPEDLLKYGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ + IL + ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 298 IPEFVGRLPVVATLEDLDEASLKKILVEPKNALVKQYQRLFEMENIELTFADEALGAVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|224283327|ref|ZP_03646649.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium bifidum NCIMB 41171] gi|313140479|ref|ZP_07802672.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium bifidum NCIMB 41171] gi|313132989|gb|EFR50606.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium bifidum NCIMB 41171] Length = 437 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 60/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254 Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311 +I+T ILFI GAF H +P + Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV L L ++D ILT+ ++ L+ QY+++ +G+ L FTE +++A Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLAFTEQAVNA 374 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A A+ + GAR L++++E+ LE+ F + + + V++DA VR Sbjct: 375 IASTAITRGT-----GARGLRSIIEKTLEETMFELPGMDDVQQVIVDAASVR 421 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 26/126 (20%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49 P EI + LDRY+IGQ AKR +++A+ N ++R + +LR+ Sbjct: 65 PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNM--ELRESAGQFDGKKQALGRRRRTD 122 Query: 50 -----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 E+ NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ Sbjct: 123 PLADVEVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182 Query: 105 DLVDVA 110 L+ A Sbjct: 183 RLISAA 188 >gi|330817270|ref|YP_004360975.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] gi|327369663|gb|AEA61019.1| ATP-dependent protease ATP-binding subunit [Burkholderia gladioli BSR3] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEVELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQERDSGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELELRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397 >gi|146328686|ref|YP_001209153.1| ATP-dependent protease ATP-binding subunit ClpX [Dichelobacter nodosus VCS1703A] gi|146232156|gb|ABQ13134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dichelobacter nodosus VCS1703A] Length = 425 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 4/116 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63 +P+EI S LDRYIIGQ AK+++A+A+ N ++R +L + D E+ NIL++G TG Sbjct: 70 TPQEIKSFLDRYIIGQDQAKKSLAVAVYNHYKRLRLNQNAEDDDGIEIAKSNILMIGSTG 129 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ PF + T TE GYVG +VE II+ L+ N V ++ R Sbjct: 130 SGKTLLAQTLAKCLNVPFAIADATALTEAGYVGDDVETIIQKLLMNCDNDVTQAER 185 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 66/234 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-SVSTKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ + +G + Sbjct: 186 GIIYIDEIDKIARKGDSASITRDVSGEGVQQALLKLVEGTIAAVPPHGGRKHPQQEMTHV 245 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFI GAF P DL Sbjct: 246 DTRNILFICGGAFDGLEKIIAKRTDKGSIGFNAAVRGKNSLVEGAEAQLLKQVEPEDLVK 305 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR P+ L +L++S ILT+ ++ ++ Q+ ++ E + L+F + ++ A Sbjct: 306 FGLIPEFVGRLPIVTLLDTLDESALVRILTEPKNAIVRQFSKIFSYEQVDLEFEDAALTA 365 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYV 419 +A A+ + GAR L++++E++L D F +++D+++ +VI AE V Sbjct: 366 IAQKAIARKT-----GARGLRSIVEQLLLDTMFELPTTSTDVEK--IVISAENV 412 >gi|148255922|ref|YP_001240507.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] gi|166214758|sp|A5EKA7|CLPX_BRASB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146408095|gb|ABQ36601.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bradyrhizobium sp. BTAi1] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILT+ ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|291278626|ref|YP_003495461.1| ATP-dependent Clp protease ATP-binding subunit [Deferribacter desulfuricans SSM1] gi|290753328|dbj|BAI79705.1| ATP-dependent Clp protease, ATP-binding subunit [Deferribacter desulfuricans SSM1] Length = 410 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 64/102 (62%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI ++LD Y+IGQ DAKR +++A+ N ++R E+ NIL++GPTG GKT Sbjct: 60 PAEIKAKLDEYVIGQDDAKRVLSVAVYNHYKRILFGKKTDVEIEKSNILMIGPTGTGKTL 119 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R LA++ PF + T TE GYVG +VE ++ L+ A Sbjct: 120 LARTLAKILNVPFAIADATTLTEAGYVGEDVENVVLKLIQAA 161 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 171 GIIFIDEIDKISRKTDSPSITRDVSGEGVQQALLKIIEGTVANIPPQGGRKHPHQEYLQI 230 Query: 292 NTDHILFIASGAF--------------------------HVSR--------PADLL---- 313 +T +ILFI GAF +SR P DL+ Sbjct: 231 DTTNILFICGGAFAGLEEVIKRRIGKKSLGFNSEIENQNKLSRDEILRQVQPEDLIKYGL 290 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT+ +++L+ Q++E+ K + + L FT+ ++ A+A Sbjct: 291 IPEFVGRLPVIATLHDLDEEALIKILTEPKNSLVKQFQEIFKLDNVKLTFTQGALRAIAK 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + D+ + Sbjct: 351 KAIARKT-----GARGLRSIVEEAMLDLMY 375 >gi|255690573|ref|ZP_05414248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides finegoldii DSM 17565] gi|260624035|gb|EEX46906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides finegoldii DSM 17565] Length = 414 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDRNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEKSVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D+ F +KT + EY + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENKKTYEVTLEYAK 400 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|210615409|ref|ZP_03290536.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787] gi|210150258|gb|EEA81267.1| hypothetical protein CLONEX_02752 [Clostridium nexile DSM 1787] Length = 426 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 73 LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 132 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 176 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI++LDE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 185 HGIIYLDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 244 Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312 I+T +ILFI GAF +V R P DL Sbjct: 245 IDTTNILFICGGAFEGLDKIIETRMDRKSMGFNAEVGNHHEDNVDRLLSQVLPQDLVKFG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L++ ILT+ +S ++ QY++L++ +G+ L+F +++++ +A Sbjct: 305 LIPELVGRVPVNVTLEMLDRDALIRILTEPKSAIVKQYQKLLELDGVELEFDKEALEKIA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 D ++ + GAR L+ +ME V+ D + S+ + KT I E V Sbjct: 365 DTSLARKT-----GARGLRAIMENVMMDTMYHVPSNDRIKTCRITKEAV 408 >gi|158521239|ref|YP_001529109.1| ATPase [Desulfococcus oleovorans Hxd3] gi|158510065|gb|ABW67032.1| ATPase AAA-2 domain protein [Desulfococcus oleovorans Hxd3] Length = 597 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 5/113 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDEL--MPKNILLV 59 F+ P E+++ LD+YII Q AK+ +A + NR R Q L R+ + + N+L++ Sbjct: 58 FDLKPEEMIAYLDQYIIRQDQAKKVLATKICTHFNRVRHQALWNRTRNMVGGIKNNVLMI 117 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 GPTGVGKT + R +A+ G PF+K + TKF+E GYVG +VE ++RDLV A N Sbjct: 118 GPTGVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADN 170 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 78/270 (28%) Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI-------DMDTVHRDSIQMVEN------YGIV 247 G G+ IR+ +K ++ ++ + D++ + RD ++ +N +GI+ Sbjct: 121 GVGKTYMIRLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLVREADNDIERAQFGII 180 Query: 248 FLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------------ 289 ++DE DKI + G VSR GVQR LL L+E + V K Sbjct: 181 YIDEIDKIASSRGLMGPDVSRSGVQRALLTLMEETEVEMKVPHDPVSVMQEVEQFRKTGK 240 Query: 290 ----SINTDHILFIASGAFH--------------------VSRPAD-------------- 311 ++NT +ILFI SGAF+ + P+D Sbjct: 241 REKRTVNTRNILFIMSGAFNGLQEIIGKRLSRQAIGFGAKIQDPSDDPWEIMQHVRSEDL 300 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 E GR PVR +SL ++D IL + + ++L K I + F + ++ Sbjct: 301 TEFGFEAEFVGRLPVRAVFESLTEADLFAILKNPSNPIVLSKKMDFAAYDIDVKFADAAL 360 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVL 397 LA N+ GAR L +ER L Sbjct: 361 AGLAK-----NAFQEKTGARGLVNAVERAL 385 >gi|332528100|ref|ZP_08404131.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax benzoatilyticus JA2] gi|332112671|gb|EGJ12464.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrivivax benzoatilyticus JA2] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE--LMPKNILLVGPTGVG 65 P EI + LD+Y+IGQ AKR +++A+ N ++R + + A +DE L NILL+GPTG G Sbjct: 69 PSEIKTSLDQYVIGQDVAKRTLSVAVYNHYKRLKHMGAGGKDEVELTKSNILLIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LA+L PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 KTLLAQTLAKLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 170 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G I Sbjct: 183 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 242 Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 243 DTTNILFICGGAFDGLEKVIQGRTEKSGIGFGATVHSKSEKRVSDLFREVEPEDLIKFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY++L +G+ L+ ++ A+A Sbjct: 303 IPELVGRLPVVATLGELTEDAMVQILTEPKNALVKQYQKLFGMDGVELEIRPSALSAIAR 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L+++ME L D F L V+ E++ Sbjct: 363 KALARKT-----GARGLRSIMEHALIDTMFDLPTLDGVAKVVIDEHI 404 >gi|307822659|ref|ZP_07652890.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter tundripaludum SV96] gi|307736263|gb|EFO07109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter tundripaludum SV96] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 3/101 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI ELD Y+IGQ++AK+ +A+A+ N ++R + + +D EL NILL+GPTG GK Sbjct: 68 PKEIKEELDSYVIGQENAKKILAVAVYNHYKRLRSKSK-KDTVELAKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ ++ Sbjct: 127 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKIL 167 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 96/206 (46%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311 NT +ILFI GAF + A+ Sbjct: 240 NTANILFIVGGAFAGLDRVIKDRSEKGGIGFSAEIKTKDESKNIGQLFAEVEAEDLIKYG 299 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT+ ++ LI QYK L + EG L+F +DS+ A+A Sbjct: 300 LIPEFVGRLPVIATLEELDEKALVQILTEPKNALIKQYKHLFEMEGAELEFRDDSLTAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L+T++E VL Sbjct: 360 RKAMERKT-----GARGLRTIVENVL 380 >gi|226324367|ref|ZP_03799885.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758] gi|225206815|gb|EEG89169.1| hypothetical protein COPCOM_02148 [Coprococcus comes ATCC 27758] Length = 416 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL+VGPTG GK Sbjct: 63 LKPEEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELQKSNILMVGPTGCGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 123 TFLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 166 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 175 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEMIQ 234 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF + R P DL Sbjct: 235 IDTTNILFICGGAFEGIDKIIENRIDKKSIGFEAQIAQRHEEDIDRLLQQILPQDLVKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L+K D ILT+ ++ ++ QY++L++ + + L+F +++++A+A Sbjct: 295 LIPELVGRVPVTVSLELLDKEDLIRILTEPKNAIVKQYQKLLELDDVELEFDKEALEAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 + ++ + GAR L+ +ME V+ DI + A SD K ++ E V Sbjct: 355 ETSLKRKT-----GARGLRAIMENVMMDIMYKAPSDENLKYCLVTKEAV 398 >gi|53723666|ref|YP_103111.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei ATCC 23344] gi|67642017|ref|ZP_00440780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei GB8 horse 4] gi|121600417|ref|YP_993273.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei SAVP1] gi|124383380|ref|YP_001029283.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei NCTC 10229] gi|126448291|ref|YP_001080783.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia mallei NCTC 10247] gi|166998704|ref|ZP_02264558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei PRL-20] gi|254177862|ref|ZP_04884517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 10399] gi|254200062|ref|ZP_04906428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei FMH] gi|254206397|ref|ZP_04912749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei JHU] gi|254358193|ref|ZP_04974466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei 2002721280] gi|61211429|sp|Q62JK8|CLPX_BURMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214762|sp|A3MKJ7|CLPX_BURM7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214763|sp|A2SBG4|CLPX_BURM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214764|sp|A1V4X0|CLPX_BURMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|52427089|gb|AAU47682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 23344] gi|121229227|gb|ABM51745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei SAVP1] gi|124291400|gb|ABN00669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei NCTC 10229] gi|126241161|gb|ABO04254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei NCTC 10247] gi|147749658|gb|EDK56732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei FMH] gi|147753840|gb|EDK60905.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei JHU] gi|148027320|gb|EDK85341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei 2002721280] gi|160698901|gb|EDP88871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei ATCC 10399] gi|238523065|gb|EEP86506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei GB8 horse 4] gi|243065059|gb|EES47245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia mallei PRL-20] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397 >gi|94310822|ref|YP_584032.1| ATP-dependent protease ATP-binding subunit ClpX [Cupriavidus metallidurans CH34] gi|166214808|sp|Q1LM63|CLPX_RALME RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|93354674|gb|ABF08763.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Cupriavidus metallidurans CH34] Length = 425 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRESLDQYVIGQDQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 181 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 242 DTTNILFICGGAFDGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L+ EG+ L+ ++ A+A Sbjct: 302 IPELIGRLPVVATLAKLDEAALMQILIEPKNALVKQYQKLLAMEGVELEIRPAALSAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E+ L D+ + + + + VVID Sbjct: 362 KAIRRKT-----GARGLRSILEQSLMDVMYDLPNYKGVQKVVID 400 >gi|255038318|ref|YP_003088939.1| Sigma 54 interacting domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951074|gb|ACT95774.1| Sigma 54 interacting domain protein [Dyadobacter fermentans DSM 18053] Length = 414 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EGS V+ K S+ Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQKMISL 235 Query: 292 NTDHILFIASGAF-----HV-----SRPAD-----------------------------L 312 NT++ILFI GAF H+ +RP L Sbjct: 236 NTENILFICGGAFDGIERHIGKRINTRPIGFNGDNRIIEIFDKGNLMRYVTAMDLKSFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV HL L++ R ILT+ ++ L+ QY +L EGI L F + +D + D Sbjct: 296 IPELIGRLPVLTHLNPLDRETLRRILTEPKNALVRQYSKLFAMEGITLHFEDAVLDYIVD 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + +GAR L+ + E ++ D F S +++E T+ +D Sbjct: 356 QAM-----IYKLGARGLRAICESIMTDAMFDLPSQKEVKEFTLSLD 396 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67 P EI L++Y+IGQ +AKR++A+A+ N ++R A D ++ K NI++VG TG GKT Sbjct: 64 PAEIKHFLEQYVIGQDEAKRSLAVAVYNHYKRLNQAATEDDVVIEKSNIIMVGETGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAKSIARILQVPFCVADATVVTEAGYVGEDVETILTRLLQAA 166 >gi|126733144|ref|ZP_01748891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. CCS2] gi|126716010|gb|EBA12874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. CCS2] Length = 421 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P EI LD Y+IGQ AKR +++A+ N ++R EL NI+L+GPTG GKT Sbjct: 65 TPSEICGVLDDYVIGQMHAKRVLSVAVHNHYKRLNHAEKSDIELAKSNIMLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVREDDDRGIGEIFTDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L E L FTED++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFDLEDTKLTFTEDALAAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F + T VV++ E V Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFDLPGMDTVTEVVVNEEAV 399 >gi|187923897|ref|YP_001895539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia phytofirmans PsJN] gi|296157828|ref|ZP_06840662.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. Ch1-1] gi|238689607|sp|B2T404|CLPX_BURPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|187715091|gb|ACD16315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia phytofirmans PsJN] gi|295892074|gb|EFG71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. Ch1-1] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397 >gi|27380054|ref|NP_771583.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium japonicum USDA 110] gi|46576546|sp|Q89KG2|CLPX_BRAJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27353208|dbj|BAC50208.1| ATP-dependent Clp protease ATP-binding subunit [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFGAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILT+ ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDETSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILEAILLETMFDLPGLEGVEEVVISREVV 400 >gi|303229430|ref|ZP_07316220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-134-V-Col7a] gi|302515966|gb|EFL57918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-134-V-Col7a] Length = 417 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 62 TPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNMVDDVELQKSNVLFIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRAEERDVSAILKEVVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L F +D+++ +AD Sbjct: 295 IPEFIGRLPVMVTLDLLDRDALVQILTKPKNALTKQYEKILSLDGVELTFEDDALEEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ ++E+V++ + + + Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKYVMYEVPSM 384 >gi|89055298|ref|YP_510749.1| ATP-dependent protease ATP-binding subunit ClpX [Jannaschia sp. CCS1] gi|122498234|sp|Q28NI8|CLPX_JANSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|88864847|gb|ABD55724.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Jannaschia sp. CCS1] Length = 421 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI LD Y+IGQ AKR +++A+ N ++R EL NI+L+GPTG GKT Sbjct: 65 TPQEICGVLDDYVIGQAHAKRVLSVAVHNHYKRLNHSDKSDIELAKSNIMLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDPDSKSVGEYFKDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E + L FT+D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILTGPKNALVKQYQRLFELEDVKLTFTDDAMSAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+++ME +L D F Sbjct: 357 RAI-LRKT----GARGLRSIMEDILLDTMF 381 >gi|256420339|ref|YP_003120992.1| ATPase AAA [Chitinophaga pinensis DSM 2588] gi|256035247|gb|ACU58791.1| Sigma 54 interacting domain protein [Chitinophaga pinensis DSM 2588] Length = 411 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ K + Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTEALVPPQGGRKHPEQKLIKV 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD--------LL 313 NT +ILFI GAF H+ R + L+ Sbjct: 236 NTQNILFICGGAFDGVDKIISRRVQTHSIGFTVNTDREEENKKHILRYINSQDLKAFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L SL+ + ILT+ ++ L+ QYK+L K EGI L +D++D + + Sbjct: 296 PELLGRLPVVTYLNSLDHEALKAILTEPKNALVKQYKKLFKVEGIELVIEDDAVDYIVEK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E VL D F+ E T V+ Y Sbjct: 356 AMEYK-----LGARGLRSICEVVLSDAMFNLPSSSESTFVLTRAY 395 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ DAK+ +A+A+ N ++R Q D E+ NI++VG TG GKT Sbjct: 64 PVEIKKFLDEYVIGQDDAKKILAVAVYNHYKRLNQQVGDDDVEIEKSNIIMVGETGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +ARL PF V+ T FTE GYVG +VE I+ L+ V Sbjct: 124 LLAKSIARLLNVPFTIVDATVFTEAGYVGEDVESILTRLLQVC 166 >gi|154497946|ref|ZP_02036324.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC 29799] gi|150272936|gb|EDN00093.1| hypothetical protein BACCAP_01926 [Bacteroides capillosus ATCC 29799] Length = 438 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 65/103 (63%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI LD+YIIGQ+DAK A+++A+ N ++R EL NILLVGPTG GKT Sbjct: 65 TPREIREVLDQYIIGQEDAKVALSVAVYNHYKRIYFGGGEDVELQKSNILLVGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR+ PF + T TE GYVG +VE I+ LV A Sbjct: 125 LFAQTLARILKVPFAIADATTLTEAGYVGDDVENILLRLVQAA 167 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 177 GIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF +P DL+ Sbjct: 237 NTKNILFICGGAFDGLEKIIEQRQDRKTMGFGAEIKSKKELDRSAVLKDVQPHDLIKFGI 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L++LNK ILT+ ++ L+ QY++L++ + + L F +++A AD Sbjct: 297 IPELVGRLPVVTTLRALNKEQLVQILTEPKNALVKQYEKLLEYDNVALRFEPAALEAAAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422 A+ +IGAR L+ V+E + I + SD V I A+ +R H Sbjct: 357 KAIER-----EIGARGLRAVLEESVTQIMYDVPSDPTITGVTITADTIRDH 402 >gi|146341126|ref|YP_001206174.1| ATP-dependent protease ATP-binding subunit ClpX [Bradyrhizobium sp. ORS278] gi|166214759|sp|A4YVM3|CLPX_BRASO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146193932|emb|CAL77949.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bradyrhizobium sp. ORS278] Length = 424 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHSDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILT+ ++ L+ QY+ L + E I L F ++++ A++ Sbjct: 297 LIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQRLFEMENIELTFADEALGAVS 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|288958757|ref|YP_003449098.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp. B510] gi|288911065|dbj|BAI72554.1| ATP-dependent Clp protease ATP-binding subunit [Azospirillum sp. B510] Length = 420 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I + LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPRDIHAVLDDYVIGQSYAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF H P DLL Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRSADERATGEILHEVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ IL+ ++ L+ QY+ L + E + L+F+ED++ A+A Sbjct: 298 IPEFIGRLPVLATLSDLDEAALVEILSKPKNALVKQYQRLFEMEDVHLEFSEDAMRAIAH 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L ++++++ E V Sbjct: 358 KAIARKT-----GARGLRSIMEAILLDPMFDLPGLTGIESILVNKEVV 400 >gi|170692396|ref|ZP_02883559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia graminis C4D1M] gi|170142826|gb|EDT10991.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia graminis C4D1M] Length = 423 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397 >gi|154482728|ref|ZP_02025176.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC 27560] gi|149736323|gb|EDM52209.1| hypothetical protein EUBVEN_00405 [Eubacterium ventriosum ATCC 27560] Length = 426 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ AK+ +++A+ N ++R DL EL NILL+GPTG GK Sbjct: 64 LKPKEIKEFLDQYVIGQDAAKKVLSVAVYNHYKRVLAGKDLDVELQKSNILLLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 167 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 235 Query: 291 INTDHILFIASGAFH-----VSR-----------------------------PADL---- 312 I+T +ILFI GAF + R P DL Sbjct: 236 IDTTNILFICGGAFDGLGKIIERRLDKGSIGFNSQIIEKTDKSEDELFKQVMPEDLTKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L L++ ILT+ ++ LI QYK+L + +G+ L FT+++I+ +A Sbjct: 296 LIPEFIGRVPVTVSLDFLDEKALERILTEPKNALIKQYKKLFELDGVELKFTDEAINTIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419 AV + GAR L+ ++E + DI + + SD K +++ + + Sbjct: 356 KKAVERKT-----GARGLRAILENAVMDIMYETPSDETIKECIVNEDVI 399 >gi|209525240|ref|ZP_03273782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira maxima CS-328] gi|209494255|gb|EDZ94568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira maxima CS-328] Length = 447 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 PREI + LD Y+IGQ DAK+ +++A+ N ++R R EL NILL+GPTG Sbjct: 85 PREIKAYLDHYVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNILLIGPTG 144 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 145 CGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 60/213 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG++ V + G I Sbjct: 201 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF-------------------HVSR------------------PADL-- 312 +T +ILFI GAF H + P DL Sbjct: 261 DTSNILFICGGAFVGLEKIIEQRSGKKSMGFVHSGQEVTPDKDKKDAEALKGIEPNDLVK 320 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE+ GR P+ L L++ ILT+ S L+ QY++L++ + + L+F D+I A Sbjct: 321 FGLIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDNVHLEFDADAIRA 380 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A A + GAR L+ ++E ++ D+ + Sbjct: 381 IAQEAFRRKT-----GARALRGIVEELMLDVMY 408 >gi|189424986|ref|YP_001952163.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter lovleyi SZ] gi|238692096|sp|B3E1Z3|CLPX_GEOLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189421245|gb|ACD95643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter lovleyi SZ] Length = 419 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ+ AK+ +++A+ N ++R + PA D E+ NIL++GPTG GKT Sbjct: 66 PKEIKEFLDEYVIGQETAKKVLSVAVYNHYKRIERPAKPGDVEMQKSNILILGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 126 LLAQTLARMLKVPFAIADATNLTEAGYVGEDVENIILSLLQAA 168 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ S+ K G + Sbjct: 178 GIVYIDEIDKIARKAESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTSNILFICGGAFAGLDGVIQQRIGKKTLGFGADVKKKLEKKAGELLLQVTPEDLLKYGY 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ ILT+ ++ L QY++L EG+ L FT+ ++ ++A Sbjct: 298 IPEFIGRLPMLASLTELDEDALVQILTEPKNALTKQYQKLFDMEGVRLRFTDGALVSIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E + DI + Sbjct: 358 EALKRNT-----GARGLRAILEGAMLDIMY 382 >gi|325662429|ref|ZP_08151035.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471263|gb|EGC74487.1| hypothetical protein HMPREF0490_01774 [Lachnospiraceae bacterium 4_1_37FAA] Length = 213 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+ +A+++ N ++R DL EL NIL++GPTG GK Sbjct: 64 LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167 >gi|188585729|ref|YP_001917274.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius thermophilus JW/NM-WN-LF] gi|229463722|sp|B2A159|CLPX_NATTJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|179350416|gb|ACB84686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Natranaerobius thermophilus JW/NM-WN-LF] Length = 420 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI L+ YIIGQ++AK+A+++A+ N ++R A +D E+ NILL+GPTGVGK Sbjct: 64 PQEIYEILNDYIIGQEEAKKALSVAVYNHYKRVNNEAKKKDDVEIQKSNILLLGPTGVGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLAKILNVPFAMADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIVYIDEIDKVARKTDNPSITRDVSGEGVQQALLRILEGTKASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 237 DTTNILFICGGAFDGIDKIIQNRIGKKGLGFGAEVQSAKDEGIGEILSKVLPQDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L +L++ IL + ++ L+ QY++L + +G+ L+ ED++ A+A Sbjct: 297 IPEFVGRIPVISSLDALDEDALVRILVEPKNALVKQYQKLFEIDGVELEMQEDALRAIAR 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ N+ GAR L+ ++E L DI + + + I E V Sbjct: 357 EAIERNT-----GARGLRAIVEEHLNDIMYDLPSMDDVNKCIITEEV 398 >gi|91783521|ref|YP_558727.1| ATP-dependent protease ATP-binding subunit [Burkholderia xenovorans LB400] gi|123358810|sp|Q13Z14|CLPX_BURXL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91687475|gb|ABE30675.1| ClpX, ATPase regulatory subunit [Burkholderia xenovorans LB400] Length = 423 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 SPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEVALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGISKVI 397 >gi|21230440|ref|NP_636357.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769566|ref|YP_244328.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. 8004] gi|188992774|ref|YP_001904784.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthomonas campestris pv. campestris str. B100] gi|23813857|sp|Q8PBY5|CLPX_XANCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81304479|sp|Q4URL5|CLPX_XANC8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229485950|sp|B0RTF5|CLPX_XANCB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21112002|gb|AAM40281.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574898|gb|AAY50308.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167734534|emb|CAP52744.1| ATP-dependent Clp protease ATP binding subunit [Xanthomonas campestris pv. campestris] Length = 428 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQARSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L + E + L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|217979045|ref|YP_002363192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella silvestris BL2] gi|254763855|sp|B8EIL3|CLPX_METSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|217504421|gb|ACK51830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylocella silvestris BL2] Length = 421 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLEKIISTRGKGTSIGFGATVQAPDDRRTGEIFRKVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + ILT+ ++ L+ QY+ L + E L F +++++ +A Sbjct: 298 IPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L + VVI + V Sbjct: 358 KAIERRT-----GARGLRSIMEGILLDTMFDLPGLDSVEQVVIGPDVV 400 >gi|78043800|ref|YP_359189.1| ATP-dependent protease ATP-binding subunit ClpX [Carboxydothermus hydrogenoformans Z-2901] gi|77995915|gb|ABB14814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Carboxydothermus hydrogenoformans Z-2901] Length = 418 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 P+EI + LD+Y+IGQ++AK+ +A+A+ N ++R L + D EL NIL++GPTG GK Sbjct: 59 KPQEIKAYLDQYVIGQEEAKKVLAVAVYNHYKRINLGGKIDDVELSKSNILMLGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 119 TLLAQTLARFLNVPFAIADATALTEAGYVGEDVENILLKLIQNA 162 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 172 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 231 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 232 DTTNILFIVGGAFEGIEKIIQNRIGKKGLGFGAEIKPKREQNVGEILKHIM-PEDLLKFG 290 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L +L++ ILT+ ++ LI QY++L + +G+ L+F ED++ A+A Sbjct: 291 LIPEFVGRLPIIVTLDALDEDALVRILTEPKNALIKQYQKLFELDGVTLEFEEDALRAIA 350 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E V+ D+ + Sbjct: 351 QKAIKRNT-----GARGLRAILEEVMLDVMY 376 >gi|70726252|ref|YP_253166.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus haemolyticus JCSC1435] gi|123660428|sp|Q4L715|CLPX_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|68446976|dbj|BAE04560.1| protease ClpX [Staphylococcus haemolyticus JCSC1435] Length = 420 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDEVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLELDNVELEFTEEALAAVSEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L++++E L DI + ++ T V+ Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVV 391 >gi|167042803|gb|ABZ07521.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine microorganism HF4000_ANIW137I15] Length = 414 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+E+ + LD +++GQ+ AKR +++A+ N ++R + DL D E+ N+LL+GPTG GKT Sbjct: 64 PKEVKATLDEFVVGQELAKRVLSVAIHNHYKRIEANVDLNDVEIQKSNVLLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +AR+ PF V+ T TE GYVG +VE II L+ A V+ + R Sbjct: 124 LLAQTMARILDVPFAIVDATTLTEAGYVGEDVENIILKLLQNADYDVQRAER 175 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 176 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFLQV 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T H+ F+ GAF +P DLL Sbjct: 236 DTAHVFFVCGGAFTGLDQIIQRRVGSRSMGFEAEIRSRDDMSIGEIFSKVQPEDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +L L++ +L + ++ L+ QYK L + E + L FT++S+ A+A Sbjct: 296 IPEFVGRLPVIAYLNELDEEALVQVLCEPKNALVKQYKRLFEFENVALRFTDESLVAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A+ + GAR L++++E ++ D + S +D++E V Sbjct: 356 EAMKRKT-----GARGLRSILEEIMLDTMYEIPSRADVKECVV 393 >gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium sp. R2A62] gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium sp. R2A62] Length = 422 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD Y+IGQ AKR +++A+ N ++R A EL NI+LVGPTG G Sbjct: 65 TPKEICEVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNIMLVGPTGCG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 66/246 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 239 DTTNILFIVGGAFAGLDKIIAQRGKGSAMGFGADVREKNDKGIGELFLDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 299 IPEFVGRLPVLATLQDLDEDALITILTEPKNALVKQYQRLFELEETALTFTDDALTAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLHIG 424 A+ + GAR L++++E +L + F + E+ V DA+ + +H G Sbjct: 359 RAIERKT-----GARGLRSILEDILLETMFDLPGMDSVTEVVVNEEAVTSDAQPLMIH-G 412 Query: 425 DFPSET 430 + ET Sbjct: 413 EADKET 418 >gi|325922709|ref|ZP_08184449.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas gardneri ATCC 19865] gi|325546826|gb|EGD17940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Xanthomonas gardneri ATCC 19865] Length = 428 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PREI+ LD+Y+IGQ AKR +A+A+ N ++R + + EL NILLVGPTG GKT Sbjct: 69 PREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSKNDEVELAKSNILLVGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T +ILFI GAF V + P DL+ Sbjct: 241 DTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKF 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ ++ + Q+K+L EG+ L+F D++ A+ Sbjct: 301 GLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRPDALSAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A A+ + GAR L+T++E VL D + + + V+ E V H Sbjct: 361 AKKALKRKT-----GARGLRTIVESVLLDTMYELPSQENVSKVVVDESVIEH 407 >gi|308270288|emb|CBX26900.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured Desulfobacterium sp.] Length = 592 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 8/113 (7%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDEL---MPK 54 KL F+ P ++S LD+YII Q +AK +A + + R P DL D++ + Sbjct: 56 KLNFDLKPESLISYLDQYIIRQDNAKAVLATKICTHYNRIKTFNSYP-DLADDMFCGVKN 114 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+L++GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE ++RDLV Sbjct: 115 NVLMLGPTGVGKTYMIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLV 167 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 67/222 (30%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS----- 290 D+I++ + YGIV++DE DKI + + G VSR GVQR LL +E + V K Sbjct: 172 DNIELAQ-YGIVYIDEIDKIASSHNLIGADVSRTGVQRALLKPLEETEVDMKVPHDPISM 230 Query: 291 -----------------INTDHILFIASGAF----------------------------- 304 +NT +ILFI SGAF Sbjct: 231 MQEIERFRRTGKKNRRVVNTKNILFIVSGAFFDLAKIIQKRIANNTIGFGSTTPKTRSYA 290 Query: 305 ----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 HV + DL+ E GR PVR L+ L+ +D IL++ + +IL K Sbjct: 291 NVLKHV-KSEDLIEFGFESEFVGRLPVRAVLEDLDNNDLFEILSNPNNPIILGKKLDFAA 349 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 GI + F E ++ LA+ A + N IGAR L + +E+ L Sbjct: 350 YGIDIKFEEKALRILANRAFDEN-----IGARGLVSAIEKAL 386 >gi|303231335|ref|ZP_07318069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-049-V-Sch6] gi|302513931|gb|EFL55939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella atypica ACS-049-V-Sch6] Length = 417 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD+Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 62 TPKEIKAHLDQYVIGQDDAKVSLAVAVYNHYKRLQTDNVVDDVELQKSNVLFIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRAEERDVSAILKEVVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L F +D+++ +AD Sbjct: 295 IPEFIGRLPVMVTLDLLDRDALVQILTKPKNALTKQYEKILSLDGVELTFEDDALEEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ ++E+V++ + + + Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKYVMYEVPSM 384 >gi|328543682|ref|YP_004303791.1| ATP-dependent Clp protease ATP-binding subunit ClpX [polymorphum gilvum SL003B-26A1] gi|326413426|gb|ADZ70489.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polymorphum gilvum SL003B-26A1] Length = 421 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPQEIRHVLDDYVIGQNSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF +V P D L Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGRKTSIGFKANVVGPEDRRIGELFSELEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALVKQYQRLFEMENVDLSFHEEALKAVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D + L+ K VVI E V Sbjct: 358 RAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVV 400 >gi|269214372|ref|ZP_05986447.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria lactamica ATCC 23970] gi|269209943|gb|EEZ76398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria lactamica ATCC 23970] Length = 442 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P + EL NILL+GPTG GK Sbjct: 94 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 153 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 154 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 194 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ ++ Sbjct: 207 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 266 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 267 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 326 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E ++ ++A Sbjct: 327 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIA 386 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 387 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 425 >gi|92114167|ref|YP_574095.1| ATP-dependent protease ATP-binding subunit [Chromohalobacter salexigens DSM 3043] gi|122419775|sp|Q1QVW2|CLPX_CHRSD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91797257|gb|ABE59396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chromohalobacter salexigens DSM 3043] Length = 426 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 5/103 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64 +PREI + LD Y+IGQ AKR +++A+ N ++R L AD++ E L NILL+GPTG Sbjct: 67 APREIRNTLDDYVIGQDRAKRVLSVAVYNHYKR--LRADVKSEDVELGKSNILLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ +ARL PF + T TE GYVG +VE II+ L+ Sbjct: 125 GKTLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTASIPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T ++LFI GAF V R P DL Sbjct: 240 DTSNMLFIVGGAFAGLEKVIRDRVEKGGIGFNAEVKSKDSEKAMGDILAGVEPEDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ ILT+ +++LI QY L EG+ L+F ED++ A+A Sbjct: 300 LIPEFVGRVPVIATLTELSEEALIQILTEPKNSLIKQYVHLFAMEGVELEFREDALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ N+ GAR L++++E VL D + L++ T VVIDA + Sbjct: 360 HKAMARNT-----GARGLRSILESVLLDTMYEVPSLEDVTKVVIDASVI 403 >gi|126441050|ref|YP_001059355.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei 668] gi|126452859|ref|YP_001066626.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 1106a] gi|134277221|ref|ZP_01763936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 305] gi|162210030|ref|YP_333873.2| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia pseudomallei 1710b] gi|167719123|ref|ZP_02402359.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei DM98] gi|167738117|ref|ZP_02410891.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 14] gi|167815309|ref|ZP_02446989.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 91] gi|167823711|ref|ZP_02455182.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 9] gi|167836266|ref|ZP_02463149.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis MSMB43] gi|167845262|ref|ZP_02470770.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei B7210] gi|167893806|ref|ZP_02481208.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 7894] gi|167902258|ref|ZP_02489463.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei NCTC 13177] gi|167910497|ref|ZP_02497588.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei 112] gi|167918526|ref|ZP_02505617.1| ATP-dependent protease ATP-binding subunit [Burkholderia pseudomallei BCC215] gi|217421598|ref|ZP_03453102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 576] gi|226197310|ref|ZP_03792887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pakistan 9] gi|237812683|ref|YP_002897134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei MSHR346] gi|242316368|ref|ZP_04815384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106b] gi|254179428|ref|ZP_04886027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1655] gi|254189183|ref|ZP_04895694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pasteur 52237] gi|254197477|ref|ZP_04903899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei S13] gi|254260834|ref|ZP_04951888.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710a] gi|254297313|ref|ZP_04964766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 406e] gi|61211439|sp|Q63V40|CLPX_BURPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214765|sp|A3NWA5|CLPX_BURP0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214766|sp|A3NAI4|CLPX_BURP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126220543|gb|ABN84049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 668] gi|126226501|gb|ABN90041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106a] gi|134250871|gb|EBA50950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 305] gi|157806801|gb|EDO83971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 406e] gi|157936862|gb|EDO92532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pasteur 52237] gi|169654218|gb|EDS86911.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei S13] gi|184209968|gb|EDU07011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1655] gi|217395340|gb|EEC35358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 576] gi|225930689|gb|EEH26699.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei Pakistan 9] gi|237506116|gb|ACQ98434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei MSHR346] gi|242139607|gb|EES26009.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1106b] gi|254219523|gb|EET08907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710a] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397 >gi|87309270|ref|ZP_01091406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Blastopirellula marina DSM 3645] gi|87287909|gb|EAQ79807.1| ATP-dependent Clp protease ATP-binding subunit clpX [Blastopirellula marina DSM 3645] Length = 425 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 3/109 (2%) Query: 5 FNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61 FN SPREI++ L+ Y+IGQ +AK+ +++A+ N ++R + A+ + E+ NI+L GP Sbjct: 70 FNHVPSPREIMTHLNEYVIGQGNAKKVLSVAVHNHYKRLMMGAEGSEVEIEKSNIMLAGP 129 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT ++R LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 130 TGSGKTLLARTLARMLNVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 178 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 64/220 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 G++++DE DKI + N + ++R EGVQ+ LL ++EG+ + +Y Sbjct: 188 GVLYIDEIDKI--GKTSNNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYI 245 Query: 290 SINTDHILFIASGAF----------------------HVSRPAD---------------- 311 I+T +ILFI G F AD Sbjct: 246 QIDTSNILFICGGTFVGIEEIVRKRLGRKSIGFGQQTGYKSEADSAECLRQVNSDDILEF 305 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE+ GR PV L+ L+ + + +LT+ ++ LI QY++L + E LDF++D+++A+ Sbjct: 306 GLIPELVGRLPVVCSLEPLDVAGLKSVLTEPKNALIKQYQQLFEMENAQLDFSDDALEAI 365 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 A A+N + GAR L++++E V+ DI F DL EK Sbjct: 366 ALRAMNKGT-----GARGLRSIIEEVMLDIMF---DLPEK 397 >gi|134295957|ref|YP_001119692.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia vietnamiensis G4] gi|166214767|sp|A4JF04|CLPX_BURVG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|134139114|gb|ABO54857.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia vietnamiensis G4] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQERDAGEVLRETEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402 >gi|288929612|ref|ZP_06423456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella sp. oral taxon 317 str. F0108] gi|288329117|gb|EFC67704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella sp. oral taxon 317 str. F0108] Length = 410 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ Y + Sbjct: 176 GIVFVDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTTVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 236 DTRNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVRKIDKGDLMKYILPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R IL + ++++I QY++L K +GI L F +++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDREALRRILVEPKNSIIKQYEKLFKMDGIKLSFATETLDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E V+ D F + K + +Y R Sbjct: 356 AVEYK-----LGARGLRSIVEAVMMDAMFEVPSKKVKQFDVTLQYAR 397 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67 P +I + LD+YIIGQ +AKR +++++ N ++R + P D E+ NI++VG TG GKT Sbjct: 64 PMDIKAYLDQYIIGQDEAKRYLSVSVYNHYKRLEQPIGDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LMARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 >gi|161524523|ref|YP_001579535.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|189350721|ref|YP_001946349.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|221198215|ref|ZP_03571261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2M] gi|221209203|ref|ZP_03582195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2] gi|221215058|ref|ZP_03588025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD1] gi|238687053|sp|A9AJR1|CLPX_BURM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160341952|gb|ABX15038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans ATCC 17616] gi|189334743|dbj|BAG43813.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia multivorans ATCC 17616] gi|221164994|gb|EED97473.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD1] gi|221170941|gb|EEE03396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2] gi|221182147|gb|EEE14548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia multivorans CGD2M] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQDRDAGEVLRDVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402 >gi|254252157|ref|ZP_04945475.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa AUO158] gi|124894766|gb|EAY68646.1| ATP-dependent protease ATP-binding subunit [Burkholderia dolosa AUO158] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIIDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402 >gi|121605847|ref|YP_983176.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas naphthalenivorans CJ2] gi|166214799|sp|A1VRH7|CLPX_POLNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120594816|gb|ABM38255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas naphthalenivorans CJ2] Length = 421 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + + EL NILL+GPTG Sbjct: 67 TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKESAKKDDVELTKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLL 169 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFSGLEKVIENRTEASGIGFGAAVKSKKARSLTEAFKDVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ ++ Q+ +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVIATLAELSEDALVQILTEPKNAVVKQFSKLLAMEGVDLEIRPSALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386 >gi|167562415|ref|ZP_02355331.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis EO147] gi|167569598|ref|ZP_02362472.1| ATP-dependent protease ATP-binding subunit [Burkholderia oklahomensis C6786] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++E+ L D+ + L+ Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLK 391 >gi|258542725|ref|YP_003188158.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01] gi|256633803|dbj|BAH99778.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01] gi|256636862|dbj|BAI02831.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-03] gi|256639915|dbj|BAI05877.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-07] gi|256642971|dbj|BAI08926.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-22] gi|256646026|dbj|BAI11974.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-26] gi|256649079|dbj|BAI15020.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-32] gi|256652066|dbj|BAI18000.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655123|dbj|BAI21050.1| Clp protease ATP-binding subunit ClpX [Acetobacter pasteurianus IFO 3283-12] Length = 421 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +++A+ N ++R A D E+ NILL+GPTG GK Sbjct: 64 TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISKKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ++LFI GAF H P DL+ Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGTNIGFGADVRAPDERKTGEILHDVEPEDLMKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT+ ++ L+ QY+ L + E + L+FT+D++ A+AD Sbjct: 297 IPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMENVQLNFTDDALKAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ V GAR L++++E +L F L+ Sbjct: 357 RAI-----VRKTGARGLRSILESILMSTMFDLPGLE 387 >gi|154506029|ref|ZP_02042767.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149] gi|153793528|gb|EDN75948.1| hypothetical protein RUMGNA_03571 [Ruminococcus gnavus ATCC 29149] Length = 424 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ +AK+ +++A+ N ++R +DL +L NIL++GPTG GK Sbjct: 65 LTPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMAGSDLGVDLQKSNILMLGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVESILLKVIQAA 168 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 177 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 236 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF H P DL Sbjct: 237 IDTTNILFICGGAFEGIDKIIETRLDKKSIGFNAEIAKKHEEDVDVLLHQVLPQDLVKFG 296 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L L+K ILT+ +S+L+ QY++LM+ +G+ L+F + ++DA+A Sbjct: 297 LIPELVGRVPVTVSLDLLDKEALIRILTEPKSSLVKQYQKLMELDGVKLEFDKAALDAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + ++ + GAR L+ +ME ++ D F Sbjct: 357 ETSLARKT-----GARGLRAIMEDIMMDTMF 382 >gi|297544143|ref|YP_003676445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841918|gb|ADH60434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 424 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHI-MPEDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L+ QY++L + +G+ L+F + +++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D A+ + GAR L+ ++E ++ D+ + +S+ EK ++ + Sbjct: 354 DKALERKT-----GARGLRAILEEIMLDVMYEIPSSENIEKCIITE 394 >gi|289577855|ref|YP_003476482.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermoanaerobacter italicus Ab9] gi|289527568|gb|ADD01920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter italicus Ab9] Length = 424 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRLKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGLEKIIESRIGKKTLGFGSDVQSRKEKNIGEILSHI-MPEDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L+ QY++L + +G+ L+F + +++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLDKEDLVRILTEPKNALVKQYEKLFELDGVKLEFDKKALNLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D A+ + GAR L+ ++E ++ D+ + +SD EK ++ + Sbjct: 354 DKALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394 >gi|167586933|ref|ZP_02379321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ubonensis Bu] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402 >gi|78066692|ref|YP_369461.1| ATP-dependent protease ATP-binding subunit [Burkholderia sp. 383] gi|107028899|ref|YP_625994.1| ATP-dependent protease ATP-binding subunit [Burkholderia cenocepacia AU 1054] gi|116689943|ref|YP_835566.1| ATP-dependent protease ATP-binding subunit [Burkholderia cenocepacia HI2424] gi|170733281|ref|YP_001765228.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia cenocepacia MC0-3] gi|206560358|ref|YP_002231122.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia cenocepacia J2315] gi|122977698|sp|Q1BH84|CLPX_BURCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123756153|sp|Q39FE9|CLPX_BURS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214761|sp|A0K846|CLPX_BURCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238688580|sp|B1JTU9|CLPX_BURCC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238693098|sp|B4EBM2|CLPX_BURCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|77967437|gb|ABB08817.1| ClpX, ATPase regulatory subunit [Burkholderia sp. 383] gi|105898063|gb|ABF81021.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia AU 1054] gi|116648032|gb|ABK08673.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia HI2424] gi|169816523|gb|ACA91106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia cenocepacia MC0-3] gi|198036399|emb|CAR52295.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia cenocepacia J2315] gi|325518992|gb|EGC98515.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia sp. TJI49] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 402 >gi|293366377|ref|ZP_06613056.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|291319502|gb|EFE59869.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus epidermidis M23864:W2(grey)] Length = 420 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+F+E+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|329114675|ref|ZP_08243434.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter pomorum DM001] gi|326696155|gb|EGE47837.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetobacter pomorum DM001] Length = 421 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +++A+ N ++R A D E+ NILL+GPTG GK Sbjct: 64 TPREICKVLDDYVIGQAQAKKVLSVAVHNHYKRLTQVAKAGDVEIAKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 176 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 177 GIVYIDEIDKISKKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ++LFI GAF H P DL+ Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGTNIGFGADVRAPDERKTGEILHDVEPEDLMKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT+ ++ L+ QY+ L + E + LDFT+D++ A+AD Sbjct: 297 IPEFIGRLPVIATLGDLDEAALIKILTEPKNALVKQYQRLFQMEDVQLDFTDDALKAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ V GAR L++++E +L F L+ Sbjct: 357 RAI-----VRKTGARGLRSILESILMSTMFDLPGLE 387 >gi|307128584|ref|YP_003880614.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia muelleri CARI] gi|306483046|gb|ADM89916.1| ATP-dependent protease ATP-binding subunit [Candidatus Sulcia muelleri CARI] Length = 344 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 56/232 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI ++ I VS EGVQ+ LL ++EG+ V+ K + Sbjct: 114 GIVFIDEIDKISRKNENTSITRDVSGEGVQQALLKILEGTIVNVPPNVGRKHPDQKMIKL 173 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLLP 314 NT +ILFIA GAF H + L+P Sbjct: 174 NTKNILFIAGGAFEGLKDIISNRLNISTIGFKTKFDKKINDKNLLKFVGTHDLKKFGLIP 233 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ +L SL++ + IL + ++ +I QYK+L + I L FT+ +ID + D A Sbjct: 234 ELIGRLPIISNLNSLDRESLKRILLEPKNAIIKQYKKLFYMDKINLKFTDSAIDLIVDKA 293 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 + L+ +GAR L+++ + +++D F+ ++E +++ID V+ + ++ Sbjct: 294 IKLS-----LGARGLKSICDNIIKDYMFNIDSIKE-SLIIDKFDVKCQLNNW 339 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MKL + P++I LD+Y+IGQ+DAK+ +++A+ N ++R L L DE+ N+L++G Sbjct: 1 MKLNY---PKKIKDFLDQYVIGQEDAKKTISVAVYNHYKRIYL---LNDEIDKSNVLMIG 54 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT I++ +++ PF + T TE GYVG +VE I+ L+ A Sbjct: 55 DTGTGKTLIAKSISKFLNVPFAIADATSLTEAGYVGEDVESILTKLLQSA 104 >gi|209885040|ref|YP_002288897.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5] gi|229484078|sp|B6JGU8|CLPX_OLICO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209873236|gb|ACI93032.1| ATP-dependent Clp protease [Oligotropha carboxidovorans OM5] Length = 424 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLEKIISSRGRTTSIGFAASVLAPEDRRTGEIFREVEPEDLLKYGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ + IL + ++ L+ QY+ L + E + L F ++++ A+A Sbjct: 298 IPEFVGRLPVVATLEDLDEASLKKILVEPKNALVKQYQRLFEMENVELTFADEALGAVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|186475777|ref|YP_001857247.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia phymatum STM815] gi|238691290|sp|B2JGL6|CLPX_BURP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|184192236|gb|ACC70201.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia phymatum STM815] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDETALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYELPAMKGVSKVI 397 >gi|115351961|ref|YP_773800.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia ambifaria AMMD] gi|170702051|ref|ZP_02892967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria IOP40-10] gi|171320791|ref|ZP_02909798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MEX-5] gi|172060887|ref|YP_001808539.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia ambifaria MC40-6] gi|122322953|sp|Q0BEF7|CLPX_BURCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689158|sp|B1YRZ4|CLPX_BURA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115281949|gb|ABI87466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria AMMD] gi|170133037|gb|EDT01449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria IOP40-10] gi|171093961|gb|EDT39075.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MEX-5] gi|171993404|gb|ACB64323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia ambifaria MC40-6] Length = 423 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPAMKGVSKVIIDENV 402 >gi|319400990|gb|EFV89209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis FRI909] Length = 420 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+F+E+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|239637528|ref|ZP_04678500.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus warneri L37603] gi|239596746|gb|EEQ79271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus warneri L37603] gi|330684285|gb|EGG96023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis VCU121] Length = 420 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+A+++A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKALSVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 55/223 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY ++++ + + L F+E+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDNVELVFSEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + + GAR L++++E L DI + ++ T V+ E Sbjct: 357 IARKT-----GARGLRSIIEEALIDIMYDVPSSEDVTKVVITE 394 >gi|39996890|ref|NP_952841.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter sulfurreducens PCA] gi|61211572|sp|Q74C83|CLPX_GEOSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39983778|gb|AAR35168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sulfurreducens PCA] Length = 417 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGVG 65 PREI LD Y+IGQ AK+ +A+A+ N ++R + P+D+ E+ NILL+GPTG G Sbjct: 66 PREIKDVLDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II +L+ A Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTTNILFICGGAFAGLDSIIQQRIGVKKLGFGADVKSKVEKRAGELLTEVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL + ++ LI QY++L + E + L FT+ S+ A++ Sbjct: 298 IPEFIGRLPVLATLRELDETAMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLVAISR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S K VVI+ + + Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVINEDVI 400 >gi|27468267|ref|NP_764904.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis ATCC 12228] gi|57867149|ref|YP_188812.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus epidermidis RP62A] gi|242242938|ref|ZP_04797383.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis W23144] gi|251811069|ref|ZP_04825542.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282875905|ref|ZP_06284772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis SK135] gi|38257569|sp|Q8CNY5|CLPX_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71153013|sp|Q5HNM9|CLPX_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27315813|gb|AAO04948.1|AE016748_182 protease ClpX [Staphylococcus epidermidis ATCC 12228] gi|57637807|gb|AAW54595.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis RP62A] gi|242233539|gb|EES35851.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis W23144] gi|251805404|gb|EES58061.1| ATP-dependent protease ATP-binding subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281294930|gb|EFA87457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis SK135] gi|329724687|gb|EGG61193.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis VCU144] gi|329733781|gb|EGG70107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis VCU045] gi|329737339|gb|EGG73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus epidermidis VCU028] Length = 420 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+F+E+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L DI + Sbjct: 357 IERKT-----GARGLRSIIEEALIDIMY 379 >gi|312869037|ref|ZP_07729214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus oris PB013-T2-3] gi|311095463|gb|EFQ53730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus oris PB013-T2-3] Length = 416 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (3%) Query: 2 KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNIL 57 K TF +P EIV ELD Y+IGQ DAK+ +A+A+ N ++R + EL NI Sbjct: 56 KQTFRVPTPAEIVGELDDYVIGQADAKKTLAVAVYNHYKRVNAMMTGENDETELQKSNIA 115 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++GPTG GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 116 VIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTSNILFIVGGAFDGIENIVKERIGEKTIGFGTSSSARDNITEKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL+K +G L FT+ ++ A+A Sbjct: 297 LIPEFIGRLPVMTALQKLDEQDLIWILTEPKNALVKQYQELIKLDGSELSFTDGALRAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A+ N+ GAR L++++E V++D+ F Sbjct: 357 ELAIKRNT-----GARGLRSIIEEVMQDVMF 382 >gi|90423894|ref|YP_532264.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] gi|115524518|ref|YP_781429.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] gi|122296221|sp|Q07NN5|CLPX_RHOP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122476340|sp|Q215J1|CLPX_RHOPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|90105908|gb|ABD87945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB18] gi|115518465|gb|ABJ06449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris BisA53] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|83721081|ref|YP_442644.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia thailandensis E264] gi|167581578|ref|ZP_02374452.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis TXDOH] gi|167619694|ref|ZP_02388325.1| ATP-dependent protease ATP-binding subunit [Burkholderia thailandensis Bt4] gi|257138855|ref|ZP_05587117.1| ATP-dependent protease ATP-binding subunit ClpX [Burkholderia thailandensis E264] gi|123536902|sp|Q2SWQ5|CLPX_BURTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83654906|gb|ABC38969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia thailandensis E264] Length = 423 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 361 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 397 >gi|30248063|ref|NP_840133.1| ATP-dependent protease ATP-binding subunit [Nitrosomonas europaea ATCC 19718] gi|46576514|sp|Q82Y56|CLPX_NITEU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|30179948|emb|CAD83943.1| clpX; ATP-dependent protease (ATP-binding specificity subunit) [Nitrosomonas europaea ATCC 19718] Length = 426 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 75/116 (64%), Gaps = 4/116 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63 +P EI LD+Y+IGQ+ AK+ +++A+ N ++R + + + + EL NILL+GPTG Sbjct: 65 TPHEIRETLDQYVIGQESAKKILSVAVYNHYKRLKNLSKVNNGDDVELSKSNILLIGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LARL PF+ + T TE GYVG +VE II+ L+ + V +++R Sbjct: 125 SGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLLQKCNHDVEKAQR 180 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ + ++ I Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTALVPPQGGRKHPNQEFIQI 240 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313 +T +ILFI GAF + R P DL+ Sbjct: 241 DTTNILFICGGAFDGIDKIIRGRSEKSGIGFGADVINQNDRKELNKILKDIEPEDLIKYG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDAL 370 PE GR PV L LN++ IL + ++ LI QY +L E G+ L+F E ++ A+ Sbjct: 301 LIPEFVGRLPVVATLSELNEAALIQILVEPKNALIKQYNKLFSMEGGVELEFREQALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A A++ + GAR L++++E L DI + ++ + V+ Sbjct: 361 ARKALSRKT-----GARGLRSILEETLLDIMYDLPSIENVSKVV 399 >gi|48927362|emb|CAG34253.1| hypothetical protein [Stenotrophomonas maltophilia] Length = 112 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 75/112 (66%) Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L +L+K DF ILT+ ++ L QY+ L+ TEG+ + FT D+I+ LA++A +N +IG Sbjct: 1 LGALSKGDFVRILTEPKAALAKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIG 60 Query: 386 ARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 ARRL TV+ER+L+ +S+ A D +++ ID+ YV H+G+ + D+ +IL Sbjct: 61 ARRLHTVLERLLDSLSYEAPDRDGESLAIDSAYVDKHLGELVQDPDLSRYIL 112 >gi|296271573|ref|YP_003654204.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arcobacter nitrofigilis DSM 7299] gi|296095748|gb|ADG91698.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter nitrofigilis DSM 7299] Length = 415 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 63/102 (61%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P +I LD Y+IGQ DAK+ +A+AL N ++R P EL NI+L+GPTG GKT Sbjct: 60 PIKIKEHLDEYVIGQDDAKKVLAVALYNHYKRIDKPIVKNVELEKSNIMLIGPTGSGKTL 119 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 LAKSLAKIMDVPFAVADATALTEAGYVGEDVESILSRLLAAA 161 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 51/221 (23%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSV------STKYGS-----I 291 GIV++DE DKI + + +G VS EGVQ+ LL ++EG+ V S K S Sbjct: 171 GIVYIDEIDKIANKSESATSGRDVSGEGVQQGLLKILEGAEVYVPVKGSRKNSSAETIIF 230 Query: 292 NTDHILFIASGAFHVSRPAD--------------------------------LLPEIQGR 319 +T H+LFI GAF R + L+PE GR Sbjct: 231 DTTHVLFICGGAFVGLRKDENKEKSTVMGFLNKDNKQKDKKDIEAKELISFGLIPEFIGR 290 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L+K D +L + ++ + QY+ L + +G+ L F + ++D +A++A Sbjct: 291 IPVIAELNKLSKDDLIRVLKEPKNAITKQYEILFELDGVDLKFDDKALDEIANIAYE--- 347 Query: 380 TVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 D+GAR L+ ++E+++ + ++ S+ + VI EY+ Sbjct: 348 --KDVGARGLRGIIEKLMLPLQYTIPSEENLGSCVITQEYI 386 >gi|255316618|ref|ZP_05358201.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-76w55] Length = 379 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 49/223 (21%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS------SVSTKYGSINTDHIL 297 YGIVFLDE DK+ ++ V +EGVQ+ LL L+EG+ ++ Y I+T +IL Sbjct: 157 YGIVFLDEIDKLAKNNTTYKNQVGKEGVQQALLKLIEGTICKIQDDITKDYVEIDTTNIL 216 Query: 298 FIASGAF-------------------------HVSRPAD---------------LLPEIQ 317 FI GAF S D ++PE Sbjct: 217 FICGGAFVGIEDIIKERLHKKTIGFKSSLSLEETSLTKDEIRKNINIDDLYNFGMIPEFL 276 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GRFPV +L++L+ +LIL +E LI Y +L + + L+FTE+++ +A++A+ Sbjct: 277 GRFPVICNLETLDIEKVKLILK-SEEGLIGDYNKLFELQDKELEFTEEALSLIANLAIEE 335 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 N + +GAR L+T + + ++ F AS+ E+ +I E V+ Sbjct: 336 NVLM--LGARGLKTFLSPFMTELMFCASNDNEQKYLITEERVK 376 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 35/254 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P +I+ +D++IIGQ AK+ +A + N + D+ NILL G +G GKT Sbjct: 51 PIDIIKYMDKFIIGQDKAKKMIATTIYNHYLSIINKVDVE----KNNILLTGASGTGKTL 106 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVR 123 I++ LA PF+ + TE GY+G++VE II L + A + +++ DE+ Sbjct: 107 IAKTLANFLDVPFVVADANTLTEAGYIGKDVESIIASLYNKANKNLNKTKYGIVFLDEID 166 Query: 124 EQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDIP 182 + A N + VGK KL +G I + DI D +N I Sbjct: 167 KLAKNNTTYK---NQVGKEGVQQA----LLKLIEGTICKIQDDITKDYVEIDTTNILFIC 219 Query: 183 GGASVGILNL--SELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 GGA VGI ++ L K +G K +S+++ L +DE + I++D ++ Sbjct: 220 GGAFVGIEDIIKERLHKKTIGF----KSSLSLEE--TSLTKDEIRKNINIDDLY------ 267 Query: 241 VENYGIV--FLDEF 252 N+G++ FL F Sbjct: 268 --NFGMIPEFLGRF 279 >gi|260060593|ref|YP_003193673.1| ATP-dependent protease ATP-binding subunit ClpX [Robiginitalea biformata HTCC2501] gi|88784723|gb|EAR15892.1| ATP-dependent protease ATP-binding subunit [Robiginitalea biformata HTCC2501] Length = 411 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDELDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT++ILFIA GAF ++R P DL + Sbjct: 235 NTENILFIAGGAFDGIERIITRRLNMQAIGYSASKREETLDAENVLQYIIPKDLKEFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L++ R ILT+ + +I QY++L +GI T+ ++D + D Sbjct: 295 PEIIGRLPVLTHMNPLDRKTLRSILTEPRNAIIKQYEKLFAMDGITFRITDQALDFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E V D F +E + Y Sbjct: 355 AIEYK-----LGARGLRSLCEAVFTDAMFELPSTEETEFKVTKPY 394 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVGK 66 P EI LD Y+IGQ+ K+ +++A+ N ++R P+ DE+ NI++VG TG GK Sbjct: 62 PVEIKEFLDTYVIGQERTKKVLSVAVYNHYKRLLQPSSKEDEIEIQKSNIVMVGQTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165 >gi|108804373|ref|YP_644310.1| ATP-dependent protease ATP-binding subunit ClpX [Rubrobacter xylanophilus DSM 9941] gi|108765616|gb|ABG04498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rubrobacter xylanophilus DSM 9941] Length = 420 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 PREI L+ Y+IGQ++AK+ +++A+ N ++R Q+ A+ D EL NILL+GPTG GK Sbjct: 61 PREINRILNEYVIGQEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TLLAETLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 164 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 64/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 174 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQI 233 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV +P DLL Sbjct: 234 DTKNILFICGGAFGGLEDIIRQRIGKRSIGFSSGLDRRLEEDSDEILRHV-QPEDLLKYG 292 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L SL + D ILT+ ++ L+ QY+++ + + + L FT++++ A+A Sbjct: 293 LIPEFVGRLPVISTLHSLQERDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIA 352 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + A+ + GAR L++++E L + S SD+ + V+DA+ VR Sbjct: 353 EQALERGT-----GARGLRSILEAALLPTMYELPSRSDVTK--CVVDADTVR 397 >gi|316933822|ref|YP_004108804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] gi|315601536|gb|ADU44071.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodopseudomonas palustris DX-1] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIISGRGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDETSLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|254463915|ref|ZP_05077326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium Y4I] gi|206684823|gb|EDZ45305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium Y4I] Length = 422 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGSDI--ELAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 178 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 65/238 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIISARGKGSAMGFGADVRDNDERGVGEVFKDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E LDFT++++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDTELDFTDEALKAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL--------QEKTVVIDAEYVRLH 422 A+ + GAR L+++ME +L + F + E+ V DA+ + +H Sbjct: 359 KAIQRKT-----GARGLRSIMEDILLNTMFDLPGMDSVTKVVVNEEAVTSDAQPLMIH 411 >gi|119473284|ref|ZP_01614936.1| ATP-dependent protease ATP-binding subunit [Alteromonadales bacterium TW-7] gi|119444507|gb|EAW25827.1| ATP-dependent protease ATP-binding subunit [Alteromonadales bacterium TW-7] Length = 427 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+ +++A+ N ++R + + +D EL NILL+GPTG GKT Sbjct: 70 PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH-------------------VS-----------------RPADL--- 312 +T ILFI GAF VS P DL Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVSVKESAETRSLSETFKDVEPEDLVKY 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ + Q+ L E + L+F +D++ A+ Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALSAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ V GAR L++++E +L D + + + VVID ++ Sbjct: 362 AHKAM-----VRKTGARGLRSIVEGILLDTMYELPSMDDVSKVVIDETVIK 407 >gi|329733101|gb|EGG69438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 21193] Length = 420 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTI 397 >gi|153813469|ref|ZP_01966137.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174] gi|149830413|gb|EDM85505.1| hypothetical protein RUMOBE_03889 [Ruminococcus obeum ATCC 29174] Length = 437 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ +AK+A+++A+ N ++R +L EL NIL++GPTG GK Sbjct: 66 LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASKNLDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 57/212 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 177 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236 Query: 290 SINTDHILFIASGAFH--------------------VS--------------RPAD---- 311 I+T +ILFI GAF VS P D Sbjct: 237 QIDTTNILFICGGAFDGIEKTIEARQDTKSIGFGADVSVQEERNIGEILKDVMPEDFIKY 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ V L L++ IL + +++L QY +L + +G+ L+F E+++ + Sbjct: 297 GLIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFQEEALKEV 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A ++ + GAR L+++ME+ L D+ + Sbjct: 357 ARKSLERKT-----GARGLRSIMEKSLMDLMY 383 >gi|77360985|ref|YP_340560.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas haloplanktis TAC125] gi|76875896|emb|CAI87117.1| ATPase, chaperone subunit of serine protease [Pseudoalteromonas haloplanktis TAC125] Length = 427 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+ +++A+ N ++R + + +D EL NILL+GPTG GKT Sbjct: 70 PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312 +T ILFI GAF SR P DL Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVDVKESAASRSLSDTFKDVEPEDLVKY 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ + Q+ L E + L+F +D++ A+ Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALIQILSEPKNAITKQFSVLFGMEDVELEFRDDALAAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + + VVID ++ Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDNVSKVVIDETVIK 407 >gi|91977363|ref|YP_570022.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] gi|123762673|sp|Q135W8|CLPX_RHOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91683819|gb|ABE40121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodopseudomonas palustris BisB5] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|332532269|ref|ZP_08408150.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudoalteromonas haloplanktis ANT/505] gi|332038367|gb|EGI74812.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudoalteromonas haloplanktis ANT/505] Length = 427 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+ +++A+ N ++R + + +D EL NILL+GPTG GKT Sbjct: 70 PKEIRKHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDIELSKSNILLIGPTGSGKT 129 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312 +T ILFI GAF SR P DL Sbjct: 242 DTSKILFICGGAFSGLDKVIEQRSHKNTGIGFGVSVKESAASRSLSETFKDVEPEDLVKY 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ + Q+ L E + L+F +D++ A+ Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALAAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + + + VVID ++ Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSMDDVSKVVIDETVIK 407 >gi|282916934|ref|ZP_06324692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus D139] gi|282319421|gb|EFB49773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus D139] Length = 420 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++++ + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLESDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|57238934|ref|YP_180070.1| ATP-dependent protease ATP-binding subunit ClpX [Ehrlichia ruminantium str. Welgevonden] gi|58578867|ref|YP_197079.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium str. Welgevonden] gi|58616925|ref|YP_196124.1| ATP-dependent protease ATP-binding subunit [Ehrlichia ruminantium str. Gardel] gi|75356618|sp|Q5FFG6|CLPX_EHRRG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81353017|sp|Q5HBX4|CLPX_EHRRW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|57161013|emb|CAH57919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ehrlichia ruminantium str. Welgevonden] gi|58416537|emb|CAI27650.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia ruminantium str. Gardel] gi|58417493|emb|CAI26697.1| ATP-dependent clp protease ATP-binding subunit ClpX [Ehrlichia ruminantium str. Welgevonden] Length = 406 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62 T + P+EI LD Y+IGQ+ +K+ +++A+ N ++R + D E+ N+LL+GPT Sbjct: 56 TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGIISDVEISKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVESILLKLLQAANFNVEAAQR 172 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 173 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 NTD+ILFI GAF + P DL +P Sbjct: 233 NTDNILFIFGGAFDGLEKIIESRHQGSNMGFEANVQKASKDKDIFCYTEPEDLVKFGLIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+++ IL + +++L+ QYK+L + + I L+F + ++ +A A Sbjct: 293 EFVGRIPVITSLGELDEATLCRILVEPKNSLVKQYKKLFEMDNINLEFDDSALSEIARKA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 V GAR L+ ++E +L D+ F Sbjct: 353 -----AVRKAGARGLRAILENLLLDLMF 375 >gi|160878536|ref|YP_001557504.1| ATP-dependent protease ATP-binding subunit [Clostridium phytofermentans ISDg] gi|189082493|sp|A9KSX1|CLPX_CLOPH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160427202|gb|ABX40765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium phytofermentans ISDg] Length = 433 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ++AK+ +++++ N ++R DL EL NIL++GPTG GK Sbjct: 65 LKPKEIKEFLDQYVIGQEEAKKVLSVSVYNHYKRVLSEKDLDVELQKSNILMIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TYVAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 168 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 57/212 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EGS S ++ Sbjct: 176 QYGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGSVASVPPQGGRKHPHQEFI 235 Query: 290 SINTDHILFIASGAF-----------------------HVSR-----------PADLL-- 313 I+T +ILFI GAF H + P DL+ Sbjct: 236 QIDTTNILFICGGAFDGLEKIVEARIGQKSIGFNAEIAHGQKENIGDLFRQVLPQDLIKF 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ + QY++L + +G+ L F ED++ + Sbjct: 296 GMIPEFVGRVPVNTALDLLDEQALVRILTEPKNAITKQYRKLFELDGVELVFEEDALKEI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + + GAR L+ +ME V+ D F Sbjct: 356 AKRSFERKT-----GARGLRAIMESVMMDSMF 382 >gi|15924664|ref|NP_372198.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus Mu50] gi|15927253|ref|NP_374786.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus N315] gi|57650546|ref|YP_186559.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus COL] gi|87161950|ref|YP_494316.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195479|ref|YP_500283.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268155|ref|YP_001247098.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus JH9] gi|150394222|ref|YP_001316897.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus JH1] gi|151221780|ref|YP_001332602.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus str. Newman] gi|156979992|ref|YP_001442251.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus Mu3] gi|161509893|ref|YP_001575552.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142575|ref|ZP_03567068.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317182|ref|ZP_04840395.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732326|ref|ZP_04866491.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734541|ref|ZP_04868706.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH130] gi|255006459|ref|ZP_05145060.2| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794060|ref|ZP_05643039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9781] gi|258415764|ref|ZP_05682035.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus A9763] gi|258421999|ref|ZP_05684919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9719] gi|258438243|ref|ZP_05689527.1| protease ClpX [Staphylococcus aureus A9299] gi|258443701|ref|ZP_05692040.1| protease ClpX [Staphylococcus aureus A8115] gi|258444939|ref|ZP_05693259.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus A6300] gi|258447993|ref|ZP_05696125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A6224] gi|258454299|ref|ZP_05702268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A5937] gi|262048649|ref|ZP_06021532.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus D30] gi|269203293|ref|YP_003282562.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus ED98] gi|282893170|ref|ZP_06301404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A8117] gi|282920215|ref|ZP_06327940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9765] gi|282929348|ref|ZP_06336915.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A10102] gi|284024723|ref|ZP_06379121.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 132] gi|294848696|ref|ZP_06789442.1| ATP-dependent Clp protease [Staphylococcus aureus A9754] gi|295405985|ref|ZP_06815793.1| ATP-dependent Clp protease [Staphylococcus aureus A8819] gi|296274898|ref|ZP_06857405.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MR1] gi|297207612|ref|ZP_06924047.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245089|ref|ZP_06928966.1| ATP-dependent Clp protease [Staphylococcus aureus A8796] gi|304380734|ref|ZP_07363403.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54036856|sp|P63790|CLPX_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54040894|sp|P63789|CLPX_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71153012|sp|Q5HF98|CLPX_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122539337|sp|Q2FXQ7|CLPX_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123485475|sp|Q2FG62|CLPX_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215209|sp|A7X396|CLPX_STAA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|172048936|sp|A6QHK8|CLPX_STAAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044154|sp|A6U2E2|CLPX_STAA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044155|sp|A5ITJ9|CLPX_STAA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044156|sp|A8Z2J5|CLPX_STAAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|13701471|dbj|BAB42765.1| protease ClpX [Staphylococcus aureus subsp. aureus N315] gi|14247446|dbj|BAB57836.1| protease [Staphylococcus aureus subsp. aureus Mu50] gi|57284732|gb|AAW36826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus COL] gi|87127924|gb|ABD22438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203037|gb|ABD30847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741224|gb|ABQ49522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus JH9] gi|149946674|gb|ABR52610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus JH1] gi|150374580|dbj|BAF67840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus str. Newman] gi|156722127|dbj|BAF78544.1| protease [Staphylococcus aureus subsp. aureus Mu3] gi|160368702|gb|ABX29673.1| S14 family endopeptidase ClpX [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723926|gb|EES92655.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727482|gb|EES96211.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH130] gi|257788032|gb|EEV26372.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9781] gi|257839357|gb|EEV63830.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus A9763] gi|257842043|gb|EEV66472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9719] gi|257848287|gb|EEV72278.1| protease ClpX [Staphylococcus aureus A9299] gi|257851107|gb|EEV75050.1| protease ClpX [Staphylococcus aureus A8115] gi|257856147|gb|EEV79062.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus A6300] gi|257858754|gb|EEV81625.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A6224] gi|257863529|gb|EEV86288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A5937] gi|259163296|gb|EEW47855.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus D30] gi|262075583|gb|ACY11556.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus ED98] gi|269941155|emb|CBI49542.1| ATP-dependent Clp protease ATP-binding subunitClpX [Staphylococcus aureus subsp. aureus TW20] gi|282589080|gb|EFB94181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A10102] gi|282594563|gb|EFB99548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9765] gi|282764488|gb|EFC04614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A8117] gi|285817358|gb|ADC37845.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus 04-02981] gi|294824722|gb|EFG41145.1| ATP-dependent Clp protease [Staphylococcus aureus A9754] gi|294968982|gb|EFG45003.1| ATP-dependent Clp protease [Staphylococcus aureus A8819] gi|296887629|gb|EFH26527.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178169|gb|EFH37417.1| ATP-dependent Clp protease [Staphylococcus aureus A8796] gi|302751501|gb|ADL65678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340733|gb|EFM06664.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830053|emb|CBX34895.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315198631|gb|EFU28959.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140447|gb|EFW32301.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MRSA131] gi|320143985|gb|EFW35754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MRSA177] gi|329314348|gb|AEB88761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus T0131] gi|329727550|gb|EGG64006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 21172] gi|329728356|gb|EGG64793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 21189] Length = 420 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTI 397 >gi|315122829|ref|YP_004063318.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496231|gb|ADR52830.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ AK+ +A+A+ N ++R + EL NILLVGPTG GK Sbjct: 67 TPQDILQVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKNSSVELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------L 312 +T +ILFI GAF V + +D L Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKNSDDRPVGEVLRNIESEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E I L F ED++ +A Sbjct: 300 IPEFIGRLPVLATLEDLDEDSLIRILSEPKNALVKQYQCLFEMEDIELVFHEDALREIAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME++L D F Sbjct: 360 RAI-----IHKTGARGLRSIMEKILLDTMF 384 >gi|146299463|ref|YP_001194054.1| ATP-dependent protease ATP-binding subunit [Flavobacterium johnsoniae UW101] gi|146153881|gb|ABQ04735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacterium johnsoniae UW101] Length = 410 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFVEV 233 Query: 292 NTDHILFIASGAF------------------HVSRPAD--------------------LL 313 NT +ILFIA GAF S+ AD L+ Sbjct: 234 NTQNILFIAGGAFDGVERIISKRLNRQAVGYSTSKNADNIDKDNLLQYIIPKDIKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+K R ILT ++ L+ QY++L + + T++++D + D Sbjct: 294 PEIIGRLPVLTHMDPLDKETLRAILTQPKNALVKQYQKLFLMDEVEFTITDEALDFIVDK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D + +K + ID +Y Sbjct: 354 ALEYK-----LGARGLRSLCEAILTDAMYELPSSDDKILSIDKDY 393 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 5/114 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI + LD+Y+IGQ K+ +++A+ N ++R QQL ++ E+ NI++VG TG G Sbjct: 62 PKEIRAFLDQYVIGQDQTKKVMSVAVYNHYKRLMQQQLDDEV--EIEKSNIIMVGQTGTG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ +A++ P V+ T TE GYVG +VE I+ L+ A V ++ R Sbjct: 120 KTLVAKTIAKMLDVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYDVTKAER 173 >gi|239616657|ref|YP_002939979.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga olearia TBF 19.5.1] gi|239505488|gb|ACR78975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kosmotoga olearia TBF 19.5.1] Length = 403 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 57/218 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 YGI+++DE DKI + S I VS EGVQ+ LL +VEG+ +V + G Sbjct: 165 QYGIIYIDEIDKITRKTSNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFI 224 Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADLL-- 313 I+T +ILFI GAF P DL+ Sbjct: 225 KIDTTNILFIVGGAFDGLDEIIKERILTSTMGFGAEVKGKDSYRLGEILAQVGPDDLIHY 284 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFPV L L+ D + I+ + ++ +I QY++L++ EGI L FTED++ A+ Sbjct: 285 GMIPEFVGRFPVVATLDDLSVEDLKRIMLEPKNAVIKQYQKLLEIEGITLQFTEDALTAI 344 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A A+ + GAR +++V+E V+ DI F A ++ Sbjct: 345 AKEALKRGT-----GARAIKSVIESVMLDIMFEAPSME 377 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R + +D E+ NI+L+GPTG GKT Sbjct: 57 PAEIKAILDQYVIGQEKAKKTISVAVYNHYKRVFIGSD-DIEVEKSNIMLIGPTGSGKTL 115 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I+R LA++ PF + T TE GYVG +VE +I L+ A Sbjct: 116 IARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLQAA 157 >gi|163736127|ref|ZP_02143546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter gallaeciensis BS107] gi|161389997|gb|EDQ14347.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phaeobacter gallaeciensis BS107] Length = 422 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 65/238 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVRDDSDAGVGETFKDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFTE+++ ++A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV------IDAEYVRLH 422 A+ + GAR L++++E +L + F D EK VV DA+ + +H Sbjct: 359 KAIERKT-----GARGLRSILEDILLNTMFELPGMDSVEKVVVNEEAVNSDAQPLMIH 411 >gi|256752436|ref|ZP_05493295.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter ethanolicus CCSD1] gi|256748705|gb|EEU61750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter ethanolicus CCSD1] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D+A+ + GAR L+ ++E ++ D+ + +SD EK ++ + Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394 >gi|228475207|ref|ZP_04059933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus hominis SK119] gi|228270818|gb|EEK12220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus hominis SK119] Length = 420 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 65/242 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY +++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLALDNVELEFTEEALAAVSEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDFPSETD 431 + + GAR L++++E L DI + S SD+ + VV+ A+ + I E + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMYDVPSTSDVAK--VVVTAQTINEEI-----EPE 404 Query: 432 MY 433 MY Sbjct: 405 MY 406 >gi|167040914|ref|YP_001663899.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter sp. X514] gi|300914950|ref|ZP_07132266.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter sp. X561] gi|307723816|ref|YP_003903567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter sp. X513] gi|238687634|sp|B0K532|CLPX_THEPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166855154|gb|ABY93563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter sp. X514] gi|300889885|gb|EFK85031.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter sp. X561] gi|307580877|gb|ADN54276.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter sp. X513] Length = 424 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D+A+ + GAR L+ ++E ++ D+ + +SD EK ++ + Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394 >gi|56551845|ref|YP_162684.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis ZM4] gi|241761833|ref|ZP_04759919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752593|ref|YP_003225486.1| ATP-dependent protease ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|61211394|sp|Q5NNY7|CLPX_ZYMMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56543419|gb|AAV89573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis ZM4] gi|241373747|gb|EER63307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551956|gb|ACV74902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 422 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI + LD+Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPQEICTILDQYVIGQSKAKRVLSVAVHNHYKRLNHGGKDADVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T ++ LAR PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAETLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 178 GIVYIDEIDKITRKSDNPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF HV+ P + L Sbjct: 238 DTTNILFICGGAFAGLDRIIADRLEGKSIGFGAHVAAPDERRTGEILQECEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++S ILT+ ++ L+ QY++L + E L+FTED++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEDALAAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L++++E +L D F L+ + +I Sbjct: 358 KGIERKT-----GARGLRSILEGILLDTMFELPSLEGVSEII 394 >gi|282850556|ref|ZP_06259935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula ATCC 17745] gi|282580049|gb|EFB85453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula ATCC 17745] Length = 417 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 62 TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA++ PF + T TE GYVG +VE I+ ++ A +I R R Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 235 DTTNILFICGGAFDSMDKVITKRTAKKTLGFGADVQRKEERNISAILKDVVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L FTED+++ +AD Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L+ ++E+V++ + F + E T I Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391 >gi|258451811|ref|ZP_05699833.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A5948] gi|257860523|gb|EEV83349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A5948] Length = 420 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI++ DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYGDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|254429578|ref|ZP_05043285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax sp. DG881] gi|196195747|gb|EDX90706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alcanivorax sp. DG881] Length = 426 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P EI LD Y+IGQ+ AK+ +A+A+ N ++R + RDE L NILL+GPTG GK Sbjct: 68 PNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T ++LFI GAF V R P DL Sbjct: 241 DTSNMLFICGGAFAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLGELLVDVEPEDLVKYG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ + L QY L + EG+ LDF +D++ A+A Sbjct: 301 LIPEFIGRLPVIATLEELSEEALIQILTEPRNALTKQYARLFEMEGVELDFRDDALRAIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ V GAR L++++E VL D + + VVID+ ++ Sbjct: 361 NKAM-----VRKTGARGLRSILEGVLLDTMYQVPSMDSVAKVVIDSPTIK 405 >gi|21283347|ref|NP_646435.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MW2] gi|49486501|ref|YP_043722.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MSSA476] gi|300911694|ref|ZP_07129138.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH70] gi|23813855|sp|Q8NW72|CLPX_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56748666|sp|Q6G8Q1|CLPX_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21204787|dbj|BAB95483.1| protease ClpX [Staphylococcus aureus subsp. aureus MW2] gi|49244944|emb|CAG43405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MSSA476] gi|300887115|gb|EFK82316.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 420 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDNVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|13476995|ref|NP_108565.1| ATP-dependent protease ATP-binding subunit ClpX [Mesorhizobium loti MAFF303099] gi|21263478|sp|Q982V5|CLPX_RHILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|14027758|dbj|BAB54351.1| ATP-dependent Clp protease ATP binding subunit; ClpX [Mesorhizobium loti MAFF303099] Length = 424 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 67 TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V+ P D L Sbjct: 240 DTANILFICGGAFAGLDKIISDRGRKTSIGFGATVASPEDRRTGDIFRQVEPEDLLKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 300 IPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E V Sbjct: 360 RAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402 >gi|167038049|ref|YP_001665627.1| ATP-dependent protease ATP-binding subunit ClpX [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116458|ref|YP_004186617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326391009|ref|ZP_08212558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter ethanolicus JW 200] gi|238687678|sp|B0KBA3|CLPX_THEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166856883|gb|ABY95291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929549|gb|ADV80234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325992954|gb|EGD51397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter ethanolicus JW 200] Length = 424 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D+A+ + GAR L+ ++E ++ D+ + +SD EK ++ + Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394 >gi|315127188|ref|YP_004069191.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp. SM9913] gi|315015702|gb|ADT69040.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas sp. SM9913] Length = 427 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD Y+IGQ AK+ +++A+ N ++R + + +D EL NILL+GPTG GKT Sbjct: 70 PKEIRNHLDDYVIGQDHAKKVLSVAVYNHYKRLRNQSTKQDVELGKSNILLIGPTGSGKT 129 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312 +T ILFI GAF SR P DL Sbjct: 242 DTSKILFICGGAFAGLDKVIEQRSHKNTGIGFGVDVKESAASRSLSETFKDVEPEDLVKY 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ + Q+ L E + L+F +D++ A+ Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNAITKQFSVLFGMEDVELEFRDDALRAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + + VV+D ++ Sbjct: 362 AHKAMERKT-----GARGLRSIVEGVLLDTMYELPSIDNVSKVVVDETVIK 407 >gi|76581159|gb|ABA50634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia pseudomallei 1710b] Length = 466 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 111 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 169 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 170 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 223 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 224 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 283 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 284 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLREVEPEDLIKFGL 343 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY++L E + L+ D++ A+A Sbjct: 344 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAVAR 403 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + L+ + VI Sbjct: 404 KAIRRKT-----GARGLRSIIEQALLDVMYELPTLKGVSKVI 440 >gi|83311890|ref|YP_422154.1| ATP-dependent protease ATP-binding subunit ClpX [Magnetospirillum magneticum AMB-1] gi|123541533|sp|Q2W3I0|CLPX_MAGSA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|82946731|dbj|BAE51595.1| ATP-dependent protease Clp [Magnetospirillum magneticum AMB-1] Length = 421 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I LD Y+IGQ AK+ +++A+ N ++R Q + EL NILL+GPTG GK Sbjct: 65 TPKDICQVLDDYVIGQSHAKKVLSVAVHNHYKRLQHGGKNNEVELAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 177 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ IL+ ++ L+ QY+ L + E L F++D++ A+A+ Sbjct: 298 IPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLAFSDDALKAIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L VVI+ E V Sbjct: 358 KAIARKT-----GARGLRSIMETILLDTMFDLPGLDAVDEVVINKEVV 400 >gi|302333340|gb|ADL23533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus JKD6159] Length = 420 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|302335571|ref|YP_003800778.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli DSM 7084] gi|301319411|gb|ADK67898.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Olsenella uli DSM 7084] Length = 431 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPAD-LRDELMPKNILLVGP 61 +P EI EL +Y++GQ+DAKRA+++A+ N +RR AD R EL NILL+GP Sbjct: 72 TPHEIYDELSQYVMGQEDAKRAMSVAVYNHYRRIISGDDGTNADGERVELAKSNILLLGP 131 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 132 TGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLITAA 180 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 190 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIHI 249 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312 +T +ILFI GAF +++ P DL Sbjct: 250 DTKNILFICGGAFVGLDKIVADRIGKKGIGFNAELAKRVEENQDELMGQVMPQDLHKFGM 309 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV K L + D ILT ++ ++ QY+ + + EG+ LDF +D++ +A Sbjct: 310 IPEFIGRIPVITSTKELTEDDLVEILTKPKNAIVKQYRRMFEIEGVELDFDDDALREVAA 369 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ + E LE+ F SDL VV+ E V Sbjct: 370 QAIARGT-----GARGLRAICESTLEETMFDLPSDLDITRVVVTKESV 412 >gi|257791674|ref|YP_003182280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella lenta DSM 2243] gi|257475571|gb|ACV55891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella lenta DSM 2243] Length = 471 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P E+ +EL +++GQ+ AKRA+++A+ N ++R L AD D EL NI+L+GPTG Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAA 211 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 60/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL +VEG+ SV + G I Sbjct: 221 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHI 280 Query: 292 NTDHILFIASGAF---------------------------HVSR-------PADL----- 312 +T +ILFI GAF H P DL Sbjct: 281 DTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKKHAEAELLARVLPEDLNKYGM 340 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ D ILT+ ++ L+ QY ++ + E +L F +++ A+A Sbjct: 341 IPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKMFEFEDSVLTFEPEALKAIAH 400 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 AV + GAR L+++ ERVL+D+ + DL E+ Sbjct: 401 EAVEHGT-----GARGLRSICERVLQDVMY---DLPEQ 430 >gi|49483917|ref|YP_041141.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MRSA252] gi|257425790|ref|ZP_05602214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 55/2053] gi|257428456|ref|ZP_05604854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 65-1322] gi|257431090|ref|ZP_05607467.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257433773|ref|ZP_05610131.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus E1410] gi|257436689|ref|ZP_05612733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M876] gi|258424091|ref|ZP_05686973.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9635] gi|282904246|ref|ZP_06312134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C160] gi|282906071|ref|ZP_06313926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus Btn1260] gi|282908986|ref|ZP_06316804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911302|ref|ZP_06319104.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus WBG10049] gi|282914471|ref|ZP_06322257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M899] gi|282919440|ref|ZP_06327175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C427] gi|282924817|ref|ZP_06332483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C101] gi|283770739|ref|ZP_06343631.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus aureus subsp. aureus H19] gi|283958426|ref|ZP_06375877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus A017934/97] gi|293503549|ref|ZP_06667396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 58-424] gi|293510564|ref|ZP_06669269.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M809] gi|293537106|ref|ZP_06671786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M1015] gi|295428246|ref|ZP_06820875.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590791|ref|ZP_06949429.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus MN8] gi|56748680|sp|Q6GG31|CLPX_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49242046|emb|CAG40745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus MRSA252] gi|257271484|gb|EEV03630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 55/2053] gi|257275297|gb|EEV06784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 65-1322] gi|257278038|gb|EEV08686.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257281866|gb|EEV12003.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus E1410] gi|257284040|gb|EEV14163.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M876] gi|257845712|gb|EEV69744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus A9635] gi|282313183|gb|EFB43579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C101] gi|282317250|gb|EFB47624.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C427] gi|282321652|gb|EFB51977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M899] gi|282324997|gb|EFB55307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus WBG10049] gi|282327250|gb|EFB57545.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331363|gb|EFB60877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus Btn1260] gi|282595864|gb|EFC00828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus C160] gi|283460886|gb|EFC07976.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus aureus subsp. aureus H19] gi|283470942|emb|CAQ50153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus ST398] gi|283790575|gb|EFC29392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus A017934/97] gi|290919951|gb|EFD97019.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M1015] gi|291095215|gb|EFE25480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus 58-424] gi|291466455|gb|EFF08976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus aureus subsp. aureus M809] gi|295127646|gb|EFG57283.1| ATP-dependent Clp protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575677|gb|EFH94393.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus MN8] gi|298694945|gb|ADI98167.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus ED133] gi|312437867|gb|ADQ76938.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315195577|gb|EFU25964.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS00] gi|323440781|gb|EGA98490.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus O11] gi|323442936|gb|EGB00559.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus O46] Length = 420 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|312796429|ref|YP_004029351.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Burkholderia rhizoxinica HKI 454] gi|312168204|emb|CBW75207.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Burkholderia rhizoxinica HKI 454] Length = 410 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 68 SPLEIRQILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGASVKSKQDRDAGEVLRDVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPTALQAVAK 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++E+ L D+ + L+ Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYELPTLK 391 >gi|91787907|ref|YP_548859.1| ATP-dependent protease ATP-binding subunit ClpX [Polaromonas sp. JS666] gi|123165007|sp|Q12BY1|CLPX_POLSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91697132|gb|ABE43961.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polaromonas sp. JS666] Length = 421 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + + EL NILL+GPTG Sbjct: 67 TPAEIKATLDGYVIGQEPAKRTLAVAVYNHYKRLRHKEKAKKDDVELTKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 GKTLLAQTLARTLNVPFVMADATTLTEAGYVGEDVENIIQKLL 169 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFSGLEKVIENRTEASGIGFGALVKSKKTRSLTESFKEVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ ++ Q+ +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVATLAELTEDALVQILTEPKNAVVKQFSKLLSMEGVDLEIRPSALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386 >gi|300023468|ref|YP_003756079.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Hyphomicrobium denitrificans ATCC 51888] gi|299525289|gb|ADJ23758.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomicrobium denitrificans ATCC 51888] Length = 415 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 60 TPQEICNVLDSYVIGQFHAKRVLSVAVHNHYKRLNHATKNNDVELAKSNILLVGPTGSGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 120 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 172 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 173 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 232 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF +SR P DLL Sbjct: 233 DTTNILFICGGAFAGLEKIISRRGKGSSIGFSARVTGPDERRTGDILRGVEPEDLLKFGL 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT+ ++ ++ QY+ L + E + L T D++ A++ Sbjct: 293 IPEFIGRLPVIATLEDLDEAALVQILTEPKNAIVKQYQRLFEMEDVKLTITLDALRAISR 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D + L+ + VVI E V Sbjct: 353 KAIERKT-----GARGLRSIMEGILLDTMYDLPTLKGVEEVVIGPEVV 395 >gi|307265820|ref|ZP_07547371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter wiegelii Rt8.B1] gi|306919215|gb|EFN49438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacter wiegelii Rt8.B1] Length = 424 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ+ AK+A+A+A+ N ++R + P D+ EL NILL+GPTG G Sbjct: 63 PKEIKEFLDQYVIGQEKAKKALAVAVYNHYKRINSRIKPDDV--ELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 61/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGIEKIIESRIGKKSLGFGAEVQSRKEKDLSEILSHI-MPQDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L+K D ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 294 MIPEFIGRVPIVVTLDPLSKDDLVRILTEPKNALTKQYEKLFELDGVKLEFDKKALGLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 D+A+ + GAR L+ ++E ++ D+ + +SD EK ++ + Sbjct: 354 DMALERKT-----GARGLRAILEEIMLDVMYEIPSSDNIEKCIITE 394 >gi|300173595|ref|YP_003772761.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leuconostoc gasicomitatum LMG 18811] gi|299887974|emb|CBL91942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leuconostoc gasicomitatum LMG 18811] Length = 418 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EIV+EL+ Y+IGQ DAK+ +A+A+ N ++R + EL NI L+GPTG G Sbjct: 67 TPHEIVAELNDYVIGQDDAKKTLAVAVYNHYKRINENYTPTTDVELQKSNIALIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTYLAQSLARILDVPFAIADATTLTEAGYVGEDVENIVLKLLQSA 171 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 67/242 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 179 QHGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKMLEGTIASVPPQGGRKHPQQELI 238 Query: 290 SINTDHILFIASGAF------------------------------------HVSRPAD-- 311 ++T +ILFI GAF HV +P D Sbjct: 239 QVDTTNILFIVGGAFAGIDTIIKERLGERVIGFGSDANDNAIALESENILEHV-QPEDMT 297 Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 L+PE GR P+ L L D ILT+ ++ LI QY L+ + ++L+F D+++ Sbjct: 298 KFGLIPEFIGRLPIVTVLDELKIDDLTRILTEPKNALIKQYTALLGLDDVVLEFQPDALE 357 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRL 421 A+A++A+ ++ GAR L++++E ++D+ + S D+ + K VID E L Sbjct: 358 AMAELAIKRHT-----GARGLRSIIELTMKDVMYDIPSRDDVSKVIITKASVIDGEQPEL 412 Query: 422 HI 423 + Sbjct: 413 QL 414 >gi|254247969|ref|ZP_04941290.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184] gi|124872745|gb|EAY64461.1| ClpX, ATPase regulatory subunit [Burkholderia cenocepacia PC184] Length = 390 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D +D EL NILL+GPTG G Sbjct: 35 SPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK-HLDKKDDVELSKSNILLIGPTGSG 93 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 94 KTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 135 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 148 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 207 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 208 DTTNILFICGGAFDGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGL 267 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 268 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFAMERVELEIRPGALQAVAR 327 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E+ L D+ + ++ + VI E V Sbjct: 328 KAIRRKT-----GARGLRSIIEQALLDVMYELPTMKGVSKVIIDENV 369 >gi|330972588|gb|EGH72654.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. aceris str. M302273PT] Length = 427 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAKTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|317487861|ref|ZP_07946453.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA] gi|325830652|ref|ZP_08164073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella sp. HGA1] gi|316912987|gb|EFV34504.1| ATP-dependent Clp protease [Eggerthella sp. 1_3_56FAA] gi|325487398|gb|EGC89840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eggerthella sp. HGA1] Length = 471 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P E+ +EL +++GQ+ AKRA+++A+ N ++R L AD D EL NI+L+GPTG Sbjct: 106 TPHELYAELSEHVVGQEQAKRALSVAVYNHYKRISLGADAVDGDVELAKSNIMLLGPTGS 165 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 166 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLMTAA 211 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 60/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL +VEG+ SV + G I Sbjct: 221 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHI 280 Query: 292 NTDHILFIASGAF---------------------------HVSR-------PADL----- 312 +T +ILFI GAF H P DL Sbjct: 281 DTTNILFILGGAFVGLADIIADRVGKKGLGFNAELPESKKHAEAELLARVLPEDLNKYGM 340 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ D ILT+ ++ L+ QY ++ + E +L F +++ +A Sbjct: 341 IPEFVGRIPVVTSLNELSEEDLVRILTEPKNALVKQYTKMFEFEDSVLTFEPEALKVIAH 400 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 AV + GAR L+++ ERVL+D+ + DL E+ Sbjct: 401 EAVEHGT-----GARGLRSICERVLQDVMY---DLPEQ 430 >gi|260460896|ref|ZP_05809146.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium opportunistum WSM2075] gi|319784103|ref|YP_004143579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259033473|gb|EEW34734.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium opportunistum WSM2075] gi|317169991|gb|ADV13529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 424 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 67 TPQEILKVLDDYVIGQPYAKRVLSVAVHNHYKRLAHAGKNNDVELAKSNILLIGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V+ P D L Sbjct: 240 DTANILFICGGAFAGLDKIISDRGRKTSIGFGAVVASPEDRRTGDVFRLVEPEDLLKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 300 IPEFVGRLPVLATLEDLDEPALIQILTEPKNALVKQYQRLFEMENVDLTFHENALSAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E V Sbjct: 360 RAIERKT-----GARGLRSIMEAILLDTMFELPALEGVREVVISEEVV 402 >gi|256828015|ref|YP_003156743.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfomicrobium baculatum DSM 4028] gi|256577191|gb|ACU88327.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfomicrobium baculatum DSM 4028] Length = 416 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI + LD Y++GQ DAK+ +++A+ N ++R + A ++D EL NILL+GPTG GK Sbjct: 64 PQEIKAALDDYVVGQDDAKKILSVAVYNHYKRIKYHALVKDDVELDKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ LV A Sbjct: 124 TLLAQTLARILKVPFAIADATTLTEAGYVGEDVENILVQLVQNA 167 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 66/238 (27%) Query: 238 IQMVENY---------GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284 +Q+V+N GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ Sbjct: 161 VQLVQNADYNLETAAKGIIYVDEIDKISRKSDSPSITRDVSGEGVQQALLKIIEGTVANI 220 Query: 285 STKYGS---------INTDHILFIASGAF------------------------------- 304 K G ++T +ILFI GAF Sbjct: 221 PPKGGRKHPQQEFIRLDTSNILFIVGGAFIGLDEMVKQRVQGSSMGFGATMRRKQDDNTD 280 Query: 305 ---HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 P DL+ PE GR V L LN+ D IL + ++ LI QY+++ + E Sbjct: 281 SLLKQVHPMDLIRFGLIPEFTGRISVITSLTELNEDDLMRILQEPKNALIKQYQKMFELE 340 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + L FT++++ ALA A+ L + GAR L++VME ++ DI ++ ++ T + Sbjct: 341 NVELKFTQNALKALAARAIKLET-----GARGLRSVMESIMLDIMYTLPSTKDVTECV 393 >gi|269798317|ref|YP_003312217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Veillonella parvula DSM 2008] gi|294792181|ref|ZP_06757329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 6_1_27] gi|294794046|ref|ZP_06759183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 3_1_44] gi|269094946|gb|ACZ24937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella parvula DSM 2008] gi|294455616|gb|EFG23988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 3_1_44] gi|294457411|gb|EFG25773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. 6_1_27] Length = 417 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 62 TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA++ PF + T TE GYVG +VE I+ ++ A +I R R Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 235 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L FTED+++ +AD Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L+ ++E+V++ + F + E T I Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391 >gi|116747550|ref|YP_844237.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophobacter fumaroxidans MPOB] gi|116696614|gb|ABK15802.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophobacter fumaroxidans MPOB] Length = 417 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ AK+ +++A+ N ++R +L D D EL NIL++GPTG GKT Sbjct: 65 PAEIKAILDQYVIGQDRAKKILSVAVHNHYKRIELKIDKNDVELQKSNILMIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LLAQTLARILNVPFTIADATTLTEAGYVGEDVENILVSLIQAA 167 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 60/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G I Sbjct: 177 GIVYIDEIDKIAKKSDSPSITRDVSGEGVQQALLKILEGTVANVPPKGGRKHPQQEFIKI 236 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T +ILFI GAF+ +P DLL Sbjct: 237 DTTNILFICGGAFNYLETIIQSRVGVKGMGFGAEIRSKEDKSVGEILIKVQPEDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + + ILT+ ++ L+ QYK+L + E + L FTE + A+A Sbjct: 297 IPEFVGRLPVIATLNELTEDELVSILTEPKNALVKQYKKLFELEDVRLRFTEGVLRAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A+ S GAR L+++ME ++ DI + S ++QE Sbjct: 357 EAIRRKS-----GARGLRSIMENIMLDIMYDLPSHPEIQE 391 >gi|15888589|ref|NP_354270.1| ATP-dependent protease ATP-binding subunit [Agrobacterium tumefaciens str. C58] gi|23813866|sp|Q8UFY5|CLPX_AGRT5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15156307|gb|AAK87055.1| ATP-dependent Clp protease, ATP-binding subunit [Agrobacterium tumefaciens str. C58] Length = 425 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + D EL NI+LVGPTG GK Sbjct: 68 TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+++ME++L D F L+ Sbjct: 361 RAITRKT-----GARGLRSIMEKILLDTMFELPTLE 391 >gi|148259929|ref|YP_001234056.1| ATP-dependent protease ATP-binding subunit [Acidiphilium cryptum JF-5] gi|326403117|ref|YP_004283198.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium multivorum AIU301] gi|254763827|sp|A5FX05|CLPX_ACICJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146401610|gb|ABQ30137.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidiphilium cryptum JF-5] gi|325049978|dbj|BAJ80316.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidiphilium multivorum AIU301] Length = 418 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AKR +++A+ N ++R D E+ NI+LVGPTG GK Sbjct: 64 TPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 103/226 (45%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 237 DTTNILFICGGAFAGLEKIIAQRGKGSGIGFGADVRDPTEQRTGAILREVEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT ++ L+ QY L + EG+ L+FTED++ +A Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417 A+ + GAR L+++ME +L + F L + VVI+ E Sbjct: 357 RAIQRKT-----GARGLRSIMENILLETMFDLPGLDSVEEVVINGE 397 >gi|325292626|ref|YP_004278490.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium sp. H13-3] gi|325060479|gb|ADY64170.1| ATP-dependent clp protease ATP-binding subunit ClpX [Agrobacterium sp. H13-3] Length = 425 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + D EL NI+LVGPTG GK Sbjct: 68 TPQDIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+++ME++L D F L+ Sbjct: 361 RAITRKT-----GARGLRSIMEKILLDTMFELPTLE 391 >gi|34557753|ref|NP_907568.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella succinogenes DSM 1740] gi|46576388|sp|Q7M8U5|CLPX2_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2 gi|34483470|emb|CAE10468.1| PROTEASE CLPX [Wolinella succinogenes] Length = 397 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 64/102 (62%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI LD+Y+I Q+ AK A+++AL N ++R P EL NILL+GP+G GKT Sbjct: 59 PQEIAQFLDQYVISQEKAKMALSVALYNHYKRISYPKHHHIELEKSNILLLGPSGSGKTL 118 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 119 LAKTLARVLNIPFAMSDATALTEAGYVGEDVESILSRLLHAA 160 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 50/212 (23%) Query: 245 GIVFLDEFDKIVAR----DSGNGIGVSREGVQRDLLPLVEGSSV-----------STKYG 289 GIV++DE DKI + SG IG EGVQ+ LL ++EG+SV +T+ Sbjct: 170 GIVYIDEIDKIAKKGESVQSGRDIG--GEGVQQGLLKILEGASVYVPLKGARKNSNTETV 227 Query: 290 SINTDHILFIASGAF-----------------HVSRPAD-----------LLPEIQGRFP 321 +T +LFI GAF + S P ++PE GR P Sbjct: 228 LFDTKDVLFICGGAFVGIKEERGEKRSGFLASNPSSPTQRTLRKQLLSYGMIPEFIGRIP 287 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 + + L+ LN IL + + ++I QY+ L +G+ L+FT++++ A+A +++ Sbjct: 288 LILELEPLNLESLVKILKEPKDSIIAQYQYLFSLDGVKLEFTDEALLAIAQKSLD----- 342 Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 ++GAR L+ ++E +L + F +E T V Sbjct: 343 EELGARGLRHILEEILMPLLFEIPSKEEVTQV 374 >gi|18310374|ref|NP_562308.1| ATP-dependent protease ATP-binding subunit [Clostridium perfringens str. 13] gi|110800496|ref|YP_696087.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium perfringens ATCC 13124] gi|168207807|ref|ZP_02633812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens E str. JGS1987] gi|168212103|ref|ZP_02637728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens B str. ATCC 3626] gi|168215326|ref|ZP_02640951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens CPE str. F4969] gi|168217823|ref|ZP_02643448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens NCTC 8239] gi|169342285|ref|ZP_02863363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens C str. JGS1495] gi|21263462|sp|Q8XKK2|CLPX_CLOPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123148746|sp|Q0TQK3|CLPX_CLOP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|18145054|dbj|BAB81098.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium perfringens str. 13] gi|110675143|gb|ABG84130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens ATCC 13124] gi|169299612|gb|EDS81671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens C str. JGS1495] gi|170660869|gb|EDT13552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens E str. JGS1987] gi|170709985|gb|EDT22167.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens B str. ATCC 3626] gi|170713288|gb|EDT25470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens CPE str. F4969] gi|182380170|gb|EDT77649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens NCTC 8239] Length = 435 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 NT +ILFI GAF +V P DLL Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L++L+ ILT ++ L+ QYK+L + + + LDFTE+++ A+AD Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N + GAR L+ ++E + DI F Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y++GQ AK+++A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 66 PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168 >gi|256827323|ref|YP_003151282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cryptobacterium curtum DSM 15641] gi|256583466|gb|ACU94600.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cryptobacterium curtum DSM 15641] Length = 454 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P E+ L +++GQ++AKRA+++A+ N ++R L AD D EL NILL+GPTG Sbjct: 97 TPHELYDRLSAFVVGQEEAKRALSVAVYNHYKRISLGADASDDDVELAKSNILLLGPTGS 156 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 157 GKTLLAQTLARTLRVPFAIADATTLTEAGYVGEDVENILLKLITAA 202 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 99/222 (44%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG +SV + G I Sbjct: 212 GIVYIDEIDKIARKAENLSITRDVSGEGVQQSLLKIVEGCEASVPPQGGRKHPQQELIHI 271 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF V + P DL Sbjct: 272 DTTNILFILGGAFVGLTDIIAERVGKSGLGFNARLPQSKKHEDAELLRQVLPEDLNKFGM 331 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV LK L + D ILT+ + L+ QY + + E L D++ A+A Sbjct: 332 IPEFVGRIPVITRLKELTEEDLVRILTEPRNALVKQYTRMFEFEESELVVEPDALRAIAH 391 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ N+ GAR L+++ E VL D+ + D E T V+ Sbjct: 392 KAIEHNT-----GARGLRSICENVLMDVMYELPDHTEPTRVV 428 >gi|153854552|ref|ZP_01995822.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814] gi|149752861|gb|EDM62792.1| hypothetical protein DORLON_01817 [Dorea longicatena DSM 13814] Length = 419 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+ +++A+ N ++R +L EL NIL++GPTG GK Sbjct: 66 LKPEEIKAFLDEYVIGQDEAKKVLSVAVYNHYKRVMSGKELGVELGKSNILMLGPTGCGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ G PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKIIQAA 169 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 178 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEMIQ 237 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF V R P DL Sbjct: 238 IDTTNILFICGGAFEGIEKIVEKRIDQKSIGFNAEIAEKHEDDVDRLLQQILPQDLVKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L+K ILT+ ++ L QY+++++ +G+ L F + +++ +A Sbjct: 298 LIPELVGRVPVTVALEMLDKDALVKILTEPKNALTKQYQKMLELDGVKLTFDKKALETIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + ++ + GAR L+ +ME ++ DI + A SD KT I + V+ Sbjct: 358 ETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKTCRITEDVVK 402 >gi|182627118|ref|ZP_02954836.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721] gi|177907507|gb|EDT70165.1| HesB-like domain protein [Clostridium perfringens D str. JGS1721] Length = 435 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 NT +ILFI GAF +V P DLL Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L++L+ ILT ++ L+ QYK+L + + + LDFTE+++ A+AD Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N + GAR L+ ++E + DI F Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y++GQ AK+++A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 66 PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168 >gi|82751263|ref|YP_417004.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus aureus RF122] gi|123547892|sp|Q2YTB5|CLPX_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|82656794|emb|CAI81223.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus aureus RF122] Length = 420 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEDVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEETLIDIMFDVPSNENVTKVVITAQTIN 398 >gi|331003244|ref|ZP_08326751.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str. F0167] gi|330412897|gb|EGG92277.1| ATP-dependent Clp protease [Lachnospiraceae oral taxon 107 str. F0167] Length = 465 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 57/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GIVF+DE DKI + + N VS E VQ++LL ++EGS V G+ +NT Sbjct: 232 GIVFIDEIDKIAKKKNTNTRDVSGESVQQELLKMLEGSKVEVPVGTNQKNVLAPMETVNT 291 Query: 294 DHILFIASGAFHVS---------------------------------------RPADLLP 314 D+ILFI GAF R ++P Sbjct: 292 DNILFICGGAFPALDDIIKERLQKNTSMGFNSDLKGKYDNDSDLYSKVINEDIRKFGMIP 351 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+K F+ IL + ++ ++ QYK L++ + + L F +D+++ +A+ A Sbjct: 352 EFIGRLPVVCTLSKLDKEAFKKILIEPKNAILKQYKRLLELDEVELSFDDDAMEWIAEQA 411 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLHIG 424 + D GAR L++++E + DI + + D V+I EY+ H G Sbjct: 412 MK-----KDTGARALRSIIEEFMLDIMYETPKDKNIGKVIITREYLE-HKG 456 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 10/144 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66 +P +I LD Y+IGQ AKR +++A+ N ++R L D + K NIL++GPTG GK Sbjct: 119 APHKIKEMLDEYVIGQDQAKRIISVAVYNHYKRIFLDKDKEGIRIEKSNILMIGPTGSGK 178 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T + + LA+L P + T TE GY+G ++E +I L+ A N V R + Sbjct: 179 TYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVE-------RAEC 231 Query: 127 SINAEERILDALVGKTATSNTREV 150 I + I + K +NTR+V Sbjct: 232 GIVFIDEI--DKIAKKKNTNTRDV 253 >gi|34498012|ref|NP_902227.1| ATP-dependent protease ATP-binding subunit ClpX [Chromobacterium violaceum ATCC 12472] gi|46576429|sp|Q7NUZ0|CLPX_CHRVO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|34103867|gb|AAQ60227.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chromobacterium violaceum ATCC 12472] Length = 426 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI ++LD+YIIGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 70 TPQEIRADLDQYIIGQDFAKKTLSVAVYNHYKRLYNKGGKDDVELAKSNILLIGPTGSGK 129 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 130 TLLAQSLARLLDVPFVIADATTLTEAGYVGEDVEHIIQKLL 170 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 58/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFIQV 242 Query: 292 NTDHILFIASGAF--------------------HVS---------------RPAD----- 311 +T +ILFI GAF VS P D Sbjct: 243 DTTNILFICGGAFDGLDKIIRQRSEKGGIGFGAEVSSKDDGKSLTKLFQEVEPQDIIRFG 302 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR PV L+ L++ ILT ++ LI QY++L E + L+ ++ +A Sbjct: 303 LIPELIGRLPVVATLEELDEEALVSILTQPKNALIKQYQKLFSLETVELEVRPSALRVIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++ER L D + +Q Sbjct: 363 KQALARKT-----GARGLRSILERALLDTMYELPSMQ 394 >gi|288574916|ref|ZP_06393273.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570657|gb|EFC92214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiosulfovibrio peptidovorans DSM 11002] Length = 431 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGVGK 66 PREI S LDRY+IGQ+ AKRAV++++ N +RR Q + + ++ N+LL GPTG GK Sbjct: 78 PREIKSYLDRYVIGQEKAKRAVSVSVYNHYRRIQNNIANESEVDIQKSNLLLAGPTGSGK 137 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 138 TLIAQTLAKKLNVPFAMADATVLTEAGYVGEDVENILVRLLQAA 181 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G SI Sbjct: 191 GIIYIDEMDKITRKSESTSITRDVSGEGVQQALLKILEGTLANIPPKGGRKHPYQEFISI 250 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI +GAF V+R P DL+ Sbjct: 251 DTTNILFICAGAFDGLEDIVARRMNRKMIGFGGEVHSKVSAKRFELLSHAEPDDLMSFGF 310 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PEI GR PV V +++L+ ILT+ + L+ QY++L++ E I L+FTE ++ A+A+ Sbjct: 311 IPEIIGRIPVLVPMETLDVDALVKILTEPRNALVRQYEKLLELENIDLEFTEGALKAVAE 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ N+ GAR L+T+ME + D+ + ++ V I Sbjct: 371 KAMIKNT-----GARGLRTIMEGRMLDLMYDIPSREDDVVKI 407 >gi|167949880|ref|ZP_02536954.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589388|gb|ABG77203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 329 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI LD+Y+IGQQ AK+ +++A+ N ++R + L + EL NILL+GPTG GKT Sbjct: 68 PHEINKTLDQYVIGQQRAKKVLSVAVYNHYKRLESLGKESDIELAKSNILLIGPTGSGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 LLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 167 >gi|110803718|ref|YP_698703.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium perfringens SM101] gi|123341787|sp|Q0ST54|CLPX_CLOPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110684219|gb|ABG87589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium perfringens SM101] Length = 435 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 NT +ILFI GAF +V P DLL Sbjct: 238 NTSNILFICGGAFDGIDKIIEKRGTKSSIGFGAEVKGKSEKNVGELLKDIMPGDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L++L+ ILT ++ L+ QYK+L + + + LDFTE+++ A+AD Sbjct: 298 IPEFVGRLPVLVTLEALDNEALVSILTKPKNALVKQYKKLFELDNVKLDFTEEALKAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N + GAR L+ ++E + DI F Sbjct: 358 EAINRKT-----GARGLRAIVEETMMDIMF 382 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y++GQ AK+++A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 66 PQEIKDYLDQYVVGQDRAKKSLAVAVYNHYKRINANKAEDDVELQKSNILLLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 LLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168 >gi|297250255|ref|ZP_06863929.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria polysaccharea ATCC 43768] gi|296839417|gb|EFH23355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neisseria polysaccharea ATCC 43768] Length = 394 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 69/101 (68%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EIV+ L+ ++IGQ+ AK+A+A+++ N ++R + P + EL NILL+GPTG GK Sbjct: 46 TPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKVGGNVELSKSNILLIGPTGSGK 105 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VEQII L+ Sbjct: 106 TLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLL 146 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G ++ Sbjct: 159 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINV 218 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 219 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENADITKLFGIVEPEDLIKFG 278 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L+ L++ ILT+ ++ L+ QY+ L E + L+F E+++ ++A Sbjct: 279 LIPELIGRLPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEENALRSIA 338 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVI 414 A+ + GAR L++++ER L D + DL+ K VV+ Sbjct: 339 RQAMERKT-----GARGLRSIVERCLLDTMYRLPDLKGLKKVVV 377 >gi|332296031|ref|YP_004437954.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermodesulfobium narugense DSM 14796] gi|332179134|gb|AEE14823.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermodesulfobium narugense DSM 14796] Length = 413 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 69/106 (65%), Gaps = 1/106 (0%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGV 64 N P+EI ++L Y+IGQ++ K+ +++A+ N ++R Q +D E++ N+LL+GPTG Sbjct: 61 NLKPKEIFAKLSEYVIGQENVKKVLSVAVYNHYKRIMQDKSDNDVEILKSNVLLIGPTGT 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE ++ L+ A Sbjct: 121 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENVLLRLIQAA 166 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 63/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 176 GIVYIDEIDKIGRKSENTSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 235 Query: 292 NTDHILFIASGAFH-----------------VSR----------------------PADL 312 NT++ILFI G+F +S+ P DL Sbjct: 236 NTENILFICGGSFEKIEEKVYSRIGKKNIGFISKSKIDREIKEEEEKWKILQENILPEDL 295 Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 + PE+ GR P+ L L++ + ILT+ ++ ++ QYK+L++ + I L+FTE+S+ Sbjct: 296 IHFGLIPELVGRLPIIAVLSPLDEVLLKKILTEPKNAILKQYKKLLEMDNITLNFTEESL 355 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419 D + A+ N+ GAR L+ +ME ++ D+ F +A Q T+ ID ++V Sbjct: 356 DYIVKEAIKRNT-----GARGLRAIMETIMLDVMFDTALFAQNGTLEIDGKFV 403 >gi|163743917|ref|ZP_02151287.1| ATP-dependent protease ATP-binding subunit [Phaeobacter gallaeciensis 2.10] gi|161382762|gb|EDQ07161.1| ATP-dependent protease ATP-binding subunit [Phaeobacter gallaeciensis 2.10] Length = 408 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVRDDSDAGVGETFKDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFTE+++ ++A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTEEALSSIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A+ + GAR L++++E +L D F D EK VV Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMDSVEKVVV 396 >gi|288905456|ref|YP_003430678.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus gallolyticus UCN34] gi|325978446|ref|YP_004288162.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732182|emb|CBI13747.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus gallolyticus UCN34] gi|325178374|emb|CBZ48418.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 409 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ LD Y++GQ AKRA+A+A+ N ++R A+ R+E L NIL++GPTG Sbjct: 64 PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+A+ A Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F +E T V Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKV 391 >gi|315637948|ref|ZP_07893134.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter upsaliensis JV21] gi|315481983|gb|EFU72601.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter upsaliensis JV21] Length = 409 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 N +P+ + + LDRY+IGQ AK+ ++ + N ++R ADL D EL NILLVGPT Sbjct: 62 NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRL-FRADLEDDDTELFKSNILLVGPT 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LAR P + T TE GYVG +VE I+ L+ A N V +++ Sbjct: 121 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDVERAQK 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 53/223 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 178 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 237 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 238 DTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDDSGEKDKDLLEKIEPDDLVHFGLIPEL 297 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR + L L++ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 298 IGRLHIIASLNELDEDDMVRILTEPKNAIIKQYQKLFAIDGVNLKFDEDALRAIAKLALE 357 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L++++E ++ D+ F + ++ +VI E V Sbjct: 358 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVV 395 >gi|254785726|ref|YP_003073155.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter turnerae T7901] gi|259491270|sp|C5BTX7|CLPX_TERTT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|237687270|gb|ACR14534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Teredinibacter turnerae T7901] Length = 429 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P +I + LD Y+IGQQDAK+ +A+A+ N ++R ++ + EL NILLVGPTG Sbjct: 69 PIDISATLDEYVIGQQDAKKVLAVAVYNHYKRLRVGDKKKGKDEVELGKSNILLVGPTGS 128 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 GKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 171 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAF-----------------------------HVSR------PADL---- 312 +T +ILFI GAF +V P DL Sbjct: 244 DTSNILFICGGAFAGLDKIIRDRSEKGGIGFSAEVKSKDGSKNVGETLKDLEPEDLVRYG 303 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+K IL + +++L+ QY +L + E + +DF D+++A+A Sbjct: 304 LIPEFVGRLPVIATLDELDKEALVTILREPKNSLVKQYAKLFEMENVEVDFRADALEAVA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ V GAR L+++ME VL D + Sbjct: 364 EKAM-----VRKTGARGLRSIMENVLLDTMY 389 >gi|225175199|ref|ZP_03729195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter alkaliphilus AHT 1] gi|225169375|gb|EEG78173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dethiobacter alkaliphilus AHT 1] Length = 420 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 5/106 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 P EI LD+YIIGQ +AK+++A+A+ N ++R +Q P D+ E+ NI L+GPTGV Sbjct: 63 KPTEIKDILDQYIIGQDEAKKSLAVAVYNHYKRINTEQKPDDV--EIQKSNIALIGPTGV 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFMQI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DL+ Sbjct: 236 DTTNILFICGGAFDGIEKLIQDRIGKKGIGFGAEVAAKQDGNIGEILRHV-LPQDLIKYG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L +L++ ILT+ + L QY++L + + + L+F + +++ +A Sbjct: 295 LIPEFVGRVPVVATLDALDEEALVRILTEPRNALTKQYQKLFELDCVNLEFKDGTLEIIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ N+ GAR L+ ++E +L D+ + Sbjct: 355 EEAIRRNT-----GARGLRAILEGILLDVMY 380 >gi|91775763|ref|YP_545519.1| ATP-dependent protease ATP-binding subunit [Methylobacillus flagellatus KT] gi|122985527|sp|Q1H1F9|CLPX_METFK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91709750|gb|ABE49678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacillus flagellatus KT] Length = 421 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI + LD+Y+IGQ AK+ +A+A+ N ++R + D E+ NIL++GPTG GK Sbjct: 65 TPKEICAILDQYVIGQTQAKKNLAVAVYNHYKRLEQGGQKDDVEIAKSNILVIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LARL PF+ + T TE GYVG +VE I++ L+ V +++R Sbjct: 125 TLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAQR 177 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 62/237 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 237 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 238 DTTNILFICGGAFDGLEKIIRRRSEKGGIGFGAEVKSKEDARAIGEVLRDVEPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P L+SL++ IL + ++ L QY +L K EG+ L+F E ++ +A Sbjct: 298 LIPEFVGRLPAIATLESLDEDALVTILVEPKNALTKQYIKLFKMEGVDLEFREAALRMIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L+++ME L +I + + + VV+D ++ GD P Sbjct: 358 KKALERKT-----GARGLRSIMEHALLEIMYDLPSIPNLRKVVVDEGVIK---GDSP 406 >gi|242775288|ref|XP_002478613.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC 10500] gi|218722232|gb|EED21650.1| ATP-dependent Clp protease, putative [Talaromyces stipitatus ATCC 10500] Length = 621 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 116/485 (23%), Positives = 195/485 (40%), Gaps = 102/485 (21%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRW---------------------RRQQLPA 45 +PR + LD+Y++GQ AK+ +++A+ N + RR+ + A Sbjct: 90 LTPRMLKQYLDQYVVGQDRAKKILSVAVYNHYQRIMELQRQEEAAAEAMAQKERREAMEA 149 Query: 46 DLRD--------------------------------ELMPKNILLVGPTGVGKTAISRRL 73 D +L NILL+GP+GVGKT +++ L Sbjct: 150 HPLDSHQRTIHIGSPMQDMIESRLGRSSSFTDTSMTQLEKSNILLLGPSGVGKTLMAKTL 209 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEER 133 AR+ PF + T FT+ GY+G + + + L+ A V ++ R + ++ ++ Sbjct: 210 ARVLDVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEKAERGII----CLDEVDK 265 Query: 134 ILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLS 193 I A V + V + L+ E + ++ ++ SS + PG G S Sbjct: 266 IATARVSHGKDVSGEGVQQALLKIVEGTTIQVQVKPEKNSSRPAG-GAPGSFPPGTAPGS 324 Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRL-------------IDMDTVHRDSIQM 240 S SG QK E+ +D + I MD + + S+ Sbjct: 325 GFNSSSTASGPPP------QKG--EVYNVRTDNILFIFSGAFVGLNKIIMDRISKSSMGF 376 Query: 241 VENYGIVFLDEFDKIVARDSGN------GIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 + + + ++D+ N G E + + LP ++ T + Sbjct: 377 GQPVRASSISSGNGSSSQDASNETPIPIAPGSEEEALYKKYLPFFTSATPLTS----QEE 432 Query: 295 HILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 I F +S PADL +PE+ GR PV L SL+ S ILT+ ++LI QY Sbjct: 433 PIYF---NPLDLSTPADLQKYGFIPELVGRIPVTTALSSLSHSLLLRILTEPRNSLITQY 489 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + L GI L FT ++ +A A+ + + GAR L+T +E +L D F A Sbjct: 490 ETLFDLSGIKLSFTTPALHKIASNALTMGT-----GARALRTELETILSDAMFEAPGSSV 544 Query: 410 KTVVI 414 K V++ Sbjct: 545 KFVLV 549 >gi|311064595|ref|YP_003971320.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium bifidum PRL2010] gi|310866914|gb|ADP36283.1| ClpX ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium bifidum PRL2010] Length = 437 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 60/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYG--------- 289 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 196 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPVEGTRKHRDQD 254 Query: 290 --SINTDHILFIASGAF------------------------HVSRPAD------------ 311 +I+T ILFI GAF H +P + Sbjct: 255 TVTIDTRGILFICGGAFVGLSDIVAGRLGRHESGFGASWHDHEVKPEELLEQVSADDLAE 314 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV L L ++D ILT+ ++ L+ QY+++ +G+ L FTE +++A Sbjct: 315 FGLLPEFIGRLPVVSVLDELTEADLARILTEPKNALVKQYRKMFAVDGVDLVFTEQAVNA 374 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A A+ + GAR L++++E+ LE+ F + + + V++DA VR Sbjct: 375 IATTAITRGT-----GARGLRSIIEKTLEETMFELPGMDDVQQVIVDAASVR 421 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 26/126 (20%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------------------------ 44 P EI + LDRY+IGQ AKR +++A+ N ++R + Sbjct: 65 PAEISAYLDRYVIGQSAAKRTLSVAVYNHYKRVNMELHESAGQLDGKKQALGRRRRTDPL 124 Query: 45 ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 AD+ E+ NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ Sbjct: 125 ADV--EVAKSNILLLGPTGVGKTYLAQSLAKVMNVPFVITDATTLTEAGYVGDDVETVLQ 182 Query: 105 DLVDVA 110 L+ A Sbjct: 183 RLISAA 188 >gi|306833689|ref|ZP_07466816.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis ATCC 700338] gi|304424459|gb|EFM27598.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus bovis ATCC 700338] Length = 409 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ LD Y++GQ AKRA+A+A+ N ++R A+ R+E L NIL++GPTG Sbjct: 64 PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNRKIDENASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+A+ A Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F +E T V Sbjct: 358 IERKT-----GARGLRSIIEETMMDIMFEIPSQEEVTKV 391 >gi|108761752|ref|YP_630244.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] gi|8134368|sp|Q9X5N1|CLPX_MYXXA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|4838464|gb|AAD31003.1|AF127082_2 ATP-dependent protease ATPase subunit ClpX [Myxococcus xanthus] gi|108465632|gb|ABF90817.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] Length = 427 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 68 PSEIKAVLDEYVIGQERAKKTLSVAVHNHYKRIESKVAMEDVELQKSNILLLGPTGSGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 179 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 67/239 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 180 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 240 DTTNILFICGGAFGGLDQVIERRMGGRSLGFGADVQSKKQRSLTELLKHVE-PEDLLKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L+ L+++ IL ++ L QY++L + +G+ L FT+ ++ A+A Sbjct: 299 MIPEFIGRLPIITALEELDEAALINILNQPKNALTKQYRKLFELDGVTLKFTDGALKAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--------LQEKTVVIDAEYVRLH 422 + A+ + GAR L++++E + D+ + + E+ ++ +E V LH Sbjct: 359 NEAIRRKA-----GARGLRSILESAMLDVMYEIPSRKTAREVLISEEVILKKSEPVVLH 412 >gi|315130694|gb|EFT86680.1| ATP-dependent protease ATP-binding subunit [Staphylococcus aureus subsp. aureus CGS03] Length = 398 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + + ILT ++ L+ QY ++++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 + + GAR L++++E L DI F + T VVI A+ + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTIE 398 >gi|295109357|emb|CBL23310.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus obeum A2-162] Length = 437 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ +AK+A+++A+ N ++R +L EL NIL++GPTG GK Sbjct: 66 LKPEEIHKILDDYVIGQDEAKKALSVAVYNHYKRITASRNLDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 57/212 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 177 QYGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 236 Query: 290 SINTDHILFIASGAFH--------------------VS--------------RPAD---- 311 I+T +ILFI GAF VS P D Sbjct: 237 QIDTTNILFICGGAFDGIEKTIEARQDTKSIGFGADVSVQEERNIGEVLKDVMPEDFIKY 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ V L L++ IL + +++L QY +L + +G+ L+F ED++ + Sbjct: 297 GLIPEFIGRVPIVVTLDGLDEEALIRILKEPKNSLTKQYHKLFELDGVELEFEEDALKEV 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A ++ + GAR L+++ME+ L D+ + Sbjct: 357 ARKSLERKT-----GARGLRSIMEKSLMDLMY 383 >gi|302342889|ref|YP_003807418.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus baarsii DSM 2075] gi|301639502|gb|ADK84824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfarculus baarsii DSM 2075] Length = 417 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI + +D Y++ Q+ AK+ +A+A+ N ++R AD+ EL NILL+GPTG GKT Sbjct: 65 PREIKAIIDDYVVEQERAKKILAVAVHNHYKRIDAKADMGGVELQKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE II +L+ A V ++R Sbjct: 125 LLAQTLARIINVPFTIADATTLTEAGYVGEDVENIILNLLQAADYDVERAQR 176 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 58/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFVKV 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF RP DL+ Sbjct: 237 DTTNILFICGGAFVGLDKIISNRIGAKSMGFTAEVKERKEETPLGDTLAKCRPEDLIKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L++ ILT+ ++ L+ QY++L + EG+ L FT+++ A+A Sbjct: 297 LIPEFVGRLPVAATLDELSEDALIRILTEPKNALVKQYQKLFEFEGVDLKFTDEAYKAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A++ S GAR L++++E + DI + L+ Sbjct: 357 AEAISRKS-----GARGLRSILEAAMLDIMYDLPSLK 388 >gi|222148265|ref|YP_002549222.1| ATP-dependent protease ATP-binding subunit ClpX [Agrobacterium vitis S4] gi|254763828|sp|B9JVD6|CLPX_AGRVS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|221735253|gb|ACM36216.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis S4] Length = 425 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 68 TPQDIIKILDEYVIGQRQAKKILSVAVHNHYKRLSHASKGGDVELAKSNILLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVVSPEDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+++ME++L D F +L+ + VVI E VR Sbjct: 361 KAITRKT-----GARGLRSIMEKILLDTMFELPELEGVREVVISDEVVR 404 >gi|110633523|ref|YP_673731.1| ATP-dependent protease ATP-binding subunit [Mesorhizobium sp. BNC1] gi|123162493|sp|Q11J59|CLPX_MESSB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110284507|gb|ABG62566.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chelativorans sp. BNC1] Length = 424 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 67 TPQEIMEVLDDYVIGQTYAKRVLSVAVHNHYKRLAHAGKNADVELSKSNILLIGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T ILFI GAF VS P D L Sbjct: 240 DTSSILFICGGAFAGLEKIISDRGKKTSIGFGASVSSPEDRRAGELLRQVEPEDLLKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 300 IPEFVGRLPILATLEDLDEEALVQILTEPKNALVKQYQRLFEMENVELTFHENALRAIAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+++ME +L D F L+ Sbjct: 360 KAIERKT-----GARGLRSIMEAILLDTMFELPALE 390 >gi|260596810|ref|YP_003209381.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter turicensis z3032] gi|260215987|emb|CBA28640.1| ATP-dependent Clp protease ATP-binding subunit clpX [Cronobacter turicensis z3032] Length = 424 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + + E + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMDEVEKVVID 399 >gi|315499704|ref|YP_004088507.1| ATP-dependent clp protease, ATP-binding subunit clpx [Asticcacaulis excentricus CB 48] gi|315417716|gb|ADU14356.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis excentricus CB 48] Length = 419 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R A D EL NI+L+GPTG GK Sbjct: 65 TPKEIREVLDDYVIGQAQAKKVLSVAVHNHYKRLNHAAKGNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF H P DL+ Sbjct: 238 DTTNILFICGGAFAGLEKIISGRGKGTSIGFGATVKDPEERRLGEVLHQVEPDDLMKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT+ ++ L+ QY L + E + L FT++++ A+A Sbjct: 298 IPEFIGRLPVLATLEDLDEATLVKILTEPKNALVKQYARLFEMENVTLTFTDEALFAVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ V GAR L++++E +L D + ++Q + VVI+AE V Sbjct: 358 KAI-----VRKTGARGLRSILEGILLDTMYELPNMQGVEEVVINAEVV 400 >gi|238018908|ref|ZP_04599334.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748] gi|237864392|gb|EEP65682.1| hypothetical protein VEIDISOL_00768 [Veillonella dispar ATCC 17748] Length = 410 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI + LD Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 55 TPREIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 114 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA++ PF + T TE GYVG +VE I+ ++ A +I R R Sbjct: 115 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 167 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 57/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 168 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 227 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 228 DTTNILFICGGAFDGMDKVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 287 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L FTED+++ +AD Sbjct: 288 IPEFIGRLPVVVTLDQLDREALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 347 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 A+ + GAR L+ ++E+V++ + F + E Sbjct: 348 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPE 379 >gi|331086219|ref|ZP_08335301.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406378|gb|EGG85892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 9_1_43BFAA] Length = 425 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ +AK+ +A+++ N ++R DL EL NIL++GPTG GK Sbjct: 64 LKPEEIKAFLDDYVIGQDEAKKVLAVSVYNHYKRIMAEKDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TFLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIP 235 Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312 I+T +ILFI GAF SR P DL Sbjct: 236 IDTTNILFICGGAFEGIEKIIESRVDKKSIGFNSKMTGANEHDKDKLLSQVLPQDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L++ ILT+ +S ++ QY++L++ +G+ L F ED++ +A Sbjct: 296 LIPELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 ++++ + GAR L+ ++E V+ D F SD + KT I V+ Sbjct: 356 KISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 400 >gi|226227817|ref|YP_002761923.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas aurantiaca T-27] gi|226091008|dbj|BAH39453.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemmatimonas aurantiaca T-27] Length = 420 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +PREI + LD+Y+IGQ AK+A+++A+ N ++R + R+ EL NILL+GPTGV Sbjct: 59 TPREIKNTLDQYVIGQDLAKKALSVAVYNHYKRINASSSAREDDVELDKSNILLIGPTGV 118 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ V E R Sbjct: 119 GKTLLAQTLARILDVPFTIADATTLTEAGYVGEDVENILVRLLQAGDFNVAECER 173 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 93/215 (43%), Gaps = 62/215 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S +Y I Sbjct: 174 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEYIQI 233 Query: 292 NTDHILFIASGAFH--------------------------VS-------------RPADL 312 NT ILFI GAF VS P DL Sbjct: 234 NTKDILFICGGAFDGLEKIIEARTGRRMIGFGDEKPDTKVVSIGKTTPKTPFAEVEPDDL 293 Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L PE+ GR PV V L++L++ IL + ++ L QY+ L E + + F E ++ Sbjct: 294 LRFGIIPELVGRLPVCVPLEALDEEALMSILKEPKNALTKQYQRLFDLEEVKITFEESAL 353 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ + GAR L+ ++E L D F Sbjct: 354 RAVAAKALRRGT-----GARGLRAILEETLLDTMF 383 >gi|156935009|ref|YP_001438925.1| ATP-dependent protease ATP-binding subunit ClpX [Cronobacter sakazakii ATCC BAA-894] gi|166214776|sp|A7MFI7|CLPX_ENTS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|156533263|gb|ABU78089.1| hypothetical protein ESA_02860 [Cronobacter sakazakii ATCC BAA-894] Length = 424 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI S LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + ++E + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEEVEKVVID 399 >gi|306831538|ref|ZP_07464696.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426323|gb|EFM29437.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 409 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ LD Y++GQ AKRA+A+A+ N ++R A+ R+E L NIL++GPTG Sbjct: 64 PKELLATLDEYVVGQDRAKRALAVAVYNHYKRVSF-AESRNEEDVDLQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 177 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFCQNNRKIDENASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+A+ A Sbjct: 298 EFIGRLPVVAALEQLTADDLVRILTEPRNALVKQYQTLLSYDGVELEFDKDALQAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + IGAR L++++E + DI F +E T V Sbjct: 358 IERK-----IGARGLRSIIEETMMDIMFEIPSQEEVTKV 391 >gi|282860205|ref|ZP_06269279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella bivia JCVIHMP010] gi|282587026|gb|EFB92257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella bivia JCVIHMP010] Length = 411 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++++ N ++R QQ D E+ NI++VG TG GKT Sbjct: 64 PQEIKQYLDEYIIGQDEAKRYLSVSVYNHYKRLQQEKGDDGVEIEKSNIIMVGSTGTGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 124 LLARTIAKLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 166 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ +L L+EG+ V+ Y + Sbjct: 176 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGTMVNVPPKGGRKHPDQDYIHV 235 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 236 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKKDLMKYVLPQDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+K R IL +++++ QY +L +GI L FTE+++D + D Sbjct: 296 PEIIGRLPVLTYLNPLDKEALRRILVQPKNSIVKQYIKLFAMDGIKLSFTEEALDYIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV +GAR L++++E V+ D F Sbjct: 356 AVEYK-----LGARGLRSIVESVMMDAMF 379 >gi|254441479|ref|ZP_05054972.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Octadecabacter antarcticus 307] gi|198251557|gb|EDY75872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Octadecabacter antarcticus 307] Length = 422 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ+ AKR +++A+ N ++R AD D EL NI+L+GPTG GK Sbjct: 65 TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNIMLIGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILF+ GAF + P DLL Sbjct: 237 DTTNILFVCGGAFAGLDKIIAQRGKGAGMGFGAEVRGPDERGVGEIFNDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDALVAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F + T VV++ E V Sbjct: 357 RAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 399 >gi|51246389|ref|YP_066273.1| ATP-dependent protease ATP-binding subunit [Desulfotalea psychrophila LSv54] gi|61211470|sp|Q6AK60|CLPX_DESPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50877426|emb|CAG37266.1| probable ATP-dependent Clp protease, ATPase subunit (ClpX) [Desulfotalea psychrophila LSv54] Length = 419 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+++ + LD Y+IGQ AK+ +A+A+ N ++R P +L D EL NI+L+GPTG G Sbjct: 66 PKDVKAHLDDYVIGQAYAKKVLAVAVHNHYKRIDAPVELLDDSVELQKSNIILLGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 126 KTLVAQTLAKILNVPFSVADATTLTEAGYVGDDVENILVSLLQAADYDVEKAQR 179 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + + VS EGVQ+ LL ++EG+ SV K G I Sbjct: 180 GIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQELVKI 239 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF RP DLL Sbjct: 240 DTTNILFICGGAFVGLGRVVKRRAGKKSIGFSADLSADKRSESELLEAVRPEDLLKFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV L+ L++ D IL + ++ L Q+++L + EG+ L FTE S+ A+A Sbjct: 300 PELVGRLPVIASLRELSEDDLVRILREPKNALTRQFEKLFQFEGVKLTFTEGSLAAVAKK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ S GAR L++V+E + DI + S S++QE + V+ D EY L G+ Sbjct: 360 AIARKS-----GARGLRSVLEEAMLDIMYDIPSLSNVQECIVNEQVITDGEYPVLLYGE 413 >gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] Length = 421 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPQEIRGVLDDYVIGQGRAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 THLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKAENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGRSTSIGFAASVMAPEDRKTGELFAELEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL + ++ L+ QY+ L + E + L F ED++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEDALVSILREPKNALVAQYQRLFEMENVELTFHEDALKAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + + L+ K VVI AE V Sbjct: 358 KAIERKT-----GARGLRSILEAILLETMYELPGLKGVKEVVISAEVV 400 >gi|121601766|ref|YP_988861.1| ATP-dependent protease ATP-binding subunit [Bartonella bacilliformis KC583] gi|166214756|sp|A1USA8|CLPX_BARBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120613943|gb|ABM44544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bartonella bacilliformis KC583] Length = 424 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ+ AKR +++A+ N ++R + EL NILLVGPTG GK Sbjct: 67 TPQEIIEVLDDYVIGQRYAKRVLSVAVHNHYKRLAHQSKNNAIELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 179 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H P DL Sbjct: 240 DTTNILFICGGAFAGLERIISGRGEKTSIGFSATIKAPDERRVGEIFHDLEPEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+ IL+ ++ L+ QY+ L + E + L F ED++ A+A+ Sbjct: 300 IPEFIGRLPIIATLEDLDIDALVRILSQPKNALVKQYQHLFEMENVELTFHEDALRAIAN 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME++L D F L+ + VVI ++ V Sbjct: 360 KAIERKT-----GARGLRSIMEKILLDTMFELPALEGVQKVVISSDVV 402 >gi|268316268|ref|YP_003289987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus marinus DSM 4252] gi|262333802|gb|ACY47599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodothermus marinus DSM 4252] Length = 419 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPT 62 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R Q +D D EL NILL+GPT Sbjct: 65 LTPPEIKAALDEYVIGQERAKKTLAVAVYNHYKRIDHQHYLSDYDDVELEKSNILLIGPT 124 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 GTGKTLLARTLARILDVPFSISDATALTEAGYVGEDVESILAHLLHAA 172 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 111/236 (47%), Gaps = 60/236 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V K G +I Sbjct: 182 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTIAGVPPKGGRKHPEQNLINI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 242 DTRNILFICGGAFEGLEEIIARRLSTSSIGFFASGGKRVDPKDPRIFYYVEPDDLLKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L++L+ R ILT+ ++ L+ QY++L +GI L F E+++DA+ + Sbjct: 302 IPEFIGRLPVITPLEALSDEALRSILTEPKNALVRQYQKLFAMDGIELIFEEEALDAIVE 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFP 427 A L + GAR L+ VME V+ DI F+ + + V I A VR G+ P Sbjct: 362 RARELGT-----GARGLRAVMEEVMLDIMFNIHTMPDVGVCRITAATVRY--GEAP 410 >gi|313887830|ref|ZP_07821510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846173|gb|EFR33554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus harei ACS-146-V-Sch2b] Length = 405 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 6/106 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI LD+Y++ Q+DAKRA+A+A+ N ++R + + +D+ EL NIL++GPTG Sbjct: 60 PAEIKEILDQYVVKQEDAKRALAVAVYNHYKRISSTRTVSSDI--ELQKSNILMIGPTGS 117 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE II L+ A Sbjct: 118 GKTLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENIILKLIQNA 163 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 60/237 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 173 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPSQEFIQV 232 Query: 292 NTDHILFIASGAFH---------------------VSRPAD-----------------LL 313 +T +ILFI GAF V + A L+ Sbjct: 233 DTSNILFIVGGAFDGIDKIIENRTAKSSMGFGSEIVDKKAKQENILQKVETEDLLKFGLI 292 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV + L+ L++ ILT ++ L+ QYKEL+K + + L F +++++ +A Sbjct: 293 PELIGRLPVTITLEELDEEALVEILTKPKNALVKQYKELLKFDDVDLIFDDEALNYIARK 352 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSE 429 A+ + GAR L+ V+E + ++ + + K V I E V G P+E Sbjct: 353 AIEKKA-----GARGLRGVIENTIMNVMYEIPSRDDIKAVKITKESVE---GTAPAE 401 >gi|27262354|gb|AAN87458.1| ATP-dependent clp protease ATP-binding subunit ClpX [Heliobacillus mobilis] Length = 420 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ AK+A+++A+ N ++R L + + D EL NI+++GPTG GK Sbjct: 64 KPKEIREILDQYVIGQDQAKKALSVAVYNHYKRINLGSKIDDIELQKSNIVMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 236 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 237 DTTNILFICGGAFDGIDKLIMNRVGKKAMGFNADIKGKQDKNIGEVLRDILPGDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT+ ++ LI QY++ + + + L+F ++++ A+A Sbjct: 297 IPEFVGRLPVIVTLDALDEDALVRILTEPKNALIKQYQKFFELDQVNLEFQDEALRAIAH 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E V+ D+ F Sbjct: 357 EAIKRNT-----GARGLRAIIEEVMLDVMF 381 >gi|197302445|ref|ZP_03167500.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC 29176] gi|197298343|gb|EDY32888.1| hypothetical protein RUMLAC_01173 [Ruminococcus lactaris ATCC 29176] Length = 423 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P E+ + LD+Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 64 LTPEEMKAFLDQYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 57/212 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF + P DL Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRIDRKSIGFNAEIATKHEYDMDVLLQEALPQDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L L++ ILT+ +S ++ QY++L++ +G+ L+F +D++ +A Sbjct: 296 LIPELVGRLPVTVSLDLLDRDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDALLEIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 D + + GAR L+ +ME ++ D F+ Sbjct: 356 DTTLKRKT-----GARGLRAIMENIMMDTMFT 382 >gi|260432981|ref|ZP_05786952.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter lacuscaerulensis ITI-1157] gi|260416809|gb|EEX10068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter lacuscaerulensis ITI-1157] Length = 422 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ +D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQARAKRVLSVAVHNHYKRLNHAQKAGSDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDERGVGEIFQDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E + LDFTED++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELENVELDFTEDALKAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F ++ T VV++ E V Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMKNVTKVVVNEEAV 401 >gi|329946416|ref|ZP_08293983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 170 str. F0386] gi|328527392|gb|EGF54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 170 str. F0386] Length = 440 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P+EI L++Y+IGQ+ AKRA+++A+ N ++R Q+ E L NILL+GPTG Sbjct: 71 PQEIFDFLNQYVIGQESAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 130 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+ + + Sbjct: 131 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 186 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S G I Sbjct: 187 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 246 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFIA+GAF RP DL Sbjct: 247 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLDGSTSSKDVFTSPVRPEDLHK 306 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV ++ L + ++T+ ++ L+ QY+ L +G+ L+ T+ +I+A Sbjct: 307 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 366 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A +A+ + GAR L +++E VL F L E VV+DA+ VR Sbjct: 367 VASLALERKT-----GARGLTSIVEEVLGQSMFEVPSLPEVGRVVVDADAVR 413 >gi|159039406|ref|YP_001538659.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora arenicola CNS-205] gi|189044146|sp|A8M1K7|CLPX_SALAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157918241|gb|ABV99668.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salinispora arenicola CNS-205] Length = 429 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63 P EI LD Y++GQ AK+A+A+A+ N ++R Q P EL NILL+GPTG Sbjct: 64 PMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEAVGAPGTDSVELAKSNILLLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 CGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313 +T ++LFI GAF VS P D+L Sbjct: 240 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMPEDMLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +++SL++S ILT+ + L+ QY+ L + +G+ L+F + +++A+AD Sbjct: 300 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAVAD 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 360 QAM-LRGT----GARGLRAIMEEVLLSVMY 384 >gi|99081367|ref|YP_613521.1| ATP-dependent protease ATP-binding subunit ClpX [Ruegeria sp. TM1040] gi|123077615|sp|Q1GGF7|CLPX_SILST RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|99037647|gb|ABF64259.1| ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria sp. TM1040] Length = 421 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAGVGETFRDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT++++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F ++ T VV++ E V Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMFELPGMESVTKVVVNEEAV 401 >gi|145596009|ref|YP_001160306.1| ATP-dependent protease ATP-binding subunit ClpX [Salinispora tropica CNB-440] gi|189044149|sp|A4XAH9|CLPX_SALTO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145305346|gb|ABP55928.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salinispora tropica CNB-440] Length = 429 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63 P EI LD Y++GQ AK+A+A+A+ N ++R Q P+ EL NILL+GPTG Sbjct: 64 PMEICQFLDNYVVGQAQAKKALAVAVYNHYKRIQAEATGAPSADSVELAKSNILLLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 CGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313 +T ++LFI GAF VS P D+L Sbjct: 240 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDTFSQVMPEDMLKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +++SL++ ILT+ + L+ QY+ L + +G+ L+F + +++A+AD Sbjct: 300 IPEFIGRLPVITNVRSLDRPALVQILTEPRNALVRQYQRLFELDGVELEFEQSALEAIAD 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ L T GAR L+ +ME VL + + S+ V+I+ E V Sbjct: 360 QAM-LRGT----GARGLRAIMEEVLLSVMYEVPSNPDAARVLINREVV 402 >gi|209521457|ref|ZP_03270165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. H160] gi|209498113|gb|EDZ98260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. H160] Length = 423 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPGALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397 >gi|307566219|ref|ZP_07628667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella amnii CRIS 21A-A] gi|307345077|gb|EFN90466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prevotella amnii CRIS 21A-A] Length = 410 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ +AKR +++++ N ++R QQ D E+ NI++VG TG GKT Sbjct: 66 PQEIKKYLDEYIIGQDEAKRYLSVSVYNHYKRLQQQKKDDGVEIEKSNIIMVGSTGTGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T FTE GYVG +VE I+ L+ VA Sbjct: 126 LLARTIAKLLEVPFTIVDATVFTEAGYVGEDVESILSRLLQVA 168 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI + I VS EGVQ+ +L L+EG+ V+ Y + Sbjct: 178 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGMLKLLEGTIVNVPPKGGRKHPDQDYIHV 237 Query: 292 NTDHILFIASGAF-------------HVSR--------------------PADL-----L 313 +T +ILFI GAF HV P DL + Sbjct: 238 DTKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQNVAKIDKEDLMKYVLPQDLKSFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L LN+ R IL +++++ QY +L +GI L FT+ ++D + D Sbjct: 298 PEIIGRLPVLTYLTPLNRDALRRILVQPKNSIVKQYIKLFDMDGIKLSFTDSALDYIVDK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV +GAR L++++E V+ D F K + +YV Sbjct: 358 AVEYK-----LGARGLRSIVESVMMDAMFEIPSQNIKNFEVTKDYV 398 >gi|295676518|ref|YP_003605042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1002] gi|295436361|gb|ADG15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1002] Length = 423 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 TPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFSMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397 >gi|227529061|ref|ZP_03959110.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis ATCC 49540] gi|227351073|gb|EEJ41364.1| ATP-dependent protease ATP-binding subunit [Lactobacillus vaginalis ATCC 49540] Length = 417 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI+S+LD Y+IGQ DAK+ +++A+ N ++R D D EL NI ++GPTG Sbjct: 63 TPEEIMSKLDDYVIGQSDAKKTLSVAVYNHYKRVNAMTTGDNNDTELQKSNIAVIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTNSDEAANVTEKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL++ +G L FT+ ++ A+A Sbjct: 297 LIPEFIGRLPVMTALQKLDEDDLVRILTEPKNALVKQYQELIRLDGSQLTFTDGALRAMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A+ N+ GAR L++++E V+ D+ F S D+++ V+ID V H Sbjct: 357 QLAIKRNT-----GARGLRSIIEGVMRDVMFDLPSRKDVEK--VIIDKRCVTQH 403 >gi|88607602|ref|YP_505536.1| ATP-dependent protease ATP-binding subunit [Anaplasma phagocytophilum HZ] gi|123494661|sp|Q2GJB5|CLPX_ANAPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|88598665|gb|ABD44135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaplasma phagocytophilum HZ] Length = 415 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 1/116 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63 F+ PREI LD Y+IGQ+ +K+ +++A+ N ++R + + + E+ N+LL+GPTG Sbjct: 56 FDLKPREIKEVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +TD+ILFI GAF + P DL + Sbjct: 232 STDNILFIFGGAFDGLEKIIEARNRGSSMGFEANVQSMVSPTKDVLSYAEPEDLVKFGLI 291 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L+++ +L + +++L+ QY +L + + + L F +D++ A+A Sbjct: 292 PEFIGRIPVITSLGKLDENTLFRVLVEPKNSLVKQYAKLFEMDNLELKFDDDALMAIARK 351 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 AV+ N+ GAR L+ +ME +L D F E V I E V Sbjct: 352 AVDRNT-----GARGLRAIMESLLLDFMFDPQGCAHEGKVSISKEMV 393 >gi|110834072|ref|YP_692931.1| ATP-dependent protease ATP-binding subunit ClpX [Alcanivorax borkumensis SK2] gi|123345580|sp|Q0VQ89|CLPX_ALCBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110647183|emb|CAL16659.1| ATP-dependent Clp protease, ATP-binding subunitClpX [Alcanivorax borkumensis SK2] Length = 426 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P EI LD Y+IGQ+ AK+ +A+A+ N ++R + RDE L NILL+GPTG GK Sbjct: 68 PNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRLRSGGKGRDEVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T ++LFI GAF V R P DL Sbjct: 241 DTSNMLFICGGAFAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLGELLVDVEPEDLVKYG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ + L QY L + EG+ LDF ED++ A+A Sbjct: 301 LIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQYARLFEMEGVELDFREDALKAIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ V GAR L++++E VL D + ++ VVID+ ++ Sbjct: 361 NKAM-----VRKTGARGLRSILESVLLDTMYQVPSMESVAKVVIDSPTIK 405 >gi|75676089|ref|YP_318510.1| ATP-dependent protease ATP-binding subunit [Nitrobacter winogradskyi Nb-255] gi|123773227|sp|Q3SRD3|CLPX_NITWN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|74420959|gb|ABA05158.1| ClpX, ATPase regulatory subunit [Nitrobacter winogradskyi Nb-255] Length = 424 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|333029343|ref|ZP_08457404.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides coprosuis DSM 18011] gi|332739940|gb|EGJ70422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides coprosuis DSM 18011] Length = 413 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS ++ K + Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIINVPPQGGRKHPDQKMIPV 239 Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313 NT +ILFI GAF HV SR P DL + Sbjct: 240 NTKNILFICGGAFDGIERRIAQRLNTHVVGYNASRDTAKVDMTNLIKYITPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I Q ++L++ +G+ L F ED D + D Sbjct: 300 PEIIGRLPILTYLNPLDRDALRRILTEPKNSVIKQNQKLLQMDGVDLKFNEDVFDYIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E ++ D+ + + K + +Y + Sbjct: 360 AIEFK-----LGARGLRSIVETIMIDVMYEVPSMDVKEYAVTLDYAK 401 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P E+ LD Y+IGQ DAKR +++A+ N ++R Q +D E+ NI++VG TG GKT Sbjct: 68 PSEVKQFLDDYVIGQDDAKRYLSVAVYNHYKRILQDNSDDEVEIEKSNIIMVGSTGTGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+ PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 128 LLARTIAKQLNVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 170 >gi|297616503|ref|YP_003701662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophothermus lipocalidus DSM 12680] gi|297144340|gb|ADI01097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Syntrophothermus lipocalidus DSM 12680] Length = 417 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R L L D EL NIL++GPTG GKT Sbjct: 65 PQEIKDILDQYVIGQEKAKKILAVAVYNHYKRINLGTKLDDVELQKSNILMLGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIVYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 237 DTSNILFICGGAFEGIDKIIQNRVGQKSMGFGADIKTKKEKKIGEILEQILPQDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L++S ILT+ ++ L+ QY++L +G+ L+FT+D++ A+A+ Sbjct: 297 IPEFVGRVPIIVTLDALDESALVRILTEPKNALVRQYQKLFDMDGVNLEFTDDALKAIAE 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ ++ GAR L+ ++E V+ D+ + Sbjct: 357 EAMRRST-----GARGLRAIVEDVMLDVMY 381 >gi|90021256|ref|YP_527083.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharophagus degradans 2-40] gi|123277147|sp|Q21KA8|CLPX_SACD2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|89950856|gb|ABD80871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Saccharophagus degradans 2-40] Length = 431 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 4/104 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63 +P+EI LD Y+IGQ+ AK+ +A+A+ N ++R ++ + EL NILLVGPTG Sbjct: 68 TPQEISETLDEYVIGQKQAKKVLAVAVYNHYKRLRVGDKKKSKDDVELGKSNILLVGPTG 127 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 SGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 171 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T +ILFI GAF V R P DL Sbjct: 244 DTGNILFICGGAFAGLDKVIRDRSEKGGIGFSAEVKSKDSGKNVGETLRELEPEDLVRYG 303 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ IL + +++L+ QY +L + EG +DF +D+++A+A Sbjct: 304 LIPEFVGRLPVIATLDELDQDALVRILKEPKNSLVKQYSKLFEMEGSEVDFRDDALEAVA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ + GAR L+++ME VL D + Sbjct: 364 NKAMERKT-----GARGLRSIMENVLLDTMY 389 >gi|118579612|ref|YP_900862.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter propionicus DSM 2379] gi|166214798|sp|A1AN84|CLPX_PELPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|118502322|gb|ABK98804.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter propionicus DSM 2379] Length = 418 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65 PREI LD Y+IGQ+ AK+ +++A+ N ++R + P D+ E+ NILL+GPTG G Sbjct: 66 PREIKDVLDEYVIGQEKAKKVLSVAVYNHYKRIETSNKPGDV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILSLLQAA 168 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + + VS EGVQ+ LL ++EG+ S+ K G + Sbjct: 178 GIIYIDEIDKIARKSESPSLTRDVSGEGVQQALLKIIEGTVASIPPKGGRKHPQQEFMKV 237 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTTNILFICGGAFAGLDSVIQQRIGMKSLGFGADVKKRAEKKLGELLLNVTPDDLLKYGY 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ IL + +++L+ QY++L + E + L FT+ S+ A+A Sbjct: 298 IPEFIGRLPMLATLTELDEDAMVQILKEPKNSLVKQYQKLFELENVRLRFTDGSLVAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ N+ GAR L++++E + DI + S K VVI E + Sbjct: 358 EALKRNT-----GARGLRSILENSMLDIMYEVPSQPNVKEVVISEEVI 400 >gi|254492062|ref|ZP_05105238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga thiooxidans DMS010] gi|224462726|gb|EEF78999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylophaga thiooxydans DMS010] Length = 423 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 5/103 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +PREI LD Y+IGQ+ AKR +++A+ N ++R L + +D EL NILL+GPTG Sbjct: 65 TPREINEALDNYVIGQEKAKRYLSVAVYNHYKR--LRSGHKDDGVELSKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 123 GKTLLAETLARQLNVPFTMADATTLTEAGYVGEDVENIIQKLL 165 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T ILFI GAF P DL+ Sbjct: 238 DTSKILFICGGAFAGLDKVIRNRTHKGGIGFSADVKSLDEQRPLSESLRTVEPEDLIQYG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+++ ILT+ ++ L QY+ L EG L+F +D++ A+A Sbjct: 298 LIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQYQRLFDMEGADLEFRDDALSAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D F L VVID Sbjct: 358 RKAMERKT-----GARGLRSIIENVLLDTMFDLPSLDNISKVVID 397 >gi|92117751|ref|YP_577480.1| ATP-dependent protease ATP-binding subunit ClpX [Nitrobacter hamburgensis X14] gi|122417675|sp|Q1QL77|CLPX_NITHX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91800645|gb|ABE63020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrobacter hamburgensis X14] Length = 424 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 297 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 357 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 400 >gi|82703456|ref|YP_413022.1| ATP-dependent protease ATP-binding subunit [Nitrosospira multiformis ATCC 25196] gi|123543991|sp|Q2Y6J1|CLPX_NITMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|82411521|gb|ABB75630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosospira multiformis ATCC 25196] Length = 425 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI LD+Y+IGQ+ AK+ +++A+ N ++R + A D EL NILL+GPTG Sbjct: 66 PHEIRQILDQYVIGQEQAKKILSVAVYNHYKRLRTLAKSADPDEIELAKSNILLIGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 103/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQV 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADL---- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFDGLEKIIRARSEKGGIGFSASVRSQDNRKDFGAVLRGVEPEDLVKYG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII-LDFTEDSIDAL 370 +PE GR PV L+ L+++ ILT+ + LI QY+++ EG I L+F E ++ A+ Sbjct: 301 LIPEFVGRLPVVATLEELDEAALIQILTEPRNALIKQYQKMFHMEGGIDLEFREQALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ V GAR L++++E L D F L+ VVID Sbjct: 361 ARKAL-----VRKTGARGLRSILEAALLDTMFDLPSLENVAKVVID 401 >gi|291518669|emb|CBK73890.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Butyrivibrio fibrisolvens 16/4] Length = 428 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P ++ + LD+Y+IGQ +AK+ +++A+ N ++R P D+ EL N+L++GPTG GKT Sbjct: 67 PEDMKAFLDQYVIGQDEAKKVLSVAVYNHYKRIMANPDDIDVELQKSNVLMLGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ G PF + T TE GYVG +VE I+ L+ A Sbjct: 127 LLAQTLARVLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G +I Sbjct: 179 GIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQETIAI 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312 +T +ILFI GAF + P D L Sbjct: 239 DTKNILFICGGAFEGLEKIISQRTNVSAIGFGADVKDKNNQKIDELLQQALPQDFIKYGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ V L L + D IL + +++L QY+ L K +G+ L F +D++ +A Sbjct: 299 IPEFIGRVPINVSLNELTEDDMIRILKEPKNSLTKQYQALFKMDGVKLFFEDDALREIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ + GAR L+ ++E V+ D + Sbjct: 359 KSIERKT-----GARGLRAIVESVMMDYMY 383 >gi|220932329|ref|YP_002509237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halothermothrix orenii H 168] gi|254763850|sp|B8CY73|CLPX_HALOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219993639|gb|ACL70242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halothermothrix orenii H 168] Length = 416 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 5/111 (4%) Query: 5 FNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59 FN + PREI LD+Y++GQ+ AK+++++A+ N ++R + D EL NIL+V Sbjct: 56 FNLNNIPKPREIKKILDQYVVGQERAKKSLSVAVYNHYKRVNSDMKIDDVELQKSNILMV 115 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 116 GPTGCGKTLLAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAA 166 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFIA GAF SR P DLL Sbjct: 236 DTTNILFIAGGAFDGLDKIIKSRIDNKVMGFGADIKSKTEENVGETLKYILPEDLLRYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L + D ILT+ + L+ QYK+ + + + L+FT +++ A+A Sbjct: 296 IPEFIGRLPVIVTLNELVEEDLVKILTEPRNALVKQYKKFFEMDNVELEFTPEALTAIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422 A+ N+ GAR L+ V+E + DI + S+ VI E ++ H Sbjct: 356 KALERNT-----GARGLRAVVEEAILDIMYDLPSEPGIAKCVITPEVIKNH 401 >gi|218290815|ref|ZP_03494884.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius LAA1] gi|258511811|ref|YP_003185245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239173|gb|EED06374.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius LAA1] gi|257478537|gb|ACV58856.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 423 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+ AKRA+++A+ N ++R + D EL NILL+GPTG GK Sbjct: 64 PTEIKAVLDQYVIGQEHAKRALSVAVYNHYKRINAGSQKNDDVELSKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 63/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 237 DTTNILFICGGAFDGLETIIKRRLGSKVIGFGAAGSASSETKDSAILQHV-LPEDLLKFG 295 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L +L++ + ILT+ ++ ++ Q+++L+ + ++L+F ED+++ +A Sbjct: 296 LIPEFIGRLPVIATLDALDEEALKRILTEPKNAIVKQFQKLLDMDNVVLEFHEDALETIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E ++ D+ + S D+Q K ++ A +R Sbjct: 356 KEAIRRGT-----GARGLRAIIESIMLDVMYELPSRDDVQ-KCIITKAAVLR 401 >gi|108762916|ref|YP_630960.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] gi|108466796|gb|ABF91981.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] Length = 399 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/114 (48%), Positives = 74/114 (64%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65 +PREI LDR++IGQ AKRAVAIA N +R R L+ K NILL+GPTG G Sbjct: 55 LTPREIYERLDRFVIGQDGAKRAVAIAAHNHLKRLLARRLRRTSLIKKSNILLMGPTGSG 114 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT I+R LA + PF V+ T++TE GY G++VE +I DL+ A + V +++R Sbjct: 115 KTHIARNLADILHVPFTTVDATEYTEAGYYGKDVEVMISDLLFKANHSVEDTQR 168 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 52/223 (23%) Query: 245 GIVFLDEFDKIVARDSG--NGIG---VSREGVQRDLLPLVEGSSV-----------STKY 288 GI+F+DE DKI R G NG G + EGVQ+ LL L+EG V + + Sbjct: 169 GIIFIDEVDKIARRSQGARNGAGSRDIGGEGVQQSLLKLLEGREVYVPLNVTQAWNKSDF 228 Query: 289 GSINTDHILFIASGAFH-------VSRPA------------------------DLLPEIQ 317 ++T ILFI +G F R A +L E Sbjct: 229 VQVDTRDILFICAGTFSDLHDDGDEGRRAMGFGAEDSAKRSQKRISTRQLTDFGMLAEFL 288 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR PV V L+ L + D +LT+ +++ +++EL+ + + +DF + + + +V Sbjct: 289 GRLPVVVQLERLGEEDLMRVLTEPPDSIVREFRELLSMDDLEVDFADPGLREVVRYSVER 348 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +GAR L++V+E V+ D+ F A + + + V++DA +VR Sbjct: 349 G-----LGARGLRSVLEHVMADVMFEAPERRRRQVMVDAGFVR 386 >gi|89092955|ref|ZP_01165907.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp. MED92] gi|89082980|gb|EAR62200.1| ATP-dependent protease ATP-binding subunit [Oceanospirillum sp. MED92] Length = 416 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 67/102 (65%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AK+ +A+A+ N ++R + + + EL NILL+GPTG G Sbjct: 57 TPAELSAALDEYVIGQERAKKVLAVAVYNHYKRLRFQKNDKSGVELGKSNILLIGPTGSG 116 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 117 KTLLAQTLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 158 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 171 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 230 Query: 292 NTDHILFIASGAFH-------------------VSRPAD--------------------- 311 +T +ILFI GAF V + D Sbjct: 231 DTSNILFICGGAFAGLEQIIRDRSEKSSIGFSAVVKSKDEEKTVSDSLTELEAEDLVKYG 290 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L++ ILT+ +++L QY L EG +DF ++++ A+A Sbjct: 291 LIPEFVGRLPMIATLAELDEEALVQILTEPKNSLTKQYAALFDMEGAEVDFRQEALLAVA 350 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L DI + ++ VVID Sbjct: 351 QKALERKT-----GARGLRSILEATLLDIMYQLPSMENVSKVVID 390 >gi|314936221|ref|ZP_07843568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus hominis subsp. hominis C80] gi|313654840|gb|EFS18585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Staphylococcus hominis subsp. hominis C80] Length = 420 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R QQL + D EL NI L+GPTG G Sbjct: 63 TPKEIMDHLNDYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 65/242 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF RP DL +P Sbjct: 237 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY +++ + + L+FTE+++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKMLALDNVELEFTEEALAAVSEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDFPSETD 431 + + GAR L++++E L DI + S SD+ + VV+ A+ + I E + Sbjct: 357 IERKT-----GARGLRSIIEESLIDIMYDVPSTSDVAK--VVVTAQTINDEI-----EPE 404 Query: 432 MY 433 MY Sbjct: 405 MY 406 >gi|23014985|ref|ZP_00054777.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Magnetospirillum magnetotacticum MS-1] Length = 422 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P++I LD Y+IGQ AK+ +++A+ N ++R Q +E L NILL+GPTG G Sbjct: 65 TPKDICQVLDDYVIGQGHAKKVLSVAVHNHYKRLQHGGKNNNEVELAKSNILLIGPTGCG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 178 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 239 DTTNILFICGGAFSGLEKIIGSRGRGTSIGFGADVRGPDERRTGEILREVEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ IL+ ++ L+ QY+ L + E L F++D++ A+A+ Sbjct: 299 IPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLSFSDDALKAIAE 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L VVI+ E V Sbjct: 359 KAIARKT-----GARGLRSIMETILLDTMFDLPGLDAVDEVVINKEVV 401 >gi|171059224|ref|YP_001791573.1| ATP-dependent protease ATP-binding subunit ClpX [Leptothrix cholodnii SP-6] gi|238689116|sp|B1Y6H2|CLPX_LEPCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|170776669|gb|ACB34808.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptothrix cholodnii SP-6] Length = 424 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AKR +++A+ N ++R + AD EL NILL+GPTG Sbjct: 69 PSEIKTLLDQYVIGQDAAKRTLSVAVYNHYKRLKHMADKGKGEEVELAKSNILLIGPTGS 128 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 129 GKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 171 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G I Sbjct: 184 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQI 243 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 244 DTTNILFICGGAFDGLEKVIANRSEKSGIGFGATVKSKAERSVSEVFRQIEPEDLIKFGI 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY+ L +G+ L+ + A+A Sbjct: 304 IPELVGRLPVIATLGELTEDALVQILTEPKNALLKQYQRLFGMDGVELEIRPSGLAAIAQ 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 364 KALKRKT-----GARGLRSIVEQALMDTMF 388 >gi|167761298|ref|ZP_02433425.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704] gi|167660964|gb|EDS05094.1| hypothetical protein CLOSCI_03703 [Clostridium scindens ATCC 35704] Length = 419 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ++AK+ +++A+ N ++R D+ EL NIL++GPTG GK Sbjct: 66 LKPEEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMAQKDMGVELNKSNILMLGPTGCGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 169 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ +V + G Sbjct: 178 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 237 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF V R P DL Sbjct: 238 IDTTNILFICGGAFEGIDKIVEKRIDQKSIGFNADIAKKHENDVDRLLAQVLPQDLVKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L+K IL++ ++ ++ QY++L++ +G+ L F + +++A+A Sbjct: 298 LIPELVGRMPVTVALEMLDKKALMQILSEPKNAIVKQYQKLLELDGVDLIFDQKALEAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + ++ + GAR L+ +ME ++ DI + A SD K+ I + V+ Sbjct: 358 ETSLKRKT-----GARGLRAIMENIMMDIMYKAPSDETLKSCRITEDVVK 402 >gi|166031008|ref|ZP_02233837.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC 27755] gi|166029275|gb|EDR48032.1| hypothetical protein DORFOR_00689 [Dorea formicigenerans ATCC 27755] Length = 423 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 70 LKPEEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRIMAQRDLGVELNKSNILMLGPTGCGK 129 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 130 TLLAQSLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI++LDE DKI + I VS EGVQ+ LL +VEG+ +V + G Sbjct: 182 YGIIYLDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 241 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF V + P DL Sbjct: 242 IDTTNILFICGGAFEGIDKIIEKRIDQKSIGFNAEIAEKHEDDVDKLLAQVLPQDLVKFG 301 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L+ ILT+ ++ ++ QY++L++ +G+ L F + +++ +A Sbjct: 302 LIPELVGRVPVTVSLEMLDHDALIRILTEPKNAIVKQYQKLLELDGVKLVFDDSALNEIA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 D+++ + GAR L+ +ME + DI + A SD KT I + V Sbjct: 362 DISLKRKT-----GARGLRAIMENTMMDIMYRAPSDETLKTCRITGDVV 405 >gi|126727091|ref|ZP_01742928.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2150] gi|126703519|gb|EBA02615.1| ATP-dependent protease ATP-binding subunit [Rhodobacterales bacterium HTCC2150] Length = 423 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AKR +++A+ N ++R + EL NI+L+GPTG GK Sbjct: 65 TPKEICEVLDDYVIGQGHAKRVLSVAVHNHYKRLNHAGKGSEIELAKSNIMLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILF+ GAF R P DLL Sbjct: 238 DTTNILFVCGGAFAGLDKIIAQRGKGSSIGFGADVRDEATKGIGETLKDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+ IL++ ++ L+ QY+ L + E L FT+D++ A+ Sbjct: 298 IPEFVGRLPVIATLEDLDLDALVTILSEPKNALVKQYQRLFELEDAELKFTDDALKAIGS 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VV++ E V Sbjct: 358 RAIERKT-----GARGLRSIMEDILLDTMFDLPGLENVSEVVVNEEAV 400 >gi|60115356|gb|AAX14030.1| ATP-binding subunit heat shock protein ClpX [Azospirillum brasilense] Length = 422 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I + LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 65 TPQDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHATKHNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGRGTSIGFGADVRGPDERRTGDILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT ++ L+ QY+ L + E + L+F++D++ ++ Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMENVRLEFSDDALRTISH 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L D F L Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGL 387 >gi|325066965|ref|ZP_08125638.1| ATP-dependent protease ATP-binding subunit ClpX [Actinomyces oris K20] Length = 433 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P+EI L++Y+IGQ+ AKRA+++A+ N ++R Q+ E L NILL+GPTG Sbjct: 64 PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+ + + Sbjct: 124 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S G I Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFIA+GAF RP DL Sbjct: 240 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTGSTASQDVFTSPVRPEDLHK 299 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV ++ L + ++T+ ++ L+ QY+ L +G+ L+ T+ +I+A Sbjct: 300 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 359 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A +A+ + GAR L +++E VL F L E VV+DA+ VR Sbjct: 360 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406 >gi|257439813|ref|ZP_05615568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium prausnitzii A2-165] gi|257197722|gb|EEU96006.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium prausnitzii A2-165] Length = 439 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 67/104 (64%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI + LD+Y+IGQ +AKR +A+++ N ++R EL N+LL+GP+GVGK Sbjct: 81 LTPAEIKNGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGK 140 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 141 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLLQAA 184 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I V EGVQ+ LL ++EG S+V G I Sbjct: 194 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPNGGRKHPQQEFIQI 253 Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312 +T +ILFI GAF ++ R D L Sbjct: 254 DTTNILFICGGAFDGLDKYILRRTDRSALGFGSSLKDNSEDAQRALLRKVEPHDMVKFGL 313 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ +L + ++L+ QYKEL+ + + L+FT++++ A+A Sbjct: 314 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDSVELEFTDEALHAIAR 373 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++VME +L + + Sbjct: 374 KTIERKT-----GARGLRSVMEGILLPVMY 398 >gi|307544937|ref|YP_003897416.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] gi|307216961|emb|CBV42231.1| ATP-dependent protease ATP-binding subunit [Halomonas elongata DSM 2581] Length = 425 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 63/100 (63%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI LD Y+IGQ AK +++A+ N ++R + A EL NILL+GPTG GKT Sbjct: 67 APREIRHTLDDYVIGQDRAKMVLSVAVYNHYKRLRYGAKDEVELGKSNILLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 LLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 166 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTTAQVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T ++LFI GAF V R P DL Sbjct: 239 DTTNMLFIVGGAFAGLDKVIRDRAEKGGIGFNAEVKTKDETKGVGDLLLDVEPEDLVKFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L + ILT+ +++LI QY L EG+ LDF ED++ A+A Sbjct: 299 LIPEFVGRLPVIATLTELTEDALIQILTEPKNSLIKQYARLFDMEGVELDFREDALRAVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ N+ GAR L++++E VL D + ++ VVIDA + Sbjct: 359 AKAMARNT-----GARGLRSILESVLLDTMYEIPSIEGVSKVVIDASVI 402 >gi|183220374|ref|YP_001838370.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910488|ref|YP_001962043.1| ATP-dependent protease ATP-binding subunit ClpX [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687813|sp|B0SMF0|CLPX_LEPBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238687840|sp|B0SEC2|CLPX_LEPBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167775164|gb|ABZ93465.1| ATPase subunit of endopeptidase Clp [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778796|gb|ABZ97094.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 426 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 6/113 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI LD+Y+IGQ+ AK+A+A+A+ N ++R ++ D+ EL NI+L+GPTG Sbjct: 69 PTEIKKILDQYVIGQEQAKKALAVAVYNHYKRIFHNERKAGDV--ELEKSNIMLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 GKT +++ LAR+ PF V+ T TE GYVG +VE II L+ A N V+ + Sbjct: 127 GKTLLAQTLARILKVPFAIVDATALTEAGYVGEDVENIILKLIQNADNDVKRA 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 61/214 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 182 GIIYIDEIDKISRKSDSASITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEYIPV 241 Query: 292 NTDHILFIASGAF--------------------------------------HVSRPADLL 313 T +ILFI GAF H P DL+ Sbjct: 242 ETKNILFICGGAFVGLTDIIKQRVGVKSIGFHSNEVVNDRGRKIEEGESLVHHVIPDDLM 301 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR P+ L L + I T+ +++L+ QY+++ E + L FTE +I+ Sbjct: 302 KFGLIPEFIGRLPIIATLDELTIESLKSIFTEPKNSLLKQYQKMFDIENVKLKFTESAIE 361 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A+ S GAR L+ ++E ++ ++ F Sbjct: 362 AIAQTAIKRES-----GARGLRAIVEEIMMELMF 390 >gi|163746711|ref|ZP_02154068.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] gi|161379825|gb|EDQ04237.1| ATP-dependent protease ATP-binding subunit [Oceanibulbus indolifex HEL-45] Length = 422 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +PR+I LD Y+IGQ AKR +++A+ N ++R Q D+ EL NILL+GPTG Sbjct: 65 TPRDICGVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRDNDARGIGEIFTDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFELEDTQLTFTDDALTAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F L T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFELPGLDTVTEVVVNEEAV 400 >gi|254502854|ref|ZP_05115005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia alexandrii DFL-11] gi|222438925|gb|EEE45604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Labrenzia alexandrii DFL-11] Length = 421 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T ++LFI GAF V P D L Sbjct: 238 DTTNMLFICGGAFAGLDKIISDRGTQTSIGFQAQVHAPEDRRIGELFSELEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A+ Sbjct: 298 IPEFVGRLPVIATLEDLDEDALITILTEPKNALVKQYQRLFEMEQVELSFHEEALRAIAN 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L++++E +L D + L+ K VVI E V+ Sbjct: 358 RAIERKT-----GARGLRSILESILLDTMYELPGLKGVKEVVISPEVVK 401 >gi|291550776|emb|CBL27038.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Ruminococcus torques L2-14] Length = 423 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P E+ + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 64 LTPEEMKAFLDEYVIGQDEAKKVLSVAVYNHYKRILAEQDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKVIQAA 167 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 57/212 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF + P DL Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRIDRKSIGFNAEIASKHEYDMDVLLQEALPQDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L L+K ILT+ +S ++ QY++L++ +G+ L+F +D++ +A Sbjct: 296 LIPELVGRLPVTVSLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDKDALLEIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 + + + GAR L+ +ME ++ D F+ Sbjct: 356 ETTLKRKT-----GARGLRAIMENIMMDTMFT 382 >gi|227486248|ref|ZP_03916564.1| ATP dependent protease ATP-binding subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235659|gb|EEI85674.1| ATP dependent protease ATP-binding subunit [Anaerococcus lactolyticus ATCC 51172] Length = 404 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%) Query: 5 FNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVG 60 F+F P++I + LD Y+IGQ+DAK+ +++A+ N ++R D + EL NIL++G Sbjct: 56 FDFKLSKPKDIKAYLDSYVIGQEDAKKTLSVAVYNHYKRITSNEDDSEVELQKSNILMLG 115 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR PF + T TE GYVG +VE II LV A Sbjct: 116 PTGSGKTLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 54/227 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIRV 234 Query: 292 NTDHILFIASGAFH--------------VSRPAD---------------------LLPEI 316 +T +ILFI GAF + AD L+PE Sbjct: 235 DTTNILFILGGAFEGIGNIINQRQMDKTIGFGADITKREKTDLSMVNTDDLLKFGLIPEF 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L +L++ IL + +++LI QY++L + + L F +D+I +A A + Sbjct: 295 IGRVPIIVSLDALDEEALVRILKEPKNSLIKQYQKLFDLDDVKLSFNDDAISEIAKKAYD 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 + GAR L+T++E +L D+ + E K V++ E + H Sbjct: 355 QKT-----GARGLRTIIENLLLDVMYEIPSRDEIKEVIVTKESIDDH 396 >gi|330808573|ref|YP_004353035.1| ATP-dependent protease ATP-binding subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376681|gb|AEA68031.1| ATP-dependent protease ATP-binding subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400 >gi|269955921|ref|YP_003325710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas cellulosilytica DSM 15894] gi|269304602|gb|ACZ30152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xylanimonas cellulosilytica DSM 15894] Length = 426 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 6/114 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNI 56 LT PREI L++YIIGQ AKRA+A+A+ N ++R +Q P D E+ NI Sbjct: 58 LTELPKPREIFEFLEQYIIGQDAAKRALAVAVYNHYKRIQASEQRPGGDADAIEISKSNI 117 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 118 LLIGPTGTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 56/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKVARKADNPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH-------------------------------VSRPADL-----LPE 315 +T ++LFI +GAF RP DL +PE Sbjct: 241 DTTNVLFIVAGAFAGLEEIVAARARKRGIGFGAPMETVVDDDLFAEVRPEDLQKYGLIPE 300 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV + L++ ILT+ + L+ QY+ + + +G+ L+F++D+++A+AD A+ Sbjct: 301 FIGRLPVIASVSPLDRDALVRILTEPRNALVKQYQRMFQIDGVELEFSDDAVEAIADQAL 360 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 L T GAR L+ +ME VL+ + F + D EK V+ Sbjct: 361 -LRGT----GARGLRAIMEEVLQQVMFDVPSRDDVEKVVI 395 >gi|296270439|ref|YP_003653071.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobispora bispora DSM 43833] gi|296093226|gb|ADG89178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobispora bispora DSM 43833] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 PREI LD Y++GQ AK+A+++A+ N ++R Q RD EL NILL+GPTG G Sbjct: 64 PREIYEFLDSYVVGQDKAKKALSVAVYNHYKRIQSGNRARDDGLELAKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 58/243 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAFH-------------------VSR---------------PADLL---- 313 +T ++LFI GAF V R P DLL Sbjct: 238 DTTNVLFICGGAFAGLEKIIEQRIGKKGIGFNAVLRSREEMDSSDIFAEVMPEDLLKYGM 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+++ ILT ++ L+ QY+ L + + + L+FT+D+++A+AD Sbjct: 298 IPEFVGRLPVITSVHNLDRNALIQILTKPKNALVKQYRRLFELDNVELEFTDDALEAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETD 431 A+ L T GAR L+ +ME VL + + Q+ VVI E V ++ D Sbjct: 358 QAI-LRGT----GARGLRAIMEEVLLSVMYEVPSRQDIARVVITREVVLENVNPTLVPRD 412 Query: 432 MYH 434 Y Sbjct: 413 QYQ 415 >gi|257065889|ref|YP_003152145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii DSM 20548] gi|256797769|gb|ACV28424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii DSM 20548] Length = 404 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ DAK+ +++A+ N ++R + D EL NIL++GPTG GK Sbjct: 62 TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II LV A Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 56/216 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 234 Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316 +T +ILFI GAF V++ A L+PE Sbjct: 235 DTTNILFILGGAFDGIEDIINRRLSEKTIGFGASVTKNASASLKEVNTEDLLKYGLIPEF 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L +L IL + +++ + QY++L + +G+ L F +++++ +A+ A N Sbjct: 295 IGRVPIVVSLDALEVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDEALEKIAEKAYN 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 + GAR L+T+ME +L D+ F S DL+E Sbjct: 355 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE 385 >gi|160936366|ref|ZP_02083735.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC BAA-613] gi|158440649|gb|EDP18387.1| hypothetical protein CLOBOL_01258 [Clostridium bolteae ATCC BAA-613] Length = 416 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ DAK+ +++A+ N ++R ++ ++ NIL+VGPTG GK Sbjct: 45 LKPKEIKAFLDEYVIGQDDAKKVLSVAVYNHYKRVTACQNMDVDVQKSNILMVGPTGSGK 104 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 105 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 148 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 157 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 216 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF P DL Sbjct: 217 IDTTNILFICGGAFDGLEKIVEQRLSAGSIGFNAEVANKNDLNIDELLKKVEPKDLTKFG 276 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L+ L K IL++ ++ L+ QY++L + + + L+FT+++++ +A Sbjct: 277 LIPEFIGRVPVMVSLEQLTKDAMVRILSEPKNALMRQYQKLFELDNVKLEFTQEALEEIA 336 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV+ IGAR L++++E V+ D+ + Sbjct: 337 QLAVDRK-----IGARGLRSILESVMMDLMY 362 >gi|332992308|gb|AEF02363.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas sp. SN2] Length = 425 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + D+ D EL NILL+GPTG GK Sbjct: 68 PSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHDGVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 65/234 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-------------------------------HVSR------PADL-- 312 +T ILFI GAF +S P DL Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKGTGIGFGAAVKSKSENTAQISELFKQVEPQDLVK 299 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L+ LN+ IL + ++ + QY L E + L+F +D++ A Sbjct: 300 YGLIPEFIGRLPVVTSLEELNEEALIQILKEPKNAITKQYSALFDMEDVELEFRDDALHA 359 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 +A A+ + GAR L++++E VL D + SA D+ + VVID +R Sbjct: 360 IAKKAMERKT-----GARGLRSIVEAVLLDTMYELPSAVDVSK--VVIDETVIR 406 >gi|302869358|ref|YP_003837995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micromonospora aurantiaca ATCC 27029] gi|315504167|ref|YP_004083054.1| ATP-dependent clp protease, ATP-binding subunit clpx [Micromonospora sp. L5] gi|302572217|gb|ADL48419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micromonospora aurantiaca ATCC 27029] gi|315410786|gb|ADU08903.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micromonospora sp. L5] Length = 430 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 P EI LD Y++GQ+ AK+A+A+A+ N ++R Q P D EL NILL+GP Sbjct: 64 PMEICQFLDNYVVGQEQAKKALAVAVYNHYKRIQAEAAGAPGSGTDGVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF-----------------------HVSR-----------PADLL---- 313 +T ++LFI GAF VS P D+L Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGSGGTGFGARLRSVSERSTDDIFSQVMPEDMLKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +++SL++S ILT+ + L+ QY+ L + +G+ L+F + +++A+AD Sbjct: 302 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFEQPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386 >gi|225568848|ref|ZP_03777873.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM 15053] gi|225162347|gb|EEG74966.1| hypothetical protein CLOHYLEM_04927 [Clostridium hylemonae DSM 15053] Length = 426 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ +V + G Sbjct: 185 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVANVPPQGGRKHPHQELIQ 244 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF V R P DL Sbjct: 245 IDTTNILFICGGAFEGIEKIVENRIDKKAIGFNADITEKHENDVDRLLNQVLPQDLVKYG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L+K ILT+ S L QY++L++ +G+ L F ED+++ +A Sbjct: 305 IIPELVGRVPVTVALQMLDKEALMRILTEPRSALAKQYQKLLELDGVDLIFDEDALEEIA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + ++ + GAR L+ +ME V+ DI + A SD KT I E V+ Sbjct: 365 ETSLKRKT-----GARGLRAIMENVMMDIMYRAPSDETLKTCRITKEVVK 409 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 73 LKPEEIKDFLDEYVIGQDEAKKVLSVAVYNHYKRIMAQKDLGVELNKSNILMLGPTGCGK 132 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 133 TLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKIIQAA 176 >gi|291456563|ref|ZP_06595953.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium breve DSM 20213] gi|291381840|gb|EFE89358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium breve DSM 20213] Length = 453 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 107/231 (46%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYGS-------- 290 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 205 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 263 Query: 291 ---INTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 264 TVQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADLKDEELLKQVNADDLAE 323 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV L+ L D ILT + LI QY++L +G+ L+FT+ ++ A Sbjct: 324 FGLLPEFIGRLPVTSVLEELTVDDLTEILTQPANALIKQYRKLFAVDGVDLEFTDQAVQA 383 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD A+ IGAR L++++ER L+D F L++ K VV+D V Sbjct: 384 IADTAIKQG-----IGARGLRSIIERTLQDTMFQLPSLEDVKQVVVDKASV 429 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 31/133 (23%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40 P +I L+RY+IGQ++AKRA+++A+ N ++R Sbjct: 65 PTQIFDYLNRYVIGQEEAKRALSVAVYNHYKRVNMELQESAEQLDGANGNVALQSAGRAR 124 Query: 41 --QQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 Q+ L D E+ NILL+GPTGVGKT +++ LAR+ PF+ + T TE GYVG Sbjct: 125 KSQRANDPLSDVEVAKSNILLLGPTGVGKTYLAQSLARVMNVPFVITDATTLTEAGYVGD 184 Query: 98 NVEQIIRDLVDVA 110 +VE +++ L+ A Sbjct: 185 DVETVLQRLLQAA 197 >gi|254451899|ref|ZP_05065336.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Octadecabacter antarcticus 238] gi|198266305|gb|EDY90575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Octadecabacter antarcticus 238] Length = 378 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ+ AKR +++A+ N ++R AD D EL NI+L+GPTG GK Sbjct: 21 TPLEICQVLDDYVIGQRHAKRVLSVAVHNHYKRLNH-ADKSDIELAKSNIMLIGPTGCGK 79 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 80 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 132 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 133 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 192 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILF+ GAF R P DLL Sbjct: 193 DTTNILFVCGGAFAGLDKIIAQRGKGAGMGFGAEVRGPDERGVGEIFSDLEPEDLLKFGL 252 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 253 IPEFVGRLPVIATLEDLDEDALVTILSKPKNALVKQYQRLFELEDAKLTFTDDALVAIAK 312 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F + T VV++ E V Sbjct: 313 RAIERKT-----GARGLRSIMEDILLDTMFELPGMDTVTEVVVNEEAV 355 >gi|56478266|ref|YP_159855.1| ATP-dependent protease ATP-binding subunit ClpX [Aromatoleum aromaticum EbN1] gi|62286505|sp|Q5P160|CLPX_AZOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56314309|emb|CAI08954.1| ATP-dependent Clp protease ATP-binding,subunit clpX [Aromatoleum aromaticum EbN1] Length = 422 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P+EI L++Y+IGQ AKR +++A+ N ++R + + ++E L NILL+GPTG G Sbjct: 66 TPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 59/225 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G Sbjct: 178 QHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFI 237 Query: 290 SINTDHILFIASGAF----------------------------HVSR------PADLL-- 313 I+T +ILFI GAF +VS P DL+ Sbjct: 238 QIDTTNILFICGGAFDGLEKVIRNRTEKIGIGFGAEIKSREGKNVSESFRQVEPEDLIKF 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ IL + ++ L+ QY++L EG+ L+ ++ A+ Sbjct: 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L DI + L+ EK VV Sbjct: 358 ARKAIRRKT-----GARGLRSILESALLDIMYDLPTLEGVEKVVV 397 >gi|320534810|ref|ZP_08035229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 171 str. F0337] gi|320132989|gb|EFW25518.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 171 str. F0337] Length = 440 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P+EI L++Y+IGQ+ AKRA+++A+ N ++R Q+ E L NILL+GPTG Sbjct: 71 PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 130 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+ + + Sbjct: 131 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 186 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S G I Sbjct: 187 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 246 Query: 292 NTDHILFIASGAFH-------------------------------------VSRPADL-- 312 +T +ILFIA+GAF RP DL Sbjct: 247 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTSGTGSQDVFTAPVRPEDLHK 306 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV ++ L + ++T+ ++ L+ QY+ L +G+ L+ T+ +I+A Sbjct: 307 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 366 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A +A+ + GAR L +++E VL F L E VV+DA+ VR Sbjct: 367 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADSVR 413 >gi|296116538|ref|ZP_06835148.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter hansenii ATCC 23769] gi|295976750|gb|EFG83518.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter hansenii ATCC 23769] Length = 419 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI + LD Y+IGQ AK+ +++A+ N ++R D E+ NI+L+GPTG GK Sbjct: 64 TPREICNILDDYVIGQMHAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNIMLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 176 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T ++LFI GAF V P D L Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPDDRRTGAILRDIEPEDLLKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ ILT ++ L+ QY L + E + L F+++++ +A Sbjct: 297 IPEFIGRLPVLATLEDLDEAALIEILTKPKNALVKQYARLFQMEDVKLTFSDEALSTIAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+ ++E +L F L+ Sbjct: 357 RAIARRT-----GARGLRAILESILLTTMFDLPGLK 387 >gi|313114092|ref|ZP_07799644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium cf. prausnitzii KLE1255] gi|310623501|gb|EFQ06904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Faecalibacterium cf. prausnitzii KLE1255] Length = 440 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ +AKR +A+++ N ++R EL N+LL+GP+GVGK Sbjct: 82 LTPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGSDVELQKSNVLLLGPSGVGK 141 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 185 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I V EGVQ+ LL ++EG S+V + G I Sbjct: 195 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 254 Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312 +T +ILFI GAF ++ R D L Sbjct: 255 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSSLKDNSSEAEKALLRKVEPHDLVKFGL 314 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ +L + ++L+ QYKEL+ + + L+FT++++ A+A Sbjct: 315 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELNFTDEALHAIAR 374 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++VME +L I + Sbjct: 375 KTIERKT-----GARGLRSVMESILLPIMY 399 >gi|326771853|ref|ZP_08231138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces viscosus C505] gi|326637986|gb|EGE38887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces viscosus C505] Length = 433 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P+EI L++Y+IGQ+ AKRA+++A+ N ++R Q+ E L NILL+GPTG Sbjct: 64 PQEIFDFLNQYVIGQEAAKRAMSVAVYNHYKRVQVKERSVAEGDGLELGKSNILLLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+ + + Sbjct: 124 TGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 61/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S G I Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFIA+GAF RP DL Sbjct: 240 DTTNILFIAAGAFAGIEEIVRQRQRKESGAQMVGFGAQLTGSTGSQDVFTSPVRPEDLHK 299 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV ++ L + ++T+ ++ L+ QY+ L +G+ L+ T+ +I+A Sbjct: 300 FGLIPEFIGRLPVIATVQDLGVRELVRVMTEPKNALVSQYQYLFSLDGVELELTDAAIEA 359 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A +A+ + GAR L +++E VL F L E VV+DA+ VR Sbjct: 360 VASLALERKT-----GARGLTSIVEEVLGQAMFEVPSLPEVGRVVVDADAVR 406 >gi|254705082|ref|ZP_05166910.1| ATP-dependent protease ATP-binding subunit HslU [Brucella suis bv. 3 str. 686] Length = 77 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/77 (58%), Positives = 60/77 (77%) Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 +F++D+IDALAD+AV+LN+TV +IGARRLQTVME+VL++ISF+A D T +IDA YV+ Sbjct: 1 EFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVK 60 Query: 421 LHIGDFPSETDMYHFIL 437 IG TD+ FIL Sbjct: 61 EKIGGLAKNTDLSRFIL 77 >gi|227500203|ref|ZP_03930272.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius ATCC 35098] gi|227217725|gb|EEI83029.1| ATP dependent protease ATP-binding subunit [Anaerococcus tetradius ATCC 35098] Length = 404 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ DAK+ +++A+ N ++R D EL NIL++GPTG GK Sbjct: 62 TPKEIKEFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSEIELQKSNILMLGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II LV A Sbjct: 122 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 234 Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316 +T +ILFI GAF VS+ A L+PE Sbjct: 235 DTTNILFILGGAFDGIEDIINRRLSEKTIGFGASVSKNAKASLKEVNTEDLLKYGLIPEF 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L +L IL + +++ + QY++L + +G+ L F +D++ +A A + Sbjct: 295 IGRVPIIVSLDALEIDSLVQILKEPKNSFVKQYQKLFELDGVKLTFEDDALYQIAKKAFD 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L+T+ME +L D+ F S DL+E V++ E V Sbjct: 355 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE--VIVTKESV 393 >gi|254421934|ref|ZP_05035652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. PCC 7335] gi|196189423|gb|EDX84387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. PCC 7335] Length = 443 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 PREI S LD ++IGQ +AK+ +++A+ N ++R + A+ + EL NILL+GPTG Sbjct: 83 PREIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSVQAEGEEAEDDIELQKSNILLIGPTG 142 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA + PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 143 CGKTLLAQTLAAILEVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 198 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 199 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 258 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILF+ GAF P D+ Sbjct: 259 DTRNILFVCGGAFVGLDKIVEQRIGKKSMGFVQPGREINSDAKSSLTLQDLEPDDIVKFG 318 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P ++ L++ ILT+ ++ L+ Q+K+LM+ + + L+F D+I A+A Sbjct: 319 IIPEFIGRIPAVSIVEPLDEKTLVAILTEPKNALVKQFKKLMRMDDVELEFEPDAIRAIA 378 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A N + GAR L++++E ++ D+ + + KT I E V Sbjct: 379 KEAFNRKT-----GARALRSIIEEIMLDVMYELPSRDDVKTCTITREMV 422 >gi|57505536|ref|ZP_00371463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter upsaliensis RM3195] gi|57016083|gb|EAL52870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter upsaliensis RM3195] Length = 409 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 N +P+ + + LDRY+IGQ AK+ ++ + N ++R ADL D EL NILLVGPT Sbjct: 62 NITPKSLKAYLDRYVIGQDRAKKIFSVGVYNHYKRL-FRADLEDDDTELFKSNILLVGPT 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LAR P + T TE GYVG +VE I+ L+ A N + +++ Sbjct: 121 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANNDIERAQK 177 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 53/223 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 178 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 237 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 238 DTSNILFVCGGAFDGLEQILKRKLGDKVVGFFDNAKEENKALLEKIEPDDLVHFGLIPEL 297 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 298 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 357 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L++++E ++ D+ F + ++ +VI E V Sbjct: 358 RKT-----GARGLRSIIEEMMVDLMFELHEYKDYDIVITKEVV 395 >gi|313158087|gb|EFR57492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alistipes sp. HGB5] Length = 425 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 1/120 (0%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 +K+ P +I LD+Y+IGQ DAKR +A+A+ N ++R P + E+ NI+LV Sbjct: 70 LKMEELLKPAQIKDFLDQYVIGQDDAKRYMAVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 129 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++R +A+L PF V+ T TE GYVG +VE I+ L+ VA V ++ R Sbjct: 130 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 189 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 55/229 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ V+ K+ + Sbjct: 190 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 249 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF P DL +P Sbjct: 250 DTRNILFICGGAFDGVEKKIAQRLNTRAMGYGRLRADRIDRNNLMQYITPQDLKSFGLIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV +++ L++ R ILT+ ++ ++ QYK L + + + L F + +D + D A Sbjct: 310 ELVGRLPVLTYMQPLSREALRSILTEPKNAIVKQYKRLFELDNVKLTFDDAVLDYIVDKA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 V +GAR L+++ E ++ D F + V+ Y + I Sbjct: 370 VEFK-----LGARGLRSICEAIMMDTMFDLPSTDTRKFVVTLPYAKKKI 413 >gi|328950942|ref|YP_004368277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus hydrothermalis DSM 14884] gi|328451266|gb|AEB12167.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinithermus hydrothermalis DSM 14884] Length = 407 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+ I + LD+Y+IGQ++AK+A+++A+ N ++R Q L DE+ NILL+GPTG G Sbjct: 63 PQAIKAHLDQYVIGQEEAKKALSVAVYNHYKRLMYAQQKDGLVDEIQKSNILLIGPTGTG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++ LARL PF + T TE GYVG +VE ++ L+ A Sbjct: 123 KTLLAETLARLLDVPFAIADATTLTEAGYVGEDVENVVLRLLQAA 167 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 50/220 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 177 GIIYIDEIDKIARKSEGPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIPV 236 Query: 292 NTDHILFIASGAFH------VSR---------------------PADL-----LPEIQGR 319 NT +ILFI GAF SR P DL +PE GR Sbjct: 237 NTRNILFILGGAFEGLEAIVKSRVDESPIGFAARKAKDEKPEVIPEDLVKFGLIPEFVGR 296 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV V L L++ ILT+ ++ LI QY+EL + EG+ L+FTE+++ +A A+ + Sbjct: 297 VPVIVQLDPLDEEALVRILTEPKNALIKQYQELFRMEGVRLEFTEEALREIARRAMKRGT 356 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 GAR L+ V+E+ + ++ + A K +V D E++ Sbjct: 357 -----GARGLRAVIEKAMVELMYEAPGSGVKVIVFDREHL 391 >gi|149916366|ref|ZP_01904886.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. AzwK-3b] gi|149809820|gb|EDM69672.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. AzwK-3b] Length = 420 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++I + LD Y+IGQ AKR +++A+ N ++R EL NILL+GPTG GKT Sbjct: 65 TPQDICAVLDDYVIGQSMAKRVLSVAVHNHYKRLNHSGKNDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 237 DTTNILFICGGAFAGLDRIISQRGKGSAMGFGADVRDVDARNTGEVFKDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ LI QY+ L + E L FT+D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALIKQYQRLFELENAQLTFTDDALTAIAR 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L + F Sbjct: 357 RAIARKT-----GARGLRSILEDILLNTMF 381 >gi|312143236|ref|YP_003994682.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium sp. 'sapolanicus'] gi|311903887|gb|ADQ14328.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halanaerobium sp. 'sapolanicus'] Length = 421 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 71/111 (63%), Gaps = 1/111 (0%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59 +KL+ P+EI LD+Y+IGQ+ AK+++++A+ N ++R + D EL NI++V Sbjct: 57 LKLSEIPKPKEIKEILDQYVIGQERAKKSLSVAVYNHYKRVNTNMVVDDVELQKSNIMMV 116 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 117 GPTGCGKTLMAQTLARILDVPFAITDATSLTEAGYVGEDVENILLKLIQAA 167 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFIA GAF H+ +P DLL Sbjct: 237 DTTDILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTKNESKNIGEILKHI-QPQDLLHY 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV+V L L D I+ + + L+ QY++ + I L+FT+D+++A+ Sbjct: 296 GLIPEFIGRMPVQVTLDELEVEDMVRIMQEPRNALVKQYQKFFLMDDIELEFTDDALEAI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ A++ N+ GAR L++V+E + DI + E K +I E + Sbjct: 356 ANQALSRNT-----GARGLRSVVENTVLDIMYDLPSRPEIKKCIITKEVIE 401 >gi|295100805|emb|CBK98350.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Faecalibacterium prausnitzii L2-6] Length = 443 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P EI LD+Y+IGQ +AKR +A+++ N ++R EL N+LL+GP+GVGKT Sbjct: 86 TPAEIKEGLDQYVIGQDEAKRVLAVSVYNHYKRILSGKGADVELQKSNVLLLGPSGVGKT 145 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 146 LLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 188 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I V EGVQ+ LL ++EG S+V + G I Sbjct: 198 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 257 Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312 +T +ILFI GAF ++ R D L Sbjct: 258 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSALKDNSSEAEKALLRKVEPHDLVKFGL 317 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ +L + ++L+ QYKEL+ + + LD T++++ A+A Sbjct: 318 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLSMDNVELDITDEALHAIAR 377 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++VME +L I + Sbjct: 378 KTIERKT-----GARGLRSVMENILMPIMY 402 >gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding subunit ClpX [Herminiimonas arsenicoxydans] gi|166214778|sp|A4G5X0|CLPX_HERAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|133738860|emb|CAL61907.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Herminiimonas arsenicoxydans] Length = 422 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+E+ LD+Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQELCELLDQYVIGQNSAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T +I+FI GAF + P DL+ Sbjct: 240 DTTNIMFICGGAFDGLAKIISERSEKSGIGFSATVKSREERSASQVMLDTEPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L+ L++ IL + ++ LI QY +L++ EG L+ ++ A+A Sbjct: 300 IPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + + Q VVID Sbjct: 360 KAIARKT-----GARGLRSILEHALLDVMYELPNEQNVSKVVID 398 >gi|254282549|ref|ZP_04957517.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium NOR51-B] gi|219678752|gb|EED35101.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium NOR51-B] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD+Y+IGQQ AKR +++A+ N ++R + P D EL NILLVGPTG G Sbjct: 68 PHEIKQILDQYVIGQQRAKRVLSVAVYNHYKRLRYAPKSGGDDVELSKSNILLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 169 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 58/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFHVS-----------------------------------RPADL---- 312 +T +ILFI GAF P DL Sbjct: 242 DTSNILFICGGAFAGLDKVIKNRSEKGGIGFAAEVKSKDETRKFGETLSDLEPEDLVQYG 301 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+++ ILT+ + L QY ++ EG+ +DF ED + A+A Sbjct: 302 LIPEFVGRLPVIATLEELDEAALIQILTEPRNALTKQYAKMFDMEGVEIDFREDGLRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 + A+ + GAR L++++E VL D ++ Sbjct: 362 EKAMERKT-----GARGLRSILEGVLLDSMYN 388 >gi|118590046|ref|ZP_01547450.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] gi|118437543|gb|EAV44180.1| ATP-dependent protease ATP-binding subunit [Stappia aggregata IAM 12614] Length = 421 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 65 TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHASKNNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 177 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLDKIISDRGTQTSIGFQAKVHAPEDRRIGELFAELEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 298 IPEFVGRLPVIATLEDLDEEALVTILTEPKNALVKQYQRLFEMEQVELSFHEEALKAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L++++E +L D + L+ K VVI E V+ Sbjct: 358 RAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVVK 401 >gi|332085738|gb|EGI90902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella dysenteriae 155-74] Length = 424 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELSKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|313890517|ref|ZP_07824145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pseudoporcinus SPIN 20026] gi|313121034|gb|EFR44145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pseudoporcinus SPIN 20026] Length = 417 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E++ L++Y++GQ AKRA+A+A+ N ++R A+ RD EL NIL++GPTG Sbjct: 72 PKELLETLNQYVVGQDRAKRALAVAVYNHYKRVSF-AESRDDEEVELQKSNILMIGPTGS 130 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 131 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 185 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 186 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 245 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 246 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISEDIQTFGLIP 305 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN D ILT+ ++ L+ QY+ L+ +G+ L F ++++DA+A+ A Sbjct: 306 EFIGRLPVVAALEQLNTKDLVKILTEPKNALVKQYQTLLSYDGVELTFDQEALDAIAEKA 365 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 366 IARKT-----GARGLRSIIEETMLDLMF 388 >gi|264677388|ref|YP_003277294.1| ATP-dependent Clp protease ATP-binding subunit [Comamonas testosteroni CNB-2] gi|262207900|gb|ACY31998.1| ATP-dependent Clp protease, ATP-binding subunit [Comamonas testosteroni CNB-2] Length = 420 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + A D EL NILL+GPTG Sbjct: 66 TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFLQI 240 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI SGAF +S P DL+ Sbjct: 241 DTTNILFICSGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEMFLEIEPEDLIKFGI 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 301 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L F Sbjct: 361 KALARKT-----GARGLRSIVEQALISTMF 385 >gi|118594830|ref|ZP_01552177.1| ATP-dependent protease ATP-binding subunit [Methylophilales bacterium HTCC2181] gi|118440608|gb|EAV47235.1| ATP-dependent protease ATP-binding subunit [Methylophilales bacterium HTCC2181] Length = 425 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 71/106 (66%), Gaps = 6/106 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-----PKNILLVGP 61 P+E+ +LD ++IGQ++AK+++A+A+ N ++R Q+ +D +DEL NIL +GP Sbjct: 65 LKPKELFLKLDEHVIGQEEAKKSLAVAVYNHYKRLQV-SDHKDELSDVKISKSNILFIGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT +++ LA L PF+ + T TE GYVG +VE I++ L+ Sbjct: 124 TGSGKTLLAQTLADLLQVPFVMADATTLTEAGYVGEDVENIMQKLL 169 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 63/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ I Sbjct: 182 GIVYIDEVDKISRKTDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQI 241 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T +ILFI GAF V +D Sbjct: 242 DTTNILFICGGAFDGLEKIIKERTEKNSIGFGAEVQGKSDVKAFGDVVKNVQSEDLIRFG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+SL+K ILT+ ++ L Q+K+L + EG+ LDF ++++A+A Sbjct: 302 LIPEFIGRLPVITTLESLDKEALIRILTEPKNALTKQFKKLFRIEGVELDFRPEALEAIA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + A+ S GAR L++++E L++ F + DL++ VVID + Sbjct: 362 EKALERKS-----GARGLRSILEIALKETMFELPTTKDLEK--VVIDGNVI 405 >gi|221068423|ref|ZP_03544528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas testosteroni KF-1] gi|299533086|ref|ZP_07046472.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas testosteroni S44] gi|220713446|gb|EED68814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Comamonas testosteroni KF-1] gi|298718971|gb|EFI59942.1| ATP-dependent protease ATP-binding subunit ClpX [Comamonas testosteroni S44] Length = 420 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + A D EL NILL+GPTG Sbjct: 66 TPAEIKANLDNYVIGQEQAKRTLAVAVYNHYKRLNHKDKAGKDDVELSKSNILLIGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAQTLARQLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASIPPQGGRKHPNQDFLQI 240 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI SGAF +S P DL+ Sbjct: 241 DTTNILFICSGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEMFLEIEPEDLIKFGI 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 301 IPELVGRMPVVTALAELSEEALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L F Sbjct: 361 KALARKT-----GARGLRSIVEQALISTMF 385 >gi|89895950|ref|YP_519437.1| ATP-dependent protease ATP-binding subunit [Desulfitobacterium hafniense Y51] gi|219670383|ref|YP_002460818.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfitobacterium hafniense DCB-2] gi|122997224|sp|Q24SJ9|CLPX_DESHY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763844|sp|B8FVI0|CLPX_DESHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|89335398|dbj|BAE84993.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540643|gb|ACL22382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfitobacterium hafniense DCB-2] Length = 421 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD+Y+IGQ +AK+A+A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 64 PKEIRAILDQYVIGQDEAKKALAVAVYNHYKRINLGMKIDDVELQKSNIVMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLASTLAKVLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADLL---- 313 +T +ILFI GAF + + PADLL Sbjct: 236 DTTNILFIVGGAFDGIDKIIQNRIGKKVMGFGAEIKKKSEQNIGETLRELLPADLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT+ ++ L+ QY++L++ +G+ L+F E+++ A+A+ Sbjct: 296 IPEFVGRLPVMVKLDALDEEALVRILTEPKNALVKQYEKLLELDGVALEFKEEALKAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E +++++ + Sbjct: 356 EAIRRNT-----GARGLRAIVEEIMQNVMY 380 >gi|73662399|ref|YP_301180.1| ATP-dependent protease ATP-binding subunit ClpX [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642789|sp|Q49YA6|CLPX_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72494914|dbj|BAE18235.1| ATP-dependent Clp protease ATP-binding subunit clpX [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 420 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL-PADLRDELMPKNILLVGPTGVG 65 +P+EI+ +L+ Y+IGQ+ AK+++A+A+ N ++R QQL P + EL N+ L+GPTG G Sbjct: 63 TPKEIMDKLNDYVIGQEKAKKSLAVAVYNHYKRVQQLGPNEDEVELQKSNVALIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAA 167 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 58/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILF+ GAF RP DL +P Sbjct: 237 DTTNILFVLGGAFDGIDEVIKRRLGEKVIGFSSSEASKYDEDAILEQIRPEDLQSYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +L++L+ + ILT ++ L+ QY ++++ + + L+FT++++ A+++ A Sbjct: 297 EFIGRVPIVANLETLDVDALKNILTQPKNALVKQYTKMLELDDVTLEFTDEALSAISNKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYV 419 + + GAR L++++E L DI + +SD K VVI AE + Sbjct: 357 IKRKT-----GARGLRSIIEEALIDIMYDVPSSDGVVK-VVITAETI 397 >gi|28870880|ref|NP_793499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato str. DC3000] gi|213968835|ref|ZP_03396976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato T1] gi|301384119|ref|ZP_07232537.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato Max13] gi|302059518|ref|ZP_07251059.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato K40] gi|302135031|ref|ZP_07261021.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38257469|sp|Q87YR7|CLPX_PSESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28854129|gb|AAO57194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato str. DC3000] gi|213926438|gb|EEB59992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas syringae pv. tomato T1] gi|331019230|gb|EGH99286.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|271968523|ref|YP_003342719.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] gi|270511698|gb|ACZ89976.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] Length = 426 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 PREI LD Y+IGQ AK+A+++A+ N ++R Q RD EL NILL+GPTG G Sbjct: 64 PREIYEFLDAYVIGQDQAKKALSVAVYNHYKRVQSGERGRDDGIELSKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 178 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI GAF V R P DLL Sbjct: 238 DTTNVLFICGGAFAGLEKIIESRVGRKGIGFNAIIHSKEDVDSSDIFGDVMPEDLLKFGM 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ ILT+ + L+ QY+ L + + + L+FT+D+++A+AD Sbjct: 298 IPEFVGRLPVITSVHNLDRDALIQILTEPRNALVKQYRRLFELDNVELEFTDDALEAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ ++E VL + + Q+ VVI E V H+ Sbjct: 358 QAI-LRGT----GARGLRAILEEVLLSVMYEVPSRQDVARVVITRESVLEHV 404 >gi|227497468|ref|ZP_03927697.1| ATP-dependent protease ATP-binding subunit [Actinomyces urogenitalis DSM 15434] gi|226833042|gb|EEH65425.1| ATP-dependent protease ATP-binding subunit [Actinomyces urogenitalis DSM 15434] Length = 430 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 13/120 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 P+EI L+ Y+IGQ+ AKRA+++A+ N ++R Q+ R+ EL NILL+ Sbjct: 64 PQEIFDFLNEYVIGQEAAKRAMSVAVYNHYKRVQV----RERAVAEGDGLELGKSNILLL 119 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++R LARL PF V+ T TE GYVG +VE I+ L+ A V+ + + Sbjct: 120 GPTGTGKTHLARTLARLLDVPFAIVDATALTEAGYVGEDVENILLKLIQAADGDVKRAEK 179 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S G I Sbjct: 180 GIIYIDEIDKIGRKAENPSITRDVSGEGVQQALLKIIEGTTASVPPGGGRKHPHQEFLEI 239 Query: 292 NTDHILFIASGAFH-----------------------------------VSRPADL---- 312 +T +ILFIA+GAF RP DL Sbjct: 240 DTTNILFIAAGAFAGIEDIVRQRQRKESGATTLGFGGTLSEETQDVFTTKVRPEDLHKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV ++ L + ++T+ ++ L+ QY+ L +G+ L T+++I+A+A Sbjct: 300 LIPEFIGRLPVIATVQDLGVKELVRVMTEPKNALVSQYEYLFSLDGVELVMTDEAIEAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 ++A+ + GAR L +++E VL D F + E VV+DA+ VR Sbjct: 360 EMALARKT-----GARGLTSIVEEVLGDAMFEVPSMPEVGRVVVDADAVR 404 >gi|66044993|ref|YP_234834.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. syringae B728a] gi|237803595|ref|ZP_04591180.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. oryzae str. 1_6] gi|257483814|ref|ZP_05637855.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627505|ref|ZP_06460459.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649944|ref|ZP_06481287.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. aesculi str. 2250] gi|289679416|ref|ZP_06500306.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. syringae FF5] gi|298486264|ref|ZP_07004327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|81308383|sp|Q4ZVM6|CLPX_PSEU2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|63255700|gb|AAY36796.1| ClpX, ATPase regulatory subunit [Pseudomonas syringae pv. syringae B728a] gi|298159271|gb|EFI00329.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325362|gb|EFW81429.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. glycinea str. B076] gi|320327653|gb|EFW83661.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. glycinea str. race 4] gi|330868374|gb|EGH03083.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878773|gb|EGH12922.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330882124|gb|EGH16273.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. glycinea str. race 4] gi|330889996|gb|EGH22657.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. mori str. 301020] gi|330939707|gb|EGH43002.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. pisi str. 1704B] gi|330959388|gb|EGH59648.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. maculicola str. ES4326] gi|330963319|gb|EGH63579.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. actinidiae str. M302091] gi|330975102|gb|EGH75168.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985640|gb|EGH83743.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012680|gb|EGH92736.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331025577|gb|EGI05633.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. oryzae str. 1_6] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|86159007|ref|YP_465792.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] gi|85775518|gb|ABC82355.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C] Length = 368 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 +PREI + L +Y+IGQ+ AKRA+A+A + +R L R+ L N+LL+GPTG G Sbjct: 14 LTPREIHARLSQYVIGQEPAKRALAVAAYSHVKRVALRRASREVALQKSNVLLIGPTGCG 73 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LAR+ PF + T+FTE GY G++VE +I +L+ A + + E++R Sbjct: 74 KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEEAQR 127 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 94/224 (41%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289 GIVF+DE DKI R + G G + EGVQ+ LL L+EG V G Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187 Query: 290 --SINTDHILFIASGAFH--VSRPAD-----------------------------LLPEI 316 ++T ILF+ +G F S D +L E Sbjct: 188 TVPVDTTDILFVCAGTFSDLFSYGGDGRSLGFGAARPGAAAPRRRIRPRDLVEYGMLAEF 247 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR PV V L L +LT ++ Q + L+ +G+ LD T+ ++ L A Sbjct: 248 LGRLPVVVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALRELVAFARE 307 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L+ V+E VL ++ F A + V++DA +VR Sbjct: 308 RGA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAPWVR 346 >gi|71734283|ref|YP_273936.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. phaseolicola 1448A] gi|123637276|sp|Q48KY9|CLPX_PSE14 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71554836|gb|AAZ34047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas syringae pv. phaseolicola 1448A] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 67/236 (28%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------- 286 D QM GIV++DE DKI + I VS EGVQ+ LL L+EG+ S Sbjct: 176 DKAQM----GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRK 231 Query: 287 ----KYGSINTDHILFIASGAF-----------------------------------HVS 307 ++ ++T +ILFI GAF Sbjct: 232 HPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREV 291 Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 P DL +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F Sbjct: 292 EPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEF 351 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 D++ ++A A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 352 RTDALKSVARRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|330952798|gb|EGH53058.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae Cit 7] Length = 427 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|258592922|emb|CBE69231.1| ATP-dependent Clp protease ATP-binding subunit clpX [NC10 bacterium 'Dutch sediment'] Length = 415 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD+Y+IGQ AK+++A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 64 PSEIKSILDQYVIGQDRAKKSLAVAVHNHYKRVNARMTFDDVELTKSNILLIGPTGCGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE II L+ VA Sbjct: 124 LLAQTLAKILDVPFTIADATTLTEAGYVGEDVENIILRLLQVA 166 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEYLQV 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV +P DLL Sbjct: 236 DTTNILFICGGAFVGLEKAIEHRTGQKSMGFGAEIQARRGRRISELLAHV-QPEDLLRYG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV + L++ IL + ++ L+ QY+ E + L FT+D+I A+A Sbjct: 295 LIPELVGRLPVMAVVHELDEKALVRILVEPKNALLRQYQRFFDFEHVKLTFTDDAISAVA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ DI + Sbjct: 355 QEAAKRQT-----GARGLRAILEEIMLDIMY 380 >gi|83858430|ref|ZP_00951952.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] gi|83853253|gb|EAP91105.1| ATP-dependent protease ATP-binding subunit [Oceanicaulis alexandrii HTCC2633] Length = 424 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+EI L Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 SPQEIFQVLQDYVIGQAKAKRVLSVAVHNHYKRLNHAGQNGDVELSKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQAADYNVERAQR 177 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312 +T +ILFI GAF V AD L Sbjct: 238 DTTNILFIVGGAFAGLEGIISQRGKGSAVGFGADVRDPDARRQGEVLAEVEPDDLTKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ + ILT+ ++ L+ QY+ L + EG+ L FTED++ A+A+ Sbjct: 298 IPEFVGRLPVIATLEDLDVAALVQILTEPKNALVKQYQRLFEMEGVGLSFTEDALTAIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+N + GAR L+++ME +L D F L Sbjct: 358 KAINRKT-----GARGLRSIMEGILLDTMFDLPSL 387 >gi|330469648|ref|YP_004407391.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora maris AB-18-032] gi|328812619|gb|AEB46791.1| ATP-dependent protease ATP-binding subunit ClpX [Verrucosispora maris AB-18-032] Length = 431 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 P EI LD Y++GQ+ AK+A+A+A+ N ++R Q P D EL NILL+GP Sbjct: 64 PMEICQFLDTYVVGQEQAKKALAVAVYNHYKRIQAEAANAPGAGNDGVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH-----------------------VSR-----------PADLL---- 313 +T ++LFI GAF VS P D+L Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRAVSERSTDDIFGQVMPEDMLKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV ++SL++S ILT+ + L+ QY+ L + +G+ L+F +++A+AD Sbjct: 302 IPEFIGRLPVITSVRSLDRSALVRILTEPRNALVRQYQRLFELDGVELEFERPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386 >gi|85716434|ref|ZP_01047406.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] gi|85696791|gb|EAQ34677.1| ATP-dependent protease ATP-binding subunit [Nitrobacter sp. Nb-311A] Length = 400 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 41 TPKEICKVLDDYVIGQGHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGK 100 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 101 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 153 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 154 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 213 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 214 DTTNILFICGGAFSGLEKIISARGRTTSIGFAAQVLAPEDRRTGEIFRHV-EPEDLLKYG 272 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++ + ILTD ++ L+ QY+ L + E I L F ++++ A+A Sbjct: 273 LIPEFVGRLPVVATLEDLDEASLKKILTDPKNALVKQYQRLFEMENIELTFADEALGAVA 332 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + F L+ + VVI E V Sbjct: 333 RKAIERKT-----GARGLRSILESILLETMFDLPGLEGVEEVVISREVV 376 >gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas cervicalis ATCC 49957] gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas cervicalis ATCC 49957] Length = 418 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ+ AK+ +++A+ N ++R + E+ NI+LVGPTG GK Sbjct: 63 TPREICKVLDDYVIGQEHAKKVLSVAVHNHYKRLAHGGKTGEVEIAKSNIMLVGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 123 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 175 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 235 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTSNILFICGGAFAGLEKIIAGRGKGSGIGYGAEVRGPDERRTGQILREVEPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L + E L FT+D++ ++A+ Sbjct: 296 IPEFIGRLPVVATLDDLDEKALVEILTKPKNALVKQYQRLFEMEATKLTFTDDALKSVAN 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+++ME +L F L Sbjct: 356 RAIQRKT-----GARGLRSIMEGILLGTMFDLPGL 385 >gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio metschnikovii CIP 69.14] gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PREI LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF---------HVSR---------------------------PADL--- 312 +T ILFI GAF V++ P DL Sbjct: 241 DTSKILFICGGAFSGLDKVIEQRVAKGTGIGFGAEVRSKDNSKSLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEKALIQILCEPKNALTKQYAALFELEKAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + + + VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILENVLLETMYELPSMADVEKVVID 401 >gi|189462224|ref|ZP_03011009.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136] gi|189431077|gb|EDV00062.1| hypothetical protein BACCOP_02907 [Bacteroides coprocola DSM 17136] Length = 414 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD+Y+IGQ DAKR +++A+ N ++R P+ D E+ NI++VG TG GKT Sbjct: 67 PKDIKDFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPSSKDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ R Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 178 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 239 NTKNILFICGGAFDGIERKIAQRLNTNVVGYGAAKEKVKIDRANLMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L+F + D + D Sbjct: 299 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFDYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + +T VI +Y + Sbjct: 359 AVEYK-----LGARGLRSIVETIVMDAMFEVPSHKVETFVITLDYAK 400 >gi|325479719|gb|EGC82809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus prevotii ACS-065-V-Col13] Length = 402 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ DAK+ +++A+ N ++R + D EL NIL++GPTG GK Sbjct: 60 TPKEIKDFLDSYVIGQDDAKKTLSVAVYNHYKRINSNEEDSDIELQKSNILMLGPTGSGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II LV A Sbjct: 120 TLLAQTLARKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 163 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 56/216 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 173 GIIYVDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTEANVPPQGGRKHPSQEYIQV 232 Query: 292 NTDHILFIASGAF--------------------HVSRPAD---------------LLPEI 316 +T +ILFI GAF +V++ L+PE Sbjct: 233 DTTNILFILGGAFDGIEDIIGRRLSEKTIGFGANVNKQEKASLKEVSTEDLLKFGLIPEF 292 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L +L+ IL + +++ + QY++L + +G+ L F +D++ +A + + Sbjct: 293 IGRVPIIVSLDALDVDSLVKILKEPKNSFVRQYQKLFELDGVKLTFEDDALYEIAKKSYD 352 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 + GAR L+T+ME +L D+ F S DL+E Sbjct: 353 QKT-----GARGLRTIMENLLLDLMFEIPSIDDLEE 383 >gi|312865011|ref|ZP_07725239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus downei F0415] gi|311099122|gb|EFQ57338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus downei F0415] Length = 400 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ LD Y+IGQ AKRA+A+A+ N ++R +DE L NIL++GPTG G Sbjct: 55 PKELLQILDDYVIGQDRAKRALAVAVYNHYKRISFVESAQDEDVDLQKSNILMIGPTGSG 114 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 115 KTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADFNIERAER 168 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 169 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 228 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 229 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNNKSIDDDASYMQQIISEDIQKFGLIP 288 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ ++ L+ QYK L+ +G+ L+F +++++A+A A Sbjct: 289 EFIGRLPVLAALEQLTVEDLVRILTEPKNALVKQYKTLLSYDGVDLEFDQEALEAIAQKA 348 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F ++ T V Sbjct: 349 IERKT-----GARGLRSIIEETMMDIMFEVPSQEDVTSV 382 >gi|307729639|ref|YP_003906863.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1003] gi|323526046|ref|YP_004228199.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1001] gi|307584174|gb|ADN57572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1003] gi|323383048|gb|ADX55139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderia sp. CCGE1001] Length = 423 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + L EL NILL+GPTG GK Sbjct: 68 GPQEIREILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDEIELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LARL PF+ + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLL 168 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 241 DTTNILFICGGAFDGLEKVIVDRTEKTGIGFGASVKSKQDRDAGEVLREVEPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L+++ IL + ++ L+ QY +L E + L+ ++ A+A Sbjct: 301 IPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYHKLFNMERVELEIRPAALQAVAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E+ L D+ + ++ + VI Sbjct: 361 KAIRRKT-----GARGLRSILEQALLDVMYDLPQMKGVSKVI 397 >gi|284990115|ref|YP_003408669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geodermatophilus obscurus DSM 43160] gi|284063360|gb|ADB74298.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geodermatophilus obscurus DSM 43160] Length = 423 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRD---ELMPKNILLVGPTGV 64 P+EI L++Y+IGQ AKRA+++A+ N ++R Q A RD EL NILL+GPTG Sbjct: 64 PKEIHDFLEQYVIGQDKAKRALSVAVYNHYKRVQAGGAGSRDDSVELAKSNILLMGPTGC 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 179 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAFHVSR----------------------------------PADLL---- 313 +T ++LFI GAF P DLL Sbjct: 239 DTTNVLFIVGGAFAGLEKIIEQRAGKQGIGFGAEVRGKKEIEEANAFAEVMPEDLLKFGM 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV ++ L++ ILT+ ++ L+ QY+ L + +G+ L+FT+D+++++AD Sbjct: 299 IPEFIGRLPVITSVEKLDRDALMNILTEPKNALVRQYRRLFELDGVELEFTDDALESIAD 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + + +VVI E V H+ Sbjct: 359 QAI-LRGT----GARGLRAIMEEVLQSVMYDVPSRDDVASVVITREVVLEHV 405 >gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas mossii DSM 22836] Length = 411 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAV 234 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIERKIAQRLNTMVVGYASSKNNAQVDRNNLLQYVAPQDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L +L++S R ILT+ ++++I QY +L K +G+ L F +D + + D Sbjct: 295 PEIIGRLPILTYLDALDRSALRRILTEPKNSIIKQYVKLFKMDGVDLTFEDDVYEYIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 AV +GAR L++++E ++ D F+ ++ + + EY Sbjct: 355 AVEYK-----LGARGLRSIVETIMMDAMFNIPSTKQAQLHVTKEY 394 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 66/102 (64%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P++I LD YIIGQ++AKR +++A+ N ++R + E+ NI++VGPTG GKT Sbjct: 64 PKKIKEYLDGYIIGQENAKRYLSVAVYNHYKRILQGKEDDIEIEKSNIIMVGPTGTGKTL 123 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T TE GYVG ++E I+ L+ + Sbjct: 124 LARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAS 165 >gi|302187982|ref|ZP_07264655.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas syringae pv. syringae 642] Length = 427 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKNDDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 400 >gi|158522704|ref|YP_001530574.1| ATP-dependent protease ATP-binding subunit [Desulfococcus oleovorans Hxd3] gi|238686897|sp|A8ZXB8|CLPX_DESOH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158511530|gb|ABW68497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfococcus oleovorans Hxd3] Length = 417 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 +P+EI + LD Y+I Q+ AK+A+A+A+ N ++R D E+ NILL+GPTG G Sbjct: 61 LAPKEIKTLLDDYVIEQERAKKALAVAVYNHYKRLDTSVKTSDVEIQKSNILLIGPTGCG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR PF + T TE GYVG +VE II L+ A V +++R Sbjct: 121 KTLLAQTLARFLNVPFTIADATTLTEAGYVGEDVENIILSLLQNADYDVEKAQR 174 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI R I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 175 GIVYVDEIDKIAQRSDNPSITRDVSGEGVQQALLKIMEGTLASVPPKGGRKHPQQDFVKV 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI G F + P DL+ Sbjct: 235 DTTNILFICGGTFTGLDKLIERRVGEKTIGFGSKVTGEKDKNYNQSLQLVEPQDLIRFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT+ ++ LI Q+++L + EG+ L FT+ ++ +A Sbjct: 295 IPEFLGRLPIIVTLDELSEESLVKILTEPKNALIKQFQKLFEIEGVNLRFTDSALATVAS 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDAEYVR 420 +A+ S GAR L++++E + D+ + QE K VI E ++ Sbjct: 355 LAMKRKS-----GARGLRSILESCMLDLMYEIPS-QEGVKECVIGEEVIK 398 >gi|77459918|ref|YP_349425.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas fluorescens Pf0-1] gi|123730994|sp|Q3K9X0|CLPX_PSEPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|77383921|gb|ABA75434.1| ATP-dependent specificity component of clpP serine protease, chaperone [Pseudomonas fluorescens Pf0-1] Length = 427 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400 >gi|85704730|ref|ZP_01035831.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217] gi|85670548|gb|EAQ25408.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. 217] Length = 422 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+I LD Y+IGQ AK+ +++A+ N ++R EL NILL+GPTG GKT Sbjct: 65 APRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDARGIGEIFTDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + EG L FT+D++ A++ Sbjct: 297 IPEFVGRLPVIATLEDLDEDALVTILTQPKNALVKQYQRLFELEGAQLSFTDDALKAISK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F ++ + V+++ E V Sbjct: 357 RAIARKT-----GARGLRSILEDILLDTMFDLPSMEHVEEVLVNEEAV 399 >gi|300788575|ref|YP_003768866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis mediterranei U32] gi|299798089|gb|ADJ48464.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Amycolatopsis mediterranei U32] Length = 431 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDE---LMPKNILLVG 60 P +I L++YIIGQ+DAKR +A+A+ N ++R Q P D ++E L NIL++G Sbjct: 64 PADIHEFLEQYIIGQEDAKRTLAVAVYNHYKRIQADDKAGPKDSKEESVELAKSNILMLG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 PTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T ++LFI +GAF + P DL+ Sbjct: 243 DTTNVLFIVAGAFAGLEKIINERVGKRGLGFGAEIRTKSEIEESDVFSDTMPEDLIKFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L+K ILT + L+ QYK+L + + + L+FT+ +++A+AD Sbjct: 303 IPEFIGRLPVVATVNHLDKDSLVNILTQPRNALVKQYKKLFEMDNVELEFTKTALEAIAD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV L T GAR L+ +ME VL+ + + Sbjct: 363 QAV-LRGT----GARGLRAIMEEVLQPVMY 387 >gi|153814159|ref|ZP_01966827.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756] gi|317499958|ref|ZP_07958194.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] gi|331087819|ref|ZP_08336744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 3_1_46FAA] gi|145848555|gb|EDK25473.1| hypothetical protein RUMTOR_00368 [Ruminococcus torques ATCC 27756] gi|316898675|gb|EFV20710.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] gi|330409514|gb|EGG88955.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 3_1_46FAA] Length = 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P E+ + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 64 LTPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEQDLGVELQKSNILMLGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 124 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 167 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 57/212 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 176 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQELIQ 235 Query: 291 INTDHILFIASGAFH---------VSR-------------------------PADL---- 312 I+T +ILFI GAF + R P DL Sbjct: 236 IDTTNILFICGGAFEGIDKIIETRLDRKSIGFNAEIAEKHEYDMDVLLQEVLPQDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L L+K ILT+ +S ++ QY++L++ +G+ L+F D++ A+A Sbjct: 296 LIPELIGRLPVTVTLDLLDKDALIRILTEPKSAIVKQYQKLLELDGVKLEFDRDALIAVA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 + + + GAR L+ +ME+++ D + Sbjct: 356 ETTLKRKT-----GARGLRAIMEKIMMDTMYQ 382 >gi|16763830|ref|NP_459445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414395|ref|YP_151470.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179061|ref|YP_215478.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615357|ref|YP_001589321.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167990433|ref|ZP_02571533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231438|ref|ZP_02656496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237564|ref|ZP_02662622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261114|ref|ZP_02683087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465543|ref|ZP_02699425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818939|ref|ZP_02830939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445635|ref|YP_002039692.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451482|ref|YP_002044484.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471272|ref|ZP_03077256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734820|ref|YP_002113480.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250772|ref|YP_002145430.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263118|ref|ZP_03163192.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363315|ref|YP_002142952.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242558|ref|YP_002214403.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390026|ref|ZP_03216637.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351760|ref|YP_002225561.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|224582287|ref|YP_002636085.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911420|ref|ZP_04655257.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|21263472|sp|Q8ZRC0|CLPX_SALTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81309773|sp|Q57SB4|CLPX_SALCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81360133|sp|Q5PFN5|CLPX_SALPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044148|sp|A9MWX5|CLPX_SALPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689941|sp|B5BD82|CLPX_SALPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690000|sp|B5EXI9|CLPX_SALA4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690231|sp|B4T9E4|CLPX_SALHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690324|sp|B5FKV4|CLPX_SALDC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690478|sp|B5R6V0|CLPX_SALG2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690697|sp|B4TMC7|CLPX_SALSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238693543|sp|B4SWU2|CLPX_SALNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763861|sp|C0Q7X4|CLPX_SALPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|16418956|gb|AAL19404.1| specificity component of clpA-clpP ATP-dependent serine protease, chaperone [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128652|gb|AAV78158.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126694|gb|AAX64397.1| specificity component of clpA-clpP ATP-dependent serine protease, chaperone [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364721|gb|ABX68489.1| hypothetical protein SPAB_03128 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404298|gb|ACF64520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409786|gb|ACF70005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457636|gb|EDX46475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710322|gb|ACF89543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631578|gb|EDX50098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094792|emb|CAR60325.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214475|gb|ACH51872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241373|gb|EDY23993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289504|gb|EDY28867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937074|gb|ACH74407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602471|gb|EDZ01017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271541|emb|CAR36359.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330906|gb|EDZ17670.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333989|gb|EDZ20753.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344101|gb|EDZ30865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349962|gb|EDZ36593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466814|gb|ACN44644.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245732|emb|CBG23529.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992165|gb|ACY87050.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157060|emb|CBW16544.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911482|dbj|BAJ35456.1| ATP-dependent Clp protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084723|emb|CBY94514.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226027|gb|EFX51078.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614727|gb|EFY11656.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618833|gb|EFY15721.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623540|gb|EFY20379.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629161|gb|EFY25940.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631882|gb|EFY28636.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637381|gb|EFY34083.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642066|gb|EFY38676.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647885|gb|EFY44360.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652563|gb|EFY48917.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653275|gb|EFY49608.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660576|gb|EFY56812.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664728|gb|EFY60921.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669219|gb|EFY65369.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670764|gb|EFY66897.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678997|gb|EFY75052.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682026|gb|EFY78051.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685145|gb|EFY81142.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713522|gb|EFZ05093.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128769|gb|ADX16199.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192961|gb|EFZ78184.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196957|gb|EFZ82099.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203942|gb|EFZ88959.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206973|gb|EFZ91926.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214176|gb|EFZ98934.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214500|gb|EFZ99251.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223057|gb|EGA07400.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227006|gb|EGA11187.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230176|gb|EGA14296.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233914|gb|EGA18003.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238392|gb|EGA22450.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244079|gb|EGA28088.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246240|gb|EGA30223.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251866|gb|EGA35729.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257863|gb|EGA41542.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261124|gb|EGA44716.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264946|gb|EGA48445.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272509|gb|EGA55916.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622152|gb|EGE28497.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626795|gb|EGE33138.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987398|gb|AEF06381.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|84515417|ref|ZP_01002779.1| ATP-dependent protease ATP-binding subunit [Loktanella vestfoldensis SKA53] gi|84510700|gb|EAQ07155.1| ATP-dependent protease ATP-binding subunit [Loktanella vestfoldensis SKA53] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AKR +++A+ N ++R AD D EL NI+L+GPTG GK Sbjct: 65 TPSDICAVLDDYVIGQVHAKRVLSVAVHNHYKRLN-HADKSDIELAKSNIMLIGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 176 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF ++R P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIARRSKGSGMGFGADVKDVDERGIGEVFQDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 297 IPEFVGRLPVIATLTDLDEDALITILTKPKNALVKQYQRLFELENTKLTFTDDALTAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+++ME +L D F + T VV++ E V Sbjct: 357 RAIKRKT-----GARGLRSIMEGILLDTMFDLPGMDTVTEVVVNEEAV 399 >gi|163731526|ref|ZP_02138973.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis Och 149] gi|161394980|gb|EDQ19302.1| ATP-dependent protease ATP-binding subunit [Roseobacter litoralis Och 149] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P++I + LD Y+IGQ AKR +++A+ N ++R Q D+ EL NILL+GPTG Sbjct: 65 TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRGNDDRGVGEIFTDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELSFTDDALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L + F L T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEDILLNTMFELPGLDSVTEVVVNEEAV 400 >gi|152995750|ref|YP_001340585.1| ATP-dependent protease ATP-binding subunit ClpX [Marinomonas sp. MWYL1] gi|226706592|sp|A6VW21|CLPX_MARMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150836674|gb|ABR70650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MWYL1] Length = 426 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P ++ + LD Y+IGQ AKR +A+A+ N ++R Q D EL NILL+GPTG G Sbjct: 70 TPAKLSAALDDYVIGQDKAKRVLAVAVYNHYKRLRHQGKTDTSIELGKSNILLIGPTGSG 129 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 183 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H DL Sbjct: 244 DTSNILFICGGAFAGLERVISDRTEKSSIGFSATVKSKEEGRSFSEAVHRVETEDLVKFG 303 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ IL+ ++ L+ QY+ L + EG+ L+FT +S+ A Sbjct: 304 LIPEFVGRLPVVATLSELDEEALMTILSQPKNALVKQYQHLFELEGVELEFTPESLREAA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +A+ + GAR L++++E L D + + VV+DA +R Sbjct: 364 KLALERKT-----GARGLRSILESALLDCMYELPTRNDVVKVVMDATSIR 408 >gi|239815494|ref|YP_002944404.1| ATP-dependent protease ATP-binding subunit ClpX [Variovorax paradoxus S110] gi|259491272|sp|C5CJT5|CLPX_VARPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239802071|gb|ACS19138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax paradoxus S110] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +++A+ N ++R + + EL NILL+GPTG Sbjct: 67 TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V ++R Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQR 181 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGASVKSKAQRSITEVFREVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ ++ Q+ +L++ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386 >gi|167032911|ref|YP_001668142.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida GB-1] gi|189044143|sp|B0KJG7|CLPX_PSEPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166859399|gb|ABY97806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas putida GB-1] Length = 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + E + L+F D++ A+A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + +E VVID Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKEVSKVVID 400 >gi|301631595|ref|XP_002944883.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like [Xenopus (Silurana) tropicalis] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + AD + EL NILL+GPTG Sbjct: 67 TPAEIKANLDNYVIGQEKAKRTLAVAVYNHYKRLRYKDKADKDEVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR PF+ + T TE GYVG +VE II L+ V +++R Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIISKLLQSCNYDVEKAQR 181 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T ++LFI GAF +S P DL+ Sbjct: 242 DTTNVLFICGGAFAGLEKVIENRTEASGIGFGAAVRSKQQRSISEVFQDIEPEDLIKFGI 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L QY +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVTSLAELSEDALVQILTEPKNALAKQYSKLLSMEGVELEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+ L Sbjct: 362 KALARKT-----GARGLRSILEQAL 381 >gi|82542926|ref|YP_406873.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii Sb227] gi|123560438|sp|Q325G3|CLPX_SHIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81244337|gb|ABB65045.1| ATP-dependent specificity component of clpP serine protease [Shigella boydii Sb227] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L D + ++ EK V+ Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKGVI 398 >gi|229824054|ref|ZP_04450123.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271] gi|229786408|gb|EEP22522.1| hypothetical protein GCWU000282_01358 [Catonella morbi ATCC 51271] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 P EI++ L++Y+IGQ +AK+++A+A+ N ++R + EL NI L+GPTG Sbjct: 64 LKPAEIMAHLNQYVIGQTEAKKSLAVAVYNHYKRINASIATHEADIELQKSNICLIGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+L PF + T TE GYVG +VE I+ LV A Sbjct: 124 SGKTFLAQSLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLVQAA 170 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 55/209 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G Sbjct: 179 HGIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIANIPPKGGRKHPNQEFIQ 238 Query: 291 INTDHILFIASGAF--------------------------------HVSRPADLL----- 313 ++T ILFI GAF DLL Sbjct: 239 LDTSQILFIVGGAFDGIESIVKERLGSKVIGFGSSNGKLDQSKSLMQQVTSEDLLKFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L + D ILT+ ++ L+ QY+ L + +G+ L+F E ++ A+A Sbjct: 299 PEFIGRLPVMAMLEKLTQEDLVRILTEPKNALVKQYQRLFQIDGVELEFKEKALIAIAKQ 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E V+ DI F Sbjct: 359 AIERNT-----GARGLRSILESVMLDIMF 382 >gi|70731345|ref|YP_261086.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas fluorescens Pf-5] gi|68345644|gb|AAY93250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas fluorescens Pf-5] Length = 438 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R D EL NILL+GPTG G Sbjct: 78 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKRLNQRDKKSDDVELGKSNILLIGPTGSG 137 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 138 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 252 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFG 311 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411 >gi|148548676|ref|YP_001268778.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida F1] gi|166214807|sp|A5W634|CLPX_PSEP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148512734|gb|ABQ79594.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas putida F1] gi|313499613|gb|ADR60979.1| ClpX [Pseudomonas putida BIRD-1] Length = 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + E + L+F D++ A+A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + ++ VVID Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVID 400 >gi|300930259|ref|ZP_07145672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 187-1] gi|300461831|gb|EFK25324.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 187-1] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPIVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|269914476|pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx gi|269914477|pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx gi|269914478|pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx gi|269914479|pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx gi|269914480|pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx gi|269914481|pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 58 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 59 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 117 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++D+ DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 177 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 178 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 297 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 298 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 338 >gi|229591361|ref|YP_002873480.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas fluorescens SBW25] gi|259491265|sp|C3JYJ9|CLPX_PSEFS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229363227|emb|CAY50310.1| ATP-dependent specificity component of clpP serine protease, chaperone [Pseudomonas fluorescens SBW25] Length = 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400 >gi|329908484|ref|ZP_08274874.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oxalobacteraceae bacterium IMCC9480] gi|327546711|gb|EGF31662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oxalobacteraceae bacterium IMCC9480] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI L +Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQEICELLGQYVIGQDGAKRILSVAVYNHYKRLRHLGKKDDVELAKSNILLVGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQAC 170 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +I+FI GAF + P DL+ Sbjct: 240 DTTNIMFICGGAFDGLAKIVSNRSEKSGIGFSASVKSQSERSASEMLLEAEPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + IL + ++ LI QY L++ EG L+ ++ A+A Sbjct: 300 IPELVGRLPVVATLSELTEDAMIQILLEPKNALIKQYARLLQMEGAELEVRPAALQAIAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ F + Q VVID Sbjct: 360 KALQRKT-----GARGLRSILEHALLDVMFELPNQQNVSKVVID 398 >gi|325274290|ref|ZP_08140401.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp. TJI-51] gi|324100573|gb|EGB98308.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas sp. TJI-51] Length = 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + E + L+F D++ A+A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALVQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + ++ VVID Sbjct: 361 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 400 >gi|301330695|ref|ZP_07223297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 78-1] gi|300843356|gb|EFK71116.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 78-1] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIFHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|110680062|ref|YP_683069.1| ATP-dependent protease ATP-binding subunit ClpX [Roseobacter denitrificans OCh 114] gi|123361806|sp|Q165G0|CLPX_ROSDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|109456178|gb|ABG32383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter denitrificans OCh 114] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P++I + LD Y+IGQ AKR +++A+ N ++R Q D+ EL NILL+GPTG Sbjct: 65 TPKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRGNDDRGVGEIFTDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F L+ T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAV 400 >gi|261337233|ref|ZP_05965117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium gallicum DSM 20093] gi|270277588|gb|EFA23442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium gallicum DSM 20093] Length = 477 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 60/231 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSV-----STKYGS---- 290 +GIV++DE DKI AR SG+ ++R EGVQ+ LL L+EG+ V + G Sbjct: 193 HGIVYIDEIDKI-ARKSGDNTSLTRDVSGEGVQQALLKLMEGTIVDVPIEHARKGKEAQT 251 Query: 291 --INTDHILFIASGAF-------------HVS--------RPAD---------------- 311 I+T ++LFI +GAF H S P D Sbjct: 252 VRIDTRNVLFICAGAFVGLNDIVERRLGRHESGFGSALRTAPLDHVTLENAVSADDLADF 311 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 LLPE GR PV LK L++ D + +LT L QY +L T+G+ L FT+D+I+ + Sbjct: 312 GLLPEFIGRVPVVSVLKQLDEHDLQAVLTQPRDALTKQYAKLFATDGVDLRFTQDAIEEI 371 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ ++ GAR L+ +MER LE F + V++DA +R Sbjct: 372 AHQAIASHT-----GARGLRAIMERALESTMFELPSHDDVVAVIVDAPSIR 417 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPADLRDE 50 +P I ++L+ ++GQ AKR +++A+ N ++R +P L D Sbjct: 64 TPASINAKLNDTVVGQAAAKRTLSVAVHNHYKRVLMEEREALGAADGSHHHAMPQALVDV 123 Query: 51 LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 + K NILL+GPTGVGKT +++ LA PFI + T TE GYVG +VE ++ L+ Sbjct: 124 RVSKSNILLIGPTGVGKTYLAQTLADAMDVPFIIADATSLTEAGYVGDDVETLLSRLL 181 >gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium sp. Marseille] gi|166214779|sp|A6SY75|CLPX_JANMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151280777|gb|ABR89187.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Janthinobacterium sp. Marseille] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+E+ LD+Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 67 TPQELCELLDQYVIGQNPAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF+ + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S + I Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 239 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T +I+FI GAF + P DL+ Sbjct: 240 DTTNIMFICGGAFDGLAKIISERSEKSGIGFSASVKSREERTASQVMMDTEPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L+ L++ IL + ++ LI QY +L++ EG L+ ++ A+A Sbjct: 300 IPELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAK 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ F + Q VVID Sbjct: 360 KAIARKT-----GARGLRSILEHALLDVMFELPNEQNVAKVVID 398 >gi|15800168|ref|NP_286180.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H7 EDL933] gi|15829746|ref|NP_308519.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. Sakai] gi|16128423|ref|NP_414972.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K-12 substr. MG1655] gi|24111822|ref|NP_706332.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri 2a str. 301] gi|26246449|ref|NP_752488.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli CFT073] gi|30061940|ref|NP_836111.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri 2a str. 2457T] gi|74311013|ref|YP_309432.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sonnei Ss046] gi|82775655|ref|YP_402002.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella dysenteriae Sd197] gi|89107308|ref|AP_001088.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K-12 substr. W3110] gi|91209512|ref|YP_539498.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli UTI89] gi|110640699|ref|YP_668427.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli 536] gi|110804466|ref|YP_687986.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella flexneri 5 str. 8401] gi|117622698|ref|YP_851611.1| ATP-dependent protease ATP-binding subunit [Escherichia coli APEC O1] gi|157157655|ref|YP_001461625.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli E24377A] gi|157159965|ref|YP_001457283.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli HS] gi|168754543|ref|ZP_02779550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4401] gi|168768393|ref|ZP_02793400.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4486] gi|168778931|ref|ZP_02803938.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4076] gi|168786289|ref|ZP_02811296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC869] gi|170021189|ref|YP_001726143.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli ATCC 8739] gi|170080024|ref|YP_001729344.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K-12 substr. DH10B] gi|170682782|ref|YP_001742582.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli SMS-3-5] gi|187730793|ref|YP_001879149.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella boydii CDC 3083-94] gi|188492973|ref|ZP_03000243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 53638] gi|193064164|ref|ZP_03045248.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli E22] gi|208807403|ref|ZP_03249740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4206] gi|208814875|ref|ZP_03256054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4045] gi|208822907|ref|ZP_03263225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4042] gi|209398902|ref|YP_002269085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4115] gi|209917655|ref|YP_002291739.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli SE11] gi|215485519|ref|YP_002327950.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O127:H6 str. E2348/69] gi|217325849|ref|ZP_03441933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. TW14588] gi|218553005|ref|YP_002385918.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli IAI1] gi|218557348|ref|YP_002390261.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli S88] gi|218688302|ref|YP_002396514.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli ED1a] gi|218693901|ref|YP_002401568.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli 55989] gi|218698650|ref|YP_002406279.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli IAI39] gi|218703722|ref|YP_002411241.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli UMN026] gi|227884551|ref|ZP_04002356.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972] gi|237707567|ref|ZP_04538048.1| ATP-dependent protease ATP-binding subunit [Escherichia sp. 3_2_53FAA] gi|238899726|ref|YP_002925522.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli BW2952] gi|253774573|ref|YP_003037404.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160507|ref|YP_003043615.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli B str. REL606] gi|254791622|ref|YP_003076459.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. TW14359] gi|256020410|ref|ZP_05434275.1| ATP-dependent protease ATP-binding subunit ClpX [Shigella sp. D9] gi|256023943|ref|ZP_05437808.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia sp. 4_1_40B] gi|260842639|ref|YP_003220417.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O103:H2 str. 12009] gi|260853661|ref|YP_003227552.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O26:H11 str. 11368] gi|260866599|ref|YP_003233001.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O111:H- str. 11128] gi|261223921|ref|ZP_05938202.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O157:H7 str. FRIK2000] gi|261256365|ref|ZP_05948898.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O157:H7 str. FRIK966] gi|291281345|ref|YP_003498163.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia coli O55:H7 str. CB9615] gi|293403559|ref|ZP_06647650.1| ClpX [Escherichia coli FVEC1412] gi|293408588|ref|ZP_06652427.1| ATP-dependent Clp protease [Escherichia coli B354] gi|293413693|ref|ZP_06656342.1| ATP-dependent Clp protease [Escherichia coli B185] gi|293418509|ref|ZP_06660944.1| ATP-dependent Clp protease [Escherichia coli B088] gi|298379171|ref|ZP_06989052.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli FVEC1302] gi|300818230|ref|ZP_07098441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 107-1] gi|300820316|ref|ZP_07100468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 119-7] gi|300900509|ref|ZP_07118676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 198-1] gi|300903294|ref|ZP_07121222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 84-1] gi|300918179|ref|ZP_07134786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 115-1] gi|300924165|ref|ZP_07140157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 182-1] gi|300937055|ref|ZP_07151921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 21-1] gi|300947909|ref|ZP_07162057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 116-1] gi|300958006|ref|ZP_07170170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 175-1] gi|300988007|ref|ZP_07178487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 45-1] gi|300997373|ref|ZP_07181713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 200-1] gi|301022568|ref|ZP_07186440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 69-1] gi|301025666|ref|ZP_07189184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 196-1] gi|301301589|ref|ZP_07207724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 124-1] gi|301647364|ref|ZP_07247176.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 146-1] gi|306813094|ref|ZP_07447287.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli NC101] gi|307137083|ref|ZP_07496439.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli H736] gi|307312184|ref|ZP_07591820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli W] gi|309787030|ref|ZP_07681642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella dysenteriae 1617] gi|309794829|ref|ZP_07689250.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 145-7] gi|312964537|ref|ZP_07778793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 2362-75] gi|312970534|ref|ZP_07784715.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 1827-70] gi|331640958|ref|ZP_08342093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H736] gi|331645614|ref|ZP_08346718.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli M605] gi|331651376|ref|ZP_08352401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli M718] gi|331656495|ref|ZP_08357457.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA206] gi|331661819|ref|ZP_08362742.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA143] gi|331666793|ref|ZP_08367667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA271] gi|331671985|ref|ZP_08372781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA280] gi|331676110|ref|ZP_08376822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H591] gi|331681833|ref|ZP_08382466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H299] gi|332281589|ref|ZP_08394002.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Shigella sp. D9] gi|62288037|sp|P0A6H1|CLPX_ECOLI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|62288038|sp|P0A6H2|CLPX_ECOL6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|62288039|sp|P0A6H3|CLPX_ECO57 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|62288040|sp|P0A6H4|CLPX_SHIFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122424751|sp|Q1RF97|CLPX_ECOUT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122957619|sp|Q0T7E5|CLPX_SHIF8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123049431|sp|Q0TKK3|CLPX_ECOL5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123563420|sp|Q32JJ4|CLPX_SHIDS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123617887|sp|Q3Z4W5|CLPX_SHISS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214775|sp|A1A8A7|CLPX_ECOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167009013|sp|A7ZIJ6|CLPX_ECO24 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167009014|sp|A7ZX96|CLPX_ECOHS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044134|sp|B1J010|CLPX_ECOLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706586|sp|B7MD97|CLPX_ECO45 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706587|sp|B7NJ56|CLPX_ECO7I RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706588|sp|B7M3T1|CLPX_ECO8A RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706589|sp|B7N8Z2|CLPX_ECOLU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706590|sp|B1LJJ5|CLPX_ECOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229889854|sp|B1XFM6|CLPX_ECODH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238066655|sp|B5Z3U5|CLPX_ECO5E RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238066656|sp|B6HZP5|CLPX_ECOSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689516|sp|B2U4P3|CLPX_SHIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763846|sp|B7UJR1|CLPX_ECO27 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763847|sp|B7L675|CLPX_ECO55 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763848|sp|B7MQF4|CLPX_ECO81 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|259491256|sp|C4ZTJ5|CLPX_ECOBW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|12513300|gb|AAG54788.1|AE005223_3 ATP-dependent specificity component of clpP serine protease, chaperone [Escherichia coli O157:H7 str. EDL933] gi|26106847|gb|AAN79032.1|AE016756_215 ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia coli CFT073] gi|347729|gb|AAA16116.1| ATP-dependent protease ATPase subunit [Escherichia coli] gi|1773122|gb|AAB40194.1| ATP-dependent Clp proteinase [Escherichia coli] gi|1786642|gb|AAC73541.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K-12 substr. MG1655] gi|13359949|dbj|BAB33915.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli O157:H7 str. Sakai] gi|24050613|gb|AAN42039.1| ATP-dependent specificity component of clpP serine protease [Shigella flexneri 2a str. 301] gi|30040184|gb|AAP15917.1| ATP-dependent specificity component of clpP serine protease [Shigella flexneri 2a str. 2457T] gi|73854490|gb|AAZ87197.1| ATP-dependent specificity component of clpP serine protease, chaperone [Shigella sonnei Ss046] gi|81239803|gb|ABB60513.1| ATP-dependent specificity component of clpP serine protease [Shigella dysenteriae Sd197] gi|85674578|dbj|BAE76218.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K12 substr. W3110] gi|91071086|gb|ABE05967.1| ATP-dependent specificity component of ClpP serine protease, chaperone [Escherichia coli UTI89] gi|110342291|gb|ABG68528.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli 536] gi|110614014|gb|ABF02681.1| ATP-dependent protease ATP-binding subunit protease [Shigella flexneri 5 str. 8401] gi|115511822|gb|ABI99896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli APEC O1] gi|157065645|gb|ABV04900.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli HS] gi|157079685|gb|ABV19393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli E24377A] gi|169756117|gb|ACA78816.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli ATCC 8739] gi|169887859|gb|ACB01566.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli str. K-12 substr. DH10B] gi|170520500|gb|ACB18678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli SMS-3-5] gi|187427785|gb|ACD07059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella boydii CDC 3083-94] gi|188488172|gb|EDU63275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 53638] gi|189002703|gb|EDU71689.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4076] gi|189357986|gb|EDU76405.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4401] gi|189362383|gb|EDU80802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4486] gi|189373571|gb|EDU91987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC869] gi|192929193|gb|EDV82803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli E22] gi|208727204|gb|EDZ76805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4206] gi|208731523|gb|EDZ80211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4045] gi|208737100|gb|EDZ84784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4042] gi|209160302|gb|ACI37735.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC4115] gi|209743844|gb|ACI70229.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli] gi|209743846|gb|ACI70230.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli] gi|209743848|gb|ACI70231.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli] gi|209743850|gb|ACI70232.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli] gi|209743852|gb|ACI70233.1| ATP-dependent specificity component of clpP serine protease ClpX [Escherichia coli] gi|209910914|dbj|BAG75988.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli SE11] gi|215263591|emb|CAS07921.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O127:H6 str. E2348/69] gi|217322070|gb|EEC30494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli O157:H7 str. TW14588] gi|218350633|emb|CAU96325.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli 55989] gi|218359773|emb|CAQ97314.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli IAI1] gi|218364117|emb|CAR01782.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli S88] gi|218368636|emb|CAR16375.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli IAI39] gi|218425866|emb|CAR06672.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli ED1a] gi|218430819|emb|CAR11693.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli UMN026] gi|222032233|emb|CAP74972.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia coli LF82] gi|226898777|gb|EEH85036.1| ATP-dependent protease ATP-binding subunit [Escherichia sp. 3_2_53FAA] gi|227838637|gb|EEJ49103.1| ATP-dependent protease ATP-binding subunit [Escherichia coli 83972] gi|238860036|gb|ACR62034.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli BW2952] gi|242376219|emb|CAQ30910.1| clpX, subunit of ClpX ATP-dependent protease specificity component and chaperone, ClpXP and ClpAXP [Escherichia coli BL21(DE3)] gi|253325617|gb|ACT30219.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972408|gb|ACT38079.1| ATP-dependent protease ATP-binding subunit [Escherichia coli B str. REL606] gi|253976618|gb|ACT42288.1| ATP-dependent protease ATP-binding subunit [Escherichia coli BL21(DE3)] gi|254591022|gb|ACT70383.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O157:H7 str. TW14359] gi|257752310|dbj|BAI23812.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O26:H11 str. 11368] gi|257757786|dbj|BAI29283.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O103:H2 str. 12009] gi|257762955|dbj|BAI34450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O111:H- str. 11128] gi|260450375|gb|ACX40797.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli DH1] gi|281599778|gb|ADA72762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Shigella flexneri 2002017] gi|284920248|emb|CBG33307.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli 042] gi|290761218|gb|ADD55179.1| ATP-dependent Clp protease ATP-binding subunit clpX [Escherichia coli O55:H7 str. CB9615] gi|291325037|gb|EFE64452.1| ATP-dependent Clp protease [Escherichia coli B088] gi|291429412|gb|EFF02432.1| ClpX [Escherichia coli FVEC1412] gi|291433751|gb|EFF06724.1| ATP-dependent Clp protease [Escherichia coli B185] gi|291464929|gb|ADE05991.1| ATP-dependent protease ClpX [Escherichia coli] gi|291471766|gb|EFF14249.1| ATP-dependent Clp protease [Escherichia coli B354] gi|294493190|gb|ADE91946.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli IHE3034] gi|298280284|gb|EFI21788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli FVEC1302] gi|299880020|gb|EFI88231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 196-1] gi|300304192|gb|EFJ58712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 200-1] gi|300315273|gb|EFJ65057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 175-1] gi|300355990|gb|EFJ71860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 198-1] gi|300397449|gb|EFJ80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 69-1] gi|300404589|gb|EFJ88127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 84-1] gi|300407559|gb|EFJ91097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 45-1] gi|300414630|gb|EFJ97940.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 115-1] gi|300419618|gb|EFK02929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 182-1] gi|300452509|gb|EFK16129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 116-1] gi|300457886|gb|EFK21379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 21-1] gi|300527101|gb|EFK48170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 119-7] gi|300529121|gb|EFK50183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 107-1] gi|300843086|gb|EFK70846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 124-1] gi|301074509|gb|EFK89315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 146-1] gi|305853857|gb|EFM54296.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli NC101] gi|306907686|gb|EFN38188.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli W] gi|307552345|gb|ADN45120.1| ATP-dependent specificity component of ClpP serine protease [Escherichia coli ABU 83972] gi|307628092|gb|ADN72396.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli UM146] gi|308121482|gb|EFO58744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 145-7] gi|308924608|gb|EFP70103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella dysenteriae 1617] gi|309700699|emb|CBI99995.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli ETEC H10407] gi|310337183|gb|EFQ02321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 1827-70] gi|312290771|gb|EFR18648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 2362-75] gi|312945016|gb|ADR25843.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O83:H1 str. NRG 857C] gi|313646935|gb|EFS11392.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri 2a str. 2457T] gi|315059718|gb|ADT74045.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli W] gi|315135120|dbj|BAJ42279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli DH1] gi|315256266|gb|EFU36234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 85-1] gi|315289844|gb|EFU49234.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 110-3] gi|315294228|gb|EFU53579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 153-1] gi|315299562|gb|EFU58810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 16-3] gi|315616621|gb|EFU97238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 3431] gi|320186068|gb|EFW60813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella flexneri CDC 796-83] gi|320192854|gb|EFW67494.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. EC1212] gi|320197088|gb|EFW71707.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli WV_060327] gi|320201682|gb|EFW76258.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli EC4100B] gi|320638433|gb|EFX08147.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. G5101] gi|320643814|gb|EFX12937.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H- str. 493-89] gi|320649165|gb|EFX17743.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H- str. H 2687] gi|320656058|gb|EFX23974.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661208|gb|EFX28639.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O55:H7 str. USDA 5905] gi|320665184|gb|EFX32277.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. LSU-61] gi|323153475|gb|EFZ39729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli EPECa14] gi|323160451|gb|EFZ46399.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli E128010] gi|323164239|gb|EFZ50046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella sonnei 53G] gi|323170524|gb|EFZ56174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli LT-68] gi|323178293|gb|EFZ63871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 1180] gi|323184731|gb|EFZ70102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli 1357] gi|323191358|gb|EFZ76621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli RN587/1] gi|323379717|gb|ADX51985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli KO11] gi|323938624|gb|EGB34873.1| ATP-dependent Clp protease [Escherichia coli E1520] gi|323943245|gb|EGB39401.1| ATP-dependent Clp protease [Escherichia coli E482] gi|323945343|gb|EGB41399.1| ATP-dependent Clp protease [Escherichia coli H120] gi|323952950|gb|EGB48818.1| ATP-dependent Clp protease [Escherichia coli H252] gi|323958631|gb|EGB54334.1| ATP-dependent Clp protease [Escherichia coli H263] gi|323963428|gb|EGB58990.1| ATP-dependent Clp protease [Escherichia coli H489] gi|323965125|gb|EGB60584.1| ATP-dependent Clp protease [Escherichia coli M863] gi|323972292|gb|EGB67502.1| ATP-dependent Clp protease [Escherichia coli TA007] gi|323976077|gb|EGB71170.1| ATP-dependent Clp protease [Escherichia coli TW10509] gi|324010069|gb|EGB79288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 57-2] gi|324010652|gb|EGB79871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 60-1] gi|324016701|gb|EGB85920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 117-3] gi|324116926|gb|EGC10839.1| ATP-dependent Clp protease [Escherichia coli E1167] gi|326341202|gb|EGD64994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. 1044] gi|326346023|gb|EGD69762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli O157:H7 str. 1125] gi|327254766|gb|EGE66382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli STEC_7v] gi|330910232|gb|EGH38742.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Escherichia coli AA86] gi|331037756|gb|EGI09976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H736] gi|331045776|gb|EGI17902.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli M605] gi|331051117|gb|EGI23169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli M718] gi|331054743|gb|EGI26752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA206] gi|331060241|gb|EGI32205.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA143] gi|331066017|gb|EGI37901.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA271] gi|331070974|gb|EGI42333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli TA280] gi|331076168|gb|EGI47450.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H591] gi|331081035|gb|EGI52200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli H299] gi|332094594|gb|EGI99640.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella boydii 5216-82] gi|332098459|gb|EGJ03425.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella boydii 3594-74] gi|332103941|gb|EGJ07287.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Shigella sp. D9] gi|332341802|gb|AEE55136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli UMNK88] gi|332760729|gb|EGJ91017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri 4343-70] gi|332761521|gb|EGJ91803.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri 2747-71] gi|332763736|gb|EGJ93974.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri K-671] gi|332768359|gb|EGJ98543.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri 2930-71] gi|333007845|gb|EGK27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri K-218] gi|333008124|gb|EGK27599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri VA-6] gi|333010899|gb|EGK30325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri K-272] gi|333020700|gb|EGK39960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri K-227] gi|333021843|gb|EGK41091.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shigella flexneri K-304] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|218247704|ref|YP_002373075.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC 8801] gi|257060959|ref|YP_003138847.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC 8802] gi|226706582|sp|B7JW74|CLPX_CYAP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|218168182|gb|ACK66919.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 8801] gi|256591125|gb|ACV02012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 8802] Length = 448 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 77/127 (60%), Gaps = 9/127 (7%) Query: 2 KLTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LM 52 +L+FN PREI LD Y+IGQ +AK+ +++A+ N ++R L + +E L Sbjct: 76 RLSFNQIPKPREIKKYLDEYVIGQDEAKKVLSVAVYNHYKRLSLASKPGEETSEDHIELQ 135 Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 NILL+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA Sbjct: 136 KSNILLMGPTGSGKTLLAQTLAQILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADL 195 Query: 113 IVRESRR 119 V E++R Sbjct: 196 DVEEAQR 202 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311 +T +ILFI GAF RP D Sbjct: 263 DTSNILFICGGAFVGLDKVIEQRRGKKSMGFIRPGDTNQSKEKRAADLMQQAEPDDLVKF 322 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR PV L+ L++ ILT + L+ QY++L+K + + L+F +D++ A+ Sbjct: 323 GMIPEFVGRIPVMASLEPLDEETLIAILTQPRNALVKQYQKLLKMDNVQLEFNKDAVRAI 382 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L+ ++E ++ D+ + Sbjct: 383 AQEAYRRKT-----GARALRGIVEELMLDVMY 409 >gi|103488220|ref|YP_617781.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingopyxis alaskensis RB2256] gi|123379515|sp|Q1GPH4|CLPX_SPHAL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|98978297|gb|ABF54448.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingopyxis alaskensis RB2256] Length = 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 66 TPLEICQHLDAYVIGQNKAKRVLSVAVHNHYKRLANSGRGEDVELAKSNILLVGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR PF + T TE GYVG +VE II L+ + V +++R Sbjct: 126 TLLAQTLARFLDVPFTMADATTLTEAGYVGEDVENIILKLLQSSDYNVEKAQR 178 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFIA GAF HV+ P + L Sbjct: 239 DTTNILFIAGGAFAGLEKIIGDRLQGKSIGFGAHVAGPDERRAGEVLKQIEPEDLLKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ IL + ++ L+ QYK+L E + L FT+D++ A+A Sbjct: 299 IPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F DL + +V+D + V Sbjct: 359 KAIERKT-----GARGLRSIVEAILLDTMFDLPDLTDVVEIVVDKDVV 401 >gi|319794077|ref|YP_004155717.1| ATP-dependent clp protease, ATP-binding subunit clpx [Variovorax paradoxus EPS] gi|315596540|gb|ADU37606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Variovorax paradoxus EPS] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +++A+ N ++R + + EL NILL+GPTG Sbjct: 67 TPLEIKTNLDNYVIGQEPAKRMLSVAVYNHYKRLRHKEKAKGDDVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V ++R Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIIQKLLQSCNYEVERAQR 181 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGATVKSKAQRSITEVFREVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ ++ Q+ +L++ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVASLAELSEDALVQILTEPKNAVVKQFTKLLQMEGVDLEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D F Sbjct: 362 KALARKT-----GARGLRSILEQSLIDTMF 386 >gi|317123028|ref|YP_004103031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermaerobacter marianensis DSM 12885] gi|315593008|gb|ADU52304.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermaerobacter marianensis DSM 12885] Length = 419 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R L + D EL NIL++GPTG GK Sbjct: 63 KPAEIKAFLDQYVIGQERAKKILAVAVYNHYKRIHLGGRIDDVELQKSNILMIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 236 DTTNILFICGGAFEGLDKIISSRIGRRVLGFGAEVRSKQETNVGEILRHIM-PEDLLKFG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L +L++ ILT+ ++ L+ QY +L+ + + L+F +++ A+A Sbjct: 295 LIPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYHKLLALDNVELEFEPEALRAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ + Sbjct: 355 QEALKRNT-----GARGLRAIVEELMLDLMY 380 >gi|298252431|ref|ZP_06976230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter racemifer DSM 44963] gi|297545664|gb|EFH79536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ktedonobacter racemifer DSM 44963] Length = 430 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I +L Y+IGQ+ AKRA+A+A+ N ++R + + D EL NILL+GPTG GK Sbjct: 67 APKKIYEQLSSYVIGQERAKRALAVAVYNHYKRIGVGMQIDDVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA++ PF + T TE GYVG +VE I+ L+ A +I R R Sbjct: 127 TLLAQTLAKVLDVPFCIADATALTEAGYVGEDVENILLRLIQTADFDIARAER 179 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 62/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 180 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQDFIQI 239 Query: 292 NTDHILFIASGAFH--------------------------------------VSRPADLL 313 NT +ILFI GAF P DLL Sbjct: 240 NTSNILFICGGAFEGLEKIVEQRLGSNKMMGFSGVKPSGETAEQEKDQPILTKLNPDDLL 299 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV V L L++ ILT+ ++ ++ QY++ ++ + + L FT D+++ Sbjct: 300 KFGLIPEFVGRLPVSVSLDPLDQEALVRILTEPKNAIVKQYQKFLQLDHVDLVFTSDALE 359 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A A+ A+ + GAR L++++E VL D+ + S K V+I+ E + Sbjct: 360 AAAERALKQKT-----GARGLRSIIEDVLLDVMYEIPSRADVKKVIINGEVI 406 >gi|8132824|gb|AAF73407.1|AF230642_1 ClpX [Ehrlichia chaffeensis] Length = 443 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPT 62 T P+EI LD Y+IGQ+ +K+ +++A+ N ++R L E+ N+LL+GPT Sbjct: 56 TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 116 GSGKTLLARTLARVLQIPFAMADATTLTEAGYVGEDVENILLKLLQAA 163 >gi|320173742|gb|EFW48925.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella dysenteriae CDC 74-1112] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|301049645|ref|ZP_07196594.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 185-1] gi|300298582|gb|EFJ54967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia coli MS 185-1] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VS-------------------------------RPADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISYRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|295695313|ref|YP_003588551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus tusciae DSM 2912] gi|295410915|gb|ADG05407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus tusciae DSM 2912] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P EI + LD+Y+IGQ AK+++A+A+ N ++R Q P D+ EL NILL+GPTG G Sbjct: 64 PTEIRAILDQYVIGQDHAKKSLAVAVYNHYKRINAQGKPDDV--ELSKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH--------------------------VSR--------PADLL---- 313 +T +ILFI GAF +SR P DLL Sbjct: 236 DTSNILFICGGAFDGLEQIIKRRLGRKVIGFGSEEARGTDLSRDEVLSKVLPEDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L +L+++ + IL + ++ L+ QY+ L++ + + L+FT++++ +A Sbjct: 296 IPEFVGRLPVITTLAALDETALKRILLEPKNALVKQYQRLLELDDVQLEFTDEALTEIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ + Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLDVMY 380 >gi|148269914|ref|YP_001244374.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga petrophila RKU-1] gi|170288599|ref|YP_001738837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga sp. RQ2] gi|281412205|ref|YP_003346284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga naphthophila RKU-10] gi|147735458|gb|ABQ46798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermotoga petrophila RKU-1] gi|170176102|gb|ACB09154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga sp. RQ2] gi|281373308|gb|ADA66870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotoga naphthophila RKU-10] Length = 406 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R D D E+ N+LL+GPTG GK Sbjct: 57 TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA++ PF + T TE GYVG +VE ++ L++ A Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFIA GAF HV+ P DL Sbjct: 228 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 286 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L L++ D IL + ++ ++ QY++L + +G+ L+ T++++ Sbjct: 287 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 346 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 +A A+ + GAR L+ V E ++ D+ F +L+ V+ E V L Sbjct: 347 IAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 393 >gi|88658550|ref|YP_507694.1| ATP-dependent protease ATP-binding subunit [Ehrlichia chaffeensis str. Arkansas] gi|123492907|sp|Q2GFT9|CLPX_EHRCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|88600007|gb|ABD45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ehrlichia chaffeensis str. Arkansas] Length = 406 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPT 62 T P+EI LD Y+IGQ+ +K+ +++A+ N ++R L E+ N+LL+GPT Sbjct: 56 TLKLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAA 163 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 107/228 (46%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 173 GIIYIDEVDKISRKSENTSITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232 Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314 NTD+ILFI GAF VS+ D L+P Sbjct: 233 NTDNILFIFGGAFDGLDKIIESRHRGSSMGFEANVQKVSKNKDIFCYTEPEDLVKFGLIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L++S IL + +++L+ QYK+L + + I L F + ++ +A A Sbjct: 293 EFVGRIPVITSLGELDESTLCRILVEPKNSLVKQYKKLFEMDNINLQFDDSALSVIAKKA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 V GAR L+ ++E +L D+ F +SD+ + VVI E V Sbjct: 353 -----AVRKTGARGLRAILEALLLDLMFESPGSSDVNQ--VVISKEMV 393 >gi|84499431|ref|ZP_00997719.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] gi|84392575|gb|EAQ04786.1| ATP-dependent protease ATP-binding subunit [Oceanicola batsensis HTCC2597] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD Y+IGQ+ AKR +++A+ N ++R A EL NILL+GPTG G Sbjct: 65 TPQEICDVLDDYVIGQKIAKRVLSVAVHNHYKRLNHAAKSGGDIELAKSNILLIGPTGCG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE II L+ + V +++R Sbjct: 125 KTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVEKAQR 178 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRDNDERGVGEVFQDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E L FT+D++ A++ Sbjct: 299 IPEFVGRLPVLATLEDLDEEALVTILTEPKNALVKQYQRLFELEDARLTFTDDALSAISR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 359 KAIERKT-----GARGLRSILEDILLDTMF 383 >gi|240146205|ref|ZP_04744806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] gi|257201661|gb|EEU99945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] gi|291536690|emb|CBL09802.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis M50/1] gi|291537974|emb|CBL11085.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis XB6B4] Length = 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 68 LKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNILMLGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ ++ A NI R R Sbjct: 128 TLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIERAQR 180 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 181 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQI 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312 +T +ILFI GAF + P D L Sbjct: 241 DTTNILFICGGAFDGLEKIIETRMDQKTIGFNADIRDKRDYNIGDVLKHALPQDFVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L++ IL + ++ L QY++L + +G+ LDF +++++A+AD Sbjct: 301 IPEFIGRVPVTVSLDMLDRDALIRILQEPKNALTKQYQKLFELDGVALDFDKEALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ +ME V D+ + Sbjct: 361 KALERKT-----GARGLRAIMEAVTLDLMY 385 >gi|261405360|ref|YP_003241601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. Y412MC10] gi|261281823|gb|ACX63794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. Y412MC10] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI LD+Y+IGQ AK+++++A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 64 PREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313 +T +ILFI GAF ++ R P DLL Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL++ ++ L QY++L++ + + L F +++A+A Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPSALEAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L++++E ++ D+ + + K VI + VR Sbjct: 356 EAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVITEQVVR 399 >gi|104781014|ref|YP_607512.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas entomophila L48] gi|95110001|emb|CAK14706.1| ATP-dependent Clp protease ATP-binding subunit [Pseudomonas entomophila L48] Length = 442 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 82 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 137 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 138 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 183 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 196 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 255 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 256 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 315 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + E + L+F D++ A+A Sbjct: 316 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 375 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + +E VVID Sbjct: 376 RKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVID 415 >gi|86357225|ref|YP_469117.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CFN 42] gi|190891273|ref|YP_001977815.1| ATP-dependent Clp protease, ATP-binding subunit [Rhizobium etli CIAT 652] gi|123512322|sp|Q2K9U6|CLPX_RHIEC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238692521|sp|B3PVY5|CLPX_RHIE6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86281327|gb|ABC90390.1| ATP-dependent Clp protease, ATP-binding subunit protein [Rhizobium etli CFN 42] gi|190696552|gb|ACE90637.1| ATP-dependent Clp protease protein, ATP-binding subunit [Rhizobium etli CIAT 652] gi|327188466|gb|EGE55680.1| ATP-dependent protease ATP-binding subunit [Rhizobium etli CNPAF512] Length = 425 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + EL NI+LVGPTG GK Sbjct: 68 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E VR Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404 >gi|320178280|gb|EFW53254.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shigella boydii ATCC 9905] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|78223079|ref|YP_384826.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter metallireducens GS-15] gi|123756422|sp|Q39UH3|CLPX_GEOMG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78194334|gb|ABB32101.1| ClpX, ATPase regulatory subunit [Geobacter metallireducens GS-15] Length = 417 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---LPADLRDELMPKNILLVGPTGVG 65 PREI LD Y+IGQ AK+ +A+A+ N ++R + P+D+ E+ NILL+GPTG G Sbjct: 66 PREIKDVLDEYVIGQDRAKKILAVAVYNHYKRIESMGKPSDV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II +L+ A Sbjct: 124 KTLLAQTLARILRVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTSNILFICGGAFAGLDNIIQQRIGVKTLGFGADVKSKVEKKAGELLTDVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ IL + +S L+ QY++L + E + L FT+ S+ A+A Sbjct: 298 IPEFIGRLPVLATLHELDEAAMVQILKEPKSALVKQYQKLFEMEHVKLKFTDGSLVAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S K VVI + + Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVISEDVI 400 >gi|61657345|emb|CAI44263.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga naphthophila RKU-10] Length = 413 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R D D E+ N+LL+GPTG GK Sbjct: 64 TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA++ PF + T TE GYVG +VE ++ L++ A Sbjct: 124 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 167 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 175 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 234 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFIA GAF HV+ P DL Sbjct: 235 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 293 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L L++ D IL + ++ ++ QY++L + +G+ L+ T++++ Sbjct: 294 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 353 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 +A A+ + GAR L+ V E ++ D+ F +L+ V+ E V L Sbjct: 354 IAKKAIKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 400 >gi|256556953|gb|ACU83575.1| ATP-dependent protease Clp ATPase subunit [uncultured bacterium HF130_AEPn_2] Length = 427 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRADALKSVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 361 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 400 >gi|139437041|ref|ZP_01771201.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC 25986] gi|133776688|gb|EBA40508.1| Hypothetical protein COLAER_00175 [Collinsella aerofaciens ATCC 25986] Length = 469 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 17/120 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------QQLPADL-RDE 50 +P EI EL Y++GQ+DAKRA+++A+ N +RR Q D+ + E Sbjct: 107 TPHEIYDELSAYVMGQEDAKRAMSVAVYNHYRRVIEGGAAVSAFDDDMGSQFDDDMDKVE 166 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L++ A Sbjct: 167 LAKSNILLLGPTGTGKTLLAQTLARILEVPFAIADATALTEAGYVGEDVENILLKLINAA 226 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV G I Sbjct: 236 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 295 Query: 292 NTDHILFIASGAF--------------------HVSRPA-----DLL------------- 313 +T +ILFI GAF ++ P DLL Sbjct: 296 DTTNILFICGGAFVGLDKIIADRVGNKGVGFNSEIAGPTSVDENDLLRQVLPQDLNAFGM 355 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV ++L++ D ILT+ ++ ++ QY+++ + E + L+F + ++ +A Sbjct: 356 IPEFVGRTPVVTQTQALDEDDLVSILTEPKNAVVRQYRKMFQLEDVELEFEDAALHEIAR 415 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+++ E VL+ F Sbjct: 416 MALARKT-----GARGLRSICEDVLQQTMF 440 >gi|269914470|pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx gi|269914471|pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx gi|269914472|pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx gi|269914473|pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx gi|269914474|pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx gi|269914475|pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 58 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 59 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 117 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++D+ DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 177 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 178 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 297 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 298 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 338 >gi|225012270|ref|ZP_03702707.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-2A] gi|225003825|gb|EEG41798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Flavobacteria bacterium MS024-2A] Length = 411 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PAD-----LL 313 +T +ILFIA GAF H+S+ P D L+ Sbjct: 235 DTSNILFIAGGAFDGINSHISKRLNLQAIGYKTAQEQRNVDKENMLQYITPRDIRSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV ++ L+K+ R ILT ++ L+ QY L + + I L FT ++D + D Sbjct: 295 PEIIGRLPVLTYMNPLDKATLREILTTPKNALVKQYIHLFEMDEIELQFTSGALDYIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F K + + +Y Sbjct: 355 ALQYK-----LGARGLRSLCEAILNDAMFELPQTDMKNLKVTKQY 394 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+EI + LD Y+IGQ+ +KR +++A+ N ++R A ++ E+ N+L+VGPTG Sbjct: 60 PKEIKAFLDTYVIGQESSKRVLSVAVYNHYKRLVQTASKKENDPVEIQKSNVLIVGPTGT 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ ++RL P V+ T TE GYVG +VE I+ L+ + Sbjct: 120 GKTLLAQTISRLLNVPLAIVDATVLTEAGYVGEDVESILSRLLQAS 165 >gi|254477070|ref|ZP_05090456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp. R11] gi|214031313|gb|EEB72148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruegeria sp. R11] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ D+ EL NILL+GPTG Sbjct: 65 TPKDICEVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 65/238 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFHVS----------------------------------RPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDKIIKQRGKGSAMGFGADVREESDAGVGETFKDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT++++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--------EKTVVIDAEYVRLH 422 A+ + GAR L++++E +L D F ++ E+ V DA+ + +H Sbjct: 359 RAIERKT-----GARGLRSILEDILLDTMFDLPGMESVEKVVVNEEAVTSDAQPLMIH 411 >gi|329923473|ref|ZP_08278954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. HGF5] gi|328941273|gb|EGG37568.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. HGF5] Length = 421 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI LD+Y+IGQ AK+++++A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 64 PREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313 +T +ILFI GAF ++ R P DLL Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL++ ++ L QY++L++ + + L F +++A+A Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPGALEAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L++++E ++ D+ + + K VI + VR Sbjct: 356 EAIKRNT-----GARGLRSIIESIMLDVMYEVPSRDDIKDCVITEQVVR 399 >gi|298480170|ref|ZP_06998368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. D22] gi|298273451|gb|EFI15014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. D22] Length = 414 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y ++ + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVTLDYAKMQL 403 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178 >gi|226944448|ref|YP_002799521.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter vinelandii DJ] gi|226719375|gb|ACO78546.1| ATP-dependent Clp protease, ATP binding subunit ClpX [Azotobacter vinelandii DJ] Length = 426 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R D +D EL NILL+GPTG G Sbjct: 67 APKEISTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF--------------------HVSRP--------------------AD 311 +T +ILFI GAF V P Sbjct: 240 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSPDVGKKIGEALRDVEPDDLVKFG 299 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ A+A Sbjct: 300 LIPEFVGRLPVIATLDELDEAALVQILTEPKNALTKQYGKLFEMEGVELEFRPDALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E VL D + Sbjct: 360 LRALERKT-----GARGLRSILEGVLLDTMY 385 >gi|281356560|ref|ZP_06243051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis vadensis ATCC BAA-548] gi|281316687|gb|EFB00710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Victivallis vadensis ATCC BAA-548] Length = 442 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 65/236 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 197 GIIYVDEIDKIARKTENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFLRI 256 Query: 292 NTDHILFIASGAF----------------------------------HVSR-------PA 310 +T +ILFI GAF H+++ P Sbjct: 257 DTSNILFICGGAFVGLDKIIQRRCGKQVLGFKRLVDDEAEQAELDAEHLAKNPYAKCEPE 316 Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DL+ PE GR PV L+ L K D IL + ++ LI QY+ L+ EG+ L+FTED Sbjct: 317 DLIRFGLIPEFVGRLPVVTSLEPLRKEDLIRILKEPKNALIRQYQRLLGMEGVTLEFTED 376 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +++ALAD AV + GAR L+ ++E ++ D+ F A + + VID +R Sbjct: 377 ALEALADKAVARGT-----GARGLRAILEEMMVDVMFDAPSREGISRCVIDGAVIR 427 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-----RD-----ELMPKNIL 57 SP EI +ELD+Y+IGQ+ AKR +A+A+ N ++R Q A + RD EL N+L Sbjct: 75 SPAEIKAELDQYVIGQERAKRVLAVAVHNHYKRLQTQAGVHTSAARDLFSDVELDKSNVL 134 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 L+GPTG GKT ++R LARL PF + T TE GYVG +VE II Sbjct: 135 LLGPTGSGKTLLARTLARLLDVPFAICDATTLTEAGYVGEDVENII 180 >gi|207855929|ref|YP_002242580.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238690386|sp|B5QTJ7|CLPX_SALEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|206707732|emb|CAR32017.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 423 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLALAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|124007707|ref|ZP_01692410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla marina ATCC 23134] gi|123986829|gb|EAY26601.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microscilla marina ATCC 23134] Length = 409 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EGS V+ K +I Sbjct: 173 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQGLLKMLEGSEVNVPPQGGRKHPEQKLITI 232 Query: 292 NTDHILFIASGAFH----------VSRPAD----------------------------LL 313 NT++ILFI GAF +RP L+ Sbjct: 233 NTENILFICGGAFDGIDRMIASRLKTRPIGFAGEDDQDDIDRDNLLQYVASQDLKTFGLI 292 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L R ILT+ ++ L+ QY++L E I L F++ +++ + D Sbjct: 293 PELIGRLPVVTYLPPLTHETIRKILTEPKNALVKQYQKLFAMENIDLTFSDGALNYIVDK 352 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E ++ D F SD + ++ID Y R Sbjct: 353 AME-----SKLGARGLRSICEAIMTDAMFEVTSDSEHSELIIDETYAR 395 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELM--PKNILLVGPTGV 64 PR++ +D++++GQ AK+ + +A+ N ++R Q+ +D D+++ NI++VG TG Sbjct: 58 PRQMKEFIDQFVVGQDQAKKVMTVAVYNHYKRLMQKQQSDNTDDVVIEKSNIIMVGQTGT 117 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG ++E ++ L+ A Sbjct: 118 GKTYLAKTLAKILQVPFCIADATVLTEAGYVGEDIENVLTRLLQAA 163 >gi|283784264|ref|YP_003364129.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter rodentium ICC168] gi|282947718|emb|CBG87273.1| ATP-dependent Clp protease ATP-binding subunit [Citrobacter rodentium ICC168] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLEDVEKVVID 399 >gi|149201012|ref|ZP_01877987.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035] gi|149145345|gb|EDM33371.1| ATP-dependent protease ATP-binding subunit [Roseovarius sp. TM1035] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PR+I LD Y+IGQ AK+ +++A+ N ++R EL NILL+GPTG GKT Sbjct: 65 APRDICKVLDDYVIGQARAKKVLSVAVHNHYKRLNNSGKSDIELSKSNILLIGPTGCGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 176 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 177 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVAAVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF R P DLL Sbjct: 237 DTTNILFICGGAFAGLDKIIAQRGKGSAMGFGADVRDNDARGVGEIFTDLEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + EG L FTED++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVTILTQPKNALVKQYQRLFELEGAQLSFTEDALKAVAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 357 RAIARKT-----GARGLRSILEDILLDTMF 381 >gi|94266225|ref|ZP_01289933.1| AAA ATPase, central region [delta proteobacterium MLMS-1] gi|93453198|gb|EAT03659.1| AAA ATPase, central region [delta proteobacterium MLMS-1] Length = 600 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 11/117 (9%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDE----- 50 + F+ +P E++S LD+Y++GQQ+AK +A + + R ++ D+ + Sbjct: 67 EFHFDLAPEELISHLDQYVVGQQEAKATLATKICTHFNRISRSLERRRVGDMNGDGGNVG 126 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 + N+LL+GPTGVGKT + + +AR G PF+K + TKF+E GYVG +V+ +IRDLV Sbjct: 127 RIKNNVLLIGPTGVGKTYLIKLIARHLGVPFVKGDATKFSETGYVGGDVDDLIRDLV 183 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 109/257 (42%), Gaps = 71/257 (27%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+D + RD ++ ++ +GIV+LDE DKI + G+ VSR GVQR LL +E + Sbjct: 174 DVDDLIRDLVREADHDLERARFGIVYLDEVDKIAGGEGRRGLDVSRSGVQRALLKPMEET 233 Query: 283 SVSTKYG----------------------SINTDHILFIASGAFH--------------- 305 V K ++NT HILFI SGAF+ Sbjct: 234 EVEMKVPHDPISMIEAVEHYRQTGKRRRQTVNTRHILFIMSGAFNGLEETVRRRLQQRSI 293 Query: 306 ---------VSRPADLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTE 342 RP L +I+ GR PV L L ++D IL++ Sbjct: 294 GFESTVAAAAGRPGAFLKKIKPEDLVDYGFESEFVGRLPVVAVLDELAEADLYHILSNPN 353 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 S++I+ K+ K GI L F + ++ LA A + GAR L +V+ER L Sbjct: 354 SSVIVSKKQDFKAYGIELYFEDVALRQLAVQAARERT-----GARALVSVVERALLHFER 408 Query: 403 SASDLQEKTVVIDAEYV 419 + + +V+D++ V Sbjct: 409 KLPSTEIRHLVVDSKLV 425 >gi|86137327|ref|ZP_01055904.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] gi|85825662|gb|EAQ45860.1| ATP-dependent protease ATP-binding subunit [Roseobacter sp. MED193] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 SP++I LD Y+IGQ AK+ +++A+ N ++R Q+ D+ EL NILL+GPTG Sbjct: 65 SPKDICEVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKAGNDI--ELAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 239 DTTNILFICGGAFAGLDRIIAQRGKGSAMGFGADVRNNDDRGVGEIFQELEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT++++ A+A Sbjct: 299 IPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEETELDFTDEALSAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L + F ++ T VV++ E V Sbjct: 359 RAIERKT-----GARGLRSILEDLLLETMFELPGMESVTKVVVNEEAV 401 >gi|281177609|dbj|BAI53939.1| ATP-dependent Clp protease ATP-binding subunit [Escherichia coli SE15] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|332298210|ref|YP_004440132.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema brennaborense DSM 12168] gi|332181313|gb|AEE17001.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema brennaborense DSM 12168] Length = 415 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 2/121 (1%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILL 58 ++LT +P+E LD+Y+IGQ AK+A+A+A+ N ++R LP D+ + NILL Sbjct: 54 IELTDVPTPKEFKEYLDQYVIGQDYAKKALAVAVYNHYKRMSLPKVENDDVRIEKSNILL 113 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LA+ PF + T TE GYVG +VE ++ L++ A V + Sbjct: 114 IGPTGSGKTLLAKTLAQKLKVPFAIADATTLTEAGYVGEDVENVLLKLINAADGNVAAAE 173 Query: 119 R 119 R Sbjct: 174 R 174 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIFIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTRASVPPQGGRKHPNQEMIDI 234 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312 +T +ILFI GAF +R AD L Sbjct: 235 DTTNILFICGGAFVGLDNIIETRVADHTMGFGTTFNALNEEDQAELLNKVIPDDLVKFGL 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PEI GR P+ V LK L K D +LILT+ ++ +I Q++ + L+FT+++I+A+A+ Sbjct: 295 IPEIIGRMPISVALKELTKDDLKLILTEPKNAIIKQFRASFAIDNTELEFTDEAIEAIAE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419 A+ + GAR L++++E++L ++ F ++ K +VI + V Sbjct: 355 TAIKRKT-----GARGLRSIVEKMLMNVMFEVPSIEGNKKLVITEDIV 397 >gi|218133241|ref|ZP_03462045.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC 43243] gi|217992114|gb|EEC58118.1| hypothetical protein BACPEC_01106 [Bacteroides pectinophilus ATCC 43243] Length = 422 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI LD Y+IGQ++AK+ +++A+ N ++R A+ D EL NIL++GPTG G Sbjct: 67 LKPMEIKEFLDEYVIGQEEAKKVLSVAVYNHYKRIMRKAEDDDVELQKSNILVIGPTGCG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTYLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 57/213 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 179 QYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTNASVPPQGGRKHPQQELI 238 Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADL--- 312 I+T +ILF+ GAF H P DL Sbjct: 239 PIDTTNILFMCGGAFDGLEKIIEGRMNQKSIGFNAEIGDRSNEDIGELFHKVTPQDLVKF 298 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV V L SL++ ILT+ ++ L+ QYK+L + + + L+FT +++A+ Sbjct: 299 GLIPEFVGRVPVVVALDSLDEKALVRILTEPKNALVKQYKKLFEMDEVDLEFTPQAVEAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A + + GAR L++++E V+ D ++ Sbjct: 359 AKKSFERKT-----GARGLRSIIEEVMMDTMYT 386 >gi|213853069|ref|ZP_03382601.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 201 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 >gi|77165152|ref|YP_343677.1| ATP-dependent protease ATP-binding subunit [Nitrosococcus oceani ATCC 19707] gi|254433871|ref|ZP_05047379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus oceani AFC27] gi|123757859|sp|Q3JAJ9|CLPX_NITOC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|76883466|gb|ABA58147.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus oceani ATCC 19707] gi|207090204|gb|EDZ67475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus oceani AFC27] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L++Y+IGQ AK+ +++A+ N ++R QL D EL NILL+GPTG GK Sbjct: 68 TPHEIRDILNQYVIGQNHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 NT +ILFI GAF P DL+ Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+++ IL + ++ L Q+ L + E ++F ED++ A+A Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILREPKNALTKQFARLFEMENCKVEFREDALRAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ L + GAR L++++E VL D + + VVID V+ Sbjct: 361 TKAMELKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405 >gi|327404287|ref|YP_004345125.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola taffensis DSM 16823] gi|327319795|gb|AEA44287.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Fluviicola taffensis DSM 16823] Length = 406 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 55/228 (24%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K Sbjct: 170 QHGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPQGGRKHPEQKMI 229 Query: 290 SINTDHILFIASGAF---------HVSR-----------------------PAD-----L 312 +I+T +ILF+ GAF V+R P D L Sbjct: 230 AIDTKNILFVCGGAFDGIERIIASRVNRQTIGFGSQVTEKVDEDNFLKYITPTDVKSYGL 289 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GRFPV +L+ L+ + I+T+ ++ +I QY L + +GI L F D +D + + Sbjct: 290 IPELIGRFPVLTYLEPLDAKSLKRIITEPKNAIIKQYMRLFEIDGIRLKFDADVLDFIVE 349 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E +L D + E +D EY + Sbjct: 350 KAIEFK-----LGARGLRSICEAILTDAMYELPSKNETEFRVDLEYAK 392 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 62/104 (59%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P++I LD Y+IGQ DAK+ +++A+ N ++R E+ N++LVG TG GK Sbjct: 59 LKPQDIKERLDEYVIGQDDAKKTLSVAVYNHYKRLHQTKIEDVEIEKSNVILVGRTGTGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 119 TLLAKTIAKMLNVPFCIADATVLTEAGYVGEDVESILSRLLQAA 162 >gi|332653035|ref|ZP_08418780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcaceae bacterium D16] gi|332518181|gb|EGJ47784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcaceae bacterium D16] Length = 438 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 65/103 (63%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI + LD+YIIGQ+ AK A+++A+ N ++R EL NILL+GPTG GKT Sbjct: 66 TPREIHAVLDQYIIGQEKAKVALSVAVYNHYKRIYFGGAEDVELQKSNILLMGPTGCGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR+ PF + T TE GYVG +VE I+ LV A Sbjct: 126 LFAQTLARVLKVPFAIADATTLTEAGYVGDDVENILLRLVQAA 168 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 178 GIIYIDEMDKIARKSENTSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313 +T +ILFI GAF +V +P DLL Sbjct: 238 DTKNILFICGGAFDGIDKIIESRLDKRSLGFGAEIQSKKERNVGELMKEIQPQDLLKFGI 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR P+ L+SL++ ILT+ ++ L+ QY++LM+ + + L++T D+++A+AD Sbjct: 298 IPELVGRMPIITTLESLDRDQMMQILTEPKNALVKQYQKLMEYDDVELEYTHDALEAVAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 AV IGAR L+ ++E V+ + + SD V I+A V+ Sbjct: 358 RAVERG-----IGARGLRAILEEVMTQVMYDVPSDPTIAKVTINAACVK 401 >gi|284044103|ref|YP_003394443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Conexibacter woesei DSM 14684] gi|283948324|gb|ADB51068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Conexibacter woesei DSM 14684] Length = 428 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 6/113 (5%) Query: 4 TFNFS----PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57 TF+ + PR+I L+ Y++GQ+ AKR +++A+ N ++R Q+ D EL NIL Sbjct: 55 TFDLANLPKPRQIYDVLNEYVVGQEAAKRTLSVAVYNHYKRVQMMQSEDDDIELQKSNIL 114 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 115 LLGPTGCGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ +I Sbjct: 177 GIIYIDEVDKIARKADNPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFLTI 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILF+ GAF P DL Sbjct: 237 DTTNILFVCGGAFANLDKVIERRVGHQGVGFGATLQDKAARDLGNTFEECLPEDLVHYGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + L++++ ILT+ + L+ Q++ + +GI L F ++++ ++AD Sbjct: 297 IPEFIGRLPVMSAVHQLSRNELMTILTEPRNALVKQFQRFFQFDGIELVFADEALQSVAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E VL ++ F Sbjct: 357 KALERET-----GARGLRSIIEEVLLEVQF 381 >gi|27363511|ref|NP_759039.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio vulnificus CMCP6] gi|37679289|ref|NP_933898.1| ATP-dependent protease ATP-binding subunit [Vibrio vulnificus YJ016] gi|320156968|ref|YP_004189347.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio vulnificus MO6-24/O] gi|31340018|sp|Q8DG27|CLPX_VIBVU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46576400|sp|Q7MMG6|CLPX_VIBVY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27359627|gb|AAO08566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio vulnificus CMCP6] gi|37198032|dbj|BAC93869.1| ATP-dependent Clp protease, ATPase subunit [Vibrio vulnificus YJ016] gi|319932280|gb|ADV87144.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio vulnificus MO6-24/O] Length = 426 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PREI + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPREIRAHLDDYVIGQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 97/226 (42%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL ++ L QY L + EG L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTASLTELDEEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVID 401 >gi|189347416|ref|YP_001943945.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium limicola DSM 245] gi|189341563|gb|ACD90966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium limicola DSM 245] Length = 437 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 61/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EGS V K G Sbjct: 196 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 253 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 254 NINTKNILFICGGAFEGLDKLIAKRVSKSSMGFGSRVKNKQTGYDPEILRFVTQDDLHEY 313 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ R IL + ++ L+ QYK+L + +G+ L+FTE+++D + Sbjct: 314 GLIPEFIGRLPVISTLDPLDEKALRNILVEPKNALVKQYKKLFEMDGVELEFTEEALDKV 373 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 D+A++ + GAR L++V+E V+ DI F L+ Sbjct: 374 VDIAIDRGT-----GARALRSVLENVMIDIMFELPSLK 406 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 4/107 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELM--PKNILLVGPTG 63 SP+ I++ LD+Y++GQ AK+++++A+ N ++R Q + DE++ NILL+GPTG Sbjct: 80 SPKAIMASLDQYVVGQDIAKKSLSVAVYNHYKRIDSQEWSHESDEVVIEKSNILLIGPTG 139 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA L PF + T TE GYVG +VE I+ L+ + Sbjct: 140 TGKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHAS 186 >gi|312880129|ref|ZP_07739929.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas paucivorans DSM 12260] gi|310783420|gb|EFQ23818.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Aminomonas paucivorans DSM 12260] Length = 428 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKT 67 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R P D + +PK N+LLVGPTG GKT Sbjct: 75 PEEIKAFLDQYVIGQEQAKKVLSVAVYNHYQRISSPQDGDEVELPKSNVLLVGPTGCGKT 134 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 135 LLAQSLAKLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAA 177 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S+V K G + Sbjct: 187 GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLRILEGTLSNVPPKGGRKHPNQDFIQM 246 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF +P DL+ Sbjct: 247 DTRNILFICGGAFDGLEPIIARRTRRKVIGFGGELSSGQDAEERNALFRAIQPEDLMSYG 306 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L SL+++ IL + ++ L+ QY+++ EG+ L+FT +++ A+A Sbjct: 307 FIPEFVGRLPVVVPLDSLDENALTRILREPKNALLRQYQKVFSLEGVELEFTLEAVRAVA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + ++ + Sbjct: 367 RRALERKT-----GARALRSILESTMLELMY 392 >gi|237730415|ref|ZP_04560896.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter sp. 30_2] gi|283834243|ref|ZP_06353984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter youngae ATCC 29220] gi|226905954|gb|EEH91872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Citrobacter sp. 30_2] gi|291069763|gb|EFE07872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Citrobacter youngae ATCC 29220] Length = 424 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAQSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++DA+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFREEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|222085565|ref|YP_002544095.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] gi|221723013|gb|ACM26169.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] Length = 470 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + D EL NI+LVGPTG GK Sbjct: 113 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGK 172 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 173 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 225 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 226 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 285 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 286 DTTNILFICGGAFAGLDKIISARGEKTSIGFGAAVKGPDDRRVGEVLRELEPEDLVKFGL 345 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ L+ QY+ L + E + L+F ED++ +A Sbjct: 346 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIAR 405 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E VR Sbjct: 406 RAI-----VRKTGARGLRSIMEKILLDTMFDLPALEGVREVVISEEVVR 449 >gi|294083693|ref|YP_003550450.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum IMCC1322] gi|292663265|gb|ADE38366.1| ATP-dependent protease Clp [Candidatus Puniceispirillum marinum IMCC1322] Length = 420 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I++ LD Y+IGQ AKR +++A+ N ++R D E+ NILLVGPTG GK Sbjct: 64 TPADILAVLDGYVIGQSRAKRVLSVAVHNHYKRLANAGRTGDVEISKSNILLVGPTGCGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 124 TLLAQTLARMLDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 237 DTTNILFICGGAFAGLDKLIAGRDTGAGIGFGADVRDPDDRKIGELLGSLEPEDLIKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QY++L + + + L+F +D++ A+A Sbjct: 297 IPEFVGRLPVIATLEDLDEEALVRILTEPKNALVKQYEKLFEMDDVRLEFRDDALRAVAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ + GAR L+++ME +L + F ++ D++E VVI+ + V Sbjct: 357 KAIARKT-----GARGLRSIMENILMEPMFDIPTSGDIEE--VVINGDVV 399 >gi|282898111|ref|ZP_06306106.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9] gi|281197255|gb|EFA72156.1| ClpX, ATPase regulatory subunit [Raphidiopsis brookii D9] Length = 252 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 PREI + LD ++IGQ +AK+ +++A+ N ++R Q A+ EL NILL+GPTG G Sbjct: 64 PREIKNYLDDHVIGQDEAKKVLSVAVYNHYKRLAVAQGKAEDSVELQKSNILLIGPTGCG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 124 KTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 177 >gi|225455378|ref|XP_002272792.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 583 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 19/127 (14%) Query: 3 LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-DLRD----- 49 L NF +P+EI LD+++IGQ+ AK+ +++A+ N ++R Q+ PA D D Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218 Query: 50 ------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 278 Query: 104 RDLVDVA 110 L+ VA Sbjct: 279 YKLLMVA 285 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 295 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 354 Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311 +T ILFI GAF P D Sbjct: 355 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESS 414 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +L ++ +LT+ ++ L QYK++ + G+ L FT++ Sbjct: 415 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 474 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++ A++ N+ GAR L++++E +L + + D++ +IDA Sbjct: 475 ALRLISRKAMSKNT-----GARGLRSILENILMNAMYEIPDVRTGNDIIDA 520 >gi|15642920|ref|NP_227961.1| ATP-dependent protease ATP-binding subunit ClpX [Thermotoga maritima MSB8] gi|8134367|sp|Q9WXZ3|CLPX_THEMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|4980639|gb|AAD35239.1|AE001700_3 ATP-dependent Clp protease, ATPase subunit clpX [Thermotoga maritima MSB8] Length = 406 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI +ELD+YIIGQ+ AK+ +++A+ N ++R D D E+ N+LL+GPTG GK Sbjct: 57 TPAEIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKSNVLLIGPTGTGK 116 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA++ PF + T TE GYVG +VE ++ L++ A Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 59/232 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFIA GAF HV+ P DL Sbjct: 228 KVDTRNILFIAGGAFDGLEEIIKRRIQSTTMGFGAEIKSKKEMRLGEILKHVT-PDDLVQ 286 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L L++ D IL + ++ ++ QY++L + +G+ L+ T++++ Sbjct: 287 YGLIPEFVGRFPVIATLDDLSEDDLVRILKEPKNAVVRQYQKLFEIDGVKLEVTDEALRI 346 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 +A A+ + GAR L+ V E ++ D+ F +L+ V+ E V L Sbjct: 347 IARKALKRGT-----GARALKNVFEEMMIDMMFELPNLKNVEKVVITEEVAL 393 >gi|157146945|ref|YP_001454264.1| ATP-dependent protease ATP-binding subunit ClpX [Citrobacter koseri ATCC BAA-895] gi|166214770|sp|A8AK15|CLPX_CITK8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157084150|gb|ABV13828.1| hypothetical protein CKO_02722 [Citrobacter koseri ATCC BAA-895] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|83943112|ref|ZP_00955572.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] gi|83954270|ref|ZP_00962990.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] gi|83841307|gb|EAP80477.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. NAS-14.1] gi|83846120|gb|EAP83997.1| ATP-dependent protease ATP-binding subunit [Sulfitobacter sp. EE-36] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P++I LD Y+IGQ AKR +++A+ N ++R Q D+ EL NILL+GPTG Sbjct: 65 TPKDICDVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 177 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIIAARGKGSAMGFGADVRDQDARGIGEIFTDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTEPKNALVKQYQRLFEIEDTQLTFTDDALLAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L + F + T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEDILLNTMFDLPGMDSVTEVVVNEEAV 400 >gi|26989025|ref|NP_744450.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida KT2440] gi|38257486|sp|Q88KI9|CLPX_PSEPK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24983848|gb|AAN67914.1|AE016423_9 ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas putida KT2440] Length = 442 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 82 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 137 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 138 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 183 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 196 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 255 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 256 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 315 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + E + L+F D++ A+A Sbjct: 316 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYAKLFEMESVDLEFRSDALKAVA 375 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + ++ VVID Sbjct: 376 RKALERKT-----GARGLRSILEGVLLDTMYEIPSKKDVSKVVID 415 >gi|332669946|ref|YP_004452954.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas fimi ATCC 484] gi|332338984|gb|AEE45567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas fimi ATCC 484] Length = 425 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63 P+EI L++YIIGQ+ AKRA+++++ N ++R Q +D E+ NILLVGPTG Sbjct: 64 PKEIFDFLEQYIIGQESAKRALSVSVYNHYKRVQAGELGRGSDDHVEIAKSNILLVGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314 +T ++LFI +GAF RP DL +P Sbjct: 240 DTTNVLFIVAGAFSGLDDIIAARARKRVVGFGAPLLESHDEGDLFSEVRPEDLQKYGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++S ILT+ + L+ QY+ + + +G+ L+F ++++ A+AD A Sbjct: 300 EFIGRLPVVAAVSRLDQSALVRILTEPRNALVKQYQRMFQIDGVELEFEDEAVAAIADQA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + L T GAR L+ +ME VL+ + F Sbjct: 360 L-LRGT----GARGLRAIMEEVLQQVMF 382 >gi|270291413|ref|ZP_06197635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus acidilactici 7_4] gi|304385126|ref|ZP_07367472.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus acidilactici DSM 20284] gi|270280259|gb|EFA26095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pediococcus acidilactici 7_4] gi|304329320|gb|EFL96540.1| ATP-dependent Clp protease ATP-binding subunit [Pediococcus acidilactici DSM 20284] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 5/108 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD---ELMPKNILLVGPT 62 +P EIV LD+Y+IGQ++AK+ +++A+ N ++R + AD +D EL NI L+GPT Sbjct: 67 TPAEIVDYLDQYVIGQEEAKKTLSVAVYNHYKRINKMAQADAKDDGPELQKSNISLIGPT 126 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 GSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 174 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 56/210 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 183 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQ 242 Query: 291 INTDHILFIASGAF--------------------HVSR-------------PADLL---- 313 INT +ILFI GAF + S P DLL Sbjct: 243 INTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTSLDESKSLMQQVIPEDLLKFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L + D ILT+ ++ L+ QYK L+ +G+ L FT ++ A+A+ Sbjct: 303 IPEFIGRLPILTALEKLTEEDLVRILTEPKNALVKQYKALLALDGVELKFTPQALHAIAE 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ N+ GAR L++++E V+ DI F Sbjct: 363 QAISRNT-----GARGLRSIIENVMRDIMF 387 >gi|325684388|gb|EGD26557.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 417 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ +GAR L+T++E + DI + S SD+ + V+I E + Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397 >gi|310820095|ref|YP_003952453.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella aurantiaca DW4/3-1] gi|309393167|gb|ADO70626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 425 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD Y++GQ AK+ +++A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 68 PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 128 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 180 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 240 DTTNILFICGGAFGGLEQVIERRLGGRSLGFGADIQSKKQRNLTELLKHVE-PEDLLKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L+ L++ IL+ ++ L QY++L + +G+ L FT+ ++ A++ Sbjct: 299 MIPEFIGRLPIITALEELDEPALVNILSQPKNALTKQYRKLFELDGVTLKFTDGALKAIS 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + D+ + Sbjct: 359 TEAIRRKA-----GARGLRSILESAMLDVMY 384 >gi|15673133|ref|NP_267307.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis subsp. lactis Il1403] gi|13878442|sp|Q9CGE6|CLPX_LACLA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|12724114|gb|AAK05249.1|AE006347_7 ATP dependent Clp protease [Lactococcus lactis subsp. lactis Il1403] Length = 411 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64 +P+E+ L+ Y+IGQ+ AKRA+A+A+ N ++R A D EL NILL+GPTG Sbjct: 61 TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ + NI R R Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235 Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314 +T +ILFI GAF + A+ L+P Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L + D ILT+ ++ LI QYK+L+ + + L+F ++++ A+A A Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E V+ DI F +E T VI E V Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395 >gi|120610145|ref|YP_969823.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax citrulli AAC00-1] gi|326316314|ref|YP_004233986.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax avenae subsp. avenae ATCC 19860] gi|166214750|sp|A1TM61|CLPX_ACIAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120588609|gb|ABM32049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax citrulli AAC00-1] gi|323373150|gb|ADX45419.1| ATP-dependent Clp protease ATP-binding subunit clpX [Acidovorax avenae subsp. avenae ATCC 19860] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + EL NILL+GPTG Sbjct: 67 TPSEIKANLDNYVIGQEIAKRTLAVAVYNHYKRLRHKDKAGKDEVELAKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE I++ L+ V ++R Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQR 181 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADLL---- 313 +T +ILFI GAF S P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVKSKKQRSLTEVFTEIEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+ L Sbjct: 362 KALARKT-----GARGLRSILEQSL 381 >gi|300811984|ref|ZP_07092441.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497045|gb|EFK32110.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 417 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ +GAR L+T++E + DI + S SD+ + V+I E + Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397 >gi|284054391|ref|ZP_06384601.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira platensis str. Paraca] gi|291569894|dbj|BAI92166.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira platensis NIES-39] Length = 445 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 PREI + LD ++IGQ DAK+ +++A+ N ++R R EL NILL+GPTG Sbjct: 85 PREIKAYLDHHVIGQDDAKKVLSVAVYNHYKRLGFIPGHRQGDDQIELQKSNILLIGPTG 144 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 145 CGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG++ V + G I Sbjct: 201 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF-----------------------HVS------------RPADL---- 312 +T +ILF+ GAF V+ P DL Sbjct: 261 DTSNILFVCGGAFVGLEKIIEQRSGKKSMGFVRSGEEVTPEQKDTEALKGIEPNDLVKFG 320 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P+ L L++ ILT+ S L+ QY++L++ + + L+F D+I A+A Sbjct: 321 LIPELIGRIPMVAVLDPLDEKTLMSILTEPRSALVKQYQKLLRMDNVHLEFEPDAIQAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 381 REAFRRKT-----GARALRGIVEELMLDVMY 406 >gi|262277076|ref|ZP_06054869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha proteobacterium HIMB114] gi|262224179|gb|EEY74638.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [alpha proteobacterium HIMB114] Length = 423 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 6/116 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI S L+ Y+IGQ+ AK+ +++A+ N ++R ++ D+ EL NILL+GPTG Sbjct: 61 TPKEIFSILNEYVIGQKKAKQILSVAVHNHYKRLGHTEKSSNDV--ELAKSNILLIGPTG 118 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA++ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 119 CGKTLLAQTLAKILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 174 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 175 GIVYIDEVDKISRKTENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 234 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 235 DTTNILFIVGGAFAGIDKIISDRGQGSSIGFGAKIKDKIKKGVGELIKDVEPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L++ IL + +++L QY +L + EG+ L F +D++ A+A Sbjct: 295 IPEFIGRLPIISTLEDLDEESLVQILEEPKNSLTKQYSKLFEIEGVKLTFAKDALKAIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ V GAR L++++E VL + F Sbjct: 355 KAI-----VRKTGARGLRSIIEEVLLETMF 379 >gi|220916470|ref|YP_002491774.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954324|gb|ACL64708.1| ATPase AAA-2 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 367 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65 +PREI + L R++IGQ+ AKRA+AIA + +R + R+ + K N+LLVGPTG G Sbjct: 14 LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLVGPTGCG 73 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LAR+ PF + T+FTE GY G++VE +I +L+ A + + +++R Sbjct: 74 KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQR 127 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 52/223 (23%) Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289 GIVF+DE DKI R + G G + EGVQ+ LL L+EG V G Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187 Query: 290 --SINTDHILFIASGAFH--VSRPAD----------------------------LLPEIQ 317 ++T ILF+ +G F + D +L E Sbjct: 188 TVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARPGAAAARRRIRPRDLVEYGMLAEFL 247 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR PV V L L +LT ++ Q + L+ +G+ LD T+ ++ L A Sbjct: 248 GRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALHELVAFARER 307 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L+ V+E VL ++ F A + V++DA +VR Sbjct: 308 GA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVR 345 >gi|170767649|ref|ZP_02902102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia albertii TW07627] gi|170123137|gb|EDS92068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Escherichia albertii TW07627] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|73666835|ref|YP_302851.1| ATP-dependent protease ATP-binding subunit [Ehrlichia canis str. Jake] gi|123773382|sp|Q3YSQ2|CLPX_EHRCJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72393976|gb|AAZ68253.1| ClpX, ATPase regulatory subunit [Ehrlichia canis str. Jake] Length = 406 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62 T + P+EI LD Y+IGQ+ +K+ +++A+ N ++R + + E+ N+LL+GPT Sbjct: 56 TLDLKPKEIKKVLDEYVIGQEHSKKVLSVAVYNHYKRLSNSGVISEVEISKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 116 GSGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAA 163 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 105/226 (46%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 173 GIIYIDEVDKISRKSENTSITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 232 Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314 NTD+ILFI GAF VS+ D L+P Sbjct: 233 NTDNILFIFGGAFDGLDKIIESRHRGSSMGFEANVQKVSKNKDIFCYTEPEDLVKFGLIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L LN+S IL + +++L+ QYK+L + + I L F + ++ +A A Sbjct: 293 EFVGRIPVITSLSELNESTLCRILVEPKNSLVKQYKKLFEMDNIDLQFDDSALSEIAKKA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYV 419 V GAR L+ ++E +L D+ F S D+ VVI + V Sbjct: 353 -----AVRKTGARGLRAILEALLLDLMFESPGDVGINQVVISKKMV 393 >gi|329894938|ref|ZP_08270737.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma proteobacterium IMCC3088] gi|328922667|gb|EGG30002.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma proteobacterium IMCC3088] Length = 430 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 70 PKEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGQSSSDAVELGKSNILLVGPTGSGK 129 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 130 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 58/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311 +T +ILFI GAF +R A Sbjct: 243 DTSNILFICGGAFAGLDKVITNRSAKGGIGFNAEVKGKEQKKEFGEILFDLEPEDLVHYG 302 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L+ ILT+ ++ L QYK L + EG+ +DF ED + A+A Sbjct: 303 LIPEFVGRLPVIATLEELDVEALVQILTEPKNALTKQYKRLFEMEGVEVDFREDGLQAIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A+ + GAR L++++E VL D +S Sbjct: 363 KKAMERKT-----GARGLRSILEAVLLDSMYS 389 >gi|262042474|ref|ZP_06015633.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040178|gb|EEW41290.1| ATP-dependent Clp protease [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|302528950|ref|ZP_07281292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. AA4] gi|302437845|gb|EFL09661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. AA4] Length = 431 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDE---LMPKNILLVG 60 P +I L++YIIGQ DAK+ +A+A+ N ++R Q P D +DE L NIL++G Sbjct: 64 PADIHEFLEQYIIGQDDAKKTLAVAVYNHYKRIQADDKSGPKDSKDEPVELAKSNILMLG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 PTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ++LFI +GAF + P DL+ Sbjct: 243 DTTNVLFIVAGAFAGLEKIINERVGKRGLGFGAEIRTKAEIEGSDVFSETMPEDLIKFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L+K ILT + L+ QYK+L + + + L+FT+ +++A+AD Sbjct: 303 IPEFIGRLPVVATVNHLDKESLVSILTQPRNALVKQYKKLFEMDNVELEFTKTALEAIAD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 AV L T GAR L+ +ME VL+ + + ++ VVI + VR ++ Sbjct: 363 QAV-LRGT----GARGLRAIMEEVLQPVMYDIPSREDVAKVVITEQTVRENV 409 >gi|156836523|ref|XP_001642319.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM 70294] gi|156112819|gb|EDO14461.1| hypothetical protein Kpol_223p4 [Vanderwaltozyma polyspora DSM 70294] Length = 496 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 112/482 (23%), Positives = 206/482 (42%), Gaps = 132/482 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRW--------------RRQQLPADLRD----- 49 PR++ LD YIIGQ+++K+ +++A+ N + +RQ L L++ Sbjct: 29 PRDLKLFLDEYIIGQENSKKVLSVAVYNHYLRIHDRQRKLDLLKQRQTLEEQLKEKDSEI 88 Query: 50 -----------------------------------ELMPKNILLVGPTGVGKTAISRRLA 74 EL N+L+VGPTG GKT ++ LA Sbjct: 89 GNGSNISGSQLNSEAMAGLKNLRRQLESFKEDEDLELSKSNVLVVGPTGSGKTLLATTLA 148 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134 R+ P + T+ T+ GY+G +VE+ + L+ INA+ + Sbjct: 149 RVLEVPIAISDCTQLTQAGYIGDDVEKCVERLL--------------------INADFDV 188 Query: 135 LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLS 193 A G I EID ++A ++++I + D+ G G +L L Sbjct: 189 AKA------------------EKGIIVLDEID-KLAKSTNNIMSKDVSGEGVQQSLLKLI 229 Query: 194 ELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE-- 251 E K+ +SV++ D+S++ + +D +++ I+F+ Sbjct: 230 E----------GHKVEISVKRPVKVDKDDKSNK----TAMKKDETFVIDTSNILFMIMGA 275 Query: 252 ---FDKIVARDSGNGIGVSR--EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG---- 302 DK VA N +++ E Q +E T+Y I + I+ G Sbjct: 276 FVGLDKHVANRIKNMKELTKVHEKDQPKEQEEIENKERETEYKGIEE---VEISEGKKVP 332 Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 A +++ PADL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + K G Sbjct: 333 ALNLTTPADLVRFGIIPELVGRVPIITALQPLKEEDLYNILREPKNALLYQYEYIFKQFG 392 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L TE ++ +A++++ + GAR L+ +MER+L ++++ + V+++ + Sbjct: 393 VKLLVTEKALKKVAEISLKEGT-----GARGLRGIMERLLLNVNYECPGSEISYVLVNED 447 Query: 418 YV 419 V Sbjct: 448 TV 449 >gi|86140704|ref|ZP_01059263.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella blandensis MED217] gi|85832646|gb|EAQ51095.1| ATP-dependent protease ATP-binding subunit [Leeuwenhoekiella blandensis MED217] Length = 410 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT+HILF+A GAF +S+ P DL + Sbjct: 234 NTEHILFVAGGAFDGIERVISKRLNMQAVGFSASMSEDVIDRENLLKYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ R ILT+ ++ +I QY++L + + I + T ++D + + Sbjct: 294 PEIIGRLPVLTHMDPLDAKTLRAILTEPKNAIIKQYEKLFEMDDIEFEITGPALDYIVNK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L+++ E + D F + +D EY + Sbjct: 354 AIEYK-----LGARGLRSLCEAIFTDAMFDLPSSDLNSFKVDKEYAEFKL 398 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD YIIGQ K+ +A+A+ N ++R P D E+ NI++VG TG GKT Sbjct: 62 PKEIKDFLDEYIIGQDYTKKVMAVAVYNHYKRLLQPETEDDIEIQKSNIVMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +AR+ P V+ T TE GYVG +VE I+ L+ A + +++R Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAADYNLEKAQR 173 >gi|326406698|gb|ADZ63769.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis CV56] Length = 411 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64 +P+E+ L+ Y+IGQ+ AKRA+A+A+ N ++R A D EL NILL+GPTG Sbjct: 61 TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ + NI R R Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235 Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314 +T +ILFI GAF + A+ L+P Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L + D ILT+ ++ LI QYK+L+ + + L+F ++++ A+A A Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E V+ DI F +E T VI E V Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395 >gi|227877365|ref|ZP_03995436.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus JV-V01] gi|227863033|gb|EEJ70481.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus JV-V01] Length = 429 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI ELD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 72 PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 131 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 132 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 174 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 184 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 243 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 244 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 302 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ + + L FT+ ++ A+AD Sbjct: 303 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 +A+ N +GAR L+T++E + DI + + S+ +TV + + + H Sbjct: 363 LAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 408 >gi|327439425|dbj|BAK15790.1| ATP-dependent protease Clp, ATPase subunit [Solibacillus silvestris StLB046] Length = 423 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI++ L Y+IGQ+ AK+A+A+A+ N ++R + + D EL NI+L+GPTG GKT Sbjct: 64 PKEILNILGEYVIGQERAKKALAVAVYNHYKRINSNSKIDDVELSKSNIVLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTSNILFIVGGAFDGIETIIKRRQGEKVIGFASTQNKGIDEDASIMSQLIPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ LN ILT+ ++ L QY+++++ + + L+F +D++ +A + Sbjct: 296 PEFIGRLPVLATLEQLNVDALVQILTEPKNALAKQYQKMLELDDVELEFEDDALVEIAKL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L++++E + D+ F ++ K +I AE +R Sbjct: 356 AIERKT-----GARGLRSIIEATMLDVMFELPSREDIKKCIITAETIR 398 >gi|312961788|ref|ZP_07776286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas fluorescens WH6] gi|311284047|gb|EFQ62630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas fluorescens WH6] Length = 438 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 78 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 133 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 134 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 252 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 311 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411 >gi|203284514|ref|YP_002222254.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly] gi|203288048|ref|YP_002223063.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1] gi|238690569|sp|B5RMG2|CLPX_BORDL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238690576|sp|B5RPV8|CLPX_BORRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|201083957|gb|ACH93548.1| ATP-dependent Clp protease, subunit X [Borrelia duttonii Ly] gi|201085268|gb|ACH94842.1| ATP-dependent Clp protease, subunit X [Borrelia recurrentis A1] Length = 429 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R + + EL N+LLVGPTG G Sbjct: 64 TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFKGSKRETGVELEKSNVLLVGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++++LA PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTLLAKKLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 168 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G +I Sbjct: 178 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANVPPRGGRKHPYEETIAI 237 Query: 292 NTDHILFIASGAF------------------HVSRPAD-------------------LLP 314 NT ILFI GAF S D L+P Sbjct: 238 NTHDILFICGGAFVGLENIIKKRINRSFIGFSSSSCKDTGGDNSLKYLEMEDLIKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L L K D IL + E++++ QY + K + + L F +D++DA+A+ A Sbjct: 298 EFVGRLPVHSYLDKLEKKDLMKILVEPENSIVRQYYHMFKMDNVDLLFEKDALDAIAEEA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F S Q K V++ + V Sbjct: 358 MLKNT-----GARGLRSILEELLKDVMFEIPSSKQIKKVIVTKDSV 398 >gi|300114125|ref|YP_003760700.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus watsonii C-113] gi|299540062|gb|ADJ28379.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus watsonii C-113] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L++Y+IGQ AK+ +++A+ N ++R QL D EL NILL+GPTG GK Sbjct: 68 TPHEIRDILNQYVIGQSHAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYVDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 NT +ILFI GAF P DL+ Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEVLQAVEPEDLIKYG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+++ IL + ++ L Q+ L + E ++F ED++ A+A Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILREPKNALTKQFARLFEMENCKVEFREDALRAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ L + GAR L++++E VL D + + VVID V+ Sbjct: 361 TKAMELKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405 >gi|295692729|ref|YP_003601339.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus crispatus ST1] gi|295030835|emb|CBL50314.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus crispatus ST1] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI ELD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ + + L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A+ N +GAR L+T++E + DI + + S+ +TV + + + H Sbjct: 355 SAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 400 >gi|315650623|ref|ZP_07903683.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] gi|315487120|gb|EFU77442.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] Length = 427 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y+IGQ DAK+ +++A+ N ++R + + E+ NIL++GPTG GK Sbjct: 63 LKPKEIKKFLDDYVIGQDDAKKVLSVAVYNHYKRIKSKRNAEVEIQKSNILMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EGS SV + G Sbjct: 175 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGSIASVPPQGGRKHPQQELIQ 234 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF + P DL Sbjct: 235 IDTTNILFICGGAFDGLEKIVENRLSKGSIGFNSDVVEKNSKSIDELFKMVLPGDLTKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L L+K I+T ++ + QY++L + + + L+F + +++ +A Sbjct: 295 LIPEFIGRVPVTVSLDMLDKEALMQIMTKPKNAITKQYQKLFELDDVKLEFDDKAVEEVA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A+ IGAR L++++E V+ D+ + Sbjct: 355 NLALERK-----IGARGLRSILEGVMTDMMY 380 >gi|313893233|ref|ZP_07826810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. oral taxon 158 str. F0412] gi|313442586|gb|EFR61001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Veillonella sp. oral taxon 158 str. F0412] Length = 417 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I + LD Y+IGQ DAK ++A+A+ N ++R Q + D EL N+L +GPTG GK Sbjct: 62 TPRDIKAHLDEYVIGQDDAKISLAVAVYNHYKRLQTDNVVDDVELQKANVLFIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA++ PF + T TE GYVG +VE I+ ++ A +I R R Sbjct: 122 TLLAQTLAKMLEVPFAIADATSLTEAGYVGEDVENILLKIIQAADYDIARAER 174 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 105/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMLQI 234 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 235 DTTNILFICGGAFDGMDRVITKRTAKKTLGFGADVQRKEERNVSAILKDVVPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ ILT ++ L QY++++ +G+ L FTED+++ +AD Sbjct: 295 IPEFIGRLPVMVTLDQLDRDALIQILTKPKNALTKQYEKILSLDGVELTFTEDALEEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L+ ++E+V++ + F + E T I Sbjct: 355 EALQRKT-----GARGLRAIIEKVMKRVMFEVPSMPEVTKCI 391 >gi|291563764|emb|CBL42580.1| ATP-dependent Clp protease ATP-binding subunit ClpX [butyrate-producing bacterium SS3/4] Length = 433 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P+EI LD Y+IGQ +AK+ +++A+ N ++R ++ +D+ +L NIL++GPTG Sbjct: 65 LKPKEIKEFLDDYVIGQDEAKKVLSVAVYNHYKRITSKMESDV--DLQKSNILMLGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 GKT +++ LA+L G PF + T TE GYVG +VE I+ L+ A N Sbjct: 123 GKTYLAQTLAKLLGVPFAIADATTLTEAGYVGEDVENILLKLIQAADN 170 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 66/249 (26%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVE 280 D++ + IQ +N YGI+++DE DKI + I VS EGVQ+ LL ++E Sbjct: 156 DVENILLKLIQAADNDVSRAEYGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILE 215 Query: 281 GS--SVSTKYG---------SINTDHILFIASGAF------------------------- 304 G+ SV + G I+T +ILFI GAF Sbjct: 216 GTVASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLERIIESRLETSSIGFGAKIVDK 275 Query: 305 ---------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + P DL +PE GR PV V L L++ ILT+ ++ L+ QY+ Sbjct: 276 KNTDISKLLKQAMPQDLTKFGLIPEFVGRVPVMVSLDLLDEDSLVRILTEPKNALVKQYQ 335 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407 +L + + + L+FT D++ +A +AV + GAR L+ +ME V+ D + S S++ Sbjct: 336 KLFELDDVKLEFTPDAVHEIAHMAVERKT-----GARGLRAIMESVMMDTMYEVPSDSNV 390 Query: 408 QEKTVVIDA 416 TV DA Sbjct: 391 GICTVTKDA 399 >gi|281491647|ref|YP_003353627.1| ATP-dependent endopeptidase Clp ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis KF147] gi|281375365|gb|ADA64878.1| ATP-dependent endopeptidase Clp, ATP-binding subunit ClpX [Lactococcus lactis subsp. lactis KF147] Length = 411 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64 +P+E+ L+ Y+IGQ+ AKRA+A+A+ N ++R A D EL NILL+GPTG Sbjct: 61 TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ + NI R R Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235 Query: 292 NTDHILFIASGAFH--------------VSRPAD-----------------------LLP 314 +T +ILFI GAF + A+ L+P Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L + D ILT+ ++ LI QYK+L+ + + L+F ++++ A+A A Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E V+ DI F +E T VI E V Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAV 395 >gi|256842924|ref|ZP_05548412.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus crispatus 125-2-CHN] gi|256848701|ref|ZP_05554135.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus MV-1A-US] gi|262045891|ref|ZP_06018855.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus crispatus MV-3A-US] gi|293381819|ref|ZP_06627791.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus crispatus 214-1] gi|312978251|ref|ZP_07789994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus crispatus CTV-05] gi|256614344|gb|EEU19545.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus crispatus 125-2-CHN] gi|256714240|gb|EEU29227.1| ATP-dependent protease ATP-binding subunit [Lactobacillus crispatus MV-1A-US] gi|260573850|gb|EEX30406.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus crispatus MV-3A-US] gi|290921605|gb|EFD98635.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus crispatus 214-1] gi|310894770|gb|EFQ43841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus crispatus CTV-05] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI ELD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PVEIKKELDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKINADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ + + L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLSSKDLVRVLTEPKNALVKQYKKLLSLDDVNLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 +A+ N +GAR L+T++E + DI + + S+ +TV + + + H Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMYETPSEEDIETVEVTKDVITKH 400 >gi|227872171|ref|ZP_03990539.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus F0268] gi|227841984|gb|EEJ52246.1| ATP dependent protease ATP-binding subunit [Oribacterium sinus F0268] Length = 438 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 69/105 (65%), Gaps = 3/105 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P+EI LD Y+IGQ +AK+ +++A+ N ++R + + +RD ++ NIL++GPTG G Sbjct: 64 LKPKEIKDFLDEYVIGQDEAKKVLSVAVYNHYKR--ITSKVRDIDVQKSNILMIGPTGTG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQI 235 Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312 +T +ILFI GAF H+ +P DL Sbjct: 236 DTTNILFICGGAFDGLEHIIEKRIASGSIGFGAEIVEKNKDNYDDVLKQVQPEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L S + + ILT ++ L+ QY++L + +G+ L F++D++ A+A+ Sbjct: 296 IPEFIGRVPVDVELSSHDVDSLKRILTTPKNALVKQYQKLFEMDGVGLSFSDDAVTAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+++ME ++ +I + Sbjct: 356 KAVQRKT-----GARGLRSIMEGMMTEIMY 380 >gi|152968973|ref|YP_001334082.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893387|ref|YP_002918121.1| ATP-dependent protease ATP-binding subunit ClpX [Klebsiella pneumoniae NTUH-K2044] gi|330011534|ref|ZP_08307120.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella sp. MS 92-3] gi|166214780|sp|A6T5I1|CLPX_KLEP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150953822|gb|ABR75852.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545703|dbj|BAH62054.1| ATP-dependent protease ATP-binding subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534151|gb|EGF60786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella sp. MS 92-3] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|125624160|ref|YP_001032643.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis subsp. cremoris MG1363] gi|38257645|sp|Q8GJP6|CLPX_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|7546983|gb|AAF63738.1|AF236863_2 protease ClpX [Lactococcus lactis subsp. cremoris MG1363] gi|24935310|gb|AAN64303.1| ClpX protein [Lactococcus lactis subsp. cremoris MG1363] gi|124492968|emb|CAL97931.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactococcus lactis subsp. cremoris MG1363] gi|300070936|gb|ADJ60336.1| ATP-dependent protease ATP-binding subunit ClpX [Lactococcus lactis subsp. cremoris NZ9000] Length = 411 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64 +P+E+ L+ Y+IGQ+ AKRA+A+A+ N ++R A D EL NILL+GPTG Sbjct: 61 TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ + NI R R Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAER 175 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 235 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-----------------LLP 314 +T +ILFI GAF + + +D L+P Sbjct: 236 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L + D ILT+ ++ LI QYK+L+ + + L+F + ++ A+A A Sbjct: 296 EFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKKA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E V+ DI F +E T VI E V Sbjct: 356 IERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAV 395 >gi|317496811|ref|ZP_07955141.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] gi|316895823|gb|EFV17975.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] Length = 434 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 66/102 (64%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI LD+Y+IGQ +AK+ +++A+ N ++R + D EL NIL++GPTG GKT Sbjct: 68 PKEIKEFLDQYVIGQDEAKKVLSVAVYNHYKRILMGGDSDVELQKSNILMLGPTGSGKTL 127 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 128 LAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 169 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAFH------VSR----------------------------PAD-----L 312 +T +ILFI GAF SR P D L Sbjct: 239 DTSNILFICGGAFDGLEKIIESRIGKKSIGFGADVFGQKETDLGELLRQVLPEDFVKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L++ IL + +S L+ QY+ L + +G+ L F +D++ A+A Sbjct: 299 IPEFIGRVPVNVSLNPLDEGALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDALIAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+ +ME V+ D+ + S +D+ E + D Sbjct: 359 KALERKT-----GARGLRAIMEGVIMDLMYEIPSQTDVSECLITKD 399 >gi|206579207|ref|YP_002240082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella pneumoniae 342] gi|288936833|ref|YP_003440892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Klebsiella variicola At-22] gi|290510111|ref|ZP_06549481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella sp. 1_1_55] gi|238066657|sp|B5Y0U1|CLPX_KLEP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|206568265|gb|ACI10041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella pneumoniae 342] gi|288891542|gb|ADC59860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella variicola At-22] gi|289776827|gb|EFD84825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Klebsiella sp. 1_1_55] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFSLEGAELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + + + + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMDDVEKVVID 399 >gi|388977|emb|CAA80816.1| ATP-binding protein [Escherichia coli] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------HVS--------------------RPADLL-- 313 +T ILFI GAF H P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGHWCWRSGKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|154247519|ref|YP_001418477.1| ATP-dependent protease ATP-binding subunit ClpX [Xanthobacter autotrophicus Py2] gi|238686732|sp|A7ILC7|CLPX_XANP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154161604|gb|ABS68820.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Xanthobacter autotrophicus Py2] Length = 422 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T +ILFI GAF V+ P D Sbjct: 238 DTTNILFICGGAFAGLDKIISSRSKGSTSIGFQAKVAPPEDRRPGEVFREVEPEDLLKYG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ + IL++ ++ L+ QY+ L + E + L E+++ A+A Sbjct: 298 LIPEFIGRLPVLATLGDLDEEALKKILSEPKNALVKQYQRLFEMENVDLTIHEEALGAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E V Sbjct: 358 RKAIERKT-----GARGLRSIMESILLDTMFDLPGLEGVEEVVISREVV 401 >gi|213521160|gb|ACJ50517.1| ATP-dependent protease ATP-binding subunit [Pseudomonas fluorescens] Length = 438 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +A+A+ N ++R + RD EL NILL+GP Sbjct: 78 SPKEISGILDQYVIGQERAKKVLAVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 133 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 134 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 179 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 251 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 252 DTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVGESLREVEPDDLVKFG 311 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 312 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYGKLFEMEGVDLEFRTDALKSVA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + E VVID Sbjct: 372 KRALERKT-----GARGLRSILEGVLLDTMYEIPSQSEVSKVVID 411 >gi|212638446|ref|YP_002314966.1| ATP-dependent protease ATP-binding subunit ClpX [Anoxybacillus flavithermus WK1] gi|226706575|sp|B7GH25|CLPX_ANOFW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|212559926|gb|ACJ32981.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Anoxybacillus flavithermus WK1] Length = 420 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ +AK+A+++A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PKEIRDILDEYVIGQDEAKKALSVAVYNHYKRINSNSKIDDVELAKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADLL-----P 314 +T +ILFI GAF + R P DLL P Sbjct: 236 DTTNILFICGGAFDGLEPIIKRRLGKKVIGFSSDAQAEVEEKDLLSKVLPEDLLKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L++ IL ++ L+ QY+++++ + + L+F E+++ +A A Sbjct: 296 EFVGRLPVITSLQPLDEDALVDILVKPKNALVKQYEKMLELDDVELEFEEEALREIAKRA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + + GAR L++++E ++ D+ F S D+Q+ +I AE VR Sbjct: 356 IERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITAETVR 397 >gi|323705912|ref|ZP_08117483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacterium xylanolyticum LX-11] gi|323534710|gb|EGB24490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacterium xylanolyticum LX-11] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ AK+A+A+A+ N ++R D EL NIL++GPTG GKT Sbjct: 63 PKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 175 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 235 DTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEIQSKQEKKIGEILKNIMPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L SL+K ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 295 IPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415 A++ + GAR L++++E ++ D+ + +SD EK ++ + Sbjct: 355 KAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITE 394 >gi|300856722|ref|YP_003781706.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium ljungdahlii DSM 13528] gi|300436837|gb|ADK16604.1| ATP-dependent Clp protease, ATP-binding subunit [Clostridium ljungdahlii DSM 13528] Length = 429 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 174 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 233 Query: 291 INTDHILFIASGAFH-----VSR-----------------------------PADLL--- 313 INT +ILFI GAF + R P DLL Sbjct: 234 INTTNILFICGGAFDGIDNIIERRTRVSTLGFGAEIQSKKEKDIGKLLKDIMPGDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L++L++S IL + ++ LI QYK+L + + + L+F ED+++A++ Sbjct: 294 LIPEFVGRIPIIVTLEALDRSALVRILKEPKNALIKQYKKLFEFDDVELEFKEDALEAIS 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 D A+ N+ GAR L+ ++E ++D+ F +E V+ID V Sbjct: 354 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVIIDKNAV 397 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ+DAK+++++A+ N ++R D EL NILL+GPTG GKT Sbjct: 63 PVEIKNYLDQYVIGQEDAKKSLSVAVYNHYKRINSNNQNDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 >gi|218549894|ref|YP_002383685.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia fergusonii ATCC 35469] gi|226706591|sp|B7LME1|CLPX_ESCF3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|218357435|emb|CAQ90074.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia fergusonii ATCC 35469] gi|324114665|gb|EGC08633.1| ATP-dependent Clp protease [Escherichia fergusonii B253] gi|325498271|gb|EGC96130.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia fergusonii ECD227] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|229815147|ref|ZP_04445484.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM 13280] gi|229809377|gb|EEP45142.1| hypothetical protein COLINT_02193 [Collinsella intestinalis DSM 13280] Length = 468 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 11/114 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI L +Y++GQ+DAKRA+++A+ N +RR + + D EL NI Sbjct: 105 TPHEIYDALSQYVMGQEDAKRAMSVAVYNHYRRVLMGDTVEDSLGAHAVDEDVELAKSNI 164 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 165 LLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLITAA 218 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV G I Sbjct: 228 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 287 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF ++ P + Sbjct: 288 DTTNILFICGGAFVGLDKIISDRVGNQGIGFNSEIAGPTSKDENVLLRQVLPEDLNNFGM 347 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV ++L++ D ILT+ ++ ++ QY+ + EG+ L F D++ +A Sbjct: 348 IPEFIGRTPVITQTQALSEDDLVGILTEPKNAVVKQYRRMFSLEGVELVFEPDALHEIAR 407 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ E +L+ F Sbjct: 408 KALARKT-----GARGLRSICEELLQQTMF 432 >gi|295096775|emb|CBK85865.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKATSEKPNEGQLLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|115374874|ref|ZP_01462147.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|115368092|gb|EAU67054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 400 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD Y++GQ AK+ +++A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 43 PSEIKSILDEYVVGQDRAKKVLSVAVHNHYKRIESKVQMDDVELQKSNILLLGPTGSGKT 102 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 103 LLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 154 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 155 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQEFLQV 214 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 215 DTTNILFICGGAFGGLEQVIERRLGGRSLGFGADIQSKKQRNLTELLKHVE-PEDLLKFG 273 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L+ L++ IL+ ++ L QY++L + +G+ L FT+ ++ A++ Sbjct: 274 MIPEFIGRLPIITALEELDEPALVNILSQPKNALTKQYRKLFELDGVTLKFTDGALKAIS 333 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + D+ + Sbjct: 334 TEAIRRKA-----GARGLRSILESAMLDVMY 359 >gi|260222836|emb|CBA32802.1| ATP-dependent Clp protease ATP-binding subunit clpX [Curvibacter putative symbiont of Hydra magnipapillata] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P +I + LD Y+IGQ+ AKR +A+A+ N ++R + + EL NILL+GPTG Sbjct: 67 TPADIKANLDNYVIGQEPAKRTLAVAVYNHYKRLKHKEKAKKDDVELAKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF+ + T TE GYVG +VE I+ L+ Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVLKLL 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIESRTESSGIGFGAAVKSKQQRALTEVFKEVEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY +L+ EG L+ ++ A+A Sbjct: 302 IPELVGRMPVVATLAELTEEALVQILTEPKNALVKQYAKLLAMEGTELEIRPAALKAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+ L D + Sbjct: 362 RAL-----IRKTGARGLRSILEQSLIDTMY 386 >gi|148263973|ref|YP_001230679.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter uraniireducens Rf4] gi|189044135|sp|A5GFA1|CLPX_GEOUR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146397473|gb|ABQ26106.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter uraniireducens Rf4] Length = 417 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+ +A+A+ N ++R + A + E+ NILL+GPTG GKT Sbjct: 66 PQEIKEVLDEYVIGQNQAKKVLAVAVYNHYKRIEAMAKPGEVEMQKSNILLLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE II +L+ A Sbjct: 126 LLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILF+ GAF V + P DLL Sbjct: 238 DTTNILFVCGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ IL + ++ L+ QY++L + E + L FT+ S+ A+A Sbjct: 298 IPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFEMEHVKLKFTDGSLVAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S + K VVI + + Sbjct: 358 EALKRRT-----GARGLRSILENAMLDIMYEIPSQVMVKEVVISEDVI 400 >gi|304407482|ref|ZP_07389134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus curdlanolyticus YK9] gi|304343433|gb|EFM09275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus curdlanolyticus YK9] Length = 418 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD Y+IGQ+ AK+++A+A+ N ++R L D EL NILLVGPTG GKT Sbjct: 64 PKDIRGILDSYVIGQESAKKSLAVAVYNHYKRINSQNKLEDVELQKSNILLVGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLEQLIKRRIGKKVIGFNTAGDSQKELKPGEYLSMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL++ ++ L+ QY++L++ + + L+F +++A+A Sbjct: 296 IPEFVGRLPVISSLEPLDEETLVRILSEPKNALVKQYQKLLEMDNVKLEFEAGALEAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLEVMY 380 >gi|91203982|emb|CAJ71635.1| strongly similar to ATPase subunit [Candidatus Kuenenia stuttgartiensis] Length = 420 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 12/148 (8%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 +P EI +L+ YIIGQ+ AKR +A+A+ N ++R +D E+ NILL+GPTG Sbjct: 63 LTPMEINDKLNEYIIGQEKAKRTLAVAVYNHYKRLLTSNRGKDDEVEIEKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT ++R LA+L PF + T TE GYVG +VE I+ + ++R + D R Sbjct: 123 SGKTLLARTLAKLLNVPFAIADATTLTEAGYVGEDVENIL-------LGLLRNADFDVKR 175 Query: 124 EQASINAEERILDALVGKTATSN-TREV 150 Q I + I D + K A+S+ TR+V Sbjct: 176 AQQGIIYIDEI-DKIARKNASSSITRDV 202 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 61/220 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVST---------KYGSI 291 GI+++DE DKI +++ + I VS EGVQ+ LL ++EG S+V KY I Sbjct: 179 GIIYIDEIDKIARKNASSSITRDVSGEGVQQALLKILEGVVSNVPPQGGRKHPEQKYIQI 238 Query: 292 NTDHILFIASGAF------------------------HVSRPAD---------------- 311 +T +ILFI G F H + D Sbjct: 239 DTKNILFICGGTFSGVNEIIKRRIGKASIGFDTKKSTHETSDNDTSLGALLNKVEVEDLI 298 Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 ++ E GR PV V L L + D ++T+ ++ L+ QY++ + E L+FT++++ Sbjct: 299 EYGMIVEFMGRLPVIVSLLPLTEQDMIKVMTEPKNALVKQYQKFFEMENAKLEFTDEALM 358 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A++ +A+ + GAR L++V E + D + D + Sbjct: 359 AISKIALK-----KETGARALRSVFESFMLDPMYHLPDCK 393 >gi|325294781|ref|YP_004281295.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065229|gb|ADY73236.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfurobacterium thermolithotrophum DSM 11699] Length = 411 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD+Y++GQ++AK+ +++A+ N ++R D + EL NILL+GPTG GK Sbjct: 64 TPKEIKEFLDQYVVGQEEAKKVLSVAVYNHYKRIMSNEDTSEVELEKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLARSLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 167 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQQYIQI 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF HV P DL Sbjct: 237 DTSNILFICGGAFVGLEDIIAKRIGKGGMGFTADVKRNKLERSELLKHVE-PDDLVKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L + D IL + ++ L+ QY++L++ EG+ L+FT+ ++ +A Sbjct: 296 IPELIGRLPVIATLNELTEEDLIRILKEPKNALVKQYRKLLELEGVELEFTDGALREIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+ +ME+++ D+ F ++ K V+IDAE V+ Sbjct: 356 EAIRRKT-----GARGLRAIMEKLMTDVMFEVPHRKDIKKVIIDAEAVK 399 >gi|323359782|ref|YP_004226178.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium testaceum StLB037] gi|323276153|dbj|BAJ76298.1| ATP-dependent protease Clp, ATPase subunit [Microbacterium testaceum StLB037] Length = 422 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRDE---LMPKNILLVG 60 PREI S L+ Y++GQ+ AKRA+A+A+ N ++R + PA+ R E + NILL+G Sbjct: 66 PREIFSFLEEYVVGQEPAKRALAVAVYNHYKRVRSHGTLQPAEARAEEIDIAKSNILLLG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAA 175 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 58/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ++LFI +GAF + P DL +P Sbjct: 245 DTTNVLFIVAGAFAGLEEIISARVGKHGVGFGAPLQRKEDAPDLFSEALPEDLHKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT + L+ QY+ + + +G+ L+F ED++ A+AD+A Sbjct: 305 EFIGRLPVVASVSPLDQDALMEILTAPRNALVKQYQRMFELDGVQLEFDEDALRAIADLA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDL 407 V + GAR L+ ++E VL I F SA D+ Sbjct: 365 VARKT-----GARGLRAILEDVLGPIMFEVPSADDI 395 >gi|255011712|ref|ZP_05283838.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides fragilis 3_1_12] gi|313149547|ref|ZP_07811740.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides fragilis 3_1_12] gi|313138314|gb|EFR55674.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides fragilis 3_1_12] Length = 415 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 108/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239 Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313 NT +ILFI GAF HV SR P DL + Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 300 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVQLTFQPEVFEYIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D+ F +K + +Y + Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDVMFEIPSENQKEYEVTLDYAK 401 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ DAKR +A+++ N ++R L D D E+ NI++VG TG GK Sbjct: 68 PVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 170 >gi|241764197|ref|ZP_04762231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax delafieldii 2AN] gi|241366474|gb|EER60978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax delafieldii 2AN] Length = 421 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ AKR +A+A+ N ++R + A D EL NILL+GPTG Sbjct: 67 TPVEIKANLDNYVIGQDQAKRTLAVAVYNHYKRLRHKDKAHKDDVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE I++ L+ V ++R Sbjct: 127 GKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYEVERAQR 181 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADLL---- 313 +T +ILFI GAF S P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGASVKSKKQRSLTEVFTEIEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+ L Sbjct: 362 KALARKT-----GARGLRSILEQAL 381 >gi|296101560|ref|YP_003611706.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056019|gb|ADF60757.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSEKANEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|238060617|ref|ZP_04605326.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC 39149] gi|237882428|gb|EEP71256.1| ATP-dependent protease ATP-binding subunit [Micromonospora sp. ATCC 39149] Length = 431 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 P EI LD Y++GQ AK+A+A+A+ N ++R Q P D EL NILL+GP Sbjct: 64 PMEICQFLDNYVVGQDQAKKALAVAVYNHYKRIQAEAAGAPGSGSDAVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF-----------------------HVSR-----------PADLL---- 313 +T ++LFI GAF VS P D+L Sbjct: 242 DTTNVLFICGGAFAGLDQIIEARTGHGGTGFGARLRSVSERSTDDIFSQVMPEDMLKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +++SL++S ILT+ + L+ QY+ L + +G+ L+F +++A+AD Sbjct: 302 IPEFIGRLPVITNVRSLDRSALVRILTEPRNALVKQYQRLFELDGVELEFDPPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 362 QAM-LRGT----GARGLRAIMEEVLLSVMY 386 >gi|225028672|ref|ZP_03717864.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353] gi|224953982|gb|EEG35191.1| hypothetical protein EUBHAL_02951 [Eubacterium hallii DSM 3353] Length = 432 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 236 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PAD-----L 312 +T +ILFI GAF + + P D L Sbjct: 237 DTTNILFICGGAFDGLEKIIENRIGKKSIGFQAEIMEQRKKDVGVLLKQVLPEDFVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L+K ILT+ +S L+ QY++L + +G+ L FT+D+++A+A+ Sbjct: 297 IPEFIGRVPVNVSLNPLDKDALVKILTEPKSALVKQYQKLFEMDGVELKFTDDALEAIAE 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVV 413 A+ N+ GAR L+++ME V+ D+ ++ + DL E + Sbjct: 357 KAIARNT-----GARGLRSIMESVVMDLMYTIPSDDLVESCTI 394 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 63/104 (60%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+E+ + LD Y+IGQ +AK+ +++A+ N ++R EL NI+++GPTG GK Sbjct: 64 MKPKEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRILAGGSYDVELQKSNIIMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARQLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167 >gi|88800032|ref|ZP_01115602.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297] gi|88777158|gb|EAR08363.1| ATP-dependent protease ATP-binding subunit [Reinekea sp. MED297] Length = 392 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD Y+IGQ AK +++A+ N ++R Q D EL NILL+GPTG GKT Sbjct: 34 PSEIRSTLDEYVIGQDRAKMVLSVAVYNHYKRLQYGEANSDVELSKSNILLIGPTGSGKT 93 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ +ARL PF + T TE GYVG +VE II+ L+ Sbjct: 94 LLAETMARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 133 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 146 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 205 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312 +T +ILFI GAF V + P DL Sbjct: 206 DTANILFICGGAFAGLEKVIQNRTDKGGIGFNAEVKKKDDRKLGSVIANVEPEDLVKYGL 265 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L+++ ILT +++L+ QY++L + E + LD E ++ A+A+ Sbjct: 266 IPEFIGRLPVVATLTELDEAALVQILTTPKNSLVKQYQKLFEMESVELDIRESALKAVAN 325 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E VL D + Sbjct: 326 KAMERNT-----GARGLRSILENVLLDTMY 350 >gi|238919012|ref|YP_002932526.1| ATP-dependent protease ATP-binding subunit ClpX [Edwardsiella ictaluri 93-146] gi|238868581|gb|ACR68292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX, putative [Edwardsiella ictaluri 93-146] Length = 435 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + A EL NILL+GPTG GK Sbjct: 78 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDASNGVELGKSNILLIGPTGSGK 137 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 138 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 190 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 191 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 250 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 251 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 310 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV LK L+++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 311 GLIPEFIGRLPVVATLKELDEAALIQILQEPKNALTKQYQALFGLEGVDLEFRDEALTAI 370 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L D + ++ EK VV Sbjct: 371 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVV 410 >gi|296121985|ref|YP_003629763.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces limnophilus DSM 3776] gi|296014325|gb|ADG67564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Planctomyces limnophilus DSM 3776] Length = 427 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PREI + LD Y+IGQ KR +++A+ N ++R AD + E+ NILL+GPTG G Sbjct: 76 TPREITTHLDEYVIGQDRTKRLLSVAVYNHYKRLTAAADADNDIEIEKSNILLIGPTGSG 135 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LARL PF + T TE GYVG +VE ++ L+ A Sbjct: 136 KTLLAKTLARLLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 180 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 190 GIVFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQI 249 Query: 292 NTDHILFIASGAF-------------------------HVSRPADLL------------- 313 +T +ILFI G F +R LL Sbjct: 250 DTSNILFICGGTFVGLEDIIAKRLGKKTIGFGGSSVDDQKTRSGKLLAHACTDDVIEFGM 309 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ D IL++ +++L+ QY++ + E L+ T +++ +A Sbjct: 310 IPELVGRLPVVSALSPLDEQDLVRILSEPKNSLVKQYQKFFQMENAELEVTSEALLEIAR 369 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A D GAR L++V+E + ++ + D++ K V+ E VR Sbjct: 370 IA-----KAKDTGARGLRSVVEESMFEVMYELPDMEAGKKYVLTPEVVR 413 >gi|197335469|ref|YP_002155558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio fischeri MJ11] gi|238690274|sp|B5FBZ9|CLPX_VIBFM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|197316959|gb|ACH66406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio fischeri MJ11] Length = 428 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR I LD Y+IGQ+ AK+ +A+A+ N ++R + +D EL NILL+GPTG G Sbjct: 69 TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 170 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 59/207 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNEATIGDLFKQIEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L EG L+F ED++ A+ Sbjct: 303 GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVL 397 A A++ + GAR L++++E VL Sbjct: 363 AKKAMDRKT-----GARGLRSILEAVL 384 >gi|145298872|ref|YP_001141713.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas salmonicida subsp. salmonicida A449] gi|226706574|sp|A4SM43|CLPX_AERS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|142851644|gb|ABO89965.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas salmonicida subsp. salmonicida A449] Length = 424 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + ++ EL NILL+GPTG GK Sbjct: 66 TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSSEAGGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGADVKSKNARATLSENFAKVEPEDLIKY 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+++ IL + ++ L QY L EG+ L+F +D+++A+ Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + L+ VVID ++ Sbjct: 359 AHKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404 >gi|331090537|ref|ZP_08339390.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 2_1_46FAA] gi|330405880|gb|EGG85408.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 2_1_46FAA] Length = 415 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ +AK+ +++A+ N ++R DL EL NIL++GPTG GK Sbjct: 62 LKPEEMKAFLDDYVIGQDEAKKVLSVAVYNHYKRIMAEKDLGVELHKSNILMLGPTGCGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 122 TLLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 165 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 174 YGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPHQELIQ 233 Query: 291 INTDHILFIASGAFH----------------------------VSR------PADL---- 312 I+T +ILFI GAF + R P DL Sbjct: 234 IDTTNILFICGGAFEGIDKIIETRIDKKSIGFNAEIAEKHEYDIDRLLGQVLPQDLVKFG 293 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV V L+ L++ ILT+ +S ++ QY++L++ +G+ L F ++++ +A Sbjct: 294 LIPELVGRVPVTVSLEMLDEEALIRILTEPKSAIVKQYQKLLELDGVELVFDKEALVEIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ + GAR L+ +ME+++ D + Sbjct: 354 KTSLARKT-----GARGLRAIMEKIMMDTMY 379 >gi|299783051|gb|ADJ41049.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus fermentum CECT 5716] Length = 290 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 60/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 52 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 111 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 112 DTKNILFIVGGAFDGIETIVKERLGDKTIGFGTDSKEINDVTEKNILQHVI-PEDLLKFG 170 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+++D ILT+ ++ L+ QY+EL++ +G L FT ++ A+A Sbjct: 171 LIPEFIGRLPVMTALEKLDEADLVRILTEPKNALVKQYQELIRLDGAELHFTAGALQAMA 230 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422 +A++ N+ GAR L++++E V+ DI F Q+ VVI+ E V H Sbjct: 231 KMAIDRNT-----GARGLRSIIEDVMRDIMFDLPSRQDVVKVVINKECVTKH 277 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 1 MAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 42 >gi|325125526|gb|ADY84856.1| ATP-dependent protease [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 417 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ +GAR L+T++E + DI + S SD+ + V+I E + Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397 >gi|259416323|ref|ZP_05740243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter sp. TrichCH4B] gi|259347762|gb|EEW59539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Silicibacter sp. TrichCH4B] Length = 395 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P++I LD Y+IGQ AKR +++A+ N ++R Q+ D+ EL NILL+GPTG Sbjct: 65 TPKDICDVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKAGNDI--ELSKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 CGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQR 178 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 52/171 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 239 DTTNILFICGGAFAGLDRIIKQRGKGSAMGFGADVRDESDAGVGETFKDLEPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 PE GR PV L+ L++ ILT ++ L+ QY+ L + E LDFT Sbjct: 299 IPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFT 349 >gi|304316360|ref|YP_003851505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777862|gb|ADL68421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 424 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ AK+A+A+A+ N ++R D EL NIL++GPTG GKT Sbjct: 63 PKEIKEFLDQYVIGQDKAKKALAVAVYNHYKRINSRVKSDDVELQKSNILMLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 175 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 235 DTTNILFIVGGAFDGIEKIIESRIGKKSLGFGSEVQSKQEKKIGEILKNIMPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L SL+K ILT+ ++ L QY++L + +G+ L+F + ++ +A Sbjct: 295 IPEFIGRLPIVVTLDSLDKDALIRILTEPKNALTKQYEKLFELDGVKLEFDKKALSVIAQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415 A++ + GAR L++++E ++ D+ + +SD EK ++ + Sbjct: 355 KAIDRKT-----GARGLRSILEELMLDVMYEIPSSDNIEKCIITE 394 >gi|167754485|ref|ZP_02426612.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216] gi|167659110|gb|EDS03240.1| hypothetical protein ALIPUT_02781 [Alistipes putredinis DSM 17216] Length = 429 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64 P EI LD+Y+IGQ DAKR +++A+ N ++R + E L NILLVGPTG Sbjct: 79 LKPNEIKEFLDQYVIGQDDAKRYMSVAVYNHYKRLLHASGEASEVELDKSNILLVGPTGT 138 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R +A+L PF V+ T TE GYVG +VE I+ L+ VA Sbjct: 139 GKTLMARTIAKLLNVPFTIVDATVLTEAGYVGEDVESILSRLLQVA 184 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290 GIVF+DE DKI AR S N VS EGVQ+ LL ++EG+ V+ ++ Sbjct: 194 GIVFIDEIDKI-ARKSDNPSLTRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQQFVQ 252 Query: 291 INTDHILFIASGAF------------------------HVSR--------PADL-----L 313 ++T +ILFI GAF V R P DL + Sbjct: 253 VDTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRMNADSVDRNNLMQYLMPQDLRSFGLI 312 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +++ L + R ILT ++ +I QY++L + +G+ L F ++ +D + D Sbjct: 313 PELVGRLPVLTYMEPLGREALRSILTQPKNAIIKQYEKLFEMDGVKLVFDDEVLDYIVDK 372 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E ++ D F E+ + Y R Sbjct: 373 AIEYR-----LGARGLRSICEAIMMDTMFDIPSSGERRFEVTLPYAR 414 >gi|116251455|ref|YP_767293.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. viciae 3841] gi|241204074|ref|YP_002975170.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM1325] gi|166214809|sp|Q1MIM6|CLPX_RHIL3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115256103|emb|CAK07184.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. viciae 3841] gi|240857964|gb|ACS55631.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 425 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + EL NI+LVGPTG GK Sbjct: 68 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGASVKSQDDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L+F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E VR Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404 >gi|225850860|ref|YP_002731094.1| ATP-dependent protease ATP-binding subunit ClpX [Persephonella marina EX-H1] gi|225645554|gb|ACO03740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Persephonella marina EX-H1] Length = 411 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI +LD Y+IGQ+ AK+ +++A+ N ++R P D EL NILL+GPTG Sbjct: 60 TPAEIKKKLDEYVIGQERAKKILSVAVYNHYKRIFHPGRYTDDDVELEKSNILLIGPTGS 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LA++ PF + T TE GYVG +VE I+ LV A Sbjct: 120 GKTLLARTLAKILNVPFAIADATNITEAGYVGEDVESILVRLVQAA 165 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GI+++DE DKI A+ SG ++R EGVQ+ LL ++EG+ + ++ Sbjct: 175 GIIYIDEIDKI-AKKSGENPSITRDVSGEGVQQALLKILEGTVANIPPQGGRKHPHQEFI 233 Query: 290 SINTDHILFIASGAF---------HVSRPA-----------------------------D 311 ++T +ILFI GAF + + + Sbjct: 234 QLDTSNILFILGGAFVGLEDIIKQRIGKKSIGFATQIRSKEEEEGNILSKVRVEDLIKFG 293 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ +LT+ ++ LI QYK+L+ +G+ L+FT+D+I A+A Sbjct: 294 LIPEFIGRIPVVATLDELDEDALVRVLTEPKNALIKQYKKLLSMDGVELEFTDDAIRAIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A++ + GAR L+ ++E ++ D+ + Q K VVID + V Sbjct: 354 KEAIDRKT-----GARGLRAIVEEIMLDVMYEIPQAQGVKKVVIDKDVV 397 >gi|261341039|ref|ZP_05968897.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter cancerogenus ATCC 35316] gi|288316904|gb|EFC55842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter cancerogenus ATCC 35316] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKSTSEKPNEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|116062107|dbj|BAF34686.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Aeromonas veronii] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + ++ EL NILL+GPTG GK Sbjct: 66 TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRTGSESGGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQELSQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DLL Sbjct: 239 DTSKILFICGGAFAGLDKVLEQRSVKGTGIGFGAEVKSKSAKATLSESFAKVEPEDLLKY 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+++ IL + ++ L QY L EG+ L F +D+++A+ Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELQFRDDALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + L VVID ++ Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404 >gi|59711404|ref|YP_204180.1| ATP-dependent protease ATP-binding subunit [Vibrio fischeri ES114] gi|75354361|sp|Q5E6Q4|CLPX_VIBF1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|59479505|gb|AAW85292.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Vibrio fischeri ES114] Length = 428 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR I LD Y+IGQ+ AK+ +A+A+ N ++R + +D EL NILL+GPTG G Sbjct: 69 TPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNILLIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 129 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 170 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 59/207 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 183 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKENEATIGDLFKQIEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L EG L+F ED++ A+ Sbjct: 303 GLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALKAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVL 397 A A++ + GAR L++++E VL Sbjct: 363 AKKAMDRKT-----GARGLRSILEAVL 384 >gi|116513869|ref|YP_812775.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093184|gb|ABJ58337.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 417 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 56/211 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 A+ +GAR L+T++E + DI + A Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRA 381 >gi|315924139|ref|ZP_07920365.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622541|gb|EFV02496.1| ATP-dependent Clp protease ATP-binding subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 431 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD Y+IGQ +AK+A+++A+ N ++R D E+ NILL+GPTG G Sbjct: 64 TPKEIKAALDTYVIGQDEAKKALSVAVYNHYKRINAAETDDDDVEIQKSNILLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAA 168 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 178 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQL 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T ILFI GAF V + P D+L Sbjct: 238 DTKDILFICGGAFDGIEEVIAKRLEKGSIGFDATIRSRVEKEDDAMMEKIVPHDILKYGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV LK L++ ILT+ ++ L+ Q+++L++ E + L F +++ +A Sbjct: 298 IPEFIGRIPVIATLKHLDEEALINILTEPKNALVKQFQKLLRLEDVDLTFEPEALSEIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+ ++ERV+ D+ + S SD+ T+ D Sbjct: 358 KAMATKT-----GARGLRGIIERVMMDLMYEVPSESDISHITITKD 398 >gi|213419495|ref|ZP_03352561.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 265 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 239 DTSKILFICGGAF 251 >gi|104773862|ref|YP_618842.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422943|emb|CAI97605.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 417 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQIDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ +GAR L+T++E + DI + S SD+ + ++I E + Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--IIITPETI 397 >gi|304319807|ref|YP_003853450.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] gi|303298710|gb|ADM08309.1| ATP-dependent protease ATP-binding subunit [Parvularcula bermudensis HTCC2503] Length = 437 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+ I S LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 79 SPQHIHSVLDDYVIGQAYAKRVLSVAVHNHFKRLNHAQKNSDVELAKSNILLVGPTGSGK 138 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 139 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQR 191 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 192 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 251 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 252 DTTNILFIVGGAFAGLDKVIQSRGDGASIGFNAEVKELEDRRIGDVLREVEPEDLLKFGL 311 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E + L F +++ A+A Sbjct: 312 IPEFIGRLPVIATLEDLDEEALVQILTSPKNALVKQYQRLFEMEDVKLTFKPEALVAVAK 371 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI+AE V Sbjct: 372 KAITRKT-----GARGLRSIMEGILLDTMFDLPTLENVEEVVINAEVV 414 >gi|253999169|ref|YP_003051232.1| ATP-dependent protease ATP-binding subunit ClpX [Methylovorus sp. SIP3-4] gi|253985848|gb|ACT50705.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus sp. SIP3-4] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P+EI + LD+Y+IGQ AK+ +A+A+ N ++R Q D + E+ NIL++GPTG Sbjct: 64 TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PF+ + T TE GYVG +VE I++ L+ Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 166 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 238 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 239 DTTNILFICGGAFDGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P L+SL++ IL + ++ L QY +L K EG+ L+F E ++ ++ Sbjct: 299 LIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFRESALRLIS 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A+ + GAR L+++ME L +I F + T VV+D VR Sbjct: 359 KKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403 >gi|269138348|ref|YP_003295048.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda EIB202] gi|267984008|gb|ACY83837.1| ATP-dependent protease Clp, ATPase subunit [Edwardsiella tarda EIB202] gi|304558380|gb|ADM41044.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Edwardsiella tarda FL6-60] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV LK L+++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L D + ++ EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVV 398 >gi|237712736|ref|ZP_04543217.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1] gi|262408127|ref|ZP_06084674.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_22] gi|294645125|ref|ZP_06722850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides ovatus SD CC 2a] gi|294809723|ref|ZP_06768410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides xylanisolvens SD CC 1b] gi|229447213|gb|EEO53004.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D1] gi|262353679|gb|EEZ02772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_22] gi|292639549|gb|EFF57842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides ovatus SD CC 2a] gi|294443057|gb|EFG11837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides xylanisolvens SD CC 1b] Length = 414 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y ++ + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVTLDYAKMQL 403 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178 >gi|209548851|ref|YP_002280768.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238066658|sp|B5ZY09|CLPX_RHILW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209534607|gb|ACI54542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 425 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P++I+ LD Y+IGQ+ AK+ +++A+ N ++R + EL NI+LVGPTG GK Sbjct: 68 TPQDIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 180 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 241 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ +A Sbjct: 301 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E VR Sbjct: 361 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 404 >gi|134103754|ref|YP_001109415.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|291007720|ref|ZP_06565693.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|133916377|emb|CAM06490.1| putative Clp protease ATP-binding subunit [Saccharopolyspora erythraea NRRL 2338] Length = 432 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PREI + LD+Y++GQQ AK+A+++A+ N ++R Q R EL NILL+ Sbjct: 66 PREIDAFLDQYVVGQQGAKQALSVAVYNHYKRIQPETTGRGRHATKEEPVELGKSNILLI 125 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 GPTGCGKTHLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAA 176 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 60/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVST-----------KYGS 290 GI+++DE DK V+R S N VS EGVQ+ LL ++EG++VS ++ Sbjct: 186 GILYIDEVDK-VSRKSDNPSTTRDVSGEGVQQALLKILEGTTVSVPPQGGRKHPHQEFIQ 244 Query: 291 INTDHILFIASGAFHV----------------------------------SRPADL---- 312 I+T ++LF+ GAF +RP DL Sbjct: 245 IDTTNVLFVLGGAFAGLEKIVEQRTGRSGIGFGAEVRSRQQRQSEAALTDARPDDLVKFG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L+ L++ ILT+ + L+ QY++L + + + L FT+D+++A+A Sbjct: 305 LIPELVGRLPVISTLQPLDRETLVRILTEPRNALVKQYQKLFRMDDVELRFTDDAVEAIA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHI 423 + A+ L T GAR + ++E VL D+ + + T VV+D +V H+ Sbjct: 365 EQAM-LRGT----GARATRAILEEVLLDLMYEVPSRDDVTEVVVDRGFVLDHV 412 >gi|323489955|ref|ZP_08095176.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus donghaensis MPA1U2] gi|323396251|gb|EGA89076.1| ATP-dependent protease ATP-binding subunit ClpX [Planococcus donghaensis MPA1U2] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI+ L+ Y+IGQ+ AK+++A+A+ N ++R + + D EL NI+L+GPTG GKT Sbjct: 64 PKEILDILNGYVIGQEKAKKSLAVAVYNHYKRVNSNSKIDDVELSKSNIVLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T ++LFI GAF + R P DLL Sbjct: 236 DTTNVLFIVGGAFDGVDQIIKRRLGNKIIGFGADPNKEEIDEKSLLSQLIPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT+ ++ LI QY+++M+ +G+ L F +++ A+A + Sbjct: 296 PEFIGRLPVLASLEQLDEKALVEILTEPKNALIKQYQKMMELDGVKLTFDPEALVAIARL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + ++ F Sbjct: 356 AIERKT-----GARGLRSIIENTMLEVMF 379 >gi|295399414|ref|ZP_06809396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus thermoglucosidasius C56-YS93] gi|312110027|ref|YP_003988343.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus sp. Y4.1MC1] gi|294978880|gb|EFG54476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus thermoglucosidasius C56-YS93] gi|311215128|gb|ADP73732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. Y4.1MC1] Length = 420 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ +AK+++A+A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 61/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGADVQQSEVDEKNLLSKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ ++ QY+++++ +G+ L+F ED++ +A Sbjct: 296 PEFIGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEDALREIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E ++ D+ F S D+Q+ +I E VR Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITVETVR 398 >gi|332981497|ref|YP_004462938.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella australiensis 50-1 BON] gi|332699175|gb|AEE96116.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mahella australiensis 50-1 BON] Length = 428 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 5/114 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI + LD+Y++GQ+DAK+ +++A+ N ++R + +D++ EL NI+++GPTG G Sbjct: 63 PAEIKAILDQYVVGQEDAKKTLSVAVYNHYKR--INSDVKSDGVELQKSNIIMLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 121 KTLLAQTLARILNVPFAMADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 174 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFDGIDKIIQNRLGEKAMGFGAEIKTKKEQDVGELLKHI-MPQDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR P+ V L +L+K ILT+ ++ LI QY++L + +G+ L+F E +I A+A Sbjct: 294 LIPEMVGRLPIIVTLHALDKKALMTILTEPKNALIKQYQKLFEMDGVTLEFEEAAIAAVA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 D A+ N+ GAR L+ ++E ++ +I + S D+ EK V+ + Sbjct: 354 DKALERNT-----GARGLRAILEDIMLNIMYEIPSREDI-EKCVITE 394 >gi|317047176|ref|YP_004114824.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp. At-9b] gi|316948793|gb|ADU68268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp. At-9b] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S+ P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + +++ + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLETMYDLPSMEDVEKVVID 399 >gi|313201271|ref|YP_004039929.1| ATP-dependent clp protease, ATP-binding subunit clpx [Methylovorus sp. MP688] gi|312440587|gb|ADQ84693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylovorus sp. MP688] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P+EI + LD+Y+IGQ AK+ +A+A+ N ++R Q D + E+ NIL++GPTG Sbjct: 64 TPKEICNILDQYVIGQTQAKKNLAVAVYNHYKRLDQSATKDKDEVEIAKSNILVIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PF+ + T TE GYVG +VE I++ L+ Sbjct: 124 GKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 166 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQL 238 Query: 292 NTDHILFIASGAF--------------------------------HVSR---PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 239 DTTNILFICGGAFDGLDKIIRRRSEKGGIGFGAEVKSKDDLREVGEVLREVEPEDLIKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P L+SL++ IL + ++ L QY +L K EG+ L+F E ++ ++ Sbjct: 299 LIPEFVGRLPAIATLESLDEDALMKILVEPKNALTKQYAKLFKMEGVELEFRESALRLIS 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A+ + GAR L+++ME L +I F + T VV+D VR Sbjct: 359 KKALERKT-----GARGLRSIMEHALLEIMFDLPSISNLTKVVVDEGVVR 403 >gi|311280665|ref|YP_003942896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter cloacae SCF1] gi|308749860|gb|ADO49612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterobacter cloacae SCF1] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSEKANEGELLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|304413825|ref|ZP_07395242.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Regiella insecticola LSR1] gi|304283545|gb|EFL91940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Regiella insecticola LSR1] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+A+A+A+ N ++R D + EL NILL+GPTG G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKALAVAVYNHYKRL-CNGDSNNGVELGKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYNVEKAQR 178 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-------------------------VSRPAD--------------- 311 +T ILFI GAF +P++ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRLNTGTGIGFGAIVKSVCEKPSEGELLRQAEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L LN+ IL + ++ L QY+ L E + L+FTE+++ A+ Sbjct: 299 GLIPEFIGRLPVVTTLTELNQEALIKILKEPKNALTKQYQALFNLESVELEFTEEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ VV+D Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEKVDKVVVD 399 >gi|116491694|ref|YP_811238.1| ATP-dependent protease ATP-binding subunit [Oenococcus oeni PSU-1] gi|116092419|gb|ABJ57573.1| ATP-dependent protease Clp, ATPase subunit [Oenococcus oeni PSU-1] Length = 421 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+V L+ Y+IGQ++AK+ +A+A+ N ++R + L EL NILL+GPTG G Sbjct: 66 TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE ++ L+ A V +++R Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV + Y + Sbjct: 180 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 239 Query: 292 NTDHILFIASGAF---------------------------------HVSRPAD------- 311 +T +ILFI GAF +++ D Sbjct: 240 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQFTDQDVIKFG 299 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L + D ILT ++ L+ QYK L+ +G+ LDF ++ +A Sbjct: 300 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLDFDPKALKEMA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A++ S GAR L+++ME +++ + Sbjct: 360 KIAIDKKS-----GARGLRSIMESTMKETMY 385 >gi|294501428|ref|YP_003565128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus megaterium QM B1551] gi|295706776|ref|YP_003599851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus megaterium DSM 319] gi|294351365|gb|ADE71694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus megaterium QM B1551] gi|294804435|gb|ADF41501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus megaterium DSM 319] Length = 421 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ+DAK+++++A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PKEIRDILDEYVIGQEDAKKSLSVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGSETKQQDFTEKELLAKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ ILT ++ L+ QY+++++ + + L+F ++++ ++ Sbjct: 296 PEFIGRLPVTASLVPLDEEALVEILTKPKNALVKQYQKMLELDDVELEFEDEALVEISKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A+ + GAR L++++E ++ D+ F + T +I E VR Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDITKCIITGETVR 398 >gi|294635325|ref|ZP_06713822.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella tarda ATCC 23685] gi|291091301|gb|EFE23862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Edwardsiella tarda ATCC 23685] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGAKVKGKADKASESELLGQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV LK L+++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLKELDEAALIQILKEPKNALTKQYQALFGLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ + GAR L++++E L D + ++ + VV+D + + Sbjct: 359 AKKAMARKT-----GARGLRSIVEGTLLDTMYDLPSMENVEKVVVDEQVI 403 >gi|239827924|ref|YP_002950548.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp. WCH70] gi|259491261|sp|C5D5L4|CLPX_GEOSW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239808217|gb|ACS25282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. WCH70] Length = 421 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ +AK+++A+A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 61/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGLEPIIKRRLGKKVIGFGADIQQSDVDEKNLLSKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ ++ QY+++++ +G+ L+F E+++ +A Sbjct: 296 PEFVGRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEEALREIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E ++ D+ F S D+Q+ +I E VR Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQK--CIITVETVR 398 >gi|290891315|ref|ZP_06554376.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429] gi|290478961|gb|EFD87624.1| hypothetical protein AWRIB429_1766 [Oenococcus oeni AWRIB429] Length = 421 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+V L+ Y+IGQ++AK+ +A+A+ N ++R + L EL NILL+GPTG G Sbjct: 66 TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE ++ L+ A V +++R Sbjct: 126 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV + Y + Sbjct: 180 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 239 Query: 292 NTDHILFIASGAFH---------------------------------VSRPAD------- 311 +T +ILFI GAF +++ D Sbjct: 240 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFDKKNPLTQFTDQDVIKFG 299 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L + D ILT ++ L+ QYK L+ +G+ LDF ++ +A Sbjct: 300 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLDFDPKALKEMA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A++ S GAR L+++ME +++ + Sbjct: 360 KIAIDKKS-----GARGLRSIMESTMKETMY 385 >gi|77919286|ref|YP_357101.1| ATP-dependent protease ATP-binding subunit ClpX [Pelobacter carbinolicus DSM 2380] gi|123574093|sp|Q3A3X6|CLPX_PELCD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|77545369|gb|ABA88931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelobacter carbinolicus DSM 2380] Length = 416 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ+ AK+ +++A+ N ++R ++ D D E+ NIL++GPTG GKT Sbjct: 66 PSEIKDALDEYVIGQEKAKKILSVAVYNHYKRVEMVQDGDDIEIQKSNILMLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 126 LLAQTLAKLLNVPFAIADATNLTEAGYVGEDVENIILSLLQAA 168 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ + Sbjct: 178 GIIYIDEVDKIARKSDSPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAFHV----------------------------------SRPADLL---- 313 +T +ILFI GAF + P DL+ Sbjct: 238 DTTNILFICGGAFSGLESVIKQRSGTKALGFGAEIKEKKEEGVGEILARTEPMDLIRFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL + ++ L+ QY++L + E + L FT+ ++ A+A Sbjct: 298 IPEFVGRLPVVATLEELDEESLVRILKEPKNALVKQYQKLFEMEKVHLKFTDGALVAVAA 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E + D+ + S + K VVI+ + +R Sbjct: 358 EALKRKT-----GARGLRSIIENAMLDVMYDIPSQDRVKEVVINEDVIR 401 >gi|332524023|ref|ZP_08400275.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus porcinus str. Jelinkova 176] gi|332315287|gb|EGJ28272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus porcinus str. Jelinkova 176] Length = 409 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P+E++ L++Y++GQ AKRA+++A+ N ++R A+ RD EL NIL++GPTG Sbjct: 64 PKELLETLNQYVVGQDRAKRALSVAVYNHYKRVSF-AESRDDEEVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 123 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISEDIQTFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+ SD ILT+ ++ L+ QY+ L+ +G+ L F ++++DA+A+ A Sbjct: 298 EFIGRLPVVAALEQLSTSDLVKILTEPKNALVKQYQTLLSYDGVELTFDQEALDAIAEKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IARKT-----GARGLRSIIEETMLDLMF 380 >gi|224369886|ref|YP_002604050.1| ClpX2 [Desulfobacterium autotrophicum HRM2] gi|223692603|gb|ACN15886.1| ClpX2 [Desulfobacterium autotrophicum HRM2] Length = 580 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 6/114 (5%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDEL-----MPKNI 56 + FN P+E+++ LD+YI+ Q+ AK +A + + R + L ++ + NI Sbjct: 57 VNFNIKPQELIAYLDQYIVKQKRAKSVLATKICTHFNRVKHLETTKHSDVRITGSIKSNI 116 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L++GPTGVGKT I + +A+ G PF+K + TKF+E GYVG +V+ ++RDLV A Sbjct: 117 LMLGPTGVGKTYIVKLIAKRIGVPFVKADATKFSETGYVGGDVDDLVRDLVKEA 170 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 95/221 (42%), Gaps = 65/221 (29%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS----- 290 D I++ E GI++LDE DKI A + G +SR GVQR LL +E + V K Sbjct: 172 DDIELAE-CGIIYLDEIDKIAASSNLRGADISRTGVQRALLKPMEETDVDLKVPHDPVSM 230 Query: 291 -----------------INTDHILFIASGAFH-----VSR------------------PA 310 +NT +ILFI SGAF VSR + Sbjct: 231 MQELESFQRTGKRSERRVNTSNILFIMSGAFSDLNEIVSRRVTHHAMGFGSSLAKAKTNS 290 Query: 311 DLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 D+L ++ GR PVR L +L+K D ILT + +IL + Sbjct: 291 DILKQVTAEDLVEFGFESEFIGRLPVRCVLDTLSKDDLFTILTMPNNPVILGKRLDFAAY 350 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 GI + FT +++D LA A N+ GAR L +V+E L Sbjct: 351 GIDIVFTPEALDILAQRAFEENT-----GARGLVSVVENAL 386 >gi|119356466|ref|YP_911110.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium phaeobacteroides DSM 266] gi|166214769|sp|A1BE59|CLPX_CHLPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119353815|gb|ABL64686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium phaeobacteroides DSM 266] Length = 436 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EGS V K G Sbjct: 195 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 252 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 253 NINTRNILFICGGAFEGLDKLIARRVSKSSMGFGSKVKNKHTGYDPEILRFVTQDDLHEY 312 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+++ R IL + ++ +I QYK+L + +G+ L+FT++++D + Sbjct: 313 GLIPEFIGRLPVISTLDPLDETALRSILVEPKNAIIKQYKKLFEMDGVELEFTDEALDKV 372 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 D+A++ + GAR L++V+E V+ DI F L+ K VI A+ + Sbjct: 373 VDIAIDRGT-----GARALRSVLESVMIDIMFELPTLKGVKKCVITADTI 417 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 5/116 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63 SP+ I+ L +Y++GQ+ AK+++A+A+ N ++R Q+ D + ++ K NILL+GPTG Sbjct: 79 SPKAIMESLGQYVVGQEIAKKSLAVAVYNHYKRIDSQEWAHDSDEVVIEKSNILLIGPTG 138 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA L PF + T TE GYVG +VE I+ L+ + N+ R R Sbjct: 139 TGKTLLAQTLANLLDVPFTIADATSLTEAGYVGDDVETILARLLYASDFNLERTER 194 >gi|22124935|ref|NP_668358.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis KIM 10] gi|45440624|ref|NP_992163.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis biovar Microtus str. 91001] gi|108808642|ref|YP_652558.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis Antiqua] gi|108811099|ref|YP_646866.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis Nepal516] gi|145600051|ref|YP_001164127.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis Pestoides F] gi|149364998|ref|ZP_01887033.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis CA88-4125] gi|153950055|ref|YP_001402051.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pseudotuberculosis IP 31758] gi|162419302|ref|YP_001607419.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis Angola] gi|165926541|ref|ZP_02222373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. F1991016] gi|165936053|ref|ZP_02224623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. IP275] gi|166011049|ref|ZP_02231947.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. E1979001] gi|166212940|ref|ZP_02238975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. B42003004] gi|167398781|ref|ZP_02304305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421680|ref|ZP_02313433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423157|ref|ZP_02314910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025450|ref|YP_001721955.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pseudotuberculosis YPIII] gi|186894327|ref|YP_001871439.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pseudotuberculosis PB1/+] gi|218930186|ref|YP_002348061.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pestis CO92] gi|229838760|ref|ZP_04458919.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896086|ref|ZP_04511256.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis Pestoides A] gi|229899328|ref|ZP_04514471.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis biovar Orientalis str. India 195] gi|229901328|ref|ZP_04516450.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis Nepal516] gi|270489514|ref|ZP_06206588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis KIM D27] gi|294504887|ref|YP_003568949.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis Z176003] gi|21263471|sp|Q8ZC66|CLPX_YERPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122979462|sp|Q1C4K9|CLPX_YERPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123246670|sp|Q1CL64|CLPX_YERPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215220|sp|A4TPE2|CLPX_YERPP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167009021|sp|A7FLC3|CLPX_YERP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238687254|sp|A9QZQ2|CLPX_YERPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238688402|sp|B1JHS0|CLPX_YERPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238691418|sp|B2K6V8|CLPX_YERPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21957774|gb|AAM84609.1|AE013706_4 ATP-dependent specificity component of clpP serine protease, chaperone [Yersinia pestis KIM 10] gi|45435481|gb|AAS61040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis biovar Microtus str. 91001] gi|108774747|gb|ABG17266.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis Nepal516] gi|108780555|gb|ABG14613.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis Antiqua] gi|115348797|emb|CAL21751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis CO92] gi|145211747|gb|ABP41154.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis Pestoides F] gi|149291411|gb|EDM41485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia pestis CA88-4125] gi|152961550|gb|ABS49011.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pseudotuberculosis IP 31758] gi|162352117|gb|ABX86065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis Angola] gi|165916198|gb|EDR34805.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. IP275] gi|165921469|gb|EDR38666.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. F1991016] gi|165990049|gb|EDR42350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. E1979001] gi|166205727|gb|EDR50207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. B42003004] gi|166960599|gb|EDR56620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051285|gb|EDR62693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057327|gb|EDR67073.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751984|gb|ACA69502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pseudotuberculosis YPIII] gi|186697353|gb|ACC87982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pseudotuberculosis PB1/+] gi|229681257|gb|EEO77351.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis Nepal516] gi|229687730|gb|EEO79803.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis biovar Orientalis str. India 195] gi|229695126|gb|EEO85173.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701009|gb|EEO89038.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis Pestoides A] gi|262362953|gb|ACY59674.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis D106004] gi|262366872|gb|ACY63429.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis D182038] gi|270338018|gb|EFA48795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Yersinia pestis KIM D27] gi|294355346|gb|ADE65687.1| ATP-dependent protease ATP-binding subunit [Yersinia pestis Z176003] gi|320016342|gb|ADV99913.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ + GAR L++++E L D + + D EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398 >gi|329296783|ref|ZP_08254119.1| ATP-dependent protease ATP-binding subunit ClpX [Plautia stali symbiont] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S+ P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A N T GAR L++++E L + + ++ + VVID Sbjct: 359 AKKA-NSRKT----GARGLRSIVEAALLETMYDLPSMEGVEKVVID 399 >gi|262374980|ref|ZP_06068214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter lwoffii SH145] gi|262309993|gb|EEY91122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter lwoffii SH145] Length = 436 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ AD EL NI+LVGPTG Sbjct: 63 PHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKVQNNGKKADDSVELSKSNIMLVGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 63/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 238 Query: 292 NTDHILFIASGAF--------------------------HVSRPADL------------- 312 +T +ILFI GAF + +DL Sbjct: 239 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTAEVRKKDETKKLSDLFRQVEATDLVKFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ ILT+ ++ L QY+ L E + L F E ++ A+A Sbjct: 299 LIPEFIGRLPVIATLDELDEEALMQILTEPKNALTRQYQHLFDMEDVDLVFEESALRAVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 AV N+ GAR L++++E L + + S SD+ TVVI+ ++ Sbjct: 359 KKAVERNT-----GARGLRSILENSLLETMYDLPSRSDV--GTVVINEAVIK 403 >gi|329957342|ref|ZP_08297862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides clarus YIT 12056] gi|328523055|gb|EGF50158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides clarus YIT 12056] Length = 414 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTASIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRSILTEPKNSIIKQYVKLFEMDGVKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D+ F + + V+ +Y R Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEHKDSFVVTLDYAR 400 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ DAKR +++++ N ++R Q D E+ NI++VG TG GKT Sbjct: 67 PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|16759429|ref|NP_455046.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142799|ref|NP_806141.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160793|ref|ZP_03346503.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425857|ref|ZP_03358607.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646004|ref|ZP_03376057.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827299|ref|ZP_06545982.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21263470|sp|Q8Z8V1|CLPX_SALTI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|25296072|pir||AD0558 ATP-dependent clp protease ATP-binding chain ClpX [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501720|emb|CAD08908.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi] gi|29138431|gb|AAO70001.1| ATP-dependent clp protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|149186484|ref|ZP_01864796.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. SD-21] gi|148829711|gb|EDL48150.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. SD-21] Length = 418 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI L+ Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 66 TPKEIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHGGKAGDVELAKSNILLVGPTGCGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II L+ + Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313 ++T +ILFI GAF HV+ P DLL Sbjct: 237 QVDTTNILFICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRRIGELLEKGEPEDLLKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L+ ILT+ ++ L QY +L + E + L F ED++ + Sbjct: 297 GLIPEFVGRLPVIATLRDLDTDALITILTEPKNALCKQYAKLFELENVELTFQEDALKKI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ A+ + GAR L++++E +L D F D+ T +VIDA+ V Sbjct: 357 AEKAIARKT-----GARGLRSIVEGILLDTMFDLPDMDGVTEIVIDADVV 401 >gi|148381179|ref|YP_001255720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A str. ATCC 3502] gi|153932077|ref|YP_001385554.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum A str. ATCC 19397] gi|153935476|ref|YP_001388960.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum A str. Hall] gi|153938984|ref|YP_001392581.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum F str. Langeland] gi|168179120|ref|ZP_02613784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum NCTC 2916] gi|168183547|ref|ZP_02618211.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum Bf] gi|170756735|ref|YP_001782869.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum B1 str. Okra] gi|226950658|ref|YP_002805749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A2 str. Kyoto] gi|237796686|ref|YP_002864238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum Ba4 str. 657] gi|166989835|sp|A7FYI1|CLPX_CLOB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167008726|sp|A5I6W0|CLPX_CLOBH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167009011|sp|A7GIH1|CLPX_CLOBL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229889850|sp|B1IND6|CLPX_CLOBK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763840|sp|C1FLA5|CLPX_CLOBJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|259491253|sp|C3KU76|CLPX_CLOB6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148290663|emb|CAL84792.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium botulinum A str. ATCC 3502] gi|152928121|gb|ABS33621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A str. ATCC 19397] gi|152931390|gb|ABS36889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A str. Hall] gi|152934880|gb|ABS40378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum F str. Langeland] gi|169121947|gb|ACA45783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum B1 str. Okra] gi|182670079|gb|EDT82055.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum NCTC 2916] gi|182673331|gb|EDT85292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum Bf] gi|226844071|gb|ACO86737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A2 str. Kyoto] gi|229262137|gb|ACQ53170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum Ba4 str. 657] gi|295320565|gb|ADG00943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum F str. 230613] gi|322807544|emb|CBZ05119.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium botulinum H04402 065] Length = 429 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61 LT P EI + LD+Y+IGQ+DAK+++++A+ N ++R + D EL NILL+GP Sbjct: 57 LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 NT +ILFI GAF + R P DLL Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT+ ++ L+ QYK+L + + + L+F ++++ +AD Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N N+ GAR L+ ++E ++ +I F Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379 >gi|315185395|gb|EFU19167.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta thermophila DSM 6578] Length = 412 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 6/116 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI S LD+Y+IGQ AK+ +++A+ N ++R +L D+ EL NILL+GPTG Sbjct: 61 TPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDV--ELEKSNILLLGPTG 118 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LA+ PF + T TE GYVG +VE I+ L+ A N + + R Sbjct: 119 SGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 174 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 62/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYGS-------- 290 GIV++DE DKI + G I ++R EGVQ+ LL +VEG+ SV + G Sbjct: 175 GIVYIDEIDKIAKK--GENISITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQEMI 232 Query: 291 -INTDHILFIASGAF---------HVS-------------------------RPADLL-- 313 I+T +ILFIA GAF VS P DL+ Sbjct: 233 RIDTTNILFIAGGAFVGLDKIIESRVSEHPMGFGAEVKSRREKNLAELYAQMHPDDLIKF 292 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFP+ V L+ L K D I+ + ++++ QYK +K + + L +++++A+ Sbjct: 293 GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDVDLVVEDEAVEAI 352 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYVR 420 AD+A++ + GAR ++ + E ++ D+ + + K VVI + V+ Sbjct: 353 ADLAIHRKT-----GARGIRAIFEHIMMDVMYEIPSIPGPKRVVITRDVVQ 398 >gi|292493107|ref|YP_003528546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nitrosococcus halophilus Nc4] gi|291581702|gb|ADE16159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosococcus halophilus Nc4] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L++Y+IGQ AK+ +++A+ N ++R QL D EL NILL+GPTG GK Sbjct: 68 TPHEIRDILNQYVIGQNRAKKVLSVAVYNHYKRLQLGKKNDDVELSKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 NT +ILFI GAF P DL+ Sbjct: 241 NTANILFICGGAFAGLEKIIRDRSKKGGIGFSAEVKSVEDKRSMGEILQAVEPEDLIKYG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+++ ILT+ ++ L Q+ L + E ++F ED++ A+A Sbjct: 301 LIPEFVGRMPVVATLDELDEAALIRILTEPKNALTKQFARLFEMENSKVEFREDALRAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L++++E VL D + + VVID V+ Sbjct: 361 AKAMERKT-----GARGLRSILENVLLDTMYDLPSMDHVSKVVIDESVVK 405 >gi|146310566|ref|YP_001175640.1| ATP-dependent protease ATP-binding subunit ClpX [Enterobacter sp. 638] gi|167009015|sp|A4W7A9|CLPX_ENT38 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145317442|gb|ABP59589.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterobacter sp. 638] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSEKANEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALIAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|118587402|ref|ZP_01544828.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni ATCC BAA-1163] gi|118432226|gb|EAV38966.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni ATCC BAA-1163] Length = 429 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+V L+ Y+IGQ++AK+ +A+A+ N ++R + L EL NILL+GPTG G Sbjct: 74 TPIELVKHLNEYVIGQEEAKKTLAVAVYNHYKRVNESLQHKSDVELQKSNILLIGPTGSG 133 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE ++ L+ A V +++R Sbjct: 134 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 187 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV + Y + Sbjct: 188 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 247 Query: 292 NTDHILFIASGAF---------------------------------HVSRPAD------- 311 +T +ILFI GAF +++ D Sbjct: 248 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQQFNKKNPLTQLTDQDVIKFG 307 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L + D ILT ++ L+ QYK L+ +G+ L F ++ +A Sbjct: 308 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLVFDPKALKEMA 367 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A++ S GAR L+++ME +++ + Sbjct: 368 KIAIDKKS-----GARGLRSIMESTMKETMY 393 >gi|260101782|ref|ZP_05752019.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075] gi|112148408|gb|ABI13542.1| Clp protease ATP-binding subunit [Lactobacillus helveticus CNRZ32] gi|260084426|gb|EEW68546.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075] gi|328468550|gb|EGF39552.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus helveticus MTCC 5463] Length = 424 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L +L+ D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|51595310|ref|YP_069501.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia pseudotuberculosis IP 32953] gi|61211451|sp|Q66DT3|CLPX_YERPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|51588592|emb|CAH20200.1| specificity component of clpA-clpP ATP-dependent serine protease, chaperone [Yersinia pseudotuberculosis IP 32953] Length = 423 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ + GAR L++++E VL D + + D EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSMDSVEKVVV 398 >gi|313206080|ref|YP_004045257.1| sigma 54 interacting domain protein [Riemerella anatipestifer DSM 15868] gi|312445396|gb|ADQ81751.1| Sigma 54 interacting domain protein [Riemerella anatipestifer DSM 15868] gi|315023741|gb|EFT36744.1| ATP-dependent Clp protease ATP-binding subunit clpX [Riemerella anatipestifer RA-YM] gi|325336480|gb|ADZ12754.1| ATP-dependent protease Clp, ATPase subunit, RNA polymerase sigma factor 54, interaction [Riemerella anatipestifer RA-GD] Length = 390 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 56/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 233 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT +ILFIA GAF V+ R L+ Sbjct: 234 NTQNILFIAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GRFPV +L L K I+ + +++++ Q+K L K +GI L+FT+++++ + D Sbjct: 294 PELLGRFPVITYLDQLTKKTMVRIMKEPKNSIVNQFKALFKIDGIDLEFTDEALEKIVDE 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 +GAR L+ E+VLED F + + + I+ Sbjct: 354 TFEKG-----LGARGLRGTTEKVLEDYMFDIDIISKNKITIN 390 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 PREI LD Y+IGQ AK+ ++IA+ N ++R + +D E+ NI+++G TG G Sbjct: 60 PREIKKTLDEYVIGQDQAKKQLSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ +AR PF V+ T TE GYVG +VE I+ L+ VA Sbjct: 120 KTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 164 >gi|312128164|ref|YP_003993038.1| ATP-dependent clp protease, ATP-binding subunit clpx [Caldicellulosiruptor hydrothermalis 108] gi|311778183|gb|ADQ07669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor hydrothermalis 108] Length = 433 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKVESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|150003036|ref|YP_001297780.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides vulgatus ATCC 8482] gi|254883674|ref|ZP_05256384.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 4_3_47FAA] gi|294775660|ref|ZP_06741168.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides vulgatus PC510] gi|319642189|ref|ZP_07996849.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp. 3_1_40A] gi|149931460|gb|ABR38158.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides vulgatus ATCC 8482] gi|254836467|gb|EET16776.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 4_3_47FAA] gi|294450504|gb|EFG18996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides vulgatus PC510] gi|317386175|gb|EFV67094.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides sp. 3_1_40A] Length = 416 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D+ F + K + ++ + +G Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 406 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ DAKR +++A+ N ++R D D E+ NI++VG TG GKT Sbjct: 69 PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E ++ L+ VA V E+ R Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180 >gi|319953652|ref|YP_004164919.1| sigma 54 interacting domain protein [Cellulophaga algicola DSM 14237] gi|319422312|gb|ADV49421.1| Sigma 54 interacting domain protein [Cellulophaga algicola DSM 14237] Length = 411 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAF----------------------HVSRPAD----------------LL 313 NT++ILFIA GAF + RP + L+ Sbjct: 235 NTENILFIAGGAFDGIERAINKRLNMQSIGYSASKNEDRPDENNILQYIIPRDLKEFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ R ILT+ ++ +I QY++L K + + L T+++++ + + Sbjct: 295 PEIIGRLPVLTHMNPLDTEALRAILTEPKNAIIKQYEKLFKMDDVTLTVTDEALNYIVEK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E + D F EK + + Y Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFELPSSDEKQLKVSRAY 394 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P EI LD YIIGQ+ K+ +++A+ N ++R P+ L DE + NI++VG TG GK Sbjct: 62 PLEIKDFLDTYIIGQERTKKVMSVAVYNHYKRLLQPSSLEDEVEIQKSNIIMVGQTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165 >gi|237725285|ref|ZP_04555766.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. D4] gi|229436551|gb|EEO46628.1| ATP-dependent protease ATP-binding subunit [Bacteroides dorei 5_1_36/D4] Length = 416 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ DAKR +++A+ N ++R D D E+ NI++VG TG GKT Sbjct: 69 PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E ++ L+ VA V E+ R Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D+ F + K + ++ + +G Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKHQMG 406 >gi|170761592|ref|YP_001788550.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum A3 str. Loch Maree] gi|238688794|sp|B1L1D6|CLPX_CLOBM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169408581|gb|ACA56992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum A3 str. Loch Maree] Length = 429 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61 LT P EI + LD+Y+IGQ+DAK+++++A+ N ++R + D EL NILL+GP Sbjct: 57 LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 NT +ILFI GAF + R P DLL Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT+ ++ L+ QYK+L + + + L+F ++++ +AD Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKGIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N N+ GAR L+ ++E ++ +I F Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379 >gi|53715361|ref|YP_101353.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides fragilis YCH46] gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides fragilis NCTC 9343] gi|253567250|ref|ZP_04844700.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5] gi|265767848|ref|ZP_06095380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_16] gi|61211441|sp|Q64NW3|CLPX_BACFR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81313618|sp|Q5L8L7|CLPX_BACFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|52218226|dbj|BAD50819.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides fragilis YCH46] gi|60494764|emb|CAH09570.1| putative ATP-dependent CLP protease ATP-binding subunit [Bacteroides fragilis NCTC 9343] gi|251944081|gb|EES84600.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 3_2_5] gi|263252520|gb|EEZ24048.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_16] gi|301164819|emb|CBW24379.1| putative ATP-dependent CLP protease ATP-binding subunit [Bacteroides fragilis 638R] Length = 415 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239 Query: 292 NTDHILFIASGAF-------------HV-----SR---------------PADL-----L 313 NT +ILFI GAF HV SR P DL + Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYNASRKTATIDKNNMMQYIAPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 300 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGVKLTFQPEVYEYIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 AV +GAR L++++E ++ D+ F + D +E V +D Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDQKEYEVTLD 398 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ DAKR +A+++ N ++R L D D E+ NI++VG TG GK Sbjct: 68 PVEIKNFLDQYVIGQDDAKRFLAVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179 >gi|330503118|ref|YP_004379987.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas mendocina NK-01] gi|328917404|gb|AEB58235.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas mendocina NK-01] Length = 426 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R D +D EL NILL+GPTG G Sbjct: 67 APKEISAILDQYVIGQERAKKVLSVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTRNILFICGGAFAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E +L D + Q+ VVID Sbjct: 360 QKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399 >gi|222528716|ref|YP_002572598.1| ATP-dependent protease ATP-binding subunit ClpX [Caldicellulosiruptor bescii DSM 6725] gi|254763830|sp|B9MQ33|CLPX_ANATD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|222455563|gb|ACM59825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor bescii DSM 6725] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHNTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|172041058|ref|YP_001800772.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium urealyticum DSM 7109] gi|171852362|emb|CAQ05338.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium urealyticum DSM 7109] Length = 424 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 8/120 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLV 59 +P EI + LD+Y+IGQ DAKR +A+A+ N ++R Q+ D EL NIL++ Sbjct: 61 TPSEISAFLDKYVIGQDDAKRTLAVAVYNHYKRIQVEEANALARRNDDEVELSKSNILML 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 121 GPTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQSADFDVEKAQR 180 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 56/210 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 181 GIIYIDEVDKIGRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T ++LFI +GAF P DL + Sbjct: 241 DTKNVLFIVAGAFAGLEKVIEDRRGKKGLGFGAEVTSKNDQVKDPFQYVEPEDLVKFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV H+ L++ +LT+ ++ L+ QY+ L + + + L F + ++ +A Sbjct: 301 PEVIGRLPVVTHVGHLDEDALVQVLTEPKNALVRQYQRLFEMDNVQLAFEDGALREVARQ 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A+ + GAR L+++MER+L I +S Sbjct: 361 AL-----ARETGARGLRSIMERILLPIMYS 385 >gi|146307079|ref|YP_001187544.1| ATP-dependent protease ATP-binding subunit [Pseudomonas mendocina ymp] gi|166214806|sp|A4XTZ6|CLPX_PSEMY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145575280|gb|ABP84812.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas mendocina ymp] Length = 426 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R D +D EL NILL+GPTG G Sbjct: 67 APKEISAILDQYVIGQERAKKVLSVAVYNHYKRLN-QRDKKDDVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTRNILFICGGAFAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E +L D + Q+ VVID Sbjct: 360 QRALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399 >gi|312622970|ref|YP_004024583.1| ATP-dependent clp protease, ATP-binding subunit clpx [Caldicellulosiruptor kronotskyensis 2002] gi|312203437|gb|ADQ46764.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor kronotskyensis 2002] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|296284616|ref|ZP_06862614.1| ATP-dependent protease ATP-binding subunit ClpX [Citromicrobium bathyomarinum JL354] Length = 421 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + L+ Y+IGQ+ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 63 TPSEICATLNDYVIGQERAKRVLSVAVHNHYKRLKHAGKQGDVELAKSNILLVGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II L+ + Sbjct: 123 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 166 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 174 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 233 Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313 ++T +ILFI GAF HV S P DLL Sbjct: 234 QVDTTNILFICGGAFAGLDKIIGDRLQKRSIGFGAHVADPDKRRIGELLEKSEPEDLLKF 293 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+ IL + ++ ++ QY +L + EG+ L F +D++ A+ Sbjct: 294 GLIPEFVGRLPVIASLHDLDVDALVTILQEPKNAIVKQYAKLFELEGVELTFNDDALRAI 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ A+ + GAR L++++E +L D + DL+ VVID + V Sbjct: 354 AERAIKRKT-----GARGLRSIVEGLLLDTMYDLPDLEGCNEVVIDKDVV 398 >gi|302871326|ref|YP_003839962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor obsidiansis OB47] gi|302574185|gb|ADL41976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor obsidiansis OB47] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|295088061|emb|CBK69584.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides xylanisolvens XB1A] Length = 414 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 60/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTATVDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F + D +E V++D Y ++ + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSEDKKEYKVMLD--YAKMQL 403 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 178 >gi|157374681|ref|YP_001473281.1| ATP-dependent protease ATP-binding subunit [Shewanella sediminis HAW-EB3] gi|189044153|sp|A8FTI0|CLPX_SHESH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157317055|gb|ABV36153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella sediminis HAW-EB3] Length = 425 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PRE+ + LD Y+IGQ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 67 TPRELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NAGPKDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILF+ GAF H P DL Sbjct: 240 DTSKILFVCGGAFSGLEKVIEQRSHTGTGIGFGAEVKGEDDKASISDILMQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+ + IL++ ++ + Q+ L EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFDMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A L + GAR L++++E +L DI + + VVID V+ Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405 >gi|315650538|ref|ZP_07903604.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] gi|315487193|gb|EFU77509.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium saburreum DSM 3986] Length = 463 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 57/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GIVF+DE DKI + + N VS E VQ++LL L+EGS V G+ +NT Sbjct: 230 GIVFIDEIDKIAKKKNTNTRDVSGESVQQELLKLLEGSKVEVPVGTNQKNVLAPMETVNT 289 Query: 294 DHILFIASGAFHVS---------------------------------------RPADLLP 314 D+ILFI GAF R ++P Sbjct: 290 DNILFICGGAFPALDDIIKERLQKNTSVGFNSELKDKYDNETDLYSKVTNEDIRKFGMIP 349 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+K F+ IL + ++ ++ QYK L++ + + L F +D+ D +A+ A Sbjct: 350 EFIGRLPVICTLSKLDKDAFKKILNEPKNAILKQYKRLLELDEVELVFDDDATDYIAEQA 409 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 + D GAR L++++E + DI + D V+I +Y+ H G Sbjct: 410 MK-----KDTGARALRSIIEEFMLDIMYEIPKDKNIGRVIITRDYLE-HKG 454 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 10/144 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66 +P +I LD Y+IGQ AK+ +++A+ N ++R L D + K NIL++GPTG GK Sbjct: 117 APHKIKEMLDEYVIGQDVAKKVISVAVYNHYKRIFLDKDKEGTRIEKSNILMIGPTGSGK 176 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 T + + LA+L P + T TE GY+G ++E +I L+ A N V R + Sbjct: 177 TYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVISKLLLSAGNDVE-------RAEC 229 Query: 127 SINAEERILDALVGKTATSNTREV 150 I + I + K +NTR+V Sbjct: 230 GIVFIDEI--DKIAKKKNTNTRDV 251 >gi|213022389|ref|ZP_03336836.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 168 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 13/107 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 >gi|52425901|ref|YP_089038.1| ATP-dependent protease ATP-binding subunit [Mannheimia succiniciproducens MBEL55E] gi|61211443|sp|Q65RF7|CLPX_MANSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|52307953|gb|AAU38453.1| ClpX protein [Mannheimia succiniciproducens MBEL55E] Length = 412 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + + D EL NILL+GPTG GK Sbjct: 65 TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSNHGIADVELGKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +I+ L+ Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVIQKLL 165 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 101/233 (43%), Gaps = 60/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 237 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILFI GAF V D Sbjct: 238 DTSKILFICGGAFAGLDRVVQKRIHKGSGIGFDAEVKGKEDEVSLTDLLKQIETEDLIKY 297 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ ILT+ ++ L QY+ L E + L+FT ++++A+ Sbjct: 298 GLIPEFIGRLPVVAPLSELDEKALVQILTEPKNALTKQYQALFGLENVELEFTPEALNAM 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422 A A+ + GAR L++++E L D + L+ VV+D + H Sbjct: 358 AKKALERKT-----GARGLRSIVEGALLDTMYDLPSLEGLVKVVVDEAVINEH 405 >gi|326803638|ref|YP_004321456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus urinae ACS-120-V-Col10a] gi|326651295|gb|AEA01478.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aerococcus urinae ACS-120-V-Col10a] Length = 418 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD--ELMPKNILLVGPTG 63 P EI LD Y+IGQ DAK+A+++A+ N ++R Q+ D EL NILLVGPTG Sbjct: 65 PTEIRQILDDYVIGQTDAKKALSVAVYNHYKRINSNQIKNQDEDNVELQKSNILLVGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 SGKTYLAQTLARILKVPFAIADATSLTEAGYVGEDVENILLKLLQAA 171 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 56/229 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 181 GIIYIDEIDKIATKAENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314 +T +ILFI GAF ++ P DL +P Sbjct: 241 DTTNILFIVGGAFDGIENIIKERTGHKVIGFQATKTTKAEKHDLMTQVIPEDLQKYGLIP 300 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L LN+ D ILT+ ++ LI QYK+L+ + + L+FT+DS+ A+A A Sbjct: 301 EFIGRLPIIASLDELNEEDLERILTEPKNALIKQYKQLLAMDNVQLEFTDDSLRAIAQKA 360 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 ++ + GAR L++++E + ++ + ++ V+I E V+ H Sbjct: 361 IDRKT-----GARGLRSIIEESMLEVMYDIPSREDVSKVIITEEVVKDH 404 >gi|144899461|emb|CAM76325.1| ClpX, ATPase regulatory subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 421 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P++I + LD Y+IGQ AK+ +++A+ N ++R Q + E+ NILL+GPTG GK Sbjct: 65 TPKDIRAVLDDYVIGQDHAKKVLSVAVHNHYKRLQHGGKAGEVEIAKSNILLIGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAAEYNVERAQR 177 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 238 DTTNILFICGGAFAGLEKVIGTRGKNNSIGFGAEVRGPDERRTGQILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+ IL+ ++ L+ QY+ L + E L F ED++ ++A+ Sbjct: 298 IPEFVGRLPVLATLDDLDVGALVEILSKPKNALVKQYQRLFEMEDTRLSFKEDALVSIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME +L D F Sbjct: 358 KAIARKT-----GARGLRSIMESILLDTMF 382 >gi|114799276|ref|YP_760783.1| ATP-dependent protease ATP-binding subunit ClpX [Hyphomonas neptunium ATCC 15444] gi|123128702|sp|Q0C0G0|CLPX_HYPNA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114739450|gb|ABI77575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hyphomonas neptunium ATCC 15444] Length = 420 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ+ AKR +++A+ N ++R EL NILLVGPTG GK Sbjct: 66 TPQEICDVLDDYVIGQRYAKRILSVAVHNHYKRLSHAGKTDGVELSKSNILLVGPTGCGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 126 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIVLKLLQSADYNVERAQR 178 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T +ILFI GAF +R P DL Sbjct: 239 DTTNILFICGGAFAGLEKIIAARGENASIGFGATIKSGEERGVGDTLREVEPEDLQKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT ++ L+ QY+ L E + L FT +++ A+A Sbjct: 299 IPEFIGRLPVLATLEDLDEKALIQILTQPKNALLKQYQRLFDMESVQLTFTPEALVAVAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F +L+ + VVI+AE V Sbjct: 359 RAITRKT-----GARGLRSIMESILLDTMFELPNLRGVEEVVINAEVV 401 >gi|20807120|ref|NP_622291.1| ATP-dependent protease ATP-binding subunit [Thermoanaerobacter tengcongensis MB4] gi|254479267|ref|ZP_05092610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Carboxydibrachium pacificum DSM 12653] gi|23813862|sp|Q8RC24|CLPX_THETN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|20515614|gb|AAM23895.1| ATP-dependent protease Clp, ATPase subunit [Thermoanaerobacter tengcongensis MB4] gi|214034805|gb|EEB75536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Carboxydibrachium pacificum DSM 12653] Length = 425 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD+Y+IGQ AK+A+A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 63 PKEIKAFLDQYVIGQDRAKKALAVAVYNHYKRINSKVKSDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLRLIQAA 165 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 235 DTTNILFICGGAFEGIDKIIESRIGKKSLGFGAEVQSKKEKDVGEILKHIM-PEDLLKFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L L K D ILT+ ++ L+ QY++L + +G+ L+F + ++D +A Sbjct: 294 MIPEFIGRVPIVVTLDPLTKDDLVRILTEPKNALVKQYEKLFEMDGVKLEFEKKALDLIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 ++A+ + GAR L+ ++E ++ D+ + SD + +I E VR Sbjct: 354 EMALERGT-----GARGLRAILEDIMLDVMYEIPSDETIEKCIITEETVR 398 >gi|330994050|ref|ZP_08317980.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconacetobacter sp. SXCC-1] gi|329758996|gb|EGG75510.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gluconacetobacter sp. SXCC-1] Length = 419 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PREI LD Y+IGQ AK+ +++A+ N ++R D E+ NI+L+GPTG GK Sbjct: 64 TPREICKILDDYVIGQAHAKKVLSVAVHNHYKRLAHAQKNNDVEIAKSNIMLLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVEKAQR 176 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T ++LFI GAF V P + L Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPEERRMGAVLRDVEPEDLLKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ ILT ++ L+ QY L + E + L FTED++ +A Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEEVQLTFTEDALRQIAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ ++E +L F L Sbjct: 357 RAIARRT-----GARGLRAILESILLSTMFDLPGL 386 >gi|307718288|ref|YP_003873820.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta thermophila DSM 6192] gi|306532013|gb|ADN01547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta thermophila DSM 6192] Length = 412 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 6/116 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI S LD+Y+IGQ AK+ +++A+ N ++R +L D+ EL NILL+GPTG Sbjct: 61 TPQEIHSYLDQYVIGQDHAKKVLSVAVYNHYKRILHGHKLSEDV--ELEKSNILLLGPTG 118 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LA+ PF + T TE GYVG +VE I+ L+ A N + + R Sbjct: 119 SGKTLLARTLAKKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 174 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYGS-------- 290 GIV++DE DKI + G I ++R EGVQ+ LL +VEG+ +V + G Sbjct: 175 GIVYIDEIDKIAKK--GENISITRDVSGEGVQQALLKIVEGTVAAVPPQGGRKHPNQEMI 232 Query: 291 -INTDHILFIASGAF---------HVS-------------------------RPADLL-- 313 I+T +ILFIA GAF VS P DL+ Sbjct: 233 RIDTTNILFIAGGAFVGLDKIIESRVSEHPMGFGAEVKSRREKNLAELYAQMHPDDLIKF 292 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFP+ V L+ L K D I+ + ++++ QYK +K + + L +++++A+ Sbjct: 293 GMIPEFVGRFPIHVGLRELKKEDLVRIIKEPRNSVLKQYKATLKLDDVDLVVEDEAVEAI 352 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AD+A++ + GAR ++ + E ++ D+ + Sbjct: 353 ADLAIHRKT-----GARGIRAIFEHIMMDVMY 379 >gi|153809071|ref|ZP_01961739.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185] gi|149128404|gb|EDM19623.1| hypothetical protein BACCAC_03379 [Bacteroides caccae ATCC 43185] Length = 414 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQTTARIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L++ +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRDALRAILTEPKNSIIKQYVKLLEMDGIKLTFEDSVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y + + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSGSKKEYEVTLDYAKQQL 403 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 5/122 (4%) Query: 2 KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57 KL N P+ EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI+ Sbjct: 58 KLNLNELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNII 116 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 +VG TG GKT ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ Sbjct: 117 MVGSTGTGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEA 176 Query: 118 RR 119 + Sbjct: 177 EQ 178 >gi|28211966|ref|NP_782910.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium tetani E88] gi|46576541|sp|Q891J8|CLPX_CLOTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28204409|gb|AAO36847.1| ATP-dependent clp protease ATP-binding subunit clpX [Clostridium tetani E88] Length = 431 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI S LD Y+IGQ DAK+A+++A+ N ++R L ++ D EL NILL+GPTG GK Sbjct: 65 PSEIKSYLDDYVIGQDDAKKALSVAVYNHYKRINL-NNVNDDVELQKSNILLLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTMAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPHQEFIQL 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 NT +ILFI GAF + R P DLL Sbjct: 237 NTTNILFICGGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L++ ILT+ ++ L+ QYK+L + + + L+F E+++ A+A+ Sbjct: 297 IPEFIGRLPITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAE 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ ++ GAR L++++E +++DI F SD V+I+ E V Sbjct: 357 EAIRRST-----GARGLRSIIEEIMKDIMFEIPSDESISKVIINEETV 399 >gi|67516135|ref|XP_657953.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4] gi|40746599|gb|EAA65755.1| hypothetical protein AN0349.2 [Aspergillus nidulans FGSC A4] gi|259489415|tpe|CBF89668.1| TPA: ATP-dependent Clp protease, putative (AFU_orthologue; AFUA_1G02170) [Aspergillus nidulans FGSC A4] Length = 630 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 159/388 (40%), Gaps = 58/388 (14%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 N+LL+GP+GVGKT + R LAR+ PF + T FT+ GY+G + E + L+ A V Sbjct: 202 NVLLLGPSGVGKTLMCRSLARVLSVPFSISDCTPFTQAGYIGDDAEVCVHRLLAAANYDV 261 Query: 115 RESRR-----DEV-----------REQASINAEERILDALVGKTATSNTR-EVFRKKLRD 157 ++ R DE+ R+ +E +L L G T + E +L Sbjct: 262 EQAERGIIVLDEIDKIAAAKVSHGRDVGGSGVQESLLKLLEGTTVQVQAKQERSAPRLSG 321 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP 217 S + + +T F PGG +V + E+++ R I + Sbjct: 322 TTSSSYPPNGPLGNTP-----FTPPGGGNVP--HKGEVYNV-----RTDNILFICSGAFA 369 Query: 218 ELMRDESDRLIDMDTVHRDSI---QMVENYGIVFLD---EFDKIVARDSGNGIGVSREGV 271 L + + MD + R S+ Q V N D +D + G E + Sbjct: 370 GLHK------VVMDRISRGSMGFGQPVRNPPQTSTDRPHSYDSTANQPVPILPGSEEEAL 423 Query: 272 QRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHL 326 + LP S+S S + F A + DL +PE+ GR PV L Sbjct: 424 YKKHLPFFTPPSLS----SPEAEPTYF---NALDLINQTDLQNYGFIPELVGRIPVNAAL 476 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 +L++ ILT+ ++L+ QY L GI L FT ++ +A A + + GA Sbjct: 477 SALSQPLLVRILTEPRNSLVAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GA 531 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVI 414 R L+T ME +L D F K V++ Sbjct: 532 RALRTEMETILSDAMFETPGSSVKFVLV 559 >gi|322372510|ref|ZP_08047046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C150] gi|321277552|gb|EFX54621.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C150] Length = 408 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+E++ L+ Y++GQ AKRA+A+A+ N ++R D EL NIL++GPTG G Sbjct: 63 PKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNEVELQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F ++++ A+A A Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQEALGAIASKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F ++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390 >gi|312195812|ref|YP_004015873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EuI1c] gi|311227148|gb|ADP80003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EuI1c] Length = 430 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD---ELMPKNILLVGP 61 PREI LD Y++GQ+ AK+ +++A+ N ++R Q P+D EL NILL+GP Sbjct: 64 PREIYEFLDGYVVGQETAKKTLSVAVYNHYKRIQAGGSAPSDSAKADVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T ++LFI GAF SR P DLL Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDAADVFGDVMPEDLLKYGM 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV +++L++ ILT+ ++ L+ QYK L + + + LDFT D+++A+AD Sbjct: 302 IPEFIGRLPVLTSVQNLDREALIRILTEPKNALVRQYKRLFELDNVDLDFTSDALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VV+ E V H+ Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLMSVMYDIPSRKDVARVVVTREVVLEHV 408 >gi|299143347|ref|ZP_07036427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517832|gb|EFI41571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 405 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI S LD Y+I Q AK+A+A+A+ N ++R + + +R+ EL NIL++GPTG G Sbjct: 60 PEEIKSVLDSYVIKQDKAKKALAVAVYNHYKR--INSSIRNPEIELQKSNILMIGPTGSG 117 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 118 KTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENIILKLIQAA 162 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 172 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQI 231 Query: 292 NTDHILFIASGAF---------HVSRPA-----------------------------DLL 313 +T +ILFI GAF + + + L+ Sbjct: 232 DTTNILFIVGGAFDGLDKIIESRIGKTSMGFGSELVDKKKQRENILDKIETGDLLKFGLI 291 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR P+ V L+SL+++ ILT ++ L+ QYKEL+K + + L+F +++ +A + Sbjct: 292 PELIGRLPLTVTLESLDEAALVEILTKPKNALVKQYKELLKLDNVELEFETNALKQIAKI 351 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ V+E ++ DI + Sbjct: 352 AIDKKA-----GARGLRGVIEHIIMDIMY 375 >gi|187776851|ref|ZP_02993324.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC 15579] gi|187775510|gb|EDU39312.1| hypothetical protein CLOSPO_00390 [Clostridium sporogenes ATCC 15579] Length = 429 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGP 61 LT P EI + LD+Y+IGQ+DAK+++++A+ N ++R + D EL NILL+GP Sbjct: 57 LTSLPKPTEIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGP 116 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 117 TGSGKTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 NT +ILFI GAF + R P DLL Sbjct: 235 NTTNILFICGGAFDGVDKIIERRTRTSSLGFGAEIQSKKEKDLGKLLKDIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT+ ++ L+ QYK+L + + + L+F ++++ +AD Sbjct: 295 IPEFIGRLPIVVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKGIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+N N+ GAR L+ ++E ++ +I F Sbjct: 355 EAINRNT-----GARGLRAIIEDMMREIMF 379 >gi|119713090|gb|ABL97159.1| ATP-dependent Clp protease ATP-binding subunit ClpX [uncultured marine bacterium EB0_49D07] Length = 414 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RDELMPKNILLVGPTGVGK 66 SP EI ++LD Y+IGQ+ AK+ +++A+ N ++R + + + EL N+LL+GPTG GK Sbjct: 60 SPLEIFNQLDEYVIGQEKAKKILSVAVYNHYKRLRSNSKKDKIELQKSNVLLLGPTGSGK 119 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 120 TLLAQTLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLL 160 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 103/232 (44%), Gaps = 57/232 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ I Sbjct: 173 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEFIQI 232 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T +ILFI GAF P DL + Sbjct: 233 DTSNILFICGGAFSGIDEVIKHRTDNSGIGFGAAVKDTKATVASIVETLEPEDLVKFGLI 292 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ IL + ++ L+ QYK L + + + LDF +++ +A Sbjct: 293 PEFVGRLPVISTLHELDEEALVRILQEPKNALVNQYKYLFEIDEVELDFRTEALIEIAKR 352 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 A+ + GAR L+++ME +L D F ++ + V++D V LH D Sbjct: 353 ALKRKT-----GARGLRSIMEELLMDTMFELPNVDLEKVIVDENSV-LHSTD 398 >gi|317502016|ref|ZP_07960200.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] gi|316896696|gb|EFV18783.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 8_1_57FAA] Length = 497 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+A+A+A+ N ++R + +D D E+ N+L++GPTG G Sbjct: 142 APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 199 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V E EQ Sbjct: 200 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 253 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TSN R+V + ++ G Sbjct: 254 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 283 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++NT Sbjct: 254 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 313 Query: 294 DHILFIASGAF----------------------------HVS-----------RPADLLP 314 +ILFI +GAF H R ++P Sbjct: 314 KNILFICAGAFPDLEDIIKERLTKKTSMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 373 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + + ++ QY++L+ + + L F + +++ +A+ A Sbjct: 374 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 433 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 434 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 474 >gi|289809697|ref|ZP_06540326.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 254 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL G Sbjct: 51 TPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLTG 104 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 105 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 163 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 164 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 223 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 224 DTSKILFICGGAF 236 >gi|170720928|ref|YP_001748616.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas putida W619] gi|229484079|sp|B1J693|CLPX_PSEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169758931|gb|ACA72247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas putida W619] Length = 427 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 10/106 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+EI LD+Y+IGQ+ AK+ +++A+ N ++R + RD EL NILL+GP Sbjct: 67 SPKEISGILDQYVIGQERAKKVLSVAVYNHYKR----LNQRDKKGDEVELGKSNILLIGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 123 TGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 241 DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFG 300 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY L + E + L+F D++ A+A Sbjct: 301 LIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYARLFEMESVDLEFRSDALKAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + +E VVID Sbjct: 361 RKALERKT-----GARGLRSILEGVLLDTMYEIPSQKEVSKVVID 400 >gi|117620337|ref|YP_856543.1| ATP-dependent protease ATP-binding subunit ClpX [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|226706638|sp|A0KJU2|CLPX_AERHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117561744|gb|ABK38692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 424 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + ++ EL NILL+GPTG GK Sbjct: 66 TPHEIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRSGSESGGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGAEVKSKSAKATLSESFAKVEPEDLIKY 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+++ IL + ++ L QY L EG+ L+F +D+++A+ Sbjct: 299 GLIPEFIGRLPVVATLTELDEAALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + L VVID ++ Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLDGVSKVVIDETVIK 404 >gi|237708013|ref|ZP_04538494.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 9_1_42FAA] gi|265754200|ref|ZP_06089389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_33FAA] gi|229457999|gb|EEO63720.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 9_1_42FAA] gi|263234909|gb|EEZ20464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_33FAA] Length = 416 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ DAKR +++A+ N ++R D D E+ NI++VG TG GKT Sbjct: 69 PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E ++ L+ VA V E+ R Sbjct: 129 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 180 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 181 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 240 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 241 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 301 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D+ F + K + ++ + +G Sbjct: 361 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 406 >gi|302344372|ref|YP_003808901.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075] gi|301640985|gb|ADK86307.1| ATPase AAA-2 domain protein [Desulfarculus baarsii DSM 2075] Length = 583 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 7/113 (6%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPK 54 ++ F+ P ++V+ LD+YI+ Q++AK +A + + R + + L+++ ++ Sbjct: 53 RIKFDLKPDDLVAYLDQYIVRQEEAKAVLATKICTHFNRAKYLSRLQNDDPSDGVGMIKN 112 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTGVGKT + + +A G PF+K + TKF+E GYVG +VE +IRDLV Sbjct: 113 NILLIGPTGVGKTYMIKLIADKLGVPFVKADATKFSETGYVGGDVEDLIRDLV 165 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 93/235 (39%), Gaps = 65/235 (27%) Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG 281 D D + D+ D I++ + +GIV+LDE DKI G VSR GVQR LL +E Sbjct: 156 DVEDLIRDLVREAEDDIELAQ-FGIVYLDEVDKIAGTKGLLGPDVSRSGVQRALLKPMEE 214 Query: 282 SSVSTKYGS----------------------INTDHILFIASGAF--------------- 304 + V K +NT HILFI SGAF Sbjct: 215 TEVDLKVAHDPISQIQAIEQYRKTGRAERRLVNTRHILFIMSGAFGELAEVIRRRRNKAQ 274 Query: 305 -----------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 H ADL+ E GR PV V L L D IL + Sbjct: 275 LGFSSQMRAQLDDQAILHEVTGADLVEFGFETEFVGRLPVTVVLDKLEADDLHQILRNPN 334 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 + +I+ K GI L F ++++ LA+ A L + GAR L +V ERV Sbjct: 335 NPVIISKKRDFAAYGIELRFEDEALRKLAEEAATLGT-----GARALVSVCERVC 384 >gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio furnissii CIP 102972] gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio furnissii CIP 102972] gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC 11218] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPREIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKSLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDQEALIQILCEPKNALTKQYAALFELENVNLEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + E + VVID Sbjct: 361 AARAMKRKT-----GARGLRSILENVLLETMYELPSMTEVEKVVID 401 >gi|119476203|ref|ZP_01616555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2143] gi|119450830|gb|EAW32064.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2143] Length = 276 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + + ++ EL NILLVGPTG G Sbjct: 69 TPVEIKEILDEYVIGQKRAKKVLAVAVYNHYKRLRYSQEKKEQVELGKSNILLVGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 KTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 243 DTSNILFICGGAF 255 >gi|107101234|ref|ZP_01365152.1| hypothetical protein PaerPA_01002267 [Pseudomonas aeruginosa PACS2] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R D +D EL NIL++GPTG G Sbjct: 67 APKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDIELGKSNILMIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ A+A Sbjct: 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E +L D + Q+ VVID Sbjct: 360 HKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399 >gi|328952153|ref|YP_004369487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca acetoxidans DSM 11109] gi|328452477|gb|AEB08306.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfobacca acetoxidans DSM 11109] Length = 417 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI +++D Y+IGQ+ AK+ +++A+ N ++R ++ EL NILL+GPTG GKT Sbjct: 66 PAEIKNQIDEYVIGQERAKKILSVAVYNHYKRINSRVEMDGVELTKSNILLIGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE II +L+ VA Sbjct: 126 LLAQTLARILNVPFTIADATTLTEAGYVGEDVENIILNLLQVA 168 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTMASVPPKGGRKHPQQEFVKV 237 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI GAF+ + +P DLL Sbjct: 238 DTTNILFICGGAFNGLEDIINTRIGKKTMGFVADIQSRVHRKQGKTLALVQPQDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL + + L+ QY++L++ E + L FTE ++ A++ Sbjct: 298 IPEFVGRLPVIATLEELDEEALVRILKEPRNALVKQYQKLLEMEQVHLRFTEGALAAISR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A+ S GAR L+ ++E+ + DI + ++ + +I+ E + H Sbjct: 358 EALKRRS-----GARGLRAILEQAMLDIMYDIPSMKNVRECLINEEVILKH 403 >gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TM 11079-80] gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TM 11079-80] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401 >gi|29349251|ref|NP_812754.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides thetaiotaomicron VPI-5482] gi|253573098|ref|ZP_04850489.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6] gi|46576551|sp|Q8A128|CLPX_BACTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29341159|gb|AAO78948.1| ATP-dependent Clp protease ATP-binding subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251837321|gb|EES65421.1| ATP-dependent protease ATP-binding subunit [Bacteroides sp. 1_1_6] Length = 414 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y + + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQL 403 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|158336586|ref|YP_001517760.1| ATP-dependent protease ATP-binding subunit ClpX [Acaryochloris marina MBIC11017] gi|189082482|sp|B0C146|CLPX_ACAM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158306827|gb|ABW28444.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acaryochloris marina MBIC11017] Length = 447 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD--ELMPKNILLV 59 PR+I S LD ++IGQ +AK+ +++A+ N ++R + A+L D EL NILL+ Sbjct: 81 PRDIKSYLDEHVIGQDEAKKVLSVAVYNHYKRLSISQASADSVAELDDAIELQKSNILLI 140 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 141 GPTGCGKTLLAQTLAQMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R AD+L Sbjct: 261 DTTNILFICGGAFVGLDKIIEQRTGKKAMGFIQDGELRAKEQRTADMLRDLEAEDLVKFG 320 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV + +L++ ILT+ + L+ QY++L++ + + L+F D+I A+A Sbjct: 321 MIPEFTGRIPVMSVIDALDEDVLCQILTEPRNALVKQYQKLLRMDRVELEFQPDAIRAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 381 QEAYRRRT-----GARALRAIVEEIMLDVMY 406 >gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae V52] gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O395] gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 1587] gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae M66-2] gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae BX 330286] gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae B33] gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TMA 21] gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC9] gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae bv. albensis VL426] gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae 12129(1)] gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae MJ-1236] gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae AM-19226] gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10] gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera CIRS 101] gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC341] gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae INDRE 91/1] gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC27] gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385] gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MAK 757] gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae V52] gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 1587] gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O395] gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae AM-19226] gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae M66-2] gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae O395] gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae 12129(1)] gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae bv. albensis VL426] gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC9] gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae TMA 21] gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae B33] gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae BX 330286] gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae MJ-1236] gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10] gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera CIRS 101] gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC341] gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae RC27] gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae INDRE 91/1] gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385] gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MAK 757] gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholerae LMA3894-4] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401 >gi|282900540|ref|ZP_06308484.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii CS-505] gi|281194593|gb|EFA69546.1| ClpX, ATPase regulatory subunit [Cylindrospermopsis raciborskii CS-505] Length = 427 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59 PREI + LD ++IGQ +AK+ +++A+ N ++R + P + EL NILL+ Sbjct: 63 PREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVAQGKANDKSPGEDSVELQKSNILLI 122 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 123 GPTGCGKTLLAQSLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVANLDVEEAQR 182 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 183 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 242 Query: 292 NTDHILFIASGAF---------HVSR--------------------------PADL---- 312 +T +ILFI GAF V + P DL Sbjct: 243 DTSNILFICGGAFVGLEKVVDHRVGKKSMGFVQSGEGQSREKRVATTLKQLEPDDLVKFG 302 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ ++ L++ ILT S L+ QY++L+K + + L+F E+++ A+A Sbjct: 303 MIPEFIGRMPMVAVVEPLDEDALMAILTQPRSALVKQYQKLLKMDNVNLEFKEEALSAIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 363 QEAYRRKT-----GARALRGIVEELMLDVMY 388 >gi|153006263|ref|YP_001380588.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter sp. Fw109-5] gi|152029836|gb|ABS27604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter sp. Fw109-5] Length = 412 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y++GQ+ AK+ +A+A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 61 PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE II +L+ A Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAA 163 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQV 232 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 233 DTTNILFICGGAFCGLEQIIERRSGGRSLGFGSDVTSKSEKNIGELLAMVEPDDLLKFGM 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT + L+ QYK L++ +G+ L FT+ ++ A+A Sbjct: 293 IPEFVGRLPVITSLEELDEPALIEILTKPRNALVKQYKRLLEMDGVSLKFTDGALKAIAR 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A T GAR L+ ++E + DI + Sbjct: 353 AA-----TKNKAGARGLRAILESAMLDIMY 377 >gi|2460279|gb|AAB80745.1| heat-shock protein HslU [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 128 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 P G L +F +G ++K ++ ++ L+ +E +L++ + + +D+I V Sbjct: 17 PPGMEEMTSQLQSMFQN-LGGQKQKPRKLKIKDAMKLLVEEEPAKLVNPEELKQDAIDAV 75 Query: 242 ENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTD 294 E +GIVF+DE DKI R +G VSREGVQRDLLPLVEG +VSTK+G +NTD Sbjct: 76 EQHGIVFIDEIDKICKRGETSGPDVSREGVQRDLLPLVEGCTVSTKHGMVNTD 128 >gi|297562334|ref|YP_003681308.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846782|gb|ADH68802.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 424 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64 PREI LD Y+IGQ+ AK+A+++A+ N ++R + P + E+ NILL+GPTG Sbjct: 64 PREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 179 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAFH-------------------VSRPA---------------DLL---- 313 +T ++LFI GAF V RP DLL Sbjct: 239 DTTNVLFICGGAFAGLEKLIESRTGQQGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGM 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L++ ILT+ + L+ QY+ L + +G+ L+FT D+++A+A+ Sbjct: 299 IPEFVGRLPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAE 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E VL + + Sbjct: 359 QGI-----IRGTGARGLRAIIEEVLLSVMY 383 >gi|291533786|emb|CBL06899.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas hypermegale ART12/1] Length = 407 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI L++Y+IGQ +AK+++++A+ N ++R D EL NIL++GPTG GKT Sbjct: 66 PREIYDVLNQYVIGQDEAKKSLSVAVYNHYKRINRVTKQDDVELQKSNILMLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF + T TE GYVG +VE I+ L+ A N + ++++ Sbjct: 126 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADNDIEQAQK 177 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG----------S 290 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEGMLQ 237 Query: 291 INTDHILFIASGAFHVSR----------------------------------PADLL--- 313 I+T +ILFI GAF P DLL Sbjct: 238 IDTTNILFICGGAFDGIEKIIDARLGKKSLGFGADIKSKRKQTTGEILKNVLPEDLLKCG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L+SL + IL ++ L+ QY +L++ +G+ L F E+++ +A Sbjct: 298 LIPEFIGRVPVVVTLESLTEDALVDILVKPKNALVKQYGKLLEMDGVKLHFDEEALHLIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++ER++ D+ F Sbjct: 358 KEALERKT-----GARGLRSIIERIMRDVMF 383 >gi|86605508|ref|YP_474271.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. JA-3-3Ab] gi|123507236|sp|Q2JW64|CLPX_SYNJA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86554050|gb|ABC99008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. JA-3-3Ab] Length = 448 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PREI+ LD+Y+IGQ+ AK+ +++A+ N ++R A+ EL NIL++ Sbjct: 82 PREIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPNSLGAAELDEVELQKSNILVI 141 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++ LAR+ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 GPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF-------------------------HVSR------------PADLL- 313 +T +ILFI GAF V+R P DL+ Sbjct: 262 DTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLAVTREQRLADALKALEPEDLIK 321 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L L++ ILT ++ ++ Q ++L++ +G+ L+F +I A Sbjct: 322 YGMIPEFIGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAISA 381 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A + GAR L+ ++E ++ D+ + ++ K V I AE V Sbjct: 382 IAKEAYRRKT-----GARALRAIVEELMLDVMYEVPSRRDIKYVRITAEMV 427 >gi|322418660|ref|YP_004197883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. M18] gi|320125047|gb|ADW12607.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. M18] Length = 417 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65 P+EI LD Y+IGQ AK+ +A+A+ N ++R + P D+ E+ NILL+GPTG G Sbjct: 66 PQEIKEVLDEYVIGQARAKKVLAVAVYNHYKRVEATTKPGDV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQAA 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTIASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILF+ GAF V + P DLL Sbjct: 238 DTTNILFVCGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ IL + ++ LI QY++L + E + L FT+ S+ A+A Sbjct: 298 IPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFEMEHVKLKFTDGSLIAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S K VVI E + Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQSMVKEVVISEEVI 400 >gi|145589118|ref|YP_001155715.1| ATP-dependent protease ATP-binding subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226706594|sp|A4SXD7|CLPX_POLSQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145047524|gb|ABP34151.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 453 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 29/141 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD----------------- 49 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R Q LP ++ Sbjct: 67 TPHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKES 126 Query: 50 -----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 EL NILL+GPTG GKT +++ LAR+ PF+ + T TE GYVG + Sbjct: 127 KLPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186 Query: 99 VEQIIRDLVDVAINIVRESRR 119 VE II+ L+ V +++R Sbjct: 187 VENIIQKLLQACDYNVEKAQR 207 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 267 Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 268 DTTNILFICGGAFDGLEKVIQQRTAKTGIGFNATVPGKDERGVSDLLIEVEPEDLIKFGL 327 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY+ L+ EG L+ +++ A+A Sbjct: 328 IPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAK 387 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + L+ + VVID Sbjct: 388 KAIARKT-----GARGLRSILEGSLMDVMYDLPSLKNVQKVVID 426 >gi|332637218|ref|ZP_08416081.1| ATP-dependent protease ATP-binding subunit ClpX [Weissella cibaria KACC 11862] Length = 417 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 5/108 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE---LMPKNILLVGPT 62 +P+EIV L+ Y+IGQ +AKR +A+A+ N ++R L D E L NI ++GPT Sbjct: 64 TPQEIVDNLNSYVIGQDEAKRTLAVAVYNHYKRVNAMLTGDTGAEGVELQKSNIAMIGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT I++ +A+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQI 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 241 DTTNILFIVGGAFAGIEQMVKERVGAKVIGFGTDSKTVQFKNTDKSIMQQVVPEDLMSFG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L+ L + D ILT+ ++ L+ QY+ L+ EG+ L FT +++ A+A Sbjct: 301 LIPEFIGRLPILTALEELTEDDLVRILTEPKNALVKQYQALLALEGVALTFTPEALKAMA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L++++E + D+ F Sbjct: 361 HLAIERET-----GARGLRSIIEETMRDVMF 386 >gi|331088165|ref|ZP_08337085.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA] gi|330408821|gb|EGG88284.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 3_1_46FAA] Length = 497 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+A+A+A+ N ++R + +D D E+ N+L++GPTG G Sbjct: 142 APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 199 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V E EQ Sbjct: 200 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 253 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TSN R+V + ++ G Sbjct: 254 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 283 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++NT Sbjct: 254 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 313 Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314 +ILFI +GAF +++ A ++P Sbjct: 314 KNILFICAGAFPDLEDIIKERLTKKASMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 373 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + + ++ QY++L+ + + L F + +++ +A+ A Sbjct: 374 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 433 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 434 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 474 >gi|218781695|ref|YP_002433013.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763079|gb|ACL05545.1| ATPase AAA-2 domain protein [Desulfatibacillum alkenivorans AK-01] Length = 593 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 6/112 (5%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELM---PKN 55 KL FN P E++S LD+YI+ Q AK ++ + NR RR +L+ N Sbjct: 55 KLNFNLKPEELISYLDQYIVKQDRAKAVLSTKICTHYNRVRRAMESDKKGPDLIGSIKNN 114 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +LL+GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE ++RDLV Sbjct: 115 VLLLGPTGVGKTYLIKLIAKKIGVPFVKGDATKFSETGYVGGDVEDLVRDLV 166 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 91/222 (40%), Gaps = 67/222 (30%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY------- 288 D +++ + YGI+++DE DKI A + G VSR GVQR LL +E + V K Sbjct: 171 DDVELAQ-YGIIYIDEIDKIAAAHNMMGADVSRTGVQRALLKPMEETEVELKVPHDPVSM 229 Query: 289 ---------------GSINTDHILFIASGAF----------------------------- 304 INT +ILFI SGAF Sbjct: 230 IQELERFRRTGQRDASRINTKNILFIMSGAFGDLGEIIKKRMNEKGMGFSAKISSQKEDF 289 Query: 305 ----HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 HV + DL+ E GR PV L++L D IL + + LI+ K Sbjct: 290 KYLRHV-KSEDLIKYGFESEFVGRLPVITVLETLAAEDLYTILRNPNNPLIIGKKLDFGA 348 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 GI + FT++++ ALA A + GAR L + +E L Sbjct: 349 YGIDIRFTDNALKALAQKAYEQRT-----GARGLVSAIENAL 385 >gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 417 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I ELD+Y+IGQ AKR +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 64 PMQIKEELDQYVIGQDRAKRVLSVAVYNHYKRISQMDVDSSTELQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQILARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASIPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD-----------------LL 313 +T +ILFI GAF S D L+ Sbjct: 236 DTTNILFIVGGAFDGIEEIVKNRLGKKTIGFGAEQESGKVDDDNWNRFLTTGDLVKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ +D ILT+ ++ LI QY++L+ +G+ L+F ++ +AD+ Sbjct: 296 PEFIGRIPIITTLDRLDSADLVRILTEPKNALIKQYQKLLSLDGVDLEFEPAAVKQIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ +GAR L+T++E + DI + S SD+ + V+I E + Sbjct: 356 AIERK-----MGARGLRTIIENAMMDIMYRTPSESDISK--VIITPETI 397 >gi|239995518|ref|ZP_04716042.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas macleodii ATCC 27126] Length = 424 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + D+ + EL NILL+GPTG GK Sbjct: 68 PSEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312 +T ILFI GAF +S P DL Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ LN+ IL + ++ + QY L E + L+F +D+++A+ Sbjct: 300 GLIPEFIGRLPVVTSLEELNEEALIQILREPKNAITKQYGALFSMEDVELEFRDDALNAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL D + +++ VVID +R Sbjct: 360 AKKAMDRKT-----GARGLRSIVEAVLLDTMYDLPSMEDVSKVVIDETVIR 405 >gi|327480674|gb|AEA83984.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas stutzeri DSM 4166] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R Q EL NILL+GPTG GK Sbjct: 67 APKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTRNILFICGGAFAGLEKVIQSRSTQGGIGFNAEVRSKDPGKKIGEALRAVEPDDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ A+A Sbjct: 300 LIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEFRPDALKAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + ++ VVID Sbjct: 360 HRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 399 >gi|308446478|ref|XP_003087188.1| hypothetical protein CRE_23295 [Caenorhabditis remanei] gi|308260041|gb|EFP03994.1| hypothetical protein CRE_23295 [Caenorhabditis remanei] Length = 436 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 7/108 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGPT 62 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ P D E+ NILL+GPT Sbjct: 63 PHEIRAALDQYVIGQDTAKKTLSVAVYNHYKRLKVSQTGHKPKDAV-EIAKSNILLIGPT 121 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LARL PF + T TE GYVG +VE II+ L+ A Sbjct: 122 GSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIIQKLLQKA 169 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 63/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T +ILFI GAF +V D Sbjct: 239 DTANILFICGGAFSGLEKVVQQRQEKGGIGFTANVKNKDDSKKVSELFRQVEAADLVKFG 298 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT+ ++ L QY+ L + E + L F + ++ A+A Sbjct: 299 LIPEFIGRLPVIATLEELDQEALMQILTEPKNALTRQYQYLFEMENVDLLFEDSALRAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ N+ GAR L++++E VL + + S SD+ TV+I+ Sbjct: 359 KKALERNT-----GARGLRSILENVLLETMYDLPSRSDI--GTVIIN 398 >gi|304395500|ref|ZP_07377383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp. aB] gi|308185909|ref|YP_003930040.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans C9-1] gi|304356794|gb|EFM21158.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pantoea sp. aB] gi|308056419|gb|ADO08591.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pantoea vagans C9-1] Length = 423 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKASEGELLSQCEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + + + + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVID 399 >gi|219685275|ref|ZP_03540095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia garinii Far04] gi|219673371|gb|EED30390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia garinii Far04] Length = 435 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D ++++I QY + K + + L F +D+++++ D A Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMKILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 68 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172 >gi|332141944|ref|YP_004427682.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas macleodii str. 'Deep ecotype'] gi|327551966|gb|AEA98684.1| ATP-dependent protease ATP-binding subunit ClpX [Alteromonas macleodii str. 'Deep ecotype'] Length = 424 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + D+ + EL NILL+GPTG GK Sbjct: 68 PTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312 +T ILFI GAF +S P DL Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ LN+ IL + ++ + QY L E + L+F +D+++A+ Sbjct: 300 GLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSMEDVELEFRDDALNAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + + + VVID +R Sbjct: 360 AKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSMDDVSKVVIDETVIR 405 >gi|298384792|ref|ZP_06994351.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 1_1_14] gi|298261936|gb|EFI04801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 1_1_14] Length = 414 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +GI L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 AV +GAR L++++E ++ D+ F +K + +Y + + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQL 403 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDSGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|256396399|ref|YP_003117963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Catenulispora acidiphila DSM 44928] gi|256362625|gb|ACU76122.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Catenulispora acidiphila DSM 44928] Length = 438 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 P+EI LD Y+IGQ++AK+++++A+ N ++R Q R+ EL NILL+ Sbjct: 64 PKEIYDFLDEYVIGQENAKKSLSVAVYNHYKRVQAGDYQRERGGRRGEQIELAKSNILLL 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 184 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVSSVPPQGGRKHPHQEFLQI 243 Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADLL---- 313 +T ++LFI +GAF V++ P DLL Sbjct: 244 DTTNVLFIVAGAFEGLDKIVDSRVNKRGMGFTAQLRSRYDVDTTDVFADVLPEDLLKYGM 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L+++ IL + + LI QY++LM+ +G+ L F +D+++A+AD Sbjct: 304 IPEFVGRLPVVTSVHKLDRAALVRILVEPRNALIKQYQKLMELDGVELVFEDDAVEAIAD 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + S SD+ TVVI E VR H+ Sbjct: 364 QAI-LRGT----GARGLRAIMEEVLMSVMYEVPSHSDV--GTVVITGEVVREHV 410 >gi|197105277|ref|YP_002130654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phenylobacterium zucineum HLK1] gi|238690156|sp|B4RCN8|CLPX_PHEZH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|196478697|gb|ACG78225.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phenylobacterium zucineum HLK1] Length = 420 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NILL+GPTG GK Sbjct: 65 TPKEIREVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKNNDVELGKANILLIGPTGTGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARIIDVPFTVADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V+ P + L Sbjct: 238 DTTNILFICGGAFAGLEKIISARGQGTSIGFGAKVADPDERRTGEIFRQVEPDDLLRFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ ILT+ ++ + QY L + E + L FTED++ A+A Sbjct: 298 IPEFIGRLPVIATLDDLDEKALVKILTEPKNAFVKQYVRLFEMENVGLTFTEDALMAVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E VL D + Sbjct: 358 KAIQRKT-----GARGLRSILEGVLLDTMY 382 >gi|86159771|ref|YP_466556.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] gi|197123825|ref|YP_002135776.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter sp. K] gi|220918590|ref|YP_002493894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-1] gi|85776282|gb|ABC83119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] gi|196173674|gb|ACG74647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter sp. K] gi|219956444|gb|ACL66828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-1] Length = 412 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y++GQ+ AK+ +A+A+ N ++R + + D EL NILL+GPTG GKT Sbjct: 61 PSEIKTILDEYVVGQERAKKTLAVAVHNHYKRIESRVSIDDVELQKSNILLLGPTGSGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE II +L+ A Sbjct: 121 LLAQTLAKILNVPFTIADATTLTEAGYVGEDVENIIVNLLQAA 163 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 173 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPKGGRKHPQQEFLQV 232 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 233 DTTNILFICGGAFCGLEQIIERRSGGRSLGFGTDVKSKTEKNVGELLAMVEPDDLLKFGM 292 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT + L+ QYK+L++ +G+ L FT+ ++ A+A Sbjct: 293 IPEFVGRLPVITSLEELDQPALVDILTRPRNALVKQYKKLLEMDGVNLKFTDGALVAIAR 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E + DI + Sbjct: 353 AAMKNKA-----GARGLRAILENAMLDIMY 377 >gi|7594817|dbj|BAA94669.1| ATPase subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 423 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRTHLDDYVIGQEQAKKVLAXAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|241896578|ref|ZP_04783874.1| ATP-dependent protease ATP-binding subunit [Weissella paramesenteroides ATCC 33313] gi|241870170|gb|EER73921.1| ATP-dependent protease ATP-binding subunit [Weissella paramesenteroides ATCC 33313] Length = 415 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 9/110 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60 +PREIV L+ Y+IGQ DAK +A+A+ N ++R + A L E L NI ++G Sbjct: 64 TPREIVDNLNEYVIGQDDAKHTLAVAVYNHYKR--VNAKLTGETGIEGVDLQKSNIAVIG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT I++ +A+L PF + T TE GYVG +VE I+ L+ A Sbjct: 122 PTGSGKTYIAQSMAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 181 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNQEFIQI 240 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF P DL+ Sbjct: 241 DTTNILFIVGGAFAGIEQMVKERLGAKVIGFGTDAKTQQLQSSDKSIMQQVLPEDLMNFG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L+ L +SD ILT+ ++ L+ QY+ L+ E + L FT+D++ A+A Sbjct: 301 LIPEFIGRLPILTALEELTESDLVRILTEPKNALVKQYQALLALEDVDLKFTDDALKAMA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 +A+ + GAR L++++E V+ D+ F ++ T V+ E Sbjct: 361 HLAIERET-----GARGLRSIIEEVMRDVMFDVPSREDVTGVVITE 401 >gi|332140446|ref|YP_004426184.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327550468|gb|AEA97186.1| ATP-dependent protease ATP-binding subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 346 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + D+ + EL NILL+GPTG GK Sbjct: 68 PTEIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLR-NGDVHEGVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 127 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 66/166 (39%), Gaps = 54/166 (32%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF------------------------------HVS------RPAD---- 311 +T ILFI GAF +S P D Sbjct: 240 DTSKILFICGGAFAGLDKVIEQRAQKDTGIGFGATVKSKDNSKQISELFKQVEPEDLVKY 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 L+PE GR PV L+ LN+ IL + ++ + QY L E Sbjct: 300 GLIPEFIGRLPVVTSLEELNEDALIQILREPKNAITKQYGALFSME 345 >gi|15596999|ref|NP_250493.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas aeruginosa PAO1] gi|116049752|ref|YP_791441.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas aeruginosa UCBPP-PA14] gi|152987449|ref|YP_001348853.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas aeruginosa PA7] gi|218892244|ref|YP_002441111.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas aeruginosa LESB58] gi|254234896|ref|ZP_04928219.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa C3719] gi|254240195|ref|ZP_04933517.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa 2192] gi|296389807|ref|ZP_06879282.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas aeruginosa PAb1] gi|313110499|ref|ZP_07796384.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa 39016] gi|21263483|sp|Q9I2U0|CLPX_PSEAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122258863|sp|Q02KU5|CLPX_PSEAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214805|sp|A6V718|CLPX_PSEA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706595|sp|B7VB75|CLPX_PSEA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|9947785|gb|AAG05191.1|AE004606_5 ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa PAO1] gi|115584973|gb|ABJ10988.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa UCBPP-PA14] gi|126166827|gb|EAZ52338.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa C3719] gi|126193573|gb|EAZ57636.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa 2192] gi|150962607|gb|ABR84632.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas aeruginosa PA7] gi|218772470|emb|CAW28252.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa LESB58] gi|310882886|gb|EFQ41480.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pseudomonas aeruginosa 39016] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD+Y+IGQ+ AK+ +A+A+ N ++R D +D EL NIL++GPTG G Sbjct: 67 APKEIRTILDQYVIGQERAKKVLAVAVYNHYKRLN-QRDKKDDIELGKSNILMIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ A+A Sbjct: 300 LIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E +L D + Q+ VVID Sbjct: 360 RKALERKT-----GARGLRSILEGILLDTMYEIPSQQDVSKVVID 399 >gi|197121674|ref|YP_002133625.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter sp. K] gi|196171523|gb|ACG72496.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. K] Length = 367 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65 +PREI + L R++IGQ+ AKRA+AIA + +R + R+ + K N+LL+GPTG G Sbjct: 14 LTPREIHASLSRWVIGQEPAKRALAIAAYSHLKRVAMRRASREVAVQKSNVLLIGPTGCG 73 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LAR+ PF + T+FTE GY G++VE +I +L+ A + + +++R Sbjct: 74 KTHLARHLARVLEVPFHVADATEFTEAGYYGKDVETMIGELLLRASHSIEDAQR 127 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 52/223 (23%) Query: 245 GIVFLDEFDKIVARD--SGNGIG---VSREGVQRDLLPLVEGSSVSTKYG---------- 289 GIVF+DE DKI R + G G + EGVQ+ LL L+EG V G Sbjct: 128 GIVFVDEVDKIARRSQPARGGAGQRDIGGEGVQQALLKLLEGREVHVPLGLGGPQWARRD 187 Query: 290 --SINTDHILFIASGAFH--VSRPAD----------------------------LLPEIQ 317 ++T ILF+ +G F + D +L E Sbjct: 188 TVPVDTTDILFVCAGTFSDLFAYAGDGRSLGFGARSGAAAARRRIRPRDLVEYGMLAEFL 247 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR PV V L L +LT ++ Q + L+ +G+ LD T+ ++ L A Sbjct: 248 GRLPVMVQLDELGPEALLEVLTGPPDAVLRQMRALLAADGVELDVTDGALRELVAFARER 307 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L+ V+E VL ++ F A + V++DA +VR Sbjct: 308 GA-----GARGLRAVVEEVLAELLFEAPERSGTRVLLDAGWVR 345 >gi|54309797|ref|YP_130817.1| ATP-dependent protease ATP-binding subunit ClpX [Photobacterium profundum SS9] gi|61211506|sp|Q6LNW1|CLPX_PHOPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46914235|emb|CAG21015.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium profundum SS9] Length = 426 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFSADVRSKSEERTISDLFKKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ E + L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDQEALVKILREPKNALTKQYAALLELENVELEFRDDALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A A+ + GAR L++++E VL D + S + VVID Sbjct: 361 AHKAMARKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVID 401 >gi|312792982|ref|YP_004025905.1| ATP-dependent clp protease, ATP-binding subunit clpx [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180122|gb|ADQ40292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor kristjanssonii 177R1B] Length = 433 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDLYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|291522586|emb|CBK80879.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus catus GD/7] Length = 422 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 50/205 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKYGSI-- 291 GI+++DE DKI + S I VS EGVQ LL L+EG+ V+ G+I Sbjct: 164 GIIYIDEIDKIGRKGSNPSITRDVSGEGVQAALLKLIEGAEVTFPANGGRKNPSGGNIPF 223 Query: 292 NTDHILFIASGAFH-------------------VSRPAD-------------LLPEIQGR 319 +T ++LFI GAF + AD ++PE GR Sbjct: 224 DTSNVLFIVGGAFEGMFDDNDKQSSSIGFINSASCKTADEHEITAEKLKAFGMMPEFIGR 283 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 FPV L+ L+ +D + +LT+ + NL+ +YK L+K + + L F E+++D +A A Sbjct: 284 FPVIAQLEELSTNDLKRVLTEPKDNLVDEYKALLKADNVNLVFEEEALDKIAQKAAEKK- 342 Query: 380 TVGDIGARRLQTVMERVLEDISFSA 404 IGAR L+++ME ++ DI F A Sbjct: 343 ----IGARGLRSIMENMMLDIMFDA 363 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P++I+S L+ YIIGQ+ AK+ +++A+ N +R D ++ NILL GPTG GKT Sbjct: 55 TPKKIMSILNDYIIGQEKAKKILSVAVYNHKKRLY---DKTGKIRKSNILLAGPTGSGKT 111 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF+ V T T+ GYVG +VE II LV A + +++R Sbjct: 112 YLAQTIAKVLDVPFVIVNATSLTQSGYVGDDVESIITKLVMKANGNIDKAQR 163 >gi|291616550|ref|YP_003519292.1| ClpX [Pantoea ananatis LMG 20103] gi|291151580|gb|ADD76164.1| ClpX [Pantoea ananatis LMG 20103] gi|327392982|dbj|BAK10404.1| ATP-dependent Clp protease ATP- binding subunit ClpX [Pantoea ananatis AJ13355] Length = 423 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVETGSGIGFGATVKGKSQKATEGELLSQCEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILREPKNALTKQYQALFNLEGVDLEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + + + + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMDDVEKVVID 399 >gi|229828303|ref|ZP_04454372.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM 14600] gi|229792897|gb|EEP29011.1| hypothetical protein GCWU000342_00361 [Shuttleworthia satelles DSM 14600] Length = 419 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 64/102 (62%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+E+ + LD Y+IGQ +AK+ +++A+ N ++R EL N+L++GPTG GKT Sbjct: 74 PKELKAFLDEYVIGQDEAKKVLSVAVYNHYKRIMRGDKTDVELQKSNVLMLGPTGSGKTL 133 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR G PF + T TE GYVG +VE II L+ A Sbjct: 134 LAQTLARTLGVPFAIADATTLTEAGYVGEDVENIILKLIQAA 175 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 57/207 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKIIEGTMASVPPQGGRKHPQQELIQI 244 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PAD-----L 312 +T +ILFI GAF V + P D L Sbjct: 245 DTTNILFICGGAFDGLEKIIEQRIEAGSMGFGANIVDKKNRRIGDLLRQVLPQDFVKFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ V L L + D ILT+ +++L+ QY+ L + L FTE+++ +A Sbjct: 305 IPEFIGRVPINVALNQLTEEDMIHILTEPKNSLVKQYEALFAMDDTRLTFTEEALREIAK 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLED 399 ++ + GAR L+++ME V+ D Sbjct: 365 KSIERKT-----GARGLRSIMENVMMD 386 >gi|225378749|ref|ZP_03755970.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM 16841] gi|225209408|gb|EEG91762.1| hypothetical protein ROSEINA2194_04419 [Roseburia inulinivorans DSM 16841] Length = 425 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ AK+ +++A+ N ++R +D EL NIL++GPTG GK Sbjct: 68 IKPEEMKAFLDEYVIGQDKAKKVLSVAVYNHYKRIMAGSDSDVELQKSNILMLGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 TLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 171 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 59/213 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 179 QHGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELI 238 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPAD--- 311 I+T +ILFI GAF HV P D Sbjct: 239 PIDTTNILFICGGAFDGLEKIIETRLDQKSIGFNAEVHAKDEYNVGEVLKHV-LPQDFVK 297 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 L+PE GR PV V L L+K IL + ++ L+ QYK+L + +G+ L+F +D+++A Sbjct: 298 FGLIPEFIGRVPVTVTLDMLDKDAMVRILCEPKNALVKQYKKLFELDGVNLEFDKDALEA 357 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + D A+ + GAR L+ +ME V D+ + Sbjct: 358 IVDKALERKT-----GARGLRAIMEAVTLDLMY 385 >gi|95930402|ref|ZP_01313138.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfuromonas acetoxidans DSM 684] gi|95133442|gb|EAT15105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfuromonas acetoxidans DSM 684] Length = 414 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y++GQ AK+ +++A+ N ++R + A D E+ NILL+GPTG GK Sbjct: 63 APAEIRATLDDYVVGQNWAKKVLSVAVYNHYKRIRYAAKNDDVEIQKSNILLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ LV A + +++R Sbjct: 123 TLLAQTLARVLNVPFAMADATNLTEAGYVGEDVENIVLSLVQAADYDIEKAQR 175 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ + Sbjct: 176 GIIYIDEIDKIARKSESPSITRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQEFIKV 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 236 DTANILFICGGAFSGLEDVISQRIGKKSIGFGANVRMPSETTLGKLLKDIEPGDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ LIL + ++ L+ QY++L+ E + L FT+ ++ A+A Sbjct: 296 IPEFIGRLPVIATLEELDEEALVLILKEPKNALVRQYQKLLDLEDVALKFTDGALVAVAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L++++E V+ DI + Sbjct: 356 EAARRKT-----GARGLRSILEEVMLDIMY 380 >gi|167522799|ref|XP_001745737.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776086|gb|EDQ89708.1| predicted protein [Monosiga brevicollis MX1] Length = 595 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGS-------SVSTKYG----SI 291 GIVFLDE DKI + G VS EGVQ+ LL L+EG+ S S G SI Sbjct: 330 GIVFLDEIDKIGSPKGGFVATRDVSGEGVQQALLKLLEGTIVQVPDKSASKVRGQESYSI 389 Query: 292 NTDHILFIASGAFH-----------------------VSRPAD----------------L 312 +T +ILFI SGAF+ P D L Sbjct: 390 DTSNILFIGSGAFNGLEKLISNRQAKGSLGFNATLKDPKAPVDGKLLRSVISTDLVKFGL 449 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GRFP VHL++L+++D +LT+ + +L+ QYK L + + L +++A+AD Sbjct: 450 IPEFVGRFPCVVHLEALDRNDLIHVLTEPKHSLLSQYKGLFRMDNAELVLEPSALEAIAD 509 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ IGAR L++++E+VL D F +V+I+ + V Sbjct: 510 KALERG-----IGARGLRSILEQVLLDAMFDTPGSTHASVIINDKVV 551 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 11/120 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------LMPKNILLV 59 PR+IV+ L+ Y++GQ AK+ +A+A+ N ++R + A+L++E NIL+ Sbjct: 212 PRQIVNTLNEYVVGQSYAKKVLAVAVYNHYKR--VSANLKEESSEVAHDTRFDKSNILMC 269 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++R LA + P + T T+ GYVG +VE ++ L+ V +++R Sbjct: 270 GPTGSGKTLLARTLAEILDVPIAIADCTSLTQAGYVGEDVESVLYKLLAACNFNVEQAQR 329 >gi|319763663|ref|YP_004127600.1| ATP-dependent clp protease, ATP-binding subunit clpx [Alicycliphilus denitrificans BC] gi|330824072|ref|YP_004387375.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans K601] gi|317118224|gb|ADV00713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans BC] gi|329309444|gb|AEB83859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alicycliphilus denitrificans K601] Length = 421 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + A D EL NILL+GPTG Sbjct: 67 TPAEIKANLDSYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDDVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR PF+ + T TE GYVG +VE I++ L+ V ++R Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLLQSCNYDVERAQR 181 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 59/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVKSKKQRSLTEVFQDIEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 302 IPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVDLEIRPAALKAIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 A+ + GAR L++++E+ L F ++ EK VV +A Sbjct: 362 KAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEA 402 >gi|313903080|ref|ZP_07836474.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermaerobacter subterraneus DSM 13965] gi|313466582|gb|EFR62102.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermaerobacter subterraneus DSM 13965] Length = 419 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R L + D EL NIL++GPTG GK Sbjct: 63 KPAEIKAFLDQYVIGQERAKKILSVAVYNHYKRIHLGGRIDDVELQKSNILMIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLAKLLNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIVYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 236 DTTNILFICGGAFEGLDKIIASRIGRRVMGFGAEVRSKQETNVGDILRHIMPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L +L++ ILT+ ++ L+ QY++L+ + + L+F +++ A+A Sbjct: 296 IPEFVGRLPVIATLDALDEDALVRILTEPKNALVKQYQKLLALDNVELEFEPEALRAIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ + Sbjct: 356 EALKRNT-----GARGLRAIVEELMLDLMY 380 >gi|294011931|ref|YP_003545391.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium japonicum UT26S] gi|292675261|dbj|BAI96779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sphingobium japonicum UT26S] Length = 422 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P+EI LD Y+IGQ AKR +++A+ N ++R P ++ EL NILLVGPTG Sbjct: 66 TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEV--ELAKSNILLVGPTGC 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ PF + T TE GYVG +VE II L+ + V +++R Sbjct: 124 GKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 178 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF HV+ P + L Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ + IL + ++ L+ QY +L E + L FT+D++ A+A Sbjct: 299 IPEFVGRLPVIATLEDLDVAALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F ++ VV+D + V Sbjct: 359 KAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401 >gi|212690530|ref|ZP_03298658.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855] gi|212666879|gb|EEB27451.1| hypothetical protein BACDOR_00012 [Bacteroides dorei DSM 17855] Length = 370 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 135 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIPV 194 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 195 NTKNILFICGGAFDGIERKIAQRLNTHVVGYSAAKDVVKIDRGNLMQYIAPQDLKSFGLI 254 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 255 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLEFQPEVFEYIVDK 314 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D+ F + K + ++ + +G Sbjct: 315 AIEYK-----LGARGLRSIVETIMMDVMFEIPSQKAKKYEVTLDFAKQQMG 360 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ DAKR +++A+ N ++R D D E+ NI++VG TG GKT Sbjct: 23 PKEIKEFLDQYIIGQDDAKRYLSVAVYNHYKRLLQKVDKDDIEIEKSNIIMVGSTGTGKT 82 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E ++ L+ VA V E+ R Sbjct: 83 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESLLTRLLQVADYNVAEAER 134 >gi|162148814|ref|YP_001603275.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] gi|209545438|ref|YP_002277667.1| ATP-dependent protease ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] gi|189044136|sp|A9HRV3|CLPX_GLUDA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161787391|emb|CAP56986.1| ATP-dependent Clp protease ATP-binding subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533115|gb|ACI53052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gluconacetobacter diazotrophicus PAl 5] Length = 419 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D E+ NILLVGPTG GK Sbjct: 64 TPKEICKVLDDYVIGQFYAKKVLSVAVHNHYKRLAHSQKNNDVEIAKSNILLVGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 124 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 176 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 236 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T ++LFI GAF +S P DLL Sbjct: 237 DTTNMLFICGGAFAGLDKIISARGKGSGIGFGADVQSPDERRTGAILRDVEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT ++ L+ QY L + EG+ L FT+D++ +A Sbjct: 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYARLFQMEGVKLTFTDDALKQVA- 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 L + GAR L+ +ME +L F L+ Sbjct: 356 ----LRAIARRTGARGLRAIMESILLSTMFDLPGLE 387 >gi|158423233|ref|YP_001524525.1| ATP-dependent protease ATP-binding subunit ClpX [Azorhizobium caulinodans ORS 571] gi|172047857|sp|A8HYF4|CLPX_AZOC5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158330122|dbj|BAF87607.1| ATP-dependent Clp protease ATP-binding subunit [Azorhizobium caulinodans ORS 571] Length = 422 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRKVLDDYVIGQDHAKKVLSVAVHNHYKRLNHATKHGDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------------HVSRPADL------------- 312 +T +ILFI GAF RP +L Sbjct: 238 DTTNILFICGGAFAGLDKIISSRSKGGTSIGFGAKVAPVEERRPGELFREVEPEDLLKYG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ + IL + ++ L+ QY+ L + E + L E+++ A+A Sbjct: 298 LIPEFIGRLPVLATLNDLDEAALKQILAEPKNALVKQYQRLFEMENVDLTIHEEALGAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E V Sbjct: 358 RKAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVV 401 >gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 623-39] gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae 623-39] Length = 391 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 32 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 85 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 86 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 133 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 146 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 205 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 206 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 265 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 266 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 325 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 326 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 366 >gi|329850565|ref|ZP_08265410.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis biprosthecum C19] gi|328840880|gb|EGF90451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Asticcacaulis biprosthecum C19] Length = 387 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 32 TPKEIREVLDDYVIGQSQAKKVLSVAVHNHYKRLNHAQKGNDVELAKSNIMLIGPTGSGK 91 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 92 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 144 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 145 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 204 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 205 DTTNILFICGGAFAGLEKIISGRGKGSSIGFGASVKDPEDRRTGEVLRDVEPDDLMKFGL 264 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ LI QY+ L + E + L+FT +++ ++A Sbjct: 265 IPEFIGRLPVLATLEDLDEVTLVKILTEPKNALIKQYQRLFEMENVSLNFTPEALMSVAR 324 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ V GAR L++++E +L D + +Q + VVI+ E V Sbjct: 325 KAI-----VRKTGARGLRSILEAILLDTMYELPTMQGVEEVVINGEVV 367 >gi|312876448|ref|ZP_07736432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor lactoaceticus 6A] gi|311796806|gb|EFR13151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor lactoaceticus 6A] Length = 432 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +D+++A+AD Sbjct: 296 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKDALEAIAD 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 356 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 400 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 62 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 166 >gi|311743053|ref|ZP_07716861.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium marinum DSM 15272] gi|311313733|gb|EFQ83642.1| ATP-dependent Clp protease ATP-binding subunit [Aeromicrobium marinum DSM 15272] Length = 422 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------DLRDELMPKNILLVGPT 62 P EI + L+ Y+IGQ+ AKR+++ A+ N ++R Q + D + EL NIL+VGPT Sbjct: 64 PHEIFAFLEGYVIGQEGAKRSLSTAVYNHYKRVQAQSAGGRGKDDQVELAKSNILMVGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF------------HVS----------------------RPADLL---- 313 +T ++LFI GAF VS P DLL Sbjct: 241 DTTNVLFIVGGAFAGLEEIIEQRNGKVSVGFNSEPSASTPTSAEKTYARVEPTDLLKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L+K ILT+ + L QY+ L + +GI L+FTED+ D +A+ Sbjct: 301 IPEFIGRLPVIASVNKLDKEALIRILTEPRNALSKQYERLFEIDGIELEFTEDAFDEMAE 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +A+ D GAR L++++E VL+ F + VV+D VR Sbjct: 361 LALKR-----DTGARGLRSIVEEVLQPTMFDVPSRDDAARVVVDGAVVR 404 >gi|307293096|ref|ZP_07572942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium chlorophenolicum L-1] gi|306881162|gb|EFN12378.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingobium chlorophenolicum L-1] Length = 422 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P+EI LD Y+IGQ AKR +++A+ N ++R P ++ EL NILLVGPTG Sbjct: 66 TPQEICDVLDDYVIGQNRAKRVLSVAVHNHYKRLNHGTKPGEV--ELAKSNILLVGPTGC 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ PF + T TE GYVG +VE II L+ + V +++R Sbjct: 124 GKTLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVEKAQR 178 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 179 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF HV+ P + L Sbjct: 239 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ + IL + ++ L+ QY +L E + L FT+D++ A+A Sbjct: 299 IPEFVGRLPVIATLEDLDVTALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F ++ VV+D + V Sbjct: 359 KAIERKT-----GARGLRSILEAILLDTMFDLPSMEGVGEVVVDKDVV 401 >gi|160945108|ref|ZP_02092334.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii M21/2] gi|158442839|gb|EDP19844.1| hypothetical protein FAEPRAM212_02627 [Faecalibacterium prausnitzii M21/2] gi|295105644|emb|CBL03188.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Faecalibacterium prausnitzii SL3/3] Length = 440 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ +AKR +++++ N ++R EL N+LL+GP+GVGK Sbjct: 82 MTPAEIKEGLDQYVIGQDEAKRVLSVSVYNHYKRILSGKGGDVELQKSNVLLLGPSGVGK 141 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 142 TLLAQTLAKMLGVPFAIADATTLTEAGYVGEDVENILLKLIQAA 185 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I V EGVQ+ LL ++EG S+V + G I Sbjct: 195 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 254 Query: 292 NTDHILFIASGAF-----HVSRPAD----------------------------------L 312 +T +ILFI GAF ++ R D L Sbjct: 255 DTTNILFICGGAFDGLDKYILRRTDKSALGFGSALKDNSTEAERALLRKVEPHDLVKFGL 314 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ +L + ++L+ QYKEL+ + + L FT++++ A+A Sbjct: 315 IPELIGRLPVITVLDDLDEDALVRVLKEPRNSLVKQYKELLGMDNVELTFTDEALHAIAR 374 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++VME +L I + Sbjct: 375 KTIERKT-----GARGLRSVMESILLPIMY 399 >gi|302874446|ref|YP_003843079.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium cellulovorans 743B] gi|307690947|ref|ZP_07633393.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium cellulovorans 743B] gi|302577303|gb|ADL51315.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium cellulovorans 743B] Length = 426 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI + LD+Y++GQ+ AK+++A+A+ N ++R + +++ + EL NILL+GPTG G Sbjct: 63 PMEIKTHLDQYVVGQESAKKSLAVAVYNHYKR--INSNIANDDVELQKSNILLLGPTGCG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTFLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 NT +ILFI GAF S+ P DLL Sbjct: 235 NTANILFICGGAFDGIEKIIEKRTSKGSMGFGADITSKKEKNIGETLKELMPGDLLKYGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL++ IL + ++ L+ QYK+L +G+ LDF E ++ A+A Sbjct: 295 IPEFVGRLPIVVTLQSLDEEALVKILYEPKNALVKQYKKLFAMDGVDLDFDEKALRAIAK 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ ++ GAR L+ ++E +++DI F S D+++ T++ D Sbjct: 355 EAIERST-----GARGLRAIIEDMMKDIMFEIPSKDDVKKVTILED 395 >gi|331003804|ref|ZP_08327296.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae oral taxon 107 str. F0167] gi|330411996|gb|EGG91393.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae oral taxon 107 str. F0167] Length = 427 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ AK+ +++A+ N ++R + E+ NIL++GPTG GK Sbjct: 63 LKPKEIKNFLDEYVIGQDSAKKVLSVAVYNHYKRIKSKKSAEVEIQKSNILMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EGS SV + G Sbjct: 175 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGSMASVPPQGGRKHPQQELIH 234 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF + P DL Sbjct: 235 IDTTNILFICGGAFDGLEKIVENRLSKGSIGFNSDVVEKNSKSVDELFKMVLPGDLTKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L L+K I+T ++ + QY++L + + + L+F E +++ +A Sbjct: 295 LIPEFIGRVPVTVSLDMLDKDALVQIMTKPKNAITKQYQKLFELDDVKLEFDEKAVEEVA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A+ IGAR L++++E V+ D+ + Sbjct: 355 NLALERK-----IGARGLRSILEGVMTDMMY 380 >gi|329962625|ref|ZP_08300573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides fluxus YIT 12057] gi|328529656|gb|EGF56554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides fluxus YIT 12057] Length = 414 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAARNTAVIDKNNLMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + + + LDF + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYVKLFEMDNVKLDFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E ++ D F + + V+ +Y R Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDSFVVTLDYAR 400 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD+Y+IGQ DAKR +++++ N ++R D E+ NI++VG TG GKT Sbjct: 67 PVEIKGFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKEGGDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|229163428|ref|ZP_04291379.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus R309803] gi|228619997|gb|EEK76872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus R309803] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404 >gi|146295916|ref|YP_001179687.1| ATP-dependent protease ATP-binding subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166214768|sp|A4XHW1|CLPX_CALS8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145409492|gb|ABP66496.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 433 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIERRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +++++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R + +D E+ NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDNRKDDVEIQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|300715592|ref|YP_003740395.1| ATP-dependent Clp protease ATP-binding protein ClpX [Erwinia billingiae Eb661] gi|299061428|emb|CAX58540.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia billingiae Eb661] Length = 424 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF +S+ D Sbjct: 239 DTSKILFICGGAFAGLDKVISQRVDTGTGIGFGATVKGTAEKATEGQLLEQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVDLEFREEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + + + + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEGALLNTMYDLPSMDDVEKVVID 399 >gi|219684284|ref|ZP_03539228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia garinii PBr] gi|219672273|gb|EED29326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia garinii PBr] Length = 435 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D ++++I QY + K + + L F +D+++++ D A Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 68 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172 >gi|71281243|ref|YP_270451.1| ATP-dependent protease ATP-binding subunit ClpX [Colwellia psychrerythraea 34H] gi|123631419|sp|Q47XL9|CLPX_COLP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71146983|gb|AAZ27456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Colwellia psychrerythraea 34H] Length = 424 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 SP EI LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 67 SPIEIRESLDEYVIGQDHAKKVLAVAVYNHYKR------LRNGDNHNGIELGKSNILLIG 120 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 121 PTGSGKTLLAQTLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 240 DTSKILFICGGAFAGLDKVVEQRNHTGTGIGFGAEVRGKDQEISLTDRLADVEPQDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L+ L+++ IL + ++ L Q+ L E + L+F D++ A+ Sbjct: 300 GLIPEFIGRLPVLATLRELDEAALIQILQEPKNALTKQFTALFDMENVELEFRSDALHAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL D + ++ +V+D ++ Sbjct: 360 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSMENVSKIVVDENTIK 405 >gi|15603842|ref|NP_246916.1| ATP-dependent protease ATP-binding subunit [Pasteurella multocida subsp. multocida str. Pm70] gi|13431416|sp|P57981|CLPX_PASMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|12722416|gb|AAK04061.1| ClpX [Pasteurella multocida subsp. multocida str. Pm70] Length = 411 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 62 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ LV Sbjct: 122 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLV 162 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 234 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313 +T ILFI GAF HV P DL+ Sbjct: 235 DTSKILFICGGAFAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKF 294 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ LI QY+ L E + L+F+ +++ A+ Sbjct: 295 GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAM 354 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E +L D + LQ EK +V Sbjct: 355 AKKALARKT-----GARGLRSIVEAILLDTMYDLPSLQHLEKVIV 394 >gi|298207460|ref|YP_003715639.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus HTCC2559] gi|83850096|gb|EAP87964.1| ATP-dependent protease ATP-binding subunit [Croceibacter atlanticus HTCC2559] Length = 410 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T++ILFIA GAF + R P DL + Sbjct: 234 DTENILFIAGGAFDGIDRKITKRLNMQAVGFSASLSEDQIERDNLLKYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV ++ L+K R ILT+ ++ +I QYK+L + + + T+ ++D + + Sbjct: 294 PEIIGRLPVLTYMNPLDKGTLRAILTEPKNAIIKQYKKLFEMDEVDFHITDGALDYIVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E + D F D EK + Y Sbjct: 354 AIEYQ-----LGARGLRSLCEEIFTDAMFDLPDSDEKEFKVTKAY 393 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P I + LD Y+IGQ+ KR +++A+ N ++R Q P+D E+ NI++VG TG GKT Sbjct: 62 PHAIKAFLDGYVIGQEHTKRVMSVAVYNHYKRLLQQPSDDDIEIQKSNIIMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I++ +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LIAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|224025974|ref|ZP_03644340.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM 18228] gi|224019210|gb|EEF77208.1| hypothetical protein BACCOPRO_02725 [Bacteroides coprophilus DSM 18228] Length = 386 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 151 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 210 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 NT +ILFI GAF V R P DL + Sbjct: 211 NTKNILFICGGAFDGIERKIAQRLNTNVVGYSAAKETVKVDRNNLMQYIAPQDLKSFGLI 270 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L + +G+ L+F + + + D Sbjct: 271 PEIIGRLPILTYLNPLDRQALRNILTEPKNSIIKQYVKLFEMDGVKLEFQPEVFEYIVDK 330 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L+ ++E ++ D+ F + + V+ EY + Sbjct: 331 AVEYK-----LGARGLRAIVETIMMDVMFDLPSRKVDSFVVTLEYAK 372 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD+Y+IGQ DAKR +++A+ N ++R P D E+ NI++VG TG GKT Sbjct: 39 PKDIKEFLDQYVIGQDDAKRYLSVAVYNHYKRLLQPVTKDDVEIEKSNIIMVGSTGTGKT 98 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V E+ R Sbjct: 99 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAADYNVEEAER 150 >gi|188996269|ref|YP_001930520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurihydrogenibium sp. YO3AOP1] gi|188931336|gb|ACD65966.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurihydrogenibium sp. YO3AOP1] Length = 408 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R ++L D E+ NILL+GPTG Sbjct: 58 TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLIGPTGS 117 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 118 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 163 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GIV++DE DKI A+ SG+ ++R EGVQ+ LL ++EG+ +V + G Sbjct: 173 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 231 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 I+T +ILFI GAF + +P DL+ Sbjct: 232 QIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFGADIKSKSEEKELLSLVQPEDLIKFGL 291 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ +LT+ ++ LI QYK L+ +GI L+FTED++ +A Sbjct: 292 IPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALREIAR 351 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ ++E ++ D+ + A + + K V+ID + V Sbjct: 352 EAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVV 394 >gi|153824131|ref|ZP_01976798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae B33] gi|126518350|gb|EAZ75573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae B33] Length = 339 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 62/159 (38%), Gaps = 54/159 (33%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPAD---- 311 +T ILFI GAF P D Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 L+PE GR PV L L+++ IL + ++ L QY Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQY 339 >gi|116512006|ref|YP_809222.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis subsp. cremoris SK11] gi|122940173|sp|Q02Z22|CLPX_LACLS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116107660|gb|ABJ72800.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactococcus lactis subsp. cremoris SK11] Length = 411 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 4/112 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRD-ELMPKNILLVGPTGV 64 +P+E+ L+ Y+IGQ+ AKRA+A+A+ N ++R A D EL NILL+GPTG Sbjct: 61 TPKEMFDHLNEYVIGQEKAKRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVR 115 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ + NI R Sbjct: 121 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIER 172 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 55/226 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 175 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQ 234 Query: 291 INTDHILFIASGAF--------------------HVSRPAD-----------------LL 313 I+T +ILFI GAF + + +D L+ Sbjct: 235 IDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLSDEDSYMQEIIAEDIQKFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ LI QYK+L+ + + L+F + ++ A+A Sbjct: 295 PEFIGRLPIVAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFKDGALMAIAKK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E V+ DI F +E T VI E V Sbjct: 355 AIERKT-----GARGLRSIIEEVMMDIMFEVPSHEEITKVIITEAV 395 >gi|228993213|ref|ZP_04153134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus pseudomycoides DSM 12442] gi|228999262|ref|ZP_04158842.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides Rock3-17] gi|229006809|ref|ZP_04164442.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides Rock1-4] gi|228754431|gb|EEM03843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides Rock1-4] gi|228760459|gb|EEM09425.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides Rock3-17] gi|228766539|gb|EEM15181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus pseudomycoides DSM 12442] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404 >gi|161504374|ref|YP_001571486.1| ATP-dependent protease ATP-binding subunit ClpX [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189044147|sp|A9MM22|CLPX_SALAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160865721|gb|ABX22344.1| hypothetical protein SARI_02485 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRIHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 359 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 >gi|118479638|ref|YP_896789.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus thuringiensis str. Al Hakam] gi|228917110|ref|ZP_04080668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929519|ref|ZP_04092538.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935791|ref|ZP_04098603.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229141213|ref|ZP_04269752.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST26] gi|229186714|ref|ZP_04313872.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BGSC 6E1] gi|118418863|gb|ABK87282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus thuringiensis str. Al Hakam] gi|228596727|gb|EEK54389.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BGSC 6E1] gi|228642254|gb|EEK98546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST26] gi|228823848|gb|EEM69668.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830098|gb|EEM75716.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842528|gb|EEM87618.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ ++ F Sbjct: 381 AIERKT-----GARGLRSIIEGLMLEVMF 404 >gi|51598864|ref|YP_073052.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia garinii PBi] gi|51573435|gb|AAU07460.1| ATP-dependent Clp protease, subunit X [Borrelia garinii PBi] Length = 435 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 241 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D ++++I QY + K + + L F +D+++++ D A Sbjct: 302 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 402 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 68 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172 >gi|53805231|ref|YP_113049.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] gi|61211759|sp|Q60BE7|CLPX2_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 2 gi|53758992|gb|AAU93283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] Length = 428 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTGV 64 P+EI LD Y+IGQ+ AKR +++A+ N ++R QQ + + EL NILL+GPTG Sbjct: 68 PKEIKKVLDEYVIGQEKAKRILSVAVYNHYKRLRAQQTHSKKNEVELAKSNILLIGPTGS 127 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ ++ Sbjct: 128 GKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKIL 170 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311 NT +ILFI GAF + AD Sbjct: 243 NTANILFICGGAFAGLEKIIRSRSEQGGIGFAADVKSKDDSRNVGEVLADVEAEDLIRYG 302 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L+++ ILT+ ++ L+ QY+ L + E L+ +D++ A+A Sbjct: 303 LIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIRDDALGAIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+T++E L D + Sbjct: 363 RKAMARKT-----GARGLRTILEHTLLDTMY 388 >gi|153820475|ref|ZP_01973142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae NCTC 8457] gi|126508982|gb|EAZ71576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae NCTC 8457] Length = 366 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 7 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 60 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 61 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 108 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 121 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 180 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 181 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 240 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 241 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 300 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 301 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 341 >gi|90407419|ref|ZP_01215603.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3] gi|90311450|gb|EAS39551.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3] Length = 429 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI + LD Y+IGQ AK+ +++A+ N ++R + D+ + EL NILL+GPTG G Sbjct: 70 TPHEIRANLDDYVIGQDQAKKVLSVAVYNHYKRLKY-GDVANGVELSKSNILLIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ +ARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 KTLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLL 170 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFIQV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFSGLDTIIEQRVDTGQGIGFGATVKDEDSKASLSEIFKKVEPQDLTKY 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ ILT ++ + QY L + E + L+F ++ + Sbjct: 303 GLIPEFIGRLPVVATLTELDEEALVEILTVPKNAITKQYSALFELEDVELEFRPKALKEM 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + +Q+ VV+D + ++ Sbjct: 363 AKKAMKRKT-----GARGLRSIVESVLLDTMYDLPSMQDVSKVVVDEKVIQ 408 >gi|61211447|sp|Q660R1|CLPX_BORGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 430 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D ++++I QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIIKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 397 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|289548352|ref|YP_003473340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermocrinis albus DSM 14484] gi|289181969|gb|ADC89213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermocrinis albus DSM 14484] Length = 412 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI AR SG ++R EGVQ+ LL ++EG+ + ++ Sbjct: 177 GIVYIDEIDKI-ARKSGINPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFI 235 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 ++T ILFI GAF H+ P DL+ Sbjct: 236 QVDTTDILFICGGAFVGLEDIIKRRLGKSTVGFEASIKKAHYEGNVLHLVEPDDLIHFGM 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + D IL + ++ L+ QY++L+ EG+ L FTE+++ +A Sbjct: 296 IPEFIGRLPVIAVLDELTEEDLVRILVEPKNALVKQYQKLLAMEGVELVFTEEALREIAA 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+ +ME ++ D+ F L+ K VV+D VR Sbjct: 356 EAIRRKT-----GARGLRAIMEEIMTDVMFEVPSLKGVKKVVVDGRTVR 399 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 4/104 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTG 63 +P +I LD+Y+IGQ+ AK+ +++A+ N ++R +++ DL D E+ NILL+GPTG Sbjct: 61 TPEKIKEILDQYVIGQEKAKKILSVAVYNHYKRIRAKEMGLDLNDVEVEKSNILLIGPTG 120 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++R LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 121 SGKTLLARTLAKILDVPFAIADATSLTEAGYVGEDVENVLTRLL 164 >gi|297561877|ref|YP_003680851.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846325|gb|ADH68345.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 428 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRDELMPKNILLVGPTGV 64 PREI LD Y+IGQ+ AK+A+++A+ N ++R + P + E+ NILL+GPTG Sbjct: 66 PREIYEFLDSYVIGQEQAKKALSVAVYNHYKRVRSEGDRPGEEDVEIAKSNILLLGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 GKTLLAQTLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH-------------------VSRPA---------------DLL---- 313 +T ++LFI GAF V RP DLL Sbjct: 241 DTTNVLFICGGAFAGLEKLIESRTGQQGMGFNAVLRPKGELGGSALFGEVMPEDLLKFGM 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + L++ ILT+ + L+ QY+ L + +G+ L+FT D+++A+A+ Sbjct: 301 IPEFVGRLPVITSVHDLDREALIRILTEPRNALVKQYQRLFELDGVELEFTPDALNAIAE 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E VL + + Sbjct: 361 QGI-----IRGTGARGLRAIIEEVLLSVMY 385 >gi|229817801|ref|ZP_04448083.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM 20098] gi|229785590|gb|EEP21704.1| hypothetical protein BIFANG_03077 [Bifidobacterium angulatum DSM 20098] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 19/121 (15%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPAD--------LRD- 49 P +I LDRY+IGQQ AKRA+++A+ N ++R Q PA LRD Sbjct: 65 PMQINDYLDRYVIGQQTAKRALSVAVYNHYKRVNMELREAASQVAPAGGEDAASDPLRDV 124 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++ NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ Sbjct: 125 QVAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQA 184 Query: 110 A 110 A Sbjct: 185 A 185 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 60/230 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS-------- 290 +GIV++DE DKI AR SG ++R EGVQ+ LL ++EG+ S GS Sbjct: 194 HGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPAEGSRKHREQET 252 Query: 291 --INTDHILFIASGAF----------------------HVSRPAD--------------- 311 INT ILFI GAF H D Sbjct: 253 IQINTRGILFICGGAFVGLTDIIKNRLGARESGFGAKWHDHEVPDGELLQQVCADDLAEF 312 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 LLPE GR PV L+ L + D +LT + L+ QY +L +G+ L FT+D++ A+ Sbjct: 313 GLLPEFIGRLPVVSVLQELKEDDLAAVLTQPSNALVKQYMKLFAVDGVTLTFTDDAVAAI 372 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A A+ + GAR L++++ER L+D F + V++D + V Sbjct: 373 ARTAIRQGT-----GARGLRSIIERTLQDTMFQLPSMNHVVEVIVDGDAV 417 >gi|260583669|ref|ZP_05851417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Granulicatella elegans ATCC 700633] gi|260158295|gb|EEW93363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Granulicatella elegans ATCC 700633] Length = 412 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ++AK+A+A+A+ N ++R L D EL NI L+GPTG GKT Sbjct: 62 PQEIREILNDYVIGQENAKKALAVAVYNHYKRINHLVEDDGVELQKSNICLIGPTGSGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LARL PF + T TE GYVG +VE I+ L+ Sbjct: 122 YLAQSLARLLNVPFAIADATTLTEAGYVGEDVENILLKLL 161 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 174 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQI 233 Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADL-----LP 314 +T ILFI GAF H S P DL +P Sbjct: 234 DTTDILFIVGGAFDGIETIVKERLGAKVIGFGSSNKNFSEHESLMQMIIPEDLQKFGLIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L + D ILT+ ++ L+ QY++L + + L+F+++++DA+A A Sbjct: 294 EFIGRLPIIAALEKLEQKDLVSILTEPKNALVKQYQKLFLMDEVELEFSQEALDAIAAKA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L++++E V+ D+ F E + VI Sbjct: 354 IERKT-----GARGLRSIIESVMMDLMFEIPSRDEVSKVI 388 >gi|170727452|ref|YP_001761478.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella woodyi ATCC 51908] gi|238688691|sp|B1KLT6|CLPX_SHEWM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169812799|gb|ACA87383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella woodyi ATCC 51908] Length = 426 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLK-NAGPKDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 62/232 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILF+ GAF H P DL Sbjct: 240 DTSKILFVCGGAFSGLEKVIEQRSHTGTGIGFGAQVKGEDDKATISDTLMQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+ + IL++ ++ L Q+ L + E + L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNALTKQFAALFEMEDVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A L + GAR L++++E +L DI + ++D K VVID V+ Sbjct: 360 A-----LKAKTRKTGARGLRSIVEGILLDIMYDLPSTDNVAK-VVIDESVVK 405 >gi|216264379|ref|ZP_03436371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 156a] gi|215980852|gb|EEC21659.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 156a] Length = 430 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|226321917|ref|ZP_03797443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi Bol26] gi|226233106|gb|EEH31859.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi Bol26] Length = 430 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|90410783|ref|ZP_01218798.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] gi|90328414|gb|EAS44712.1| ATP-dependent protease ATP-binding subunit [Photobacterium profundum 3TCK] Length = 426 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPQEIRTNLDDYVIGQNHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGADVRSKSEERTISDLFKKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ E + L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDQDALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A A++ + GAR L++++E VL D + S + VVID Sbjct: 361 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSAVGVSKVVID 401 >gi|146282419|ref|YP_001172572.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas stutzeri A1501] gi|145570624|gb|ABP79730.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas stutzeri A1501] Length = 441 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P+EI LD+Y+IGQ+ AK+ +A+A+ N ++R Q EL NILL+GPTG GK Sbjct: 82 APKEISGILDQYVIGQERAKKILAVAVYNHYKRLNQRDKKEEVELGKSNILLIGPTGSGK 141 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 142 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 182 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 195 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 254 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 255 DTRNILFICGGAFAGLEKVIQSRSTQGGIGFNAEVRSKDPGKKIGEALRAVEPDDLVKFG 314 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ A+A Sbjct: 315 LIPEFVGRLPVIATLDELDEAALIQILTEPKNALTKQYAKLFELEGVDLEFRPDALKAVA 374 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E VL D + ++ VVID Sbjct: 375 HRALERKT-----GARGLRSILEGVLLDTMYEIPSQKDVSKVVID 414 >gi|327183368|gb|AEA31815.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus amylovorus GRL 1118] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L LN D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|291515534|emb|CBK64744.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Alistipes shahii WAL 8301] Length = 422 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 55/229 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ V+ K+ + Sbjct: 187 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPEQKFIQV 246 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF P DL +P Sbjct: 247 DTRNILFICGGAFDGIEKKIAQRLNTRAMGYGRLNADPIDRSNLMQYVTPQDLKSFGLIP 306 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV +++ L ++ R ILT+ ++ ++ QYK L + +G+ L F +D++D + D A Sbjct: 307 ELVGRLPVLTYMQPLERAALRSILTEPKNAIVKQYKRLFELDGVKLAFDDDALDYIVDKA 366 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 V +GAR L+++ E ++ D F + + Y + I Sbjct: 367 VEFK-----LGARGLRSICEAIMMDTMFDIPSTDARKFTVTLPYAKKKI 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 1/120 (0%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 +K+ P +I LD+Y+IGQ AKR +++A+ N ++R P + E+ NI+LV Sbjct: 67 LKMEELLKPAQIKEFLDQYVIGQDAAKRYMSVAVYNHYKRLLYAPKEDEVEIDKSNIVLV 126 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++R +A+L PF V+ T TE GYVG +VE I+ L+ VA V ++ R Sbjct: 127 GPTGTGKTLMARTIAKLLKVPFTIVDATVLTEAGYVGEDVESILSRLLQVADYNVEQAER 186 >gi|220927144|ref|YP_002502446.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium nodulans ORS 2060] gi|254763854|sp|B8IN27|CLPX_METNO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219951751|gb|ACL62143.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium nodulans ORS 2060] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 65 TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLERIISARGKGTSIGFGATVQAPDDRRTGEIFRNVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + IL + ++ L+ QY+ L + E + L F E+++ +A Sbjct: 298 IPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + + L + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVV 400 >gi|119510657|ref|ZP_01629786.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena CCY9414] gi|119464708|gb|EAW45616.1| ATP-dependent protease ATP-binding subunit [Nodularia spumigena CCY9414] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 9/126 (7%) Query: 3 LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMP 53 L+FN PREI + LD ++IGQ +AK+ +++A+ N ++R + AD EL Sbjct: 74 LSFNQIPKPREIKNYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGKNEADDAVELQK 133 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 NILL+GPTG GKT +++ LA + PF + T TE GYVG +VE I+ L+ VA Sbjct: 134 SNILLIGPTGCGKTLLAQTLATILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLD 193 Query: 114 VRESRR 119 V E++R Sbjct: 194 VEEAQR 199 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 200 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 259 Query: 292 NTDHILFIASGAF----------------HVSRPADL----------------------- 312 +T +ILF+ GAF +P DL Sbjct: 260 DTSNILFVCGGAFVGLDKVVDQRSGKKSMGFVQPGDLQSKEKRTADTLRYLEPDDLVKFG 319 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ + L++ ILT S L+ QY++L+ + + LDF +D++ A+A Sbjct: 320 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLNMDNVQLDFKQDALRAIA 379 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 380 QEAYRRKT-----GARALRGIVEELMLDVMY 405 >gi|121593622|ref|YP_985518.1| ATP-dependent protease ATP-binding subunit ClpX [Acidovorax sp. JS42] gi|222110342|ref|YP_002552606.1| ATP-dependent protease ATP-binding subunit clpx [Acidovorax ebreus TPSY] gi|166214752|sp|A1W5B7|CLPX_ACISJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763845|sp|B9MG15|CLPX_ACIET RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120605702|gb|ABM41442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax sp. JS42] gi|221729786|gb|ACM32606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidovorax ebreus TPSY] Length = 421 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ+ AKR +A+A+ N ++R + EL NILL+GPTG Sbjct: 67 TPAEIKTNLDHYVIGQEKAKRTLAVAVYNHYKRLRHKDKAGKDEVELSKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR PF+ + T TE GYVG +VE I++ L+ Sbjct: 127 GKTLLAQTLARQLDVPFVMADATTLTEAGYVGEDVENIVQKLL 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 59/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 242 DTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVRSKKQRSLTEVFQDIEPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY +L+ EG+ L+ ++ ++A Sbjct: 302 IPELVGRMPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKSIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 A+ + GAR L++++E+ L F ++ EK VV +A Sbjct: 362 KAIARKT-----GARGLRSILEQALIGTMFDLPNVSNVEKVVVDEA 402 >gi|254785701|ref|YP_003073130.1| ATP-dependent protease ATP-binding subunit ClpX [Teredinibacter turnerae T7901] gi|237686761|gb|ACR14025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Teredinibacter turnerae T7901] Length = 431 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 7/118 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRW------RRQQLP-ADLRDELMPKNILLVG 60 +P I LD Y+IGQ+ AK +AIA+ N + RR+ L +D EL N+L+VG Sbjct: 60 TPEAIKKHLDDYVIGQEQAKETLAIAVYNHYLRLMNTRRETLEESDSNIELDKSNVLMVG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 P+G GKT I R LA++ G PF+ + T T+ GYVG +V+ II L+D A V +++ Sbjct: 120 PSGTGKTLIVRSLAKILGVPFVSADATSLTQAGYVGDDVDSIIHRLLDAAEGDVNQAQ 177 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 57/218 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVS-TKYGS--------- 290 +GIV++DE DKI R G VS EGVQ+ LL LVEG+ +K G Sbjct: 177 QWGIVYIDEIDKIARRGGGTTSVRDVSGEGVQQALLKLVEGTEQKVSKSGRRRENSEEVI 236 Query: 291 INTDHILFIASGAF--------HVSRPAD------------------------------- 311 ++T +ILFI GAF + +P D Sbjct: 237 VDTRNILFIVGGAFPGLEELICNRVKPRDTSIGFHSRTENAKPDVNELLENLLPDDLQGF 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GRFP+ L+ L+ ILT+ + L+ Q+++L +G L+ T+D++ + Sbjct: 297 GLIPEFIGRFPITTFLQELDVEALLKILTEPRNALVKQFRQLFAYQGKTLEMTDDALTFI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ AV+ N+ GAR L++V+E L F LQ Sbjct: 357 AEEAVSRNT-----GARGLRSVLEAALHKTMFEMPSLQ 389 >gi|228987724|ref|ZP_04147835.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771998|gb|EEM20453.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404 >gi|149181756|ref|ZP_01860247.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1] gi|148850497|gb|EDL64656.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. SG-1] Length = 424 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ+ AK+++A+A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PKEIREILDEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 64/240 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF V R P DLL Sbjct: 236 DTSNILFICGGAFDGIEQIVKRRLGQKVIGFGSDPKTVNVDNDKSLLAKVVPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY+++++ + + L+F ED++ +A+ Sbjct: 296 IPEFIGRLPVISSLTPLDEDALVEILTKPKNALVKQYQKMLELDQVELEFEEDALREIAN 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ ++ F S D+++ + V D+E +L + D Sbjct: 356 KAIERKT-----GARGLRSIIESIMLEVMFDLPSREDIKKCIITPGTVTDSEAPKLLLED 410 >gi|170744619|ref|YP_001773274.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium sp. 4-46] gi|238688059|sp|B0UD19|CLPX_METS4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|168198893|gb|ACA20840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium sp. 4-46] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R A D EL NILL+GPTG GK Sbjct: 65 TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHAAKHNDVELAKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTTNILFICGGAFAGLERIISARGKGTSIGFGATVQAPDDRRTGEIFRAVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ + IL + ++ L+ QY+ L + E + L F E+++ +A Sbjct: 298 IPEFVGRLPVLATLEDLDETALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L + + L + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILESILLETMYDLPGLDSVEQVVIGPEVV 400 >gi|15594957|ref|NP_212746.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia burgdorferi B31] gi|195941432|ref|ZP_03086814.1| ATP-dependent protease ATP-binding subunit [Borrelia burgdorferi 80a] gi|218249658|ref|YP_002375117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi ZS7] gi|221218047|ref|ZP_03589513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 72a] gi|223889057|ref|ZP_03623647.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 64b] gi|224533641|ref|ZP_03674230.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi CA-11.2a] gi|225549555|ref|ZP_03770521.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 118a] gi|6225164|sp|O51557|CLPX_BORBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2688531|gb|AAC66963.1| ATP-dependent Clp protease, subunit X (clpX) [Borrelia burgdorferi B31] gi|218164846|gb|ACK74907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi ZS7] gi|221191995|gb|EEE18216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 72a] gi|223885483|gb|EEF56583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 64b] gi|224513314|gb|EEF83676.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi CA-11.2a] gi|225369832|gb|EEG99279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 118a] gi|312148054|gb|ADQ30713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi JD1] Length = 430 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|326795824|ref|YP_004313644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas mediterranea MMB-1] gi|326546588|gb|ADZ91808.1| ATP-dependent Clp protease ATP-binding subunit clpX [Marinomonas mediterranea MMB-1] Length = 427 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P ++ LD Y+IGQ+ AK+ +A+A+ N ++R Q D EL NILL+GPTG G Sbjct: 70 TPLKLSKSLDDYVIGQERAKKVLAVAVYNHYKRLRHQSSKDSPVELGKSNILLIGPTGSG 129 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 130 KTLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLLQNCDYDVEKAQR 183 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H DL Sbjct: 244 DTSNILFICGGAFAGLERVISDRTEKSSIGFSATVKSKDEGRTFSEAIHQVETEDLVKFG 303 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ IL++ ++ L QY+ L EG+ L+FT++S+ A Sbjct: 304 LIPEFVGRLPVVATLSELDEEALMTILSEPKNALTKQYQHLFDLEGVELEFTDESLREAA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +A+ + GAR L++++E L D + + + +V+D VR Sbjct: 364 HLALERKT-----GARGLRSILESALLDCMYELPNRSDVVKIVMDGASVR 408 >gi|187918472|ref|YP_001884035.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia hermsii DAH] gi|119861320|gb|AAX17115.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Borrelia hermsii DAH] Length = 433 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ S LD+YIIGQ+DAK+ +++A+ N ++R + + EL N+LLVGPTG G Sbjct: 68 TPKQLKSHLDKYIIGQEDAKKVLSVAVYNHYKRIFRGNKKESGVELEKSNVLLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++++LA PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLLAKKLADEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G I Sbjct: 182 GIVYIDEIDKIAKKGENVSITRDVSGEGVQQSLLKIIEGTIANIPPKGGRKHPYEETIEI 241 Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314 NT ILFI GAF SR + L+P Sbjct: 242 NTQDILFICGGAFVGLENIIKRRINKSSIGFSSVGKQDSRENNSLKYLEMEDLVKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ L K D IL + E++++ QY + K + + L F D+++A+A+ A Sbjct: 302 EFVGRLPVHSYLEKLEKEDLIKILIEPENSIVKQYYHMFKMDNVELVFERDALNAIAEEA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F S Q K V++ E V Sbjct: 362 MLKNT-----GARGLRSILEELLKDVMFEIPSTKQIKKVIVTKESV 402 >gi|325286840|ref|YP_004262630.1| Sigma 54 interacting domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322294|gb|ADY29759.1| Sigma 54 interacting domain protein [Cellulophaga lytica DSM 7489] Length = 411 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAFH-VSR--------------------------------PADL-----L 313 NT++ILFIA GAF + R P DL + Sbjct: 235 NTENILFIAGGAFDGIERIITKRLNMQAVGYSASKLDDNVDNTNILQYIIPKDLKEFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L++ R ILT+ ++ +I QY++L + I T+ ++D + Sbjct: 295 PEIIGRLPVLTHMNPLDEKTLRAILTEPKNAIIKQYEKLFAMDDIKFSITDKALDFVVSK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E + D F Q+K + EY Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFELPSSQDKEFKVTQEY 394 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD +IIGQ+ K+ +++A+ N ++R P+ D E+ NI++ G TG GK Sbjct: 62 PMEIKAFLDTFIIGQERTKKVMSVAVYNHYKRLLQPSSADDDVEIQKSNIVMAGQTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A++ P V+ T TE GYVG +VE ++ L+ A Sbjct: 122 TLMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVESLLTRLLQAA 165 >gi|315038089|ref|YP_004031657.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus amylovorus GRL 1112] gi|325956542|ref|YP_004291954.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus acidophilus 30SC] gi|312276222|gb|ADQ58862.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus amylovorus GRL 1112] gi|325333107|gb|ADZ07015.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus acidophilus 30SC] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEADKVDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L LN D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLNSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|297538720|ref|YP_003674489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera sp. 301] gi|297258067|gb|ADI29912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera sp. 301] Length = 426 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 8/119 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P+EI LD+Y+IGQ AK+ +A+A+ N ++R +L D E+ NILL+G Sbjct: 65 TPQEICKILDQYVIGQTHAKKNLAVAVYNHYKRLG-HNNLSDGGQKDEVEISKSNILLIG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LARL PF+ + T TE GYVG +VE I++ L+ V +++R Sbjct: 124 PTGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLLQKCDYDVEKAKR 182 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 110/238 (46%), Gaps = 62/238 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEVDKISRKSENASITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQL 242 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADLL--- 313 +T +ILFI GAF V R P DL+ Sbjct: 243 DTTNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKGKNDIRQVGAVLRDVEPEDLIKFG 302 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+SL+++ ILT+ ++ L QY +L K EG+ L+F E ++ +A Sbjct: 303 LIPEFIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVELEFRESALLLIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428 A+ + GAR L++++E L DI + L+ VV+D VR GD P+ Sbjct: 363 KKALERKT-----GARGLRSILEHSLLDIMYELPSLENLSKVVVDEGVVR---GDAPA 412 >gi|254448887|ref|ZP_05062343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium HTCC5015] gi|198261577|gb|EDY85866.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium HTCC5015] Length = 426 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 5/115 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI LD Y+IGQ+ AK+ +++A+ N ++R + + R+ EL NILL+GPTG Sbjct: 67 TPHEIKQRLDDYVIGQERAKKVLSVAVYNHYKR--MESSQRNDEIELSKSNILLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DK+ + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H P DL Sbjct: 240 DTSNILFICGGAFAGLDKVIRERSEKGGIGFAAEVKTEEDDLAIGQLLHEVEPEDLVKYG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L + ILT ++ +I Q+K L + EG+ ++F + ++ A+A Sbjct: 300 LIPEFIGRLPVVATLEELGEEALIEILTQPKNAIIKQFKYLFEMEGVEIEFLDAALSAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+T++E +L D + ++ VVID +R Sbjct: 360 QKAMERKT-----GARGLRTILENILLDTMYEVPSMESVSKVVIDDAVIR 404 >gi|161507349|ref|YP_001577303.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus helveticus DPC 4571] gi|172048267|sp|A8YUS4|CLPX_LACH4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160348338|gb|ABX27012.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571] Length = 424 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PMEIKKQLDQYVIGQNRAKKVLSVAVYNHYKRISQMDFDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L +L+ D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDNLSSEDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|46577697|sp|P70730|CLPX_AZOBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|5002358|gb|AAD37436.1|AF150957_3 heat-shock protein ClpX [Azospirillum brasilense] Length = 422 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I + LD Y+IGQ AKR +++A+ N ++R D EL NILLVGPTG GK Sbjct: 65 TPRDIHAVLDDYVIGQHHAKRVLSVAVHNHYKRLAHGTKHNDVELAKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYV +VE II L+ A Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVREDVENIILKLLQAA 168 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 238 DTSNILFICGGAFAGLDKIIAQRGKGTSIGFGADVRGPDERSTGDILREVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+++ ILT ++ L+ QY+ L + E + L+F++D++ ++ Sbjct: 298 IPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTISH 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L ++++++ E V Sbjct: 358 KAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 400 >gi|298292193|ref|YP_003694132.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Starkeya novella DSM 506] gi|296928704|gb|ADH89513.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Starkeya novella DSM 506] Length = 423 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI LD Y+IGQ AKR +++A+ N ++R + D+ EL NILL+GPTG Sbjct: 65 TPKEICKVLDDYVIGQFHAKRVLSVAVHNHYKRLNHATKHAGDV--ELAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 123 SGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQR 178 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V+ P D L Sbjct: 239 DTSNILFICGGAFAGLDKIISSRGKGTSIGFSAVVAAPEDRKPGEVFREVEPEDLLKYGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ + IL + ++ L+ QY+ L + E + L E+++ A+A Sbjct: 299 IPEFIGRLPVIATLGDLDEEALKKILAEPKNALVKQYQRLFEMENVELTIHEEALGAIAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L+ + VVI E V Sbjct: 359 KAIERKT-----GARGLRSIMEGILLDTMFDLPGLEGVEEVVISKEVV 401 >gi|302534404|ref|ZP_07286746.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. C] gi|302443299|gb|EFL15115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. C] Length = 428 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VVI A+ VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408 >gi|148977889|ref|ZP_01814442.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] gi|145962835|gb|EDK28107.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] Length = 426 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVETGSGIGFGAEVRSKDETKTIGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A++ + GAR L++++E VL + + S++D+ + VVID Sbjct: 361 AKKAMSRKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401 >gi|329889320|ref|ZP_08267663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas diminuta ATCC 11568] gi|328844621|gb|EGF94185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas diminuta ATCC 11568] Length = 422 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 238 DTANILFIVGGAFAGLEKVISARGEGASIGFGAKVKEIDERRTGEILKQVEPDDLMRFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QYK L + E + L FT+D++ A+A Sbjct: 298 IPEFIGRLPVLATLEDLDEVALIKILTEPKNALVKQYKRLFEMENVTLTFTDDALSAVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E VL + F Sbjct: 358 KAITRKT-----GARGLRSILEGVLLETMF 382 >gi|229158089|ref|ZP_04286159.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus ATCC 4342] gi|228625408|gb|EEK82165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus ATCC 4342] Length = 444 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMF 404 >gi|317492908|ref|ZP_07951332.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919030|gb|EFV40365.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 423 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGTGIGFGATVKALSEKATEGELLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLRELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L + + ++ EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSMENVEKVVV 398 >gi|254382768|ref|ZP_04998125.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1] gi|194341670|gb|EDX22636.1| ATP-dependent protease ATP-binding subunit [Streptomyces sp. Mg1] Length = 428 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFAATIRSKREIEASNQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VVI A+ VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408 >gi|163791244|ref|ZP_02185660.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7] gi|159873514|gb|EDP67602.1| ATP-dependent protease ATP-binding subunit [Carnobacterium sp. AT7] Length = 415 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P+EI L+ Y+IGQ+ AK+++++A+ N ++R Q+ D +D EL NI L+GPTG G Sbjct: 64 PQEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQIGGDEKDGVELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAA 168 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 178 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 237 Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314 +T +ILFI GAF P DLL P Sbjct: 238 DTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKIEEGQSVMQQIIPEDLLKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L + D ILT ++ L QYK+L+ + + L+F EDS+ +A A Sbjct: 298 EFIGRLPVMAALEKLTEDDLVHILTKPKNALAKQYKKLLGLDDVELEFEEDSLTEIAKKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + N+ GAR L++++E ++ +I F Sbjct: 358 IERNT-----GARGLRSIIESIMLEIMF 380 >gi|86148884|ref|ZP_01067135.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218710173|ref|YP_002417794.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio splendidus LGP32] gi|254763873|sp|B7VHZ9|CLPX_VIBSL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|85833327|gb|EAQ51534.1| ATP-dependent protease ATP-binding subunit [Vibrio sp. MED222] gi|218323192|emb|CAV19369.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio splendidus LGP32] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 101/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVETGSGIGFGAEVRSKDETKTIGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+N + GAR L++++E VL + + S++D+ + VVID Sbjct: 361 AKKAMNRKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401 >gi|307942063|ref|ZP_07657414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp. TrichSKD4] gi|307774349|gb|EFO33559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseibium sp. TrichSKD4] Length = 431 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILL GPTG GK Sbjct: 75 TPQEIRDVLDDYVIGQGSAKKVLSVAVHNHYKRLNHSSKNNDVELAKSNILLAGPTGCGK 134 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 135 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 187 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 188 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 247 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF V P DLL Sbjct: 248 DTTNILFICGGAFAGLDKIIADRGTQTSIGFKANVQAPEDRRVGELFSVMEPEDLLKFGL 307 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL + ++ L+ QY+ L + E + L F E+++ A+A Sbjct: 308 IPEFVGRLPVIATLEDLDEDALVTILVEPKNALVKQYQRLFEMEQVELTFHEEALRAIAR 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D + L+ K VVI E V Sbjct: 368 KAIERKT-----GARGLRSILEAILLDTMYELPGLKGVKEVVISPEVV 410 >gi|301060526|ref|ZP_07201366.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] gi|300445369|gb|EFK09294.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] Length = 415 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI LD+Y+I Q AK+ +++A+ N ++R D+ E+ NILL+GPTG G Sbjct: 62 LKPVEIKETLDQYVIEQDKAKKVLSVAVHNHYKRINTKVDMEGVEIEKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II +LV +A Sbjct: 122 KTLLAQTLARILKVPFTIADATTLTEAGYVGEDVENIILNLVQMA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 176 GIVYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTLANVPPKGGRKHPQQDFVKV 235 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI G F+ + +P DL+ Sbjct: 236 DTSNILFICGGTFNGLDRIIRSRIGSKLMGFEADIHGKGDVDINEIMGLVQPEDLIKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ ILT+ ++ L QYK+L + E + L FT+ ++A+A+ Sbjct: 296 IPEFIGRIPIVATLNELSLEALVRILTEPKNALTKQYKKLFELEDVELKFTDGVLNAVAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ S GAR L+ ++E ++ +I + + E + VI+ E V Sbjct: 356 AALKRKS-----GARGLRAILETLMLEIMYDIPSIPEIRECVINEEVV 398 >gi|319788748|ref|YP_004090063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 7] gi|315450615|gb|ADU24177.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 7] Length = 423 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 2/111 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ DAK A+++A+ N ++R D D E+ N+LL+GPTG GK Sbjct: 73 PSEIKAVLDEYVIGQDDAKIALSVAVYNHYKRILTLEDDTDDVEIQKSNVLLLGPTGTGK 132 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LARL PF + T TE GYVG +VE ++ L+ A V E+ Sbjct: 133 TLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEA 183 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 56/229 (24%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG--------- 289 ++GI+++DE DKI + I VS EGVQ+ LL +VEG S+V + G Sbjct: 184 SHGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFI 243 Query: 290 SINTDHILFIASGAFHVSR--------------------------------PADLL---- 313 I+T +ILFI GAF P DL+ Sbjct: 244 QIDTKNILFICGGAFDGLEAVIKKRTDSSSMGFGGKVKDKTSDYNILKKVVPHDLVKFGI 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ +++LI QY +L + + I + T +++ +A Sbjct: 304 VPELVGRLPVITVLDELDEPALCRILTEPKNSLIKQYTKLFELDNIEFEVTPEALTEIAK 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 V + + GAR L+ V+ER+L + F A SD + I AE V+ Sbjct: 364 VTIEQKT-----GARGLRAVVERILTQLMFDAPSDDTISGIRITAECVK 407 >gi|218262312|ref|ZP_03476826.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii DSM 18315] gi|218223463|gb|EEC96113.1| hypothetical protein PRABACTJOHN_02500 [Parabacteroides johnsonii DSM 18315] Length = 409 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 233 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 234 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYAANENTAKVDRSNLLKYITPTDLKSFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++S R ILT+ ++++I QY +L + I L F ED + + D Sbjct: 294 PEIIGRLPILTYLNPLDRSTLRNILTEPKNSIIKQYIKLFAMDDIKLTFDEDVFEFIVDK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S +K + + EY + Sbjct: 354 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSANKKKLHVTLEYAK 395 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++A+ N ++R Q++ +D E+ NI++VG TG GK Sbjct: 62 PEDIKAFLDQYVIGQDDAKRYLSVAVYNHYKRLIQKVTSD-DVEIEKSNIIMVGATGTGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 121 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 173 >gi|153813885|ref|ZP_01966553.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756] gi|145848281|gb|EDK25199.1| hypothetical protein RUMTOR_00091 [Ruminococcus torques ATCC 27756] Length = 431 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 13/153 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+A+A+A+ N ++R + +D D E+ N+L++GPTG G Sbjct: 76 APHKIKARLDEYVVGQEKAKKAMAVAVYNHYKR--VASDTMDDIEIEKSNMLMIGPTGSG 133 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V E EQ Sbjct: 134 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQ 187 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TSN R+V + ++ G Sbjct: 188 GIIFIDE--IDK-IAKKHTSNQRDVSGESVQQG 217 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++NT Sbjct: 188 GIIFIDEIDKIAKKHTSNQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 247 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 +ILFI +GAF V+ R ++P Sbjct: 248 KNILFICAGAFPDLEDIIKERLTKKTSMGFNAELKDKYEHDEDILSKVTVEDLRKFGMIP 307 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + + ++ QY++L+ + + L F + +++ +A+ A Sbjct: 308 EFLGRMPIIFTLKGLDKDMLVKILKEPRNAILKQYQKLLALDEVSLVFDDGALETIAEKA 367 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 368 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITREYI 408 >gi|313884248|ref|ZP_07818014.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus coleocola ACS-139-V-Col8] gi|312620695|gb|EFR32118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eremococcus coleocola ACS-139-V-Col8] Length = 415 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62 P EI++ LD+Y++GQ+ AK+ +++A+ N ++R D ++E L NI L+GPT Sbjct: 61 LKPNEIMTILDQYVVGQKQAKKNLSVAVYNHYKRIMHNQDKQEEDEVDLQKSNIALIGPT 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE ++ LV A Sbjct: 121 GSGKTYLAQTLARILNVPFAIADATTLTEAGYVGEDVENVLLKLVQAA 168 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ + K G + Sbjct: 178 GIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKILEGTTANIPPKGGRKHPNQDFIQM 237 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T ILFI GAF + P DLL P Sbjct: 238 DTSQILFIVGGAFDGIETIIKERLGSKVIGFGVSNGKFDESKSLIQHATPEDLLKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT ++ L+ QY++L + + L+F ED++ A+A +A Sbjct: 298 EFIGRIPIMAVLDKLTEDDLVEILTKPKNALVKQYQKLFDIDHVKLEFKEDALRAIAHLA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E V+ D+ F Sbjct: 358 IERGT-----GARGLRSIIESVMLDVMF 380 >gi|302337809|ref|YP_003803015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta smaragdinae DSM 11293] gi|301634994|gb|ADK80421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Spirochaeta smaragdinae DSM 11293] Length = 413 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD Y++GQ+ AK+ +++A+ N ++R + D E+ N+LL+GPTG G Sbjct: 62 TPQEIHTYLDEYVVGQETAKKVLSVAVYNHYKRIAQRGKIEDDIEIEKANVLLLGPTGTG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR PF + T TE GYVG +VE I+ L+ A N + + R Sbjct: 122 KTLLAKTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQAAGNNIAAAER 175 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 58/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKISRKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIRI 235 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF V++ P DL Sbjct: 236 DTTNILFIVGGAFVGLDRIIEQRVAQHPLGFGADVMASSEKDLSALYSKLHPDDLVKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ V L L+K + I+++ +++++ QY+ +K + + L F +++A+A+ Sbjct: 296 IPEFIGRLPIHVALSDLSKEELMRIVSEPKNSILRQYQASLKLDEVNLVFQPGAVEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVI 414 A+ + GAR L+ ++E V+ DI + ++ K VV+ Sbjct: 356 KALEQKT-----GARGLRAIVENVMLDIMYEIPSIEGAKQVVV 393 >gi|253575672|ref|ZP_04853008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. oral taxon 786 str. D14] gi|251845010|gb|EES73022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. oral taxon 786 str. D14] Length = 418 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+++++A+ N ++R + D EL NILL+GPTG GKT Sbjct: 64 PKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNAANDGQKELKPGEYLSMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL++ ++ L+ QY++L++ + + L F +++A+A Sbjct: 296 IPEFVGRLPVISTLEPLDEKTLVRILSEPKNALVKQYQKLLELDNVNLQFEPKALEAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E ++ D+ + + T + E V L Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLDVMYEVPSRDDITDCVITEKVVLE 400 >gi|193213134|ref|YP_001999087.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobaculum parvum NCIB 8327] gi|238692649|sp|B3QPN4|CLPX_CHLP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|193086611|gb|ACF11887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobaculum parvum NCIB 8327] Length = 439 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EGS V K G Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 255 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 256 NINTKNILFICGGAFEGLDKIIARRVSKSSMGFGSKVKDKQTGYDPEILKLVTQDDLHEY 315 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+ S R IL + ++ L+ QYK L + +G+ L+FT++++D + Sbjct: 316 GLIPEFIGRLPVMSALDPLDASALRNILVEPKNALVKQYKRLFEMDGVELEFTDEALDKV 375 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 ++A+ + GAR L++V+E V+ DI F L++ + +I +E + Sbjct: 376 VEIAIERGT-----GARALRSVLENVMIDIMFELPTLKDVQKCIITSETI 420 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 SP I LD+Y+IGQ+ AK+++++A+ N ++R + A+ E+ NILL+GPTG Sbjct: 83 SPVNIKESLDQYVIGQERAKKSLSVAVYNHYKRIDAHEWTAEDEVEIEKSNILLIGPTGT 142 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA L PF + T TE GYVG +VE I+ L+ + N+ R R Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAER 197 >gi|331082572|ref|ZP_08331697.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 6_1_63FAA] gi|330400550|gb|EGG80180.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lachnospiraceae bacterium 6_1_63FAA] Length = 436 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y+IGQ +AK+ +++A+ N ++R + EL NIL++GPTG GK Sbjct: 65 LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 168 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 57/213 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ S ++ Sbjct: 177 YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQ 236 Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312 I+T +ILFI GAF +V P DL Sbjct: 237 IDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKFG 296 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L +L+K+ ILT+ +++L+ QY+ L +GI L+F ++++A+A Sbjct: 297 LIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 D ++ + GAR L+ +ME + D+ ++A Sbjct: 357 DKSMERKT-----GARGLRAIMENSMMDLMYTA 384 >gi|269792563|ref|YP_003317467.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100198|gb|ACZ19185.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermanaerovibrio acidaminovorans DSM 6589] Length = 429 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P E+ + LD+Y+IGQ AK+ +++A+ N +RR P+D + EL N+LLVGPTG GKT Sbjct: 76 PDEMKAFLDQYVIGQDQAKKVLSVAVYNHYRRITAGPSDDQVELPKSNVLLVGPTGSGKT 135 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LARL PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 136 LLAQTLARLLKVPFAIADATTLTEAGYVGEDVENILVRLLQAADYDVKAAER 187 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S+V K G + Sbjct: 188 GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLRILEGTVSNVPPKGGRKHPNQDFIQV 247 Query: 292 NTDHILFIASGAFHVSRP----------------------------------AD------ 311 +T +ILFI GAF P AD Sbjct: 248 DTKNILFICGGAFDGLEPIIARRTRKKVIGFGGDIASAKDLEKRNSLYRELVADDFITYG 307 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L SL++ IL + ++ L+ QY+ + + + + L+FT ++I A+A Sbjct: 308 FIPEFVGRLPVIVPLDSLDEEALVRILQEPKNALVRQYQRIFEMDRVNLEFTPEAIRAIA 367 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ME ++ D+ + Sbjct: 368 RKAMERKT-----GARALRSIMEGIMLDLMY 393 >gi|302382858|ref|YP_003818681.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brevundimonas subvibrioides ATCC 15264] gi|302193486|gb|ADL01058.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas subvibrioides ATCC 15264] Length = 420 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIREVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312 +T +ILFI GAF +R A L Sbjct: 238 DTANILFIVGGAFAGLEKVIAARGAGASIGFGAKVKEVDERRTGDILKGVEPDDLMRFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ ILT+ ++ L+ QYK L + E + L FT+D+++A+A Sbjct: 298 IPEFIGRLPVLATLEDLDEKALVTILTEPKNALVKQYKRLFEMENVGLTFTDDALNAVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L + F Sbjct: 358 KAITRKT-----GARGLRSILEGILLETMF 382 >gi|296129242|ref|YP_003636492.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas flavigena DSM 20109] gi|296021057|gb|ADG74293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellulomonas flavigena DSM 20109] Length = 425 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPADLRD-ELMPKNILLVGP 61 P+EI L++YI+GQ+ AKR++A+A+ N ++R Q +PA E+ NILL+GP Sbjct: 64 PKEIFDFLEQYIVGQEPAKRSLAVAVYNHYKRIQAGEGARVPAGEEPVEIAKSNILLIGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR-------------------------PADLL-----PE 315 +T ++LFI +GAF SR P DLL PE Sbjct: 242 DTTNVLFIVAGAFAGLDEIITSRAGRRGIGFGSPLHSADDTDVYGEVMPEDLLKFGLIPE 301 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR P+ + L++ ILT+ + LI QY+ + + +G+ L+F E +++A+A+ A+ Sbjct: 302 FIGRVPIITTVSPLDRVALVRILTEPRNALIKQYQRMFQIDGVELEFEEAAVEAVAEQAL 361 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 L T GAR L+ ++E VL+ + F Sbjct: 362 -LRGT----GARGLRAILEEVLQQVMF 383 >gi|254462093|ref|ZP_05075509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacterales bacterium HTCC2083] gi|206678682|gb|EDZ43169.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodobacteraceae bacterium HTCC2083] Length = 377 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P++I LD Y+IGQ AKR +++A+ N ++R + EL NILL+GPTG GK Sbjct: 21 TPKDICQVLDDYVIGQATAKRVLSVAVHNHYKRLNHAQKNSEIELAKSNILLMGPTGCGK 80 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR PF + T TE GYVG +VE II L+ + V +++R Sbjct: 81 TLLAQTLARTLDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVEKAQR 133 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 134 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 193 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 194 DTTNILFICGGAFAGLDKIIAARGKGSAMGFGADVRDNDDRGIGEIFTELEPEDLLRFGL 253 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FTED++ A+A Sbjct: 254 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELESTQLTFTEDALSAIAK 313 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F + T VV++ E V Sbjct: 314 RAIERKT-----GARGLRSILEEILLDTMFDLPGMDTVTEVVVNDEAV 356 >gi|84387736|ref|ZP_00990752.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] gi|84377419|gb|EAP94286.1| ATP-dependent protease ATP-binding subunit [Vibrio splendidus 12B01] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPREIREHLDDYVIGQEYAKKVLAVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFSGLDKVIEQRVEKGSSIGFGAEVRSKDEAKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALVQILCEPKNALTKQYAALFEIEETELEFRDDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + S++D+ + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSSTDVSK--VVID 401 >gi|189502524|ref|YP_001958241.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Amoebophilus asiaticus 5a2] gi|189497965|gb|ACE06512.1| hypothetical protein Aasi_1179 [Candidatus Amoebophilus asiaticus 5a2] Length = 403 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ V+ K + Sbjct: 170 GIVYIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTIVNVPPQGGRKHPDQKMIPV 229 Query: 292 NTDHILFIASGAF------------------------------------HVS----RPAD 311 NT++ILFI GAF HVS R Sbjct: 230 NTENILFICGGAFEGMDKIISKRLNAGTLGFDIAQSRSQGTRETSNLLKHVSSNDLRVYG 289 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ +L ++ + ILT+ +++LI QY +L + + L TED++D + Sbjct: 290 LIPELIGRLPIISYLNPIDAKALKSILTEPKNSLIKQYTKLFAMDNVQLTITEDALDYMV 349 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV-VIDAEY 418 + A++L +GAR L+++ E V+ D F S +E V +ID Y Sbjct: 350 EQALSLK-----LGARGLRSICEAVIMDAMFELSSEKEAAVLLIDKNY 392 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGV 64 +P+EI + LD+Y+IGQ AK+ +A+A+ N ++R + + D + NILL+G TG Sbjct: 55 LTPKEIKAYLDQYVIGQDVAKKTLAVAVYNHYKRLRQSYEEEDGITIEKSNILLLGETGT 114 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 115 GKTYLARTLAKLLHVPFCMADATVLTEAGYVGEDVESILTRLLQAA 160 >gi|47566662|ref|ZP_00237484.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus G9241] gi|47556692|gb|EAL15024.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus G9241] Length = 419 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379 >gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC586] gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. RC586] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401 >gi|320102131|ref|YP_004177722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera pallida ATCC 43644] gi|319749413|gb|ADV61173.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Isosphaera pallida ATCC 43644] Length = 478 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 6/107 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +PREI ++LD+Y+IGQ AK+ +++A+ N ++R ++ D+ EL NILL+GPTG Sbjct: 88 NPREIKAQLDQYVIGQDRAKKVLSVAVHNHYKRLVHDEEPETDV--ELDKSNILLIGPTG 145 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 146 SGKTLLARTLARVLNVPFAIGDATTLTEAGYVGEDVENILLKLLHAA 192 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 100/242 (41%), Gaps = 63/242 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 202 GIVYIDEIDKIGKTSHNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQM 261 Query: 292 NTDHILFIASGAF---------HVSRP-------------------ADLL---------- 313 +T +ILFI G F + R ADLL Sbjct: 262 DTTNILFICGGTFVGLDNIIARRIGRKTIGFGGAMGDSDSAREKNLADLLNQVTSDDVLE 321 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L L+ ILT+ + L+ QY+ L + EG L F +++ Sbjct: 322 FGLIPEFIGRLPVICPLMPLDVEALVQILTEPRNALVKQYQRLFEMEGAKLQFDSEALRE 381 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA---SDLQEKTVVIDAEYVRLHIGDF 426 +A +A D GAR L++++E + DI F D EK ++ VR + F Sbjct: 382 IAILAKER-----DTGARGLRSIIEDTMLDIMFELPERPDKTEKIFLVTPAVVRREVSLF 436 Query: 427 PS 428 S Sbjct: 437 DS 438 >gi|222099516|ref|YP_002534084.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga neapolitana DSM 4359] gi|221571906|gb|ACM22718.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga neapolitana DSM 4359] Length = 406 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI +ELD+YIIGQ+ AKR +++A+ N ++R D E+ N+LL+GPTG GK Sbjct: 57 TPAEIKAELDKYIIGQERAKRILSVAVYNHYKRVFSNLSSNDVEIEKSNVLLIGPTGTGK 116 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA++ PF + T TE GYVG +VE ++ L++ A Sbjct: 117 TYLARILAKILNVPFAIADATPLTEAGYVGEDVENVVLRLLEAA 160 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 59/219 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 168 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQEFI 227 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFI GAF HV+ P DL Sbjct: 228 KVDTRNILFIVGGAFDGLEEIIKRRLQSTTMGFGAEIKSKKEMRIGEILRHVT-PDDLVQ 286 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L L + D IL + ++ ++ QY++L + +G+ L+ T++++ Sbjct: 287 YGLIPEFVGRLPVIATLDDLTEEDLIRILKEPKNAIVKQYQKLFEIDGVKLEVTDEALRI 346 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 +A A+ + GAR L+ V E ++ D+ F L+ Sbjct: 347 IAREALKRGT-----GARALRNVFEELMIDMMFELPSLK 380 >gi|260887081|ref|ZP_05898344.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] gi|330839142|ref|YP_004413722.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] gi|260863143|gb|EEX77643.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] gi|329746906|gb|AEC00263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] Length = 425 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 4/105 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI LD+Y+IGQ++AK+++++A+ N ++R Q AD EL NIL++GPTG G Sbjct: 64 PKEIRQILDQYVIGQEEAKKSLSVAVYNHYKRINRTQGKAD-EVELQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILF+ GAF V R P DLL Sbjct: 237 DTTNILFLCGGAFDGIEKIIEARLGKKNMGFGAEIESKVERNIGETLRHILPEDLLKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L++L + ILT+ ++ L+ QY++L++ +G+ LDF E+++ +A Sbjct: 297 IPEFIGRLPIVVTLEALGEDTLVRILTEPKNALVKQYQKLLEMDGVKLDFDEEALHLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ ++ + Sbjct: 357 EALKRKT-----GARGLRSIIESIMRNVMY 381 >gi|254418572|ref|ZP_05032296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas sp. BAL3] gi|196184749|gb|EDX79725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brevundimonas sp. BAL3] Length = 422 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRDVLDDYVIGQSHAKKVLSVAVHNHYKRLNHATKNNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DL+ Sbjct: 238 DTANILFIVGGAFAGLEKVISARGAGASIGFGAQVKEIDERRTGDILKGVEPDDLMRFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT+ ++ L+ QYK L + E + L FT+D++ A+A Sbjct: 298 IPEFIGRLPVLATLEDLDETALVTILTEPKNALVKQYKRLFEMENVELTFTDDALIAVAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L + F Sbjct: 358 KAITRKT-----GARGLRSILEGILLETMF 382 >gi|170718337|ref|YP_001783565.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus 2336] gi|189044137|sp|B0UW19|CLPX_HAES2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|168826466|gb|ACA31837.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus somnus 2336] Length = 414 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + + + EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR+ PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ S+ + G + Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRV 236 Query: 292 NTDHILFIASGAF-----------------------------HVS--------RPADLL- 313 +T ILFI GAF VS P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIEKRTNTSGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMK 296 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L L++ ILT+ ++ L QY+ L E I L+FT++++ A Sbjct: 297 FGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIA 356 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A+ + GAR L++++E +L D + ++ + V+++ E V Sbjct: 357 MAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETV 402 >gi|307297283|ref|ZP_07577089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales bacterium mesG1.Ag.4.2] gi|306916543|gb|EFN46925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermotogales bacterium mesG1.Ag.4.2] Length = 403 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 70/104 (67%), Gaps = 3/104 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I ELD+Y+IGQ++AK+ +++++ N ++R + D+ D E+ NI+LVGPTG GK Sbjct: 56 TPADIKKELDKYVIGQENAKKTISVSVYNHYKR--VFNDVDDVEIEKSNIMLVGPTGSGK 113 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I+R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 114 TLIARVLARILDVPFAIADATPLTEAGYVGEDVENIVLRLLQSA 157 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG++ + ++ + Sbjct: 167 GIIYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTTANVPPQGGRKHPYQEFIKV 226 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DL+ Sbjct: 227 DTSNILFIVGGAFDGLDSVIKQRVLDSSMGFGAKVKGKNQLRLGEVLQQVVPDDLIQYGL 286 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GRFPV L L+ D + I+++ + ++ QY+ L+ +G+ L+F++D++ A+A+ Sbjct: 287 IPEFVGRFPVLAALNDLDVEDLKRIMSEPRNAILKQYQRLLGLDGVELEFSDDAMTAIAE 346 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A+ + GAR L++V+E+V+ DI F + EK V+ Sbjct: 347 RAMKRGT-----GARALKSVIEQVMLDIMFDIPTMNNVEKVVI 384 >gi|58337154|ref|YP_193739.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus acidophilus NCFM] gi|227903730|ref|ZP_04021535.1| ATP-dependent protease ATP-binding subunit [Lactobacillus acidophilus ATCC 4796] gi|58254471|gb|AAV42708.1| ATP-dependent protease [Lactobacillus acidophilus NCFM] gi|227868617|gb|EEJ76038.1| ATP-dependent protease ATP-binding subunit [Lactobacillus acidophilus ATCC 4796] Length = 420 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|30264540|ref|NP_846917.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Ames] gi|42783609|ref|NP_980856.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus ATCC 10987] gi|47530003|ref|YP_021352.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. 'Ames Ancestor'] gi|49187364|ref|YP_030616.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Sterne] gi|49481515|ref|YP_038522.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141034|ref|YP_085795.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus E33L] gi|65321841|ref|ZP_00394800.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Bacillus anthracis str. A2012] gi|165872008|ref|ZP_02216649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0488] gi|167636206|ref|ZP_02394510.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0442] gi|167640744|ref|ZP_02399004.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0193] gi|170688644|ref|ZP_02879849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0465] gi|170708362|ref|ZP_02898806.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0389] gi|177653998|ref|ZP_02936039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0174] gi|190566821|ref|ZP_03019737.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis Tsiankovskii-I] gi|196034498|ref|ZP_03101907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus W] gi|196039273|ref|ZP_03106579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus NVH0597-99] gi|196044901|ref|ZP_03112135.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus 03BB108] gi|206975965|ref|ZP_03236875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus H3081.97] gi|217961964|ref|YP_002340534.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus AH187] gi|218905674|ref|YP_002453508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus AH820] gi|222097918|ref|YP_002531975.1| ATP-dependent protease ATP-binding subunit clpx [Bacillus cereus Q1] gi|225866453|ref|YP_002751831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus 03BB102] gi|227817253|ref|YP_002817262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. CDC 684] gi|228948186|ref|ZP_04110470.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093569|ref|ZP_04224670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-42] gi|229124012|ref|ZP_04253204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus 95/8201] gi|229198601|ref|ZP_04325303.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus m1293] gi|229600744|ref|YP_002868756.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0248] gi|254687038|ref|ZP_05150896.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. CNEVA-9066] gi|254724600|ref|ZP_05186383.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. A1055] gi|254736576|ref|ZP_05194282.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Western North America USA6153] gi|254741614|ref|ZP_05199301.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Kruger B] gi|254754788|ref|ZP_05206823.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Vollum] gi|254757620|ref|ZP_05209647.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus anthracis str. Australia 94] gi|301055979|ref|YP_003794190.1| ATP-dependent protease ATP-binding subunit [Bacillus anthracis CI] gi|46576502|sp|Q81LB9|CLPX_BACAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|61211433|sp|Q633X2|CLPX_BACCZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|61211498|sp|Q6HD54|CLPX_BACHK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|61211550|sp|Q72ZV4|CLPX_BACC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706576|sp|B7JQ65|CLPX_BACC0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706579|sp|B7HQN2|CLPX_BACC7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763832|sp|C3P9F7|CLPX_BACAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763833|sp|C3L704|CLPX_BACAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763834|sp|C1ETR8|CLPX_BACC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763835|sp|B9IZ47|CLPX_BACCQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|30259198|gb|AAP28403.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. Ames] gi|42739538|gb|AAS43464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus ATCC 10987] gi|47505151|gb|AAT33827.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. 'Ames Ancestor'] gi|49181291|gb|AAT56667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. Sterne] gi|49333071|gb|AAT63717.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974503|gb|AAU16053.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus E33L] gi|164712298|gb|EDR17834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0488] gi|167511316|gb|EDR86702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0193] gi|167528427|gb|EDR91195.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0442] gi|170126737|gb|EDS95620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0389] gi|170667330|gb|EDT18088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0465] gi|172081053|gb|EDT66131.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0174] gi|190561812|gb|EDV15781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis Tsiankovskii-I] gi|195993040|gb|EDX56999.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus W] gi|196024389|gb|EDX63062.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus 03BB108] gi|196029900|gb|EDX68501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus NVH0597-99] gi|206745717|gb|EDZ57114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus H3081.97] gi|217063701|gb|ACJ77951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus AH187] gi|218538609|gb|ACK91007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus AH820] gi|221241976|gb|ACM14686.1| ATP-dependent Clp protease, ATP-binding subunit [Bacillus cereus Q1] gi|225787496|gb|ACO27713.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus 03BB102] gi|227002540|gb|ACP12283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. CDC 684] gi|228584883|gb|EEK42999.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus m1293] gi|228659314|gb|EEL14962.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus 95/8201] gi|228689778|gb|EEL43584.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-42] gi|228811544|gb|EEM57881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229265152|gb|ACQ46789.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus anthracis str. A0248] gi|300378148|gb|ADK07052.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus biovar anthracis str. CI] gi|324328376|gb|ADY23636.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus thuringiensis serovar finitimus YBT-020] Length = 419 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ ++ F Sbjct: 356 AIERKT-----GARGLRSIIEGLMLEVMF 379 >gi|255528526|ref|ZP_05395308.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium carboxidivorans P7] gi|255507784|gb|EET84242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium carboxidivorans P7] Length = 429 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ +AK+++A+A+ N ++R A+ D EL NILL+GPTG GKT Sbjct: 63 PIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LA+ PF + T TE GYVG +VE I+ L+ Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLI 162 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 NT +ILFI GAF V R P DLL Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K+ IL + ++ L+ QYK L + + + LDF E++++A+A+ Sbjct: 295 IPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEEEALEAIAN 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV D GAR L+ ++E ++DI F +E VVI+ + + Sbjct: 355 EAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTI 397 >gi|83589393|ref|YP_429402.1| ATP-dependent protease ATP-binding subunit ClpX [Moorella thermoacetica ATCC 39073] gi|123524974|sp|Q2RL30|CLPX_MOOTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83572307|gb|ABC18859.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Moorella thermoacetica ATCC 39073] Length = 419 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+I Q AK+A+A+A+ N ++R L + D EL NI+++GPTG GKT Sbjct: 64 PKEIREILDQYVISQDQAKKALAVAVYNHYKRINLGMKMDDVELQKSNIIMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQL 235 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 236 DTTNILFICGGAFDGLDKIIKNRISQKTMGFGAEIRGKNDVQVGDILKQVLPVDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L+++ +LT+ + L+ QY++L + +G+ L+F ED++ +A Sbjct: 296 IPEFVGRLPVIVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E ++ D+ + Sbjct: 356 EAIKRET-----GARGLRAILEEIMLDVMY 380 >gi|157149993|ref|YP_001450429.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus gordonii str. Challis substr. CH1] gi|262282292|ref|ZP_06060060.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp. 2_1_36FAA] gi|189044157|sp|A8AXB9|CLPX_STRGC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157074787|gb|ABV09470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus gordonii str. Challis substr. CH1] gi|262261583|gb|EEY80281.1| ATP-dependent protease ATP-binding subunit [Streptococcus sp. 2_1_36FAA] Length = 409 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E++ L+ Y+IGQ+ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PQELLHILNHYVIGQERAKRALAVAVYNHYKRINF-HDSREEDDVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENESYMQAIIAEDIQKFGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + ++ L+ QY+ L+ + + L+F +D++ +A+ A Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILREPKNALVKQYQALLSYDDVKLEFDDDALQEIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380 >gi|258625373|ref|ZP_05720270.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus VM603] gi|262166051|ref|ZP_06033788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus VM223] gi|262171084|ref|ZP_06038762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus MB-451] gi|258582364|gb|EEW07216.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus VM603] gi|261892160|gb|EEY38146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus MB-451] gi|262025767|gb|EEY44435.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus VM223] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401 >gi|153826369|ref|ZP_01979036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MZO-2] gi|149739847|gb|EDM54038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio cholerae MZO-2] Length = 363 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 54/172 (31%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPAD---- 311 +T ILFI GAF P D Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 L+PE GR PV L L+++ IL + ++ L QY L + +I F Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFDWKTLIWSF 352 >gi|113461576|ref|YP_719645.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus somnus 129PT] gi|122945369|sp|Q0I4F0|CLPX_HAES1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|112823619|gb|ABI25708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus somnus 129PT] Length = 414 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + + + EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR+ PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ S+ + G + Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRV 236 Query: 292 NTDHILFIASGAF-----------------------------HVS--------RPADLL- 313 +T ILFI GAF VS P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIEKRTNTGGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMK 296 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L L++ ILT+ ++ L QY+ L E I L+FT++++ A Sbjct: 297 FGLIPEFIGRLPVIAPLSELDEEALVKILTEPKNALTKQYQVLFSLENIELEFTQEALIA 356 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A+ + GAR L++++E +L D + ++ + V+++ E V Sbjct: 357 MAKKALARKT-----GARGLRSIVETLLLDTMYDLPSIENLQKVIVEEETV 402 >gi|227893377|ref|ZP_04011182.1| ATP-dependent protease ATP-binding subunit [Lactobacillus ultunensis DSM 16047] gi|227864792|gb|EEJ72213.1| ATP-dependent protease ATP-binding subunit [Lactobacillus ultunensis DSM 16047] Length = 432 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+IGQ AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 73 PVEIKKQLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 132 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 133 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 175 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 185 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKM 244 Query: 292 NTDHILFIASGAF----------------------HVSR-----------PADL-----L 313 +T +ILFI GAF VS+ ADL + Sbjct: 245 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVSKVDADDWTRHLTTADLVKFGMI 304 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ +G+ L FT+ ++ A+AD+ Sbjct: 305 PEFIGRIPIITTLDKLDSKDLVRVLTEPKNALVKQYKKLLSLDGVDLKFTDGALKAIADL 364 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N +GAR L+T++E + DI + Sbjct: 365 AIQRN-----MGARGLRTIIENSIMDIMY 388 >gi|260589156|ref|ZP_05855069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] gi|260540576|gb|EEX21145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] Length = 456 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y+IGQ +AK+ +++A+ N ++R + EL NIL++GPTG GK Sbjct: 85 LKPQEIKEILDEYVIGQDEAKKVLSVAVYNHYKRVLSGGNTDVELQKSNILMLGPTGSGK 144 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 145 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 188 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 57/213 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ S ++ Sbjct: 197 YGIIYIDEIDKITRKSENASITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPQQEFIQ 256 Query: 291 INTDHILFIASGAF----------------------------HVSR------PADL---- 312 I+T +ILFI GAF +V P DL Sbjct: 257 IDTTNILFICGGAFEGLDKIIETRKDTKAIGFNAQVQTKEEKNVGELLKEVMPQDLVKFG 316 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L +L+K+ ILT+ +++L+ QY+ L +GI L+F ++++A+A Sbjct: 317 LIPEFVGRVPVVVSLNALDKNALVKILTEPKNSLVRQYQTLFNLDGINLEFEGEALEAIA 376 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 D ++ + GAR L+ +ME + D+ ++A Sbjct: 377 DKSMERKT-----GARGLRAIMENSMMDLMYTA 404 >gi|195952527|ref|YP_002120817.1| ATP-dependent protease ATP-binding subunit ClpX [Hydrogenobaculum sp. Y04AAS1] gi|254763851|sp|B4U6S1|CLPX_HYDS0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|195932139|gb|ACG56839.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hydrogenobaculum sp. Y04AAS1] Length = 399 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI A+ SG+ ++R EGVQ+ LL ++EG+ +V + G Sbjct: 169 GIIYIDEIDKI-AKKSGHNPSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFI 227 Query: 290 SINTDHILFIASGAF--------------------HVSR------------PADLL---- 313 ++T +ILFI GAF +S+ P DL+ Sbjct: 228 QLDTTNILFICGGAFVGLEDIIKRRLGKSTVGFETEISKYKEEGNILSQVEPDDLINFGL 287 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + D ILT+ ++ +I QYKEL++ EGI L+FTE ++ +A Sbjct: 288 IPEFVGRLPVISVLNELTEEDLIRILTEPKNAVIKQYKELLRMEGIGLEFTEGALREIAK 347 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVID 415 A+ + GAR L+ ++E+++ DI + A L + +VID Sbjct: 348 EAIKRKT-----GARGLRAIVEKIMTDIMYEAPSLVNVEKIVID 386 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 3/111 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI LD +IIGQ +AK+ +++A+ N ++R +D ++ NILL+GPTG GKT Sbjct: 60 PKEIKKILDEFIIGQDEAKKILSVAVYNHYKRILRKSD--TDIEKSNILLIGPTGSGKTL 117 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 +++ LA++ PF + T TE GYVG +VE + +R L + NI + + Sbjct: 118 LAKTLAKILNVPFAIADATTLTEAGYVGEDVENVLVRLLQNCDYNIEKAKK 168 >gi|302551408|ref|ZP_07303750.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces viridochromogenes DSM 40736] gi|302469026|gb|EFL32119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces viridochromogenes DSM 40736] Length = 428 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A+ RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGANGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGAQIRSKREMESKDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V+ ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVVQSNV 408 >gi|224532149|ref|ZP_03672781.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia valaisiana VS116] gi|224511614|gb|EEF82020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia valaisiana VS116] Length = 430 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLMRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISRTKKVVVTKESV 397 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|325662257|ref|ZP_08150872.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA] gi|331086069|ref|ZP_08335152.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471509|gb|EGC74730.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 4_1_37FAA] gi|330406992|gb|EGG86497.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 9_1_43BFAA] Length = 484 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I ++LD Y++GQ+ AK+A+A+A+ N ++R + D D E+ N+L++GPTG G Sbjct: 133 APHKIKAKLDEYVVGQEHAKKAMAVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 190 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ R Sbjct: 191 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 244 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 245 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 304 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 305 KNILFICGGAFPDLEEIIKERLNKQASIGFTADLKDKWNHDKNILEKVTAEDLRNFGMIP 364 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ LN+ IL + ++ ++ QY++L+ + + L+F E +++A+A A Sbjct: 365 EFIGRLPIIFTLQGLNEEMLVKILKEPKNAILKQYQKLLALDEVKLEFDEAALEAIAKRA 424 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + N+ GAR L+ ++E + DI + D V I EY+ Sbjct: 425 MEKNT-----GARALRAIIEEFMLDIMYEIPKDDNIGQVTITKEYIE 466 >gi|258621303|ref|ZP_05716337.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus VM573] gi|258586691|gb|EEW11406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus VM573] Length = 426 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR+I LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTGDGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADL--- 312 +T ILFI GAF + R P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIERRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L + E + L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTATLTELDEAALIQILCEPKNALTKQYAALFELENVDLEFREDALKAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + ++E VVID Sbjct: 361 AAKAMKRKT-----GARGLRSILEAVLLETMYELPSMEEVSKVVID 401 >gi|24379392|ref|NP_721347.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus mutans UA159] gi|290580606|ref|YP_003484998.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans NN2025] gi|46576567|sp|Q8DUI0|CLPX_STRMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24377322|gb|AAN58653.1|AE014935_5 ATP-dependent protease Clp, ATPase subunit ClpX [Streptococcus mutans UA159] gi|254997505|dbj|BAH88106.1| ATP-dependent protease Clp ATPase subunit [Streptococcus mutans NN2025] Length = 410 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E+++ LD Y+IGQ AKRA+A+A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLAILDSYVIGQDRAKRALAVAVYNHYKRISFTESQDDQDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKKIDDQSSYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ ++ L+ QY+ L+ +G+ L+F ++++ A+A A Sbjct: 298 EFIGRLPVLAALEQLTVDDLVKILTEPKNALVKQYQTLLSYDGVELEFDQEALQAIAQKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + D+ F ++ T V Sbjct: 358 IERKT-----GARGLRSIIEETMLDLMFEIPSQEDVTCV 391 >gi|254488366|ref|ZP_05101571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. GAI101] gi|214045235|gb|EEB85873.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseobacter sp. GAI101] Length = 421 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P++I LD Y+IGQ AK+ +++A+ N ++R Q D+ EL NILL+GPTG Sbjct: 65 TPKDICDVLDDYVIGQAMAKKVLSVAVHNHYKRLNHAQKGGDI--ELAKSNILLIGPTGC 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 123 GKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQR 177 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 238 DTTNILFICGGAFAGLDRIIAARGKGSAMGFGADVRDKDARGIGEIFTDLEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT ++ L+ QY+ L + E L FT+D++ A+A Sbjct: 298 IPEFVGRLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFEIEDTQLTFTDDALAAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L++++E +L D F + T VV++ E V Sbjct: 358 RAIERKT-----GARGLRSILEDILLDTMFELPGMDTVTEVVVNEEAV 400 >gi|149196343|ref|ZP_01873398.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa HTCC2155] gi|149140604|gb|EDM29002.1| ATP-dependent protease ATP-binding subunit [Lentisphaera araneosa HTCC2155] Length = 429 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 2 KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRD-ELMPKN 55 K+ FN +P+EI LD Y+IGQ AKR +++A+ N ++R Q P D E+ N Sbjct: 63 KIPFNLLAPKEIKHVLDDYVIGQDYAKRTLSVAVYNHYKRVQNNLFHPEGAHDLEMEKSN 122 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +LL+GP+G GKT +++ LA++ PF + T TE GYVG +VE II L+ A Sbjct: 123 VLLLGPSGCGKTLLAKTLAKVLDVPFTIFDATTVTEAGYVGEDVENIILRLIQAA 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 63/233 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YG 289 YGI+++DE DK + I VS EGVQ+ LL ++EG+ + Y Sbjct: 185 QYGIIYVDEIDKKAKKGENMSITRDVSGEGVQQSLLKIIEGTHCNVPPKGGRKHPNQDYI 244 Query: 290 SINTDHILFIASGAF--------------------------------HVSR---PADL-- 312 I+T +ILFI +GAF + R P DL Sbjct: 245 QIDTRNILFICAGAFVGLEDVIRGRLGRRVIGFADQGNGVKSDAEIEEIMREVEPGDLVK 304 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE+ GR PV L L + D ILT+ ++++I QY+ ++ ++GI L F+++++ Sbjct: 305 YGLIPELIGRLPVISTLNPLKEEDLVHILTNVKNSIIKQYQYILMSDGIKLSFSDEALKE 364 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 +A A++ + GAR L++++E+ + ++ F S +D++E V+I E+V Sbjct: 365 MAHQAIDKGT-----GARGLRSILEKSMLELMFELPSRTDVEE--VIISKEFV 410 >gi|319939271|ref|ZP_08013634.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus anginosus 1_2_62CV] gi|319811667|gb|EFW07943.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus anginosus 1_2_62CV] Length = 410 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R + DE L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNHEDEEDVELQKSNILMIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKSIDETGSYMQEIISEDIQKFGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + ++ L+ QY+ L+ + + L+F +D++ +A+ A Sbjct: 299 ELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381 >gi|15606540|ref|NP_213920.1| ATP-dependent protease ATP-binding subunit [Aquifex aeolicus VF5] gi|6225162|sp|O67356|CLPX_AQUAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2983756|gb|AAC07316.1| ATP-dependent protease ATPase subunit clpX [Aquifex aeolicus VF5] Length = 412 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI A+ SG ++R EGVQ+ LL +VEGS V+ ++ Sbjct: 177 GIVYIDEIDKI-AKKSGINPSITRDVSGEGVQQALLKIVEGSVVNVPPQGGRKHPHQEFI 235 Query: 290 SINTDHILFIASGAF-----------------------HVSRPADLL------------- 313 ++T ILFI GAF V + DLL Sbjct: 236 QVDTTDILFICGGAFVGLEDIIKQRLGKSRVGFEAEIKKVDKEQDLLELVEPDDLIRFGM 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GRFPV L+ L + + IL + ++ L+ QY++L + EG+ L FTE ++ +A Sbjct: 296 IPEFIGRFPVIATLRELTEDELVRILVEPKNALVKQYQKLFELEGVKLTFTEKALREIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+ +ME ++ DI F L K V+ID V+ Sbjct: 356 EAIRRKT-----GARGLRAIMEDIMADIMFEVPSLPGVKEVIIDENVVK 399 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 18/146 (12%) Query: 2 KLTFNF------SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-EL 51 K ++NF P +I LD Y+IGQ+ AK+ +++A+ N ++R ++ L D EL Sbjct: 49 KTSYNFELKDIPKPEQIKKILDEYVIGQERAKKILSVAVYNHYKRIKAKEAGLSLDDVEL 108 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT ++R LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 109 EKSNILLIGPTGSGKTLLARTLAKILNVPFAIADATSLTEAGYVGEDVENVLVRLLQACD 168 Query: 112 NIVRESRR--------DEVREQASIN 129 V+ +++ D++ +++ IN Sbjct: 169 YDVKAAQKGIVYIDEIDKIAKKSGIN 194 >gi|269219683|ref|ZP_06163537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 848 str. F0332] gi|269210925|gb|EEZ77265.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces sp. oral taxon 848 str. F0332] Length = 419 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE---LMPKNILLVGPT 62 PREI L+ Y+IGQ AKR +A+A+ N ++R Q P +DE + NILL+GPT Sbjct: 66 PREIYEFLNEYVIGQDTAKRTLAVAVYNHYKRIRAQGGPKRSQDEEVQIGKSNILLLGPT 125 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 GTGKTYLAQSLARMLDVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S +Y + Sbjct: 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEYLQL 242 Query: 292 NTDHILFIASGAF----------------------HVS----------RPADL-----LP 314 +T +ILFI +GAF HV+ P DL +P Sbjct: 243 DTSNILFICAGAFAGMEEIISSRTGRRGIGFGSELHVADNGAEVLSEATPEDLHKFGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV + L + D ILT+ ++ L+ QY+ + + +G+ L +++ ++ A Sbjct: 303 ELVGRLPVVAATEELTEGDLIRILTEPKNALVRQYERMFELDGVRLQIDGEALHEISREA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + + GAR L+++ME +L++ F S SD+++ +V DA V+ Sbjct: 363 IARGT-----GARGLRSIMESLLKEAMFEVPSRSDVEK--IVFDAAAVK 404 >gi|222055724|ref|YP_002538086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. FRC-32] gi|254763849|sp|B9M0Y2|CLPX_GEOSF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|221565013|gb|ACM20985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. FRC-32] Length = 417 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65 P EI LD Y+IGQ+ AK+ +A+A+ N ++R + P ++ E+ NILL+GPTG G Sbjct: 66 PLEIKDVLDEYVIGQKQAKKVLAVAVYNHYKRIEAMTKPGEV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II +L+ A Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILNLLQAA 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTTNILFICGGAFAGLENIIQQRIGVKTLGFGADVKKKIEKKAGELLIGVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ IL + ++ L+ QY++L E + L FT+ S+ A+A Sbjct: 298 IPEFVGRLPVLASLTELDEEAMVQILKEPKNALVKQYQKLFDMEHVKLKFTDGSLVAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S K VVI + + Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQTMVKEVVISEDVI 400 >gi|270263571|ref|ZP_06191840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia odorifera 4Rx13] gi|270042455|gb|EFA15550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia odorifera 4Rx13] Length = 423 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + + VVID Sbjct: 359 AKKAMTRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 399 >gi|310657901|ref|YP_003935622.1| clpx-clpp ATP-dependent serine protease ATPase and specificity subunit [Clostridium sticklandii DSM 519] gi|308824679|emb|CBH20717.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Clostridium sticklandii] Length = 421 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66 P+EI LD Y+IGQ DAK+ +A+A+ N ++R + +D EL NIL++GPTG GK Sbjct: 63 PKEIKDYLDEYVIGQDDAKKTLAVAVYNHYKRIYAVDGKAKDIELQKSNILMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ + Sbjct: 123 TLLAQTLAKMLNVPFAMADATALTEAGYVGEDVENILLKLIQAS 166 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 176 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIIEGTKANVPPQGGRKHPHQEFLQI 235 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 +T +ILFI GAF VS+ DLL Sbjct: 236 DTTNILFIVGGAFDGIDKIIQRRMGEKALGFGAKIVSKNDIAVGEIYKQVQTEDLLRFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ IL + ++ L+ Q+K+L + + +ILD ++++ +A Sbjct: 296 IPEFIGRVPVVVSLDPLDEKALISILKEPKNALVKQFKKLFEMDKVILDIEDEALVEVAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E+V+ DI + Sbjct: 356 KAIAKKT-----GARGLRSILEKVMMDIMY 380 >gi|296184878|ref|ZP_06853289.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium carboxidivorans P7] gi|296050660|gb|EFG90083.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium carboxidivorans P7] Length = 429 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ +AK+++A+A+ N ++R A+ D EL NILL+GPTG GKT Sbjct: 63 PIEIKNYLDQYVIGQNEAKKSLAVAVYNHYKRINSNANNDDVELQKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LA+ PF + T TE GYVG +VE I+ L+ Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLI 162 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 NT +ILFI GAF V R P DLL Sbjct: 235 NTTNILFICGGAFDGVDRIIESRTRVSTLGFGAEIQSKNEKDIGKLLQEIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K+ IL + ++ L+ QYK L + + + LDF E++++A+A+ Sbjct: 295 IPEFVGRLPIVVTLDALDKNALISILKEPKNALVKQYKRLFEIDNVELDFEEEALEAIAN 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 AV D GAR L+ ++E ++DI F +E VVI+ + + Sbjct: 355 EAVKR-----DTGARGLRAIIEETMKDIMFEIPSKEEIAKVVINKDTI 397 >gi|229105111|ref|ZP_04235762.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-28] gi|228678292|gb|EEL32518.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-28] Length = 444 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434 >gi|169334563|ref|ZP_02861756.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM 17244] gi|169259280|gb|EDS73246.1| hypothetical protein ANASTE_00966 [Anaerofustis stercorihominis DSM 17244] Length = 420 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P +I LD Y+IGQ DAK+ +A+A+ N ++R + + D EL NILL GPTG Sbjct: 73 PNKIKELLDEYVIGQDDAKKTLAVAVYNHYKRINVAENSDDKDSDVELQKSNILLTGPTG 132 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 133 SGKTLLASTLARILKVPFAIADATALTEAGYVGEDVENILLRLIQAA 179 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 60/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ + + I Sbjct: 189 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTANVPPQGGRKHPHQDFIQI 248 Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312 +T ILFI GAF +++P D L Sbjct: 249 DTKDILFICGGAFDGLDEVVKKRLGTHSMGFGNDITGVKDKSTDDLFKLAQPQDFVKYGL 308 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ LK L++ ILT ++ LI QYK L+ + + L F +++++ +A Sbjct: 309 IPELVGRLPISASLKKLDEKALVNILTKPKNALIKQYKYLLSLDDVDLHFDKEAVNLIAK 368 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA---SDLQEKTVV 413 V + GAR L++++E ++ D+ + A D++E TV Sbjct: 369 ETVKRET-----GARGLRSILEDIMLDVMYEAPSREDVKELTVT 407 >gi|302391291|ref|YP_003827111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium arabaticum DSM 5501] gi|302203368|gb|ADL12046.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acetohalobium arabaticum DSM 5501] Length = 416 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 1 MKLTFNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNIL 57 M + FN +P+EI LD+Y+IGQ+ AK+ +++A+ N ++R + D EL NI Sbjct: 55 MDVGFNNVPNPQEIKDILDQYVIGQERAKKTLSVAVYNHYKRVNSGMQVDDVELEKSNIC 114 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 115 LIGPTGCGKTLLAQTLAKILDVPFAIADATSLTEAGYVGEDVENILLKLIQAA 167 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312 +T +ILFI GAF HV L Sbjct: 237 DTTNILFICGGAFNGLDDIIKSRIDEKVMGFGADIKSEKDEDIGEVLKHVKSQDVLKYGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L + ILT+ + L+ QY + + +G+ L+FTED++ A+AD Sbjct: 297 IPEFVGRIPVLATLDQLGEDALVEILTEPRNALVKQYTKFFELDGVDLEFTEDALHAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ D GAR L++++E + +I + Sbjct: 357 KALE-----HDTGARGLRSIVEESILEIMY 381 >gi|91216685|ref|ZP_01253650.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis ATCC 700755] gi|91185154|gb|EAS71532.1| ATP-dependent protease ATP-binding subunit [Psychroflexus torquis ATCC 700755] Length = 410 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 56/226 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ K+ Sbjct: 173 HGIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIE 232 Query: 291 INTDHILFIASGAF-----HVSR----------------------------PADL----- 312 +NT++ILFIA GAF ++S+ P DL Sbjct: 233 VNTENILFIAGGAFDGIEKNISKRLNMQAVGYGASKLGESVDKENILQYIIPKDLKDYGL 292 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PEI GR PV ++ L+K R ILT+ ++ +I QYK+L + + I T+ ++D + Sbjct: 293 IPEIIGRLPVLTYMDPLDKETLRRILTEPKNAIIKQYKKLFEMDNIDFQITDGALDFIVQ 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F + E + Y Sbjct: 353 KALEYK-----LGARGLRSLCEAILTDAMFYLPESDETEFKVTKSY 393 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+ I LD+Y+IGQ K+ +++A+ N ++R P D E+ NI++ G TG GKT Sbjct: 62 PKAIKDFLDQYVIGQDQTKKVMSVAVYNHYKRLLQPKSKDDIEIQKSNIIMAGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LVAKTIAKMLNVPLAIVDATVLTEAGYVGEDVETILTKLLAAA 164 >gi|239979445|ref|ZP_04701969.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces albus J1074] gi|291451315|ref|ZP_06590705.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus J1074] gi|291354264|gb|EFE81166.1| ATP-dependent protease ATP-binding subunit [Streptomyces albus J1074] Length = 428 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q P D EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEPAKKALSVAVYNHYKRVQAGQNGAPGGREDAIELGKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEEKDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VVI AE V+ ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITAEVVQSNV 408 >gi|88810608|ref|ZP_01125865.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis Nb-231] gi|88792238|gb|EAR23348.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis Nb-231] Length = 425 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD Y+IGQ+ AK+ +++A+ N ++R + + EL NILL+GPTG GKT Sbjct: 69 PHEIKTVLDDYVIGQEQAKKVLSVAVYNHYKRMEASHSKSEVELSKSNILLIGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 LLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 168 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFHV-----------------------------------SRPADLL--- 313 NT +ILFI GAF P DL+ Sbjct: 241 NTGNILFICGGAFAGLEKIIQQRSERGGIGFSAEIKGREQRKSIGDSLRDVEPEDLIRYG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L++ IL + ++ L+ QY++L EG L+F ED++ +A Sbjct: 301 LIPEFVGRMPVVATLTELDEEALMRILIEPKNALVKQYQKLFTMEGAALEFREDALRGVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L+T++ERVL D + ++ + V+ E V Sbjct: 361 RNAMERKT-----GARGLRTLIERVLLDTMYELPSMEHVSKVVVDESV 403 >gi|330836760|ref|YP_004411401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta coccoides DSM 17374] gi|329748663|gb|AEC02019.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta coccoides DSM 17374] Length = 410 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 4/116 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI S LD Y+IGQ AKR +++A+ N ++R +L + E+ NIL++GPTG Sbjct: 59 TPQEIKSYLDDYVIGQDAAKRVLSVAVYNHYKRIKYQNRLSKEEGVEMDKSNILMIGPTG 118 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LAR PF + T TE GYVG +VE I+ L+ A + + E+ R Sbjct: 119 TGKTLLARTLARKLKVPFAIADATTLTEAGYVGEDVENILLKLIQNANDNIAEAER 174 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 175 GIIFIDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTEANVPPQGGRKHPNQEMIKI 234 Query: 292 NTDHILFIASGAFH----------VSRPAD----------------------------LL 313 NT +ILFI GAF S+P L+ Sbjct: 235 NTSNILFICGGAFVGLEKVIEKRVASQPMGFGATLSSSQKDLSTLYKELLPDDLVKFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ V L +L K D I+++ ++ ++ QY K + + L+F ++++DA+A+ Sbjct: 295 PEFIGRLPIHVSLDNLKKEDLIRIISEPKNAILRQYVASFKLDNVSLEFKQEAVDAIAEK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E ++ DI + + K VVID + V Sbjct: 355 AIGQKT-----GARGLRSIVENIMIDIMYDIPSMSNVKKVVIDRDAV 396 >gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] Length = 417 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 105/228 (46%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + + I VS EGVQ+ LL L+EG+ SV K G + Sbjct: 185 GIIFIDEIDKIARKTANPSITRDVSGEGVQQGLLKLLEGTVASVPPKGGRKHPEQPLVQV 244 Query: 292 NTDHILFIASGAF----------------------HVS------------RPADLL---- 313 NT +ILFI GAF H + P DL+ Sbjct: 245 NTRNILFICGGAFETLDKIISQRVNQGGMGFGADIHTASENSLSELFKQLEPEDLIKFGL 304 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PEI GR P+ V L+ L+++ ILT ++ L+ QYK L + I L+F +D++ + Sbjct: 305 IPEIVGRLPIAVALEELDETALLNILTKPKNALVKQYKSLFAMDNIKLEFEDDALKEIVR 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + + GAR L++VMERVL+ F EK + E V+ Sbjct: 365 ETMTRKT-----GARGLRSVMERVLQQAMFKMPGSGEKKFTVTVEMVK 407 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI + LD ++IGQ AK A+++A+ N ++R + + ++ N+LLVGPTG Sbjct: 70 PTEIKAHLDDFVIGQDRAKMALSVAVYNHYKRLRYKQTHKSKDDVDVEKSNLLLVGPTGS 129 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR PF + T TE GYVG +V+ II L+ A Sbjct: 130 GKTLLAQTMARFLDVPFTIADATVLTEAGYVGEDVDSIIVRLLQAA 175 >gi|85058650|ref|YP_454352.1| ATP-dependent protease ATP-binding subunit [Sodalis glossinidius str. 'morsitans'] gi|123519920|sp|Q2NV78|CLPX_SODGM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|84779170|dbj|BAE73947.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis glossinidius str. 'morsitans'] Length = 424 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEKAKKVLAVAVYNHYKR------LRNGDTNNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF----------------------------HVSR--------PADLL-- 313 +T ILFI GAF V++ P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTETNRGIGFSATVKGSSEKVTKGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLNELSEEALIQILHEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A A+ + GAR L++++E L + + + D EK V+ +A Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLETMYELPSQDSVEKVVIDEA 401 >gi|15895897|ref|NP_349246.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium acetobutylicum ATCC 824] gi|21263476|sp|Q97FT7|CLPX_CLOAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15025666|gb|AAK80586.1|AE007761_5 ATP-dependent protease Clp, ATPase subunit ClpX [Clostridium acetobutylicum ATCC 824] gi|325510049|gb|ADZ21685.1| ATP-dependent protease ATP-binding subunit [Clostridium acetobutylicum EA 2018] Length = 432 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD+Y++GQ+DAK+++++A+ N ++R L + EL NILL+GPTG GK Sbjct: 63 PSEIKDYLDQYVVGQEDAKKSLSVAVYNHYKRINSNLSNNDDIELQKSNILLLGPTGCGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TFLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----------HVSR-----------------------PADLL---- 313 NT +ILFI GAF VS P DLL Sbjct: 236 NTTNILFICGGAFDGVDKIIENRTRVSTIGFGASIQSKQQKDIGAILKKIMPGDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L SL++ +L++ ++ L+ QY++L++ + + L+F + ++ A+A Sbjct: 296 IPEFIGRLPIIVTLNSLDQGALVKVLSEPKNALVKQYEKLLQMDNVELEFKDGALKAIAS 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ ++ GAR L+ ++E +++DI F Sbjct: 356 EAISRST-----GARGLRAIVEDIMKDIMF 380 >gi|268592035|ref|ZP_06126256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rettgeri DSM 1131] gi|291312427|gb|EFE52880.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rettgeri DSM 1131] Length = 425 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 66 TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESDKATEGELLTQAEPEDLIKF 299 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L E L+F E+++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLENTELEFREEALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E L + + S SD+++ VV+D Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400 >gi|229032126|ref|ZP_04188103.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1271] gi|228729182|gb|EEL80181.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1271] Length = 444 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434 >gi|163942220|ref|YP_001647104.1| ATP-dependent protease ATP-binding subunit [Bacillus weihenstephanensis KBAB4] gi|229013688|ref|ZP_04170817.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides DSM 2048] gi|229135318|ref|ZP_04264112.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST196] gi|229169215|ref|ZP_04296929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH621] gi|229175154|ref|ZP_04302670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus MM3] gi|163864417|gb|ABY45476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus weihenstephanensis KBAB4] gi|228608290|gb|EEK65596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus MM3] gi|228614281|gb|EEK71392.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH621] gi|228648141|gb|EEL04182.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST196] gi|228747610|gb|EEL97484.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus mycoides DSM 2048] Length = 444 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434 >gi|197117661|ref|YP_002138088.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter bemidjiensis Bem] gi|253701608|ref|YP_003022797.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacter sp. M21] gi|238690892|sp|B5EI28|CLPX_GEOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|259491260|sp|C6E2S9|CLPX_GEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|197087021|gb|ACH38292.1| ATP-dependent chaperone and Clp protease specificity component ClpX [Geobacter bemidjiensis Bem] gi|251776458|gb|ACT19039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacter sp. M21] Length = 417 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65 P+EI LD Y+IGQ AK+ +A+A+ N ++R + P D+ E+ NILL+GPTG G Sbjct: 66 PQEIKEVLDEYVIGQSRAKKVLAVAVYNHYKRVEAAVKPGDV--EMQKSNILLLGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ + Sbjct: 124 KTLLAQTLARILKVPFAMADATNLTEAGYVGEDVENIILTLLQAS 168 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 238 DTTNILFICGGAFPGLDSIIQQRIGVKTLGFGADVKKKVEKKAGELLAGVTPEDLLKFGF 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ IL + ++ LI QY++L E + L FT+ S+ A+A Sbjct: 298 IPEFVGRLPMLASLSELDEEAMVQILKEPKNALIKQYQKLFDMEHVKLKFTDGSLVAIAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L++++E + DI + S K VVI+ E + Sbjct: 358 EALKRKT-----GARGLRSILENAMLDIMYEIPSQSMVKEVVINEEVI 400 >gi|81428671|ref|YP_395671.1| ATP-dependent protease ATP-binding subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610313|emb|CAI55362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus sakei subsp. sakei 23K] Length = 417 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 PREI++ L+ Y+IGQ +AK+A+++A+ N ++R Q A+ D EL NI L+GPTG G Sbjct: 65 PREILAILNDYVIGQTEAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTFLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 179 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQI 238 Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313 +T +ILFI GAF + D ++ Sbjct: 239 DTTNILFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQFGII 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ L+ QY +LM + + L+FT +++ A+A + Sbjct: 299 PEFIGRIPITAALEKLTEDDLVRILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHL 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E V+ D+ F Sbjct: 359 AIERNT-----GARGLRSIIEEVMMDMMF 382 >gi|330718624|ref|ZP_08313224.1| ATP-dependent protease ATP-binding subunit ClpX [Leuconostoc fallax KCTC 3537] Length = 374 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P +IV++L+ Y+IGQ +AK+ +A+A+ N ++R + L EL NI L+GPTG G Sbjct: 23 TPHDIVAKLNDYVIGQDEAKKTLAVAVYNHYKRINESLVKTTDVELQKSNIALLGPTGSG 82 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 83 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 127 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 137 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKLLEGTTASVPPQGGRKHPQQELIQV 196 Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312 NT +ILFI GAF HV+ L Sbjct: 197 NTTNILFIVGGAFAGIDTLIKERLGERVIGFGMDANRTDEFLSGNILRHVASEDLTKFGL 256 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L D ILT+ ++ +I QY+ L+ + + L+F +++ A+A Sbjct: 257 IPEFIGRLPIITVLDELKIDDLVRILTEPKNAVIKQYQALLGFDDVDLEFQPEALQAMAS 316 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A++ + GAR L++++E+V++DI + Sbjct: 317 LAIDRKT-----GARGLRSIIEKVMKDIMY 341 >gi|312882506|ref|ZP_07742247.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio caribbenthicus ATCC BAA-2122] gi|309369906|gb|EFP97417.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio caribbenthicus ATCC BAA-2122] Length = 427 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 PREI LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 68 PREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDTELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL + + +++ VVID ++ Sbjct: 361 AKKAMDRKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDDSVIK 406 >gi|229087037|ref|ZP_04219191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-44] gi|228696300|gb|EEL49131.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-44] Length = 419 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELSKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEGALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379 >gi|319941576|ref|ZP_08015902.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella wadsworthensis 3_1_45B] gi|319804946|gb|EFW01788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sutterella wadsworthensis 3_1_45B] Length = 456 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 7/110 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-----LRD--ELMPKNILLVG 60 +PRE+ LD Y+IGQ+ AKR +++A+ N ++R D L D EL N+LL+G Sbjct: 80 TPRELYELLDNYVIGQERAKRTLSVAVFNHYKRLNTLGDKKLKALEDKVELQKSNVLLIG 139 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR PF + T TE GYVG +VE I+ LV A Sbjct: 140 PTGSGKTLLAQTLARALDVPFAIADATTLTEAGYVGEDVENIVAKLVQAA 189 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI++LDE DKI + I VS EGVQ+ LL LVEG+ S+ K G + Sbjct: 199 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTIASMPVKGGRKNPGKAMMEV 258 Query: 292 NTDHILFIASGAF--------HVSRPAD-------------------------------L 312 +T ILFI GAF H + ++ L Sbjct: 259 DTSQILFICGGAFDGMERIVRHRTEKSEIGFSGTVVGKKDHNLTDVFRQIETGDLVKYGL 318 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ LN+ ILT ++ ++ QY+ L E + ++FT +++ A+A Sbjct: 319 IPELVGRLPVITVLEELNEEALIEILTKPKNAIVRQYQVLFAMEDVDIEFTPEALKAIAH 378 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E +L D F Sbjct: 379 QAIERKT-----GARGLRSIIEALLLDTMF 403 >gi|319758057|gb|ADV69999.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis JS14] Length = 408 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D RDE L NIL++GPTG Sbjct: 63 PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF H +R D ++P Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L L D ILT+ ++ L+ QY+ + + + LDF ED++ A+A+ A Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTFLSYDDVELDFDEDALLAIAEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379 >gi|331001371|ref|ZP_08324995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parasutterella excrementihominis YIT 11859] gi|329568630|gb|EGG50432.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parasutterella excrementihominis YIT 11859] Length = 441 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R + +D + E+ NILL+GPT Sbjct: 92 TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 G GKT +++ LA++ PF + T TE GYVG +VE +I L+ Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLL 196 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI++LDE DKI + I VS EGVQ+ LL LVEG+ + + Sbjct: 209 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPV 268 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312 +T +ILFI GAF + AD L Sbjct: 269 DTSNILFICGGAFEGLDKIIRRRTERSGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGL 328 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ ILT+ ++ ++ QY L + EG++L+ D++ A Sbjct: 329 IPELVGRLPVIATLDDLDEEALIRILTEPKNAVLKQYARLFELEGVVLEVEPDALKEAAK 388 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A + GAR L++++E L F Sbjct: 389 MAQERKT-----GARGLRSIIENALLSAMF 413 >gi|242240291|ref|YP_002988472.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya dadantii Ech703] gi|242132348|gb|ACS86650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya dadantii Ech703] Length = 424 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + A+ EL NILL+GPTG GK Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGEANGGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313 +T ILFI GAF HV P DL+ Sbjct: 239 DTSKILFICGGAFAGLDRIIEQRTDTGRGIGFNATVKGSTQKATEGELLGHVE-PGDLIK 297 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV LK L++ IL + ++ L QY+ L K EG+ L+F ++++ A Sbjct: 298 FGLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGVDLEFRDEALTA 357 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 +A A+ + GAR L++++E L D + L+ VVID Sbjct: 358 IAKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSLENVDKVVID 399 >gi|212709198|ref|ZP_03317326.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM 30120] gi|212688110|gb|EEB47638.1| hypothetical protein PROVALCAL_00231 [Providencia alcalifaciens DSM 30120] Length = 425 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 66 TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAQVKGESEKATEGELLTQAEPEDLIKF 299 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F E+++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILKEPKNALTKQYQALFNLEGTELEFREEALTAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E L + + S SD+++ VV+D Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400 >gi|261822506|ref|YP_003260612.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium wasabiae WPP163] gi|261606519|gb|ACX89005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pectobacterium wasabiae WPP163] Length = 424 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 101/227 (44%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313 +T ILFI GAF HV P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKATEGELLSHV-EPGDLIK 297 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A Sbjct: 298 FGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTA 357 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 +A A+ V GAR L++++E L + + L+ VVID Sbjct: 358 IAKKAM-----VRKTGARGLRSIVEAALLETMYDLPSLESVDKVVID 399 >gi|127513435|ref|YP_001094632.1| ATP-dependent protease ATP-binding subunit [Shewanella loihica PV-4] gi|166215203|sp|A3QFX5|CLPX_SHELP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126638730|gb|ABO24373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella loihica PV-4] Length = 426 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNATPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRSHVGTGIGFGAEVKGEADKATISDVLLQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ L Q+ L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E +L DI + + VVID V+ Sbjct: 360 ALKAMDRKT-----GARGLRSIVEGILLDIMYDLPSTENVAKVVIDESVVK 405 >gi|56964401|ref|YP_176132.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus clausii KSM-K16] gi|61211410|sp|Q5WEN9|CLPX_BACSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56910644|dbj|BAD65171.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus clausii KSM-K16] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI S LD Y+IGQ++AK+++++A+ N ++R + D EL NI L+GPTG GKT Sbjct: 64 PNEICSILDDYVIGQREAKKSLSVAVYNHYKRINSMSRSEDVELSKSNITLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI GAF ++S+ P DLL Sbjct: 236 DTTNVLFICGGAFDGIEQIIKRRLGKKVIGFGTDDAKQDDLKPGEYLSKVLPEDLLRFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ ILT ++ L+ QY++L++ + + L+FTED++ +A+ Sbjct: 296 IPEFIGRLPIISSLSPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTEDALREIAN 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 KAIERKT-----GARGLRSIIEGIMLDVMF 380 >gi|152978445|ref|YP_001344074.1| ATP-dependent protease ATP-binding subunit [Actinobacillus succinogenes 130Z] gi|171704241|sp|A6VME2|CLPX_ACTSZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|150840168|gb|ABR74139.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinobacillus succinogenes 130Z] Length = 411 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 13/107 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ AK+ +A+AL N ++R LR EL N+LL+G Sbjct: 63 TPHEIREHLDDYVIGQDYAKKVLAVALYNHYKR------LRSGHKTDAVELSKSNVLLIG 116 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 117 PTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENIIQKLL 163 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 176 GIIYIDEIDKITRKSANPSITRDVSGEGVQQALLKMIEGTIAAVPPQGGRKHPQQDMIRV 235 Query: 292 NTDHILFIASGAF-----------HVSR------------------------------PA 310 +T ILFI GAF HV Sbjct: 236 DTSKILFICGGAFAGLDKIIEKRVHVGSGIGFNAEVKGEQDELTLTDLFKQIETEDLIKF 295 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR PV L L+++ ILT+ ++ L QY+ L E + L+FT +S+ A+ Sbjct: 296 GMIPEFIGRLPVIAPLSELDENALISILTEPKNALTKQYQALFGLEDVELEFTPESLKAM 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+ + GAR L++++E +L D + Sbjct: 356 AKKALARKT-----GARGLRSIVEGILLDTMY 382 >gi|254520130|ref|ZP_05132186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium sp. 7_2_43FAA] gi|226913879|gb|EEH99080.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium sp. 7_2_43FAA] Length = 431 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI + LD+Y+IGQ+ AK+++++A+ N ++R + ++L D EL NILL+GPTG G Sbjct: 63 PNEIKNYLDQYVIGQEKAKKSLSVAVYNHYKR--INSNLIDDDIELQKSNILLLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQSA 165 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFLQI 234 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADLL---- 313 NT +ILFI GAF SR P+DLL Sbjct: 235 NTSNILFICGGAFDGVDKIIEKRTEKSSIGFGANITSRHTKDVGKLLKDIMPSDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L+SL+ ILT ++ L+ QY++L + + + LDFT+D++ A+A+ Sbjct: 295 IPEFVGRLPVVVTLESLDNDALVNILTQPKNALVKQYRKLFEIDNVELDFTDDALKAIAN 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E ++ ++ F SD V+I+ + ++ Sbjct: 355 EAIERKT-----GARGLRSIVEEMMTEVMFDIPSDETISKVIINEDCIK 398 >gi|146318491|ref|YP_001198203.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis 05ZYH33] gi|145689297|gb|ABP89803.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis 05ZYH33] Length = 396 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D RDE L NIL++GPTG Sbjct: 63 PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF H +R D ++P Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L L D ILT+ ++ L+ QY+ L+ + + LDF ED++ A+A+ A Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379 >gi|114327970|ref|YP_745127.1| ATP-dependent protease ATP-binding subunit ClpX [Granulibacter bethesdensis CGDNIH1] gi|122327068|sp|Q0BSJ8|CLPX_GRABC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114316144|gb|ABI62204.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Granulibacter bethesdensis CGDNIH1] Length = 420 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D E+ NI+L+GPTG GK Sbjct: 65 TPKEICKVLDDYVIGQAHAKKVLSVAVHNHYKRLAHGQKNNDIEIGKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 177 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 238 DTTNILFICGGAFAGLEKIIGSRGKGGGIGYGAEVRDPDERRTGEILREVEPEDLLRFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ ILT ++ L+ QY L + EG+ L FT+D++ ++A+ Sbjct: 298 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVSLSFTDDALKSVAN 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417 A+ + GAR L++++E +L + ++ + VVI+ E Sbjct: 358 RAIARKT-----GARGLRSILEGILLGTMYDLPGMENVEEVVINGE 398 >gi|303257391|ref|ZP_07343404.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderiales bacterium 1_1_47] gi|302859748|gb|EFL82826.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Burkholderiales bacterium 1_1_47] Length = 441 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPT 62 +P+EI + LD+Y+IGQ+ AK+ +++A+ N ++R + +D + E+ NILL+GPT Sbjct: 92 TPKEIYANLDQYVIGQEQAKKVLSVAVYNHYKRLRSKFIGDDSDEKVEIQKSNILLIGPT 151 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 G GKT +++ LA++ PF + T TE GYVG +VE +I L+ Sbjct: 152 GSGKTLLAQSLAKMLNVPFAIADATTLTEAGYVGEDVENVILKLL 196 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 GI++LDE DKI + I VS EGVQ+ LL LVEG+ + + Sbjct: 209 GIIYLDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVANVPAAGGRKHPQGNNIPV 268 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------L 312 +T +ILFI GAF + AD L Sbjct: 269 DTSNILFICGGAFEGLDKIIRRRTERSGIGFEADVKGADDRSEGEVLRDIEAKDLVRYGL 328 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ ILT+ ++ ++ QY L + EG++L+ D++ A Sbjct: 329 IPELVGRLPVIATLDDLDEEALIRILTEPKNAVLKQYARLFELEGVVLEVEPDALKEAAK 388 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A + GAR L++++E L F Sbjct: 389 MAQERKT-----GARGLRSIIENALLSAMF 413 >gi|229111943|ref|ZP_04241487.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock1-15] gi|228671507|gb|EEL26807.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock1-15] Length = 444 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLMLQD 434 >gi|261346363|ref|ZP_05974007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rustigianii DSM 4541] gi|282565677|gb|EFB71212.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Providencia rustigianii DSM 4541] Length = 425 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 66 TPHEIRQHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDKTSDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESEKATEGELLTQAEPEDLIKF 299 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F E+++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELSEDALIQILKEPKNALTKQYQALFSLEGTELEFREEALVAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E L + + S SD+++ VV+D Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMSDVEK--VVVD 400 >gi|152976887|ref|YP_001376404.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189082483|sp|A7GTF1|CLPX_BACCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|152025639|gb|ABS23409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cytotoxicus NVH 391-98] Length = 419 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PIEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNAEVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379 >gi|146320684|ref|YP_001200395.1| ATP-dependent protease ATP-binding protein ClpX [Streptococcus suis 98HAH33] gi|223932113|ref|ZP_03624117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus suis 89/1591] gi|253751619|ref|YP_003024760.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis SC84] gi|253753521|ref|YP_003026662.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis P1/7] gi|253755654|ref|YP_003028794.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis BM407] gi|302023732|ref|ZP_07248943.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis 05HAS68] gi|330832767|ref|YP_004401592.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis ST3] gi|145691490|gb|ABP91995.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus suis 98HAH33] gi|223899094|gb|EEF65451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus suis 89/1591] gi|251815908|emb|CAZ51522.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis SC84] gi|251818118|emb|CAZ55912.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis BM407] gi|251819767|emb|CAR45665.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus suis P1/7] gi|292558274|gb|ADE31275.1| ClpX, ATPase regulatory subunit [Streptococcus suis GZ1] gi|329306990|gb|AEB81406.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus suis ST3] Length = 408 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D RDE L NIL++GPTG Sbjct: 63 PQELLNILNNYVIGQDRAKRALAVAVYNHYKRINF-QDSRDENDVDLQKSNILMIGPTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 122 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIDRAER 176 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHV 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF H +R D ++P Sbjct: 237 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L L D ILT+ ++ L+ QY+ L+ + + LDF ED++ A+A+ A Sbjct: 297 ELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 357 IERKT-----GARGLRSIIEETMLDVMF 379 >gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061] gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus nematophila ATCC 19061] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTNNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 59/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313 +T ILFI GAF +VS P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRLNVSSGIGFSATVKGESEKATEGQLLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L LN+ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELNEEALIQILQEPKNALTKQYQALFNLEGVELEFRKEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A A+ + GAR L++++E VL D + ++ Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMYDLPSME 391 >gi|224372109|ref|YP_002606481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia profundicola AmH] gi|223588882|gb|ACM92618.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nautilia profundicola AmH] Length = 407 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+ I + LD Y+IGQ+ AK+ +++A+ N ++R A E+ NIL++GPTG GK Sbjct: 59 LTPKAIKAHLDEYVIGQERAKKIISVAVYNHYKRILFGAKSDVEIQKSNILMIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I+R LA+L P + T TE GYVG +VE ++ L+ A Sbjct: 119 TLIARTLAKLLDVPLAIADATSLTEAGYVGEDVENVLLKLIQAA 162 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 172 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSIVNVPPQGGRKHPNQEFIQI 231 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF + P DL +P Sbjct: 232 DTSNILFICGGAFDGLEEIIQKRLEGATVGFLGKTKEKLTKDDIFALVEPEDLVKYGLIP 291 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L + D +LT+ + LI QY+ L K + + L+F ++++A+AD A Sbjct: 292 ELIGRLPVIATLRELGRDDLIRVLTEPKDALIKQYQALFKLDDVELEFEREALEAIADKA 351 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L+ ++E + DI F+ + + ++I Sbjct: 352 IKRGT-----GARGLRAILEEAMVDIMFNLPEYRGYKIII 386 >gi|328882448|emb|CCA55687.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptomyces venezuelae ATCC 10712] Length = 427 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ VR ++ Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408 >gi|291520782|emb|CBK79075.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprococcus catus GD/7] Length = 432 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 1/107 (0%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 FN P EI + LD+Y+IGQ+ AK+ +++A+ N ++R A EL NI++VGPTG Sbjct: 59 FNLLKPVEIKNFLDQYVIGQEQAKKVLSVAVYNHYKRIASNAGNDVELQKSNIIMVGPTG 118 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 119 SGKTLLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 165 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 60/227 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 234 Query: 292 NTDHILFIASGAF----------------------HVSR-------------PAD----- 311 +T +ILFI GAF HV P D Sbjct: 235 DTTNILFICGGAFDGLDKIVESRTGGQSIGFNADIHVKEEEQNVSELMKQALPQDFVKYG 294 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV V L L++ +LT+ +S +I QYK+L + +G+ L+F ++++ +A Sbjct: 295 LIPEFVGRVPVSVSLDLLDEDALVRVLTEPKSAIIKQYKKLFQLDGVDLEFEDEAVHEIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDA 416 + N+ GAR L++++E VL D F+ + + EK ++ A Sbjct: 355 HRSFMRNT-----GARGLRSIVENVLMDTMFTLPSDETVEKCIITKA 396 >gi|196250175|ref|ZP_03148869.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. G11MC16] gi|196210359|gb|EDY05124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. G11MC16] Length = 262 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+++A+A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 13/78 (16%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFHVSRP 309 +T +ILFI GAF P Sbjct: 236 DTTNILFICGGAFDGIEP 253 >gi|291528434|emb|CBK94020.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium rectale M104/1] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P E+ + LD Y+IGQ AK+ +++A+ N ++R L D D EL NIL++GPTG GK Sbjct: 67 TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T +ILFI GAF + P D Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L++L++ IL + +++LI QY +L + +G+ L+FT+D+++A+A Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 D A+ + GAR L+ +ME V+ D+ + SD VID + V Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402 >gi|291525458|emb|CBK91045.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium rectale DSM 17629] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P E+ + LD Y+IGQ AK+ +++A+ N ++R L D D EL NIL++GPTG GK Sbjct: 67 TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T +ILFI GAF + P D Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L++L++ IL + +++LI QY +L + +G+ L+FT+D+++A+A Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 D A+ + GAR L+ +ME V+ D+ + SD VID + V Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402 >gi|253579814|ref|ZP_04857082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848813|gb|EES76775.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 438 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQ AK+A+++A+ N ++R + EL NIL++GPTG GK Sbjct: 66 LKPEEIHAVLDDYVIGQDAAKKALSVAVYNHYKRILASKNSDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LARL PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TLLAQTLARLLNVPFAIADATTLTEAGYVGEDVENILLKIIQAA 169 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 57/212 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 177 QYGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPAD---- 311 I+T +ILFI GAF VS P D Sbjct: 237 QIDTTNILFICGGAFDGIEKIIESRQDTKSIGFGAEVSVKEDRNVGEILKDVMPEDFIKF 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV V L +L+++ IL + +++L QY L + +G+ LDF +D+++ + Sbjct: 297 GLIPEFIGRVPVVVTLDALDENALISILKEPKNSLTKQYHRLFELDGVELDFEDDALELV 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A ++ + GAR L+ +ME L D+ + Sbjct: 357 AKKSLERKT-----GARGLRAIMEGSLMDLMY 383 >gi|238923370|ref|YP_002936886.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale ATCC 33656] gi|259491258|sp|C4ZGF5|CLPX_EUBR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238875045|gb|ACR74752.1| ATP-dependent protease ATP-binding subunit [Eubacterium rectale ATCC 33656] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P E+ + LD Y+IGQ AK+ +++A+ N ++R L D D EL NIL++GPTG GK Sbjct: 67 TPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRV-LAGDTSDVELQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 TLLAQTLARVINVPFAIADATTLTEAGYVGEDVENILLKLIQAA 169 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 58/230 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 HGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTEASVPPQGGRKHPQQELIP 237 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T +ILFI GAF + P D Sbjct: 238 IDTTNILFICGGAFDGLEKIIDSRMDTSSIGFNSDVKSKTELNVGEAFKHALPQDFVKFG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L++L++ IL + +++LI QY +L + +G+ L+FT+D+++A+A Sbjct: 298 LIPEFIGRVPITVSLEALDRDALIRILKEPKNSLIKQYTKLFELDGVGLEFTDDAVNAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 D A+ + GAR L+ +ME V+ D+ + SD VID + V Sbjct: 358 DKALERKT-----GARGLRAIMEAVMLDLMYRIPSDKSISKCVIDKDTVE 402 >gi|228941639|ref|ZP_04104186.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960748|ref|ZP_04122387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967575|ref|ZP_04128601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar sotto str. T04001] gi|228974568|ref|ZP_04135134.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229048189|ref|ZP_04193758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH676] gi|229152674|ref|ZP_04280862.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus m1550] gi|228630820|gb|EEK87461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus m1550] gi|228723176|gb|EEL74552.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH676] gi|228784971|gb|EEM32984.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792154|gb|EEM39730.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar sotto str. T04001] gi|228798964|gb|EEM45939.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar pakistani str. T13001] gi|228817851|gb|EEM63929.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 444 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 89 PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 148 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 149 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 191 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 201 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 260 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 261 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 320 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 321 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 380 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 381 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 434 >gi|289207759|ref|YP_003459825.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thioalkalivibrio sp. K90mix] gi|288943390|gb|ADC71089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thioalkalivibrio sp. K90mix] Length = 425 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PREI LD Y+IGQ AK+ +++A+ N ++R + A D EL NI+L+GPTG GKT Sbjct: 67 PREIREILDDYVIGQTSAKKILSVAVYNHYKRLEARAGKDDVELSKSNIMLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 LLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLL 166 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 60/237 (25%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST--------- 286 ++ EN GIV++DE DK+ + I VS EGVQ+ LL L+EG++ S Sbjct: 173 VEKAEN-GIVYIDEIDKVSRKSDNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHP 231 Query: 287 --KYGSINTDHILFIASGAFH-----VSRPAD---------------------------- 311 ++ ++T +ILFI GAF + + A+ Sbjct: 232 QQEFLQVDTRNILFICGGAFSGLEKIIQQRAEKGGIGFSAELSSKDESKSGGQWLKQLEA 291 Query: 312 -------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 L+PE GR PV+ L L++ ILT ++ L+ QY L + EG+ L+F + Sbjct: 292 DDLVRYGLIPEFVGRLPVQATLDELDEDALITILTQPKNALVKQYARLFEMEGVELEFRD 351 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 D++ A+A A+ + GAR L+T+ME +L D + ++ VVID +R Sbjct: 352 DALAAIAHKAMERKT-----GARGLRTIMENILLDTMYELPSMEGVSKVVIDEAVIR 403 >gi|225551973|ref|ZP_03772913.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp. SV1] gi|225370971|gb|EEH00401.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia sp. SV1] Length = 430 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKESV 397 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|167624685|ref|YP_001674979.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella halifaxensis HAW-EB4] gi|189044151|sp|B0TLU8|CLPX_SHEHH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|167354707|gb|ABZ77320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella halifaxensis HAW-EB4] Length = 425 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +A+A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLRNATPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 64/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGTGIGFGAEVKGEADKKSISDTLLQVEPEDLVKF 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+ IL++ ++ + Q+ L + E + L+F +D++ A+ Sbjct: 300 GLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A L + GAR L++++E +L DI + S D+ + VVID V+ Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTDDVAK--VVIDESVVK 405 >gi|229098946|ref|ZP_04229881.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-29] gi|229117975|ref|ZP_04247335.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock1-3] gi|228665424|gb|EEL20906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock1-3] gi|228684444|gb|EEL38387.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock3-29] Length = 419 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409 >gi|251798424|ref|YP_003013155.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paenibacillus sp. JDR-2] gi|247546050|gb|ACT03069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Paenibacillus sp. JDR-2] Length = 418 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I + LD Y+IGQ+ AK+++++A+ N ++R + + D EL NILLVGPTG GKT Sbjct: 64 PKDIRAILDSYVIGQEFAKKSLSVAVYNHYKRINSQSKIEDVELQKSNILLVGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLESLIKRRIGKKVIGFSSTGEVQKDLKPGEYLSMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL++ ++ L+ QY++L++ + + LDF +++A+A Sbjct: 296 IPEFVGRLPVISTLEPLDEAALMRILSEPKNALVKQYQKLLEMDNVKLDFEPAALEAIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 356 EAIKRNT-----GARGLRAIIEGIMLEVMY 380 >gi|237755490|ref|ZP_04584112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurihydrogenibium yellowstonense SS-5] gi|237692354|gb|EEP61340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurihydrogenibium yellowstonense SS-5] Length = 408 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R ++L D E+ NILL+GPTG Sbjct: 58 TPAEIKAKLDEYVIGQERAKKILSVAVYNHYKRIYQKELFKDKDVEIEKSNILLIGPTGS 117 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 118 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 163 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GIV++DE DKI A+ SG+ ++R EGVQ+ LL ++EG+ +V + G Sbjct: 173 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 231 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 I+T +ILFI GAF + +P DL+ Sbjct: 232 QIDTTNILFILGGAFVGLEDIIKQRIGKKSIGFGADIKSKSEEKDLLSLVQPEDLIKFGL 291 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ +LT+ ++ LI QYK L+ +GI L+FTED++ +A Sbjct: 292 IPEFLGRIPVIATLEELDEDALVRVLTEPKNALIKQYKSLLAIDGIELEFTEDALRKIAR 351 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ ++E ++ D+ + A + + K V+ID + V Sbjct: 352 EAIKRKT-----GARGLRAIIEDLMLDVMYEAPNQKTLKKVIIDKDVV 394 >gi|297194376|ref|ZP_06911774.1| ATP-dependent protease ATP-binding subunit [Streptomyces pristinaespiralis ATCC 25486] gi|197720966|gb|EDY64874.1| ATP-dependent protease ATP-binding subunit [Streptomyces pristinaespiralis ATCC 25486] Length = 429 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDLPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI + VR ++ Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITRDVVRNNV 408 >gi|238759261|ref|ZP_04620428.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia aldovae ATCC 35236] gi|238791432|ref|ZP_04635070.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia intermedia ATCC 29909] gi|238702548|gb|EEP95098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia aldovae ATCC 35236] gi|238729048|gb|EEQ20564.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia intermedia ATCC 29909] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ + GAR L++++E L D + + D EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398 >gi|288920829|ref|ZP_06415127.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EUN1f] gi|288347788|gb|EFC82067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EUN1f] Length = 431 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVGP 61 PREI LD Y++GQ+ AK+ +++A+ N ++R Q A EL NILL+GP Sbjct: 64 PREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGSSSSGDAAKSEVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFHV------SR----------------------------PADLL---- 313 +T ++LFI GAF SR P DLL Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDSSDVFGDIMPEDLLKYGM 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ + +L++ ILT+ ++ L+ QYK L + +G+ LDFT D+++A+AD Sbjct: 302 IPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLLSVMY 386 >gi|88705173|ref|ZP_01102885.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter litoralis KT71] gi|88700868|gb|EAQ97975.1| ATP-dependent Clp protease ATP-binding subunit clpX [Congregibacter litoralis KT71] Length = 375 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD Y+IGQQ AK+ +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 16 PVEINAILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSDDVELGKSNILLVGPTGSGK 75 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 76 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 116 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 129 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 188 Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADL---- 312 +T ILFI GAF H P DL Sbjct: 189 DTSSILFICGGAFAGLDKVIRDRSEKGGIGFGAEVHSKDATRNVGEVLFDLEPEDLVQYG 248 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+ ILT+ +++L QY +L + E + +DF ED + A+A Sbjct: 249 LIPEFVGRLPVIATLEELDVPALVQILTEPKNSLTKQYSKLFEMEDVEIDFREDGLRAVA 308 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ + GAR L++++E VL D +S ++ VV+D +R Sbjct: 309 EKAMERKT-----GARGLRSILEGVLLDTMYSIPSREDVAKVVVDESVIR 353 >gi|238788009|ref|ZP_04631805.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia frederiksenii ATCC 33641] gi|238723957|gb|EEQ15601.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia frederiksenii ATCC 33641] Length = 423 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRINTGSGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ + GAR L++++E L D + + D EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398 >gi|322435044|ref|YP_004217256.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium sp. MP5ACTX9] gi|321162771|gb|ADW68476.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium sp. MP5ACTX9] Length = 428 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+E+ + LD Y+IGQ K+ +A+A+ N ++R Q+ + EL NILLVGPTG GK Sbjct: 69 PQEVRASLDEYVIGQDQTKKKLAVAVYNHYKRIQMNKTRGNDVELAKSNILLVGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF V+ T TE GYVG +VE II L+ A Sbjct: 129 TLLAQTLAKVLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 67/245 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL L+EG+ + ++ ++ Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPHQEFTAV 241 Query: 292 NTDHILFIASGAF-------------------------------------------HVSR 308 +T +ILFI GAF + Sbjct: 242 DTTNILFICGGAFVGLEKVIGRRVGKKALGFKTLTDAEKLDGDVTPIRAQRDAELLRQAE 301 Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DLL PE GR PV L L++ ILT ++ ++ QY +L EG+ + FT Sbjct: 302 PQDLLKYGLIPEFVGRLPVMGVLDELDEVALIEILTKPKNAILKQYIKLFDFEGVKVTFT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422 +D+ +A A+ +GAR L+ ++E ++ D+ + + + K + I AE V+ H Sbjct: 362 DDAAREIAREALQRK-----VGARGLRMILEELMLDLMYYVPGNKKVKELSITAEMVKKH 416 Query: 423 IGDFP 427 P Sbjct: 417 SLTLP 421 >gi|293392544|ref|ZP_06636864.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera DSM 4582] gi|291424946|gb|EFE98155.1| ATP-dependent Clp protease ATP-binding subunit [Serratia odorifera DSM 4582] Length = 437 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 80 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 133 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 134 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 192 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 193 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 252 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 253 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGEAEKATEGELLLQAEPEDLIKF 312 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 313 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALNAI 372 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + + VVID Sbjct: 373 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 413 >gi|229062167|ref|ZP_04199491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH603] gi|228717150|gb|EEL68826.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH603] Length = 419 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409 >gi|163793183|ref|ZP_02187159.1| ATP-dependent protease Clp [alpha proteobacterium BAL199] gi|159181829|gb|EDP66341.1| ATP-dependent protease Clp [alpha proteobacterium BAL199] Length = 424 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I LD Y+IGQ AKR +++A+ N ++R D EL NILL+GPTG GK Sbjct: 68 TPGDICQVLDDYVIGQLKAKRILSVAVHNHYKRLAHGQKNNDVELAKSNILLIGPTGCGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 128 TLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 180 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 181 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 241 DTTNILFICGGAFSGLEKIISNRSRGSSIGFGADVRAPDDRRTGEVLREVEPEDLLKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L + ILT ++ L+ QY+ L + E + L+F +D++ A+A Sbjct: 301 IPEFVGRLPVLATLEDLEEDALVDILTKPKNALVKQYQRLFEMEDVRLEFRDDALRAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A++ + GAR L+++ME +L D + L Sbjct: 361 KAIDRKT-----GARGLRSIMENILLDPMYDLPQL 390 >gi|315221693|ref|ZP_07863609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus anginosus F0211] gi|315189180|gb|EFU22879.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus anginosus F0211] Length = 410 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R + DE L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + ++ L+ QY+ L+ + + L+F +D++ +A+ A Sbjct: 299 ELIGRLPVFAALEPLTVDDLVRILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381 >gi|229019697|ref|ZP_04176504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1273] gi|228741604|gb|EEL91797.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1273] Length = 419 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMF 379 >gi|329934562|ref|ZP_08284603.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces griseoaurantiacus M045] gi|329305384|gb|EGG49240.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces griseoaurantiacus M045] Length = 428 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFQDVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408 >gi|262373454|ref|ZP_06066732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter junii SH205] gi|262311207|gb|EEY92293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter junii SH205] Length = 436 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R Q A E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQTHHAHQDIEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A V ++++ Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKADYDVEKAQK 177 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 160/391 (40%), Gaps = 102/391 (26%) Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151 I + VDV +++V+ S++ E + A+ + I AL +G+ T V Sbjct: 32 ICNECVDVCLDLVQTSQQVEAGDWATKPLPKPHEIRAALDQYVIGQDLAKKTLSVAVYNH 91 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K+L+ G+ DIE+A SN + G G L++ ++++ Sbjct: 92 YKRLKVGQTHHAHQDIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258 P M D + L + V D +V+ GI+++DE DKI + Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305 I VS EGVQ+ LL ++EG+ S ++ I+T +ILFI GAF Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFS 251 Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325 + AD L+PE GR PV Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L L++ ILT+ ++ L QY+ L E + L F E ++ A+A A+ N+ G Sbjct: 312 LDELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFDESALRAVAKKALERNT-----G 366 Query: 386 ARRLQTVMERVLEDISFSASDLQE-KTVVID 415 AR L++++E VL + + ++ TV++D Sbjct: 367 ARGLRSILENVLLETMYDLPSRKDVGTVIVD 397 >gi|253990890|ref|YP_003042246.1| ATP-dependent protease ATP-binding subunit ClpX [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782340|emb|CAQ85504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Photorhabdus asymbiotica] Length = 423 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + D+ + EL NILL+GPTG G Sbjct: 66 TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKRLR-NGDVSNGVELGKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 125 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTSTGIGFGAKVKGESEKATEGELLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRAEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+ V GAR L++++E L D + Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMY 385 >gi|296413162|ref|XP_002836285.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630098|emb|CAZ80476.1| unnamed protein product [Tuber melanosporum] Length = 451 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 24/177 (13%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSS--VSTKY----GSINTDHIL 297 GIV LDEFDKI S G +S EGVQ+ LL ++EG++ ++TK G + D I Sbjct: 222 GIVCLDEFDKIAKPKSPYGSKDISGEGVQQALLKIIEGTTLQINTKPERPGGGLTPDLIS 281 Query: 298 FIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 F L+PEI GR P+ ++SL++ +LT+ + L+ QY EL G Sbjct: 282 F------------GLIPEIVGRIPIIAAVESLDEDMLVRVLTEPRNALLKQYTELFALSG 329 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + L FT ++ +A A+ +N+ GAR L+TVMER+L D F + + V++ Sbjct: 330 VELRFTSPALRQIAKSAIAMNT-----GARGLRTVMERILSDAMFESPGSSIRYVLV 381 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 45/150 (30%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------------------PAD 46 +PR + LDR+++GQ KR ++ A+ + ++R Q P Sbjct: 63 KLTPRALKQHLDRFVVGQNRPKRILSTAIYHHYKRTQQLQQRQEEQDELFRSSQAMGPQS 122 Query: 47 LRDEL--MPK------------------------NILLVGPTGVGKTAISRRLARLAGAP 80 L +E+ P+ N+L +GPTGVGKT + R LAR+ P Sbjct: 123 LDEEISHQPRTVHVPPRGDRASIYDFSPLTIEKSNVLCLGPTGVGKTLMLRTLARVLEVP 182 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + T FT+ GYVG + + I L+ A Sbjct: 183 FSMSDCTPFTQAGYVGEDADVCIHRLLAAA 212 >gi|222151555|ref|YP_002560711.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus caseolyticus JCSC5402] gi|222120680|dbj|BAH18015.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Macrococcus caseolyticus JCSC5402] Length = 421 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P E+++ LD Y+IGQ AK+A+A+A+ N ++R P + D E+ NI L+GPTG GK Sbjct: 65 PHEMMALLDAYVIGQDKAKKALAVAVYNHYKRIFNPLNDEDGVEIQKSNIALIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 125 TLLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 168 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQI 237 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF +P DL +P Sbjct: 238 DTTNILFILGGAFDGIDEVIKRRLGEKVIGFTGIKEQGIDEATLLSQIKPEDLQSYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ L+ + ILT ++ L+ QYK++++ + + L+FT++++ A++++A Sbjct: 298 EFIGRIPVVANLEQLDVGALKNILTQPKNALVKQYKKMLEIDDVTLEFTDEALTAISELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + + GAR L++++E + ++ FS S K V+I E + Sbjct: 358 IERKT-----GARGLRSIIEESMLEVMFSIPSRTDVKKVIITKETIE 399 >gi|194017051|ref|ZP_03055663.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus pumilus ATCC 7061] gi|194010919|gb|EDW20489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus pumilus ATCC 7061] Length = 421 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ++AK+++A+A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ QY ++++ + + L+F ED++ +A Sbjct: 296 PEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEEDALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGA 395 >gi|157693224|ref|YP_001487686.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus pumilus SAFR-032] gi|167008658|sp|A8FFV9|CLPX_BACP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157681982|gb|ABV63126.1| ATP dependent protease ATP-binding subunit [Bacillus pumilus SAFR-032] Length = 421 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ++AK+++A+A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PHEIREILDEYVIGQENAKKSLAVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGAENKIEDLEKEVLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ QY ++++ + + L+F ED++ +A Sbjct: 296 PEFIGRLPVIASLEPLDEKALVEILTKPKNALVKQYTKMLELDDVELEFEEDALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F + D EK V V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGESPRLVLKD 409 >gi|311896030|dbj|BAJ28438.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX [Kitasatospora setae KM-6054] Length = 428 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PREI LD+Y++GQ AK+A+++A+ N ++R Q R EL NILL+G Sbjct: 64 PREIYEFLDQYVVGQDLAKKALSVAVYNHYKRVQAGEAGRSGSGRDDAIELAKSNILLLG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 PTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 183 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312 +T ++LFI GAF H + P DL Sbjct: 243 DTTNVLFIVGGAFAGLERIIEGRAGAKGIGFGATIRSKREVDSADHFRQVMPEDLVKFGM 302 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ ILT+ ++ L+ QY++L + +G+ L+FT D+++A+AD Sbjct: 303 IPEFIGRLPVITSVHNLDREALLQILTEPKNALVKQYRKLFELDGVELEFTRDALEAIAD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A+ L T GAR L+ +ME VL + + Q+ VV+ + V H Sbjct: 363 QAI-LRGT----GARGLRAIMEEVLMSVMYEVPSRQDVARVVVTGDVVSKH 408 >gi|293606139|ref|ZP_06688504.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] gi|292815594|gb|EFF74710.1| ATP-dependent Clp protease ATP-binding subunit [Achromobacter piechaudii ATCC 43553] Length = 432 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 103/390 (26%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+ + V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQNSPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326 V R P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD ++ A+A A+ + GA Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDLRPAALKAIARKALKRKT-----GA 368 Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415 R L++++E+ L D + S K VV+D Sbjct: 369 RGLRSIIEQTLLDTMYELPSQGNVKRVVVD 398 >gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii SS-2004] gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii SS-2004] Length = 423 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKR------LRNGDTNNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313 +T ILFI GAF +VS P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVISQRLNVSSGIGFSATVKGESEKATEGELLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEDALIQILQEPKNALTKQYQALFNLEGAELEFRKEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+ + GAR L++++E VL D + Sbjct: 359 AKKAMARKT-----GARGLRSIVEGVLLDTMY 385 >gi|269102130|ref|ZP_06154827.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium damselae subsp. damselae CIP 102761] gi|268162028|gb|EEZ40524.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Photobacterium damselae subsp. damselae CIP 102761] Length = 392 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 33 TPQEIRHNLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTNSDGVELGKSNILLIGPTGSG 92 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 93 KTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 134 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 147 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 206 Query: 292 NTDHILFIASGAFH--------------------------VSR----------PADL--- 312 +T ILFI GAF SR P DL Sbjct: 207 DTSKILFICGGAFAGLDKVIEQRVATNTGIGFGAEVRSKDESRTLTDLFLQVEPEDLVKF 266 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + EG L+F +D++ A+ Sbjct: 267 GLIPEFIGRLPVTATLTELDEDALVQILREPKNALTKQYGALFELEGAELEFRDDALVAI 326 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + + VVID ++ Sbjct: 327 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSTKGVSKVVIDESVIK 372 >gi|325300152|ref|YP_004260069.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides salanitronis DSM 18170] gi|324319705|gb|ADY37596.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteroides salanitronis DSM 18170] Length = 414 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKLIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIERKIAQRLNTHVVGYGAAKETVNIDRKNLMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 299 PEIIGRLPILTYLNPLDRTALRNILTEPKNSIIKQYIKLFEMDGVKLTFEPEVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L++++E ++ D F + T + +Y + +G Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDTMFEVPSHKIDTFTVTLDYAKEQMG 404 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD+Y+IGQ AKR +++A+ N ++R P D E+ NI++VG TG GKT Sbjct: 67 PKDIKEFLDQYVIGQDSAKRYLSVAVYNHYKRLLQPESKDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ R Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVEEAER 178 >gi|283955698|ref|ZP_06373189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 1336] gi|283792653|gb|EFC31431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 1336] Length = 407 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRYIIGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYIIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394 >gi|322834045|ref|YP_004214072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp. Y9602] gi|321169246|gb|ADW74945.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rahnella sp. Y9602] Length = 424 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRQHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTNTGIGFGAEVKGKEQKATEGQLLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L LN+ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELNEEALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L++ + VVID Sbjct: 359 AKKAM-----IRKTGARGLRSIVEAALLDTMYDLPSLEDVEKVVID 399 >gi|37523765|ref|NP_927142.1| ATP-dependent protease ATP-binding subunit ClpX [Gloeobacter violaceus PCC 7421] gi|46576419|sp|Q7NDN9|CLPX_GLOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|35214770|dbj|BAC92137.1| clpX [Gloeobacter violaceus PCC 7421] Length = 437 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P+EI S LD+++IGQQ+AK+ +++A+ N ++R L + L + E+ NILL+GPTG Sbjct: 79 PQEIKSYLDQHVIGQQEAKKILSVAVYNHYKR--LSSKLEESGDEVEIQKSNILLIGPTG 136 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA L PF + T TE GYVG +VE I+ L+ VA V ++R Sbjct: 137 CGKTLLAQTLADLLDVPFAIADATTLTEAGYVGEDVENILLRLLQVADGEVERAQR 192 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 193 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQEYIQI 252 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILF+ GAF P DL Sbjct: 253 DTANILFVCGGAFVGLERVVEQRIGKRAMGFVQAGEPQKREQRLVESLKALEPDDLVKFG 312 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ L+ L++ ILT+ ++ L+ QY+ L++ +G+ + F D+I +A Sbjct: 313 LIPEFIGRIPMVAVLEPLDEEALIEILTEPKNALLKQYQRLLRMDGVEMVFEPDAIKTIA 372 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ ++ + Sbjct: 373 QEAFRRKT-----GARALRGIVEELMLEVMY 398 >gi|157962501|ref|YP_001502535.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella pealeana ATCC 700345] gi|189044152|sp|A8H613|CLPX_SHEPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157847501|gb|ABV88000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella pealeana ATCC 700345] Length = 425 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +A+A+ N ++R + A +D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDKAKKVLAVAVYNHYKRLR-NASPKDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARVLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 64/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILF+ GAF HV P DL Sbjct: 240 DTSKILFVCGGAFAGLEKVIEQRAHVGTGIGFGAQVKGEADKKTISDTLLEVEPEDLVKF 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+ IL++ ++ + Q+ L + E + L+F +D++ A+ Sbjct: 300 GLIPEFIGRLPVLATLSELDDEALIQILSEPKNAITKQFAALFEMENVELEFRDDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A L + GAR L++++E +L DI + S D+ + VVID V+ Sbjct: 360 A-----LKAQTRKTGARGLRSIVEGILLDIMYDLPSTDDVAK--VVIDESVVK 405 >gi|300741665|ref|ZP_07071686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia dentocariosa M567] gi|300380850|gb|EFJ77412.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia dentocariosa M567] Length = 431 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 59/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG------- 289 +GI+++DE DKI AR G + ++R EGVQ+ LL ++EG+ +V + G Sbjct: 179 QHGIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHPAHT 237 Query: 290 --SINTDHILFIASGAFH------VSR--------------------------PADL--- 312 I T +ILFI +GAF ++R P DL Sbjct: 238 NLEIETSNILFIVAGAFDGLEDRILARTDRTSIGFGAELTAAPDTDQTLSQIMPEDLTHY 297 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV LK L + ILT ++ L+ QYK L +G+ L F +D++ A+ Sbjct: 298 GIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFALDGVELIFEDDALHAV 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A++A + GAR L+++ME +L+ I F D Q+ T VVI + VR Sbjct: 358 AELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVVITEDTVR 403 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRD--ELMPK 54 +PREI S L Y+IGQ AKR +A+A+ N ++R + L A + +L Sbjct: 56 TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIYDLNNPVLHSRTLSATAGESVDLGKS 115 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ LA+ PF V+ T TE GYVG +VE I+ L++ A Sbjct: 116 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAA 171 >gi|289641546|ref|ZP_06473708.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia symbiont of Datisca glomerata] gi|289508641|gb|EFD29578.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia symbiont of Datisca glomerata] Length = 430 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 PREI LD Y++GQ+ AK+ +++A+ N ++R Q D EL NILL+GPTG Sbjct: 64 PREIYEFLDSYVVGQEQAKKILSVAVYNHYKRVQAGGAGGDAKGDVELAKSNILLLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 CGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI GAF + + P DLL Sbjct: 240 DTTNVLFIVGGAFAGLDRIIDARIGKKSLGFRAVLHGKDDPDAAKVFSDVMPEDLLKYGM 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ + +L++ ILT+ ++ L+ QYK+L + +G+ LDFT D++DA+AD Sbjct: 300 IPEFIGRLPMITSVSNLDREALIRILTEPKNALVRQYKKLFELDGVDLDFTADALDAIAD 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLLSVMY 384 >gi|256847017|ref|ZP_05552463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus coleohominis 101-4-CHN] gi|256715681|gb|EEU30656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus coleohominis 101-4-CHN] Length = 416 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGV 64 +P EI+ +LD Y+IGQ +AK+ +++A+ N ++R + D D EL NI ++GPTG Sbjct: 63 TPAEIMKQLDDYVIGQGEAKKTLSVAVYNHYKRVNAMVTGDNNDTELQKSNIAVIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 123 GKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENIILKLLQAA 168 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 60/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQV 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 238 DTKNILFIVGGAFDGIESIVKERLGDKTIGFGTDSKEADQVNEKNILQHVI-PEDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ D ILT+ ++ L+ QY+EL++ +G L FT+ ++ +A Sbjct: 297 LIPEFIGRLPVMTALEKLDEDDLVRILTEPKNALVKQYQELIRLDGSKLRFTDGALREMA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLH 422 +A+ N+ GAR L++++E V+ D+ F Q+ + VVID V H Sbjct: 357 KLAIARNT-----GARGLRSIIEGVMRDVMFDLPSRQDVSEVVIDKNCVEHH 403 >gi|56421187|ref|YP_148505.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus kaustophilus HTA426] gi|261418332|ref|YP_003252014.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus sp. Y412MC61] gi|297529184|ref|YP_003670459.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus sp. C56-T3] gi|319767709|ref|YP_004133210.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus sp. Y412MC52] gi|61211380|sp|Q5KWJ9|CLPX_GEOKA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56381029|dbj|BAD76937.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Geobacillus kaustophilus HTA426] gi|261374789|gb|ACX77532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. Y412MC61] gi|297252436|gb|ADI25882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. C56-T3] gi|317112575|gb|ADU95067.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Geobacillus sp. Y412MC52] Length = 421 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+++A+A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ ++ QY+++++ +G+ L+F E ++ +A Sbjct: 296 PEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E ++ D+ F S D+Q+ + +D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITLD 395 >gi|50120088|ref|YP_049255.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium atrosepticum SCRI1043] gi|61211478|sp|Q6D826|CLPX_ERWCT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49610614|emb|CAG74059.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium atrosepticum SCRI1043] Length = 424 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLL- 313 +T ILFI GAF HV P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSAEKATEGELLSHV-EPGDLIK 297 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A Sbjct: 298 FGLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTA 357 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 +A A+ V GAR L++++E L + + L+ VVID + H Sbjct: 358 IAKKAM-----VRKTGARGLRSIVEAALLETMYDLPSLESVDKVVIDESVIAGH 406 >gi|157369339|ref|YP_001477328.1| ATP-dependent protease ATP-binding subunit ClpX [Serratia proteamaculans 568] gi|167009020|sp|A8GAR0|CLPX_SERP5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157321103|gb|ABV40200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Serratia proteamaculans 568] Length = 423 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E++++A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + + VVID Sbjct: 359 ARKAMKRKT-----GARGLRSIVEGALLDTMYDLPSMDSVDKVVID 399 >gi|322379412|ref|ZP_08053782.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1] gi|322380886|ref|ZP_08054965.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5] gi|321146690|gb|EFX41511.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS5] gi|321148121|gb|EFX42651.1| ATP-dependent protease ATP-binding subunit [Helicobacter suis HS1] Length = 434 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI I VS EGVQ+ LL ++EG+ +VS K G I Sbjct: 196 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQI 255 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T +ILFI GAF H+ P DL+ P Sbjct: 256 DTTNILFICGGAFDGIIDVIKRRIHSNVLGFGNEKKTKEELEDILHLVEPEDLISYGLIP 315 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV LK ++K IL ++ LI QY+ L K +G+ L F E++++ +A++A Sbjct: 316 ELIGRLPVISTLKPISKEAMVDILQKPKNALIKQYQALFKMDGVELIFEEEAVEEIANLA 375 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + +GAR L+ ++E DI F +L++ V+I E V Sbjct: 376 IKRK-----VGARGLRAIIESFGLDIMFDLPNLKDYQVIITKECV 415 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 23/220 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGP 61 SP+ + LD Y+IGQ+DAKR +++A+ N ++R + RD E+ NILLVGP Sbjct: 79 SPKLLKEALDHYVIGQEDAKRVLSVAVYNHYKRLHY-QETRDSNTQEVEISKSNILLVGP 137 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-- 119 TG GKT +++ LAR P + T TE GYVG +VE I+ L+ + V +++ Sbjct: 138 TGSGKTLMAQTLARFLNVPIAISDATSLTEAGYVGEDVENILTRLLQASDGDVERAQKGI 197 Query: 120 ---DEVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISDKEIDIEVAD 171 DE+ + A ++ I + G+ ++ + + G E +++ D Sbjct: 198 VFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGAVVNVSPKGGRKHPNENFVQI-D 256 Query: 172 TSSDISNFDIPGGASVGILNLSE--LFSKVMGSGRKKKIR 209 T++ + I GGA GI+++ + + S V+G G +KK + Sbjct: 257 TTNILF---ICGGAFDGIIDVIKRRIHSNVLGFGNEKKTK 293 >gi|319760382|ref|YP_004124320.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039096|gb|ADV33646.1| ATP-dependent Clp protease, ATP-binding subunit [Candidatus Blochmannia vafer str. BVAF] Length = 431 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 14/115 (12%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELM 52 F+PR+I + LD YIIGQ+ AK+ +++A+ N ++R + D EL Sbjct: 68 FTPRDIGNYLDSYIIGQECAKKILSVAIYNHYKRLKYQNQKFDKNANKINDNYGGDIELF 127 Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILLVGPTG GKT ++ LAR PF + T TE GYVG +VE +I+ L+ Sbjct: 128 KSNILLVGPTGSGKTLLAETLARFLEVPFAISDATTLTEAGYVGEDVENVIQKLL 182 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ K G + Sbjct: 195 GIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTIASIPPKGGRKHPQQEFIKL 254 Query: 292 NTDHILFIASGAF-------------------HV-----------------SRPADLL-- 313 +T +ILFI G+F H P DL+ Sbjct: 255 DTTNILFICGGSFFGLNKIIEQRISEKRTIGFHTFPRMKVNKDFEYALLDKVEPEDLIKF 314 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFP+ L L + + ILTD ++ LI QYK L + I L+F+E S++A+ Sbjct: 315 GLIPEFIGRFPIISVLDELKEYELIKILTDPKNALIKQYKTLFNLDKIELEFSEASLNAI 374 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A A+N S GAR L+T++E +L D ++ S + + VVI+++ V Sbjct: 375 AKYAINKQS-----GARGLRTILENILLDTMYNLPSQNKVRKVVINSQVV 419 >gi|21672725|ref|NP_660792.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008300|sp|Q8K989|CLPX_BUCAP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21623369|gb|AAM68003.1| ATP-dependent Clp protease ATP-binding subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 427 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVG 60 L++ +P EI LD Y+IGQ K+ +++A+ N ++R + + +D EL NILL+G Sbjct: 62 LSYLPTPHEIKKHLDNYVIGQNHTKKVLSVAVYNHYQRIRNVSKNKDNVELGKSNILLIG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 122 PTGSGKTLLAETLAKLLNVPFSIADATTLTEAGYVGEDVENVIQKLL 168 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 60/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 NT +ILFI +GAF +S+ D Sbjct: 241 NTANILFICAGAFSELSKIISKRIDTGNTIGFNCNLKKQKKKKSEQYFLQQVQSKDLIKF 300 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ LK LN++ IL ++ LI QY+ L E + L+FT++++ ++ Sbjct: 301 GLIPEFIGRLPIITILKELNETALVQILCKPKNALIKQYQTLFNLEKVKLEFTKEAVTSI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A A++ + GAR L++++E +L DI + ++ + ++ID V H Sbjct: 361 AKKALSKKT-----GARGLRSIIENILLDIMYELPSMKNVEKILIDESVVNSH 408 >gi|332664755|ref|YP_004447543.1| ATP-dependent Clp protease ATP-binding subunit clpX [Haliscomenobacter hydrossis DSM 1100] gi|332333569|gb|AEE50670.1| ATP-dependent Clp protease ATP-binding subunit clpX [Haliscomenobacter hydrossis DSM 1100] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ K + Sbjct: 189 GIVYIDEIDKIARKGDNPSITRDVSGEGVQQALLKMLEGTDVNVPPQGGRKHPEQKLVKV 248 Query: 292 NTDHILFIASGAFH-----VSRPAD--------------------------------LLP 314 NT++ILFI GAF ++R + L+P Sbjct: 249 NTENILFICGGAFDGIEKIIARRVNTQVIGFKASEKERIDRDNLLQYITHQDLKGFGLIP 308 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV +L L+ + IL++ ++L+ QY++L + EGI L F +D+I+ +A A Sbjct: 309 ELIGRLPVLTYLDPLDLPTLKRILSEPRNSLLRQYQKLFELEGIELSFADDAIEFIATKA 368 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418 + N +GAR L+++ E ++ D F + + ++IDA+Y Sbjct: 369 LEFN-----LGARGLRSICEAIMTDAMFELPSTPDVRKLMIDADY 408 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 6/112 (5%) Query: 3 LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILL 58 FN +P++I LD+Y+IGQ DAK+ +++A+ N ++R Q + D+ E+ NI+L Sbjct: 70 FQFNPAITPKDIKVHLDQYVIGQDDAKKFLSVAVYNHYKRLGQHISDDV--EIEKSNIVL 127 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VG TG GKT +++ +A+ PF V+ T FTE GYVG +VE I+ L+ V Sbjct: 128 VGRTGTGKTLLAKTIAKYLNVPFAIVDATVFTEAGYVGEDVESILSRLLQVC 179 >gi|293391573|ref|ZP_06635907.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952107|gb|EFE02226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D7S-1] Length = 410 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 61 TPHQIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ L+ Sbjct: 121 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 161 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G I Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 233 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 234 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 293 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ L QY+ L E + L+FT +++ A+ Sbjct: 294 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAM 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ K VV++ Sbjct: 354 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVN 394 >gi|253996689|ref|YP_003048753.1| ATP-dependent protease ATP-binding subunit ClpX [Methylotenera mobilis JLW8] gi|253983368|gb|ACT48226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylotenera mobilis JLW8] Length = 426 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 6/106 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDE--LMPKNILLVGP 61 +P+EI LD+Y+IGQ AK+ +A+A+ N ++R +DE + NILL+GP Sbjct: 65 TPQEICKILDQYVIGQTQAKKNLAVAVYNHYKRLGHNNLANGGQKDEVEIAKSNILLIGP 124 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT +++ LARL PF+ + T TE GYVG +VE I++ L+ Sbjct: 125 TGSGKTLLAQTLARLLDVPFVMADATTLTEAGYVGEDVENIMQKLL 170 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 108/237 (45%), Gaps = 62/237 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFVQL 242 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T +ILFI GAF V AD Sbjct: 243 DTTNILFICGGAFDGLEKVIRLRSEKGGIGFGAEVKSKADVREVGAVLRDVEPEDLIKFG 302 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+SL+++ ILT+ ++ L QY +L K EG+ L+F E ++ +A Sbjct: 303 LIPEFIGRLPVVATLESLDEAALMTILTEPKNALTKQYIKLFKMEGVDLEFRESALLLIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 A+ + GAR L+++ME L ++ + L+ VVID +R GD P Sbjct: 363 KKALERKT-----GARGLRSIMEHSLLEVMYELPSLKNLSKVVIDDGVIR---GDSP 411 >gi|257865954|ref|ZP_05645607.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC30] gi|257872287|ref|ZP_05651940.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC10] gi|257875581|ref|ZP_05655234.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC20] gi|257799888|gb|EEV28940.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC30] gi|257806451|gb|EEV35273.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC10] gi|257809747|gb|EEV38567.1| ATP-dependent protease ATP-binding subunit [Enterococcus casseliflavus EC20] Length = 417 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+E+++ L+ Y+IGQ AKR +A+A+ N ++R + D EL NI L+GPTG GKT Sbjct: 67 PQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 127 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 169 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 57/235 (24%) Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289 +++M E GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 172 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 230 Query: 290 ------SINTDHILFIASGAFHVSR--------------------------------PAD 311 I+T +ILFI GAF P D Sbjct: 231 PHQEMIQIDTTNILFIVGGAFDGIETIVKNRLGEKTIGFGTNNKRLEEGESVMQQIIPED 290 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 LL PE GR PV L+ L D ILT+ ++ L+ QY++LM + L+F ++ Sbjct: 291 LLKFGLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTELEFEPEA 350 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + A+A A+ N+ GAR L++++E ++ D+ F+ SD + V I E + Sbjct: 351 LRAIAAQAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIQKVTITEEAAK 400 >gi|119774362|ref|YP_927102.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella amazonensis SB2B] gi|166215200|sp|A1S4X6|CLPX_SHEAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119766862|gb|ABL99432.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella amazonensis SB2B] Length = 425 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 66 TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLR-NAGPKDGVELGKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 239 DTSKILFICGGAFAGLEKVIEQRTHTGSGIGFGAQVKGKEEKESMSDILSQVEPEDLVKY 298 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL++ ++ L QY L + E + L+F ED++ A+ Sbjct: 299 GLIPEFIGRLPVVATLAELDEDALIQILSEPKNALTKQYAALFEMENVELEFREDALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 359 AQKAMSRKT-----GARGLRSIVEGILLDTMY 385 >gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRQHLDDYVIGQETAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTSTGIGFSAKVKGESEKATEGELLAQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRSEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ V GAR L++++E L D + ++ VV+D V Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMYDLPSMENVGKVVVDESVV 403 >gi|253687444|ref|YP_003016634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491264|sp|C6DB56|CLPX_PECCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|251754022|gb|ACT12098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L+ VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVID 399 >gi|228478308|ref|ZP_04062916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus salivarius SK126] gi|228249987|gb|EEK09257.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus salivarius SK126] Length = 408 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+E++ L+ Y++GQ AKRA+A+A+ N ++R D +L NIL++GPTG G Sbjct: 63 PKELLDILNNYVVGQDRAKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D+++A+A A Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIATKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F ++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390 >gi|187478000|ref|YP_786024.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella avium 197N] gi|123515222|sp|Q2L255|CLPX_BORA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115422586|emb|CAJ49111.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella avium 197N] Length = 432 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 4/103 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI S LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPVEIKSFLDQYVIGQTGPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 99/398 (24%), Positives = 168/398 (42%), Gaps = 111/398 (27%) Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAE-------ERILDA-LVGKTATSNTREV--- 150 I + +D+ +I+RE + R A+I +E + LD ++G+T V Sbjct: 36 ICDECIDLCNDIIREEAQATAR--AAIRSELPTPVEIKSFLDQYVIGQTGPKRMLAVAVY 93 Query: 151 -FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIR 209 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 94 NHYKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN-------- 138 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIV 256 P +M D + L + V D +++ NY I+++DE DKI Sbjct: 139 ------VPFVMADAT-TLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKIS 191 Query: 257 ARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGA 303 + I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GA Sbjct: 192 RKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGA 251 Query: 304 FH----------------------------------VSRPADLL-----PEIQGRFPVRV 324 F + P DL+ PE+ GR PV Sbjct: 252 FDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFGEAEPEDLIKFGLIPELVGRLPVVA 311 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L L+++ ILT+ ++ LI Q+++L E LD D++ A+A A+ + Sbjct: 312 TLDELDEAALVQILTEPKNALIKQFQKLFAMESAELDIRPDALHAIARKALQRKT----- 366 Query: 385 GARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 GAR L++++E L D + +A ++ + VV+DA + Sbjct: 367 GARGLRSILESALLDTMYDLPTAGNI--RRVVVDANVI 402 >gi|239623657|ref|ZP_04666688.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521688|gb|EEQ61554.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 439 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 66/104 (63%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ +AK+ +++A+ N ++R ++ ++ NIL+VGPTG GK Sbjct: 68 LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTSCQNMDVDVQKSNILMVGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQSA 171 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 180 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 239 Query: 291 INTDHILFIASGAF---------HVS-------------------------RPADL---- 312 I+T +ILFI GAF +S P DL Sbjct: 240 IDTTNILFICGGAFDGLEKIVEQRISAGSIGFNAEVVNKNDNDIDDLLRKVEPKDLTKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L+SL K IL++ ++ L QY++L + + + L+FT +++D +A Sbjct: 300 LIPEFIGRVPVMVSLQSLTKDAMVRILSEPKNALTRQYQKLFELDNVKLEFTREALDEIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV+ IGAR L++++E V+ D+ + Sbjct: 360 QLAVDRK-----IGARGLRSILETVMMDLMY 385 >gi|160947716|ref|ZP_02094883.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270] gi|158446850|gb|EDP23845.1| hypothetical protein PEPMIC_01651 [Parvimonas micra ATCC 33270] Length = 414 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 64/103 (62%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P EI LD YII Q +AK+A+++A+ N ++R + E+ NILLVGPTG GKT Sbjct: 65 TPVEIKKILDEYIIQQDNAKKALSVAVYNHYKRINRDVESEVEIQKSNILLVGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE II LV A Sbjct: 125 LLAQTLAKVLDVPFAIADATTLTEAGYVGEDVENIILKLVQAA 167 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 57/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S+V K Y + Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQSLLKIIEGTVSNVPPKGGRKHPDQQYIQV 236 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI GAF RP DLL Sbjct: 237 DTTNILFIVGGAFQGIESILKARLEKKSMGFGADVKTDKLDDFSEIIKNLRPEDLLKYGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SLN++ IL + ++ LI QYKEL+ + I L+F +D+I +A Sbjct: 297 IPEFVGRIPMIVTLESLNENSLIRILEEPKNALIKQYKELLSMDNIELEFEKDAIKEIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+ + GAR L+ V+E L D F+ Sbjct: 357 IALERKT-----GARGLRAVIESALLDTMFT 382 >gi|86739914|ref|YP_480314.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. CcI3] gi|123751353|sp|Q2JDQ7|CLPX_FRASC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86566776|gb|ABD10585.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Frankia sp. CcI3] Length = 428 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 PREI LD Y++GQ+ AK+ +++A+ N ++R Q D EL NILL+GPT Sbjct: 64 PREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSSGDGSKGEVELAKSNILLLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T ++LFI GAF SR P DLL Sbjct: 241 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDGSDVFGDIMPEDLLKYGM 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ ILT+ ++ L+ QYK L + + + LDFT D+++A+AD Sbjct: 301 IPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VV+ E V H+ Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLSVMYDIPSRKDVARVVVTREVVLEHV 407 >gi|312134618|ref|YP_004001956.1| ATP-dependent clp protease, ATP-binding subunit clpx [Caldicellulosiruptor owensensis OL] gi|311774669|gb|ADQ04156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Caldicellulosiruptor owensensis OL] Length = 433 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAFH-------------------------------VSR---PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 237 DTTNILFICGGAFEGIEKIIEKRIGEKTLGFNAKIESKKEKKIGDILRQIMPQDLLKFGM 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L+K ILT+ ++ L+ QY++L +G+ L+F +++++A+AD Sbjct: 297 IPEFIGRVPIIVTLDALDKEALIKILTEPKNALVKQYQKLFAMDGVELEFEKEALEAIAD 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ N+ GAR L+ +ME ++ D+ F ++D EK ++ A ++ Sbjct: 357 KAIERNT-----GARGLRAIMEEIMLDVMFEIPSNDKIEKVIITKAAVLK 401 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI LD+Y++GQ AK+ +++A+ N ++R +D EL NIL++GPTG G Sbjct: 63 TPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIYYHDTKKDDVELQKSNILMLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLRLIQNA 167 >gi|119945202|ref|YP_942882.1| ATP-dependent protease ATP-binding subunit [Psychromonas ingrahamii 37] gi|229484080|sp|A1SUW8|CLPX_PSYIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119863806|gb|ABM03283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Psychromonas ingrahamii 37] Length = 425 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ AK+ +++A+ N ++R + A + D EL NILL+GPTG G Sbjct: 66 TPHEIRDNLDDYVIGQDTAKKVLSVAVYNHYKRLKHGA-ISDGVELSKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ +ARL PF + T TE GYVG +VE II+ L+ Sbjct: 125 KTLLAETMARLLDVPFAMADATTLTEAGYVGEDVENIIQKLL 166 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 60/228 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYG 289 +GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ Sbjct: 177 QHGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQEFI 236 Query: 290 SINTDHILFIASGAFH------------------------------VSR------PADLL 313 ++T ILFI GAF +S P DL+ Sbjct: 237 QVDTSKILFICGGAFSGLDSVIEQRVDTGTGIGFGATVRDKDSKATISETFQKVLPQDLI 296 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L++ ILT ++ + QY L E + L+F E+++ Sbjct: 297 KYGLIPEFIGRLPVVATLTELDEHALVEILTAPKNAITKQYAALFGLENVELEFRENALI 356 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+A A+ + GAR L++++E VL D + ++ VVID Sbjct: 357 AMAQKAMGRKT-----GARGLRSIVEEVLLDTMYDLPSVKNVSKVVID 399 >gi|29840676|ref|NP_829782.1| ATP-dependent protease ATP-binding subunit [Chlamydophila caviae GPIC] gi|33300937|sp|Q821L9|CLPX_CHLCV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29835026|gb|AAP05660.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila caviae GPIC] Length = 421 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D+Y++GQ+ AK+ +A+A+ N ++R + L + N+LL+GPTG G Sbjct: 68 LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAADYNVARAER 181 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG++ + +Y Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQEDRDHLLTKVETEDLIAF 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + ++ QY EL E + L F +D++ A+ Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEENVKLIFEKDALYAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386 >gi|332283983|ref|YP_004415894.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp. T7-7] gi|330427936|gb|AEC19270.1| ATP-dependent protease ATP-binding subunit ClpX [Pusillimonas sp. T7-7] Length = 435 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI S LD Y+IGQ KR +A+A+ N ++R + D EL NILL+GPTG G Sbjct: 66 TPEEIKSFLDGYVIGQDTPKRTLAVAVYNHYKRIRYGEIKGDDVELSKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LAR+ PF+ + T TE GYVG +VE I++ L+ Sbjct: 126 KTLLAQTLARMLDVPFVMADATTLTEAGYVGEDVENIVQKLL 167 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 I+++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 AIIYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQV 239 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313 +T +ILFI GAF V R P DL+ Sbjct: 240 DTTNILFIVGGAFDGLDKVIRDRTERSGIGFSASVRAKAERGVGELFAEVEPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L+ L + ILT+ ++LI Q+++L + E + LD ++ A+A Sbjct: 300 IPELVGRLPVLATLEELQEDTLVRILTEPRNSLIKQFQKLFEMEEVELDVRPGALTAIAQ 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+ L Sbjct: 360 RAIKRRT-----GARGLRSIVEQAL 379 >gi|30022560|ref|NP_834191.1| ATP-dependent protease ATP-binding subunit [Bacillus cereus ATCC 14579] gi|206969732|ref|ZP_03230686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus AH1134] gi|218232453|ref|YP_002369279.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus cereus B4264] gi|218899640|ref|YP_002448051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus G9842] gi|228903001|ref|ZP_04067141.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis IBL 4222] gi|228910307|ref|ZP_04074124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis IBL 200] gi|228923225|ref|ZP_04086515.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954755|ref|ZP_04116777.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228981163|ref|ZP_04141463.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis Bt407] gi|229071981|ref|ZP_04205191.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus F65185] gi|229081738|ref|ZP_04214231.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock4-2] gi|229129764|ref|ZP_04258731.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-Cer4] gi|229147042|ref|ZP_04275402.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST24] gi|229180748|ref|ZP_04308086.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus 172560W] gi|229192684|ref|ZP_04319643.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus ATCC 10876] gi|296504963|ref|YP_003666663.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis BMB171] gi|46576498|sp|Q817Q2|CLPX_BACCR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706577|sp|B7IIY3|CLPX_BACC2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706578|sp|B7HEA4|CLPX_BACC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29898118|gb|AAP11392.1| ATP-dependent clp protease ATP-binding subunit clpX [Bacillus cereus ATCC 14579] gi|206735420|gb|EDZ52588.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus AH1134] gi|218160410|gb|ACK60402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus B4264] gi|218542659|gb|ACK95053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cereus G9842] gi|228590774|gb|EEK48634.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus ATCC 10876] gi|228602726|gb|EEK60209.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus 172560W] gi|228636430|gb|EEK92900.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-ST24] gi|228653680|gb|EEL09551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus BDRD-Cer4] gi|228701583|gb|EEL54076.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus Rock4-2] gi|228711140|gb|EEL63105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus F65185] gi|228778363|gb|EEM26630.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis Bt407] gi|228804953|gb|EEM51550.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836431|gb|EEM81782.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849367|gb|EEM94204.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis IBL 200] gi|228856677|gb|EEN01197.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis IBL 4222] gi|296326015|gb|ADH08943.1| ATP-dependent protease ATP-binding protein [Bacillus thuringiensis BMB171] gi|326942251|gb|AEA18147.1| ATP-dependent protease ATP-binding subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 419 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409 >gi|297182366|gb|ADI18532.1| ATP-dependent protease clp, ATPase subunit [uncultured SAR406 cluster bacterium HF4000_22B16] Length = 380 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IG ++ K++VA+A+ N ++R D+ D EL NIL++GPTG GK Sbjct: 32 PSEIKEYLDQYVIGHEETKKSVAVAVHNHYKRI-FYNDVDDGVELEKSNILMIGPTGTGK 90 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I++ LAR PF + T TE GYVG +VE I+ L+ VA Sbjct: 91 TLIAQTLARYLSVPFAIADATSLTEAGYVGEDVENILVRLLQVA 134 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 57/238 (23%) Query: 222 DESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLV 279 D + L+ + V SI E GIV++DE DKI + + I VS EGVQ+ +L ++ Sbjct: 122 DVENILVRLLQVANYSINSAEQ-GIVYIDEIDKIGRKSLSSSITRDVSGEGVQQAILKIL 180 Query: 280 EGS--SVSTKYG---------SINTDHILFIASGAFH----------------------- 305 EG+ +V K G +NT +ILFI G+F Sbjct: 181 EGTIANVPPKGGRKHPEQSLIPVNTKNILFICGGSFESLEGIIARRVGKTEIGFGGSRKR 240 Query: 306 ----------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 + +P DL+ PE+ GR PV L SL+ S+ +L +++L+ QY+ Sbjct: 241 QLAESQGILSLIKPQDLIEFGYIPELIGRLPVLTTLDSLSVSELYEVLISPKNSLVKQYQ 300 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 +L + EGI L+F+ED++ A+ A + GAR L++V+E+ + DI + +++ Sbjct: 301 KLFRMEGIELEFSEDALKAVISKAYEHQA-----GARGLRSVLEKAMMDIMYHIPEME 353 >gi|311113764|ref|YP_003984986.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa ATCC 17931] gi|310945258|gb|ADP41552.1| ATP-dependent Clp protease ATP-binding subunit [Rothia dentocariosa ATCC 17931] Length = 451 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 59/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG------- 289 +GI+++DE DKI AR G + ++R EGVQ+ LL ++EG+ +V + G Sbjct: 199 QHGIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTLATVPPEGGRKHPAHT 257 Query: 290 --SINTDHILFIASGAFH------VSR--------------------------PADL--- 312 I T +ILFI +GAF ++R P DL Sbjct: 258 NLEIETSNILFIVAGAFDGLEDRILARTDRTSIGFGAELTAAPDTDQTLSQIMPEDLTHY 317 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV LK L + ILT ++ L+ QYK L +G+ L F +D++ A+ Sbjct: 318 GIIPELIGRLPVISTLKELTTEELEQILTKPKNALLKQYKHLFALDGVELIFEDDALHAV 377 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A++A + GAR L+++ME +L+ I F D Q+ T VVI + VR Sbjct: 378 AELAETRKT-----GARGLRSMMEGILQPIMFEVPDRQDVTSVVITEDTVR 423 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRD--ELMPK 54 +PREI S L Y+IGQ AKR +A+A+ N ++R + L A + +L Sbjct: 76 TPREIYSYLHDYVIGQDSAKRTLAVAVYNHYKRIHDLNNPVLHSRTLSATAGESVDLGKS 135 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ LA+ PF V+ T TE GYVG +VE I+ L++ A Sbjct: 136 NILMIGPTGSGKTYLAQSLAKKLDVPFAIVDATTLTEAGYVGDDVENILLRLINAA 191 >gi|330829917|ref|YP_004392869.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas veronii B565] gi|328805053|gb|AEB50252.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aeromonas veronii B565] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ+ AK+ +A+A+ N ++R + + EL NILL+GPTG GK Sbjct: 66 TPHQIRAHLDDYVIGQEYAKKVLAVAVYNHYKRLRNSGENSGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRSVKGTGIGFGAEVKSKDAKATLSETFAKVEPEDLIKY 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++S IL + ++ L QY L EG+ L+F +D+++A+ Sbjct: 299 GLIPEFIGRLPVVATLTELDESALIQILKEPKNALTKQYAALFDLEGVELEFRDDALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + L+ VVID ++ Sbjct: 359 ARKAMERKT-----GARGLRSIVEAVLLDTMYDLPSLEGVSKVVIDETVIK 404 >gi|254994794|ref|ZP_05276984.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma marginale str. Mississippi] Length = 404 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63 F+ P EI LD Y+IGQ+ +K+ +++A+ N ++R + + + E+ N+LL+GPTG Sbjct: 56 FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 57/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231 Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313 NTD+ILFI GAF +V + AD L+ Sbjct: 232 NTDNILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLVKFGLI 291 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ IL + +++L+ QY +L + + + L F ++ A+A Sbjct: 292 PEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKK 351 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV N+ GAR L +ME +L D F+ + VV+DA V Sbjct: 352 AVARNT-----GARGL-PIMESLLLDFMFNPLGCEGGKVVVDAAMV 391 >gi|295838902|ref|ZP_06825835.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. SPB74] gi|197695454|gb|EDY42387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. SPB74] Length = 428 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q P+ D EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPSGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312 +T ++LFI GAF H+ P DL Sbjct: 242 DTTNVLFIVGGAFSGLERIIEARAGAKGIGFGATIRSKREIESSDHLREVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + SL++ IL + L+ QY+ L + +G+ L+F ++++A+AD Sbjct: 302 IPEFIGRLPVVTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + Q+ VVI A+ VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNV 408 >gi|138896218|ref|YP_001126671.1| ATP-dependent protease ATP-binding subunit ClpX [Geobacillus thermodenitrificans NG80-2] gi|166214777|sp|A4IRH2|CLPX_GEOTN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|134267731|gb|ABO67926.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus thermodenitrificans NG80-2] Length = 421 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ +AK+++A+A+ N ++R + + D EL NIL++GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQADVDEKNLLSKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ ++ QYK++++ +G+ L+F E ++ +A Sbjct: 296 PEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E ++ D+ F S D+Q+ + +D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITVD 395 >gi|293115723|ref|ZP_05792771.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio crossotus DSM 2876] gi|292808606|gb|EFF67811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio crossotus DSM 2876] Length = 468 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 69/112 (61%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P EI ++LD Y++GQ+ AK+ +++A+ N ++R D E+ N+L++GPTG GKT Sbjct: 116 APHEIKAKLDEYVVGQEHAKKVMSVAVYNHYKRVATSNDQSVEIQKSNMLMIGPTGSGKT 175 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LA++ P + T TE GY+G ++E ++ L+ A N V ++ R Sbjct: 176 YLVQTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 227 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + VS E VQ+ LL ++EGS+V G +INT Sbjct: 228 GIIFIDEIDKIAKKKETRSRDVSGESVQQGLLRILEGSNVDVPVGANSKNAMVPLTTINT 287 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 288 KNILFICGGAFPDLADIIKERLNKQAAIGFTADLRDKYDNDPDILDKVTMEDLRNFGMIP 347 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV LK L++ IL + ++ +I QY++L++ + + L F ++++ A+A A Sbjct: 348 EFLGRLPVVFALKELDEDMLVRILKEPKNAIIKQYEKLLELDEVKLMFNDEALRAIAAKA 407 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + + GAR L++++E + DI + D +V I EY+ Sbjct: 408 IEKKT-----GARALRSIIEEFMLDIMYEIPKDKNIGSVTITKEYI 448 >gi|149177956|ref|ZP_01856553.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM 8797] gi|148843149|gb|EDL57515.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM 8797] Length = 428 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 6/107 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +PREIV+ L+ Y+IGQ+ AK+ +A+A+ N ++R ++ +D+ EL NILL+GPTG Sbjct: 75 TPREIVTHLNDYVIGQERAKKVMAVAVHNHYKRLMHSEEEGSDV--ELDKSNILLIGPTG 132 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 133 SGKTLLAKSLARYLQVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 179 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 60/240 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+F+DE DKI I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 189 GILFIDEIDKIGKTSQNVSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPEQQYIQL 248 Query: 292 NTDHILFIASGAF---------HVSRPA-------------------------------- 310 +T +ILFI G F + R Sbjct: 249 DTSNILFICGGTFVGLEDIVGKRLGRKTIGFGQNNQQKKVQERSKNDLLAQASVDDVLEF 308 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE+ GR PV L L + D +LT+ +++L+ Q+++ + E L+FT+ ++ + Sbjct: 309 GLIPELLGRLPVLSSLSQLGEGDLVRVLTEPKNSLVRQFQKFFEMEKAELEFTDGALHEI 368 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSE 429 A +A N+ GAR L++V+E+ + DI + + + K V+ E ++ FPS+ Sbjct: 369 ARIAQKKNT-----GARGLRSVIEQAMFDIMYELPEQEAGKKYVVTPEIIQGTEQLFPSD 423 >gi|158321198|ref|YP_001513705.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus oremlandii OhILAs] gi|229889849|sp|A8MIS7|CLPX_ALKOO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158141397|gb|ABW19709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus oremlandii OhILAs] Length = 426 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 4/105 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD+Y+IGQ+ AK+A+A+A+ N ++R + D++ EL NIL++GPTG G Sbjct: 63 PSEIKDILDQYVIGQEKAKKALAVAVYNHYKRINV-EDVKSGDVELQKSNILMLGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF +P DLL Sbjct: 236 DTTNILFIVGGAFDGIDSIIQKRTSKKSMGFGAEIESKQVLDLGSLLKQIQPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L+ L++ ILT+ ++ L QYK L + +G+ L+ E+++ +A Sbjct: 296 IPEFVGRLPVVVTLEQLDEEALIKILTEPKNALTKQYKRLFEIDGVHLEIEEEALRLIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E ++ D + S D+++ V+I AE + Sbjct: 356 KAIERKT-----GARGLRGIVEGIMMDTMYEIPSRDDIEK--VIITAEAI 398 >gi|317139982|ref|XP_001817891.2| ATP-dependent Clp protease [Aspergillus oryzae RIB40] Length = 613 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 114/493 (23%), Positives = 188/493 (38%), Gaps = 124/493 (25%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 86 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145 Query: 43 -----LPADLRDELMP----------------------KNILLVGPTGVGKTAISRRLAR 75 P R P NILL+GP+GVGKT +++ LA+ Sbjct: 146 PVEDEFPGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAK 205 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINA 130 + PF + T FT+ GY+G + E + L+ A V ++ R DEV + A+ Sbjct: 206 VLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKV 265 Query: 131 E-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG 183 E + AL+ K T +V K+ ++ + + ++S + N P Sbjct: 266 SHGKDVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPP 322 Query: 184 GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVEN 243 G+ E+++ R I + L + + MD + R SI Sbjct: 323 SNGGGMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVMDRISRGSIG---- 367 Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVSTKYGSINTDHILFI 299 F + V S + R G +P+V GS Y H+ F Sbjct: 368 --------FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEALY----KKHLPFF 412 Query: 300 ASG-------------AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDT 341 S A + P DL +PE+ GR PV L +L + ILT+ Sbjct: 413 TSASPESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEP 472 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++L+ QY L GI L FT ++ +A A + + GAR L+T ME +L D Sbjct: 473 RNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAM 527 Query: 402 FSASDLQEKTVVI 414 + K V++ Sbjct: 528 YETPGSSVKFVLV 540 >gi|307129928|ref|YP_003881944.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Dickeya dadantii 3937] gi|306527457|gb|ADM97387.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Dickeya dadantii 3937] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSNNSIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGLSQKATEGELLSQVEPGDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV LK L++ IL + ++ L QY+ L K EG L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L + + L+ VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVID 399 >gi|72398636|gb|AAZ72731.1| ATP-dependent clp protease ATP-binding subunit [Bacillus thuringiensis serovar kurstaki] Length = 419 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+A+A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PVEIREILDEYVIGQDSAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L+ ILT ++ L+ Q++EL++ + + L+F E ++ +A Sbjct: 296 PEFIGRLPVIANLEPLDGDALVDILTKPKNALVKQFQELLELDDVELEFEEGALIEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V D E +L + D Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMFELPSRKDIEKCILTKETVADNEPPKLVLQD 409 >gi|325570035|ref|ZP_08145960.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus casseliflavus ATCC 12755] gi|325156863|gb|EGC69034.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus casseliflavus ATCC 12755] Length = 414 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+E+++ L+ Y+IGQ AKR +A+A+ N ++R + D EL NI L+GPTG GKT Sbjct: 64 PQELLNVLNEYVIGQDRAKRTLAVAVYNHYKRVNVETTAEDVELQKSNICLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 166 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 57/235 (24%) Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289 +++M E GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 169 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTTASVPPQGGRKH 227 Query: 290 ------SINTDHILFIASGAFHVSR--------------------------------PAD 311 I+T +ILFI GAF P D Sbjct: 228 PHQEMIQIDTTNILFIVGGAFDGIETIVKNRLGEKTIGFGTNNKRLEEGESVMQQIIPED 287 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 LL PE GR PV L+ L D ILT+ ++ L+ QY++LM + L+F ++ Sbjct: 288 LLKFGLIPEFIGRLPVMAALEKLTVDDLVHILTEPKNALVKQYQKLMALDDTELEFEPEA 347 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 + A+A A+ N+ GAR L++++E ++ ++ F+ SD + V I E + Sbjct: 348 LRAIAAQAIERNT-----GARGLRSIIENIMMEVMFNVPSDESIQKVTITEEAAK 397 >gi|315645730|ref|ZP_07898854.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453] gi|315279208|gb|EFU42518.1| hypothetical protein PVOR_09640 [Paenibacillus vortex V453] Length = 421 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PR+I LD+Y+IGQ AK+++++A+ N ++R + D EL NILL+GPTG GKT Sbjct: 64 PRDIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIEDVELQKSNILLLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----HVSR-----------------------------PADLL---- 313 +T +ILFI GAF ++ R P DLL Sbjct: 236 DTTNILFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL++ ++ L QY++L++ + + L F +++A+A Sbjct: 296 IPEFVGRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPGALEAIAR 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L++++E ++ D+ + + K VI + VR Sbjct: 356 EAIKRNT-----GARGLRSIIEGIMLDVMYEVPSRDDIKDCVITEQVVR 399 >gi|251790647|ref|YP_003005368.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya zeae Ech1591] gi|247539268|gb|ACT07889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya zeae Ech1591] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + +D + EL NILL+GPTG G Sbjct: 66 TPHEIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRT-SDGNNGVELGKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 125 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------VSR------------PADLL-- 313 +T ILFI GAF VS+ P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGVSQKATEGELLSQVEPGDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV LK L++ IL + ++ L QY+ L K EG L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLKELDEEALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L + + L+ VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVID 399 >gi|85713355|ref|ZP_01044369.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica OS145] gi|85692822|gb|EAQ30806.1| ATP-dependent protease ATP-binding subunit [Idiomarina baltica OS145] Length = 425 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD Y+IGQ+ AK+ +++A+ N ++R + +D EL NILL+GPTG GK Sbjct: 67 PKEIRKHLDDYVIGQERAKKVLSVAVYNHYKRLRNAGKGKDDVELGKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR PF + T TE GYVG +VE II+ L+ Sbjct: 127 TFLAETMARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 167 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILF+ GAF V P Sbjct: 240 DTSKILFVCGGAFAGLERVIEQRLATGTGIGFGAQVKSPNSAAQSEIISQVEPEDLVRYG 299 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L LN+ IL + ++ L QY L + E + L+F ED++ A+A Sbjct: 300 LIPEFIGRLPVVATLDELNEDALVEILREPKNALTKQYSALFEMEDVELEFREDALRAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+N + GAR L++++E VL Sbjct: 360 KKAMNRKT-----GARGLRSIVEGVL 380 >gi|271499598|ref|YP_003332623.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya dadantii Ech586] gi|270343153|gb|ACZ75918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya dadantii Ech586] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNSDSNNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------VSR------------PADLL-- 313 +T ILFI GAF VS+ P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGVSQKATEGELLGQVEPGDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV LK L++ IL + ++ L QY+ L K EG L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLKELDEDALIQILREPKNALTKQYQALFKLEGAELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L + + L+ VV+D Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLETMYDLPSLENVDKVVVD 399 >gi|220903966|ref|YP_002479278.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868265|gb|ACL48600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 430 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 SP+EI LD+Y+IGQ +AK+ +++A+ N ++R L D EL NILLVGP+G Sbjct: 63 LSPQEIKDRLDQYVIGQHEAKKILSVAVHNHYKRVFYADALGDDVELEKSNILLVGPSGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYVDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237 Query: 292 NTDHILFIASGAF---------HVS-------------------------RPADL----- 312 +T +ILFI GAF +S P DL Sbjct: 238 DTRNILFIVGGAFVGLDKIVESRMSGGAMGFGAKVRSSKELPLGELLDRIHPQDLVKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ H+ L+++D ILT+ ++ L+ QY++L E + L FT +++ ++A Sbjct: 298 IPEFVGRIPIITHVDELDEADLVRILTEPKNALVRQYQKLFGLENVTLRFTPNALKSIAS 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ VMER++ DI F Sbjct: 358 KAIERKT-----GARGLRNVMERIMLDIMF 382 >gi|90417349|ref|ZP_01225274.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2207] gi|90330791|gb|EAS46060.1| ATP-dependent protease ATP-binding subunit [marine gamma proteobacterium HTCC2207] Length = 428 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI LD Y+IGQ+ AKR +++A+ N ++R Q+ EL NILL+GPTG Sbjct: 68 PAEIKGNLDAYVIGQERAKRILSVAVYNHYKRLQVSESDSSASEVELGKSNILLIGPTGS 127 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 GKTLLAETLARMLDVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 182 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADLL--- 313 +T +ILF+ GAF V+ +P+DL+ Sbjct: 243 DTSNILFVCGGAFAGLEKVIRDRSEKGGIGFSAEVTSKDSQKSIGETLLDVQPSDLIGYG 302 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ IL + ++ L QY+ L EG+ LD D++DA+A Sbjct: 303 LIPEFIGRLPVVATLQELDRDALVNILVEPKNALFKQYQSLFSMEGVELDLRRDALDAIA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 D A+ + GAR L++++E VL D + Sbjct: 363 DKAIERKT-----GARGLRSILETVLLDTMY 388 >gi|33592843|ref|NP_880487.1| ATP-dependent protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|46576479|sp|Q7VXI6|CLPX_BORPE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33572491|emb|CAE42063.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella pertussis Tohama I] gi|332382256|gb|AEE67103.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella pertussis CS] Length = 434 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 4/103 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 167 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+T+ V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326 + P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD D++ A++ A+ + GA Sbjct: 314 DELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 368 Query: 387 RRLQTVMERVLEDISF 402 R L++++E L D + Sbjct: 369 RGLRSILEGALLDTMY 384 >gi|32490903|ref|NP_871157.1| ATP-dependent protease ATP-binding subunit ClpX [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340012|sp|Q8D347|CLPX_WIGBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|25166109|dbj|BAC24300.1| clpX [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 415 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI + L+ Y+IGQ+ AK+ +++++ N +++ + L ++ + EL N+LL+GPTG GKT Sbjct: 68 PCEIFNYLNSYVIGQETAKKILSVSVYNHYKKLKNLKSNNKVELGKSNVLLIGPTGSGKT 127 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 ++ LAR PFI + T TE GYVG +VE +I+ L++ Sbjct: 128 LLAETLARFLKVPFIISDATTLTEAGYVGEDVENVIQRLLN 168 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 61/233 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL L+EG S+V K G Sbjct: 179 HGIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTISAVPKKGGRKHPQQEFFH 238 Query: 291 INTDHILFIASGAFH------------------------------------VSRPADLL- 313 ++T +ILFI GAF +P DL+ Sbjct: 239 VDTTNILFICGGAFSGLNKIIEQRVLVKNSIGFNVDINNKLNINNKKNFLSQVQPEDLIK 298 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR P+ LK LN S+ IL ++ L+ QYK L EG+ L+F E+++ + Sbjct: 299 FGLIPEFVGRLPIISVLKELNISELIEILIQPKNALVKQYKLLFNLEGVELEFNENALIS 358 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDAEYVR 420 +A +++ + GAR L++++E +L D +S + +K V+ D +R Sbjct: 359 IAKESLHKKT-----GARGLRSIIEHILLDTMYSLPSKKNVQKIVINDGVILR 406 >gi|322385235|ref|ZP_08058882.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus cristatus ATCC 51100] gi|321270859|gb|EFX53772.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus cristatus ATCC 51100] Length = 409 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDSREEDDVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDEGASYMQAIVADDIQKFGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL++ + L+ QY+ L+ + + L+F E+++ A+A A Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILSEPRNALVKQYQTLLSYDDVELEFDEEALQAIARKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380 >gi|311107152|ref|YP_003980005.1| ATP-dependent Clp protease ATP-binding subunit ClpX 1 [Achromobacter xylosoxidans A8] gi|310761841|gb|ADP17290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX 1 [Achromobacter xylosoxidans A8] Length = 432 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPAEIKTFLDQYVIGQNSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 103/390 (26%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+ + V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQNSPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326 V R P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD ++ A+A A+ + GA Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRPAALKAIARKALRRKT-----GA 368 Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415 R L++++E+ L D + S K VV+D Sbjct: 369 RGLRSIIEQALLDTMYDLPSQGNVKRVVLD 398 >gi|227113466|ref|ZP_03827122.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLRELSEEALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L+ VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVID 399 >gi|161609274|ref|NP_888798.2| ATP-dependent protease ATP-binding subunit [Bordetella bronchiseptica RB50] gi|161610395|ref|NP_884266.2| ATP-dependent protease ATP-binding subunit [Bordetella parapertussis 12822] gi|46576487|sp|Q7W8X1|CLPX_BORPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46576495|sp|Q7WK82|CLPX_BORBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 434 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR 179 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+T+ V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326 + P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD D++ A++ A+ + GA Sbjct: 314 DELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 368 Query: 387 RRLQTVMERVLEDISF 402 R L++++E L D + Sbjct: 369 RGLRSILEGALLDTMY 384 >gi|307823842|ref|ZP_07654070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter tundripaludum SV96] gi|307735136|gb|EFO05985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacter tundripaludum SV96] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 64/233 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVS------TKYG--SIN 292 +GIV+LDE DKI AR G VS EGVQ+ LL LVEGS V K G +++ Sbjct: 179 WGIVYLDEIDKI-ARSPEQQTGTRDVSGEGVQQALLRLVEGSHVKIPAKGRNKDGETTMD 237 Query: 293 TDHILFIASGAF-----HV--------------------------------SRPADL--- 312 T +ILFIA G+F HV ++P+DL Sbjct: 238 TRNILFIAGGSFPGLEKHVEKRLVPSNSAIGFHAEVNKTAEKPSLDDMLNATQPSDLRKF 297 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GRFPV L++L+ +LT+ ++ L+ QY++L EG+ L F +D++ + Sbjct: 298 GLIPEFIGRFPVLAPLEALDVDALIRVLTEPKNALVRQYQQLFAYEGVELKFEQDALVEI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A A+ + GAR L+++ME++L F S+ D+++ ++DA+ V+ Sbjct: 358 AQKAIERET-----GARGLRSIMEQILRKTMFDIPSSDDVEQ--CIVDADVVK 403 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLVG 60 P +I LDRYIIGQ AK +A+A+ N ++R + + D E+ NILL+G Sbjct: 61 PAKIKEHLDRYIIGQHLAKEILAVAVYNHYKRLKHESGDAGLGEFDKDVEIGKSNILLIG 120 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+G GKT ++ LA++ G PF+ + T T+ GYVG +VE I+ L+DVA Sbjct: 121 PSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVENILVRLLDVA 170 >gi|56416581|ref|YP_153655.1| ATP-dependent protease ATP-binding subunit [Anaplasma marginale str. St. Maries] gi|222474948|ref|YP_002563363.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma marginale str. Florida] gi|255002921|ref|ZP_05277885.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma marginale str. Puerto Rico] gi|255004049|ref|ZP_05278850.1| ATP-dependent protease ATP-binding subunit ClpX [Anaplasma marginale str. Virginia] gi|269959004|ref|YP_003328793.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str. Israel] gi|81359219|sp|Q5PBC9|CLPX_ANAMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763829|sp|B9KHZ5|CLPX_ANAMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56387813|gb|AAV86400.1| ATP-dependent clp protease ATP-binding subunit [Anaplasma marginale str. St. Maries] gi|222419084|gb|ACM49107.1| ATP-dependent clp protease ATP-binding subunit (clpX) [Anaplasma marginale str. Florida] gi|269848835|gb|ACZ49479.1| ATP-dependent protease ATP-binding subunit [Anaplasma centrale str. Israel] Length = 405 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63 F+ P EI LD Y+IGQ+ +K+ +++A+ N ++R + + + E+ N+LL+GPTG Sbjct: 56 FDLKPPEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNSGVISEVEISKSNVLLIGPTG 115 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 116 SGKTLLARTLARVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVEAAQR 171 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 105/226 (46%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG SSV + G I Sbjct: 172 GIIYIDEVDKISRKSENASITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQEFIQI 231 Query: 292 NTDHILFIASGAF--------------------HVSRPAD------------------LL 313 NTD+ILFI GAF +V + AD L+ Sbjct: 232 NTDNILFIFGGAFDGLEKIIEARNRGSCMGFEANVQKIADKRKDILCYTEPEDLVKFGLI 291 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ IL + +++L+ QY +L + + + L F ++ A+A Sbjct: 292 PEFVGRIPVVTSLGRLDEETLYRILVEPKNSLVKQYTKLFEMDNLELKFDNAALLAVAKK 351 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV N+ GAR L+ +ME +L D F+ + VV+DA V Sbjct: 352 AVARNT-----GARGLRAIMESLLLDFMFNPLGCEGGKVVVDAAMV 392 >gi|212636026|ref|YP_002312551.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella piezotolerans WP3] gi|226706596|sp|B8CRF6|CLPX_SHEPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|212557510|gb|ACJ29964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella piezotolerans WP3] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 65 TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NASPKDGVELGKSNILLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 124 KTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 177 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILF+ GAF HV P DL Sbjct: 238 DTSKILFVCGGAFAGLEKVIEQRSHVGTGIGFGAEVKGEADKATISDTLLQVEPEDLVKF 297 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+ + IL++ ++ + Q+ L + E + L+F ED++ A+ Sbjct: 298 GLIPEFIGRLPVLATLAELDDAALIQILSEPKNAITKQFAALFEMEDVELEFREDALKAI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A L + GAR L++++E +L DI + Sbjct: 358 A-----LKAQTRKTGARGLRSIVEGILLDIMY 384 >gi|50954516|ref|YP_061804.1| ATP-dependent protease ATP-binding subunit [Leifsonia xyli subsp. xyli str. CTCB07] gi|61211467|sp|Q6AFZ6|CLPX_LEIXX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50950998|gb|AAT88699.1| ATP-dependent Clp protease ATP binding subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-----LPADLRD--ELMPKNILLVGP 61 P+EI L+ Y+IGQ+ AKR++A+A+ N ++R + AD D E+ NILL+GP Sbjct: 66 PKEIFGFLEEYVIGQEQAKRSLAVAVYNHYKRVRARQAITAADAIDDVEIAKSNILLIGP 125 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 126 TGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 174 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 184 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 243 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314 +T ++LFI +GAF +S P DL +P Sbjct: 244 DTTNVLFIVAGAFAGLEDIISNRAGKKGIGFGAPLHSKGDDINLFSEVLPEDLHKFGLIP 303 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT+ ++ L+ QY+ + + +G+ L+F +++A+AD+A Sbjct: 304 EFIGRLPVVTTVTQLDQDALMQILTEPKNALVRQYQRMFELDGVQLEFDHAALEAIADLA 363 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 V L T GAR L+ +ME VL I F E VV+ E V Sbjct: 364 V-LRKT----GARGLRAIMEEVLGPIMFEVPSSSEVARVVVTKEAV 404 >gi|238855232|ref|ZP_04645551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 269-3] gi|260664593|ref|ZP_05865445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii SJ-7A-US] gi|282932474|ref|ZP_06337899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 208-1] gi|313471945|ref|ZP_07812437.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 1153] gi|238832124|gb|EEQ24442.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 269-3] gi|239529127|gb|EEQ68128.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 1153] gi|260561658|gb|EEX27630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii SJ-7A-US] gi|281303423|gb|EFA95600.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 208-1] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI ++LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 65 PVEIKNQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 YLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 58/218 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKI 236 Query: 292 NTDHILFIASGAFH-------------------------VSRPAD--------------- 311 +T +ILFI GAF V + AD Sbjct: 237 DTKNILFIVGGAFDGIESIVKSRLGKKTIGFGAESKFDDVDQDADSWNKYLTTGDLVKFG 296 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L K+D ILT+ ++ L+ QY++L + + L F++ +++A++ Sbjct: 297 LIPEFIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFSIDKVDLHFSDGALEAIS 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + A+ N +GAR L+T++E + D ++ Q+ Sbjct: 357 EQALERN-----MGARGLRTIIENAMMDTMYTIPSEQD 389 >gi|170078143|ref|YP_001734781.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. PCC 7002] gi|238692806|sp|B1XN45|CLPX_SYNP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169885812|gb|ACA99525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. PCC 7002] Length = 443 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRDELMPKNILLVGP 61 PREI LD ++IGQ +AK+ +++A+ N ++R L P EL NILL+GP Sbjct: 80 PREIKHYLDEHVIGQDEAKKVLSVAVYNHYKRLSLMEDDDADPVADGIELHKSNILLIGP 139 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 140 TGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVAEAQR 197 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 61/213 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 198 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 257 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFI GAF H+S P DL Sbjct: 258 DTRNILFICGGAFVGLDKVIERRVGKKSMGFVRPGEEGSAKEQRTAELLQHLS-PEDLVK 316 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L L++ ILT ++ L+ QYK+L+K + + L+F +I A Sbjct: 317 YGMIPEFIGRIPVIASLSPLDEEALVEILTQPKNALVKQYKKLLKMDSVQLEFEPTAIRA 376 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A A + GAR L+ ++E ++ D+ + Sbjct: 377 IAQEAYRRKT-----GARALRGIVEELMLDVMY 404 >gi|227328850|ref|ZP_03832874.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 424 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDSSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH---------------------VSRPAD------------------- 311 +T ILFI GAF V AD Sbjct: 239 DTSKILFICGGAFAGLDKVIEQRTDTGRGIGFNATVKGSADKATEGELLSNVEPGDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLRELSEDALIQILREPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLDSVDKVVID 399 >gi|323498277|ref|ZP_08103279.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis DSM 21326] gi|323316705|gb|EGA69714.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio sinaloensis DSM 21326] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 APREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSMNDVSKVVID 401 >gi|254507763|ref|ZP_05119894.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus 16] gi|219549288|gb|EED26282.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus 16] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +PREI LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 APREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 95/226 (42%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEAVLLETMYELPSMDNVSKVVID 401 >gi|225548962|ref|ZP_03769939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 94a] gi|225370565|gb|EEH00002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 94a] Length = 430 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF--------------HVSRPA-----------------------DLLP 314 NT +ILFI GAF + A L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|70699876|gb|AAZ06845.1| ClpX [Microbacterium arborescens] Length = 422 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60 PREI S L+ Y++GQ AKRA+++A+ N ++R + PA+ R E+ NILL+G Sbjct: 66 PREIFSFLEEYVVGQDPAKRALSVAVYNHYKRVRAHSTLQPAEQRADDVEIAKSNILLLG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLLQAA 175 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAFH------VSR--------------------------PADL-----LP 314 +T ++LFI +GAF SR P DL +P Sbjct: 245 DTTNVLFIVAGAFAGLEEIISSRVGKHGVGFGAPLQEKDKELDLFREVEPEDLHKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT ++ + QY+ + + +G+ L+F +D++ A+AD+A Sbjct: 305 EFIGRLPVVTSVSPLDQKALIEILTGPKNAFVKQYQRMFELDGVELEFEDDALRAIADLA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 V + GAR L+ ++E VL I F SA D+ +K +V A Sbjct: 365 VARKT-----GARGLRAILEDVLGPIMFEIPSADDV-DKVIVTRA 403 >gi|317405212|gb|EFV85551.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Achromobacter xylosoxidans C54] Length = 432 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 166/390 (42%), Gaps = 103/390 (26%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+T+ V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326 V R P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD ++ A+A A+ + GA Sbjct: 314 DELDEAALVQILTEPKNALLKQFQKLFAMEGAELDVRPAALKAIARKALKRKT-----GA 368 Query: 387 RRLQTVMERVLEDISFS-ASDLQEKTVVID 415 R L++++E+ L D + S K VV+D Sbjct: 369 RGLRSIIEQALLDTMYDLPSQGNVKRVVLD 398 >gi|261749489|ref|YP_003257175.1| ATP-dependent Clp protease ATP-binding subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497582|gb|ACX84032.1| ATP-dependent protease Clp, ATPase subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 407 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + + I VS EGVQ+ LL ++EGS ++ K SI Sbjct: 180 GIVFIDEIDKISRKKNNPSITRDVSGEGVQQALLKILEGSIINVPPQGGRKHPDQKMISI 239 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADLLP 314 NT++ILFIA G F H R L+P Sbjct: 240 NTENILFIAGGTFDGIENIISDRIHQFSIGFVNPNKKNKNEKNFLKNITAHDLRKFGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GRFP+ +L SL+K + IL + ++ LI QYK+L + I ++ T++ +D + D Sbjct: 300 ELIGRFPIITYLNSLDKIMLKKILIEPKNALIKQYKKLFDLDQISIEVTDEVLDIIIDKT 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYV 419 + L +GAR L++ E++ D F+ ++ + ++ ID E V Sbjct: 360 LELG-----LGARGLRSFCEKIFVDYMFNIEEINKNQILNIDKEMV 400 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTGVGKTAIS 70 LD+Y+IGQ +AK+ +++A+ N ++R + ++ E+ NILL+G TG GKT ++ Sbjct: 71 LDKYVIGQNEAKKVISVAVYNHYKRVIHFLNNKEGNNDVEIEKSNILLIGNTGTGKTLLA 130 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + ++RL PF + T TE GYVG +VE I+ L+ A Sbjct: 131 KSISRLLKIPFTIADATALTEAGYVGEDVESILTRLLQSA 170 >gi|238754236|ref|ZP_04615593.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia ruckeri ATCC 29473] gi|238707483|gb|EEP99843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia ruckeri ATCC 29473] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRLNTGTGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + L+ VV+D Sbjct: 359 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSLESVDKVVVD 399 >gi|222152935|ref|YP_002562112.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus uberis 0140J] gi|254763867|sp|B9DU73|CLPX_STRU0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|222113748|emb|CAR41754.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus uberis 0140J] Length = 409 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E++ L++Y++GQ AKRA+A+A+ N ++R ++ RDE L NIL++GPTG Sbjct: 64 PKELLDVLNQYVVGQDRAKRALAVAVYNHYKRISF-SESRDEEEVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDEDASYMQEIISDDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN D ILT ++ L+ QY+ L+ +G+ L F +D+++A+A A Sbjct: 298 EFIGRLPVVAALEQLNIDDLIQILTVPKNALVKQYQALLSYDGVELSFDQDALEAIAAKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|218779309|ref|YP_002430627.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfatibacillum alkenivorans AK-01] gi|226706583|sp|B8FA63|CLPX_DESAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|218760693|gb|ACL03159.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfatibacillum alkenivorans AK-01] Length = 416 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SP+EI + LD Y+I Q AK+ +++A+ N ++R D +D ++ N+LL+GPTG GK Sbjct: 64 SPKEIKAMLDEYVIEQDHAKKVLSVAVYNHYKRLDTAFDSKDVDIQKSNVLLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR PF + T TE GYVG +VE II L+ A V ++R Sbjct: 124 TLLAQTLARFLDVPFTIADATALTEAGYVGEDVENIILSLLQNADYDVERAKR 176 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG+ SV K G + Sbjct: 177 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIVEGTTASVPPKGGRKHPQQDFVKV 236 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI GAF+ +RP DLL Sbjct: 237 DTSNILFICGGAFNGLAELIQRRQGEKVMGFGAKVQTKTDMKIGDLLVQTRPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + ILT+ ++ L+ Q+++L + EG+ L FT+ ++ A+A Sbjct: 297 IPEFVGRLPVIATLGELGEESLVRILTEPKNALVKQFQKLFEMEGVKLRFTDSALSAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A++ S GAR L+ ++E+ + DI + ++ + E V +H Sbjct: 357 GALDRKS-----GARGLRAIVEKAMLDIQYEIPSMENVKECVIGEEVVMH 401 >gi|197284028|ref|YP_002149900.1| ATP-dependent protease ATP-binding subunit ClpX [Proteus mirabilis HI4320] gi|227358101|ref|ZP_03842443.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis ATCC 29906] gi|238693153|sp|B4EU54|CLPX_PROMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|194681515|emb|CAR40395.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis HI4320] gi|227161836|gb|EEI46868.1| ATP-dependent Clp protease ATP-binding subunit [Proteus mirabilis ATCC 29906] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + D D EL NILL+GPTG G Sbjct: 66 TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLR-NGDKADGVELGKSNILLIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 125 KTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ S ++ + Sbjct: 179 GIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-------------HVS-----------------------RPADLL-- 313 +T ILFI GAF H P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQNEKASEGELLAQVEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L LN+ IL + ++ L QY+ L K EG+ L+F +D++ A+ Sbjct: 299 GLIPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L D + + + VVID Sbjct: 359 AKKAMSRKT-----GARGLRSIVEAALLDTMYDLPSFENAEKVVID 399 >gi|33573324|emb|CAE37307.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella parapertussis] gi|33575673|emb|CAE32751.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella bronchiseptica RB50] Length = 453 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 85 TPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 143 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 144 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQR 198 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 102/376 (27%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + AE + LD ++G+T+ V Sbjct: 55 ICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNH 114 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 115 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 157 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 158 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRK 212 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 213 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 272 Query: 305 ---------------------------------HVSRPADLL-----PEIQGRFPVRVHL 326 + P DL+ PE+ GR PV L Sbjct: 273 GLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATL 332 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ ++ L+ Q+++L EG LD D++ A++ A+ + GA Sbjct: 333 DELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKT-----GA 387 Query: 387 RRLQTVMERVLEDISF 402 R L++++E L D + Sbjct: 388 RGLRSILEGALLDTMY 403 >gi|313906307|ref|ZP_07839650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium cellulosolvens 6] gi|313468863|gb|EFR64222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium cellulosolvens 6] Length = 432 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 62/104 (59%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD Y+IGQ+ AKR +A+A+ N ++R EL NIL++GPTG GK Sbjct: 63 LKPVEIKKFLDEYVIGQEAAKRVLAVAVYNHYKRILSATSSDVELQKSNILMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLAKLLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 166 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL +VEG S+V + G Sbjct: 175 HGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFIQ 234 Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312 ++T +ILFI GAF SR P DL Sbjct: 235 VDTSNILFICGGAFEGLERIIESRKDTKSLGFEADLGIHKNTDIGEVLREVMPEDLVKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L L++ IL + +++L+ QY++L + +G+ L F +D++ A+A Sbjct: 295 LIPEFVGRVPVVVTLDGLDEDALVSILKEPKNSLVKQYQKLFEIDGVELKFEDDALRAMA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ +ME + D+ + Sbjct: 355 AEAVRRKT-----GARGLRAIMESTMMDVMY 380 >gi|269795729|ref|YP_003315184.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter keddieii DSM 10542] gi|269097914|gb|ACZ22350.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sanguibacter keddieii DSM 10542] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PR I L++YIIGQ+ AKR++A+A+ N ++R Q R ++ NILL+G Sbjct: 64 PRAIFDFLEQYIIGQEGAKRSLAVAVYNHYKRIQAGEGARSVGEDASQVDIAKSNILLIG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 PTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 173 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 183 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 242 Query: 292 NTDHILFIASGAF----------------------HVSRPAD--------------LLPE 315 +T ++LFI +GAF H + AD L+PE Sbjct: 243 DTTNVLFIVAGAFAGLDEIISSRAGKHGIGFGAPLHTADAADAFGDVMPEDLLKFGLIPE 302 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV + L+++ ILT+ + L+ QY+ + + +G+ L+FT+D++ A+AD A+ Sbjct: 303 FIGRVPVITTVTPLDQTSLVRILTEPRNALVKQYQRMFEIDGVELEFTDDAVAAIADQAL 362 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 L T GAR L+ +ME VL+ + F Sbjct: 363 -LRGT----GARGLRAIMEEVLQQVMF 384 >gi|186681336|ref|YP_001864532.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc punctiforme PCC 73102] gi|238691194|sp|B2IT91|CLPX_NOSP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|186463788|gb|ACC79589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nostoc punctiforme PCC 73102] Length = 446 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 11/128 (8%) Query: 3 LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDEL 51 ++FN PREI LD ++IGQ +AK+ +++A+ N ++R + AD EL Sbjct: 74 ISFNQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKATGKAAADDAVEL 133 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA Sbjct: 134 QKSNILLIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193 Query: 112 NIVRESRR 119 + E++R Sbjct: 194 LDIEEAQR 201 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 60/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T +ILF+ GAF H++ P DL Sbjct: 262 DTSNILFVCGGAFVGLEKVVDQRVGKKAIGFVQPGEGQTKEKRAADTLRHLA-PDDLVKF 320 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR P+ + L++ ILT S L+ QY++L+K + + LDF D++ A+ Sbjct: 321 GMIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALRAI 380 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L+ ++E ++ D+ + Sbjct: 381 AQEAYRRKT-----GARALRGIVEELMLDVMY 407 >gi|146281742|ref|YP_001171895.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas stutzeri A1501] gi|145569947|gb|ABP79053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudomonas stutzeri A1501] gi|327479989|gb|AEA83299.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudomonas stutzeri DSM 4166] Length = 438 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 60/227 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVSTKYGS--------- 290 +GIV++DE DK+ AR G G V S EGVQ+ LL LVEGS V G Sbjct: 177 QWGIVYIDEVDKL-ARRGGGGTAVRDISGEGVQQALLKLVEGSEVRIGKGGRRGEHGEEQ 235 Query: 291 -INTDHILFIASGAF-----------HV--------SRPAD------------------- 311 ++T +ILFIA GAF H +RP Sbjct: 236 VVDTRNILFIAGGAFPGLETLVGSRVHPRGSAIGFHARPQQQAPSINELLAALLPDDLHE 295 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 L+PE GRFP+ L+ L+ + IL++ + L+ QY++L +G+ L+F+E ++ Sbjct: 296 FGLIPEFIGRFPIITFLRELDHATLLRILSEPRNALVKQYQQLFAYQGVKLEFSEAALGH 355 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 +AD A+ L T GAR L+ VME L+ F + Q ++ ++D Sbjct: 356 IADQAL-LRRT----GARGLRAVMESALQRTMFEMPAQPQLRSCLLD 397 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 11/121 (9%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNIL 57 +P + LD +IGQ +AK +A+A+ N + R QL + EL NIL Sbjct: 59 LTPAAYMQHLDESVIGQDEAKETLAVAVYNHYLRLLNCTREPVCQLGGTV--ELEKSNIL 116 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 + GP+G GKT + R LAR+ G PF + T T+ GYVG +V+ II L++ A V+++ Sbjct: 117 MAGPSGTGKTLLVRTLARILGVPFASADATTLTQAGYVGDDVDSIIARLLEAAGGDVQKA 176 Query: 118 R 118 + Sbjct: 177 Q 177 >gi|160898087|ref|YP_001563669.1| ATP-dependent protease ATP-binding subunit ClpX [Delftia acidovorans SPH-1] gi|238687212|sp|A9C1U9|CLPX_DELAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|160363671|gb|ABX35284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Delftia acidovorans SPH-1] Length = 420 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD Y+IGQ KR +A+A+ N ++R + EL NILL+GPTG Sbjct: 66 TPAEIKANLDNYVIGQDLPKRTLAVAVYNHYKRLRHKDKAGKDEIELAKSNILLIGPTGS 125 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ Sbjct: 126 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQI 240 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI GAF +S P DL+ Sbjct: 241 DTTNILFICGGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEVFQEIEPEDLIKFGI 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L + ILT+ ++ L+ QY +L+ EG+ L+ ++ A+A Sbjct: 301 IPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIAR 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+ L Sbjct: 361 KALARKT-----GARGLRSILEQSL 380 >gi|320540338|ref|ZP_08039990.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Serratia symbiotica str. Tucson] gi|320029658|gb|EFW11685.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Serratia symbiotica str. Tucson] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R + A EL NILL+GPTG GK Sbjct: 66 TPHEIRQHLDDYVIGQEQAKKVLAVAVYNHYKRLRNSDASNGVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 126 TLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLINF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F +++++A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGAELEFRDEALNAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + + + VVID Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVID 399 >gi|297160514|gb|ADI10226.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces bingchenggensis BCW-1] Length = 428 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD---ELMPKNILLVGPT 62 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A RD EL NILL+GPT Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENSAHNRDDGIELAKSNILLLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ + Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAS 171 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ L F +++A+AD Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELHFDRPALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ L T GAR L+ ++E VL Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380 >gi|238764859|ref|ZP_04625800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia kristensenii ATCC 33638] gi|238696966|gb|EEP89742.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia kristensenii ATCC 33638] Length = 423 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ V GAR L++++E L D + + D EK VV Sbjct: 359 AKKAM-----VRKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398 >gi|317486005|ref|ZP_07944860.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6] gi|316922778|gb|EFV44009.1| ATP-dependent Clp protease [Bilophila wadsworthia 3_1_6] Length = 418 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62 +P+EI + LD Y+IGQ +AK+ +A+A+ N ++R L D EL NILLVGP+ Sbjct: 61 LTPQEIKARLDEYVIGQDEAKKILAVAVHNHYKRVFYADALKGDDGVELEKSNILLVGPS 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 GSGKTLLAKTLARVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 59/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKISRKADGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF PADL Sbjct: 238 DTSNILFIVGGAFIGLDKIVEQRMRGGSMGFGAKVETKKERTLGELLEQVHPADLVQFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV H+ L + D ILT+ ++ L QY++L + + + L FT D++ A+A Sbjct: 298 IPEFVGRIPVLTHVDDLGEDDLVRILTEPKNALTRQYQKLFELDNVTLRFTSDALRAIAH 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 A+ + GAR L+ VME V+ DI + + ++ V+ DA Sbjct: 358 RAIERKT-----GARGLRNVMESVMLDIMYQLPSMPGVKECVINDA 398 >gi|313836729|gb|EFS74443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA2] gi|314929865|gb|EFS93696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL044PA1] gi|314972292|gb|EFT16389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA3] gi|328907722|gb|EGG27486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium sp. P08] Length = 430 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q D+ EL NILL+ Sbjct: 65 PRELCDFLDAWVIGQEEAKRTLSVAVYNHYKRIQSAVDVPHARRAEDDGVELGKSNILLL 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASG----------------------------------AFHVSRPADL----- 312 +T +ILFI G AF + P DL Sbjct: 245 DTTNILFIVGGSFAGLEDIITKRIGTRPLGFNNDPGMRKVVEGPEAFSLVCPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L F++ ++ A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFSDGALSAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVAQGT-----GARGLRAIIEETLMDVMF 389 >gi|153005127|ref|YP_001379452.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter sp. Fw109-5] gi|152028700|gb|ABS26468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter sp. Fw109-5] Length = 426 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54 +P EI S LD Y++GQ AK+ +++A+ N ++R Q P R EL Sbjct: 62 TPAEIKSFLDDYVVGQDKAKKVLSVAVYNHYKRVYSKKPARPQRPGQTRTGSDDVELQKS 121 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ A Sbjct: 122 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHAA 177 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVAR-DSGNGI-GVSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + DS + V EGVQ+ LL ++EG+ + +Y + Sbjct: 187 GIVYVDEIDKIARKGDSPSPTRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYIQV 246 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADL----- 312 +T +ILFI GAF V R P+DL Sbjct: 247 DTSNILFIVGGAFCGLEQVIRRRAGVKALGFGAKIERKEEASLGELLARVEPSDLVKFGM 306 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L++ D ILT ++ L QY +L + E + L FT++S+ A A Sbjct: 307 IPEFVGRLPIIATLADLSEEDLVTILTQPKNALTKQYVKLFELEKVKLSFTKESLRATAR 366 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ S GAR L+ ++E+ + DI + Sbjct: 367 EAMRRKS-----GARGLRAILEQAMLDIMY 391 >gi|238751007|ref|ZP_04612503.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia rohdei ATCC 43380] gi|238783608|ref|ZP_04627629.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia bercovieri ATCC 43970] gi|238795541|ref|ZP_04639056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia mollaretii ATCC 43969] gi|238710697|gb|EEQ02919.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia rohdei ATCC 43380] gi|238715486|gb|EEQ07477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia bercovieri ATCC 43970] gi|238720660|gb|EEQ12461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia mollaretii ATCC 43969] Length = 423 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGTGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A A+ + GAR L++++E L D + + D EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMDSVEKVVV 398 >gi|332160750|ref|YP_004297327.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604629|emb|CBY26127.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica Y11] gi|325664980|gb|ADZ41624.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859949|emb|CBX70278.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia enterocolitica W22703] Length = 423 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGATVKGKSEKATEGELLSQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L D + ++ EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVV 398 >gi|311031427|ref|ZP_07709517.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus sp. m3-13] Length = 422 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ+ AK+++++A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PKEIRDILDEYVIGQESAKKSLSVAVYNHYKRINSNSKIDDVELAKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGKKVIGFGTAETKADDLEQKELLGKVLPEDLLRFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT ++ L+ QY++++ + + L+F E ++ +A Sbjct: 296 IPEFIGRLPVTASLMPLDEDALIEILTKPKNALVKQYQKMLDLDNVELEFEEGALTEIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E ++ D+ + ++ K VI AE V Sbjct: 356 KAIERKT-----GARGLRSIIEGIMLDVMYELPSREDIKKCVITAETV 398 >gi|150020521|ref|YP_001305875.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho melanesiensis BI429] gi|149793042|gb|ABR30490.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho melanesiensis BI429] Length = 408 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 67/102 (65%), Gaps = 1/102 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P +I +ELD+Y+IGQ+ K+ +++A+ N ++R D D E+ N++L+GPTG GKT Sbjct: 60 PSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSNVDFDDVEIEKSNVILIGPTGSGKT 119 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 I+R LA++ PF + T TE GYVG +VE +I L++V Sbjct: 120 LIARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEV 161 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 61/228 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ + ++ Sbjct: 170 QYGIIYIDEIDKIAKKSPNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFL 229 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFI GAF H++ P DL Sbjct: 230 KVDTSNILFIVGGAFDGIEEIIKRRIQSSAMGFNAPIKSKKEMKLGEILSHIT-PEDLVQ 288 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L+ L + D ILT+ ++ ++ QYK+L + I L+ T+D++ A Sbjct: 289 YGLIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLIDNIELEVTKDALYA 348 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVID 415 +A A + GAR L++V E V+ D+ F DL EK +V + Sbjct: 349 IARKAAKRGT-----GARALKSVFEEVMIDVMFEIPDLDNVEKVIVTE 391 >gi|83644979|ref|YP_433414.1| ATP-dependent protease ATP-binding subunit ClpX [Hahella chejuensis KCTC 2396] gi|123533762|sp|Q2SK35|CLPX_HAHCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|83633022|gb|ABC28989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hahella chejuensis KCTC 2396] Length = 427 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD Y+IGQ AK A+A+A+ N ++R + + EL NILL+GPTG GK Sbjct: 69 TPHEIKETLDDYVIGQTRAKLALAVAVYNHYKRLRYEDKKGEVELGKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAF------------------------HVSRPA----------------D 311 +T +ILFI GAF +S + Sbjct: 242 DTSNILFICGGAFAGLEKIIRDRAEKGSIGFSAVVKSQLSSKSVGETLKDVETEDLIKFG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L+++ ILT + L QY +L + E + +DF ED++ ++A Sbjct: 302 LIPEFVGRLPVIATLDELDEAALIQILTQPRNALTKQYSKLFEMESVEVDFREDALRSIA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E+VL Sbjct: 362 KKAMERKT-----GARGLRSILEQVL 382 >gi|269120919|ref|YP_003309096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sebaldella termitidis ATCC 33386] gi|268614797|gb|ACZ09165.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sebaldella termitidis ATCC 33386] Length = 408 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 6/108 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62 + P EI +LD YIIGQ +AK+ +A+++ N ++R + L++ EL N+LL+GPT Sbjct: 63 YKPSEIKKKLDDYIIGQDEAKKVLAVSVYNHYKR--ITHKLQNVDDIELQKSNVLLMGPT 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 121 GSGKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLLKLIKAA 168 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 57/229 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL +VEG SSV + G Sbjct: 177 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIVEGTVSSVPPQGGRKHPNQEMIE 236 Query: 291 INTDHILFIASGAF-----------HVSR----------------------PADLL---- 313 I+T ILFI GAF ++ R P DL+ Sbjct: 237 IDTKDILFIVGGAFEGLEEKIENRLNIKRVGFGVDHTREKLDSLTIFKNVLPEDLIKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR P+ L L++ ILT+ +++L+ QYK+ ++ E + L+F +D+I+ +A Sbjct: 297 IPELVGRVPIITALSGLDEEALVKILTEPKNSLVKQYKKYLELENVSLEFKKDAIEEIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 +A IGAR L+++ME ++ D+ + S K V+I E V+ Sbjct: 357 MAFERK-----IGARGLRSIMEGIMIDVMYDIPSKKNIKKVIITKEAVK 400 >gi|315634781|ref|ZP_07890063.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter segnis ATCC 33393] gi|315476333|gb|EFU67083.1| ATP-dependent Clp protease ATP-binding subunit [Aggregatibacter segnis ATCC 33393] Length = 416 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 66 TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ L+ Sbjct: 126 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 166 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G I Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRI 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ L QY+ L E + L+FT+D++ A+ Sbjct: 299 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVELEFTKDALIAM 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E VL D + L+ EK VV Sbjct: 359 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVV 398 >gi|269469209|gb|EEZ80743.1| ATP-dependent protease Clp, ATPase subunit [uncultured SUP05 cluster bacterium] Length = 418 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63 ++++P+E+ L+ Y+IGQ AK+ +++A+ N ++R Q D EL NIL++GPTG Sbjct: 58 WDYTPKELRDFLNEYVIGQDHAKKVLSVAVYNHYKRLQSGYISNDVELDKSNILMIGPTG 117 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF + T TE GYVG +VE +I+ L+ Sbjct: 118 SGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKSLL 161 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI R I VS EGVQ+ +L L+EG+ SV + G + Sbjct: 174 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTVASVPPQGGRKHPNQETIDV 233 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 234 DTSKILFICGGAFDGLDKIIGKRVEKSTGIGFSAAVKDQSKEKTLSDLFDLIEPEDLIKY 293 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV+ L L++ ILT ++++I Q+KE+ EG+ L F + ++ A+ Sbjct: 294 GLIPELVGRLPVQTSLGELDEDALIQILTKPKNSVIKQFKEVFLMEGVKLTFKKPALSAI 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A +A+ + GAR L++++E +L D F ++ VVID E V Sbjct: 354 AKLAIKRKT-----GARGLRSIIEDLLLDTMFDLPSMESVMEVVIDKEVV 398 >gi|210634105|ref|ZP_03297993.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279] gi|210158956|gb|EEA89927.1| hypothetical protein COLSTE_01911 [Collinsella stercoris DSM 13279] Length = 471 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 15/117 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53 +P EI L Y++GQ+DAKRA+++A+ N +RR L D D EL Sbjct: 106 TPHEIYDALSLYVMGQEDAKRAMSVAVYNHYRRV-LEGDDADKAHGAHAASFEEDVELAK 164 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L++ A Sbjct: 165 SNILLLGPTGTGKTLLAQTLARVLEVPFAIADATALTEAGYVGEDVENILLKLINAA 221 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV G I Sbjct: 231 GIIYVDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTVASVPPTGGRKHPQQELLQI 290 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF ++ P + Sbjct: 291 DTTNILFICGGAFVGLDKIISDRVGNQGVGFNSEIAGPTSKDENILLKQVLPEDLNNFGM 350 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV ++L + D +ILT+ + ++ QY+ + E + L F ++++ +A Sbjct: 351 IPEFIGRTPVITQTQALTEDDLVMILTEPRNAVVKQYRRMFAMENVELVFEDEALHEIAK 410 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+++ E VL+ F Sbjct: 411 KALARKT-----GARGLRSICEEVLQQTMF 435 >gi|306820815|ref|ZP_07454439.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551133|gb|EFM39100.1| ATP-dependent Clp protease ATP-binding subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDEL--MPKNILLVGPTGVGK 66 P+EI S LD YIIGQ+ AK+ ++++L N ++R + +D++ NILL+GPTG GK Sbjct: 64 PKEIKSFLDEYIIGQESAKKVLSVSLYNHYKRVYNLENKKDDIDIQKSNILLLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ + Sbjct: 124 TLLAQTLAKIMNVPFAIADATTLTEAGYVGEDVENILLKLIQAS 167 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKITRKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPSQELIQI 236 Query: 292 NTDHILFIASGAFH---------------------VSR------------------PADL 312 +T +I+FI GAF VS+ L Sbjct: 237 DTTNIMFIVGGAFEGIDEIIKKRMGKNSIGFGTEIVSKEDVNKEKIYKKVQTEDLLKYGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L++S IL + +++L+ Q+K+L + + + L+ ++++ +A Sbjct: 297 IPEFVGRLPIVASLDPLDESALVKILKEPKNSLVKQFKKLFELDNVELEIDDEALIEVAR 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E + DI + Sbjct: 357 KAIERKT-----GARGLRSILEETMMDIMY 381 >gi|307747216|gb|ADN90486.1| ATP-dependent Clp protease ATP-binding subunit clpX [Campylobacter jejuni subsp. jejuni M1] gi|315927197|gb|EFV06547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929560|gb|EFV08749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 305] gi|315932559|gb|EFV11491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 327] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + ++ +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394 >gi|300859019|ref|YP_003784002.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis FRC41] gi|300686473|gb|ADK29395.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis FRC41] gi|302331272|gb|ADL21466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Corynebacterium pseudotuberculosis 1002] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58 P EI + LD+Y+IGQ DAKR +++A+ N ++R + D EL NIL+ Sbjct: 67 PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V+ ++ Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186 Query: 119 R 119 R Sbjct: 187 R 187 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312 +T +ILFI +GAF S+ P DL Sbjct: 248 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 307 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L++ +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD Sbjct: 308 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420 +A+ + GAR L+ +ME +L + + D ++ VV + A VR Sbjct: 368 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAASVR 411 >gi|160933530|ref|ZP_02080918.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753] gi|156867407|gb|EDO60779.1| hypothetical protein CLOLEP_02376 [Clostridium leptum DSM 753] Length = 439 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 T P EI ++LD Y+IGQ+ AK A+++A+ N ++R +D E+ N+LL+GPTG Sbjct: 66 TVLLKPEEIKAKLDEYVIGQEKAKIALSVAVYNHYKRIYFGSD-DVEINKSNVLLLGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 VGKTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENILLRLIQAA 171 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S+V + G I Sbjct: 181 GIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVSNVPPQGGRKHPQQEFIQI 240 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADL----- 312 +T +ILFI GAF V + P DL Sbjct: 241 DTSNILFICGGAFDGLEKVVEKRTGSSSLGFGAQVRSKKELDTTKWMGEVVPHDLVKYGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L L++ ILT+ +++++ QYK+L + + LDF + +++A+A Sbjct: 301 IPELVGRLPVITALDGLDQEALVRILTEPKNSILKQYKKLFALDKVELDFEKSALEAVAQ 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A++ + GAR L+++ME L D+ + SD + V++D E V+ Sbjct: 361 KAIDRRT-----GARGLRSIMEETLTDLMYKVPSDYSVEKVIVDGETVK 404 >gi|332970862|gb|EGK09840.1| ATP-dependent Clp protease ATP-binding subunit [Kingella kingae ATCC 23330] Length = 422 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 68/102 (66%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P ++V++L+ ++IGQ+ AK+++A+A+ N ++R + P D D EL N+L++GPTG G Sbjct: 66 TPAQLVAQLNEHVIGQEQAKKSLAVAVYNHYKRLRQP-DTADKVELSKSNVLMIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT + + LAR PF + T TE GYVG +VE I+ L+ Sbjct: 125 KTYMVQSLARHLNVPFAMADATTLTEAGYVGEDVESIVTKLL 166 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ + + ++ ++ Sbjct: 179 GIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRRNPNQQFIAV 238 Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADLL--- 313 +T +ILFI GAF H P DL+ Sbjct: 239 DTSNILFICGGAFAGLDKVIRQRTEKGGIGFGANVHSKDEDSRISELFEQVEPEDLIRFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L E L +D++ +A Sbjct: 299 LIPELIGRLPVLTSLAELDEVALVRILTEPKNALVKQYQALFAMENKALQIDDDALRVVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 +A+ + GAR L+++MER L + + L + TVV++ Sbjct: 359 QLAMKRKT-----GARGLRSIMERALLETMYLLPTLDDVATVVVN 398 >gi|320094138|ref|ZP_08025951.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319978940|gb|EFW10470.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 419 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM---PKNILLVGPTGVG 65 PREI L+ ++IGQ AKRA+++A+ N ++R + +E M NILL+GPTG G Sbjct: 65 PREINEFLNSWVIGQTRAKRALSVAVYNHYKRVRSREAGHEEDMLGTKSNILLLGPTGTG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LARL PF V+ T TE GYVG +VE I+ L+ A ++++ R Sbjct: 125 KTHLARSLARLLEVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAER 178 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPSGGRKHPHQQFLEI 238 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF S DL +P Sbjct: 239 DTSGILFIAAGAFAGIEEIVKARLGQRSTGFGSELKSASEMGDLYEAVNAEDLHKFGMIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ K L K D +LT+ ++L+ QY+ L + +GI LDFT ++ A+A A Sbjct: 299 EFIGRLPILTSTKELTKEDLVRVLTEPNNSLVRQYQHLFELDGIELDFTRGALLAIAAQA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 N T GAR L ++MER L D+ F Sbjct: 359 -NERKT----GARGLSSIMERTLSDLMF 381 >gi|317133440|ref|YP_004092754.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ethanoligenens harbinense YUAN-3] gi|315471419|gb|ADU28023.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ethanoligenens harbinense YUAN-3] Length = 436 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI LD+Y++GQ+DAK A+++A+ N ++R +L NILL+GPTGVGKT Sbjct: 68 PKEINEILDQYVVGQEDAKVALSVAVYNHYKRIYYGETSDVDLQKSNILLLGPTGVGKTM 127 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA + PF + T TE GYVG +VE I+ L+ A Sbjct: 128 LAQTLAHILKVPFAIADATTLTEAGYVGEDVENILLRLIQAA 169 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG S+V G Sbjct: 178 HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVSNVPPMGGRKYPHQEFIQ 237 Query: 291 INTDHILFIASGAFH----------VSR------------------------PADL---- 312 INT ILFI GAF VS+ P DL Sbjct: 238 INTKDILFICGGAFDGLDKIIEKRTVSKALGFGADVRGKKEKAGINIFKNAIPQDLVHFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L +L++ ILT+ ++ ++ QY +L + +G+ L F E +++A+A Sbjct: 298 LIPELVGRIPVITTLNALDRKALIRILTEPKNAIVKQYIKLFEMDGVQLVFDESALNAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 D A+ + GAR L+ +ME +L + F Sbjct: 358 DKAIARET-----GARGLRAIMEDLLTAVMF 383 >gi|307328454|ref|ZP_07607629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces violaceusniger Tu 4113] gi|306885866|gb|EFN16877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces violaceusniger Tu 4113] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD---ELMPKNILLVGPT 62 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q + RD EL NILL+GPT Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGHSRDDGIELAKSNILLLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY L + +G+ LDF +++A+AD Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYMRLFELDGVELDFDHPALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ L T GAR L+ ++E VL Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380 >gi|306823252|ref|ZP_07456628.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium dentium ATCC 27679] gi|309801887|ref|ZP_07696002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium dentium JCVIHMP022] gi|304553884|gb|EFM41795.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium dentium ATCC 27679] gi|308221443|gb|EFO77740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium dentium JCVIHMP022] Length = 440 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 94/325 (28%), Positives = 140/325 (43%), Gaps = 91/325 (28%) Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 SD D++VA SN + G VG L++ +KVM P ++ Sbjct: 119 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 159 Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268 D + D++TV + IQ + GIV++DE DKI AR SG ++R Sbjct: 160 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 218 Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304 EGVQ+ LL ++EG+ S I+T ILFI GAF Sbjct: 219 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 278 Query: 305 ---------------H--------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFR 335 H AD LLPE GR PV L+ L + D Sbjct: 279 RLGARESGFGAAWHDHEVPKRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 338 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT E+ L+ QY++L +G+ L FTE+++ +A ++ + GAR L++++E+ Sbjct: 339 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 393 Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419 LED F L + + V++DA V Sbjct: 394 TLEDTMFQLPSLDDVSEVIVDAASV 418 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50 P +I + LD Y++GQ+ AKR +++A+ N ++R + A+L D + Sbjct: 67 PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 126 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ A Sbjct: 127 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 186 >gi|88860445|ref|ZP_01135083.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas tunicata D2] gi|88817643|gb|EAR27460.1| ATP-dependent protease ATP-binding subunit [Pseudoalteromonas tunicata D2] Length = 427 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 5/114 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+EI + LD Y+IGQ AK+ +++A+ N ++R Q +++ EL NILL+GPTG G Sbjct: 70 PKEIRAHLDDYVIGQDHAKKVLSVAVYNHYKRLKNQDKSSNI--ELGKSNILLIGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ +A+L PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 KTLLAETMAKLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADL--- 312 +T ILFI GAF +S P DL Sbjct: 242 DTSKILFICGGAFAGLDKVIEQRSTKNTGIGFGVDVKSSAAGRSISESFKDVEPEDLVKY 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY L K E + L+F +D++ A+ Sbjct: 302 GLIPEFIGRLPVVATLTELDEAALVQILNEPKNALTKQYGALFKMENVELEFRDDALLAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL + + +++ VVID ++ Sbjct: 362 AKKAMDRKT-----GARGLRSIVEGVLLETMYELPSMEDVSKVVIDETVIK 407 >gi|327398619|ref|YP_004339488.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea maritima DSM 10411] gi|327181248|gb|AEA33429.1| ATP-dependent Clp protease ATP-binding subunit clpX [Hippea maritima DSM 10411] Length = 418 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILL 58 KLT + +P EI LD YI+ Q DAK+ +A+A N ++R Q L EL NILL Sbjct: 62 KLT-SLTPEEIKKRLDEYIVSQDDAKKVLAVAAYNHYKRINSQTLKRKDDVELEKSNILL 120 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 +GPTG GKT I++ LA++ PF + T TE GYVG +VE I+ Sbjct: 121 IGPTGTGKTLIAKTLAKILNVPFAIADATSLTEAGYVGEDVENIL 165 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YG----------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EGS V+ YG I Sbjct: 182 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGSIVNVPPYGGRKHPQQEFIQI 241 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF ++R P DL+ Sbjct: 242 DTTNILFICGGAFEGLENIIARRINKKAIGFTNPVNIDKKEKYNLLKQATPEDLMRYGLI 301 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR V L LN+ + ILT+ ++ L+ QY ++ + + L T+D++ A+A Sbjct: 302 PELIGRLHVVATLNELNEEELVRILTEPKNALVKQYSKMFSMDNVKLTITDDALRAIARK 361 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ +GAR L+++ME ++ D+ F +++ K +ID V Sbjct: 362 AIERK-----VGARGLRSIMEEIMVDLMFKIPSMKDVKECIIDENVV 403 >gi|310778379|ref|YP_003966712.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter polytropus DSM 2926] gi|309747702|gb|ADO82364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ilyobacter polytropus DSM 2926] Length = 416 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 5/108 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62 P+EI + LD Y+IGQ+ AK+ +A+++ N ++R L D R+E L N+LL+GPT Sbjct: 65 LKPKEIKTSLDEYVIGQEHAKKVLAVSVYNHYKRI-LHKDKREESDVELQKSNVLLIGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 124 GSGKTLLAQTLARTLHVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 171 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V + G I Sbjct: 181 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTKAQVPPQGGRKHPHQELIEI 240 Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADL----- 312 +T +ILF+ GAF +S+ P DL Sbjct: 241 DTSNILFVVGGAFEGLDKVIKSRTKKKVIGFGADMKYDSKESEDETLSKVLPEDLVKHGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L++ IL + ++ +I QYK+ + E + L+F ED++ +A Sbjct: 301 IPELIGRLPVLTTLEHLDEDALISILVEPKNAIIKQYKKFFEFEEVKLEFEEDALKRIAH 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 +A++ IGAR L++++E + Sbjct: 361 MAIDRK-----IGARGLRSILESTM 380 >gi|309751686|gb|ADO81670.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae R2866] Length = 411 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397 >gi|260913094|ref|ZP_05919576.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325] gi|260632681|gb|EEX50850.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325] Length = 412 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 63 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKKIIDVELGKSNILLIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ LV Sbjct: 123 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLV 163 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 59/217 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 176 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRV 235 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313 +T ILFI GAF HV P DL+ Sbjct: 236 DTSKILFICGGAFAGLDKVIEKRVHVGSGIGFSAEVKGKQDKATLSQLFEQVEPDDLMKF 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ LI QY+ L E + L+FT++++ A+ Sbjct: 296 GLIPEFIGRLPVVAPLAELDEEALVKILTEPKNALIKQYQALFGLEDVALEFTQEALIAM 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A A+ + GAR L++++E VL D + L Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSL 387 >gi|302519064|ref|ZP_07271406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. SPB78] gi|318060126|ref|ZP_07978849.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp. SA3_actG] gi|318076384|ref|ZP_07983716.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp. SA3_actF] gi|333027109|ref|ZP_08455173.1| putative ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp. Tu6071] gi|302427959|gb|EFK99774.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. SPB78] gi|332746961|gb|EGJ77402.1| putative ATP-dependent protease ATP-binding subunit ClpX [Streptomyces sp. Tu6071] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD--ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q P D EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGPTGRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTHLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADL----- 312 +T ++LFI GAF H+ P DL Sbjct: 242 DTTNVLFIVGGAFSGLERIIEARAGAKGIGFGATIRSKREIESSDHLREVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + SL++ IL + L+ QY+ L + +G+ L+F ++++A+AD Sbjct: 302 IPEFIGRLPVVTSVHSLDREALLRILVEPRHALVKQYQRLFELDGVELEFEHEALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + Q+ VVI A+ VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQPVMYEVPSRQDVGRVVITADVVRSNV 408 >gi|86149706|ref|ZP_01067936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597315|ref|ZP_01100550.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 84-25] gi|85839974|gb|EAQ57233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190376|gb|EAQ94350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 84-25] gi|284925551|gb|ADC27903.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni IA3902] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + ++ +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394 >gi|150016210|ref|YP_001308464.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium beijerinckii NCIMB 8052] gi|189082489|sp|A6LT28|CLPX_CLOB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|149902675|gb|ABR33508.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium beijerinckii NCIMB 8052] Length = 429 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ+ AK+++A+A+ N ++R D+ EL NILL+GPTG GKT Sbjct: 63 PNEIKEYLDSYVIGQERAKKSLAVAVYNHYKRINTNKEDIDVELSKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 123 LLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313 NT +ILFI GAF + +R PADLL Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAQIQAKHEKDVGSLLKEIMPADLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+K ILT ++ L+ QYK+L + + + L+F E S+ A+A+ Sbjct: 295 IPEFVGRLPILVTLESLDKEALIQILTKPKNALVKQYKKLFELDDVKLEFDEKSLIAIAE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A++ + GAR L+ ++E ++ +I + SD + V+I E ++ Sbjct: 355 EAISRQT-----GARGLRAIIEDIMNEIMYEIPSDNRITNVIITEEAIK 398 >gi|320450476|ref|YP_004202572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus scotoductus SA-01] gi|320150645|gb|ADW22023.1| ATP-dependent Clp protease, ATP-binding, subunit ClpX [Thermus scotoductus SA-01] Length = 400 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 55/224 (24%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 167 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIP 225 Query: 291 INTDHILFIASGAFH----------------VSR--------------PADL-----LPE 315 +NT +ILFI GAF +R P DL +PE Sbjct: 226 VNTKNILFILGGAFEGLENIVKARTERTTIGFTRGKAKEAHEEPLEVIPEDLVKFGMIPE 285 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR P+ V L L + D ILT+ ++ L+ QY+ELM+ EGI L FT+ ++ +A A+ Sbjct: 286 FVGRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELMRLEGIELRFTQAALKEIARRAL 345 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ ++E+ + D+ F A + +VID ++ Sbjct: 346 KRGT-----GARGLRAILEKTMVDLMFEAPGSGVRELVIDLPHL 384 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI + LD+Y++GQ+ AKRA+++A+ N ++R P E+ NILL+GPTG GKT Sbjct: 58 KPQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKSNILLIGPTGTGKT 114 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR PF + T TE GYVG +VE +I L+ A Sbjct: 115 LLAETLARFLDVPFAIADATTLTEAGYVGEDVENVILRLLQNA 157 >gi|86151365|ref|ZP_01069580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 260.94] gi|85841712|gb|EAQ58959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 260.94] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + ++ +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 394 >gi|218561938|ref|YP_002343717.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|21263489|sp|Q9PIM0|CLPX_CAMJE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|112359644|emb|CAL34429.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 417 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 70 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 128 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 129 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 185 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 186 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQI 245 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 246 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 305 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 306 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 365 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + ++ +VI E V+ Sbjct: 366 RKT-----GARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVK 404 >gi|123443341|ref|YP_001007315.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. enterocolitica 8081] gi|6225174|sp|O33873|CLPX_YEREN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215219|sp|A1JNN1|CLPX_YERE8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2580495|gb|AAC45783.1| ClpX [Yersinia enterocolitica] gi|122090302|emb|CAL13168.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 423 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRRHLDDYVIGQEPAKKVLAVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 239 DTSKILFICGGAFAGLDKVIGQRINTGSGIGFGATVKGKSEKATEGELLRQAEPEDLIKF 298 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L D + ++ EK VV Sbjct: 359 AKKAMARKT-----GARGLRSIVEGALLDTMYDLPSMESVEKVVV 398 >gi|121613694|ref|YP_999990.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 81-176] gi|157414572|ref|YP_001481828.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. jejuni 81116] gi|167004946|ref|ZP_02270704.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter jejuni subsp. jejuni 81-176] gi|205356070|ref|ZP_03222838.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter jejuni subsp. jejuni CG8421] gi|87250025|gb|EAQ72983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 81-176] gi|157385536|gb|ABV51851.1| ATP-dependent clp protease ATP-binding subunit clpX [Campylobacter jejuni subsp. jejuni 81116] gi|205346194|gb|EDZ32829.1| ATP-dependent CLp protease ATP-binding subunit CLpX [Campylobacter jejuni subsp. jejuni CG8421] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394 >gi|301169433|emb|CBW29033.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Haemophilus influenzae 10810] Length = 411 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397 >gi|229847177|ref|ZP_04467281.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] gi|229809853|gb|EEP45575.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 7P49H1] gi|309973788|gb|ADO96989.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae R2846] Length = 411 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397 >gi|210621781|ref|ZP_03292810.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275] gi|210154545|gb|EEA85551.1| hypothetical protein CLOHIR_00755 [Clostridium hiranonis DSM 13275] Length = 412 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 71/111 (63%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+E++ L+ Y+IGQ+ AK+A+++A+ N ++R ++ ++ NILL+GPTG GKT Sbjct: 65 PKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSNSENDVDIQKSNILLLGPTGSGKTL 124 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA+ PF + T TE GYVG +VE I+ L+ A N V ++ + Sbjct: 125 LAQTLAKTLNVPFAMADATALTEAGYVGEDVENILLKLIQAADNDVEKAEK 175 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNREFIKI 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFILGGAFDGLEQIIQRRSSEKTLGFGAKIESKKNLDLGKIYENVLPEDLLKYGI 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ IL + ++ L+ QYK+L E + L+F +D++ +A Sbjct: 296 IPEFIGRIPVIATLNMLDEDALVTILKEPKNALVKQYKKLFDIEDVELEFEDDALREIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A++ N+ GAR L++++E ++ D + S+ + VV+ E V Sbjct: 356 KAIDRNT-----GARGLRSIVENIMMDTMYEVPSEENVEKVVVTKEAV 398 >gi|297199669|ref|ZP_06917066.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sviceus ATCC 29083] gi|197713961|gb|EDY57995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sviceus ATCC 29083] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQESAKKALSVAVYNHYKRVQAGENGGGSSRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEIPSRKDVARVVITADVVHSNV 408 >gi|196230687|ref|ZP_03129548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chthoniobacter flavus Ellin428] gi|196225028|gb|EDY19537.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chthoniobacter flavus Ellin428] Length = 428 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 62/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG++ + +Y + Sbjct: 187 GIVYIDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPHQEYIQV 246 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T+ ILFI GAF + P DLL Sbjct: 247 STEKILFICGGAFVGLEKMIQKRMGKKVLGFGVSAHEAVEAEVPASEAIRFTEPEDLLSF 306 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L + + +ILTDT++ +I Q+ +L+ EG+ L+ T+D++ AL Sbjct: 307 GMIPEFVGRLPVITALDQLTEDELVMILTDTKNAMIKQFTKLLSLEGVSLNVTKDALRAL 366 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A A + GAR L++++ER++ DI + S D+ E T+ Sbjct: 367 ATEAAKKGT-----GARALRSMLERIMLDIMYDVPSRDDIAEVTI 406 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 13/115 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPKN 55 P EI +LD+++IGQ+ AK+ +++A+ N ++R QQ+ E+ N Sbjct: 63 PMEIRRQLDQFVIGQERAKKVLSVAVHNHYKRILHNQSLGSGNAVQQMDPLGDVEIEKSN 122 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +LL+GPTG GKT ++R LAR+ PF + T TE GYVG +VE II L+ + Sbjct: 123 VLLIGPTGSGKTLLARTLARIIDVPFCIADATTLTEAGYVGEDVENIILRLLQAS 177 >gi|57237331|ref|YP_178344.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni RM1221] gi|57166135|gb|AAW34914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni RM1221] gi|315057700|gb|ADT72029.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni S3] Length = 407 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394 >gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] Length = 415 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AK+ +++A+ N ++R + DL EL NILL+GPTG GK Sbjct: 68 TPHQIRAHLDDYVIGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 128 TLLAQTLARQINVPFAIADATTLTEAGYVGEDVENIIQRLL 168 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 181 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLKV 240 Query: 292 NTDHILFIASGAF-----------HVSR------------------------------PA 310 +T ILFI GAF H R Sbjct: 241 DTSKILFICGGAFSGLDKIIEKRTHKDRGIGFNANVQSKEKEHDIGELFAQVETEDLIKF 300 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ ILT ++ LI QY+ L E + L+FT +++ A+ Sbjct: 301 GLIPEFVGRLPVVASLAELDEEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ + GAR L++++E VL D + L+ K VV+D + + Sbjct: 361 AKKALARKT-----GARGLRSIVEGVLLDTMYDLPSLEGLKKVVVDQDVI 405 >gi|220909725|ref|YP_002485036.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC 7425] gi|219866336|gb|ACL46675.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 7425] Length = 447 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD--ELMPKNILLVGP 61 PREI LD ++IGQQ+AK+ +++A+ N ++R +Q D EL NILL+GP Sbjct: 84 PREIKKYLDDHVIGQQEAKKILSVAVYNHYKRLSLLQEQSKGGAEDAVELQKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ V+ V +++R Sbjct: 144 TGCGKTLLAQTLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVSDLDVEQAQR 201 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 61/213 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF-------------------------------------HVSRPADL-- 312 +T +ILFI GAF H+ P DL Sbjct: 262 DTTNILFICGGAFVGLEKIVEQRTGKKAMGFVREDGEPQGKEQRTADTLKHLE-PEDLVK 320 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV + L++ ILT+ + L+ QY++L+K + + L+F D+I A Sbjct: 321 FGMIPEFIGRIPVLAVVDPLDEEALSEILTEPRNALVKQYQKLLKMDNVQLEFKPDAIRA 380 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A A + GAR L+ ++E ++ D+ + Sbjct: 381 IAQEAYRRKT-----GARALRAIVEEIMLDVMY 408 >gi|108800542|ref|YP_640739.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp. MCS] gi|119869681|ref|YP_939633.1| ATP-dependent protease ATP-binding subunit [Mycobacterium sp. KMS] gi|126436158|ref|YP_001071849.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium sp. JLS] gi|123069914|sp|Q1B601|CLPX_MYCSS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214788|sp|A3Q2I1|CLPX_MYCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214789|sp|A1UJ35|CLPX_MYCSK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|108770961|gb|ABG09683.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium sp. MCS] gi|119695770|gb|ABL92843.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium sp. KMS] gi|126235958|gb|ABN99358.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium sp. JLS] Length = 426 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLENYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRTEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT D++DA+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTGDALDAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|257055264|ref|YP_003133096.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Saccharomonospora viridis DSM 43017] gi|256585136|gb|ACU96269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Saccharomonospora viridis DSM 43017] Length = 429 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDE---LMPKNILLVGP 61 P +I L++YIIGQ DAKR +A+A+ N ++R + A D +DE L NIL++GP Sbjct: 64 PADIHEFLEQYIIGQDDAKRTLAVAVYNHYKRIKSDASGTKDSKDEPVELAKSNILMLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ++LFI +GAF + P DL+ Sbjct: 242 DTTNVLFIVAGAFAGLEKIINDRIGKRGIGFGAEIRTKQELDESDIFKEAMPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K ILT+ + L QYK+L + + + L+FT+ +++A+AD Sbjct: 302 IPEFIGRLPVVASVSNLDKQSLVRILTEPRNALTKQYKKLFEMDNVELEFTKTALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL+ + + Sbjct: 362 QAL-LRGT----GARGLRAIMEEVLQPVMY 386 >gi|226321181|ref|ZP_03796720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 29805] gi|226233414|gb|EEH32156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi 29805] gi|312149757|gb|ADQ29828.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi N40] Length = 430 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E + +D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|75909808|ref|YP_324104.1| ATP-dependent protease ATP-binding subunit ClpX [Anabaena variabilis ATCC 29413] gi|123745060|sp|Q3M727|CLPX_ANAVT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|75703533|gb|ABA23209.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Anabaena variabilis ATCC 29413] Length = 446 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDELMPKNILLV 59 PREI LD ++IGQ +AK+ +++A+ N ++R + AD EL NILL+ Sbjct: 82 PREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSSKNGADDAVELQKSNILLI 141 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 GPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R AD+L Sbjct: 262 DTSNILFICGGAFVGLEKVVDQRGGKKSIGFVQPGEGQSKEKRAADVLRHLEPDDLVKFG 321 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ + L++ ILT S L+ QY++L+K + + LDF D++ A+A Sbjct: 322 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALKAIA 381 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLDVMY 407 >gi|86153860|ref|ZP_01072063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842821|gb|EAQ60033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni HB93-13] Length = 407 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDGTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 175 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394 >gi|313894820|ref|ZP_07828380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sp. oral taxon 137 str. F0430] gi|312976501|gb|EFR41956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sp. oral taxon 137 str. F0430] Length = 421 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ +AK+++++A+ N ++R D EL NIL++GPTG GK Sbjct: 64 PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T +ILFI GAF +S+ P DL+ Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL+++ ILT+ ++ L+ Q++ L+ +G+ L F +D++ +A Sbjct: 297 IPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQDALHLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLH 422 A+ + GAR L++++E ++ ++ + +Q T + E V H Sbjct: 357 EALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTACQVTKEVVANH 402 >gi|260583374|ref|ZP_05851145.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae NT127] gi|260093579|gb|EEW77496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae NT127] Length = 411 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397 >gi|145639475|ref|ZP_01795080.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|319775444|ref|YP_004137932.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3047] gi|145271522|gb|EDK11434.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittII] gi|317450035|emb|CBY86249.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3047] Length = 411 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397 >gi|88810848|ref|ZP_01126105.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis Nb-231] gi|88792478|gb|EAR23588.1| ATP-dependent protease ATP-binding subunit [Nitrococcus mobilis Nb-231] Length = 419 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PRE+ LD+Y+IGQ+ AK+ +++A+ N ++R + L D EL NILL+GP+G GKT Sbjct: 71 PRELHDFLDQYVIGQEHAKKVLSVAVYNHYKRIGCCSALGDPELGKSNILLIGPSGSGKT 130 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 ++ LAR PF+ + T TE GYVG +V+ +IR LV N Sbjct: 131 LLAETLARRLAVPFLIADATALTETGYVGEDVDGLIRRLVQSCDN 175 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 107/248 (43%), Gaps = 61/248 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDS-GNGIGVSREGVQRDLL----- 276 D+D + R +Q +N GIV+LDE DK+ R + VS EGVQ+ LL Sbjct: 161 DVDGLIRRLVQSCDNDAQRASLGIVYLDEVDKLAVRHTVSRSRDVSGEGVQQALLRFMDS 220 Query: 277 ------PLVEGSSVSTKYGSINTDHILFIASGAFH------------------VSRPAD- 311 P G++ ++ ++T ILFI GAF V P Sbjct: 221 SVVRFAPRERGAARRPEWLEVDTRQILFICGGAFEGLAQLVERRRRGHGIGFTVDLPGPR 280 Query: 312 ------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELM 353 L+PE GR PV L L++ +LT+ + L+ QY +L+ Sbjct: 281 RCSNFLAYAEADDLIHYGLIPEFVGRLPVVSVLDPLDEDALVRVLTEPANALVRQYTKLL 340 Query: 354 KTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTV 412 +G L FT ++ ALA A+ + GAR L+TV+ERVL + + +E + + Sbjct: 341 AMDGCELHFTRGALHALAQEALARGT-----GARGLRTVIERVLLEPMYRLPRQREVQCL 395 Query: 413 VIDAEYVR 420 ID VR Sbjct: 396 TIDERAVR 403 >gi|148826641|ref|YP_001291394.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae PittEE] gi|148716801|gb|ABQ99011.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittEE] Length = 411 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVESVLLDTMYDLPSLENLQKVIVD 397 >gi|255321157|ref|ZP_05362323.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter radioresistens SK82] gi|255301711|gb|EET80962.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter radioresistens SK82] Length = 438 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGQKTEDKVEIAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T ++LFI GAF PADL Sbjct: 239 DTSNVLFICGGAFSGLEKIVQHRQEKGGIGFTAEVKSKDETKKLAELFRQVEPADLVKFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 299 LIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRAVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L++++E VL Sbjct: 359 KKALERNT-----GARGLRSILENVL 379 >gi|283455720|ref|YP_003360284.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium dentium Bd1] gi|283102354|gb|ADB09460.1| clpX ATP-dependent Clp protease ATP-binding subunit clpX [Bifidobacterium dentium Bd1] Length = 440 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 142/325 (43%), Gaps = 91/325 (28%) Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 SD D++VA SN + G VG L++ +KVM P ++ Sbjct: 119 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 159 Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268 D + D++TV + IQ + GIV++DE DKI AR SG ++R Sbjct: 160 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 218 Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304 EGVQ+ LL ++EG+ S I+T ILFI GAF Sbjct: 219 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 278 Query: 305 ---------------H-------VSRPA-------DLLPEIQGRFPVRVHLKSLNKSDFR 335 H ++R + LLPE GR PV L+ L + D Sbjct: 279 RLGARESGFGAAWHDHEVPKRELLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 338 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT E+ L+ QY++L +G+ L FTE+++ +A ++ + GAR L++++E+ Sbjct: 339 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 393 Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419 LED F L + + V++DA V Sbjct: 394 TLEDTMFQLPSLDDVSEVIVDAASV 418 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50 P +I + LD Y++GQ+ AKR +++A+ N ++R + A+L D + Sbjct: 67 PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 126 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ A Sbjct: 127 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 186 >gi|297568326|ref|YP_003689670.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924241|gb|ADH85051.1| ATPase AAA-2 domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 594 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 9/123 (7%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKN 55 F+ +P E+++ LD+Y++GQ++AK +A + + R + + + N Sbjct: 65 FDLAPEELIAHLDQYVVGQEEAKAILATKICTHFNRISRSLSRPGGEAGSGRNVGRIKNN 124 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115 +LL+GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE +IRDLV A N + Sbjct: 125 VLLIGPTGVGKTYLIKLIAQHIGVPFVKGDATKFSETGYVGGDVEDLIRDLVREADNDLE 184 Query: 116 ESR 118 +R Sbjct: 185 RAR 187 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 117/295 (39%), Gaps = 84/295 (28%) Query: 182 PGGASVGILNLSELFSKVM-----GSGRKKKIRMSVQKCYPELMRDESDRLI-------D 229 PGG + N+ + + V+ G G+ I++ Q ++ ++ + D Sbjct: 108 PGGEAGSGRNVGRIKNNVLLIGPTGVGKTYLIKLIAQHIGVPFVKGDATKFSETGYVGGD 167 Query: 230 MDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSS 283 ++ + RD ++ +N +GIV+LDE DKI G+ VSR GVQR LL +E + Sbjct: 168 VEDLIRDLVREADNDLERARFGIVYLDEVDKIAGGVDRRGLDVSRSGVQRALLKPMEETE 227 Query: 284 VSTKY----------------------GSINTDHILFIASGAFH---------------- 305 V K SINT HILFI SGAF Sbjct: 228 VEMKVPHDPIAMMEAVEHYRLTGKRQRKSINTRHILFIMSGAFSGLDEIIGRRLQQRSIG 287 Query: 306 ------------------VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 +R DL+ E GR PV L L++ D IL+ Sbjct: 288 FENTVAAAAPARPGALMARARAEDLVEYGFESEFIGRLPVLAVLSELSEDDLYEILSSPN 347 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 S +++ K+ + GI L F ED+ ST GAR L +VMERVL Sbjct: 348 SAVVVGKKQDFRAYGIELRF-EDAALRKLAALAAREST----GARALVSVMERVL 397 >gi|193216008|ref|YP_001997207.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroherpeton thalassium ATCC 35110] gi|226706580|sp|B3QWK0|CLPX_CHLT3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|193089485|gb|ACF14760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chloroherpeton thalassium ATCC 35110] Length = 431 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P EI EL++Y++GQ+ AK+A+A+A+ N ++R + L +E + NILL+GPTG Sbjct: 75 PTEIRDELNKYVVGQERAKKALAVAVYNHYKRIESQEWLLEEDDVVIEKSNILLIGPTGT 134 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA + PF V+ T TE GYVG +VE I+ L+ A Sbjct: 135 GKTLLAQTLANILDVPFTIVDATSLTEAGYVGDDVESILARLLQAA 180 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 190 GIIYIDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGTVAGVPPKGGRKHPEQHLI 247 Query: 290 SINTDHILFIASGAFH-----VSR-----------------------------PADL--- 312 ++NT +ILFI GAF +SR P DL Sbjct: 248 NVNTKNILFICGGAFEGLEKVISRRLAQNAMGFGTAITAASEKESIELISKVTPEDLYQF 307 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR P L LNK + IL + ++ + QYK+L + E + L F D++D + Sbjct: 308 GLIPEFIGRMPFIATLDPLNKEALKNILIEPKNAITKQYKKLFEMENVELIFDTDALDLV 367 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 D AV + GAR L++V+E V+ +I F ++ E KT +I E + Sbjct: 368 VDTAVKRGT-----GARALRSVLEEVMLNIMFDLPNMNEVKTCIITKECI 412 >gi|289178844|gb|ADC86090.1| ClpX [Bifidobacterium animalis subsp. lactis BB-12] Length = 460 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 60/230 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKYGS--------- 290 +GIV++DE DKI AR SG+ ++R EGVQ+ LL ++EG+ V Sbjct: 217 HGIVYIDEVDKI-ARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHVPVDGAHRHKDGET 275 Query: 291 --INTDHILFIASGAFH-----VSR----------------PAD---------------- 311 ++T ILFI GAF VSR P D Sbjct: 276 VELDTSDILFICGGAFVGLDEIVSRRLGRHESGFGASWRVNPIDEHEIYRQVNADDLAEF 335 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 LLPE GR PV L L D + +LT + L+ QY++L +G+ L FT+ +++A+ Sbjct: 336 GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTNALLKQYQKLFSVDGVTLTFTDAAVEAI 395 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A A+ +GAR L++++E +LE+ F ++ + T VV++A+ V Sbjct: 396 ASTALERG-----VGARGLRSIIESILEETMFELPNMDDVTEVVVNADCV 440 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 58/236 (24%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------------LPADLRDELM 52 P +I LD+Y+IGQ DAKR +++A+ N ++R Q L R L Sbjct: 83 PSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSILD 142 Query: 53 P--------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 P NILL+GPTGVGKT +++ LA+ PFI V+ T TE GYVG +VE ++ Sbjct: 143 PLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVLS 202 Query: 105 DLVDVAINIVRESRR-----DEV--------------REQASINAEERILDALVGKTATS 145 L+ A V +R DEV R+ + ++ +L L G Sbjct: 203 RLLQAADGDVDRARHGIVYIDEVDKIARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHV 262 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201 R K DGE E+D +SDI I GGA VG L E+ S+ +G Sbjct: 263 PVDGAHRHK--DGETV--ELD------TSDI--LFICGGAFVG---LDEIVSRRLG 303 >gi|212704617|ref|ZP_03312745.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098] gi|212672016|gb|EEB32499.1| hypothetical protein DESPIG_02680 [Desulfovibrio piger ATCC 29098] Length = 425 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 SP+EI + LD Y+IGQ +AK+ +++A+ N ++R L D EL NILLVGP+G Sbjct: 64 LSPQEIKARLDEYVIGQTEAKKILSVAVHNHYKRVFFADALGDDVELEKSNILLVGPSGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 169 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 179 GIIYIDEIDKISRKSDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF +P DL Sbjct: 239 DTSNILFIVGGAFVGLDKIVGSRMSGSSMGFGAQVCSKKEMPLGELLEKIQPQDLVKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ H+ L+++D ILT+ ++ L+ QY++L + + + L FT +++ A+A Sbjct: 299 IPEFVGRIPIITHVDDLDEADLVRILTEPKNALVRQYQKLFELDHVQLRFTPNALKAIAA 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ VMER + DI F Sbjct: 359 RAIERKT-----GARGLRNVMERTMLDIMF 383 >gi|125717923|ref|YP_001035056.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus sanguinis SK36] gi|323351645|ref|ZP_08087299.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis VMC66] gi|166215215|sp|A3CMV1|CLPX_STRSV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|125497840|gb|ABN44506.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Streptococcus sanguinis SK36] gi|322122131|gb|EFX93857.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis VMC66] gi|324991227|gb|EGC23161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK353] gi|324992983|gb|EGC24903.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK405] gi|324995708|gb|EGC27620.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK678] gi|325687395|gb|EGD29416.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK72] gi|325689773|gb|EGD31777.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK115] gi|325694581|gb|EGD36490.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK150] gi|325696427|gb|EGD38317.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK160] gi|327462279|gb|EGF08606.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1] gi|327470116|gb|EGF15580.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK330] gi|327489632|gb|EGF21424.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1058] gi|328946144|gb|EGG40289.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1087] gi|332361329|gb|EGJ39133.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1056] Length = 409 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D ++P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDSSYMQEIISEDVQKFGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + LI QY+ L+ + + L+F ED++ +A+ A Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380 >gi|16272655|ref|NP_438873.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae Rd KW20] gi|68249291|ref|YP_248403.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae 86-028NP] gi|145635953|ref|ZP_01791638.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] gi|260581527|ref|ZP_05849335.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae RdAW] gi|319897850|ref|YP_004136047.1| ATP-dependent clp protease ATP-binding subunit clpx [Haemophilus influenzae F3031] gi|329122526|ref|ZP_08251110.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus aegyptius ATCC 11116] gi|1168980|sp|P44838|CLPX_HAEIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus influenzae Rd KW20] gi|68057490|gb|AAX87743.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae 86-028NP] gi|145266786|gb|EDK06805.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittAA] gi|260091825|gb|EEW75780.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haemophilus influenzae RdAW] gi|317433356|emb|CBY81735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haemophilus influenzae F3031] gi|327473155|gb|EGF18578.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus aegyptius ATCC 11116] Length = 411 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397 >gi|302206718|gb|ADL11060.1| ATP-dependent Clp protease ATP-binding subunit clpX [Corynebacterium pseudotuberculosis C231] Length = 428 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58 P EI + LD+Y+IGQ DAKR +++A+ N ++R + D EL NIL+ Sbjct: 67 PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 126 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V+ ++ Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 186 Query: 119 R 119 R Sbjct: 187 R 187 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312 +T +ILFI +GAF S+ P DL Sbjct: 248 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 307 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L++ +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD Sbjct: 308 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVR 420 +A+ + GAR L+ +ME +L + + D ++ VV + A VR Sbjct: 368 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVVTVTAASVR 411 >gi|254582589|ref|XP_002499026.1| ZYRO0E01826p [Zygosaccharomyces rouxii] gi|238942600|emb|CAR30771.1| ZYRO0E01826p [Zygosaccharomyces rouxii] Length = 504 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 106/458 (23%), Positives = 192/458 (41%), Gaps = 118/458 (25%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40 +PR I + LD YI+GQ +K+ +++A+ N + R Sbjct: 35 TPRNIKAHLDDYIVGQDKSKKVLSVAVYNHYLRNHDKSRKSELQKARTLIWEETQRREKE 94 Query: 41 --------------------QQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAG 78 QQL A D+L+ N++++GP+G GKT ++ LA++ Sbjct: 95 RQDKLGYESSESKAGLKNLQQQLLAHPDDDLVLSKSNLMMIGPSGSGKTLMATTLAKMLD 154 Query: 79 APFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINIVRESRRDEVREQASINAEERILDA 137 P + T+ T+ GY+G +VE I R LV+ ++ + R V ++ +D Sbjct: 155 VPIAITDCTQLTQAGYIGDSVEVCIERLLVNADFDVSKAERGIIVLDE---------VDK 205 Query: 138 LVGKTATSNTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGIL 190 L A T++V + K+ +G + + V + + +N ++ Sbjct: 206 LAKPAANIGTKDVSGEGVQQALLKIIEGHNVEVTVKRPVKQGTDNKNNQTAAKKDETFVI 265 Query: 191 NLSELFSKVMGS--GRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVF 248 + S + +MG+ G K+I + R + DR +D +DS + +E + F Sbjct: 266 DTSNILFMIMGAFVGLDKRI----------VKRVKGDRGLDESKEEKDSKEEIEK--LRF 313 Query: 249 LDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSR 308 + ++I D GNG +E + P TD I F Sbjct: 314 SNTIEQI---DLGNG---KKETALNLVTP---------------TDLISF---------- 342 Query: 309 PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 L+PE+ GR P+ L+ L + D IL + ++ L+ QY+ + K G+ L TE ++ Sbjct: 343 --GLIPELIGRVPIITALQPLERDDLYHILKEPKNALLEQYRYIFKQFGVQLCITEKALQ 400 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 +A A+ + GAR L+ +MER+L ++++ D Sbjct: 401 RVAQFALREGT-----GARGLRGIMERLLLNVNYECPD 433 >gi|327460433|gb|EGF06770.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1057] gi|327474152|gb|EGF19562.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK408] gi|332360699|gb|EGJ38508.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK49] gi|332360755|gb|EGJ38563.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK355] Length = 409 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D ++P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDGSYMQEIISEDVQKFGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + LI QY+ L+ + + L+F ED++ +A+ A Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380 >gi|323451659|gb|EGB07535.1| hypothetical protein AURANDRAFT_64611 [Aureococcus anophagefferens] Length = 1035 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 24/172 (13%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVG 60 F +P EI LD ++GQ AKRA+A+A+ + R + P KN+LL+G Sbjct: 325 FRMTPAEIKRALDLEVVGQHAAKRAIAVAVAEHYGHARRCLEDPTRKDATWHKKNLLLLG 384 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA--------IN 112 P+G GKT + R LA++ A ++K + TKF+ GYVGR+V+ ++ LVD A Sbjct: 385 PSGCGKTQLCRALAKVVDAAYVKADATKFSATGYVGRDVDDVVAQLVDAAGDDREAAEFG 444 Query: 113 IVRESRRDEVREQASINAEERILDALVGKTATSNTREV---FRKKLRDGEIS 161 +V D+V E+ L+G A+ NTR+V K + D E++ Sbjct: 445 VVHVDEIDKVCERPG---------GLLGGGASVNTRDVQTSLLKLMEDAELA 487 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 43/230 (18%) Query: 244 YGIVFLDEFDKIVARDS---GNGIGVSREGVQRDLLPLVE---------GSSVSTKYG-- 289 +G+V +DE DK+ R G G V+ VQ LL L+E G VS + G Sbjct: 443 FGVVHVDEIDKVCERPGGLLGGGASVNTRDVQTSLLKLMEDAELAVGNKGPPVSVRAGAK 502 Query: 290 ----SINTDHILFIASGAF----------HVSRP-------ADLLPEIQGRFPVRVHLKS 328 + +T +L+I SG F + P + L+ E GR PVR L Sbjct: 503 PASATFSTKFVLWIFSGTFLPLLDRLAREGAAGPSARDLVESGLIHEFVGRVPVRCALDP 562 Query: 329 LNKSDFRLIL-TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L+ D IL D + + Q K +T I L +D+++A+A+ A+ +GAR Sbjct: 563 LSADDLVSILAADGAMSPLHQQKAYFETYDIELTVGDDALEAIAERAL-----AHGLGAR 617 Query: 388 RLQTVMERVLEDISFSASDLQEKTVVIDA--EYVRLHIGDFPSETDMYHF 435 L + ++ VL +F + +DA + V+ P+ + +H Sbjct: 618 ALVSELDAVLRGFAFHLPSADADRLHLDAALDVVKRLCKTDPATVEHFHI 667 >gi|145628435|ref|ZP_01784236.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] gi|144980210|gb|EDJ89869.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.1-21] Length = 396 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 59/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNATVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A A+ + GAR L++++E VL D + L+ Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLE 389 >gi|145223178|ref|YP_001133856.1| ATP-dependent protease ATP-binding subunit [Mycobacterium gilvum PYR-GCK] gi|315443636|ref|YP_004076515.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium sp. Spyr1] gi|189044140|sp|A4T2N8|CLPX_MYCGI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145215664|gb|ABP45068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium gilvum PYR-GCK] gi|315261939|gb|ADT98680.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium sp. Spyr1] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIRDFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRAEPVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVHSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+F ED+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFAEDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|238898002|ref|YP_002923682.1| ATPase, chaperone subunit of serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465760|gb|ACQ67534.1| ATPase, chaperone subunit of serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 436 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 4/102 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R L + D EL NILL+GPTG G Sbjct: 78 TPHQIRAHLDDYVIGQEAAKKVLSVAVYNHYKR--LSHSIPDGVELGKSNILLIGPTGSG 135 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 136 KTLLAETLARFLNVPFTIADATVLTEAGYVGEDVENIIQKLL 177 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 95/234 (40%), Gaps = 69/234 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 190 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 249 Query: 292 NTDHILFIASGAFHVSRPADL--------------------------------------- 312 +T ILFI GAF ADL Sbjct: 250 DTSKILFICGGAF-----ADLNKVIEQRLNTGTGIGFNATVKGAREKTNEDKILSQVETE 304 Query: 313 -------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 +PE GR PV L LN+ IL ++ L QY+ L EG+ L+F + Sbjct: 305 DLVKFGLIPEFIGRLPVIAVLDQLNEEALIQILKAPKNALTKQYQALFHLEGVELEFHYN 364 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ A+A A+ V GAR L++++E L D + + + V+ E V Sbjct: 365 ALKAIAKKAL-----VRKTGARGLRSIVENTLLDTMYDLPSTENVSKVVVNESV 413 >gi|332798602|ref|YP_004460101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Tepidanaerobacter sp. Re1] gi|332696337|gb|AEE90794.1| ATP-dependent Clp protease ATP-binding subunit clpX [Tepidanaerobacter sp. Re1] Length = 421 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD+Y++GQ+ AK+ +++A+ N ++R + D EL NI+++GPTG GKT Sbjct: 64 PHEIKDILDQYVVGQEQAKKTLSVAVYNHYKRINYQNKIDDVELQKSNIVMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 99/211 (46%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 236 DTTNILFICGGAFEGIGDIIQNRIGKKSIGFEAEIQSQEQKNIGEILKHL-MPEDLLKYG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L +L+++ IL + ++ L+ QY++L + + L+FT+D++ +A Sbjct: 295 MIPEFVGRLPVIVTLSALDENALIKILKEPKNALVKQYQKLFEMDNSQLEFTDDALMVIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E V+ DI + Sbjct: 355 QEAIRRKT-----GARGLRAILEEVMLDIMY 380 >gi|229845548|ref|ZP_04465676.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] gi|229811564|gb|EEP47265.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 6P18H1] Length = 411 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 99/227 (43%), Gaps = 59/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 A A+ + GAR L++++E VL D + L+ VI E Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVGE 398 >gi|145633844|ref|ZP_01789566.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145637966|ref|ZP_01793605.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|148827883|ref|YP_001292636.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus influenzae PittGG] gi|144985286|gb|EDJ92125.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 3655] gi|145268832|gb|EDK08796.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittHH] gi|148719125|gb|ABR00253.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae PittGG] Length = 411 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397 >gi|114567170|ref|YP_754324.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338105|gb|ABI68953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 416 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 P++I LD Y+IGQ AK+++A+A+ N ++R L L D EL NI+++GPTG GK Sbjct: 63 KPQDIREILDDYVIGQDRAKKSLAVAVYNHYKRINLGMKLDDVELQKSNIMMLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKTDNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF ++ P DLL Sbjct: 236 DTSNILFICGGAFEGIDKIIENRVGQKVMGFGADIKSREEKKIGEILNMILPQDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L++L+ ILT+ ++ L+ QYK+L + +G+ L+F ED++ A+AD Sbjct: 296 IPEFVGRVPIIVTLEALDMDALISILTEPKNALVKQYKKLFELDGVDLEFKEDALQAIAD 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ ++ + Sbjct: 356 EALRRNT-----GARGLRAIIEDIMLEVMY 380 >gi|332366632|gb|EGJ44375.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis SK1059] Length = 409 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PQELLNILNHYVIGQDRAKRALAVAVYNHYKRINY-HDSREEEDVELQKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 GKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 177 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF +R D ++P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDGSYMQEIISEDVQKFGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + LI QY+ L+ + + L+F E+++ +A+ A Sbjct: 298 ELIGRLPVFAALEQLTVDDLVRILKEPRNALIKQYQALLSYDDVKLEFDEEALQEIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 358 IERKT-----GARGLRSIIEETMMDVMF 380 >gi|183601400|ref|ZP_02962770.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium animalis subsp. lactis HN019] gi|219683457|ref|YP_002469840.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium animalis subsp. lactis AD011] gi|241191100|ref|YP_002968494.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196506|ref|YP_002970061.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219006|gb|EDT89647.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium animalis subsp. lactis HN019] gi|219621107|gb|ACL29264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium animalis subsp. lactis AD011] gi|240249492|gb|ACS46432.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251060|gb|ACS47999.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794089|gb|ADG33624.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium animalis subsp. lactis V9] Length = 442 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 60/230 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST--------KYGS- 290 +GIV++DE DKI AR SG+ ++R EGVQ+ LL ++EG+ V K G Sbjct: 199 HGIVYIDEVDKI-ARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHVPVDGAHRHKDGET 257 Query: 291 --INTDHILFIASGAFH-----VSR----------------PAD---------------- 311 ++T ILFI GAF VSR P D Sbjct: 258 VELDTSDILFICGGAFVGLDEIVSRRLGRHESGFGASWRVNPIDEHEIYRQVNADDLAEF 317 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 LLPE GR PV L L D + +LT + L+ QY++L +G+ L FT+ +++A+ Sbjct: 318 GLLPEFIGRLPVVCTLGELTVDDLKDVLTKPTNALLKQYQKLFSVDGVTLTFTDAAVEAI 377 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A A+ +GAR L++++E +LE+ F ++ + T VV++A+ V Sbjct: 378 ASTALERG-----VGARGLRSIIESILEETMFELPNMDDVTEVVVNADCV 422 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 58/236 (24%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------------LPADLRDELM 52 P +I LD+Y+IGQ DAKR +++A+ N ++R Q L R L Sbjct: 65 PSQIRDVLDQYVIGQNDAKRTLSVAVYNHFKRAQIERHDANAHRQFEQSRLADSTRSILD 124 Query: 53 P--------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 P NILL+GPTGVGKT +++ LA+ PFI V+ T TE GYVG +VE ++ Sbjct: 125 PLDEVSVAKSNILLLGPTGVGKTYLAQTLAKAMQVPFIIVDATSITEAGYVGDDVEMVLS 184 Query: 105 DLVDVAINIVRESRR-----DEV--------------REQASINAEERILDALVGKTATS 145 L+ A V +R DEV R+ + ++ +L L G Sbjct: 185 RLLQAADGDVDRARHGIVYIDEVDKIARKSGDNTSMTRDVSGEGVQQALLKILEGTLVHV 244 Query: 146 NTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201 R K DGE E+D +SDI I GGA VG L E+ S+ +G Sbjct: 245 PVDGAHRHK--DGETV--ELD------TSDI--LFICGGAFVG---LDEIVSRRLG 285 >gi|153951402|ref|YP_001398676.1| ATP-dependent protease ATP-binding subunit [Campylobacter jejuni subsp. doylei 269.97] gi|152938848|gb|ABS43589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. doylei 269.97] Length = 406 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 4/108 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 59 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 117 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 118 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 165 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 175 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 234 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 235 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ +I QY++L +G+ L F ED++ A+A +A+ Sbjct: 295 IGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALE 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 355 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 393 >gi|89073231|ref|ZP_01159761.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] gi|89050941|gb|EAR56405.1| ATP-dependent protease ATP-binding subunit [Photobacterium sp. SKA34] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P+EI + LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQTDTLSDLFEKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ E + L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A++ + GAR L++++E VL D + Q VVID ++ Sbjct: 361 ARKAMDRKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406 >gi|86608810|ref|YP_477572.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502535|sp|Q2JLU2|CLPX_SYNJB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|86557352|gb|ABD02309.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. JA-2-3B'a(2-13)] Length = 448 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 P+EI+ LD+Y+IGQ+ AK+ +++A+ N ++R A+ EL NIL++ Sbjct: 82 PQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILII 141 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++ LAR+ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 GPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQR 201 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF-------------------------HVSR------------PADLL- 313 +T +ILFI GAF VSR P DL+ Sbjct: 262 DTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLSVSREQRMANALKALEPEDLIK 321 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV L L++ ILT ++ ++ Q ++L++ +G+ L+F +I A Sbjct: 322 YGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAIAA 381 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A + GAR L+ ++E ++ D+ + A ++ K + I AE V Sbjct: 382 IAKEAYRRKT-----GARALRAIVEELMLDVMYEAPSRRDLKYIRITAEMV 427 >gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio coralliilyticus ATCC BAA-450] gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio coralliilyticus ATCC BAA-450] Length = 427 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 14/107 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PREI LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 68 PREIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDSELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL + + + + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMNDVSKVVID 401 >gi|259909253|ref|YP_002649609.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae Ep1/96] gi|224964875|emb|CAX56397.1| ATP-dependent specificity component of ClpP serine protease, chaperone [Erwinia pyrifoliae Ep1/96] gi|310766843|gb|ADP11793.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp. Ejp617] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|145642382|ref|ZP_01797942.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae R3021] gi|145272925|gb|EDK12811.1| ATP-dependent protease ATP-binding subunit [Haemophilus influenzae 22.4-21] Length = 411 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + + D EL NILL+GPTG GK Sbjct: 64 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ S+ + G + Sbjct: 177 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKL 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKKQSLSELFRQVEPDDLMKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ LI QY+ L E + LDFT +++ A+ Sbjct: 297 GLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALKAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ + V++D Sbjct: 357 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSLENLQKVIVD 397 >gi|291460375|ref|ZP_06599765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium sp. oral taxon 078 str. F0262] gi|291416942|gb|EFE90661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Oribacterium sp. oral taxon 078 str. F0262] Length = 438 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 3/105 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P+EI LD Y+IGQ +AK+ +++A+ N ++R + + ++D E+ NILL+G TG G Sbjct: 64 LKPKEIKGFLDEYVIGQDEAKKVLSVAVYNHYKR--ISSRIQDIEVQKSNILLIGATGTG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ G PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTYLAQTLAKILGVPFAIADATALTEAGYVGEDVENILLKLIQAA 166 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 175 YGIIYIDEVDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELIQ 234 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 INT +ILFI GAF +P DL Sbjct: 235 INTKNILFICGGAFDGLEKIIEKRIASGSIGFGAEIVEKNRNSYDELLKKVQPEDLVKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ V L+S + + ILT+ ++ LI QY+ L + +G+ L FTED+I A+A Sbjct: 295 LIPEFIGRVPIDVELESHDVESLKRILTEPKNALIRQYQRLFELDGVELSFTEDAIRAVA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ + GAR L+++ME ++ + + Sbjct: 355 EKAIQRKT-----GARGLRSIMEDIMMGLMY 380 >gi|192361200|ref|YP_001982471.1| ATP-dependent protease ATP-binding subunit ClpX [Cellvibrio japonicus Ueda107] gi|238692439|sp|B3PHK5|CLPX_CELJU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|190687365|gb|ACE85043.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cellvibrio japonicus Ueda107] Length = 433 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 5/104 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRD----ELMPKNILLVGPTG 63 P EI + LD+Y+IGQ+ AK+ +A+A+ N ++R + +D EL NILLVGPTG Sbjct: 70 PHEISAILDQYVIGQKRAKKVLAVAVYNHYKRLRFGDKTAKDKEPVELGKSNILLVGPTG 129 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 130 SGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 173 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 186 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 245 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H P DL Sbjct: 246 DTSNILFICGGAFAGLDKVIRDRSEKGGIGFAAEVKSKDDKRNFGETLHDLEPEDLVRYG 305 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L+K+ ILT+ ++ L QY +L + EG+ +DF D++DA+A Sbjct: 306 LIPEFVGRLPVIATLDELDKAALIQILTEPKNALTKQYGKLFEMEGVQIDFRPDALDAVA 365 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ + GAR L+++ME VL D + Sbjct: 366 ERALERKT-----GARGLRSIMESVLLDTMY 391 >gi|120404990|ref|YP_954819.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium vanbaalenii PYR-1] gi|166214792|sp|A1TCB3|CLPX_MYCVP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119957808|gb|ABM14813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium vanbaalenii PYR-1] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRSEPVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGLGFGAEVKSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL+ ++ L+ QY L + +G+ L+F ED+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVQILSQPKNALVKQYTRLFEMDGVELEFAEDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|282866709|ref|ZP_06275749.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. ACTE] gi|282558408|gb|EFB63970.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. ACTE] Length = 431 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RD---ELMPKNILLVGPT 62 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q + RD EL NILL+GPT Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGANRDDAIELAKSNILLLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 241 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 301 IPEFIGRLPVLTSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI + VR ++ Sbjct: 361 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 407 >gi|171463606|ref|YP_001797719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226706593|sp|B1XUS8|CLPX_POLNS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|171193144|gb|ACB44105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 453 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 29/141 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD----------------- 49 +P +I LD+Y+IGQ AK+ +A+A+ N ++R Q LP ++ Sbjct: 67 TPHQIRKNLDQYVIGQDHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEGSDKKES 126 Query: 50 -----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 EL NILL+GPTG GKT +++ LAR+ PF+ + T TE GYVG + Sbjct: 127 KLPAKAMVDDVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGED 186 Query: 99 VEQIIRDLVDVAINIVRESRR 119 VE II+ L+ V +++R Sbjct: 187 VENIIQKLLQACDYNVEKAQR 207 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 208 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFLQV 267 Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313 +T +ILFI GAF VS P DL+ Sbjct: 268 DTTNILFICGGAFDGLEKVIQQRTAKTGIGFNATVPGKDDRGVSDLLIEVEPEDLIKFGL 327 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ ++ L+ QY+ L+ EG L+ +++ A+A Sbjct: 328 IPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQALLTMEGSELEVRREALSAIAK 387 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D+ + L+ + V+ID Sbjct: 388 KAIARKT-----GARGLRSILEGSLMDVMYDLPSLKNVQKVIID 426 >gi|38234360|ref|NP_940127.1| ATP-dependent protease ATP-binding subunit [Corynebacterium diphtheriae NCTC 13129] gi|61211524|sp|Q6NFU7|CLPX_CORDI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|38200623|emb|CAE50319.1| Putative ATPase [Corynebacterium diphtheriae] Length = 430 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59 P +I + LD+Y+IGQ DAKR +++A+ N ++R + ++ EL NIL++ Sbjct: 67 PSQISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRTTHKRASEEETELQKSNILML 126 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V+ ++R Sbjct: 127 GPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQR 186 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 187 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 246 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI +GAF ++ AD L Sbjct: 247 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTTKADTDAVDVFRDVLPEDLVKFGL 306 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L+++ +LT+ ++L+ QY+ L + + L+F +++ A+AD Sbjct: 307 IPEFIGRLPIVATVNNLDQASLVKVLTEPRNSLVKQYQRLFDMDRVDLEFDPEALQAIAD 366 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A++ + GAR L+ +ME +L + + D ++ VV Sbjct: 367 LAIDRGT-----GARGLRAIMEELLVPVMYDIPDREDVAVV 402 >gi|85707625|ref|ZP_01038691.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] gi|85689159|gb|EAQ29162.1| ATP-dependent protease ATP-binding subunit [Erythrobacter sp. NAP1] Length = 420 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + L+ Y+IGQ AKR +++A+ N ++R + EL NILLVGPTG GK Sbjct: 66 TPSEIFATLNDYVIGQNSAKRNLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE II L+ Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLL 166 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 65/247 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313 ++T +ILFI GAF HV S P DLL Sbjct: 237 QVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPEKRKVGELLEKSEPEDLLKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+ IL + ++ L+ QY++L + E + L FT++++ A+ Sbjct: 297 GLIPEFVGRLPVIATLHDLDVDALVTILKEPKNALVKQYRKLFELEDVDLTFTDEALVAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV-------RLH 422 A+ A+ + GAR L++++E +L D F D++ +VID + V R+H Sbjct: 357 AERAIKRKT-----GARGLRSIVEGILLDTMFDLPDMEGVAEIVIDQDVVEGKKDPIRVH 411 Query: 423 IGDFPSE 429 G+ E Sbjct: 412 GGEAKEE 418 >gi|256850970|ref|ZP_05556359.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 27-2-CHN] gi|260661184|ref|ZP_05862098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 115-3-CHN] gi|282934115|ref|ZP_06339393.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 208-1] gi|297205852|ref|ZP_06923247.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus jensenii JV-V16] gi|256616032|gb|EEU21220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 27-2-CHN] gi|260548121|gb|EEX24097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 115-3-CHN] gi|281301729|gb|EFA93995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus jensenii 208-1] gi|297148978|gb|EFH29276.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus jensenii JV-V16] Length = 427 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 65 PVEIKKQLDEYVVGQDRAKKVLSVAVYNHYKRINQMDIDDSTELQKSNIALIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 YLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 167 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 58/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIKI 236 Query: 292 NTDHILFIASGAF-------------------------HVSRPAD--------------- 311 +T +ILFI GAF AD Sbjct: 237 DTKNILFIVGGAFDGIEGIVKSRLGKKTIGFGAESKFDEFDHDADSWNKYLTTGDLVKFG 296 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L K+D ILT+ ++ L+ QY++L + + + L F++ +++A++ Sbjct: 297 LIPEFIGRIPVISTLDKLQKADLIRILTEPKNALVKQYQKLFEIDKVNLHFSDGALEAIS 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 + A+ N +GAR L+T++E + D ++ Sbjct: 357 EQALERN-----MGARGLRTIIENAMMDTMYT 383 >gi|114771110|ref|ZP_01448550.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] gi|114548392|gb|EAU51278.1| ATP-dependent protease ATP-binding subunit [alpha proteobacterium HTCC2255] Length = 420 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGK 66 +P +I LD Y+IGQ AKR +++A+ N ++R + EL NILLVGPTG GK Sbjct: 65 TPAKICQILDDYVIGQDVAKRVLSVAVHNHYKRLDHSDTNEEIELSKSNILLVGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARVIDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAER 177 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLKV 237 Query: 292 NTDHILFIASGAF------------------------HVSR----------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 238 DTTNILFICGGAFAGLDKIISQRGQGSGIGFGADVKDEESRGIGEIFSEMEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ IL++ ++ L+ QY+ L E L FT++++ A+A Sbjct: 298 IPEFVGRLPVLATLTDLDEDALVTILSEPKNALVKQYQTLFSLENTNLTFTDEALKAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L++++E +L + F L+ Sbjct: 358 RAIARKT-----GARGLRSILEDILLNTMFELPGLK 388 >gi|328957599|ref|YP_004374985.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp. 17-4] gi|328673923|gb|AEB29969.1| ATP-dependent protease ATP-binding subunit ClpX [Carnobacterium sp. 17-4] Length = 415 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI L+ Y+IGQ+ AK+++++A+ N ++R Q+ + +D EL NI L+GPTG G Sbjct: 64 PHEIRGILNDYVIGQEQAKKSLSVAVYNHYKRVNQMGGEEKDGIELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQSLARILNVPFAIADATSLTEAGYVGEDVENILLKLMQAA 168 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 178 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFIQL 237 Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314 +T +ILFI GAF P DLL P Sbjct: 238 DTSNILFIVGGAFDGIETIVKNRMGEKVIGFGSAKKKLDESQSVMQQIIPEDLLKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L + D ILT ++ L+ QYK+L+ + + L+F +DS+ +A A Sbjct: 298 EFIGRLPVMAALEKLTEDDLVHILTKPKNALVKQYKKLLALDEVELEFEDDSLTEIAKKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + N+ GAR L++++E ++ +I F Sbjct: 358 IERNT-----GARGLRSIIESIMLEIMF 380 >gi|283955251|ref|ZP_06372752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 414] gi|283793288|gb|EFC32056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter jejuni subsp. jejuni 414] Length = 407 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 4/108 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R A+L+D EL NILLVGPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKAELQDDDTELFKSNILLVGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDGKEENKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ ++ QY++L +G+ L F ED++ A+A +A+ Sbjct: 296 IGRLHVIASLNELNEEDMIRILTEPKNAIVKQYQKLFAIDGVNLKFEEDALRAIAQLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E V+ Sbjct: 356 RKT-----GARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVK 394 >gi|300780634|ref|ZP_07090489.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium genitalium ATCC 33030] gi|300533620|gb|EFK54680.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium genitalium ATCC 33030] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP------ADLRDE---LMPKNILLV 59 P EI S LD+Y+IGQ AKR +A+A+ N ++R + A RDE + NILL+ Sbjct: 67 PSEITSFLDQYVIGQDRAKRTLAVAVYNHYKRVRTEKSAASGARKRDEDVEIAKSNILLL 126 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 GPTGSGKTYLAQTLARMLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 177 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 57/214 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 187 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQL 246 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF +P DL Sbjct: 247 DTTNILFIVAGAFDGLDKVIAERVGKKGIGFGAEIDSAAEREEANMLAQVQPEDLVKFGL 306 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ +++L++ +LT+ +++L+ QY+ L +G L F + ++ A+A Sbjct: 307 IPEFIGRLPILAAVENLDEESMVRVLTEPKNSLVKQYQRLFNMDGAQLRFDDGALSAVAK 366 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 A + GAR L+ +ME +L I + D Sbjct: 367 KAAERGT-----GARGLRAIMEEILVPIMYDLPD 395 >gi|118469529|ref|YP_888934.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium smegmatis str. MC2 155] gi|166214787|sp|A0R196|CLPX_MYCS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|118170816|gb|ABK71712.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium smegmatis str. MC2 155] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVIGQDSAKRTLAVAVYNHYKRIQAGEKSRDSRSEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K+ IL++ ++ L+ QY L + +G+ L+FTE++++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKASLVKILSEPKNALVKQYVRLFEMDGVELEFTEEALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|167769422|ref|ZP_02441475.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM 17241] gi|167668390|gb|EDS12520.1| hypothetical protein ANACOL_00752 [Anaerotruncus colihominis DSM 17241] Length = 465 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI +LD Y+IGQ+ AK A+++A+ N ++R D+ D EL N+LL+GPTGVG Sbjct: 96 LKPHEIKEKLDEYVIGQERAKIALSVAVYNHYKRIYF-GDVGDVELSKTNVLLLGPTGVG 154 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 155 KTLLAQTLARMLNVPFAIADATTLTEAGYVGEDVENILLRLLQAA 199 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 209 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIQI 268 Query: 292 NTDHILFIASGAFH-----VSRPAD--------------------------------LLP 314 +T ILFI GAF + R D L+P Sbjct: 269 DTKDILFICGGAFEGIDKIIERRTDKSSLGFSSTLKNVKARDRLVQQVIPQDLVKFGLIP 328 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L++L++ ILT+ +++L+ QYK+L + + L F + +++A+AD A Sbjct: 329 ELVGRTPVLTALEALDRDALVRILTEPKNSLVRQYKQLFSLDNVELTFEDGALEAIADKA 388 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E L + + Sbjct: 389 IERKT-----GARGLRAILEETLGPLMY 411 >gi|313204334|ref|YP_004042991.1| ATP-dependent clp protease ATP-binding subunit clpx [Paludibacter propionicigenes WB4] gi|312443650|gb|ADQ80006.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Paludibacter propionicigenes WB4] Length = 410 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K ++ Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIAV 234 Query: 292 NTDHILFIASGAFH------VSR---------------------------PADL-----L 313 NT +ILF+ GAF SR P DL + Sbjct: 235 NTQNILFVCGGAFDGIEKKIASRLNTRVVGYNAAKEHEQIDKHNMLQYIAPQDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L+ L++S R ILT+ ++++I QY +L + I L+F E ++ + D Sbjct: 295 PEIIGRLPILTYLEPLDRSALRRILTEPKNSIIKQYTKLFAMDDIELNFDESVLEYIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L+++ E ++ D + EK + I Y + I Sbjct: 355 AIEFK-----LGARGLRSITETIMMDEMYEMPSKNEKKLTILLPYAQSKI 399 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ +AK+ +++A+ N ++R + A D E+ NI++VG TG GK Sbjct: 63 PTEIKEYLDQYVIGQNEAKKYLSVAVYNHYKRL-MQAKTSDDVEIEKSNIIMVGYTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ +A+ PF V+ T TE GYVG ++E I+ L+ VA V+ + R Sbjct: 122 TLLAKTIAKKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYDVKAAER 174 >gi|283479305|emb|CAY75221.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia pyrifoliae DSM 12163] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKXKSEKATEGELLAQVEPEXLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|323466767|gb|ADX70454.1| caseinolytic peptidase-like protein X [Lactobacillus helveticus H10] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI +LD+Y+I Q AK+ +++A+ N ++R Q+ D EL NI ++GPTG GKT Sbjct: 64 PMEIKKQLDQYVISQNRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 YLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 166 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF H++ ADL Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENDVDKIDADDWTRHLT-TADLVKFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ D +LT+ ++ L+ QYK+L+ +GI L FT+ ++ A+AD Sbjct: 295 IPEFIGRIPIITTLDKLSSEDLVRVLTEPKNALVKQYKKLLSLDGIDLKFTDGALKAIAD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ N +GAR L+T++E + DI + Sbjct: 355 LAIQRN-----MGARGLRTIIENSIMDIMY 379 >gi|325680665|ref|ZP_08160203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 8] gi|324107445|gb|EGC01723.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Ruminococcus albus 8] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 2/111 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66 P EI + LD Y++GQ +AK A+++A+ N ++R L D D E+ N+LL+GPTG GK Sbjct: 76 PAEIKAVLDEYVVGQDEAKIALSVAVYNHYKRILTLDDDFDDVEIQKSNVLLLGPTGTGK 135 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LARL PF + T TE GYVG +VE ++ L+ A V E+ Sbjct: 136 TLLAQTLARLLNVPFAIADATTLTEAGYVGDDVENVLTRLIQAANYNVEEA 186 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 56/229 (24%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG--------- 289 ++GI+++DE DKI + I VS EGVQ+ LL +VEG S+V + G Sbjct: 187 SHGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPHQEFI 246 Query: 290 SINTDHILFIASGAF-----------------------------HVSR---PADLL---- 313 I+T +ILFI GAF +V + P DL+ Sbjct: 247 QIDTKNILFICGGAFDGLEAVIKKRTDSSSMGFGGTVKNKSSDFNVLKKVVPHDLVKFGI 306 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++S ILT+ +++LI QY +L + + I + T D++ +A Sbjct: 307 VPELVGRLPVITVLDELDESALCKILTEPKNSLIKQYTKLFRLDDIDFEVTPDALTEIAK 366 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVR 420 V + + GAR L++V+ER+L + F A SD K + I AE VR Sbjct: 367 VTIEQKT-----GARGLRSVVERILTKLMFDAPSDSTIKGIKITAECVR 410 >gi|305665190|ref|YP_003861477.1| ATP-dependent protease ATP-binding subunit [Maribacter sp. HTCC2170] gi|88709942|gb|EAR02174.1| ATP-dependent protease ATP-binding subunit [Maribacter sp. HTCC2170] Length = 411 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAF-----------------HVSRPAD---------------------LL 313 NT++ILF+A GAF + + AD L+ Sbjct: 235 NTENILFVAGGAFDGIERAITKRLNMQAVGYSASKADESLDEDNILQYIIPKDLKEFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ R ILT+ ++ +I QY++L +GI T+ ++D + Sbjct: 295 PEIIGRLPVLTHMNPLDAKTLRAILTEPKNAIIKQYEKLFAMDGISFTITDQALDYIVKK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E + D F E + Y Sbjct: 355 AIEYK-----LGARGLRSLCEAIFTDAMFEMPSTGETEFKVSKPY 394 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD +IIGQ+ K+ +++A+ N ++R P D E+ NI++VG TG GK Sbjct: 62 PLEIKEFLDTFIIGQERTKKVMSVAVYNHYKRLLQPHSKEDDVEIQKSNIIMVGQTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 TLMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165 >gi|298372621|ref|ZP_06982611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes oral taxon 274 str. F0058] gi|298275525|gb|EFI17076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroidetes oral taxon 274 str. F0058] Length = 404 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 55/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V K + Sbjct: 172 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVLVPPQGGRKHPEQKMVEV 231 Query: 292 NTDHILFIASGAFH------VSR--------------------------PADL-----LP 314 NT +ILFI GAF SR P DL +P Sbjct: 232 NTKNILFICGGAFDGIEKRIASRLNTNVVGFRDKTSVTIDKSNIMQYISPQDLKAFGLIP 291 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 EI GR P+ +L+ L+++ + IL + ++++I QY++L + + L F E+ ID + D A Sbjct: 292 EIIGRLPILTYLEPLDRNALKRILVEPKNSIIKQYQKLFGMDNVELSFDEEVIDYVVDKA 351 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + +GAR L++++E ++ D+ F + + I EY + Sbjct: 352 IEYK-----LGARGLRSIVETIMIDVMFDIPSEHKDKLRIQLEYAK 392 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 PREI + LD+Y+IGQ +AK+ +++A+ N ++R QL D E+ NI++VG TG GKT Sbjct: 60 PREIKAFLDQYVIGQDEAKKFLSVAVYNHYKRISQLTDDNDVEIEKSNIIMVGATGTGKT 119 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+ PF V+ T TE GYVG ++E I+ L+ A Sbjct: 120 LLARTIAQKLHVPFTIVDATVLTEAGYVGEDIESILTRLLQAA 162 >gi|259909251|ref|YP_002649607.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia pyrifoliae Ep1/96] gi|224964873|emb|CAX56395.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia pyrifoliae Ep1/96] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKSKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|320530214|ref|ZP_08031284.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas artemidis F0399] gi|320137647|gb|EFW29559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas artemidis F0399] Length = 421 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ +AK+++++A+ N ++R D EL NIL++GPTG GK Sbjct: 64 PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGHGKNDDVELRKSNILMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T +ILFI GAF +S+ P DL+ Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAEVRSKKRVSVGESLSKVIPEDLMKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL+++ ILT+ ++ L+ Q++ L+ +G+ L F +D++ +A Sbjct: 297 IPEFIGRLPVVVTLSSLDEAAMVRILTEPKNALVKQFQRLLDMDGVRLTFEQDALHLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 A+ + GAR L+ ++E ++ ++ + +Q T Sbjct: 357 EALTHKT-----GARGLRAIIEGIMRNVMYEVPSIQGVTAC 392 >gi|171743307|ref|ZP_02919114.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC 27678] gi|171278921|gb|EDT46582.1| hypothetical protein BIFDEN_02438 [Bifidobacterium dentium ATCC 27678] Length = 438 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 142/325 (43%), Gaps = 91/325 (28%) Query: 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELM 220 SD D++VA SN + G VG L++ +KVM P ++ Sbjct: 117 SDPLADVQVAK-----SNILLLGPTGVGKTYLAQTLAKVMN--------------VPFVI 157 Query: 221 RDESDRLI------DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR 268 D + D++TV + IQ + GIV++DE DKI AR SG ++R Sbjct: 158 ADATTLTEAGYVGDDVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITR 216 Query: 269 ----EGVQRDLLPLVEGSSVSTKYGS-----------INTDHILFIASGAF--------- 304 EGVQ+ LL ++EG+ S I+T ILFI GAF Sbjct: 217 DVSGEGVQQALLKILEGTMASVPMEGTRKHREQETVQIDTRDILFICGGAFVGLDDIVAQ 276 Query: 305 ---------------H-------VSRPA-------DLLPEIQGRFPVRVHLKSLNKSDFR 335 H ++R + LLPE GR PV L+ L + D Sbjct: 277 RLGARESGFGAAWHDHEVPKRELLARASADDLADFGLLPEFIGRLPVVSVLEELTEDDLA 336 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 ILT E+ L+ QY++L +G+ L FTE+++ +A ++ + GAR L++++E+ Sbjct: 337 RILTQPENALVKQYQKLFAVDGVKLTFTEEAVRQIAATSIRRGT-----GARGLRSIIEK 391 Query: 396 VLEDISFSASDLQEKT-VVIDAEYV 419 LED F L + + V++DA V Sbjct: 392 TLEDTMFQLPSLDDVSEVIVDAASV 416 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 18/120 (15%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD--------------E 50 P +I + LD Y++GQ+ AKR +++A+ N ++R + A+L D + Sbjct: 65 PAQISAYLDGYVVGQEAAKRTLSVAVYNHYKRVNMEMRESAELADSATRRNQSDPLADVQ 124 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ A Sbjct: 125 VAKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 184 >gi|330446592|ref|ZP_08310244.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490783|dbj|GAA04741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P+EI + LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTNSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQADSLSNLFEKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ E + L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + Q VVID ++ Sbjct: 361 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406 >gi|227824396|ref|ZP_03989228.1| ATP-dependent Clp protease [Acidaminococcus sp. D21] gi|226904895|gb|EEH90813.1| ATP-dependent Clp protease [Acidaminococcus sp. D21] Length = 425 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+T P+EI LD Y+IGQ DAK A+++A+ N ++R D EL NIL++ Sbjct: 60 KITDLPKPKEIKKILDEYVIGQDDAKVALSVAVYNHYKRINYEQDHHSDVELQKSNILML 119 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 GPTGSGKTLLAQTLAKILQVPFAIADATSLTEAGYVGEDVENILLRLIQNA 170 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 180 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQELIQI 239 Query: 292 NTDHILFIASGAF----------------------------HVSRP-----------ADL 312 +T +ILFI GAF ++ P L Sbjct: 240 DTTNILFICGGAFAGLENVINARTGKKSMGFGAEIETQKEKEMANPFKKVLPEDFVKYGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L+++ ILT+ ++ L QY+ + + + LDF +D++ A+A Sbjct: 300 IPEFVGRLPVVVTLDQLDEAALVKILTEPKNALTKQYESFLAMDHVELDFDDDALKAIAH 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A+ + GAR L+ ++E +++++ + + D EK +V Sbjct: 360 EALARKA-----GARGLRAIIEGIMKNVMYEVPSRDDVEKCIV 397 >gi|72162591|ref|YP_290248.1| ATP-dependent protease ATP-binding subunit ClpX [Thermobifida fusca YX] gi|71916323|gb|AAZ56225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermobifida fusca YX] Length = 447 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-LRD---ELMPKNILLVGPTGV 64 PREI LD Y++GQ+ AK+A+++A+ N ++R + D RD E+ NILL+GPTG Sbjct: 87 PREIYEFLDSYVVGQEQAKKALSVAVYNHYKRIRSGGDRSRDDDVEIAKSNILLLGPTGS 146 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 147 GKTLLAQTLAKILKVPFAIADATALTEAGYVGEDVENILLKLIQAA 192 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 60/237 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 202 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 261 Query: 292 NTDHILFIASGAFH-------------------VSR---------------PADLL---- 313 +T ++LFI GAF V R P DLL Sbjct: 262 DTTNVLFICGGAFSGLEKIIEARTGRQGMGFNAVVRSKKELENSDPFRDVMPEDLLKFGM 321 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+++ ILT+ + L+ QY+ L + + + L FT+D+++A+AD Sbjct: 322 IPEFVGRLPVITSVHNLDRNALIRILTEPRNALVKQYQRLFELDNVELQFTQDALEAIAD 381 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428 A+ + GAR L+ ++E VL + + ++ V+I E V H+ +P+ Sbjct: 382 QAIMRGT-----GARGLRAIIEEVLLSVMYEVPSRKDVARVIITREAVLEHV--YPT 431 >gi|303239033|ref|ZP_07325563.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio cellulolyticus CD2] gi|302593371|gb|EFL63089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acetivibrio cellulolyticus CD2] Length = 431 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD+Y+IGQ+ AK+++++A+ N ++R + D++ EL NI+++GPTG G Sbjct: 64 PAEIKEILDQYVIGQESAKKSLSVAVYNHYKR--INTDIKGSDVELQKSNIIMLGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF H+ P DLL Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSMGFGAKIESQKTIDMGEILKHI-YPQDLLKFG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L+SL+K+ ILT+ ++ L+ QY++L + + + L+F +++A+A Sbjct: 295 LIPEFVGRLPVMVSLQSLDKAALIQILTEPKNALVKQYQKLFEMDEVELEFETGALEAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + ++ N+ GAR L+ ++E ++ ++ + Sbjct: 355 EKSIERNT-----GARGLRAIIEEIMLEVMY 380 >gi|118602250|ref|YP_903465.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567189|gb|ABL01994.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 421 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 72/106 (67%), Gaps = 5/106 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL---RDELMPKNILLVGP 61 +N++P+++ + L+ Y+IGQ AK+ +++A+ N ++R L +D + EL NIL+VGP Sbjct: 58 WNYTPKQLNNFLNDYVIGQDHAKKVLSVAVYNHYKR--LRSDYISNKVELDKSNILMVGP 115 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT +++ LAR+ PF + T TE GYVG +VE +I++L+ Sbjct: 116 TGSGKTLLAQTLARILDVPFTVADATTLTEAGYVGDDVENVIKNLL 161 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI R I VS EGVQ+ +L L+EG+ SV + G + Sbjct: 174 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTVASVPPQGGRKHPNQETIDV 233 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + +P DL+ Sbjct: 234 DTSKILFICGGAFDGLDKIINRRVEKVTGIGFAADVKDQKEKKTLSDLFALIQPEDLIKF 293 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV+ L L+++ IL + ++++I Q++E+ EG+ L F S+ A+ Sbjct: 294 GLIPEFVGRLPVQTALSELDETALVKILIEPKNSVIKQFQEIFFMEGVKLIFRNPSLLAI 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A +A+ IGAR L++++E +L D F L + T VI Sbjct: 354 ARLAIKRK-----IGARGLRSILEDLLLDTMFELPSLLDVTEVI 392 >gi|116515218|ref|YP_802847.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257072|gb|ABJ90754.1| specificity component of Clp ATP-dependent serine protease, chaperone [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 420 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ--LPADLRDELMPKNILLVGPTGV 64 ++P+ I LD++IIGQ+ AK+ +++A+ N +++ L + EL NIL++GPTG Sbjct: 61 YTPKIIKEYLDKFIIGQKKAKKIISVAVYNHYKKINYLLKKNRSLELGKSNILIIGPTGT 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 GKT I+ LA+ PF + T TE GYVG +VE I+R L++ Sbjct: 121 GKTLIAETLAKYLKVPFAIADATTLTEAGYVGEDVENILRKLIE 164 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + I Sbjct: 176 GIIYIDEIDKITKKSENLSITRDVSGEGVQQSLLKIIEGTIASVPIKGTRKHPQQETWKI 235 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 NT ILFI G+F +P DL+ Sbjct: 236 NTSKILFICGGSFFGLTKILSNRLNKTSNIGFNKKIKKIKKNKKKNNYLNKIQPQDLIKF 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE R P+ V LKSL KSD IL ++ LI QYK+L E + L F ++ + Sbjct: 296 GLIPEFISRLPIIVTLKSLKKSDLIKILCKPKNALIKQYKKLFSLEKVKLKFDNTALKEI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL + + + K++ ID+ ++ Sbjct: 356 AKYAIKKKT-----GARGLRSILESVLLNTMYKIPTFKNIKSIHIDSSVIK 401 >gi|297571130|ref|YP_003696904.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arcanobacterium haemolyticum DSM 20595] gi|296931477|gb|ADH92285.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcanobacterium haemolyticum DSM 20595] Length = 422 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 12/121 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58 P EI L++Y++GQ+ AKR +A+A+ N ++R +Q P D+ E+ NILL Sbjct: 65 PAEIFEFLNQYVVGQERAKRTLAVAVYNHYKRIRSQQGSSLAKQSPNDV--EIGKSNILL 122 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A + V ++ Sbjct: 123 MGPTGTGKTYLAQSLAKMLDVPFAIADATALTEAGYVGEDVENILLKLIQAAGDDVERAQ 182 Query: 119 R 119 R Sbjct: 183 R 183 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 60/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 184 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIDI 243 Query: 292 NTDHILFIASGAF--------------------------HVSR------PADL-----LP 314 +T ++LFI +GAF H + P DL +P Sbjct: 244 DTSNVLFIVAGAFAGMEDIVSSRTGRRGIGFGAKLHEADHGAEVFREVTPEDLHKFGIIP 303 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ +++ L D ILT ++ L+ QY+++ +G+ILD T ++ A+A+ A Sbjct: 304 ELIGRLPIITNVEELTVDDLVQILTTPKNALLKQYQKMFALDGVILDMTPAALRAIAEEA 363 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + + GAR L+++ME +L ++ F S D++ VVID + V Sbjct: 364 IARGT-----GARGLRSIMENLLRELMFDIPSRDDVER--VVIDEDVV 404 >gi|159030461|emb|CAO91363.1| clpX [Microcystis aeruginosa PCC 7806] Length = 444 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 11/121 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDELMPKNILL 58 PREI LD Y+IGQ +AK+ +++A+ N ++R + P D EL NILL Sbjct: 79 PREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPED-SIELQKSNILL 137 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++ Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197 Query: 119 R 119 R Sbjct: 198 R 198 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 199 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 258 Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311 +T +ILFI GAF +P D Sbjct: 259 DTSNILFICGGAFVGLDKVIDQRLGKKSMGFIQPGDSQASKDKVAAGLLKQMTPDDLVKF 318 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR PV L L++ ILT + L+ QY++L+K + + L+F D++ A+ Sbjct: 319 GMIPEFVGRIPVLAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAI 378 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L+ ++E ++ D+ + Sbjct: 379 AQEAYRRKT-----GARALRGIVEELMLDVMY 405 >gi|62260894|gb|AAX77944.1| unknown protein [synthetic construct] Length = 452 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 85 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 144 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 145 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 188 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 198 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 257 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + +D Sbjct: 258 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIESEDLTRFG 317 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 318 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 377 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 378 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 418 >gi|325970909|ref|YP_004247100.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta sp. Buddy] gi|324026147|gb|ADY12906.1| ATP-dependent Clp protease ATP-binding subunit clpX [Spirochaeta sp. Buddy] Length = 409 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P+E+ +D Y+IGQ DAKR +A+A+ N ++R Q+ A+ EL NIL+VGPTG Sbjct: 60 TPKELKDYMDEYVIGQDDAKRVLAVAVYNHYKRVKFQKQIAEQGVELDKSNILMVGPTGT 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 GKTLLASTLAKKLQVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 59/237 (24%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG-- 289 D+I+ E YGI+F+DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 167 DNIKAAE-YGIIFIDEIDKIAKKGENPSITRDVSGEGVQQALLKIIEGTDASVPPQGGRK 225 Query: 290 -------SINTDHILFIASGAF---------HVSRPA----------------------- 310 INT +ILFI GAF VS A Sbjct: 226 HPNQEMLKINTRNILFICGGAFVGLDKVIEKRVSSHAMGFGASIINAQDKDLHALYSKMM 285 Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 L+PE GR P+ V L +L+K D I+ + +++++ QY+ + +GI F Sbjct: 286 PDDLIKFGLIPEFIGRLPIHVALDNLSKKDLMRIIVEPKNSILRQYEAAFRLDGIEFIFK 345 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 ++++A+A+ A + GAR L++++E ++ I + +Q+ K V++ E V Sbjct: 346 SEAVEAVAEKAFEQKT-----GARGLRSIVENIMMGIMYDIPSIQQVKQVIVGRECV 397 >gi|188534633|ref|YP_001908430.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia tasmaniensis Et1/99] gi|188029675|emb|CAO97554.1| ATP-dependent specificity component of ClpP serine protease, chaperone [Erwinia tasmaniensis Et1/99] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L + + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEAALLNTMYDLPSVDDVEKVVID 399 >gi|188534631|ref|YP_001908428.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia tasmaniensis Et1/99] gi|188029673|emb|CAO97552.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Erwinia tasmaniensis Et1/99] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L + + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEAALLNTMYDLPSVDDVEKVVID 399 >gi|331092463|ref|ZP_08341287.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA] gi|330401203|gb|EGG80795.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 2_1_46FAA] Length = 467 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD YI+GQ+ AK+A+A+A+ N ++R E+ N+L++GPTG GKT Sbjct: 115 APHKIKASLDEYIVGQEHAKKAMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGCGKT 174 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G ++E ++ L+ A N V ++ EQ Sbjct: 175 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQGI 228 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K +N R+V + ++ G Sbjct: 229 IFIDE--IDK-IAKKKNTNQRDVSGESVQQG 256 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++NT Sbjct: 227 GIIFIDEIDKIAKKKNTNQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 286 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF V ADL +P Sbjct: 287 KNILFICGGAFPDLEEIIKERLNKQASVGFMADLKDKYNNDKNLLEKVEVEDLRNFGMIP 346 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L++ IL + ++ ++ QY++L+ + + L+F E+++ A+A+ A Sbjct: 347 EFIGRLPVIFTLQGLDRDKLVKILKEPKNAILKQYQKLLALDEVKLEFDEEALGAIAEKA 406 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + D GAR L+ ++E + DI + Sbjct: 407 MK-----KDTGARALRAIIEEFMLDIMY 429 >gi|226311382|ref|YP_002771276.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus brevis NBRC 100599] gi|254763836|sp|C0ZAG3|CLPX_BREBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226094330|dbj|BAH42772.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacillus brevis NBRC 100599] Length = 421 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+++++A+ N ++R A + D EL NI+L+GPTG GKT Sbjct: 64 PVEIRKILDDYVIGQDMAKKSLSVAVYNHYKRINSGAKIEDVELQKSNIMLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTSNILFICGGAFDGVEQIIKRRLGKKVIGFGADFGDGVKGDLKAGEYLKYILPEDLLKF 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L+ L++ ILT+ +++L+ QY++L+ +G+ L+F ++ + Sbjct: 296 GLIPEFVGRLPVLATLEPLDEETLVRILTEPKNSLVKQYQKLLSLDGVELEFDNGALLQI 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ N+ GAR L+ ++E+++ D+ + ++ VI E VR Sbjct: 356 AKEAIKRNT-----GARGLRAIIEQIMLDMMYELPSREDVNKCVITEETVR 401 >gi|224532429|ref|ZP_03673056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi WI91-23] gi|224512639|gb|EEF83013.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia burgdorferi WI91-23] Length = 430 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 + N+ GAR L++++E + +D+ F + + K VV+ E V Sbjct: 357 ILKNT-----GARGLRSILEGLFKDVMFEVPSISKAKKVVVTKESV 397 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDNGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|262380155|ref|ZP_06073310.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter radioresistens SH164] gi|262298349|gb|EEY86263.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter radioresistens SH164] Length = 438 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKVSQNGHKTEDKVEIAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQV 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T ++LFI GAF PADL Sbjct: 239 DTSNVLFICGGAFSGLEKIVQHRQEKGGIGFTAEVKSKDETKKLAELFRQVEPADLVKFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ +A Sbjct: 299 LIPEFIGRLPVIATLEELDEDALMQILTEPKNALTRQYQYLFNMEDVDLVFEDSALRTVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L++++E VL Sbjct: 359 KKALERNT-----GARGLRSILENVL 379 >gi|257068143|ref|YP_003154398.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachybacterium faecium DSM 4810] gi|256558961|gb|ACU84808.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachybacterium faecium DSM 4810] Length = 444 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 22/125 (17%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPA-------------- 45 +PREI L+ Y++GQ+ AKRA+A+A+ N ++R PA Sbjct: 65 APREIFDFLEEYVVGQEPAKRALAVAVYNHYKRVRAQESEQSATPAKSAAASLAEEVDSE 124 Query: 46 DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105 D R E+ N++LVGPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ Sbjct: 125 DDRIEVAKSNVMLVGPTGCGKTYLAQTLARMLDVPFTMADATALTEAGYVGEDVENILLK 184 Query: 106 LVDVA 110 L+ A Sbjct: 185 LLQAA 189 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 55/210 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 197 EHGIIYIDEIDKIGRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFI 256 Query: 290 SINTDHILFIASGAF----------------------HVSR----------PADLL---- 313 I+T ++LFI +GAF H P DLL Sbjct: 257 QIDTTNVLFIVAGAFAGIEDIIAQRIGKRGIGFGSELHSPLEQEQLYGKLLPEDLLKFGL 316 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+++ ILT+ + L+ Q++++ +G+ LDF +++A+AD Sbjct: 317 IPEFIGRLPVISSVSNLDRAALISILTEPRNALVKQFQKMFALDGVELDFERSALEAIAD 376 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E L+ + F Sbjct: 377 KAIERET-----GARGLRAILEESLQPVMF 401 >gi|124514480|gb|EAY55993.1| ATP-dependent Clp protease, ATP-binding subunit [Leptospirillum rubarum] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 P EI LD+Y++GQ+ AKR +++A+ N ++R Q+ D+ EL NIL++GPTG Sbjct: 65 LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDV--ELQKGNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A V ++ R Sbjct: 123 TGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAER 178 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 58/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQV 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF RP DLL Sbjct: 239 DTSNILFICGGAFIGLDNIISQRLSSKNLGFGAEIRTPEDRKRTGELLANVRPDDLLKYG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GRFPV L L+++ F ILT+ ++ L+ Q+++L E + L TE ++ A+A Sbjct: 299 LIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A + GAR L+ ++E V+ D+ + +Q Sbjct: 359 HKAF-----IQKTGARGLRAILEEVMLDLMYEIPSVQ 390 >gi|308276961|gb|ADO26860.1| ATP-dependent Clp protease ATP-binding subunit clpX [Corynebacterium pseudotuberculosis I19] Length = 406 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 10/121 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58 P EI + LD+Y+IGQ DAKR +++A+ N ++R + D EL NIL+ Sbjct: 45 PSEISAFLDKYVIGQDDAKRILSVAVYNHYKRVRAEESRVLSSRKNKDDETELQKSNILM 104 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V+ ++ Sbjct: 105 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAAEFDVQRAQ 164 Query: 119 R 119 R Sbjct: 165 R 165 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 166 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 225 Query: 292 NTDHILFIASGAFH---------------------VSR-------------PADL----- 312 +T +ILFI +GAF S+ P DL Sbjct: 226 DTSNILFIVAGAFAGLEKVIEERRGKKGIGFGAELTSKEDIDQIDVFKEVLPEDLVKFGL 285 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L++ +LT+ +++L+ QY+ L + + ++L+F +D+++ +AD Sbjct: 286 IPEFIGRLPIVATVGNLDQRSLVKVLTEPKNSLVKQYQRLFEMDDVVLEFDDDALEIIAD 345 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A+ + GAR L+ +ME +L + + D ++ VV Sbjct: 346 LAIERGT-----GARGLRAIMEELLVPVMYDIPDREDVGVV 381 >gi|226953944|ref|ZP_03824408.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp. ATCC 27244] gi|226835298|gb|EEH67681.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp. ATCC 27244] Length = 436 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R Q E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 106/393 (26%) Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151 I + VDV +++V+ S++ E + AS + I AL +G+ T V Sbjct: 32 ICNECVDVCMDLVQTSQQVEAGDWASKPLPKPHEIRAALDQYVIGQDIAKKTLSVAVYNH 91 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K+L+ G+ +IE+A SN + G G L++ ++++ Sbjct: 92 YKRLKAGQSGHTHKEIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258 P M D + L + V D +V+ GI+++DE DKI + Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305 I VS EGVQ+ LL ++EG+ S ++ I+T +ILFI GAF Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFS 251 Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325 + AD L+PE GR PV Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L++ ILT+ ++ L QY+ L E + L F E ++ A+A A+ N+ G Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNT-----G 366 Query: 386 ARRLQTVMERVLEDISF---SASDLQEKTVVID 415 AR L++++E VL + + S SD+ TV++D Sbjct: 367 ARGLRSILENVLLETMYDLPSRSDV--GTVIVD 397 >gi|90579277|ref|ZP_01235087.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] gi|90440110|gb|EAS65291.1| ATP-dependent protease ATP-binding subunit [Vibrio angustum S14] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P+EI + LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPQEIRNNLDDYVIGQAHAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARMLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRVATGTGIGFGAEVRSKDQTDTLSDLFEKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ E + L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTATLGELDEEALVQILREPKNALTKQYAALLELENVELEFRDDALVAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL D + Q VVID ++ Sbjct: 361 ARKAMERKT-----GARGLRSIVEAVLLDTMYELPSQQGVSKVVIDESVIK 406 >gi|189463686|ref|ZP_03012471.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM 17393] gi|189438636|gb|EDV07621.1| hypothetical protein BACINT_00017 [Bacteroides intestinalis DSM 17393] Length = 399 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 164 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 223 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 224 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTAVIDKSNMMQYIAPQDLKSFGLI 283 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + + + L F ++ + + D Sbjct: 284 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDKVELKFEDEVFEYIVDK 343 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F + T V+ +Y + Sbjct: 344 AVEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDTFVVTLDYAK 385 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 52 PLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 110 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 111 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 163 >gi|218295536|ref|ZP_03496349.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus aquaticus Y51MC23] gi|218244168|gb|EED10694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermus aquaticus Y51MC23] Length = 396 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 52/221 (23%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 166 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFIP 224 Query: 291 INTDHILFIASGAFH----------------VSRPA----------------DLLPEIQG 318 +NT +ILFI GAF +RP L+PE G Sbjct: 225 VNTKNILFILGGAFEGLENIVKARTERTTIGFTRPRAKEEPMEVIPEDLVKFGLIPEFVG 284 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R P+ V L L + D ILT+ ++ L+ QY+ L++ EGI L FT+ ++ +A A+ Sbjct: 285 RAPLIVQLHPLGEEDLVRILTEPKNALVKQYQALLRMEGIELRFTQAALREIARRALKRG 344 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ ++E+ + D+ F A + +VID ++ Sbjct: 345 T-----GARGLRAILEKTMVDLMFEAPGSGVREIVIDLPHL 380 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI + LD Y++GQ+ AKRA+++A+ N ++R P E+ NILL+GPTG GKT Sbjct: 57 KPQEIKAHLDGYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKSNILLIGPTGTGKT 113 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR PF + T TE GYVG +VE +I L+ A Sbjct: 114 LLAETLARFLEVPFAIADATTLTEAGYVGEDVENVILRLLQNA 156 >gi|149911804|ref|ZP_01900407.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36] gi|149805104|gb|EDM65127.1| ATP-dependent Clp protease ATP-binding subunit [Moritella sp. PE36] Length = 424 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P +I +LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHQIRGKLDDYVIGQDHAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 120 PTGSGKTLLAETLARILDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 178 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 239 DTSKILFICGGAFSGLDKVIEMRTNTNSGIGFTAEVKGEAEKATLSEVFAKVEPQDLVKF 298 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++S ILT+ ++ L QY L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVTATLTELDESALIQILTEPKNALTKQYSALFDLEGVDLEFREEALTAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ N+ GAR L++++E +L D + Sbjct: 359 AKKAMSRNT-----GARGLRSIVEAILLDTMY 385 >gi|42562485|ref|NP_564423.3| ATP-dependent Clp protease ATP-binding subunit ClpX, putative [Arabidopsis thaliana] gi|51536496|gb|AAU05486.1| At1g33360 [Arabidopsis thaliana] gi|53850505|gb|AAU95429.1| At1g33360 [Arabidopsis thaliana] gi|332193466|gb|AEE31587.1| ATP-dependent Clp protease [Arabidopsis thaliana] Length = 656 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 12/115 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKN 55 +P+EI LD+++IGQ AK+ +++A+ N ++R Q + D EL N Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 310 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +LL+GPTG GKT +++ LARL PF+ + T T+ GYVG +VE I+ L+ VA Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVA 365 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%) Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287 TV ++Q + GIV++DE DKI + I VS EGVQ+ LL L+EG+ V+ Sbjct: 363 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 421 Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311 + I+T ILFI GAF V R D Sbjct: 422 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 481 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L+PE GRFP+ V L +L + +L + ++ L QYK+L Sbjct: 482 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 541 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + L FTE +++ ++ A+ V + GAR L+ ++E +L + F D ++ Sbjct: 542 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 596 Query: 413 VIDA 416 IDA Sbjct: 597 RIDA 600 >gi|329116132|ref|ZP_08244849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parauberis NCFD 2020] gi|326906537|gb|EGE53451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parauberis NCFD 2020] Length = 409 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E++ L++Y++GQ AKRA+A+A+ N ++R + RDE L NI+++GPTG Sbjct: 64 PKELLEALNQYVVGQDRAKRALAVAVYNHYKRISYK-ESRDEEEVELQKSNIMMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 123 GKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+ D ILT+ ++ L+ QY+ L+ +G+ L+F +++++A+A A Sbjct: 298 EFIGRLPVVAALEQLSIGDLIQILTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ N+ GAR L++++E + DI F ++ T VI Sbjct: 358 IDRNT-----GARGLRSIIEETMLDIMFDIPSQEDITKVI 392 >gi|325963647|ref|YP_004241553.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter phenanthrenivorans Sphe3] gi|323469734|gb|ADX73419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter phenanthrenivorans Sphe3] Length = 426 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD-------ELMPKNI 56 PREI L Y+IGQ+ AKR++A+A+ N ++R Q L D E+ NI Sbjct: 64 PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLADGGHHDDVEIAKSNI 123 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 55/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246 Query: 292 NTDHILFIASGAF-----------------------HVSR---------PADLL-----P 314 +T ++LFI +GAF S+ P DLL P Sbjct: 247 DTTNVLFIVAGAFAGLEEIIGSRSGRKGIGFGAPLNEASKKVDSYGEVMPEDLLKFGLIP 306 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + +L++ IL+ ++ L+ QY+++ + +G+ L F E +++A+AD A Sbjct: 307 EFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQIDGVELVFDETALNAIADQA 366 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 + + GAR L+ +ME VL + F ++ V+ E V L Sbjct: 367 LERGT-----GARGLRAIMEEVLLPVMFDLPSREDVASVVITEDVVL 408 >gi|255532967|ref|YP_003093339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter heparinus DSM 2366] gi|255345951|gb|ACU05277.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pedobacter heparinus DSM 2366] Length = 413 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64 P EI + +D+Y+IGQ DAK+ +A+A+ N ++R D DE + NI+LVG TG Sbjct: 62 LKPLEIKAHIDQYVIGQDDAKKVLAVAVYNHYKRLSQKVDKGDEVEIEKSNIMLVGETGT 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAA 167 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 61/237 (25%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290 GIV++DE DK VAR S N VS EGVQ+ LL ++EG+ V+ K Sbjct: 177 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIP 235 Query: 291 INTDHILFIASGAFH-VSR--------------------------------PADL----- 312 +NT++ILFI GAF + R P DL Sbjct: 236 VNTNNILFICGGAFDGIERKIANRLRTQAVGYKVKKDDAELDLKNLYKYITPQDLKSFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV HL L+K R ILT+ +++L QY +L + E + L F + +D + D Sbjct: 296 IPELIGRVPVLTHLNPLDKQALRNILTEPKNSLFRQYVKLFELENVKLTFDNEVLDFIVD 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIGDF 426 A+ +GAR L+++ E ++ D F S + ++E ++ +D + DF Sbjct: 356 KAMEYK-----LGARGLRSICEAIMLDAMFEIPSDTSVKELSITLDYAVEKFEKADF 407 >gi|212532331|ref|XP_002146322.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC 18224] gi|210071686|gb|EEA25775.1| ATP-dependent Clp protease, putative [Penicillium marneffei ATCC 18224] Length = 633 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 65/404 (16%) Query: 43 LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P +L NILL+GP+GVGKT +++ LAR+ PF + T FT+ GY+G + + Sbjct: 183 FPDTSSTQLEKSNILLLGPSGVGKTLMAKTLARVLDVPFSMSDCTPFTQAGYIGEDADVC 242 Query: 103 IRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISD 162 + L+ A V ++ R + ++ ++I A V + V + L+ E + Sbjct: 243 VHRLLAAANYDVEKAERGII----CLDEVDKIATARVSHGKDVSGEGVQQALLKIVEGTT 298 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 ++ ++ +S + PG G S S SG P + Sbjct: 299 VQVQVKPEKNTSRPAG-GAPGSFPPGATPGSAFNSPSTASG-------------PPPQKG 344 Query: 223 ESDRLIDMDTVHRDSIQMVENYGIVFLDE--FDKIVARDSGNGIGV------------SR 268 E + V D+I + + V L++ D+I G G V S Sbjct: 345 E------IYNVRTDNILFIFSGAFVGLNKIIMDRISKSSMGFGQPVRASSISSGNSSSSH 398 Query: 269 EGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL--- 312 + + +P++ GS Y H+ F S +S P+DL Sbjct: 399 DASNQAPIPIIPGSEEEALY----KKHLPFFTSATPPTSSEEPVYFNPLDLSTPSDLQKF 454 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L SL+ S ILT+ ++L+ QY+ L GI L FT ++ + Sbjct: 455 GFIPELVGRIPVTTALSSLSHSLLLRILTEPRNSLVTQYETLFDLSGIKLSFTTPALHKI 514 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A A+++ + GAR L+T +E +L D F A K V++ Sbjct: 515 ASNALSMGT-----GARALRTELETILSDAMFEAPGSSVKFVLV 553 >gi|149003196|ref|ZP_01828092.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS69] gi|147758656|gb|EDK65653.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS69] Length = 251 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 >gi|150388890|ref|YP_001318939.1| ATP-dependent protease ATP-binding subunit [Alkaliphilus metalliredigens QYMF] gi|229889848|sp|A6TM62|CLPX_ALKMQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|149948752|gb|ABR47280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkaliphilus metalliredigens QYMF] Length = 420 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ+ AK+A+A+A+ N ++R D EL NI+++GPTG GKT Sbjct: 63 PKEIKDILNGYVIGQEKAKKALAVAVYNHYKRINTDTKTDDVELQKSNIMMLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 165 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF +P DLL Sbjct: 235 DTTNILFICGGAFDGIEKLIQKRTGKTSMGFGADVKSKVVKDIGGLLKQIQPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L+++ ILT+ ++ L+ QYK+L + +G+ ++F +++ +A+ Sbjct: 295 IPEFVGRLPVIVTLDQLDEAALIEILTEPKNALVKQYKKLFEIDGVNVEFEGEALKLIAE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E ++ DI + Sbjct: 355 KAIERKT-----GARGLRGIVEGLMMDIMY 379 >gi|206602655|gb|EDZ39136.1| ClpX, ATPase regulatory subunit [Leptospirillum sp. Group II '5-way CG'] Length = 426 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 P EI LD+Y++GQ+ AKR +++A+ N ++R Q+ D+ EL NIL++GPTG Sbjct: 65 LKPAEINRILDQYVVGQEKAKRVLSVAVYNHYKRINANQISDDV--ELQKGNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE II L+ A V ++ R Sbjct: 123 TGKTLLAQTLARILEVPFAIADATTLTEAGYVGEDVENIILKLLQAADYDVEKAER 178 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 58/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQV 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF RP DLL Sbjct: 239 DTSNILFICGGAFIGLDNIISQRLSSKNLGFGAEIRTPEDRKRTGELLANVRPDDLLKYG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GRFPV L L+++ F ILT+ ++ L+ Q+++L E + L TE ++ A+A Sbjct: 299 LIPEFVGRFPVMAVLDDLDEAAFYRILTEPKNALVKQFEKLFALEKVRLRMTEGALKAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A + GAR L+ ++E V+ D+ + +Q Sbjct: 359 HKAF-----IQKTGARGLRAILEEVMLDLMYEIPSVQ 390 >gi|297851760|ref|XP_002893761.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp. lyrata] gi|297339603|gb|EFH70020.1| hypothetical protein ARALYDRAFT_473508 [Arabidopsis lyrata subsp. lyrata] Length = 660 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 12/115 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKN 55 +P+EI LD+++IGQ AK+ +++A+ N ++R Q + D EL N Sbjct: 255 TPKEICKWLDKFVIGQTRAKKVLSVAVYNHYKRIYHTSMKKGSAAQPIDDDDNVELDKSN 314 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +LL+GPTG GKT +++ LARL PF+ + T T+ GYVG +VE I+ L+ VA Sbjct: 315 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVA 369 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%) Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287 TV ++Q + GIV++DE DKI + I VS EGVQ+ LL L+EG+ V+ Sbjct: 367 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 425 Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311 + I+T ILFI GAF V R D Sbjct: 426 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 485 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L+PE GRFP+ V L +L + +L + ++ L QYK+L Sbjct: 486 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 545 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + L FTE +++ ++ A+ V + GAR L+ ++E +L + F D ++ Sbjct: 546 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 600 Query: 413 VIDA 416 IDA Sbjct: 601 RIDA 604 >gi|187931472|ref|YP_001891456.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. mediasiatica FSC147] gi|187712381|gb|ACD30678.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella tularensis subsp. mediasiatica FSC147] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVTQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|256787755|ref|ZP_05526186.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces lividans TK24] gi|289771642|ref|ZP_06531020.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces lividans TK24] gi|289701841|gb|EFD69270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces lividans TK24] Length = 428 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404 >gi|226329067|ref|ZP_03804585.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198] gi|225202253|gb|EEG84607.1| hypothetical protein PROPEN_02970 [Proteus penneri ATCC 35198] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKR------LRNGDKANGVELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 156/389 (40%), Gaps = 100/389 (25%) Query: 102 IIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD---- 157 I + VD+ ++I+RE E++E A + + T RK L D Sbjct: 36 ICDECVDLCVDIIRE----EIKELAPHHERSEL-----------PTPHEIRKHLDDYVIG 80 Query: 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCY- 216 E++ K + + V + + N D G +G N+ L GSG K + Y Sbjct: 81 QELAKKVLAVAVYNHYKRLRNGDKANGVELGKSNI--LLIGPTGSG--KTLLAETLARYL 136 Query: 217 --PELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVARDSG 261 P M D + L + V D +++ GIV++DE DKI + Sbjct: 137 DVPFTMAD-ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKITRKSEN 195 Query: 262 NGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---- 304 I VS EGVQ+ LL LVEG+ S ++ ++T ILFI GAF Sbjct: 196 PSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLD 255 Query: 305 ---------HVS-----------------------RPADLL-----PEIQGRFPVRVHLK 327 H P DL+ PE GR PV L Sbjct: 256 KVVAQRLNTHSGIGFGAEVKSQKEKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLG 315 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 LN+ IL + ++ L QY+ L K EG+ L+F ++++ A+A A+ V GAR Sbjct: 316 ELNEEALIQILQEPKNALTKQYQALFKLEGVDLEFRKEALTAIAKKAM-----VRKTGAR 370 Query: 388 RLQTVMERVLEDISFSASDLQE-KTVVID 415 L++++E L D + + + VVID Sbjct: 371 GLRSIVEAALLDTMYDLPSFENAEKVVID 399 >gi|224367557|ref|YP_002601720.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfobacterium autotrophicum HRM2] gi|259491255|sp|C0QHJ8|CLPX_DESAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|223690273|gb|ACN13556.1| ClpX1 [Desulfobacterium autotrophicum HRM2] Length = 418 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 6/118 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGP 61 +PREI LD Y+I Q AK+ +++A+ N ++R L A+++ E + NILL+GP Sbjct: 63 KLTPREIKDVLDTYVIEQDRAKKVLSVAVYNHYKR--LDAEVKSEDDVEIQKSNILLIGP 120 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LAR PF + T TE GYVG +VE II LV A + +++R Sbjct: 121 TGCGKTLLAQTLARFLDVPFALADATTLTEAGYVGEDVENIILSLVQNADYDIEKAQR 178 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI R I VS EGVQ+ LL ++EG++ S + + Sbjct: 179 GIIYIDEVDKISQRGDNPSITRDVSGEGVQQALLKIIEGTTASIPPKGGRKHPQQDFVKV 238 Query: 292 NTDHILFIASGAF---------HVS-------------------------RPADLL---- 313 T +ILF+ G F +S +P DL+ Sbjct: 239 ETSNILFVCGGTFTGLEKVIERRISQKSMGFGAEVQSRKEKNVGELLEQLKPEDLIKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L LN++ ILT+ ++ L+ QY+ L + E + L FTE+++ A+A Sbjct: 299 IPEFLGRLPVVTSLSELNEASLVKILTEPKNALLKQYQRLFEFENVKLTFTEEALAAMAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV S GAR L+ +ME + DI + Sbjct: 359 EAVTRRS-----GARGLRAIMEETMLDIMY 383 >gi|166369014|ref|YP_001661287.1| ATP-dependent protease ATP-binding subunit ClpX [Microcystis aeruginosa NIES-843] gi|189044139|sp|B0JL96|CLPX_MICAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166091387|dbj|BAG06095.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa NIES-843] Length = 444 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 11/121 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----------LPADLRDELMPKNILL 58 PREI LD Y+IGQ +AK+ +++A+ N ++R + P D EL NILL Sbjct: 79 PREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKAGGGSPED-SIELQKSNILL 137 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++ Sbjct: 138 IGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQ 197 Query: 119 R 119 R Sbjct: 198 R 198 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 199 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 258 Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311 +T +ILFI GAF +P D Sbjct: 259 DTSNILFICGGAFVGLDKVIDQRLGKKSMGFIQPGDGQASKDKVAAGLLKQMTPDDLVKF 318 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR P+ L L++ ILT + L+ QY++L+K + + L+F D++ A+ Sbjct: 319 GMIPEFVGRIPILAALSPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVLAI 378 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L+ ++E ++ D+ + Sbjct: 379 AQEAYRRKT-----GARALRGIVEELMLDVMY 405 >gi|125975223|ref|YP_001039133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium thermocellum ATCC 27405] gi|256003115|ref|ZP_05428107.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium thermocellum DSM 2360] gi|281419197|ref|ZP_06250213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium thermocellum JW20] gi|166214772|sp|A3DJ11|CLPX_CLOTH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|125715448|gb|ABN53940.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium thermocellum ATCC 27405] gi|255992806|gb|EEU02896.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium thermocellum DSM 2360] gi|281407063|gb|EFB37325.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium thermocellum JW20] gi|316939387|gb|ADU73421.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium thermocellum DSM 1313] Length = 431 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD+Y++GQ AK+A+A+A+ N ++R + +D++ EL NI+++GPTG G Sbjct: 64 PSEIKEILDQYVVGQDTAKKALAVAVYNHYKR--INSDVKGSDVELQKSNIVMLGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------HVSR------PADLL---- 313 +T +ILFI GAF +V P DLL Sbjct: 236 DTTNILFICGGAFDGIEKIIQNRIGKKSMGFGAKIESPKKANVGEILKNILPQDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL++ ILT+ ++ L+ QY++L + + +IL+F +++I+A+AD Sbjct: 296 IPEFVGRLPVIVTLHSLDREALVKILTEPKNALVKQYQKLFEMDDVILEFEKEAIEAIAD 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ + Sbjct: 356 KAIERNT-----GARGLRAILEEIMLDVMY 380 >gi|332519947|ref|ZP_08396411.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix algicola 5H-3-7-4] gi|332044506|gb|EGI80700.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lacinutrix algicola 5H-3-7-4] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT++ILFIA GAF +S+ P DL + Sbjct: 234 NTENILFIAGGAFDGIERVISKRLNMQALGYSAAMSEDTVDKNNILQYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ + R ILT+ ++ +I QYK+L + I L T+ +++ + Sbjct: 294 PEIIGRLPVLTHMNPLDANTLRAILTEPKNAIIKQYKKLFSMDEIELSITDGALEYIVGK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E +L D F K + + Y Sbjct: 354 AIEYK-----LGARGLRSLCEEILTDAMFELPGSDTKKLSVTKAY 393 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P++I + LD YIIGQ+ K+ +++A+ N ++R Q P + E+ NI++VG TG GKT Sbjct: 62 PQQIKAFLDEYIIGQEHTKKVMSVAVYNHYKRLLQQPTNDDIEIQKSNIIMVGETGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ ++++ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LMAKTISKMLNVPLSIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|294651551|ref|ZP_06728860.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter haemolyticus ATCC 19194] gi|292822574|gb|EFF81468.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter haemolyticus ATCC 19194] Length = 436 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R Q E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDIAKKTLSVAVYNHYKRLKAGQSGHTHKEIEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 106/393 (26%) Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151 I + VDV +++V+ S++ E + AS + I AL +G+ T V Sbjct: 32 ICNECVDVCMDLVQTSQQVEAGDWASKPLPKPHEIRAALDQYVIGQDIAKKTLSVAVYNH 91 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K+L+ G+ +IE+A SN + G G L++ ++++ Sbjct: 92 YKRLKAGQSGHTHKEIEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258 P M D + L + V D +V+ GI+++DE DKI + Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAFH 305 I VS EGVQ+ LL ++EG+ S ++ I+T +ILFI GAF Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTANILFICGGAFS 251 Query: 306 --------------VSRPAD--------------------------LLPEIQGRFPVRVH 325 + AD L+PE GR PV Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDDSKKVSELFRQVEATDLVKFGLIPEFIGRLPVIAT 311 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L++ ILT+ ++ L QY+ L E + L F E ++ A+A A+ N+ G Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFTMEDVDLVFEESALRAVAKKALERNT-----G 366 Query: 386 ARRLQTVMERVLEDISF---SASDLQEKTVVID 415 AR L++++E VL + + S SD+ TV++D Sbjct: 367 ARGLRSILENVLLETMYDLPSRSDV--GTVIVD 397 >gi|283479303|emb|CAY75219.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia pyrifoliae DSM 12163] Length = 292 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 239 DTSKILFICGGAF 251 >gi|220912905|ref|YP_002488214.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter chlorophenolicus A6] gi|254763831|sp|B8HA33|CLPX_ARTCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219859783|gb|ACL40125.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter chlorophenolicus A6] Length = 426 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD-------ELMPKNI 56 PREI L Y+IGQ+ AKR++A+A+ N ++R Q +L D E+ NI Sbjct: 64 PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGNLGDGGHHDDVEIAKSNI 123 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 55/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246 Query: 292 NTDHILFIASGAF-----------------------HVSRPAD--------------LLP 314 +T ++LFI +GAF S+ AD L+P Sbjct: 247 DTTNVLFIVAGAFAGLEEIIGSRSGRKGIGFGAPLNEASKKADSYGEVMPEDLLKFGLIP 306 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + +L++ IL+ ++ L+ QY+++ + +G+ L F + ++DA+AD A Sbjct: 307 EFIGRLPVITTVSNLDRDALIQILSTPKNALVKQYQKMFQIDGVELVFDDGALDAIADQA 366 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 + + GAR L+ ++E VL + F ++ V+ E V L Sbjct: 367 LERGT-----GARGLRAILEEVLLPVMFDLPSREDVASVVITEDVVL 408 >gi|83765746|dbj|BAE55889.1| unnamed protein product [Aspergillus oryzae] Length = 609 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 116/489 (23%), Positives = 191/489 (39%), Gaps = 120/489 (24%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 86 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQELQRRDEEAVELLAKRARRESVDRH 145 Query: 43 ----------LPAD---------LRD----ELMPKNILLVGPTGVGKTAISRRLARLAGA 79 P D L D +L NILL+GP+GVGKT +++ LA++ Sbjct: 146 PVEGQQRTSRPPFDPSSSLNQTELTDSSTIQLEKSNILLLGPSGVGKTLMAKTLAKVLSV 205 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAE--- 131 PF + T FT+ GY+G + E + L+ A V ++ R DEV + A+ Sbjct: 206 PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGK 265 Query: 132 ----ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASV 187 E + AL+ K T +V K+ ++ + + ++S + N P Sbjct: 266 DVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TYPSNSPLGNSPYPPSNGG 322 Query: 188 GILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247 G+ E+++ R I + L + + MD + R SI Sbjct: 323 GMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVMDRISRGSIG-------- 363 Query: 248 FLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVSTKYGSINTDHILFIASG- 302 F + V S + R G +P+V GS Y H+ F S Sbjct: 364 ----FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEALY----KKHLPFFTSAS 412 Query: 303 ------------AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 A + P DL +PE+ GR PV L +L + ILT+ ++L Sbjct: 413 PESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSL 472 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 + QY L GI L FT ++ +A A + + GAR L+T ME +L D + Sbjct: 473 LAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARALRTEMETILSDAMYETP 527 Query: 406 DLQEKTVVI 414 K V++ Sbjct: 528 GSSVKFVLV 536 >gi|331005197|ref|ZP_08328591.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma proteobacterium IMCC1989] gi|330420979|gb|EGG95251.1| ATP-dependent Clp protease ATP-binding subunit ClpX [gamma proteobacterium IMCC1989] Length = 433 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD--ELMPKNILLVGPT 62 +P+EI LD+Y+IGQ AKR +++A+ N ++R + +D EL NIL+VGPT Sbjct: 70 TPKEITEILDQYVIGQFRAKRVLSVAVYNHYKRLRFGDTAGKDKDTVELGKSNILMVGPT 129 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 G GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 130 GSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 174 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 187 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 246 Query: 292 NTDHILFIASGAF----HVSR------------------------------------PAD 311 +T +ILF+ GAF V R Sbjct: 247 DTSNILFVCGGAFAGLDKVIRDRSEKGGIGFNAVVKNKEESKGVGEALKELESEDLVAYG 306 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L+ L++ ILT+ +++L QY +L + EG+ +DF ED++ A+A Sbjct: 307 LIPEFVGRLPMIATLEELDEQALIQILTEPKNSLTKQYTKLFEMEGVEIDFREDALKAVA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A+ V GAR L+++ME VL D + S+ + VV+D Sbjct: 367 TKAM-----VRKTGARGLRSIMEAVLLDTMYRIPSEENVQKVVVD 406 >gi|310766845|gb|ADP11795.1| ATP-dependent protease ATP-binding subunit ClpX [Erwinia sp. Ejp617] Length = 424 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVIGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGSGIGFGASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLTELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ + GAR L++++E L D + + + + VVID Sbjct: 359 ANKAMRRKT-----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|251791977|ref|YP_003006697.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter aphrophilus NJ8700] gi|247533364|gb|ACS96610.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter aphrophilus NJ8700] Length = 415 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 65 TPHKIRAHLDDYVIGQDYAKKVLAVAVYNHYKRLRTKHQTDDVELGKSNILLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ L+ Sbjct: 125 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 165 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G I Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 237 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 238 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTNLFKQVEPDDLMKY 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ L QY+ L E + L+FT+D++ A+ Sbjct: 298 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEDVKLEFTKDALIAM 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E VL D + L+ EK VV Sbjct: 358 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLEKVVV 397 >gi|152967458|ref|YP_001363242.1| ATP-dependent protease ATP-binding subunit ClpX [Kineococcus radiotolerans SRS30216] gi|189044138|sp|A6WDT9|CLPX_KINRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151361975|gb|ABS04978.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kineococcus radiotolerans SRS30216] Length = 430 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P+EI LD+Y+IGQ AK+++A+A+ N ++R Q+ E+ NILL+GPT Sbjct: 64 PKEIFDFLDQYVIGQSSAKKSLAVAVYNHYKRIQVGEPSTKGREDAVEISKSNILLIGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T ++LFI GAF + R P DL+ Sbjct: 241 DTTNVLFIVGGAFAGLDRIIEARSGKQGLGFGAQLRSTTEKKAEPSFADVMPEDLMKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ +++L++ ILT + L QY+ + + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPIITSVENLDQEALVQILTKPRNALAKQYQRMFELDGVELEFTDDALEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ ++E VL + F Sbjct: 361 QAI-LRGT----GARGLRAIIEEVLLPVMF 385 >gi|225874968|ref|YP_002756427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium capsulatum ATCC 51196] gi|225791560|gb|ACO31650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium capsulatum ATCC 51196] Length = 426 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ+ K+ +A+A+ N ++R Q+ + EL NILLVGPTG GK Sbjct: 69 PLEVKAFLDEYVIGQEQTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA++ PF V+ T TE GYVG +VE II L+ A Sbjct: 129 TLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 66/237 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 241 Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309 +T +ILFI GAF ++ P Sbjct: 242 DTTNILFICGGAFVGLERVVGRRVGKKALGFKAIAEKDQQENGQTTRTQRDTELLRMAEP 301 Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DL+ PE GR PV L L+++ ILT + ++ QY++L + EG+ L F+E Sbjct: 302 QDLIRYGLIPEFVGRLPVIGILDELDEAALVEILTKPRNAILKQYQKLFEFEGVNLVFSE 361 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 ++ A+A A++ +GAR L+ ++E ++ D+ + S+ + +VIDAE V+ Sbjct: 362 EAAHAIALEALDRK-----VGARGLRMILEELMLDLMYHLPSNKRVSDLVIDAEMVK 413 >gi|126659495|ref|ZP_01730628.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110] gi|126619229|gb|EAZ89965.1| ATP-dependent protease ATP-binding subunit [Cyanothece sp. CCY0110] Length = 391 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI LD Y+IGQ +AK+ +++A+ N ++R L D EL NILL+GPTG Sbjct: 32 PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLNLVQGKNDDDNIELQKSNILLMGPTGS 91 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 92 GKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 146 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 102/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 147 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 206 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R ADL+ Sbjct: 207 DTSNILFICGGAFVGLERVIEQRIGKKSMGFVRPGEGQSKEKRTADLMQRVEPDDLVKFG 266 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L + ILT + L+ QY++L+ + + L+F+E+++ A+A Sbjct: 267 MIPEFVGRIPVMAALNPLTEETLVAILTRPRNALVKQYQKLLNMDNVELEFSEEAVKAIA 326 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A + GAR L+ ++E ++ D+ + Q+ + +I E V Sbjct: 327 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRQDVQKCMITKEMV 370 >gi|154509332|ref|ZP_02044974.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC 17982] gi|153798966|gb|EDN81386.1| hypothetical protein ACTODO_01857 [Actinomyces odontolyticus ATCC 17982] Length = 419 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65 PREI L+ ++IGQ AKRA+++A+ N ++R + + D L K NILL+GPTG G Sbjct: 65 PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREAGNAEDMLGTKSNILLLGPTGTG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LARL PF V+ T TE GYVG +VE I+ L+ A ++++ + Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF S DL +P Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAEDLHKFGMIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ K L + D +LT+ ++L+ QY+ L + + + L+FT +++ A+A A Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMELEFTHEALLAIAARA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 N T GAR L ++ME+ L D+ F Sbjct: 359 -NERKT----GARGLSSIMEQTLSDLMF 381 >gi|118497647|ref|YP_898697.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. novicida U112] gi|194323618|ref|ZP_03057394.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella tularensis subsp. novicida FTE] gi|118423553|gb|ABK89943.1| ATP-dependent Clp protease subunit X [Francisella novicida U112] gi|194321982|gb|EDX19464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella tularensis subsp. novicida FTE] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|21221074|ref|NP_626853.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces coelicolor A3(2)] gi|23813896|sp|Q9F316|CLPX_STRCO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|10280517|emb|CAC09993.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces coelicolor A3(2)] Length = 428 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGAQIRSKREIESKDQFEQVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYERLFELDGVELDFERGALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404 >gi|172039351|ref|YP_001805852.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. ATCC 51142] gi|226708146|sp|B1WUD2|CLPX_CYAA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|171700805|gb|ACB53786.1| ATP-dependent Clp protease, ATPase subunit [Cyanothece sp. ATCC 51142] Length = 435 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P EI LD Y+IGQ +AK+ +++A+ N ++R L DE L NILL+GPTG Sbjct: 76 PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKNDEDNIELQKSNILLMGPTGS 135 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 136 GKTLLAQTLAQVLEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 190 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 61/221 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 191 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 250 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R ADL+ Sbjct: 251 DTSNILFICGGAFVGLERVIEQRIGKKSMGFVRPGEGQSKEKRAADLMQRVEPDDLVKFG 310 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L + ILT + L+ QY++L+ + + L+F+++++ A+A Sbjct: 311 MIPEFVGRIPVMAALNPLTEETLVAILTKPRNALVKQYQKLLNMDNVELEFSQEAVKAIA 370 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A + GAR L+ ++E ++ D+ + S D+Q+ Sbjct: 371 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVQK 406 >gi|168704277|ref|ZP_02736554.1| ATP-dependent protease ATP-binding subunit [Gemmata obscuriglobus UQM 2246] Length = 433 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD-ELMPKNILLVGPTGVG 65 +PR I +LD Y+IGQQ AK+ +++A+ N ++R L PA + E+ NIL VGPTG G Sbjct: 81 APRTIKEKLDGYVIGQQRAKKVLSVAVHNHYKRLSLDPASRHEVEIEKSNILFVGPTGSG 140 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++R LA++ PF + T TE GYVG +VE ++ L+ A Sbjct: 141 KTLLARTLAKILDVPFAIGDATTLTEAGYVGEDVENLLLKLLHAA 185 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GI+++DE DKI I VS EGVQ+ LL ++EG+ +Y + Sbjct: 195 GIIYIDEIDKIAKTSQNVSITRDVSGEGVQQALLKMLEGTVSNVPPQGGRKHPEQQYIQV 254 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PAD------L 312 +T +ILFI G F +SR AD + Sbjct: 255 DTSNILFICGGTFVGLEDIISRRLGRKSIGFGAVDQEQREKSLGELLSQVTADDLIEFGM 314 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ ILT+ ++ L+ QY++L + EG ++F I+AL + Sbjct: 315 IPEFVGRLPVLAPLDPLDEEAMLRILTEPKNALVRQYQKLFEMEGAEVEF---EINALKE 371 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVR 420 +A + D GAR L+ ++E V+ D+ + +++ K VI AE VR Sbjct: 372 IARLAKAR--DTGARGLRAIVEDVMLDVMYDLPEMEHKGKHVITAEVVR 418 >gi|88801526|ref|ZP_01117054.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii 23-P] gi|88782184|gb|EAR13361.1| ATP-dependent protease ATP-binding subunit [Polaribacter irgensii 23-P] Length = 411 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+YIIGQ + KR++++A+ N ++R D D E+ NI+LVG TG GKT Sbjct: 63 PKEIKEFLDQYIIGQDETKRSMSVAVYNHYKRLLQTKDDDDVEIEKSNIVLVGETGTGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +AR+ PF V+ T T+ GYVG +VE I+ L+ A V +++R Sbjct: 123 LVAKTIARMLNVPFAIVDATVLTQAGYVGEDVESILSKLLQTADYDVEKAQR 174 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 56/217 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGTVVNVAPKGGRKHPEQKFVEV 234 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 +T ILFIA GAF +S+ P+DL + Sbjct: 235 DTKEILFIAGGAFSGIERIISKRLNMQAVGFSASLDDDKVDQENLLQYVIPSDLKAFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV ++ L+ R ILT+ ++ ++ QY +L + +G+ ED+++ + + Sbjct: 295 PEIIGRLPVLSYMNPLDAVTLRAILTEPKNAIVKQYAKLFRMDGVEFTIEEDALNYIVEK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 AV +GAR L+++ E + D + EK Sbjct: 355 AVTYK-----LGARGLRSLCEAIFTDAMYELPSSDEK 386 >gi|320010822|gb|ADW05672.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces flavogriseus ATCC 33331] Length = 432 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL----RD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q + RD EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGSNRDDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI + VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408 >gi|308233829|ref|ZP_07664566.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium vaginae DSM 15829] gi|328943801|ref|ZP_08241266.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae DSM 15829] gi|327491770|gb|EGF23544.1| ATP-dependent Clp protease ATP-binding subunit [Atopobium vaginae DSM 15829] Length = 458 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 18/126 (14%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------QQLP 44 +KL +P EI EL +Y++GQ+ AKRA+++A+ N +RR P Sbjct: 75 LKLNNLPTPHEIYDELSQYVMGQEAAKRAMSVAVYNHYRRVMTNDASIDEDINRNDDAKP 134 Query: 45 ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 ++ EL NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ Sbjct: 135 EEV--ELAKSNILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILL 192 Query: 105 DLVDVA 110 L+ A Sbjct: 193 KLITAA 198 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG++ S K+ S I Sbjct: 208 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHI 267 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADL----- 312 NT +ILFI GAF ++R P DL Sbjct: 268 NTQNILFICGGAFVGLDKIVADRIGEKGIGFNAQLARKVDDNQDELMSKVMPQDLHKFGI 327 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV K L + D IL + ++ ++ QYK + + EG+ L+F ++++ +A Sbjct: 328 IPEFIGRIPVITTTKELTEDDLVKILIEPKNAIVKQYKRMFEIEGVELEFKDEALREIAS 387 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 +A+ N+ GAR L+ + E L++ F SDL VV+ E V Sbjct: 388 LALKRNT-----GARGLRAICEATLQNTMFDLPSDLSIVKVVVTKEAV 430 >gi|188581624|ref|YP_001925069.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium populi BJ001] gi|238692872|sp|B1Z9C8|CLPX_METPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|179345122|gb|ACB80534.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium populi BJ001] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGASVQAPDDRRTGEVFRSVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + IL + ++ L+ QY+ L + E + L F ++++ +A Sbjct: 298 IPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D + L + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLDSVEQVVIGPEVV 400 >gi|158317028|ref|YP_001509536.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia sp. EAN1pec] gi|238686843|sp|A8L1X0|CLPX_FRASN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|158112433|gb|ABW14630.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Frankia sp. EAN1pec] Length = 430 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 PREI LD Y++GQ+ AK+ +++A+ N ++R Q EL NILL+GP Sbjct: 64 PREIYEFLDGYVVGQEAAKKTLSVAVYNHYKRVQAGGASGGDAGKGEVELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T ++LFI GAF SR P DLL Sbjct: 242 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASNVFGDIMPEDLLKYGM 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ + +L++ ILT+ ++ L+ QYK L + +G+ LDFT D+++A+AD Sbjct: 302 IPEFIGRLPIITSVSNLDREALIRILTEPKNALVRQYKRLFELDGVDLDFTTDALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLLSVMY 386 >gi|303255354|ref|ZP_07341424.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae BS455] gi|302597722|gb|EFL64798.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae BS455] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|323127108|gb|ADX24405.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 409 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R DE L NIL++GPTG G Sbjct: 64 PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L F +++++A+A+ A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|309799588|ref|ZP_07693814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus infantis SK1302] gi|308116776|gb|EFO54226.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus infantis SK1302] Length = 268 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 56 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREETEDVDLQKSNILMIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 115 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 231 DTKNILFIVGGAF 243 >gi|251782259|ref|YP_002996561.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390888|dbj|BAH81347.1| ATP-dependent protease ATP-binding subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 409 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R DE L NIL++GPTG G Sbjct: 64 PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L F +++++A+A+ A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|254374462|ref|ZP_04989943.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548] gi|151572181|gb|EDN37835.1| hypothetical protein FTDG_00631 [Francisella novicida GA99-3548] gi|332678355|gb|AEE87484.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella cf. novicida Fx1] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|87121307|ref|ZP_01077197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MED121] gi|86163464|gb|EAQ64739.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinomonas sp. MED121] Length = 425 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P ++ LD Y+IGQ+ AKR +A+A+ N ++R + EL NILL+GPTG GK Sbjct: 70 APAKLKFALDEYVIGQEKAKRVLAVAVYNHYKRLKHQGKTDGVELGKSNILLIGPTGSGK 129 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 130 TLLAQTLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLL 170 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 65/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H DL Sbjct: 243 DTSNILFICGGAFAGLDRVISDRTEKGSIGFSAVVKSKEEDKVFSDTVHNVETEDLVKFG 302 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ IL++ ++ L QY+ L + EG+ L+FT +S+ A A Sbjct: 303 LIPEFVGRLPVVATLSELDEEALITILSEPKNALTKQYQHLFELEGVELEFTTESLQAAA 362 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVR 420 ++A+ + GAR L++++E L D + DL +T VV+DA ++ Sbjct: 363 ELALERKT-----GARGLRSILESALLDCMY---DLPSRTDVVKVVMDANSMK 407 >gi|323140767|ref|ZP_08075686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phascolarctobacterium sp. YIT 12067] gi|322414785|gb|EFY05585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phascolarctobacterium sp. YIT 12067] Length = 416 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRD-ELMPKNILLVGPTG 63 P+EI + LD Y+IGQ +AK+ +++A+ N ++R Q P RD EL NIL++GPTG Sbjct: 67 PQEIKAILDEYVIGQDEAKKTLSVAVYNHYKRINYEIQNPESKRDLELQKSNILMLGPTG 126 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 SGKTLLAQTLAKILQVPFAIADATTLTEAGYVGEDVENILLKLISNA 173 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 60/233 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G +I Sbjct: 183 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPKGGRKHPHQEFINI 242 Query: 292 NTDHILFIASGAF----HVSR------------------------------PADLL---- 313 +T +ILFI GAF H+ P D++ Sbjct: 243 DTTNILFICGGAFAGLEHIINARVGKKNLGFGADIRRKEEVDNEAVFAKVLPEDIMKFGI 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L+++ ILT+ + L+ QY+ ++ +G+ L+F ++ A+A+ Sbjct: 303 IPEFAGRMPVVVTLNPLDEAALVQILTEPRNALVKQYQRFLEMDGVELEFEPGALTAIAE 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVRLHI 423 A+ N+ GAR L++++E + ++ + + D K +V +A +R H Sbjct: 363 EALKRNA-----GARGLRSIIESTMRNVMYDVPSRDDVTKCIVTEA-TIRQHC 409 >gi|261868694|ref|YP_003256616.1| ATP-dependent protease ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414026|gb|ACX83397.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aggregatibacter actinomycetemcomitans D11S-1] Length = 413 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ A++ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 64 TPHQIRAHLDDYVIGQDYAQKVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ +AR+ PF + T TE GYVG +VE +++ L+ Sbjct: 124 TLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLL 164 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S+ + G I Sbjct: 177 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRI 236 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 237 DTSKILFICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKY 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ ILT+ ++ L QY+ L E + L+FT +++ A+ Sbjct: 297 GLIPEFIGRLPVVAPLSELDEEALVRILTEPKNALCKQYQALFGLEEVALEFTNEALTAM 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E VL D + L+ K VV++ Sbjct: 357 AKKALARKT-----GARGLRSIIEGVLLDTMYDLPSLEGLKKVVVN 397 >gi|225389280|ref|ZP_03759004.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme DSM 15981] gi|225044659|gb|EEG54905.1| hypothetical protein CLOSTASPAR_03026 [Clostridium asparagiforme DSM 15981] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ +AK+ +++A+ N ++R + ++ NIL++GPTG GK Sbjct: 68 LKPKEIKTFLDEYVIGQDEAKKVLSVAVYNHYKRVTACQHVDVDVQKSNILMIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 TYLAQTLAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 180 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 239 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF P DL Sbjct: 240 IDTTNILFIVGGAFDGLEKIVEARLSAGSIGFNAEIVDKNDMNIDELLKKVEPKDLTKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L+SL + IL++ ++ LI QY++L++ + + L+FT ++++ +A Sbjct: 300 LIPEFIGRVPVNVSLQSLTRDAMVRILSEPKNALIKQYQKLLELDNVKLEFTPEALEEIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV+ IGAR L++++E V+ D+ + Sbjct: 360 QLAVDRK-----IGARGLRSIIEGVMMDLMY 385 >gi|208779708|ref|ZP_03247052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella novicida FTG] gi|254373012|ref|ZP_04988501.1| hypothetical protein FTCG_00586 [Francisella tularensis subsp. novicida GA99-3549] gi|151570739|gb|EDN36393.1| hypothetical protein FTCG_00586 [Francisella novicida GA99-3549] gi|208744163|gb|EDZ90463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella novicida FTG] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVSIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|157826919|ref|YP_001495983.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia bellii OSU 85-389] gi|166215197|sp|A8GVR9|CLPX_RICB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157802223|gb|ABV78946.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii OSU 85-389] Length = 427 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A N+ + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQK 175 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312 +T +ILFI GAF SR + L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ Q+K+ + + L + +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLDDLDKEALVTILTKPKNAIVKQFKKQFELDEAELIVEDSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E +L D + ++L+++ V I + V+ Sbjct: 356 KALAKKT-----GARGLRSIIEHLLLDSMYKVAELKKQRVTITEDVVK 398 >gi|110769975|ref|XP_001122528.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Apis mellifera] Length = 361 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAI 69 EI +LD+Y+IGQ+ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GKT + Sbjct: 2 EIKKQLDQYVIGQERAKKILSVAVYNHYKRVTQMDVDSSTELQKSNIALIGPTGSGKTYL 61 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 62 AQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 102 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 112 GIIYIDEIDKISKKSENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQELIQI 171 Query: 292 NTDHILFIASGAF----------------------HVSRPAD----------------LL 313 NT +ILFI GAF +++ D L+ Sbjct: 172 NTTNILFIVGGAFDGIEQIVKSRLGKKVIGFSAENELNKVQDDSWTKHLTTGDLVKFGLI 231 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+++D ILT+ ++ L+ QYK+LM + + L+FT D++ A+AD+ Sbjct: 232 PEFIGRIPIIATLDKLDRNDLVRILTEPKNALVKQYKKLMSLDQVNLEFTPDALKAIADL 291 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ N +GAR L+T++E + I + Sbjct: 292 AIDRN-----MGARGLRTIIENAMMGIMY 315 >gi|94676789|ref|YP_588714.1| ATP-dependent protease ATP-binding subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166214757|sp|Q1LTK0|CLPX_BAUCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|94219939|gb|ABF14098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 421 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + L+ Y+IGQ+ AK+ +A+A+ N ++R + EL NILL+GPTG GK Sbjct: 66 TPHDINNHLNNYVIGQEQAKKVLAVAVYNHYKRLHHDTSHNNVELGKSNILLIGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR PF + T TE GYVG +VE I+ L+ Sbjct: 126 TLLADTLARFLHVPFTMADATTLTEAGYVGEDVENILHQLL 166 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 60/227 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGS 290 +GIV++DE DKI + I VS EGVQ+ LL L+EG+ + + Sbjct: 178 HGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPHGGRKHPQQDFLK 237 Query: 291 INTDHILFIASGAFH-----VSR-------------------------------PADL-- 312 ++T ILFI GAF + R P DL Sbjct: 238 VDTSKILFICGGAFDGLDKVIERRMDTNNSIGFSAIIKLGSDQLNEDKLLTQVEPEDLVK 297 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L L++ IL + ++ L QY+ L EG+ L+F+E+++ A Sbjct: 298 FGLIPEFIGRLPVVATLNELSEEALIRILREPKNALTKQYQALFNLEGVELEFSEEALIA 357 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 +A A+ + GAR L++++E +L + + S L + V+I+ Sbjct: 358 IAKKAMARKT-----GARGLRSIVEGILLETMYELPSQLHVEKVIIN 399 >gi|56707750|ref|YP_169646.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. tularensis SCHU S4] gi|110670221|ref|YP_666778.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. tularensis FSC198] gi|224456820|ref|ZP_03665293.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. tularensis MA00-2987] gi|254370253|ref|ZP_04986259.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874563|ref|ZP_05247273.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella tularensis subsp. tularensis MA00-2987] gi|61211391|sp|Q5NH46|CLPX_FRATT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56604242|emb|CAG45258.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. tularensis SCHU S4] gi|110320554|emb|CAL08641.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. tularensis FSC198] gi|151568497|gb|EDN34151.1| hypothetical protein FTBG_01378 [Francisella tularensis subsp. tularensis FSC033] gi|254840562|gb|EET18998.1| ATP-dependent clp protease ATP-binding subunit clpX [Francisella tularensis subsp. tularensis MA00-2987] gi|282158921|gb|ADA78312.1| ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis NE061598] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + +D Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|148993405|ref|ZP_01822922.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP9-BS68] gi|194397730|ref|YP_002038201.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae G54] gi|238690843|sp|B5E6L2|CLPX_STRP4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147927960|gb|EDK78980.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP9-BS68] gi|194357397|gb|ACF55845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae G54] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRMGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|85373055|ref|YP_457117.1| ATP-dependent protease ATP-binding subunit ClpX [Erythrobacter litoralis HTCC2594] gi|122545320|sp|Q2NDC1|CLPX_ERYLH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|84786138|gb|ABC62320.1| ATP-dependent Clp protease ATPase subunit [Erythrobacter litoralis HTCC2594] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + L+ Y+IGQ AKR +++A+ N ++R + EL NILLVGPTG GK Sbjct: 66 APSEICATLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKADGVELAKSNILLVGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE II L+ + Sbjct: 126 TLLAQTLARTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 58/230 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 177 QHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HV--------------SRPADLL-- 313 ++T +ILFI GAF HV S P DLL Sbjct: 237 QVDTTNILFICGGAFAGLDKIIADRLQKRSIGFGAHVADPDKRKVGELLEKSEPEDLLKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+ IL + ++ ++ QY +L + E + L FT++++ A+ Sbjct: 297 GLIPEFVGRLPVIATLHDLDVDALVTILQEPKNAIVKQYSKLFELEDVELTFTDEALQAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ A+ L T GAR L++++E +L D F DL + VVIDA+ V Sbjct: 357 AERAI-LRKT----GARGLRSIVEGILLDTMFDLPDLDDISEVVIDADVV 401 >gi|15901412|ref|NP_346016.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] gi|15903470|ref|NP_359020.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae R6] gi|116517127|ref|YP_816859.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae D39] gi|148984921|ref|ZP_01818174.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP3-BS71] gi|148997363|ref|ZP_01824968.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP11-BS70] gi|149007515|ref|ZP_01831150.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|149007878|ref|ZP_01831465.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|149012698|ref|ZP_01833674.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP19-BS75] gi|149022039|ref|ZP_01836001.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP23-BS72] gi|168483552|ref|ZP_02708504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1873-00] gi|168486832|ref|ZP_02711340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1087-00] gi|168491537|ref|ZP_02715680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC0288-04] gi|168493474|ref|ZP_02717617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC3059-06] gi|168575233|ref|ZP_02721196.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae MLV-016] gi|225855011|ref|YP_002736523.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae JJA] gi|225857195|ref|YP_002738706.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae P1031] gi|225859326|ref|YP_002740836.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae 70585] gi|237650252|ref|ZP_04524504.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae CCRI 1974] gi|237820865|ref|ZP_04596710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae CCRI 1974M2] gi|303260196|ref|ZP_07346168.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP-BS293] gi|303262587|ref|ZP_07348528.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS292] gi|303264989|ref|ZP_07350904.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS397] gi|303266452|ref|ZP_07352340.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS457] gi|303269034|ref|ZP_07354816.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS458] gi|307068212|ref|YP_003877178.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus pneumoniae AP200] gi|54036857|sp|P63792|CLPX_STRR6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54040895|sp|P63791|CLPX_STRPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|122278295|sp|Q04JH9|CLPX_STRP2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763865|sp|C1C8G0|CLPX_STRP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763868|sp|C1CFF2|CLPX_STRZJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763869|sp|C1CLR8|CLPX_STRZP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|14973060|gb|AAK75656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae TIGR4] gi|15459081|gb|AAL00231.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Streptococcus pneumoniae R6] gi|116077703|gb|ABJ55423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae D39] gi|147756418|gb|EDK63459.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP11-BS70] gi|147760605|gb|EDK67579.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|147760874|gb|EDK67844.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP18-BS74] gi|147763298|gb|EDK70236.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP19-BS75] gi|147922943|gb|EDK74059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP3-BS71] gi|147929883|gb|EDK80872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP23-BS72] gi|172043151|gb|EDT51197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1873-00] gi|183570188|gb|EDT90716.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC1087-00] gi|183574196|gb|EDT94724.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC0288-04] gi|183576310|gb|EDT96838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae CDC3059-06] gi|183578742|gb|EDT99270.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae MLV-016] gi|225722023|gb|ACO17877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 70585] gi|225723578|gb|ACO19431.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae JJA] gi|225725234|gb|ACO21086.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae P1031] gi|301794578|emb|CBW37022.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae INV104] gi|301800400|emb|CBW33031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae OXC141] gi|301802287|emb|CBW35039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae INV200] gi|302636304|gb|EFL66798.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP14-BS292] gi|302638693|gb|EFL69156.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP-BS293] gi|302641424|gb|EFL71789.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS458] gi|302644030|gb|EFL74289.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS457] gi|302645508|gb|EFL75740.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae BS397] gi|306409749|gb|ADM85176.1| ATP-dependent protease Clp, ATPase subunit [Streptococcus pneumoniae AP200] gi|332199613|gb|EGJ13688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA41317] gi|332201010|gb|EGJ15081.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA47901] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|220934116|ref|YP_002513015.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thioalkalivibrio sp. HL-EbGR7] gi|254763871|sp|B8GNT9|CLPX_THISH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219995426|gb|ACL72028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thioalkalivibrio sp. HL-EbGR7] Length = 425 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 3/101 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P EI LD Y+IGQ AK+ +A+A+ N ++R + + +DE L NILL+GPTG GK Sbjct: 68 PHEIKKILDEYVIGQDRAKKILAVAVYNHYKRLE-ARNSKDEVELAKSNILLIGPTGSGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 TLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH-----------------------------VSR------PADLL--- 313 +T +ILFI GAF VSR P DL+ Sbjct: 240 DTHNILFIVGGAFAGLDKVIRDRTEKGGIGFSAKVKSKEEKGPVSRTLSGVEPEDLIKYG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L++ ILT+ ++ L QY +L + EG+ ++F ED++ A+A Sbjct: 300 LIPEFVGRLPVVATLEELDEDALIQILTEPKNALTKQYGKLFEMEGVDIEFREDALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+T++E+VL D + + VVID +R Sbjct: 360 AKAMERKT-----GARGLRTILEQVLLDTMYDLPSTENVSKVVIDDAVIR 404 >gi|254392446|ref|ZP_05007627.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces clavuligerus ATCC 27064] gi|326440936|ref|ZP_08215670.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces clavuligerus ATCC 27064] gi|197706114|gb|EDY51926.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces clavuligerus ATCC 27064] Length = 427 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ VR ++ Sbjct: 362 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 408 >gi|322517186|ref|ZP_08070069.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus vestibularis ATCC 49124] gi|322124245|gb|EFX95761.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus vestibularis ATCC 49124] Length = 408 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+E++ L+ Y++GQ AKRA+++A+ N ++R D +L NIL++GPTG G Sbjct: 63 PKELLDILNNYVVGQDRAKRALSVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 KTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D+++A+A A Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F ++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390 >gi|226307300|ref|YP_002767260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus erythropolis PR4] gi|229493247|ref|ZP_04387039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus erythropolis SK121] gi|259491266|sp|C1A1N6|CLPX_RHOE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226186417|dbj|BAH34521.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus erythropolis PR4] gi|229319978|gb|EEN85807.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rhodococcus erythropolis SK121] Length = 426 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH-----------------------------VSR-----PADLL---- 313 +T ++LFI +GAF V R P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAELDTVDRFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ + +L+K IL++ ++ L+ QY+ L +G+ L+FTE+++DA+AD Sbjct: 301 IPEFIGRLPMIASVTNLDKESLVQILSEPKNALVKQYRRLFDMDGVELEFTEEALDAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ L T GAR L+ +ME VL + + S D+++ VV+ AE V Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVTAETV 403 >gi|210617499|ref|ZP_03291602.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787] gi|210149286|gb|EEA80295.1| hypothetical protein CLONEX_03824 [Clostridium nexile DSM 1787] Length = 478 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 69/112 (61%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I ++LD Y+IGQ+ AK+A+++A+ N ++R E+ N+L++GPTG GKT Sbjct: 128 APHKIKAQLDDYVIGQEYAKKAISVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKT 187 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LARL P + T TE GY+G ++E ++ L+ A N V ++ R Sbjct: 188 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAER 239 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++NT Sbjct: 240 GIIFIDEIDKIAKKKNTNQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 299 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 300 KNILFICGGAFPDLEQIIKERLNKQASMGFIADLKDKYNNDKDILSKVTVEDIRNFGMIP 359 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L++ IL + ++ ++ QY++L++ + + L+F E+++ A+A A Sbjct: 360 EFIGRLPIIFTLQGLDEDMLVKILKEPKNAILKQYQKLLELDEVKLNFDEEALHAIARKA 419 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L++++E + DI + D V I EY+ Sbjct: 420 MK-----KDTGARALRSIIEEFMLDIMYEIPKDDNIGQVTITKEYI 460 >gi|157165299|ref|YP_001467559.1| ATP-dependent protease ATP-binding subunit [Campylobacter concisus 13826] gi|112801142|gb|EAT98486.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter concisus 13826] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 +P+E+ + LD Y+IGQ AK+ ++ + N ++R +D++D E+ NILLVGPTG Sbjct: 60 LTPKELKAVLDNYVIGQDRAKKVFSVGVYNHYKRIFKQSDIKDDTEISKSNILLVGPTGS 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR P + T TE GYVG +VE I+ L+ A V+++ + Sbjct: 120 GKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAANGDVKKAEQ 174 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 55/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 175 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 234 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILF+ GAF + P DL +P Sbjct: 235 DTTNILFVCGGAFDGLLDIIERRVGKNVLGFNQEKRGKNEKENLLSLLEPDDLVKYGLIP 294 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + K D ILT+ ++ ++ QY++L +G L F +++++ +A +A Sbjct: 295 ELIGRLHVVATLNEITKEDMVKILTEPKNAILKQYQKLCAIDGATLKFDDEALEEIASLA 354 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + + GAR L+++ME ++ DI + +L++ +VI E V+ Sbjct: 355 IERKT-----GARGLRSIMEELMTDIMYDLPELKDYDIVISKETVK 395 >gi|91205314|ref|YP_537669.1| ATP-dependent protease ATP-binding subunit [Rickettsia bellii RML369-C] gi|122425788|sp|Q1RJ84|CLPX_RICBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91068858|gb|ABE04580.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia bellii RML369-C] Length = 427 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I S L+ Y++GQ+ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICSVLNDYVVGQEQAKKVLAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A N+ + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLQAAEFNVAKAQK 175 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312 +T +ILFI GAF SR + L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNNSSIGFAANVNIDKEKINREILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ Q+K+ + + L + +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLDDLDKEALVTILTKPKNAIVKQFKKQFELDEAELIVEDSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ + GAR L++++E +L D + ++L+++ V I + V+ Sbjct: 356 KALAKKT-----GARGLRSIIEHLLLDSMYKVAELKKQRVTITEDVVK 398 >gi|325000574|ref|ZP_08121686.1| ATP-dependent protease ATP-binding subunit ClpX [Pseudonocardia sp. P1] Length = 429 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 P EI LD+Y++GQ D KR +++A+ N ++R Q LR E+ NIL++ Sbjct: 64 PAEIHDFLDQYVVGQPDTKRTLSVAVYNHYKRIQAGERLRASGNGDGDGIEIAKSNILML 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GPTGCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 184 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 243 Query: 292 NTDHILFIASGAF---------HVSR----------------PAD--------------L 312 +T ++LFI +GAF V + PA+ L Sbjct: 244 DTTNVLFIVAGAFAGLERIIGERVGKSGIGFGADIRSKKDMDPAESFAETLPEDLIKFGL 303 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + SL+K ILT+ + L+ QY++L + +G+ LDF E++++A+AD Sbjct: 304 IPEFIGRLPIVASVTSLDKDALVKILTEPRNALVKQYRKLFEMDGVELDFAEEALEAVAD 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423 +A+ L T GAR L+ +ME VL + + S D+ + VV+ A+ V+ ++ Sbjct: 364 LAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVVTAQTVKENV 410 >gi|319947979|ref|ZP_08022156.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea P4] gi|319438325|gb|EFV93268.1| ATP-dependent protease ATP-binding subunit ClpX [Dietzia cinnamea P4] Length = 422 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI + LD Y++GQ AKR +A+A+ N ++R ++ A L EL NIL++GPTG Sbjct: 64 PAEIHAFLDEYVVGQDAAKRNLAVAVYNHYKRIRVGAALGRGDGVELAKSNILMLGPTGC 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 169 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAFH---------VSR-------------------------PADL----- 312 +T ++LFI +GAF V R P DL Sbjct: 239 DTSNVLFIVAGAFQGLEKIVGDRVGRKGLGFGAEVASKNELDTTDNFSEVMPEDLVKFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + SL++ IL + ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 299 IPEFIGRLPVVATVTSLDREALVNILAEPKNALVKQYARLFEMDGVELEFTQDALEAVAD 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ L T GAR L+ +ME VL + + + VV+ E VR Sbjct: 359 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPGRDDVARVVVTGETVR 402 >gi|148244364|ref|YP_001219058.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Vesicomyosocius okutanii HA] gi|146326191|dbj|BAF61334.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Vesicomyosocius okutanii HA] Length = 431 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTG 63 ++++P+++ S L+ Y+IGQ+ AK+ +++A+ N ++R Q + EL NIL++GPTG Sbjct: 68 WDYTPKQLTSFLNDYVIGQEHAKKVLSVAVYNHYKRLQNDHISNEVELDKSNILMIGPTG 127 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF + T TE GYVG +VE ++++L+ Sbjct: 128 SGKTLLAQTLARILDIPFTVADATTLTEAGYVGDDVENVVKNLL 171 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI R I VS EGVQ+ +L L+EG+ SV + G + Sbjct: 184 GIIFIDEIDKISRRSDSPSITRDVSGEGVQQAMLKLIEGTIASVPPQGGRKHPNQETIDV 243 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T +ILFI GAF + +P DL+ Sbjct: 244 DTSNILFICGGAFDGLDKIINRRVKKVTGIGFSVDVKDQNEEKALSDLFVLIQPEDLIKF 303 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV+ L L++ IL + ++++I Q++E+ EG+ L F + S+ A+ Sbjct: 304 GLIPELVGRLPVQTVLSELDEIALVKILIEPKNSVIKQFQEIFSMEGVKLIFKKPSLLAI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A +A+ + GAR L++++E +L D F L + T VVID V Sbjct: 364 AKLAIKRKT-----GARGLRSILEDLLLDTMFELPSLLDVTEVVIDKTVV 408 >gi|222524927|ref|YP_002569398.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus sp. Y-400-fl] gi|222448806|gb|ACM53072.1| Sigma 54 interacting domain protein [Chloroflexus sp. Y-400-fl] Length = 429 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR++ LD+Y+IGQ AK A+A+A+ N ++R + A + D E+ NILL+GPTG GK Sbjct: 72 TPRKLRERLDQYVIGQDRAKIALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +ARL PF + T TE GYVG +VE I+ L+ A Sbjct: 132 TLLAQTMARLLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 175 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG +Y Sbjct: 185 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPF 244 Query: 292 NTDHILFIASGAFH-VSR---------------------------------PADLL---- 313 +T ++LFI GAF +++ P DL+ Sbjct: 245 DTTNVLFICGGAFEGITKIIAKRLRGKQLIGFGSNPVNPVEEEGALLAQITPDDLMHFGF 304 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L+ L++ ILT+ + +I QY++L + L+FT DS++A+ D Sbjct: 305 IPEFVGRLPVIVALEPLSREAMLRILTEPRNAIIKQYQKLFALDHCELEFTPDSLEAIVD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E VL D+ F Sbjct: 365 RAMAART-----GARALRSIVEEVLLDVMF 389 >gi|170751515|ref|YP_001757775.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium radiotolerans JCM 2831] gi|238688765|sp|B1LW29|CLPX_METRJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|170658037|gb|ACB27092.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium radiotolerans JCM 2831] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGATVQAPDDRRTGEIFRSVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ + IL + ++ L+ QY+ L + E + L F ++++ +A Sbjct: 298 IPEFVGRLPVLATLEDLDEAALKKILQEPKNALVKQYQRLFEMENVDLTFQDEALSLVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D + L+ + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVV 400 >gi|322411594|gb|EFY02502.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 409 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R DE L NIL++GPTG G Sbjct: 64 PKELLEVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L F +++++A+A+ A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|296876431|ref|ZP_06900483.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 15912] gi|312866721|ref|ZP_07726935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parasanguinis F0405] gi|296432721|gb|EFH18516.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 15912] gi|311097802|gb|EFQ56032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus parasanguinis F0405] Length = 410 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+ EL NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREDETDVELQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381 >gi|292487468|ref|YP_003530340.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Erwinia amylovora CFBP1430] gi|292898710|ref|YP_003538079.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora ATCC 49946] gi|291198558|emb|CBJ45666.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora ATCC 49946] gi|291552887|emb|CBA19932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia amylovora CFBP1430] Length = 424 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y++GQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGIGIGFSASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILREPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|183603154|ref|ZP_02712907.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP195] gi|183572734|gb|EDT93262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP195] Length = 402 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 56 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 170 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373 >gi|89256250|ref|YP_513612.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. holarctica LVS] gi|156502311|ref|YP_001428376.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010853|ref|ZP_02275784.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella tularensis subsp. holarctica FSC200] gi|254367563|ref|ZP_04983589.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. holarctica 257] gi|254369240|ref|ZP_04985252.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. holarctica FSC022] gi|89144081|emb|CAJ79332.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. holarctica LVS] gi|134253379|gb|EBA52473.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. holarctica 257] gi|156252914|gb|ABU61420.1| ATP-dependent Clp protease, ATP-binding subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122190|gb|EDO66330.1| ATP-dependent Clp protease subunit X [Francisella tularensis subsp. holarctica FSC022] Length = 417 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|56460112|ref|YP_155393.1| ATP-dependent protease ATP-binding subunit ClpX [Idiomarina loihiensis L2TR] gi|61211402|sp|Q5QXN9|CLPX_IDILO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56179122|gb|AAV81844.1| ATP-dependent protease Clp, ATPase subunit [Idiomarina loihiensis L2TR] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 61/99 (61%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+ I LD Y+IGQ AK+ +++A+ N ++R + A EL NILL+GPTG GKT Sbjct: 67 PKAIRKHLDDYVIGQDRAKKVLSVAVYNHYKRLRGSAKQEVELGKSNILLIGPTGSGKTF 126 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 LAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLL 165 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAFH---------------------------------VSR--PADL---- 312 +T ILFI GAF +++ P DL Sbjct: 238 DTSKILFICGGAFAGLNKVIEQRLSTGTGIGFGAEVKSKTQSEEGAIIAKVEPEDLVRYG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L L++ IL + ++ L QY L + E + L+F ED++ A+A Sbjct: 298 LIPEFIGRLPVVATLDELDEEALIEILREPKNALTKQYSALFEMEDVELEFREDALRAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L++++E VL Sbjct: 358 KKAMARKT-----GARGLRSIVEGVL 378 >gi|28572441|ref|NP_789221.1| ATP-dependent protease ATP-binding subunit [Tropheryma whipplei TW08/27] gi|46576526|sp|Q83MI6|CLPX_TROW8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28410572|emb|CAD66959.1| ATP dependent Clp Protease ATP binding subunit [Tropheryma whipplei TW08/27] Length = 423 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 4/111 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P EI + LD Y+IGQQ AKR +++A+ N ++R + ++ EL NILL+GPTG G Sbjct: 71 PAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGCG 130 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115 KT +++ LAR+ PF + T TE GYVG +VE ++ L+ D +I R Sbjct: 131 KTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDITR 181 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKY--GSI 291 GIV +DE DKI + I VS EGVQ+ LL ++EG++ S T+Y SI Sbjct: 185 GIVCIDEIDKISRKADSPSITRDVSGEGVQQALLKILEGTAASVPLQGGKKHTQYEQASI 244 Query: 292 NTDHILFIASGAF---------HVSR---------------------PADL-----LPEI 316 NT +ILFI +GAF + R P DL +PE Sbjct: 245 NTRNILFIVAGAFSGIEEIISSRIGRSNMGFGSDLLRKDTDVFDQILPEDLRKFGLIPEF 304 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ + L+ D +LT+ ++ L+ QYK L +G+ L F ++++A+ ++A+ Sbjct: 305 IGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALK 364 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L++VME +L I F S D++ +V I AE V Sbjct: 365 RKT-----GARALRSVMESILSPIMFDVPSRGDIE--SVRITAETV 403 >gi|315174262|gb|EFU18279.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX1346] Length = 468 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%) Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152 I + +D+ I+ E DE VRE + + IL+ L +G+ T V Sbjct: 85 ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 K++ E + + D+E+ SN + G G L++ +K + S+ Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270 + + D + L+ + +++ E GI+++DE DKI + I VS EG Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257 Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304 VQ+ LL ++EG+ S ++ I+T ++LFI GAF Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317 Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341 H+ P DLL PE GR PV L L D ILT+ Sbjct: 318 IGFGKTNSTLNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L+ QY++L+ + L+F +++ A+A A+ N+ GAR L++++E ++ D+ Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431 Query: 402 F 402 F Sbjct: 432 F 432 >gi|163851840|ref|YP_001639883.1| ATP-dependent protease ATP-binding subunit [Methylobacterium extorquens PA1] gi|218530632|ref|YP_002421448.1| ATP-dependent protease ATP-binding subunit ClpX [Methylobacterium chloromethanicum CM4] gi|240139004|ref|YP_002963479.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens AM1] gi|254561599|ref|YP_003068694.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens DM4] gi|238687353|sp|A9W5F6|CLPX_METEP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763853|sp|B7KNT1|CLPX_METC4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|163663445|gb|ABY30812.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium extorquens PA1] gi|218522935|gb|ACK83520.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylobacterium chloromethanicum CM4] gi|240008976|gb|ACS40202.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens AM1] gi|254268877|emb|CAX24838.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylobacterium extorquens DM4] Length = 423 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI LD Y+IGQ AK+ +++A+ N ++R D EL NI+L+GPTG GK Sbjct: 65 TPKEIRRVLDDYVIGQDFAKKVLSVAVHNHYKRLAHATKHNDVELAKSNIMLIGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ + N+ R R Sbjct: 125 TLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYNVERAQR 177 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 178 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF V P D L Sbjct: 238 DTTNILFICGGAFAGLERIISQRGKGTSIGFGASVQAPDDRRTGEVFRSVEPEDLLKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ + IL + ++ L+ QY+ L + E + L F ++++ +A Sbjct: 298 IPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALSLVAR 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D + L+ + VVI E V Sbjct: 358 KAIERKT-----GARGLRSILETILLDTMYDLPGLESVEQVVIGPEVV 400 >gi|322389613|ref|ZP_08063161.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 903] gi|321143612|gb|EFX39042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus parasanguinis ATCC 903] Length = 410 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----ELMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+ EL NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREDETDVELQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMMDVMF 381 >gi|292487470|ref|YP_003530342.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Erwinia amylovora CFBP1430] gi|292898712|ref|YP_003538081.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora ATCC 49946] gi|291198560|emb|CBJ45668.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia amylovora ATCC 49946] gi|291552889|emb|CBA19934.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia amylovora CFBP1430] gi|312171575|emb|CBX79833.1| ATP-dependent Clp protease ATP-binding subunit clpX2 [Erwinia amylovora ATCC BAA-2158] Length = 424 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI LD Y++GQ+ AK+ +++A+ N ++R LR+ EL NILL+G Sbjct: 66 TPHEIRHHLDDYVVGQERAKKVLSVAVYNHYKR------LRNGDTSNGIELGKSNILLIG 119 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ +ARL PF + T TE GYVG +VE II+ L+ V++++R Sbjct: 120 PTGSGKTLLAETMARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH-----VSRPAD----------------------------------- 311 +T ILFI GAF VS+ D Sbjct: 239 DTSKILFICGGAFAGLDKVVSQRVDSGIGIGFSASVKGKSEKATEGELLAQVEPEDLIKF 298 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E+++ A+ Sbjct: 299 GLIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFREEALKAI 358 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 359 ANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 399 >gi|148988623|ref|ZP_01820056.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP6-BS73] gi|147925824|gb|EDK76899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae SP6-BS73] Length = 410 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIEFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|148272647|ref|YP_001222208.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166214771|sp|A5CR08|CLPX_CLAM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147830577|emb|CAN01512.1| ATP-dependent protease, ATP-binding subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 426 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60 P+EI LD Y+IGQ+ AKRA+++A+ N ++R + PA+ E+ NILL+G Sbjct: 66 PKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAETVGDEIEIAKSNILLIG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314 +T ++LFI +GAF +S+ P DL +P Sbjct: 245 DTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDVNADVFGEVLPEDLHKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT + L+ QY+ + + +G+ L+F + +++++AD+A Sbjct: 305 EFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFELDGVELEFEQGALESIADLA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 V L T GAR L+ ++E VL I F SD + VVI E V Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMFDIPSDDEVGRVVITRESV 405 >gi|28493446|ref|NP_787607.1| ATP-dependent protease ATP-binding subunit ClpX [Tropheryma whipplei str. Twist] gi|46576524|sp|Q83G50|CLPX_TROWT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28476487|gb|AAO44576.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei str. Twist] Length = 423 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 4/111 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P EI + LD Y+IGQQ AKR +++A+ N ++R + ++ EL NILL+GPTG G Sbjct: 71 PAEIYAFLDEYVIGQQKAKRDLSVAVYNHYKRLVSTKSESENEVELSKSNILLIGPTGCG 130 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115 KT +++ LAR+ PF + T TE GYVG +VE ++ L+ D +I R Sbjct: 131 KTYLAQTLARMLRVPFAVADATALTEAGYVGDDVENVLLKLLQDADFDITR 181 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 58/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS---------TKY--GSI 291 GIV +DE DKI + I VS EGVQ+ LL ++EG+ S T+Y SI Sbjct: 185 GIVCIDEIDKISRKADSPSITRDVSGEGVQQALLKILEGTVASVPLQGGKKHTQYEQASI 244 Query: 292 NTDHILFIASGAF---------HVSR---------------------PADL-----LPEI 316 NT +ILFI +GAF + R P DL +PE Sbjct: 245 NTRNILFIVAGAFSGIEEIISSRIGRSNMGFGSDLLRKDTDVFDQILPEDLRKFGLIPEF 304 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ + L+ D +LT+ ++ L+ QYK L +G+ L F ++++A+ ++A+ Sbjct: 305 IGRLPIVTAISHLDGEDMIRVLTEPKNALVKQYKRLFSLDGVSLGFDHEALEAIVELALK 364 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 + GAR L++VME +L I F S D++ +V I AE V Sbjct: 365 RKT-----GARALRSVMESILSPIMFDVPSRGDIE--SVRITAETV 403 >gi|329572811|gb|EGG54439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX1467] Length = 468 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 154/361 (42%), Gaps = 73/361 (20%) Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152 I + +D+ I+ E DE VRE + + IL+ L +G+ T V Sbjct: 85 ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 K++ E + + D+E+ SN + G G L++ +K + S+ Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270 + + D + L+ + +++ E GI+++DE DKI + I VS EG Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257 Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304 VQ+ LL ++EG+ S ++ I+T ++LFI GAF Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317 Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341 H+ P DLL PE GR PV L L D ILT+ Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L+ QY+ L+ + L+F +++ A+A A+ N+ GAR L++++E ++ D+ Sbjct: 377 KNALVKQYQNLLSLDDNKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431 Query: 402 F 402 F Sbjct: 432 F 432 >gi|284047884|ref|YP_003398223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidaminococcus fermentans DSM 20731] gi|283952105|gb|ADB46908.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidaminococcus fermentans DSM 20731] Length = 423 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 7/115 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P+EI + LD Y+IGQ++AK+ +A+A+ N ++R Q D+ EL NIL++GPTG Sbjct: 67 PKEIKAILDEYVIGQEEAKKTLAVAVYNHYKRINYEQGHHQDV--ELQKSNILMLGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A +I R R Sbjct: 125 GKTLLAQTLAKILKVPFAIADATSLTEAGYVGEDVENILLRLIQNADYDIARAER 179 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 180 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQELIQI 239 Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD-----L 312 +T +ILFI GAF P D L Sbjct: 240 DTTNILFICGGAFAGLENVINARTGKKSMGFGAEIPTQAEKKSENPFRQVLPEDFVKYGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L +L++ ILT+ ++ L QY+ L+ + + LDF E ++ A+A Sbjct: 300 IPEFVGRLPVVVTLDNLDEKALIKILTEPKNALTKQYEHLLAMDHVELDFEEGALKAIAH 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 A+ N+ GAR L+ ++E +++++ + + D EK +V Sbjct: 360 EALARNA-----GARGLRAIIEGIMKNVMYEVPSRDNVEKCIV 397 >gi|160890573|ref|ZP_02071576.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492] gi|270295710|ref|ZP_06201910.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. D20] gi|317479885|ref|ZP_07939002.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36] gi|156859572|gb|EDO53003.1| hypothetical protein BACUNI_03016 [Bacteroides uniformis ATCC 8492] gi|270273114|gb|EFA18976.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. D20] gi|316903959|gb|EFV25796.1| ATP-dependent Clp protease [Bacteroides sp. 4_1_36] Length = 414 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTATIDKSNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + + + L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYIKLFEMDNVKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 AV +GAR L++++E ++ D F Q+ V+ +Y + Sbjct: 359 AVEYK-----LGARGLRSIVETIMMDAMFEIPSEQKDNFVVTLDYAK 400 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 67 PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|94987237|ref|YP_595170.1| ATP-dependent protease ATP-binding subunit ClpX [Lawsonia intracellularis PHE/MN1-00] gi|226706637|sp|Q1MQ78|CLPX_LAWIP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|94731486|emb|CAJ54849.1| ATP-dependent protease Clp, ATPase subunit [Lawsonia intracellularis PHE/MN1-00] Length = 417 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61 +P+EI LD Y+IGQ++AK+ +A+A+ N ++R +++ ++ D EL N+LLVGP Sbjct: 59 LTPQEIKERLDEYVIGQEEAKKILAVAVHNHYKRVFYAEKISSEHGDVELEKSNVLLVGP 118 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 119 SGSGKTLLAKTLAKILRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 66/226 (29%) Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284 D+DT + GI+++DE DKI R G I VS EGVQ+ LL ++EG+ ++ Sbjct: 170 DLDTASK---------GIIYIDEIDKISRRSDGPSITRDVSGEGVQQALLKIIEGTEANI 220 Query: 285 STKYGS---------INTDHILFIASGAF--------------------HVS-------- 307 K G +NT +ILFI GAF VS Sbjct: 221 PPKGGRKHPQQEFIRMNTSNILFIVGGAFIGLDKIVEQRIRGGSMGFGAKVSGKKERPLG 280 Query: 308 ------RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 P DL +PE GR PV H+ L++ D +L + ++ L QY++L + + Sbjct: 281 QLLEQVHPNDLVQFGLIPEFVGRIPVLTHVDDLSEEDLVRVLVEPKNALTRQYQKLFELD 340 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + L FT D++ A+A A+ + GAR L+ VME ++ DI + Sbjct: 341 NVTLRFTSDALKAIAHKAIERKT-----GARGLRNVMESIMLDIMY 381 >gi|293382411|ref|ZP_06628348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis R712] gi|293388260|ref|ZP_06632776.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis S613] gi|312908362|ref|ZP_07767326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis DAPTO 512] gi|312910565|ref|ZP_07769407.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis DAPTO 516] gi|291080187|gb|EFE17551.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis R712] gi|291082342|gb|EFE19305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis S613] gi|310625776|gb|EFQ09059.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis DAPTO 512] gi|311289113|gb|EFQ67669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis DAPTO 516] Length = 468 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%) Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152 I + +D+ I+ E DE VRE + + IL+ L +G+ T V Sbjct: 85 ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 K++ E + + D+E+ SN + G G L++ +K + S+ Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270 + + D + L+ + +++ E GI+++DE DKI + I VS EG Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257 Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304 VQ+ LL ++EG+ S ++ I+T ++LFI GAF Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGKKT 317 Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341 H+ P DLL PE GR PV L L D ILT+ Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L+ QY++L+ + L+F +++ A+A A+ N+ GAR L++++E ++ D+ Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431 Query: 402 F 402 F Sbjct: 432 F 432 >gi|269837421|ref|YP_003319649.1| Sigma 54 interacting domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269786684|gb|ACZ38827.1| Sigma 54 interacting domain protein [Sphaerobacter thermophilus DSM 20745] Length = 419 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 67/108 (62%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+ + +L Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG GKT Sbjct: 66 TPKALYEQLSNYVIGQDRAKKILSVAVYNHYKRITAPNDDDVELQKSNILLLGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115 +++ LA+L PF + T TE GYVG +VE I+ L+ A ++ R Sbjct: 126 LLAQTLAKLLDVPFSIADATALTEAGYVGEDVENILLRLIQAAGDVQR 173 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 63/243 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 177 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEYIQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T +ILFI GAF H + DLL P Sbjct: 237 DTRNILFICGGAFEGLEDIVRRRLGREATLGFGAPLRTERQESVLHHVQQEDLLKYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV V L L + + IL + ++ ++ QY++++K + + L FT+D+++A AD A Sbjct: 297 EFVGRLPVVVALDHLTRDELARILVEPKNAVVKQYQKMLKLDDVELVFTQDALEAAADYA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR-------LHIGDF 426 + + GAR L+T +E VL D+ + L+ + +I+A+ + + +G+ Sbjct: 357 LKRGT-----GARGLRTTIEEVLLDVMYEIPSLEGVRKCIINADVINRRRPPLLMSVGEE 411 Query: 427 PSE 429 P E Sbjct: 412 PVE 414 >gi|149192522|ref|ZP_01870700.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1] gi|148833642|gb|EDL50701.1| ATP-dependent protease ATP-binding subunit [Vibrio shilonii AK1] Length = 417 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +PR+I + LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG G Sbjct: 58 TPRDIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 117 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 118 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 159 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 102/228 (44%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 172 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 231 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 232 DTSKILFICGGAFAGLDKVIDQRVATGTGIGFGAEVRSKDETKTVGELFTQVEPEDLVKY 291 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L EG+ L+F ED++ A+ Sbjct: 292 GLIPEFIGRLPVTTTLTELDEDALIQILNEPKNALTKQYGALFDLEGVELEFREDALRAI 351 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 352 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 392 >gi|121638340|ref|YP_978564.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990834|ref|YP_002645521.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG str. Tokyo 172] gi|166214786|sp|A1KLF3|CLPX_MYCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763856|sp|C1AES4|CLPX_MYCBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|121493988|emb|CAL72465.1| Probable ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773947|dbj|BAH26753.1| ATP-dependent protease ATP-binding subunit [Mycobacterium bovis BCG str. Tokyo 172] Length = 426 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGARKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|114777029|ref|ZP_01452049.1| ATP-dependent protease ATP-binding subunit [Mariprofundus ferrooxydans PV-1] gi|114552550|gb|EAU55010.1| ATP-dependent protease ATP-binding subunit [Mariprofundus ferrooxydans PV-1] Length = 423 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 68/111 (61%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI + LD Y+IGQ+ KR +A+A+ N ++R E+ N+LL+GPTG GKT Sbjct: 68 PAEIKAYLDDYVIGQEGPKRLLAVAVYNHYKRIAHNEKGDVEISKSNVLLLGPTGCGKTL 127 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF+ + T TE GYVG +VE II L+ A V +++R Sbjct: 128 LAQTLAKVFDVPFVMADATTLTEAGYVGEDVENIILKLLQAADYDVDKAQR 178 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 62/228 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DK+ + G I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 179 GIVYIDEVDKLSRKAEGPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILF+ GAF HV P DL+ Sbjct: 239 DTTNILFVLGGAFAGLEKMIESKGKQRSIGFGAKVSSEDEKDIGEILSHV-EPEDLIKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR P L +L+K+ IL + ++ LI QY+ LM+ +G+ L F++D+++A+A Sbjct: 298 LIPELVGRLPAVATLGNLDKAALLRILKEPKNALIKQYQALMQYDGVELSFSDDALEAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 + A+ + GAR L+++ME V+ D+ + D+++ V DA Sbjct: 358 EKALARKT-----GARGLRSIMESVMLDVMYDIPGMPDVEQCVVNADA 400 >gi|52081305|ref|YP_080096.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus licheniformis ATCC 14580] gi|52786684|ref|YP_092513.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus licheniformis ATCC 14580] gi|319647218|ref|ZP_08001440.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp. BT1B_CT2] gi|81384902|sp|Q65GJ4|CLPX_BACLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|52004516|gb|AAU24458.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus licheniformis ATCC 14580] gi|52349186|gb|AAU41820.1| ClpX [Bacillus licheniformis ATCC 14580] gi|317390565|gb|EFV71370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp. BT1B_CT2] Length = 421 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+++A+A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PKEIREILDEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKHEDLEKEALLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L++ ILT ++ L+ QY+++++ + + L F ++++ +A Sbjct: 296 PEFIGRLPIIASLEPLDEKALVEILTKPKNALVKQYRKMLELDDVELVFEDEALTEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ + V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCVITGKTVTDGEPPRLIMKD 409 >gi|284036069|ref|YP_003385999.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74] gi|283815362|gb|ADB37200.1| Sigma 54 interacting domain protein [Spirosoma linguale DSM 74] Length = 410 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 58/233 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EGS V+ + ++ Sbjct: 172 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSVVNVPPQGGRKHPDQRLIAL 231 Query: 292 NTDHILFIASGAF-----HVS-----RPAD-----------------------------L 312 NT++ILFI GAF H++ RP L Sbjct: 232 NTENILFICGGAFDGIERHITKRINTRPIGFSGDRRLNDTFERGHLMRYISALDLKSFGL 291 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV HL+ L++ ILT+ ++ + QY +L + EGI L + +++ + D Sbjct: 292 IPELIGRLPVLTHLEPLDRDALMQILTEPKNAITKQYNKLFQMEGITLHWDPSALNYIVD 351 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 A+ +GAR L+++ E ++ D F S K + + EY R G Sbjct: 352 QALQYG-----LGARGLRSICESIITDAMFEMPSQTGVKELTVSLEYAREKFG 399 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 2/112 (1%) Query: 1 MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILL 58 ++L N P ++ LD+Y+IGQ DAK+++ +A+ N ++R P D + K NI++ Sbjct: 51 VELNINLIKPIDMKRHLDQYVIGQDDAKKSITVAVYNHYKRLMQPKTNDDVTIEKSNIIM 110 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VG TG GKT ++R +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 111 VGETGTGKTYLARSIAKILEVPFCIADATVITEAGYVGEDVETILTRLLQAA 162 >gi|266624422|ref|ZP_06117357.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] gi|288863729|gb|EFC96027.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] Length = 433 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 64/104 (61%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI S LD Y+IGQ AK+ +++A+ N ++R + ++ NIL++GPTG GK Sbjct: 65 MKPKEIKSFLDDYVIGQDSAKKVLSVAVYNHYKRITSRRSMDVDVQKSNILMLGPTGCGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 TYVAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 177 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 236 Query: 291 INTDHILFIASGAFH------VSR----------------------------PADL---- 312 I+T +ILFI GAF SR P DL Sbjct: 237 IDTTNILFICGGAFDGLEKIIESRLSAGSIGFNAEIVDKNRTDIDDLLKKVLPQDLVKFG 296 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L+ L+K ILT+ ++ LI QY++L + + + L+ TE++++ +A Sbjct: 297 LIPEFIGRVPVTVSLELLDKEALVKILTEPKNALIKQYQKLFELDDVKLELTEEAVERIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++AV + GAR L+++ME V+ DI + Sbjct: 357 ELAVERKT-----GARGLRSIMESVMMDIMY 382 >gi|302560652|ref|ZP_07312994.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces griseoflavus Tu4000] gi|302478270|gb|EFL41363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces griseoflavus Tu4000] Length = 428 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKREMESKDQFEEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404 >gi|225374726|ref|ZP_03751947.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM 16841] gi|225213430|gb|EEG95784.1| hypothetical protein ROSEINA2194_00346 [Roseburia inulinivorans DSM 16841] Length = 544 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + +D++D E+ N+L++GPTG G Sbjct: 190 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDVQDGVEIEKSNMLMIGPTGCG 247 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LARL P + T TE GY+G ++E ++ L+ A N V + Sbjct: 248 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 301 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EG+ V G+ +N Sbjct: 301 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 360 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 361 TKNILFICGGAFPDLEDIIKERLNKEASIGFKADLKDKYDNDENLLAKVTTEDVRKFGMI 420 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L++L + IL + ++ +I QY++L+ + + L F ED++ ++A Sbjct: 421 PEFLGRLPVMFTLEALTEDMLVRILKEPKNAIIRQYEKLLAMDEVKLVFDEDALHSIAKE 480 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L++++E + DI + D V I +YV Sbjct: 481 AKE-----KKVGARALRSIIEDFMLDIMYEIPKDDNIGMVTITKDYVE 523 >gi|332072416|gb|EGI82899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA17570] gi|332072739|gb|EGI83220.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA17545] Length = 401 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|300866515|ref|ZP_07111205.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria sp. PCC 6506] gi|300335472|emb|CBN56365.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria sp. PCC 6506] Length = 447 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60 PREI + LD ++IGQ +AK+ +++A+ N ++R P EL NILL+G Sbjct: 84 PREIKNFLDEHVIGQDEAKKVLSVAVYNHYKRLSFVPVKGSTKPPTDEVELQKSNILLIG 143 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LA + PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 144 PTGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 202 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF----------------HVSRPADLL---------------------- 313 +T +ILFI GAF +P DLL Sbjct: 263 DTSNILFICGGAFVGLDKVIEQRTGKKSMGFVQPGDLLPKEKRTADVLKQLEPDDLVKFG 322 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ ++ LN+ ILT+ ++ L+ QY++L+K + + LDF ++I A+A Sbjct: 323 MIPEFIGRIPMLAVVEPLNEETLMAILTEPKNALVKQYQKLLKMDNVQLDFKSEAIRAIA 382 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 383 QEAYRRKT-----GARALRGIVEELMLDVMY 408 >gi|15609594|ref|NP_216973.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis H37Rv] gi|31793638|ref|NP_856131.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium bovis AF2122/97] gi|148662292|ref|YP_001283815.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis H37Ra] gi|148823657|ref|YP_001288411.1| ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis F11] gi|167969782|ref|ZP_02552059.1| ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis H37Ra] gi|215404393|ref|ZP_03416574.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis 02_1987] gi|215412214|ref|ZP_03420976.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis 94_M4241A] gi|215427840|ref|ZP_03425759.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis T92] gi|215431403|ref|ZP_03429322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis EAS054] gi|215446703|ref|ZP_03433455.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis T85] gi|218754189|ref|ZP_03532985.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis GM 1503] gi|219558454|ref|ZP_03537530.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis T17] gi|253798464|ref|YP_003031465.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis KZN 1435] gi|254232591|ref|ZP_04925918.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis C] gi|254365233|ref|ZP_04981279.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis str. Haarlem] gi|254551505|ref|ZP_05141952.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187464|ref|ZP_05764938.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis CPHL_A] gi|260201582|ref|ZP_05769073.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis T46] gi|260205761|ref|ZP_05773252.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis K85] gi|289443983|ref|ZP_06433727.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium tuberculosis T46] gi|289448100|ref|ZP_06437844.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis CPHL_A] gi|289553752|ref|ZP_06442962.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis KZN 605] gi|289570612|ref|ZP_06450839.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T17] gi|289575151|ref|ZP_06455378.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis K85] gi|289746239|ref|ZP_06505617.1| ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis 02_1987] gi|289751063|ref|ZP_06510441.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T92] gi|289754565|ref|ZP_06513943.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis EAS054] gi|289758589|ref|ZP_06517967.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T85] gi|289762626|ref|ZP_06522004.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis GM 1503] gi|294994435|ref|ZP_06800126.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis 210] gi|297635063|ref|ZP_06952843.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis KZN 4207] gi|297732054|ref|ZP_06961172.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis KZN R506] gi|298525935|ref|ZP_07013344.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis 94_M4241A] gi|306776726|ref|ZP_07415063.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu001] gi|306780500|ref|ZP_07418837.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu002] gi|306785252|ref|ZP_07423574.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu003] gi|306789611|ref|ZP_07427933.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu004] gi|306793938|ref|ZP_07432240.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu005] gi|306798332|ref|ZP_07436634.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu006] gi|306804208|ref|ZP_07440876.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu008] gi|306808778|ref|ZP_07445446.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu007] gi|306968610|ref|ZP_07481271.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu009] gi|306972837|ref|ZP_07485498.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu010] gi|307080542|ref|ZP_07489712.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu011] gi|313659390|ref|ZP_07816270.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis KZN V2475] gi|61221150|sp|P0A528|CLPX_MYCTU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|61221151|sp|P0A529|CLPX_MYCBO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214790|sp|A5U5F3|CLPX_MYCTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2791497|emb|CAA16034.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX [Mycobacterium tuberculosis H37Rv] gi|31619231|emb|CAD97345.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX [Mycobacterium bovis AF2122/97] gi|124601650|gb|EAY60660.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis C] gi|134150747|gb|EBA42792.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis str. Haarlem] gi|148506444|gb|ABQ74253.1| ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis H37Ra] gi|148722184|gb|ABR06809.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis F11] gi|253319967|gb|ACT24570.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis KZN 1435] gi|289416902|gb|EFD14142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium tuberculosis T46] gi|289421058|gb|EFD18259.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis CPHL_A] gi|289438384|gb|EFD20877.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis KZN 605] gi|289539582|gb|EFD44160.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis K85] gi|289544366|gb|EFD48014.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T17] gi|289686767|gb|EFD54255.1| ATP-dependent protease ATP-binding subunit [Mycobacterium tuberculosis 02_1987] gi|289691650|gb|EFD59079.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T92] gi|289695152|gb|EFD62581.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis EAS054] gi|289710132|gb|EFD74148.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis GM 1503] gi|289714153|gb|EFD78165.1| ATP-dependent Clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis T85] gi|298495729|gb|EFI31023.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis 94_M4241A] gi|308214887|gb|EFO74286.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu001] gi|308326648|gb|EFP15499.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu002] gi|308330074|gb|EFP18925.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu003] gi|308333914|gb|EFP22765.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu004] gi|308337717|gb|EFP26568.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu005] gi|308341398|gb|EFP30249.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu006] gi|308344884|gb|EFP33735.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu007] gi|308349195|gb|EFP38046.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu008] gi|308353816|gb|EFP42667.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu009] gi|308357765|gb|EFP46616.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu010] gi|308361710|gb|EFP50561.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis SUMu011] gi|326904071|gb|EGE51004.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium tuberculosis W-148] gi|328458232|gb|AEB03655.1| ATP-dependent clp protease ATP-binding subunit clpX [Mycobacterium tuberculosis KZN 4207] Length = 426 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|294054260|ref|YP_003547918.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coraliomargarita akajimensis DSM 45221] gi|293613593|gb|ADE53748.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coraliomargarita akajimensis DSM 45221] Length = 461 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 15/121 (12%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRD- 49 FN P EI + LD +II Q AKRA+A+A+ N ++R +L A+ D Sbjct: 71 FNLVKPGEIKAHLDEHIISQDYAKRALAVAVYNHYKRLRSEERIEAATEFAELDAEFNDV 130 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++ NILL+GPTG GKT ++R LA++ G PF + T TE GYVG +VE I+ L+ Sbjct: 131 QIEKSNILLLGPTGSGKTLLARTLAKILGVPFAIADATTLTEAGYVGEDVENIVLRLLQT 190 Query: 110 A 110 A Sbjct: 191 A 191 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 201 GIIYVDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTVCNVPPQGGRKHPNQEYIQL 260 Query: 292 NTDHILFIASGAF---------------------HVSR--------------PADL---- 312 +T +ILFI GAF H +R P DL Sbjct: 261 DTSNILFICGGAFVGLDKIVQGRMGSKAMGFDTTHNARTNEVPVSELLRETQPEDLVHFG 320 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ L L+ SD IL +T++ LI QY +L +G L FT+D+I A+A Sbjct: 321 MIPEFIGRLPMVAVLDELSVSDLEHILQNTKNALIKQYSKLFMMDGAKLHFTKDAIRAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ L + GAR L+++MER++ D+ + Sbjct: 381 EKAIALKT-----GARALRSIMERIMLDVMY 406 >gi|302143904|emb|CBI23009.3| unnamed protein product [Vitis vinifera] Length = 583 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 19/127 (14%) Query: 3 LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-DLRD----- 49 L NF +P+EI LD+++IGQ+ AK+ +++A+ N ++R Q+ PA D D Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEA 218 Query: 50 ------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 EL NILL+GPTG GKT +++ LAR PF+ + T T+ YVG +VE I+ Sbjct: 219 TDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESIL 278 Query: 104 RDLVDVA 110 L+ VA Sbjct: 279 YKLLMVA 285 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 295 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 354 Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311 +T ILFI GAF P D Sbjct: 355 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESS 414 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +L ++ +LT+ ++ L QYK++ + G+ L FT++ Sbjct: 415 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 474 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++ A++ N+ GAR L++++E +L + + D++ +IDA Sbjct: 475 ALRLISRKAMSKNT-----GARGLRSILENILMNAMYEIPDVRTGNDIIDA 520 >gi|298230526|ref|ZP_06964207.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255218|ref|ZP_06978804.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503307|ref|YP_003725247.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae TCH8431/19A] gi|298238902|gb|ADI70033.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae TCH8431/19A] Length = 410 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 178 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|227519263|ref|ZP_03949312.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX0104] gi|227555530|ref|ZP_03985577.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis HH22] gi|229545496|ref|ZP_04434221.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX1322] gi|229549742|ref|ZP_04438467.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis ATCC 29200] gi|307268264|ref|ZP_07549648.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX4248] gi|307272885|ref|ZP_07554132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0855] gi|307275638|ref|ZP_07556779.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX2134] gi|307280532|ref|ZP_07561581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0860] gi|307287931|ref|ZP_07567964.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0109] gi|307295961|ref|ZP_07575793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0411] gi|312900930|ref|ZP_07760224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0470] gi|312902702|ref|ZP_07761906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0635] gi|312950951|ref|ZP_07769861.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0102] gi|227073275|gb|EEI11238.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX0104] gi|227175335|gb|EEI56307.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis HH22] gi|229305011|gb|EEN71007.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis ATCC 29200] gi|229309412|gb|EEN75399.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis TX1322] gi|306496292|gb|EFM65871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0411] gi|306501076|gb|EFM70383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0109] gi|306504080|gb|EFM73296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0860] gi|306507743|gb|EFM76872.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX2134] gi|306510499|gb|EFM79522.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0855] gi|306515424|gb|EFM83955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX4248] gi|310631100|gb|EFQ14383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0102] gi|310633756|gb|EFQ17039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0635] gi|311292029|gb|EFQ70585.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0470] gi|315025928|gb|EFT37860.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX2137] gi|315028966|gb|EFT40898.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX4000] gi|315033240|gb|EFT45172.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0017] gi|315036725|gb|EFT48657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0027] gi|315143500|gb|EFT87516.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX2141] gi|315147583|gb|EFT91599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX4244] gi|315149321|gb|EFT93337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0012] gi|315152206|gb|EFT96222.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0031] gi|315157011|gb|EFU01028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0043] gi|315159835|gb|EFU03852.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0312] gi|315161527|gb|EFU05544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0645] gi|315163617|gb|EFU07634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX1302] gi|315167354|gb|EFU11371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX1341] gi|315169563|gb|EFU13580.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX1342] gi|315574490|gb|EFU86681.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0309B] gi|315576777|gb|EFU88968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0630] gi|315581848|gb|EFU94039.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TX0309A] Length = 468 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 115 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 174 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 175 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 220 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 73/361 (20%) Query: 102 IIRDLVDVAINIVRESRRDE-VREQASINAEERILDAL----VGKTATSNTREV----FR 152 I + +D+ I+ E DE VRE + + IL+ L +G+ T V Sbjct: 85 ICNECIDLCKEIIDEEFYDEAVRELTDVPKPQEILNVLNEYVIGQERAKRTLSVAVYNHY 144 Query: 153 KKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV 212 K++ E + + D+E+ SN + G G L++ +K + S+ Sbjct: 145 KRVNQSETAATQDDVELQK-----SNICLIGPTGSGKTFLAQTLAKTLNVPFAIADATSL 199 Query: 213 QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREG 270 + + D + L+ + +++ E GI+++DE DKI + I VS EG Sbjct: 200 TEA-GYVGEDVENILLKLLQSADYNVERAEK-GIIYIDEIDKIARKSENVSITRDVSGEG 257 Query: 271 VQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF--------------- 304 VQ+ LL ++EG+ S ++ I+T ++LFI GAF Sbjct: 258 VQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFDGIETIVKNRLGEKT 317 Query: 305 ------------------HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDT 341 H+ P DLL PE GR PV L L D ILT+ Sbjct: 318 IGFGKTNSALNEEESIMQHII-PEDLLKFGLIPEFIGRLPVMAALDKLTNDDLVRILTEP 376 Query: 342 ESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDIS 401 ++ L+ QY++L+ + L+F +++ A+A A+ N+ GAR L++++E ++ D+ Sbjct: 377 KNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNT-----GARGLRSIIEEIMMDVM 431 Query: 402 F 402 F Sbjct: 432 F 432 >gi|320106218|ref|YP_004181808.1| Sigma 54 interacting domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924739|gb|ADV81814.1| Sigma 54 interacting domain protein [Terriglobus saanensis SP1PR4] Length = 429 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ+ K+ +A+A+ N ++R Q+ + EL NILLVGPTG GK Sbjct: 70 PHEVKAFLDEYVIGQEMTKKKLAVAVYNHYKRIQMNRTRGNDVELAKSNILLVGPTGSGK 129 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA++ PF V+ T TE GYVG +VE II L+ A Sbjct: 130 TLLAHTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 173 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 66/237 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 183 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTVV 242 Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309 +T +ILFI GAF + P Sbjct: 243 DTTNILFICGGAFVGLEKVIARRIGKKALGFKTQGDPDVIEGATPIRAQRDSELLRQAEP 302 Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DLL PE GR PV L L+++ ILT + ++ QY +L + EG+ + F+ Sbjct: 303 QDLLKYGLIPEFVGRLPVLGILDELDEAALIDILTRPRNAILKQYAKLFEFEGVKVTFSS 362 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 ++ A+A A+N +GAR L+ ++E ++ D+ ++ ++ + K + I AE V+ Sbjct: 363 EAAQAIAHEALNRK-----VGARGLRMILEELMLDLMYTVPTNKKLKELEITAEMVK 414 >gi|322375632|ref|ZP_08050144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C300] gi|321279340|gb|EFX56381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. C300] Length = 410 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREETEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDEKSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F +D++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDDALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L++++E + D+ F + KTV I E V Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399 >gi|256823169|ref|YP_003147132.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella koreensis DSM 16069] gi|256796708|gb|ACV27364.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kangiella koreensis DSM 16069] Length = 422 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 4/115 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPA--DLRD-ELMPKNILLVGPTGV 64 P+EI L++Y+IGQ AK+ +++A+ N ++R + PA + +D EL NILL+GPTG Sbjct: 65 PQEIAEFLEQYVIGQDRAKKVLSVAVYNHYKRLESEPASSEHKDVELGKSNILLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAETLARMLEVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILF+ GAF P DL Sbjct: 240 DTGNILFVCGGAFAGLEKIIQERTEKGGIGFGADVKQVKEGRAIGEMLKAVEPDDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ L+ L++ IL + ++ L QY +L E + L+F +D++ A+A Sbjct: 300 LIPEFIGRLPIVTTLQELDEEALVRILIEPKNALTKQYSKLFSLENVDLEFRKDALVAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L++++E +L D ++ L+ V IDA V+ Sbjct: 360 HKAMQRRT-----GARGLRSILEEILLDTMYNLPSLEGVSKVCIDAAVVK 404 >gi|78357262|ref|YP_388711.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552156|sp|Q30Z80|CLPX_DESDG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78219667|gb|ABB39016.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 417 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64 SP EI + LD Y+IGQ AK+ +++A+ N ++R L DE L NILLVG +G Sbjct: 62 LSPAEIKARLDEYVIGQHTAKKILSVAVHNHYKRVFFAETLSDEVELEKSNILLVGSSGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 GKTLLAKTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 57/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GIV++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 177 GIVYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 236 Query: 292 NTDHILFIASGAF-----------HVS-----------------------RPADL----- 312 +T +ILFI GAF H P DL Sbjct: 237 DTSNILFIMGGAFIGLDKIIEQRMHGGAMGFGVKVASKKETPLSDLLGNVHPNDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV H+ L + D IL + ++ L+ QY++L + + + L FT +++ A+A Sbjct: 297 IPEFIGRIPVITHVNELAEDDLVRILQEPKNALVRQYQKLFELDHVKLRFTSNALRAVAR 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 A+ + GAR L+ V+E V+ +I F+ Sbjct: 357 QAIERKT-----GARGLRNVLESVMLEIMFN 382 >gi|258544427|ref|ZP_05704661.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cardiobacterium hominis ATCC 15826] gi|258520316|gb|EEV89175.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cardiobacterium hominis ATCC 15826] Length = 415 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD YIIGQ AK+A+A+A+ N ++R Q AD E++ NIL++G TG Sbjct: 62 TPSEIKAFLDDYIIGQHRAKKALAVAVYNHYKRLHLNQQKADDGVEIVKSNILMIGSTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ PF + T TE GYVG +VE I++ L+ N V + R Sbjct: 122 GKTLLAQTLAKCLDVPFAIADATALTEAGYVGEDVETIVQKLLMNCDNDVTRAER 176 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 59/216 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL LVEG+ +V + G + Sbjct: 177 GIIYIDEIDKIARKGENLSITRDVSGEGVQQALLKLVEGTVAAVPPQGGRKHPQQELIHV 236 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 NT +ILFI GAF HV A+ Sbjct: 237 NTTNILFICGGAFAGLEKLIAKRTEQGGIGFGAHVHSKAEADENNNRLLQQIEPEDLVKF 296 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L +L++ ILT+ ++ ++ Q++++ E + L+FT D++ A+ Sbjct: 297 GLIPEFVGRLPIIALLDTLDEDALIHILTEPKNAIVRQFEKIFGFENVALEFTPDALQAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 A A+ + GAR L++++E+ L D F+ D Sbjct: 357 AQKAITRKT-----GARGLRSIVEQTLLDTMFNLPD 387 >gi|111221350|ref|YP_712144.1| ATP-dependent protease ATP-binding subunit ClpX [Frankia alni ACN14a] gi|123338856|sp|Q0RPH1|CLPX_FRAAA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|111148882|emb|CAJ60561.1| ATPase, chaperone subunit of serine protease [Frankia alni ACN14a] Length = 432 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------ELMPKNILL 58 PREI LD Y++GQ+ AK+ +++A+ N ++R Q EL NILL Sbjct: 64 PREIYEFLDSYVVGQETAKKTLSVAVYNHYKRVQAGGSGGGGGAEGAKAEVELAKSNILL 123 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LGPTGCGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T ++LFI GAF SR P DLL Sbjct: 245 DTTNVLFIVGGAFAGLDRIIESRIGKKSLGFRAVLHGKDDPDASDVFGDIMPEDLLKYGM 304 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ ILT+ ++ L+ QYK L + + + LDFT D+++A+AD Sbjct: 305 IPEFIGRLPVITSVSNLDREALIRILTEPKNALVRQYKRLFELDSVDLDFTSDALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VV+ E V H+ Sbjct: 365 QAI-LRGT----GARGLRAIMEEVLLSVMYDIPSRKDVARVVVTREVVLEHV 411 >gi|227542943|ref|ZP_03972992.1| ATP-dependent protease ATP-binding subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227181165|gb|EEI62137.1| ATP-dependent protease ATP-binding subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 418 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 4/107 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63 +P+EI LD Y+IGQ +AK+ +++A+ N ++R +L +D EL NILL+GPTG Sbjct: 65 TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAA 171 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 57/228 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G Sbjct: 180 HGIVYIDEIDKITRKGENVSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQELIQ 239 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 ++T +ILFIASGAF +P DL Sbjct: 240 VDTSNILFIASGAFAGLEKVIQERVGKKSLGFGADIRSNEELENANILQKVQPEDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV + L+K +LT+ +++L+ QY+++ + L FT+ ++ A+A Sbjct: 300 LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFTDGALGAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + A+ + GAR L+ +ME +L + + + V IDA V Sbjct: 360 EKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVV 402 >gi|227488330|ref|ZP_03918646.1| ATP-dependent protease ATP-binding subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227091692|gb|EEI27004.1| ATP-dependent protease ATP-binding subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 418 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 4/107 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPKNILLVGPTG 63 +P+EI LD Y+IGQ +AK+ +++A+ N ++R +L +D EL NILL+GPTG Sbjct: 65 TPKEIKEFLDEYVIGQDEAKKVLSVAVYNHYKRVKLQNVFGSDDGVELQKSNILLLGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 CGKTYLAQTLAKKLDVPFTIADATSLTEAGYVGEDVENILLRLLQAA 171 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 57/228 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GIV++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G Sbjct: 180 HGIVYIDEIDKITRKGENVSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQELIQ 239 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 ++T +ILFIASGAF +P DL Sbjct: 240 VDTSNILFIASGAFAGLEKVIQERVGKKSLGFGADIRSNEELENANILQKVQPEDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV + L+K +LT+ +++L+ QY+++ + L FT+ ++ A+A Sbjct: 300 LIPEFIGRLPVTATVNQLDKKALVSVLTEPKNSLVKQYQKMFSYDDTELVFTDGALGAIA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + A+ + GAR L+ +ME +L + + + V IDA V Sbjct: 360 EKALARKT-----GARGLRAIMEEILVPVMYDIPSREVSKVTIDAGVV 402 >gi|183983779|ref|YP_001852070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium marinum M] gi|238690940|sp|B2HNG2|CLPX_MYCMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|183177105|gb|ACC42215.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium marinum M] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRCEAVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|163857102|ref|YP_001631400.1| ATP-dependent protease ATP-binding subunit ClpX [Bordetella petrii DSM 12804] gi|229889853|sp|A9IR50|CLPX_BORPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|163260830|emb|CAP43132.1| ATP-dependent Clp protease ATP-binding subunit [Bordetella petrii] Length = 432 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI + LD+Y+IGQ KR +A+A+ N ++R ++ D EL NI+L+GPTG Sbjct: 66 TPSEIKTFLDQYVIGQTLPKRMLAVAVYNHYKRIRHGEIKGD-EVELSKSNIMLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF+ + T TE GYVG +VE II+ L+ V +++R Sbjct: 125 GKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 179 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 159/376 (42%), Gaps = 102/376 (27%) Query: 102 IIRDLVDVAINIVRE----SRRDEVREQASINAE-ERILDA-LVGKTATSNTREV----F 151 I + +D+ +I+RE + R +R + +E + LD ++G+T V Sbjct: 36 ICDECIDLCNDIIREEAQATARAAIRSELPTPSEIKTFLDQYVIGQTLPKRMLAVAVYNH 95 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K++R GEI E+++ SN + G G L++ ++++ Sbjct: 96 YKRIRHGEIKGDEVELSK-------SNIMLIGPTGSGKTLLAQTLARMLN---------- 138 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVE------NY-------GIVFLDEFDKIVAR 258 P +M D + L + V D +++ NY I+++DE DKI + Sbjct: 139 ----VPFVMADATT-LTEAGYVGEDVENIIQKLLQNCNYEVEKAQRAIIYIDEIDKISRK 193 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAF- 304 I VS EGVQ+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 194 SDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFD 253 Query: 305 ---HVSR------------------------------PADLL-----PEIQGRFPVRVHL 326 V R P DL+ PE+ GR PV L Sbjct: 254 GLEKVIRDRTEKSGIGFSASVRAKSERGVGELFSEVEPEDLIKFGLIPELVGRLPVVATL 313 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+++ ILT+ +++LI Q+++L EG LD ++ A+A A+ + GA Sbjct: 314 DELDEAALVQILTEPKNSLIKQFQKLFAMEGAELDVRPGALKAIARKALKRKT-----GA 368 Query: 387 RRLQTVMERVLEDISF 402 R L++++E L D + Sbjct: 369 RGLRSIIEAALLDTMY 384 >gi|327389757|gb|EGE88102.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA04375] Length = 401 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 169 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|322391568|ref|ZP_08065037.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus peroris ATCC 700780] gi|321145651|gb|EFX41043.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus peroris ATCC 700780] Length = 410 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L++++E + D+ F + KTV I E V Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399 >gi|54023302|ref|YP_117544.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardia farcinica IFM 10152] gi|61211421|sp|Q5Z061|CLPX_NOCFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54014810|dbj|BAD56180.1| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM 10152] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDSRGETVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIISDRTGHRGIGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTQDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385 >gi|55820660|ref|YP_139102.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus LMG 18311] gi|55822551|ref|YP_140992.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus CNRZ1066] gi|81820326|sp|Q5M0S4|CLPX_STRT1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|81820490|sp|Q5M5B0|CLPX_STRT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|55736645|gb|AAV60287.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus LMG 18311] gi|55738536|gb|AAV62177.1| ATP-dependent Clp protease subunit X [Streptococcus thermophilus CNRZ1066] gi|312277987|gb|ADQ62644.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus thermophilus ND03] Length = 408 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+E++ L+ Y++GQ KRA+A+A+ N ++R D +L NIL++GPTG G Sbjct: 63 PKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 KTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D+++A+A A Sbjct: 297 EFIGRLPVLATLEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F L++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKV 390 >gi|262276277|ref|ZP_06054086.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia hollisae CIP 101886] gi|262220085|gb|EEY71401.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Grimontia hollisae CIP 101886] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+EI + LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG G Sbjct: 67 TPQEIRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNGDTTADGVELGKSNILLIGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 127 KTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF---------HVSR---------------------------PADL--- 312 +T ILFI GAF V++ P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVDQRVAKGSGIGFGAEVRSKDQEASLSDLFSKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L++ +G+ L+F +D++ A+ Sbjct: 301 GLIPEFIGRLPVTAILGELDEDALVQILREPKNALTKQYAALLELDGVELEFRDDALTAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A A+ + GAR L++++E VL D + + T VVID ++ Sbjct: 361 AKKAMERKT-----GARGLRSIVEAVLLDTMYDLPSSKGVTKVVIDESVIK 406 >gi|194333458|ref|YP_002015318.1| ATP-dependent protease ATP-binding subunit ClpX [Prosthecochloris aestuarii DSM 271] gi|238693326|sp|B4S620|CLPX_PROA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|194311276|gb|ACF45671.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prosthecochloris aestuarii DSM 271] Length = 439 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 6/118 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGP 61 SP+ I+ L +Y++GQ+ A++++A+A+ N +RR Q+ D D+++ NILL+GP Sbjct: 80 ISPKNIMESLGQYVVGQERARKSLAVAVYNHYRRIESQEWVRDAEDDVVIEKSNILLIGP 139 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 TG GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ + N+ R R Sbjct: 140 TGTGKTLLAQTLANLLDVPFTIVDATSLTEAGYVGDDVETILTRLLQASDFNLERAER 197 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V + Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLI 255 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 ++NT +ILFI GAF V++ + Sbjct: 256 NVNTRNILFICGGAFEGLSKLIGRRVAKASMGFGSKVKAQQAEADPEILQKVTQDDLHEY 315 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+ R IL + ++ L+ QY++L + +G L F ED++D + Sbjct: 316 GLIPEFIGRLPVISTLDPLDAKALRNILVEPKNALVKQYQKLFEMDGCELVFDEDALDKV 375 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A++ + GAR L++V+E ++ DI F Sbjct: 376 VEIALDRGT-----GARALRSVLENIMIDIMF 402 >gi|312140359|ref|YP_004007695.1| clp peptidase ATP-binding subunit clpx [Rhodococcus equi 103S] gi|325676031|ref|ZP_08155714.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi ATCC 33707] gi|311889698|emb|CBH49015.1| Clp peptidase ATP-binding subunit ClpX [Rhodococcus equi 103S] gi|325553269|gb|EGD22948.1| ATP-dependent Clp protease ATP-binding subunit [Rhodococcus equi ATCC 33707] Length = 425 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLENYVIGQDSAKRTLAVAVYNHYKRIQAGDRGRDARGETVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L +G+ L+F+ D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKDSLVTILSEPKNALVKQYTRLFDMDGVELEFSADALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A++ + GAR L+ +ME VL + + S D+ + VV+ AE V Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVVTAETV 403 >gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus nasoniae] Length = 428 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 17/123 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI LD Y+IGQ++AK+ +A+A+ N ++R LR+ EL NI Sbjct: 66 TPHEIRHHLDDYVIGQENAKKVLAVAVYNHYKR------LRNVSNEGVNGEGVELGKSNI 119 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 LL+GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V + Sbjct: 120 LLIGPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEK 179 Query: 117 SRR 119 ++R Sbjct: 180 AQR 182 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 183 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 243 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFSAEVKSESERATEGELLSQVEPEDLIKF 302 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L + EG+ L+F E+++ A+ Sbjct: 303 GLIPEFIGRLPVVATLGELSEEALIQILKEPKNALTKQYQALFELEGVNLEFREEALKAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A++ + GAR L++++E L + + ++ + +VID Sbjct: 363 AKKAMSRKT-----GARGLRSIVEGALLETMYDLPSMEHVEKIVID 403 >gi|239931289|ref|ZP_04688242.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces ghanaensis ATCC 14672] gi|291439662|ref|ZP_06579052.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis ATCC 14672] gi|291342557|gb|EFE69513.1| ATP-dependent protease ATP-binding subunit [Streptomyces ghanaensis ATCC 14672] Length = 428 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKRELESKDQFEEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ V Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVV 404 >gi|163786487|ref|ZP_02180935.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales bacterium ALC-1] gi|159878347|gb|EDP72403.1| ATP-dependent protease ATP-binding subunit [Flavobacteriales bacterium ALC-1] Length = 410 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTVVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAFH-VSR--------------------------------PADL-----L 313 NT+HILFIA GAF + R P DL + Sbjct: 234 NTEHILFIAGGAFDGIERVITKRLNMQAIGYSSINSDDAIDNDNILQYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV H+ L+ + R ILT+ ++ +I QYK+L + + TE +++ + + Sbjct: 294 PEIIGRLPVLTHMDPLDANTLRAILTEPKNAIIKQYKKLFAMDEVDFTITEGALNYVVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+++ E +L + F Sbjct: 354 AIEYK-----LGARGLRSLCEEILTEAMF 377 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P+EI + LD YIIGQ+ KR +++A+ N ++R Q P+D E+ NI++VG TG GKT Sbjct: 62 PKEIKAFLDEYIIGQEYTKRVMSVAVYNHYKRLLQPPSDDDIEIQKSNIIMVGQTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 122 LMAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 164 >gi|240170928|ref|ZP_04749587.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium kansasii ATCC 12478] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSRDSRHEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|256375295|ref|YP_003098955.1| ATP-dependent protease ATP-binding subunit ClpX [Actinosynnema mirum DSM 43827] gi|255919598|gb|ACU35109.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinosynnema mirum DSM 43827] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI LD+Y+IGQ +AKR +++A+ N ++R Q R+ EL NIL++GPT Sbjct: 64 PAEIHDFLDQYVIGQSEAKRTLSVAVYNHYKRIQAGDRGREGRDDGVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T ++LFI +GAF S P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIQDRIGKRGLGFGAEVRTKAEVDAADYFAESMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ + +L++ ILT+ ++ L+ QY++L + +G+ L+FT+ +++A+AD Sbjct: 301 IPEFIGRLPMVASVTNLDQPSLVRILTEPKNALVKQYQKLFEMDGVELEFTKSALEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385 >gi|91793846|ref|YP_563497.1| ATP-dependent protease ATP-binding subunit [Shewanella denitrificans OS217] gi|123060778|sp|Q12LA2|CLPX_SHEDO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|91715848|gb|ABE55774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella denitrificans OS217] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 13/119 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 67 TPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKR------LRNGTTKEGVELGKSNILLIG 120 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++S IL+ ++ L QY L + E + L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AKKAMSRKT-----GARGLRSIVEGILLDTMY 386 >gi|325577259|ref|ZP_08147743.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160841|gb|EGC72962.1| ATP-dependent Clp protease ATP-binding subunit [Haemophilus parainfluenzae ATCC 33392] Length = 412 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 63 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 163 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 176 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKV 235 Query: 292 NTDHILFIASGAF------------------------------HVSR------PADLL-- 313 +T ILFI GAF ++S P DL+ Sbjct: 236 DTSKILFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEEKENLSELFRQVEPDDLMKF 295 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L++ ILT ++ L QY+ L E + L+FT +++ A+ Sbjct: 296 GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAM 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ + GAR L++++E VL D + ++ K V++D E + Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLKKVIVDEETI 400 >gi|254514392|ref|ZP_05126453.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium NOR5-3] gi|219676635|gb|EED33000.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma proteobacterium NOR5-3] Length = 428 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD Y+IGQQ AK+ +++A+ N ++R + EL NILLVGPTG GK Sbjct: 69 PEEINGILDEYVIGQQRAKKVLSVAVYNHYKRLRHGGSKSGDVELGKSNILLVGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 169 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAF----------------------HVS-------------RPADL---- 312 +T ILFI GAF H P DL Sbjct: 242 DTSSILFICGGAFAGLDKVIRDRSEKGGIGFGAEVHSKDAKRNVGEVLFDLEPEDLVQYG 301 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+ ILT+ ++L QY +L + EG+ +DF ED + A+A Sbjct: 302 LIPEFVGRLPVIATLEELDVPALVQILTEPRNSLTKQYSKLFEMEGVEIDFREDGLRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ + GAR L++++E VL D +S + VV+D +R Sbjct: 362 EKAMERKT-----GARGLRSILEGVLLDTMYSIPSRDDVAKVVVDESVIR 406 >gi|154148896|ref|YP_001406902.1| ATP-dependent protease ATP-binding subunit [Campylobacter hominis ATCC BAA-381] gi|153804905|gb|ABS51912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter hominis ATCC BAA-381] Length = 411 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 2/116 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTG 63 + +P+E++ L+RY+IGQ+ AK+A ++ + N ++R +Q D EL NILL+GPTG Sbjct: 58 SITPQELMEVLNRYVIGQERAKKAFSVGVYNHYKRIFKQNEIDDDTELSKSNILLIGPTG 117 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+++ + Sbjct: 118 SGKTLMAQTLAKFLEVPIAICDATSLTEAGYVGEDVENILTRLLQAAGGDVKKAEK 173 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 174 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 233 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILF+ GAF H+ P DL +P Sbjct: 234 DTTNILFVCGGAFDGLNEIINRRMGENILGFGQEKRSKKESQNLLHLVEPDDLVHFGIIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L +++ ILT+ ++ ++ QY++L +G L F +D+I +A A Sbjct: 294 ELIGRLHVVATLNEIDEDAMIRILTEPKNAILKQYQKLFAIDGANLKFEDDAIAQVAKKA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME ++ DI F +L V+I + V Sbjct: 354 IERKT-----GARGLRSIMEDIMVDIMFDLPELAGYDVIITKDVV 393 >gi|297622837|ref|YP_003704271.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera radiovictrix DSM 17093] gi|297164017|gb|ADI13728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Truepera radiovictrix DSM 17093] Length = 398 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PRE+ ++LD Y++ Q+ AK+ +A+A+ N + R Q P EL NILL+GP+G GKT Sbjct: 56 TPREVKAQLDAYVVEQEAAKKTLAVAVFNHYLRLQHP---DSELQKANILLLGPSGTGKT 112 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 113 LLAQTLARILQVPFAIADATTLTEAGYVGDDVENILVRLLQTA 155 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 53/206 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG + V + G +I Sbjct: 165 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGAVTYVPPQGGRKHPHQELVAI 224 Query: 292 NTDHILFIASGAFH-----------VSR-------------------PAD-----LLPEI 316 +T +ILFI GAF VS+ P D L+PE+ Sbjct: 225 DTTNILFICGGAFEGLEDIIRNRVDVSKVGFNYDGEGDRGAVTAQVIPEDLVRFGLIPEL 284 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L+ L+ +LT ++ L+ QY+EL + EG+ L F+E ++ +A A Sbjct: 285 IGRLAVTATLEELSLEALVDVLTQPKNALVKQYRELFRLEGVELTFSEGALYEVARRAKA 344 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402 L + GAR L++V+E+ L ++ F Sbjct: 345 LGT-----GARGLRSVLEKTLLELMF 365 >gi|294812616|ref|ZP_06771259.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces clavuligerus ATCC 27064] gi|294325215|gb|EFG06858.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces clavuligerus ATCC 27064] Length = 464 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 101 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGETGGAQGREDAIELAKSNILLLGP 160 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 161 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 209 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 219 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 278 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 279 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 338 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 339 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 398 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI A+ VR ++ Sbjct: 399 QAI-LRGT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITADVVRNNV 445 >gi|206895573|ref|YP_002247154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coprothermobacter proteolyticus DSM 5265] gi|206738190|gb|ACI17268.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coprothermobacter proteolyticus DSM 5265] Length = 417 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPAD-LRDELMPKNILLVGPTGV 64 +P++I S LD Y++GQ+ AKR V++A+ N ++R +L D EL NIL +GPTG Sbjct: 60 TPQQIKSFLDNYVVGQEKAKRIVSVAVYNHYKRVRSKLRGDSFGTELGKSNILFIGPTGT 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 GKTYVAQNLAKFLNVPFSISDATSLTEAGYVGEDVENILLRLIQAA 165 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 55/240 (22%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGIV++DE DKI + I VS EGVQ+ LL +VEG+ + ++ Sbjct: 173 QYGIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFV 232 Query: 290 SINTDHILFIASGAFH-------------------------------VSRPADLL----- 313 I+T ILF+ GAF + P DLL Sbjct: 233 QIDTSDILFMVGGAFEGLEDIIRQRLGKRTVGFMADPKALDSDEVLDMVIPEDLLKFGMI 292 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GRFPV L+ D ILT +++L+ QYK L +G+ L+FT+ +++A+A Sbjct: 293 PEFVGRFPVVATFHKLSTKDLVDILTRPKNSLVKQYKALFAMDGVELEFTDKALEAIAQE 352 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPSETDM 432 A +GAR L+ ++E L D+ F + E K V+I ++ ++ F +E D+ Sbjct: 353 AEKRG-----MGARGLRAILEETLMDLMFEVPEKPEIKKVIITSKCIQGEEPVFLTELDL 407 >gi|301154976|emb|CBW14439.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Haemophilus parainfluenzae T3T1] Length = 412 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 63 TPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T +++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 123 TLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLL 163 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 176 GIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKV 235 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------- 311 +T ILFI GAF V + D Sbjct: 236 DTSKILFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEDKENLSELFRQVEPDDLMKF 295 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L++ ILT ++ L QY+ L E + L+FT +++ A+ Sbjct: 296 GLIPEFIGRLPMIAPLSELDEEALIQILTQPKNALTKQYQALFGLEDVELEFTPEALKAM 355 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A A+ + GAR L++++E VL D + ++ + V++D E + Sbjct: 356 AKKALERKT-----GARGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETI 400 >gi|315604694|ref|ZP_07879757.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315313706|gb|EFU61760.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 419 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65 PREI L+ ++IGQ AKRA+++A+ N ++R + + D L K NILL+GPTG G Sbjct: 65 PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSRDAGNAEDMLGTKSNILLLGPTGTG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LARL PF V+ T TE GYVG +VE I+ L+ A ++++ + Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF S DL +P Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSASEMGDLYEAVSAEDLHKFGMIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ K L + D +LT+ ++L+ QY+ L +GI L+FT +++ A+A A Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFDLDGIDLEFTHEALLAIAARA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 N T GAR L ++ME L D+ F Sbjct: 359 -NERKT----GARGLSSIMEATLSDLMF 381 >gi|332830358|gb|EGK02986.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas gadei ATCC BAA-286] Length = 411 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 56/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKMIAV 234 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 +T +ILFI GAF V R P DL + Sbjct: 235 DTKNILFICGGAFDGIERKIAQRLNTKVVGYASSLKNAEVDRENLLQYVAPQDLKSYGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L +L++S R ILT+ ++++I QY +L + + L F ED + + D Sbjct: 295 PEIIGRLPILTYLDALDRSALRRILTEPKNSIIKQYIKLFNMDDVDLTFDEDVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 AV +GAR L++++E ++ D F+ ++ + I +Y Sbjct: 355 AVEYK-----LGARGLRSIVENIMMDAMFTIPSTKQTQLHITKDY 394 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 4/104 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P++I LD YIIGQ +AKR +A+A+ N ++R Q+ D+ E+ NI+LVGPTG GK Sbjct: 64 PKKIKEYLDGYIIGQDNAKRYLAVAVYNHYKRILQEKNDDI--EIEKSNIILVGPTGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A++ PF V+ T TE GYVG ++E I+ L+ + Sbjct: 122 TLLARTIAKMLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAS 165 >gi|323484459|ref|ZP_08089825.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum WAL-14163] gi|323692475|ref|ZP_08106709.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium symbiosum WAL-14673] gi|323402237|gb|EGA94569.1| hypothetical protein HMPREF9474_01576 [Clostridium symbiosum WAL-14163] gi|323503472|gb|EGB19300.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium symbiosum WAL-14673] Length = 433 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 63/104 (60%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y++GQ +AK+ +++A+ N ++R EL NIL++GPTG GK Sbjct: 65 LKPKEIKEFLDEYVVGQDEAKKVLSVAVYNHYKRITSKGTQEVELQKSNILMLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 125 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKIIQSA 168 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 177 YGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 236 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF P DL Sbjct: 237 IDTTNILFICGGAFDGLEKIIENRLGAGSIGFNAEIVDKQNQDIDELLKQVMPQDLTKFG 296 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V L+SL++ IL++ ++ +I QY+ +G+ L+FTE+++ A+A Sbjct: 297 LIPEFIGRVPVTVALRSLSEDALVKILSEPKNAIIKQYQAFFDLDGVKLEFTEEALTAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV + GAR L+++ME ++ DI + Sbjct: 357 HLAVERKT-----GARGLRSIMESIMMDIMY 382 >gi|224437060|ref|ZP_03658041.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter cinaedi CCUG 18818] Length = 427 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 6/118 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD-ELMPKNILLVGP 61 SP+E+ + LD Y+IGQ AK+ ++A+ N ++R +Q+ LR+ EL NILL+GP Sbjct: 71 SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 130 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+++ + Sbjct: 131 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEK 188 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 189 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 248 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314 +T ILF+ GAF H + P DL+ P Sbjct: 249 DTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDDLISYGLIP 308 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L + K ILT ++ L+ QY+++ + +G L F + +I+A+A++A Sbjct: 309 ELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGAIEAIAELA 368 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ + GAR L+ +ME + D+ + +L+ + I E + Sbjct: 369 ISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECI 408 >gi|153955959|ref|YP_001396724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium kluyveri DSM 555] gi|189082490|sp|A5N2K7|CLPX_CLOK5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146348817|gb|EDK35353.1| ClpX [Clostridium kluyveri DSM 555] Length = 430 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 57/223 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 175 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 Query: 291 INTDHILFIASGAF-----------HVSR-----------------------PADLL--- 313 INT +ILFI GAF VS P DLL Sbjct: 235 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMPGDLLKFG 294 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L++L+++ IL + ++ L+ QYK+L + + + L+F +++++A+A Sbjct: 295 LIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 D A+ N+ GAR L+ ++E ++D+ F +E VI Sbjct: 355 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVI 392 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+D+K+++++A+ N ++R ++ EL NILL+GPTG GK Sbjct: 63 PVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166 >gi|291165525|gb|EFE27575.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Filifactor alocis ATCC 35896] Length = 424 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61 P EI + LD Y+IGQ++AK+ +A+A+ N ++R P + ++ EL N++++GP Sbjct: 61 LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAA 169 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVSTK-----------YGS 290 GI+++DE DKI AR + N VS EGVQ+ LL ++E + + + Sbjct: 179 GIIYIDEIDKI-ARKTDNPSLTRDVSGEGVQQALLKILESTKANVPPQGGRKHPHQDFLQ 237 Query: 291 INTDHILFIASGAF---------------------HVSRPAD------------------ 311 I+T +ILFI GAF + + D Sbjct: 238 IDTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSNISFYEKVESQDLLKYG 297 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE R PV V L++L++ ILT+ ++ L+ QYK+L + +G+ L+ ED++ A+A Sbjct: 298 LIPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFELDGVELEVEEDALIAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ IGAR L++++E ++ DI + Sbjct: 358 KQAIDRK-----IGARGLRSILENIMIDIMY 383 >gi|219856301|ref|YP_002473423.1| hypothetical protein CKR_2958 [Clostridium kluyveri NBRC 12016] gi|254763842|sp|B9E684|CLPX_CLOK1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219570025|dbj|BAH08009.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 432 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 57/223 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 177 HGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 236 Query: 291 INTDHILFIASGAF-----------HVSR-----------------------PADLL--- 313 INT +ILFI GAF VS P DLL Sbjct: 237 INTTNILFICGGAFDGIDSIIERRTRVSTLGFGAEIQSKKDKDIGKLLKQIMPGDLLKFG 296 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ V L++L+++ IL + ++ L+ QYK+L + + + L+F +++++A+A Sbjct: 297 LIPEFVGRIPIIVTLEALDRAALISILKEPKNALVKQYKKLFELDDVELEFKDEALEAIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 D A+ N+ GAR L+ ++E ++D+ F +E VI Sbjct: 357 DEALKRNT-----GARGLRAIIEETMKDVMFDIPSKEEIAKVI 394 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+D+K+++++A+ N ++R ++ EL NILL+GPTG GK Sbjct: 65 PVEIKNYLDQYVIGQEDSKKSLSVAVYNHYKRINSNNNSNDDVELQKSNILLLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 125 TLLAQTLARFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 168 >gi|292670225|ref|ZP_06603651.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia ATCC 43541] gi|292648177|gb|EFF66149.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia ATCC 43541] Length = 421 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ +AK+++++A+ N ++R + + EL NIL++GPTG GK Sbjct: 64 PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRINAGQNKNEDVELRKSNILMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQI 236 Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313 +T +ILFI GAF +S+ P DL+ Sbjct: 237 DTTNILFICGGAFDGIEEIIESRLGKKQMGFGAQVRSKKRVTVGALLSKVIPEDLMKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL++ ILT+ ++ L+ Q+++L++ +G+ L F +D++ +A Sbjct: 297 IPEFIGRLPVVVTLNSLDEKALVRILTEPKNALVKQFQKLLELDGVRLTFEDDALRLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 A+ + GAR L++++E ++ ++ + +Q T Sbjct: 357 EALTHKT-----GARGLRSIIEGIMRNVMYEVPSIQGVTAC 392 >gi|238926239|ref|ZP_04657999.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] gi|238885919|gb|EEQ49557.1| ATP dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] Length = 421 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ +AK+++++A+ N ++R + EL N+L++GPTG GK Sbjct: 64 PKEIRHILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPQQELLQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T +ILFI G+F +S+ P DL+ Sbjct: 237 DTTNILFICGGSFDGLEEIIESRLGKKQMGFGAEVRSRRRVKIGASLSKIIPEDLMKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL++ ILT+ ++ LI Q+++L++ +G+ L F ++++ +A Sbjct: 297 IPEFIGRLPVVVTLNSLDEDALVRILTEPKNALIKQFQKLLELDGVRLTFEDEALHLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 A+ + GAR L++++E ++ ++ + + T Sbjct: 357 EALTHKT-----GARGLRSIVENIMRNVMYEVPSIHGVTAC 392 >gi|221633184|ref|YP_002522409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermomicrobium roseum DSM 5159] gi|221156856|gb|ACM05983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermomicrobium roseum DSM 5159] Length = 423 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 67/103 (65%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+++ +L++Y++GQ+ AK+ +++A+ N ++R D EL NILL+GPTG GKT Sbjct: 66 TPKQLYEQLNQYVVGQERAKKVLSVAVYNHYKRIIFGEDSDVELQKSNILLIGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 126 LLAQTLAKLLDVPFSISDATTLTEAGYVGEDVENILLRLIQAA 168 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 56/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 178 GIIYIDEIDKIARKSDSPSITRDVSGEGVQQALLKILEGTIANVPPHGGRKHPHQEYIQI 237 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF H P DLL Sbjct: 238 DTRNILFICGGAFEGLDEIVRRRIGKDSTIGFGKSARQDGRVENVLHQVIPDDLLKFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L D IL + ++ ++ QY+++ + + L FT D++ A AD+ Sbjct: 298 PEFIGRLPVVAALDPLTHDDLVRILVEPKNAIVKQYQKIFAMDNVELIFTPDALHATADL 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A + GAR L+T +E VL D+ + LQ Sbjct: 358 AERRGT-----GARGLRTTLEEVLLDVMYELPSLQ 387 >gi|149275731|ref|ZP_01881876.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39] gi|149233159|gb|EDM38533.1| ATP-dependent protease ATP-binding subunit [Pedobacter sp. BAL39] Length = 392 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI + +D+Y+IGQ DAK+ +++A+ N ++R QQ+ + E+ NI+LVG TG Sbjct: 41 LKPAEIKAHIDQYVIGQDDAKKVLSVAVYNHYKRLSQQVNKEDEVEIEKSNIMLVGETGT 100 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 101 GKTLLAKTIAKILHVPFCICDATVLTEAGYVGEDVESILTRLLQAA 146 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 59/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290 GIV++DE DK VAR S N VS EGVQ+ LL ++EG+ V+ K Sbjct: 156 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIP 214 Query: 291 INTDHILFIASGAFH-VSR--------------------------------PADL----- 312 +NT++ILFI GAF + R P DL Sbjct: 215 VNTNNILFICGGAFDGIERKIANRLRTQAVGYKVKKDDVDLDLKNLYKYITPQDLKSFGL 274 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV HL L+KS R ILT+ +++L QY +L + EG+ L F ++ +D + D Sbjct: 275 IPELIGRVPVLTHLNPLDKSALRNILTEPKNSLFRQYVKLFEFEGVELVFEDEVLDFIVD 334 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEY 418 A+ +GAR L+++ E ++ D F SD K +VI +Y Sbjct: 335 KAMEYK-----LGARGLRSICEAIMLDAMFDIPSDPGIKELVITLDY 376 >gi|116627469|ref|YP_820088.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus thermophilus LMD-9] gi|122267933|sp|Q03LN0|CLPX_STRTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116100746|gb|ABJ65892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus thermophilus LMD-9] Length = 408 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+E++ L+ Y++GQ KRA+A+A+ N ++R D +L NIL++GPTG G Sbjct: 63 PKELLDILNNYVVGQDRVKRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 KTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D+++A+A A Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F L++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSLEDVTKV 390 >gi|46198559|ref|YP_004226.1| ATP-dependent protease ATP-binding subunit [Thermus thermophilus HB27] gi|61211543|sp|Q72L14|CLPX_THET2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46196181|gb|AAS80599.1| ATP-dependent clp protease ATP-binding subunit clpX [Thermus thermophilus HB27] Length = 399 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI + LD+Y++GQ+ AKRA+++A+ N ++R P E+ NILL+GPTG GKT Sbjct: 60 PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKANILLIGPTGTGKTL 116 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNA 158 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 53/222 (23%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 168 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIP 226 Query: 291 INTDHILFIASGAFH---------VSR-------------------PADL-----LPEIQ 317 +NT +ILFI GAF V + P DL +PE Sbjct: 227 VNTKNILFILGGAFEGLENIVKARVGKTTIGFTGERREREEPLEVIPEDLIKFGMIPEFV 286 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L L + D ILT+ ++ L+ QY+EL + EGI L FT+ ++ +A A+ Sbjct: 287 GRAPLIVQLHPLGEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKR 346 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ ++E+ + D+ F A K +V D ++ Sbjct: 347 GT-----GARGLRAILEKAMVDLMFEAPGSGVKEIVFDLPHL 383 >gi|42520203|ref|NP_966118.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|61211556|sp|Q73I60|CLPX_WOLPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|42409941|gb|AAS14052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila melanogaster] Length = 425 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIVF+DE DKI + G I VS EGVQ+ LL ++EG+ ++ + Sbjct: 182 GIVFIDEIDKITRKSEGTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF H +P DL+ Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ D +LT+ + LI QYK L+ + L+F++++I A+A Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 A++ + GAR L+ ++E +L DI +++ + + T+VI + V L Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVITKKMVEL 407 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 MKL P +I + L ++++GQ+ A+ +++A+ N + Q A E+ NI+L+ Sbjct: 63 MKLLLK-KPEDIKNFLSKHVVGQKHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GPTG GKT +++ LA+++ PF + T TE GYVG +VE ++ L+ A ++V+ R Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181 >gi|114563761|ref|YP_751274.1| ATP-dependent protease ATP-binding subunit [Shewanella frigidimarina NCIMB 400] gi|122299289|sp|Q07ZX9|CLPX_SHEFN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114335054|gb|ABI72436.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella frigidimarina NCIMB 400] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ LD Y+IGQ AK+ +A+A+ N ++R + A ++D EL NILL+GPTG G Sbjct: 67 TPHELRKHLDDYVIGQDQAKKVLAVAVYNHYKRLRNGA-IKDGVELGKSNILLLGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLL 167 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 59/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEADKATISQILSQVEPGDLVKF 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL++ ++ L QY L + E + L+F +D++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEAALVQILSEPKNALTKQYSALFEMEDVELEFRDDALQAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A A++ + GAR L++++E +L D + Q Sbjct: 360 AQKAMSRKT-----GARGLRSIVESILLDTMYDIPSTQ 392 >gi|323495055|ref|ZP_08100144.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio brasiliensis LMG 20546] gi|323310712|gb|EGA63887.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio brasiliensis LMG 20546] Length = 427 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 14/107 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PR+I + LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 68 PRDIRAHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDETKTVGELFMQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELENSELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL + + +++ VVID ++ Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMEDVSKVVIDESVIK 406 >gi|256824762|ref|YP_003148722.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus sedentarius DSM 20547] gi|256688155|gb|ACV05957.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kytococcus sedentarius DSM 20547] Length = 422 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +PREI + L+ Y++GQ +AKRA+A+A+ N ++R ++ E+ NIL++GPTG Sbjct: 63 TPREIHAFLETYVVGQDEAKRALAVAVYNHYKRVDAERSTDPEAPEVAKSNILMIGPTGT 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GKTYLAQTLAKLLQVPFAIADATALTEAGYVGEDVENILVKLIQAA 168 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFVQI 237 Query: 292 NTDHILFIASGAF--------------------HVS------------RPADL-----LP 314 +T +ILFI GAF ++S RP DL +P Sbjct: 238 DTRNILFIVGGAFAGLDDIVAAREGKGGLGFGANLSVRREEGDLLRQIRPEDLVNFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L+ ILT + L+ QY+ L + +G+ L+FTED++ A+A+ A Sbjct: 298 EFIGRVPVVAAVSPLDADALVDILTGPRNALVRQYQHLFRLDGVELEFTEDAVRAVAEQA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + L T GAR L+ +ME VL+ + F SD + + VV+ AE V Sbjct: 358 M-LRRT----GARGLRAIMEEVLQPVMFDVPSDDRIERVVVTAEVV 398 >gi|256371560|ref|YP_003109384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidimicrobium ferrooxidans DSM 10331] gi|256008144|gb|ACU53711.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidimicrobium ferrooxidans DSM 10331] Length = 419 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 65/102 (63%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI+ L+ Y++GQ+ AK+ +++A+ N ++R + A EL N+LL+GPTG GKT Sbjct: 66 PAEIMEFLNAYVVGQESAKKILSVAVYNHYKRIRSGAKDDVELQKSNVLLLGPTGCGKTL 125 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 LAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 167 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 177 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 236 Query: 292 NTDHILFIASGAF------------HVS--------------------RPADLL-----P 314 +T +ILFI GAF H +P DLL P Sbjct: 237 DTSNILFICGGAFVGLDEIVAARLGHRGIGFTGSLAERDGGENILARVQPEDLLRFGLLP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ +++L++ ILT+ ++ L+ QY++++ +G+ L+ T +++A+AD+A Sbjct: 297 EFIGRLPIVGTIENLDRDALISILTEPKNALVKQYQKVLAMDGVELEITPSALEAIADLA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 + L T GAR L+ +ME VL D+ F S SD+Q VID + V H Sbjct: 357 L-LRGT----GARGLKAIMEEVLLDVMFDLPSRSDVQR--CVIDRDVVLEH 400 >gi|237807856|ref|YP_002892296.1| ATP-dependent protease ATP-binding subunit ClpX [Tolumonas auensis DSM 9187] gi|259491271|sp|C4LDB4|CLPX_TOLAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|237500117|gb|ACQ92710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tolumonas auensis DSM 9187] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ AK+ +A+A+ N ++R + + EL NILL+GPTG GK Sbjct: 68 TPHKIRAHLDDYVIGQDLAKKVLAVAVYNHYKRLRSGSSADGVELGKSNILLIGPTGSGK 127 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LARL PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 128 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 180 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 181 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVVEQRTAQGAGIGFNAEVKSKDKKVTLSESFAKVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ IL + ++ L QY+ L K EG L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVVATLTELDENALIQILVEPKNALTKQYQALFKLEGAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A A+ + GAR L++++E VL D + ++ + V+ E+V Sbjct: 361 AHKAMERKT-----GARGLRSIVEGVLLDTMYDLPSVENVSKVVVDEHV 404 >gi|111658475|ref|ZP_01409148.1| hypothetical protein SpneT_02000375 [Streptococcus pneumoniae TIGR4] Length = 372 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 26 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 84 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 85 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 140 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 141 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 200 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 201 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 260 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 261 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 320 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 321 IERKT-----GARGLRSIIEETMLDVMF 343 >gi|198283160|ref|YP_002219481.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666382|ref|YP_002425389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidithiobacillus ferrooxidans ATCC 23270] gi|226706572|sp|B7J791|CLPX_ACIF2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706573|sp|B5EQ29|CLPX_ACIF5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|198247681|gb|ACH83274.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518595|gb|ACK79181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidithiobacillus ferrooxidans ATCC 23270] Length = 423 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+ +++A+ N ++R + D EL NILL+GPTG GKT Sbjct: 66 PMEIRKTLDDYVIGQDVAKKVLSVAVYNHYKRLEHGGKDNEVELDKSNILLIGPTGSGKT 125 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 126 LLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLL 165 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 178 GIVYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 237 Query: 292 NTDHILFIASGAF-----HVS------------------------------RPADL---- 312 +T HILFI GAF VS P DL Sbjct: 238 DTRHILFICGGAFAGLEKSVSARLEKGGMGFNAPLKRRDKEATAAMLMQNLEPEDLVRYG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ L+ L++ ILTD ++ L+ QY++L EG+ L+F +++ A+A Sbjct: 298 LIPEFVGRLPILALLEELDEEALISILTDPKNALVKQYQKLFALEGVTLEFRTEALRAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E++L D + Sbjct: 358 KKALARKT-----GARGLRSILEQILLDTMY 383 >gi|169628673|ref|YP_001702322.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium abscessus ATCC 19977] gi|238688926|sp|B1MMV6|CLPX_MYCA9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169240640|emb|CAM61668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium abscessus] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AK+ +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIRDFLENYVIGQDTAKKTLAVAVYNHYKRIQAGDKARDARGETVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T ++LFI +GAF V AD L Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRVGKRGLGFGAEVKSKADIDTTDHFAEVMPEDLIKFGL 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L++ IL++ ++ L+ QY L + +G+ L+F++D+++A+AD Sbjct: 301 IPEFIGRLPIVASVTNLDRESLIKILSEPKNALVKQYTRLFEMDGVELEFSQDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL+ + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLQPVMY 385 >gi|111018379|ref|YP_701351.1| ATP-dependent protease ATP-binding subunit [Rhodococcus jostii RHA1] gi|226360500|ref|YP_002778278.1| ATP-dependent protease ATP-binding subunit ClpX [Rhodococcus opacus B4] gi|123145276|sp|Q0SGZ3|CLPX_RHOSR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763859|sp|C1AVQ3|CLPX_RHOOB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110817909|gb|ABG93193.1| ATP-dependent Clp protease ATP-binding subunit: ClpX [Rhodococcus jostii RHA1] gi|226238985|dbj|BAH49333.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rhodococcus opacus B4] Length = 426 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIRDFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDARGETVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLERIVSDRVGKRGIGFGAEVRSKAEIDTQDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L +G+ L+FT D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVQILSEPKNALVKQYNRLFDMDGVELEFTTDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ L T GAR L+ +ME VL + + S D+++ VV+ AE V Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVSAETV 403 >gi|87201066|ref|YP_498323.1| ATP-dependent protease ATP-binding subunit [Novosphingobium aromaticivorans DSM 12444] gi|123488135|sp|Q2G3T4|CLPX_NOVAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|87136747|gb|ABD27489.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Novosphingobium aromaticivorans DSM 12444] Length = 418 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I L+ Y+IGQ AKR +++A+ N ++R + D EL NILLVGPTG GK Sbjct: 66 TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGDVELSKSNILLVGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE II L+ + Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 62/232 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 177 QHGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313 ++T +ILFI GAF HV+ P DLL Sbjct: 237 QVDTTNILFICGGAFAGLEKIIADRLQKRSIGFGAHVADPDKRKVGELLQKAEPEDLLKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+ IL + ++ L+ QY +L + E + L FT+D+++A+ Sbjct: 297 GLIPEFVGRLPVIATLNDLDIEALVKILKEPKNALVKQYAKLFELEDVTLTFTDDALEAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A A+ + GAR L++++E +L D F + SD+ E +V+D + V Sbjct: 357 AKKAIERKT-----GARGLRSIVEGLLLDTMFDVPTESDIAE--IVVDKDVV 401 >gi|325261873|ref|ZP_08128611.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] gi|324033327|gb|EGB94604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. D5] Length = 486 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 69/112 (61%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I ++LD Y++GQ+ AK+A+++A+ N ++R + E+ N+L++GPTG GKT Sbjct: 135 APHKIKAQLDEYVVGQEYAKKAMSVAVYNHYKRVATDSMDEIEIEKSNMLMIGPTGSGKT 194 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LARL P + T TE GY+G ++E ++ L+ A N V + R Sbjct: 195 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNEVERAER 246 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ LL L+EGS V G ++NT Sbjct: 247 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLATVNT 306 Query: 294 DHILFIASGAF------------HVS---------------------------RPADLLP 314 +ILFI GAF H + R ++P Sbjct: 307 KNILFICGGAFPDLEDIIKERLSHKTSMGFNAELKDKYEKDKDILSKVTMEDLRTFGMIP 366 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + + ++ QYK+L+ + + L+F E +++A+A+ A Sbjct: 367 EFIGRLPIIFTLKGLDKEMLVQILKEPRNAILKQYKKLLALDEVNLEFDEGALEAIAEKA 426 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + N+ GAR L+ ++E + DI + Sbjct: 427 MKKNT-----GARALRAIIEEFMLDIMY 449 >gi|313831241|gb|EFS68955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL007PA1] Length = 429 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKTENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|217076754|ref|YP_002334470.1| ATP-dependent protease ATP-binding subunit ClpX [Thermosipho africanus TCF52B] gi|217036607|gb|ACJ75129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermosipho africanus TCF52B] Length = 407 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 67/102 (65%), Gaps = 1/102 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P +I +ELD+Y+IGQ+ K+ +++A+ N ++R D D E+ N++L+GPTG GKT Sbjct: 59 PSQIKAELDKYVIGQERVKKILSVAVYNHYKRVFSDIDFDDVEIEKSNVILIGPTGSGKT 118 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++R LA++ PF + T TE GYVG +VE +I L++V Sbjct: 119 LLARTLAKILDVPFAIADATPLTEAGYVGEDVENVILRLLEV 160 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 61/228 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ + ++ Sbjct: 169 QYGIIYIDEIDKIARKSPNPSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPYQEFL 228 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFI GAF HV+ P DL Sbjct: 229 KVDTSNILFIVGGAFDGIEEIIKRRIQSSALGFNAPVKSKKDMRLGEILSHVT-PEDLVQ 287 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L+ L + D ILT+ ++ ++ QYK+L + + L+ TE+++ A Sbjct: 288 YGLIPEFVGRFPVIGALEDLTEDDMVRILTEPKNAILKQYKKLFLLDNVELEVTEEALRA 347 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVID 415 ++ A+ + GAR L++V E V+ D F DL EK +V + Sbjct: 348 ISRKALERGT-----GARALKSVFEEVMIDAMFELPDLNNIEKVIVTE 390 >gi|254480379|ref|ZP_05093626.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2148] gi|214038962|gb|EEB79622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2148] Length = 432 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P+EI LD Y+IGQ+ AK+ +++A+ N ++R Q EL NILLVGPTG Sbjct: 70 PQEINGILDEYVIGQKRAKKVLSVAVYNHYKRLRHAQSQTRGEEVELGKSNILLVGPTGS 129 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 130 GKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQKLL 172 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 185 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 244 Query: 292 NTDHILFIASGAF----HVSR-------------------------------PADL---- 312 +T +ILFI GAF +V R P DL Sbjct: 245 DTSNILFICGGAFAGLDNVIRNRSEKRGIGFGAEVKSKDETSNIGELLFELEPEDLVQYG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+ ILT+ +++L QY +L + EG+ +DF ED + A+A Sbjct: 305 LIPEFVGRLPVIATLEELDAEALVQILTEPKNSLTKQYSKLFEMEGVEVDFREDGLHAVA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ + GAR L++++E +L D ++ + VVID +R Sbjct: 365 EKAMERKT-----GARGLRSILEGILLDSMYNIPSRDDVSKVVIDESVIR 409 >gi|1296452|emb|CAA64618.1| ClpX protein [Bacillus subtilis subsp. subtilis str. 168] Length = 420 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ +L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ Q+K++++ + + L+F E+++ +A Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395 >gi|55980585|ref|YP_143882.1| ATP-dependent protease ATP-binding subunit ClpX [Thermus thermophilus HB8] gi|81821887|sp|Q5SKM7|CLPX_THET8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|55771998|dbj|BAD70439.1| 'ATP-dependent protease Clp, ATPase subunit ClpX [Thermus thermophilus HB8] Length = 399 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI + LD+Y++GQ+ AKRA+++A+ N ++R P E+ NILL+GPTG GKT Sbjct: 60 PQEIKAHLDQYVVGQEAAKRALSVAVYNHYKRLLHP---EAEIGKANILLIGPTGTGKTL 116 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 117 LAETLARFLDVPFAIADATTLTEAGYVGEDVENVLLRLLQNA 158 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 53/222 (23%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 168 GIVYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQEFIP 226 Query: 291 INTDHILFIASGAFH---------VSR-------------------PADL-----LPEIQ 317 +NT +ILFI GAF V + P DL +PE Sbjct: 227 VNTKNILFILGGAFEGLENIVKARVGKTTIGFTGGRREREEPLEVIPEDLIKFGMIPEFV 286 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L L + D ILT+ ++ L+ QY+EL + EGI L FT+ ++ +A A+ Sbjct: 287 GRAPLIVQLHPLTEDDLVRILTEPKNALVKQYQELFRMEGIELRFTQAALKEVARRALKR 346 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ ++E+ + D+ F A + +V D ++ Sbjct: 347 GT-----GARGLRAILEKAMVDLMFEAPGSGVREIVFDLPHL 383 >gi|289426538|ref|ZP_06428281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK187] gi|289428633|ref|ZP_06430316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J165] gi|295131120|ref|YP_003581783.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK137] gi|289153266|gb|EFD01984.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK187] gi|289158031|gb|EFD06251.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J165] gi|291376588|gb|ADE00443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes SK137] gi|313763510|gb|EFS34874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL013PA1] gi|313773447|gb|EFS39413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL074PA1] gi|313793900|gb|EFS41924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA1] gi|313801290|gb|EFS42541.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA2] gi|313808031|gb|EFS46512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA2] gi|313811500|gb|EFS49214.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL083PA1] gi|313816692|gb|EFS54406.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL059PA1] gi|313819597|gb|EFS57311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL046PA2] gi|313822078|gb|EFS59792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA1] gi|313823688|gb|EFS61402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA2] gi|313826012|gb|EFS63726.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL063PA1] gi|313829480|gb|EFS67194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL063PA2] gi|313834853|gb|EFS72567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL056PA1] gi|313839987|gb|EFS77701.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL086PA1] gi|314914810|gb|EFS78641.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA4] gi|314920717|gb|EFS84548.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA3] gi|314924728|gb|EFS88559.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL036PA3] gi|314930597|gb|EFS94428.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL067PA1] gi|314954448|gb|EFS98854.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL027PA1] gi|314957525|gb|EFT01628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA1] gi|314961992|gb|EFT06093.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA2] gi|314963745|gb|EFT07845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL082PA1] gi|314974117|gb|EFT18213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL053PA1] gi|314976593|gb|EFT20688.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL045PA1] gi|314978952|gb|EFT23046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL072PA2] gi|314984412|gb|EFT28504.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA1] gi|314990962|gb|EFT35053.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA3] gi|315079594|gb|EFT51587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL053PA2] gi|315081177|gb|EFT53153.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL078PA1] gi|315083640|gb|EFT55616.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL027PA2] gi|315087059|gb|EFT59035.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL002PA3] gi|315089234|gb|EFT61210.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL072PA1] gi|315095256|gb|EFT67232.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL038PA1] gi|315099138|gb|EFT71114.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL059PA2] gi|315100379|gb|EFT72355.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL046PA1] gi|327328481|gb|EGE70243.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL096PA2] gi|327329653|gb|EGE71409.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL096PA3] gi|327444268|gb|EGE90922.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL043PA2] gi|327444852|gb|EGE91506.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL043PA1] gi|327446338|gb|EGE92992.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL013PA2] gi|327452074|gb|EGE98728.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL092PA1] gi|327454889|gb|EGF01544.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA3] gi|327457825|gb|EGF04480.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL083PA2] gi|328752327|gb|EGF65943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL020PA1] gi|328755277|gb|EGF68893.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL087PA1] gi|328758242|gb|EGF71858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL025PA2] gi|328760010|gb|EGF73593.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL099PA1] gi|332675997|gb|AEE72813.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Propionibacterium acnes 266] Length = 429 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|315108936|gb|EFT80912.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL030PA2] Length = 429 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 59/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DK VAR +GN VS EGVQ+ LL ++EG+ SV + G Sbjct: 185 GIVYIDEIDK-VARKAGNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQ 243 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T ++LFI GAF + RP DL Sbjct: 244 IDTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFG 303 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+A Sbjct: 304 LIPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 D AV + GAR L+ ++E L D+ F Sbjct: 364 DKAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|312873980|ref|ZP_07734016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2052A-d] gi|311090529|gb|EFQ48937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2052A-d] Length = 429 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 299 EFIGRVPVITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 65 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169 >gi|262280903|ref|ZP_06058686.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202] gi|262257803|gb|EEY76538.1| ATP-dependent protease Clp [Acinetobacter calcoaceticus RUH2202] Length = 437 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L+++ME VL Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378 >gi|255658240|ref|ZP_05403649.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella multacida DSM 20544] gi|260849550|gb|EEX69557.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella multacida DSM 20544] Length = 436 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 5/115 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P++I + LD+Y+IGQ +AK+ +++A+ N ++R Q P + EL NIL++GPTG Sbjct: 64 PKDIRAILDQYVIGQDEAKKTLSVAVYNHYKRINMGQGKPGE-DVELSKSNILMIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 123 GKTLLAQSLARILNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVEKAER 177 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQELIQI 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADLL---- 313 +T +ILFI GAF SR P DLL Sbjct: 238 DTTNILFICGGAFDGIEKIIESRLGQKQMGFGAPIKSKRQRNIGDTLRKVLPEDLLKSGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L +L++ ILT ++ L+ QY++L++ +G+ L F +D++ +A Sbjct: 298 IPEFIGRLPVVVTLDALDEEALVNILTKPKNALVKQYQKLLELDGVKLTFDDDALRQIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 A+ + GAR L++++E ++ ++ + ++ T Sbjct: 358 EALKRKT-----GARGLRSIIEGIMRNVMYDVPSIEGVTAC 393 >gi|50843045|ref|YP_056272.1| ATP-dependent protease ATP-binding subunit [Propionibacterium acnes KPA171202] gi|282854722|ref|ZP_06264057.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J139] gi|61211462|sp|Q6A7F1|CLPX_PROAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50840647|gb|AAT83314.1| ATP dependent Clp protease ATP binding subunit [Propionibacterium acnes KPA171202] gi|282582304|gb|EFB87686.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes J139] gi|314923823|gb|EFS87654.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL001PA1] gi|314966163|gb|EFT10262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL082PA2] gi|314982028|gb|EFT26121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA3] gi|315090842|gb|EFT62818.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL110PA4] gi|315095054|gb|EFT67030.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL060PA1] gi|315104286|gb|EFT76262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA2] gi|315106806|gb|EFT78782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL030PA1] gi|327328167|gb|EGE69936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL103PA1] Length = 429 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE ++ A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALGAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|313143532|ref|ZP_07805725.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter cinaedi CCUG 18818] gi|313128563|gb|EFR46180.1| ATP-dependent Clp protease ATP-binding subunit clpX [Helicobacter cinaedi CCUG 18818] Length = 424 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 6/118 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD-ELMPKNILLVGP 61 SP+E+ + LD Y+IGQ AK+ ++A+ N ++R +Q+ LR+ EL NILL+GP Sbjct: 68 SPKELKARLDEYVIGQDSAKKVFSVAVYNHYKRILQGEKQISNALREVELSKSNILLIGP 127 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA+ P + T TE GYVG +VE I+ L+ A V+++ + Sbjct: 128 TGSGKTLMAQTLAKFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKKAEK 185 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 186 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 245 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314 +T ILF+ GAF H + P DL+ P Sbjct: 246 DTKDILFVCGGAFDGLSDIIKRRLGGNVLGFHGEKKGKSEESALLEYVEPDDLISYGLIP 305 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L + K ILT ++ L+ QY+++ + +G L F + +I+A+A++A Sbjct: 306 ELIGRLHMISTLSPITKEAMVEILTKPKNALVKQYQKIFELDGANLKFDKGAIEAIAELA 365 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ + GAR L+ +ME + D+ + +L+ + I E + Sbjct: 366 ISRKT-----GARGLRAIMEEAMIDLMYELPELEGYEISISKECI 405 >gi|268611240|ref|ZP_06144967.1| ATP-dependent protease ATP-binding subunit ClpX [Ruminococcus flavefaciens FD-1] Length = 435 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 P EI LD Y+IGQ +AK+++A+A+ N ++R Q+ + +L N+LL+GPTG Sbjct: 68 LKPVEIKEYLDEYVIGQDEAKKSLAVAVYNHYKRITAQEQKDEDGIDLQKSNVLLLGPTG 127 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGKT +++ LA+L PF + T TE GYVG +VE ++ L+ A Sbjct: 128 VGKTFLAQTLAKLLNVPFAIADATTITEAGYVGDDVENVLLRLIQAA 174 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 65/246 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + + VS EGVQ+ LL ++EG S+V + G I Sbjct: 184 GIIYIDEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEVIQI 243 Query: 292 NTDHILFIASGAF-----HVSR---------------------------PADLL-----P 314 NT +ILFI GAF + + P DL+ P Sbjct: 244 NTKNILFICGGAFDGLEKQIQKRIGKSPIGFGGELKARAEEENIFKKVVPKDLVKFGMVP 303 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ LI QYK+L +GI L+ +D++ +A A Sbjct: 304 EFVGRLPVISVLEELDENSLVRILTEPKNALIKQYKKLFSYDGIELEIEDDALIEIAKKA 363 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI---------DAEYVRLHIG 424 + + GAR L+++ME +L D FS SD VV+ E ++ I Sbjct: 364 IAQKT-----GARGLRSIMEGILLDTMFSVPSDGSVSKVVVKKDCVTDDKQPELIKSKIN 418 Query: 425 DFPSET 430 D P T Sbjct: 419 DKPETT 424 >gi|22537459|ref|NP_688310.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus agalactiae 2603V/R] gi|76798608|ref|ZP_00780836.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae 18RS21] gi|77409179|ref|ZP_00785891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae COH1] gi|46576570|sp|Q8DZ10|CLPX_STRA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|22534337|gb|AAN00183.1|AE014252_6 ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae 2603V/R] gi|76586042|gb|EAO62572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae 18RS21] gi|77172225|gb|EAO75382.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae COH1] Length = 408 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+E++ L++Y++GQ AKRA+A+A+ N ++R D+ L NIL++GPTG GK Sbjct: 64 PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 NT +ILFI GAF SR D L+P Sbjct: 237 NTKNILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+AD A Sbjct: 297 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 357 IERKT-----GARGLRSIIEETMLDIMF 379 >gi|294141767|ref|YP_003557745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella violacea DSS12] gi|293328236|dbj|BAJ02967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella violacea DSS12] Length = 418 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R + ++ +D EL NILL+GPTG G Sbjct: 60 TPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLK-NSNPKDGVELGKSNILLIGPTGSG 118 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ AR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 119 KTLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 172 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 173 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 232 Query: 292 NTDHILFIASGAFH------------------------------VSR------PADL--- 312 +T ILFI GAF +S P DL Sbjct: 233 DTSKILFICGGAFSGLEKVIEQRSQTGSGIGFGAQIKGESDKATISEILMQVEPEDLVKY 292 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL++ ++ L Q+ L + EG+ L+F ED++ A+ Sbjct: 293 GLIPEFIGRLPVLSTLAELDEDALVQILSEPKNALTKQFAALFEMEGVELEFREDALKAI 352 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E +L DI + + + VVID V+ Sbjct: 353 AAKAMTRKT-----GARGLRSIVEGILLDIMYDLPSVDDVAKVVIDESVVK 398 >gi|259046802|ref|ZP_05737203.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Granulicatella adiacens ATCC 49175] gi|259036570|gb|EEW37825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Granulicatella adiacens ATCC 49175] Length = 413 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE--LMPKNILLVGPTG 63 P+EI LD Y++GQ+ AK+++A+A+ N ++R L + DE L NI L+GPTG Sbjct: 60 LKPQEIRKVLDEYVVGQEHAKKSLAVAVYNHYKRINHLLNEDEDEVELQKSNICLIGPTG 119 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ Sbjct: 120 SGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLL 163 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 59/239 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQELIQI 235 Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADL-----LP 314 +T +ILFI GAF H S P DL +P Sbjct: 236 DTSNILFIVGGAFDGIETIVKERLGAKVIGFGSSNKNLSSHESLMQLIIPEDLQKFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L+K D ILT + L+ QY++L + + L+F ++DA+A A Sbjct: 296 EFIGRLPITAALEPLSKEDLVNILTKPRNALVKQYQKLFAMDDVELEFEPKALDAIASKA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMY 433 + + GAR L++++E V+ D+ F + T V+ E + G + D+Y Sbjct: 356 IERRT-----GARGLRSIIESVMMDLMFEIPSRNDITKVVVTESIVTGTG----QPDLY 405 >gi|25011425|ref|NP_735820.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus agalactiae NEM316] gi|76786965|ref|YP_329953.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus agalactiae A909] gi|77406716|ref|ZP_00783755.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae H36B] gi|77411190|ref|ZP_00787542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae CJB111] gi|77414070|ref|ZP_00790239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae 515] gi|46576576|sp|Q8E4L8|CLPX_STRA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123601634|sp|Q3K0K0|CLPX_STRA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24412963|emb|CAD47042.1| unknown [Streptococcus agalactiae NEM316] gi|76562022|gb|ABA44606.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae A909] gi|77159868|gb|EAO71010.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae 515] gi|77162808|gb|EAO73767.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae CJB111] gi|77174679|gb|EAO77509.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus agalactiae H36B] Length = 408 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+E++ L++Y++GQ AKRA+A+A+ N ++R D+ L NIL++GPTG GK Sbjct: 64 PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 176 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 NT +ILFI GAF SR D L+P Sbjct: 237 NTKNILFIVGGAFDGIEDLVKQRLGEKIIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+AD A Sbjct: 297 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 357 IERKT-----GARGLRSIIEETMLDIMF 379 >gi|325124453|gb|ADY83976.1| ATP-dependent protease ATP-binding subunit [Acinetobacter calcoaceticus PHEA-2] Length = 437 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L+++ME VL Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378 >gi|299771639|ref|YP_003733665.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp. DR1] gi|298701727|gb|ADI92292.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp. DR1] Length = 437 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 238 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 298 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L+++ME VL Sbjct: 358 KKALERNT-----GARGLRSIMENVL 378 >gi|32266682|ref|NP_860714.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter hepaticus ATCC 51449] gi|46576465|sp|Q7VGY5|CLPX_HELHP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|32262733|gb|AAP77780.1| ATP-dependent Clp protease [Helicobacter hepaticus ATCC 51449] Length = 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 11/123 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPAD-LRD--ELMPKNI 56 SP+E+ ++LD Y+IGQ +AKR ++A+ N ++R +++P L+D EL NI Sbjct: 65 SPKELKAKLDEYVIGQDEAKRVFSVAVYNHYKRIKANSLSEEEMPNPILQDDVELSKSNI 124 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 LL+GPTG GKT +++ LAR P + T TE GYVG +VE I+ L+ A V++ Sbjct: 125 LLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVKK 184 Query: 117 SRR 119 + + Sbjct: 185 AEK 187 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 188 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFVQI 247 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADLL-----P 314 NT ILF+ GAF H + P DL+ P Sbjct: 248 NTSDILFVCGGAFDGLGDIIKRRLGGNVLGFHGEKKGKSEEDALLKYVEPDDLISYGLIP 307 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L ++K ILT ++ LI QY+++ + +G L F +D+I+++A++A Sbjct: 308 ELIGRLHMITTLSPISKEAMVEILTKPKNALIKQYQKIFEIDGATLHFEKDAIESIAELA 367 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME + D+ + +L + I E + Sbjct: 368 IARKT-----GARGLRSIMEGAMIDLMYDLPELAGYEITISKECI 407 >gi|119717697|ref|YP_924662.1| ATP-dependent protease ATP-binding subunit ClpX [Nocardioides sp. JS614] gi|166214794|sp|A1SME0|CLPX_NOCSJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|119538358|gb|ABL82975.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nocardioides sp. JS614] Length = 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 13/113 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNIL 57 P+EI L+ Y+IGQ+ AK+++A+A+ N ++R Q A L+ E+ NIL Sbjct: 64 PKEIFEFLNSYVIGQEQAKKSLAVAVYNHYKRVQ--AGLQPMSGKHSKEEVVEVAKSNIL 121 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 VIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 174 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 184 GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 243 Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312 +T +ILF+ GAF H+ RP DL Sbjct: 244 DTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVRGKAEREAEDLLAQVRPEDLTKFGL 303 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L+ QY++L + +G+ L+FT D+I+A+AD Sbjct: 304 IPEFIGRLPLIASVSKLDQEALVQILTEPRNALVKQYQKLFELDGVELEFTPDAIEAIAD 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E VL + + Sbjct: 364 NALERGT-----GARGLRAIIEEVLLHVMY 388 >gi|320120477|gb|ADW16162.1| hypothetical protein HMPREF0389_01717 [Filifactor alocis ATCC 35896] Length = 419 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD-ELMPKNILLVGP 61 P EI + LD Y+IGQ++AK+ +A+A+ N ++R P + ++ EL N++++GP Sbjct: 61 LKPEEIKAILDEYVIGQENAKKTLAVAVYNHYKRIYNAVPTPKNSKEVELQKSNVIMIGP 120 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TGSGKTLLAQTLAKILHVPFAIADATALTEAGYVGEDVENILLKLIQAA 169 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + + VS EGVQ+ LL ++E + + + I Sbjct: 179 GIIYIDEIDKIARKTDNPSLTRDVSGEGVQQALLKILESTKANVPPQGGRKHPHQDFLQI 238 Query: 292 NTDHILFIASGAF---------------------HVSRPAD------------------L 312 +T +ILFI GAF + + D L Sbjct: 239 DTTNILFILGGAFDGLEEIVKKRQGERTMGFGAKNQKKTPDSNISFYEKVESQDLLKYGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE R PV V L++L++ ILT+ ++ L+ QYK+L + +G+ L+ ED++ A+A Sbjct: 299 IPEFVSRVPVVVALQNLDEQALIRILTEPKNALLKQYKKLFELDGVELEVEEDALIAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ IGAR L++++E ++ DI + Sbjct: 359 QAIDRK-----IGARGLRSILENIMIDIMY 383 >gi|293610273|ref|ZP_06692574.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827505|gb|EFF85869.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 439 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----LRDELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ + E+ NILL+GPTG Sbjct: 65 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGHNGHVSKEVEIAKSNILLIGPTGS 124 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 125 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 170 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 180 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 240 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 300 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFTMENVDLIFEDSALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L+++ME VL Sbjct: 360 KKALERNT-----GARGLRSIMENVL 380 >gi|225021670|ref|ZP_03710862.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii ATCC 33806] gi|305681341|ref|ZP_07404148.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium matruchotii ATCC 14266] gi|224945661|gb|EEG26870.1| hypothetical protein CORMATOL_01698 [Corynebacterium matruchotii ATCC 33806] gi|305659546|gb|EFM49046.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium matruchotii ATCC 14266] Length = 427 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 10/121 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD---ELMPKNILL 58 P EI + LD+Y++GQ +AKR +A+A+ N ++R + RD EL NIL+ Sbjct: 67 PSEIAAFLDKYVVGQDEAKRILAVAVYNHYKRVRAEDARTLGGRKYRDDDTELQKSNILM 126 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V+ ++ Sbjct: 127 LGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVQRAQ 186 Query: 119 R 119 R Sbjct: 187 R 187 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 59/215 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S+ + G + Sbjct: 188 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQDFIQL 247 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI +GAF +VS P DL Sbjct: 248 DTSNILFIVAGAFAGLEKVIEARRGKKALGFGAEIPSKADQNDMEIFKYVS-PEDLVKFG 306 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ + +L++ +LT+ +++L+ QY+ L + + L F +D+++ +A Sbjct: 307 MIPEFIGRLPIVATVGNLDQKSLVKVLTEPKNSLVKQYQRLFDMDRVELLFEDDALEVIA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 D A++ + GAR L+ +ME +L I F D Sbjct: 367 DKALDRGT-----GARGLRAIMEEILLPIMFEVPD 396 >gi|169634425|ref|YP_001708161.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii SDF] gi|169797266|ref|YP_001715059.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii AYE] gi|184156808|ref|YP_001845147.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii ACICU] gi|213155940|ref|YP_002317985.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii AB0057] gi|215484707|ref|YP_002326942.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii AB307-0294] gi|239500789|ref|ZP_04660099.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii AB900] gi|260556148|ref|ZP_05828367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii ATCC 19606] gi|301346761|ref|ZP_07227502.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii AB056] gi|301512253|ref|ZP_07237490.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii AB058] gi|301594242|ref|ZP_07239250.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii AB059] gi|332851227|ref|ZP_08433300.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6013150] gi|332866081|ref|ZP_08436809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6013113] gi|332873221|ref|ZP_08441178.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6014059] gi|226706570|sp|B7H092|CLPX_ACIB3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|226706571|sp|B7I5E4|CLPX_ACIB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238685491|sp|A3M1Y8|CLPX_ACIBT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238688025|sp|B0V4T7|CLPX_ACIBY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238688111|sp|B0VKU4|CLPX_ACIBS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238691033|sp|B2I3C2|CLPX_ACIBC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169150193|emb|CAM88087.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AYE] gi|169153217|emb|CAP02313.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii] gi|183208402|gb|ACC55800.1| ATP-dependent protease Clp, ATPase subunit [Acinetobacter baumannii ACICU] gi|193076290|gb|ABO10932.2| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii ATCC 17978] gi|213055100|gb|ACJ40002.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii AB0057] gi|213988694|gb|ACJ58993.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii AB307-0294] gi|260410203|gb|EEX03502.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii ATCC 19606] gi|322506700|gb|ADX02154.1| clpX [Acinetobacter baumannii 1656-2] gi|323516574|gb|ADX90955.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii TCDC-AB0715] gi|332730107|gb|EGJ61434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6013150] gi|332734827|gb|EGJ65920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6013113] gi|332738733|gb|EGJ69603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acinetobacter baumannii 6014059] Length = 437 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGV 64 P EI + LD+Y+IGQ AK+ +++A+ N ++R ++ +D E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 101/372 (27%) Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151 I + VDV +++V+ S++ E + AS + I AL +G+ T V Sbjct: 32 ICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALDQYVIGQDLAKKTLSVAVYNH 91 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K+L+ G+ D+E+A SN + G G L++ ++++ Sbjct: 92 YKRLKVGQSGHVSKDVEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258 P M D + L + V D +V+ GI+++DE DKI + Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAF- 304 I VS EGVQ+ LL ++EG+ S ++ I+T +ILFI GAF Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFA 251 Query: 305 ----------------------------------HVSRPADL-----LPEIQGRFPVRVH 325 P DL +PE GR PV Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFGLIPEFIGRLPVIAT 311 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A A+ N+ G Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNT-----G 366 Query: 386 ARRLQTVMERVL 397 AR L++++E VL Sbjct: 367 ARGLRSILENVL 378 >gi|1770075|emb|CAA99537.1| ATP dependent Clp protease [Bacillus subtilis] Length = 420 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSQSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ +L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLELIQAA 166 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI G F + R P DLL Sbjct: 236 DTTNILFICGGRFDGIEQIIKRRLAQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ Q+K++++ + + L+F E+++ +A Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395 >gi|319745297|gb|EFV97615.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus agalactiae ATCC 13813] Length = 416 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+E++ L++Y++GQ AKRA+A+A+ N ++R D+ L NIL++GPTG GK Sbjct: 72 PKELLEILNQYVVGQDRAKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGK 131 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 132 TFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 184 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 244 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 NT +ILFI GAF SR D L+P Sbjct: 245 NTKNILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D++ A+AD A Sbjct: 305 EFIGRLPVVAALELLTAEDLVRILTEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F ++ T V Sbjct: 365 IERKT-----GARGLRSIIEETMLDIMFEIPSQEDVTKV 398 >gi|313680147|ref|YP_004057886.1| ATP-dependent clp protease ATP-binding subunit clpx [Oceanithermus profundus DSM 14977] gi|313152862|gb|ADR36713.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus profundus DSM 14977] Length = 398 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI + LD Y+IGQ++AK+ +A+A+ N ++R Q P EL N+LL+GPTG GKT Sbjct: 60 PAEIKAFLDDYVIGQEEAKKVLAVAVYNHYKRLQHP---EAELGKSNVLLIGPTGTGKTL 116 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 117 LAETLARQLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 158 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 52/212 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ +V + G ++ Sbjct: 168 GIIYIDEIDKIARKSEGPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPHQETIAL 227 Query: 292 NTDHILFIASGAFHVSR---------------------------PADL-----LPEIQGR 319 NT +ILFI GAF P DL +PE GR Sbjct: 228 NTRNILFILGGAFDGLEAIVKARTDQTPIGFRTQAPEAGTLEVIPEDLVKYGLIPEFVGR 287 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV V L L++ D ILT+ ++ L+ QY+ L + EG+ L+ TE ++ +A A+ + Sbjct: 288 VPVIVQLHELSEDDLVRILTEPKNALVRQYRTLFELEGVNLEITEAALREVARRALERGT 347 Query: 380 TVGDIGARRLQTVMERVLEDISF--SASDLQE 409 GAR L++V+ER + D+ + AS ++E Sbjct: 348 -----GARGLRSVIERAMVDLMYEVPASGVRE 374 >gi|256841000|ref|ZP_05546507.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parabacteroides sp. D13] gi|256736843|gb|EEU50170.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parabacteroides sp. D13] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234 Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L + +GI L F E + + D Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S + K + + EY + Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++++ N ++R Q++ AD E+ NI++VG TG GK Sbjct: 63 PEDIKTFLDQYVIGQNDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174 >gi|328948167|ref|YP_004365504.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema succinifaciens DSM 2489] gi|328448491|gb|AEB14207.1| ATP-dependent Clp protease ATP-binding subunit clpX [Treponema succinifaciens DSM 2489] Length = 420 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 8/109 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGP 61 SP+E + LD+Y+IGQ AK+ +++A+ N +++ QQL D++ E NILL+GP Sbjct: 64 SPKEFKAYLDQYVIGQDYAKKVLSVAVYNHYKQLSISKEQQLTMDVKIE--KSNILLLGP 121 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ PF + T TE GYVG +VE ++ L++ A Sbjct: 122 TGSGKTLLAKTLAQKLNVPFAIADATTLTEAGYVGEDVENVLLKLINAA 170 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 180 GIIFIDEIDKIGRKSENTSITRDVSGEGVQQALLKILEGTHASVPPQGGRKHPNQEMIDI 239 Query: 292 NTDHILFIASGAF-----------------------HVSRPA----------------DL 312 +T +ILFI GAF H + L Sbjct: 240 DTTNILFICGGAFVGLDKIIEQRLSTASIGFGAEGTHRTNEERMELLNQVTSDDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ LK LNK D + IL + ++ + Q++ + + + L F +D+ID +A+ Sbjct: 300 IPELIGRLPMTCALKELNKEDLKRILVEPKNAITKQFQAIFAIDDVELTFDDDAIDQIAE 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419 +A+ + GAR L+ ++E +L D+ + ++ +K +VI + V Sbjct: 360 MAIRSKT-----GARGLRAIVEHILLDLMYEVPSVKGKKKLVITKDIV 402 >gi|256544469|ref|ZP_05471842.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus vaginalis ATCC 51170] gi|256399794|gb|EEU13398.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus vaginalis ATCC 51170] Length = 402 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD+Y+I Q+ AK+ +++++ N ++R D +D EL NIL++GPTG G Sbjct: 61 TPSEIKDYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDSKDDVELQKSNILMLGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE II LV A Sbjct: 121 KTLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 53/206 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 234 Query: 292 NTDHILFIASGAFHVSRP-------------------------AD----------LLPEI 316 +T +ILFI GAF + AD L+PE Sbjct: 235 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSEDSENKEVSLADVTTEDLLKFGLIPEF 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L+ L+ + IL + +++L+ QY++L + +G+ L F ++++ +A+ A Sbjct: 295 IGRVPIVVSLEDLDVNSLVKILQEPKNSLLKQYQKLFELDGVKLTFEDEAVKEIAEKAFK 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+T++E +L D+ F Sbjct: 355 QET-----GARGLRTILEDLLLDVMF 375 >gi|167765437|ref|ZP_02437550.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC 43183] gi|167697065|gb|EDS13644.1| hypothetical protein BACSTE_03827 [Bacteroides stercoris ATCC 43183] Length = 414 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 179 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTNVVGYGAVRNTAAIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + +G+ L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRTALRAILTEPKNSIIKQYVKLFEMDGVKLTFEDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 A+ +GAR L++++E ++ D F + + +Y R + Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDAMFEIPSEHKDGFTVTLDYARAQL 403 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ DAKR +++++ N ++R Q D E+ NI++VG TG GKT Sbjct: 67 PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKAGDDDVEIEKSNIIMVGSTGTGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|116492902|ref|YP_804637.1| ATP-dependent protease ATP-binding subunit ClpX [Pediococcus pentosaceus ATCC 25745] gi|122265634|sp|Q03F27|CLPX_PEDPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116103052|gb|ABJ68195.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pediococcus pentosaceus ATCC 25745] Length = 418 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 5/108 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR-----DELMPKNILLVGPT 62 +P EIV L++Y+IGQ++AK+ +++A+ N ++R A+ + EL NI L+GPT Sbjct: 64 TPAEIVDYLNQYVIGQEEAKKTLSVAVYNHYKRINKMAETKADEDEPELQKSNISLIGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GSGKTFLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 171 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 59/222 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 181 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------HVSR-------------PADLL----- 313 NT +ILFI GAF + S P DLL Sbjct: 241 NTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTNASTTVEEDKSLMQQVIPEDLLNFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ L + D ILT+ ++ L+ QYK L+ +G+ L FT ++ A+A+ Sbjct: 301 PEFIGRLPILSALEKLTEEDLVHILTEPKNALVKQYKTLLGLDGVELKFTPQALHAIANQ 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A++ N+ GAR L++++E V+ DI F S +D+ + TV Sbjct: 361 AISRNT-----GARGLRSIIENVMRDIMFEIPSRNDVAKVTV 397 >gi|256961587|ref|ZP_05565758.1| ClpX [Enterococcus faecalis Merz96] gi|256952083|gb|EEU68715.1| ClpX [Enterococcus faecalis Merz96] Length = 417 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 64 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 169 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 57/209 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T ++LFI GAF H+ P DLL Sbjct: 239 DTTNVLFIVGGAFDGIETIVKNRLGKKTIGFGKTNSALNEEESIMQHII-PEDLLKFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L D ILT+ ++ L+ QY++L+ + L+F +++ A+A Sbjct: 298 PEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E ++ D+ F Sbjct: 358 AIERNT-----GARGLRSIIEEIMMDVMF 381 >gi|29376445|ref|NP_815599.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus faecalis V583] gi|255972438|ref|ZP_05423024.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T1] gi|255975538|ref|ZP_05426124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T2] gi|256619398|ref|ZP_05476244.1| ClpX [Enterococcus faecalis ATCC 4200] gi|256762854|ref|ZP_05503434.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T3] gi|256853438|ref|ZP_05558808.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis T8] gi|256959236|ref|ZP_05563407.1| ClpX [Enterococcus faecalis DS5] gi|256964803|ref|ZP_05568974.1| ClpX [Enterococcus faecalis HIP11704] gi|257079304|ref|ZP_05573665.1| ClpX [Enterococcus faecalis JH1] gi|257082257|ref|ZP_05576618.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis E1Sol] gi|257084874|ref|ZP_05579235.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis Fly1] gi|257087129|ref|ZP_05581490.1| ClpX [Enterococcus faecalis D6] gi|257090206|ref|ZP_05584567.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis CH188] gi|257416359|ref|ZP_05593353.1| ClpX [Enterococcus faecalis AR01/DG] gi|257419607|ref|ZP_05596601.1| ATP-dependent protease ClpX [Enterococcus faecalis T11] gi|257422287|ref|ZP_05599277.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis X98] gi|294779794|ref|ZP_06745181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis PC1.1] gi|300861010|ref|ZP_07107097.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TUSoD Ef11] gi|46576517|sp|Q833M7|CLPX_ENTFA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29343909|gb|AAO81669.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis V583] gi|255963456|gb|EET95932.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T1] gi|255968410|gb|EET99032.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T2] gi|256598925|gb|EEU18101.1| ClpX [Enterococcus faecalis ATCC 4200] gi|256684105|gb|EEU23800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Enterococcus faecalis T3] gi|256711897|gb|EEU26935.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis T8] gi|256949732|gb|EEU66364.1| ClpX [Enterococcus faecalis DS5] gi|256955299|gb|EEU71931.1| ClpX [Enterococcus faecalis HIP11704] gi|256987334|gb|EEU74636.1| ClpX [Enterococcus faecalis JH1] gi|256990287|gb|EEU77589.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis E1Sol] gi|256992904|gb|EEU80206.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis Fly1] gi|256995159|gb|EEU82461.1| ClpX [Enterococcus faecalis D6] gi|256999018|gb|EEU85538.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis CH188] gi|257158187|gb|EEU88147.1| ClpX [Enterococcus faecalis ARO1/DG] gi|257161435|gb|EEU91395.1| ATP-dependent protease ClpX [Enterococcus faecalis T11] gi|257164111|gb|EEU94071.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecalis X98] gi|294453168|gb|EFG21583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis PC1.1] gi|295113200|emb|CBL31837.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Enterococcus sp. 7L76] gi|300850049|gb|EFK77799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis TUSoD Ef11] gi|323481059|gb|ADX80498.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecalis 62] gi|327535434|gb|AEA94268.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus faecalis OG1RF] Length = 417 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--ELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ+ AKR +++A+ N ++R Q A +D EL NI L+GPTG Sbjct: 64 PQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 169 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 57/209 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T ++LFI GAF H+ P DLL Sbjct: 239 DTTNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALNEEESIMQHII-PEDLLKFGLI 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L D ILT+ ++ L+ QY++L+ + L+F +++ A+A Sbjct: 298 PEFIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAK 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E ++ D+ F Sbjct: 358 AIERNT-----GARGLRSIIEEIMMDVMF 381 >gi|17231176|ref|NP_487724.1| ATP-dependent protease ATP-binding subunit ClpX [Nostoc sp. PCC 7120] gi|21263468|sp|Q8YQX7|CLPX_ANASP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|17132817|dbj|BAB75383.1| ATP-dependent Clp protease regulatory subunit [Nostoc sp. PCC 7120] Length = 445 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60 PREI LD ++IGQ +AK+ +++A+ N ++R + D EL NILL+G Sbjct: 82 PREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAILQSKGSGKNGDDAVELQKSNILLIG 141 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 PTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R AD+L Sbjct: 261 DTSNILFICGGAFVGLEKVVDQRGGKKSIGFVQPGEGQSKEKRAADVLRHLEPDDLVKFG 320 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ + L++ ILT S L+ QY++L+K + + LDF D++ A+A Sbjct: 321 MIPEFIGRVPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPDALKAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 381 QEAYRRKT-----GARALRGIVEELMLDVMY 406 >gi|314986604|gb|EFT30696.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL005PA2] Length = 429 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|110597770|ref|ZP_01386054.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium ferrooxidans DSM 13031] gi|110340677|gb|EAT59157.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium ferrooxidans DSM 13031] Length = 438 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 6/117 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGPT 62 SP+ I+ LD+Y++GQ+ AK+++++A+ N ++R Q+ D DE++ NILL+GPT Sbjct: 80 SPKAIMDSLDKYVVGQEIAKKSLSVAVYNHYKRIESQEWMHDEDDEVVIEKSNILLIGPT 139 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 G GKT +++ LA + PF V+ T TE GYVG +VE I+ L+ + N+ R R Sbjct: 140 GTGKTLLAQTLANMLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 196 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 61/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 255 NINTKNILFICGGAFEGLDRLIAKRVSKSSMGFGSKVKSKQTGYDPEILRYVTQDDLHEY 314 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ R IL + ++ ++ QYK+L + +G+ L+FTE+++D + Sbjct: 315 GLIPEFIGRLPVISTLDLLDEKALRNILVEPKNAIVKQYKKLFEMDGVELEFTEEALDKV 374 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 +A+ + GAR L++V+E V+ DI F ++ Sbjct: 375 VSIAIERGT-----GARALRSVLENVMIDIMFELPSMK 407 >gi|296170474|ref|ZP_06852062.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894945|gb|EFG74666.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|294101894|ref|YP_003553752.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aminobacterium colombiense DSM 12261] gi|293616874|gb|ADE57028.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aminobacterium colombiense DSM 12261] Length = 429 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P E+ LD+Y+IGQ+DAK+ +++A+ N ++R ++ D EL N+LL+GPTG GK Sbjct: 76 PAEVKKFLDQYVIGQEDAKKILSVAVYNHFKRISTMSEENDDIELQKSNVLLIGPTGSGK 135 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 136 TLLAQSLAKKLNVPFAMADATTLTEAGYVGEDVENILVRLLQAA 179 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 61/231 (26%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---- 289 IQ E GI+++DE DKI + I VS EGVQ+ LL ++EG S+V K G Sbjct: 183 IQAAER-GIIYIDELDKITRKSESASITRDVSGEGVQQALLKILEGTLSNVPPKGGRKHP 241 Query: 290 -----SINTDHILFIASGAF---------------------------HVS-------RPA 310 ++T +ILFI GAF H + +P Sbjct: 242 YQDFIQMDTSNILFICGGAFAGIEEVIGRRVNKKMIGFGGDILSVKEHRNYELMRQVQPE 301 Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DL+ PE+ GR PV V L+ L+ IL + ++ LI QY++ + EG+ L F +D Sbjct: 302 DLMAFGFIPELIGRLPVVVPLEELDDDALARILVEPKNALIRQYQKTFEIEGVKLFFEQD 361 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVV 413 +I A+A A N+ GAR L+++ME ++ D+ + S S+ EK ++ Sbjct: 362 AIKAIAKEARKKNT-----GARGLRSIMEYLMLDLMYEIPSRSNEVEKIII 407 >gi|225848211|ref|YP_002728374.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurihydrogenibium azorense Az-Fu1] gi|225643885|gb|ACN98935.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurihydrogenibium azorense Az-Fu1] Length = 405 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGV 64 +P EI ++LD Y+IGQ+ AK+ +++A+ N ++R + L + E+ NILL+GPTG Sbjct: 55 TPAEIKAKLDEYVIGQEKAKKILSVAVYNHYKRIYQKDLFKNTGVEVEKSNILLIGPTGS 114 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 115 GKTLLARTLARILNVPFAIADATNITEAGYVGEDVESILARLLQNA 160 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GIV++DE DKI A+ SG+ ++R EGVQ+ LL ++EG+ +V + G Sbjct: 170 GIVYIDEVDKI-AKKSGDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFI 228 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 I+T +ILFI GAF +P DL+ Sbjct: 229 QIDTTNILFILGGAFVGLEDIIRQRLGKKAIGFGAEIKSKKEEGDLLEQVQPEDLIKFGL 288 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV LK L++ +LT+ ++ LI QY+ L+ +GI L+FTED++ +A Sbjct: 289 IPEFLGRIPVIATLKELDEDMLVRVLTEPKNALIKQYQALLAVDGIDLEFTEDALREIAR 348 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ ++E ++ DI + A + + K VVID + V Sbjct: 349 EAIKRKT-----GARGLRAIIEDIMLDIMYEAPNQKTLKKVVIDKDVV 391 >gi|183601062|ref|ZP_02962555.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827] gi|188019402|gb|EDU57442.1| hypothetical protein PROSTU_04685 [Providencia stuartii ATCC 25827] Length = 425 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 14/120 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P EI LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NILL+ Sbjct: 66 TPHEIREHLDDYVIGQEQAKKVLSVAVYNHYKR------LRNGDTTAEGVELGKSNILLI 119 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 120 GPTGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T ILFI GAF + P DL+ Sbjct: 240 DTSKILFICGGAFAGLDKVIGQRLNTRSGIGFAAEVKGESDKISEGELLTQTEPEDLIKF 299 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG L+F E+++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELSEEALIQILQEPKNALTKQYQALFSLEGTELEFREEALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A A+ + GAR L++++E L + + ++ EK VV Sbjct: 360 AKKAMARKT-----GARGLRSIVEAALLNTMYDLPSMEGVEKVVV 399 >gi|293189654|ref|ZP_06608371.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces odontolyticus F0309] gi|292821392|gb|EFF80334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Actinomyces odontolyticus F0309] Length = 419 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPK-NILLVGPTGVG 65 PREI L+ ++IGQ AKRA+++A+ N ++R + + D L K NILL+GPTG G Sbjct: 65 PREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREVGNAEDMLGTKSNILLLGPTGTG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++R LARL PF V+ T TE GYVG +VE I+ L+ A ++++ + Sbjct: 125 KTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEK 178 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEI 238 Query: 292 NTDHILFIASGAF-----------------------HVSRPADL--------------LP 314 +T ILFIA+GAF S DL +P Sbjct: 239 DTSGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAEDLHKFGMIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ K L + D +LT+ ++L+ QY+ L + + + L+FT +++ A+A A Sbjct: 299 EFIGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMDLEFTHEALLAIAARA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 N T GAR L ++ME+ L D+ F Sbjct: 359 -NERKT----GARGLSSIMEQTLSDLMF 381 >gi|15618755|ref|NP_225041.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila pneumoniae CWL029] gi|15836379|ref|NP_300903.1| ATP-dependent protease ATP-binding subunit [Chlamydophila pneumoniae J138] gi|16752193|ref|NP_445560.1| ATP-dependent protease ATP-binding subunit [Chlamydophila pneumoniae AR39] gi|33242206|ref|NP_877147.1| ATP-dependent protease ATP-binding subunit [Chlamydophila pneumoniae TW-183] gi|6225166|sp|Q9Z760|CLPX_CHLPN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|4377161|gb|AAD18984.1| CLP Protease ATPase [Chlamydophila pneumoniae CWL029] gi|7189936|gb|AAF38799.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX [Chlamydophila pneumoniae AR39] gi|8979220|dbj|BAA99054.1| CLP protease ATPase [Chlamydophila pneumoniae J138] gi|33236717|gb|AAP98804.1| ATP-binding subunit of Clp protease [Chlamydophila pneumoniae TW-183] Length = 421 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +A+A+ N ++R + L + + N+LL+GPTG G Sbjct: 68 LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL +VEG++ + +Y Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYI 239 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLIAF 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + ++ QY EL E + L F ++++ A+ Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYMELFAEENVKLVFKKEALYAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 360 AKKAKQAKT-----GARALGMILENLLRDLMF 386 >gi|182438718|ref|YP_001826437.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779367|ref|ZP_08238632.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces cf. griseus XylebKG-1] gi|238688994|sp|B1VXA8|CLPX_STRGG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|178467234|dbj|BAG21754.1| putative ATP-dependent Clp protease ATP-binding subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659700|gb|EGE44546.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptomyces cf. griseus XylebKG-1] Length = 432 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRD--ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A D EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL+ + + ++ VVI + VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVRNNV 408 >gi|269302632|gb|ACZ32732.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila pneumoniae LPCoLN] Length = 421 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +A+A+ N ++R + L + + N+LL+GPTG G Sbjct: 68 LTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGKSNVLLLGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL +VEG++ + +Y Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIVEGTTANVPPKGGRKHPNQEYI 239 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADLSQKTRDHLLAKVETEDLIAF 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + ++ QY EL E + L F ++++ A+ Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFAEENVKLVFKKEALYAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 360 AKKAKQAKT-----GARALGMILENLLRDLMF 386 >gi|319946999|ref|ZP_08021233.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus australis ATCC 700641] gi|319747047|gb|EFV99306.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus australis ATCC 700641] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 5/115 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R + D+ L NIL+VGPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINFHENREDDNDVDLQKSNILMVGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 124 GKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGKNNKAIDESSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F +++++ +A A Sbjct: 299 ELIGRLPVLAALEQLTVDDLVRILKEPRNALVKQYQALLSFDDVELEFDDEALEEIASKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|299822630|ref|ZP_07054516.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM 20601] gi|299816159|gb|EFI83397.1| ATP-dependent Clp protease ATP-binding subunit [Listeria grayi DSM 20601] Length = 421 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI + L Y+IGQ+ AK+A+++A+ N ++R L ++ EL NI L+GPTG GKT Sbjct: 67 PQEIRNILSEYVIGQERAKKALSVAVYNHYKRVNGLGSEDEVELSKSNICLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 169 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQI 238 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++S+ P DLL P Sbjct: 239 DTSNILFIVGGAFDGIEQIVKNRMGEKVIGFGSDNQRLKEDETYLSKVVPEDLLRFGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L++ ILT+ ++ L+ QY ++++ + + L+F +++ A+A A Sbjct: 299 EFIGRLPVIATLEQLDEEALVSILTEPKNALVKQYVKMLELDDVTLEFEPEALKAIAKEA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 359 IARKT-----GARGLRSIIEKLMLEVMF 381 >gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] Length = 425 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R + ++ +D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLK-NSNHKDGVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ AR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETFARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 64/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADLL-- 313 +T ILFI GAF H P DL+ Sbjct: 240 DTSKILFICGGAFSGLEKVIEQRSHKGSGIGFGAQIKGEDDKATISEILMQVEPEDLIKY 299 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL++ ++ L Q+ L + EG+ L+FTED++ A+ Sbjct: 300 GLIPEFVGRLPVLSTLTELDEEALVQILSEPKNALTKQFAALFEMEGVELEFTEDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A A+ + GAR L++++E +L DI + S+ D+ + VVID V+ Sbjct: 360 AAKAMMRKT-----GARGLRSIVEGILLDIMYDLPSSDDVAK--VVIDESVVK 405 >gi|301312049|ref|ZP_07217971.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 20_3] gi|300830151|gb|EFK60799.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 20_3] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234 Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L + +GI L F E + + D Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S + K + + EY + Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++++ N ++R Q++ AD E+ NI++VG TG GK Sbjct: 63 PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174 >gi|257126077|ref|YP_003164191.1| ATP-dependent protease ATP-binding subunit ClpX [Leptotrichia buccalis C-1013-b] gi|257050016|gb|ACV39200.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia buccalis C-1013-b] Length = 409 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 P+EI ++LD YIIGQ+ K+ +++A+ N ++R +Q D EL N+LLVGPTG Sbjct: 63 LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKNVDNDVELQKSNVLLVGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ P + T TE GYVG +VE ++ L+ A Sbjct: 123 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 169 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 237 Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313 INT ILFI GAF P DL+ Sbjct: 238 INTKDILFIVGGAFEGLEAKVKDRVNEKRVGFGLETNNTKLDDLTLFENVLPEDLIKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ +++L+ QYK+ + E + L+F +D+I +A Sbjct: 298 IPELIGRLPVITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLEFEKDAITEIAQ 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 +A+ IGAR L++++E V+ D+ + S K V+I E V Sbjct: 358 LALKRK-----IGARGLRSIIESVMTDLMYEIPSKDNVKKVIITKEAV 400 >gi|182417594|ref|ZP_02948916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium butyricum 5521] gi|237668486|ref|ZP_04528470.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378549|gb|EDT76078.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium butyricum 5521] gi|237656834|gb|EEP54390.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium butyricum E4 str. BoNT E BL5262] Length = 429 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y++GQ AK+++A+A+ N ++R D D EL NILL+GPTG GKT Sbjct: 63 PNEIKEYLDSYVVGQDRAKKSLAVAVYNHYKRINTNKDDIDVELSKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 123 LLAQTLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVEKAER 174 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF-------------------------HVS---------RPADLL---- 313 NT +ILFI GAF H PADLL Sbjct: 235 NTSNILFICGGAFDGVDKIIEGRTRKSSMGFGADIQSKHEKDVGQLFKEIMPADLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SLNK ILT ++ L+ QYK+L + + + LDF + ++ A+A Sbjct: 295 IPEFVGRLPILVTLESLNKEALIEILTKPKNALVKQYKKLFELDDVKLDFEDGALTAIAA 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A++ + GAR L+ ++E ++ +I + D + V+I E ++ Sbjct: 355 EAISRQT-----GARGLRAIIEDIMNEIMYEIPCDNRITKVIITEETIK 398 >gi|69246840|ref|ZP_00604149.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO] gi|257878469|ref|ZP_05658122.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,230,933] gi|257882891|ref|ZP_05662544.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,502] gi|257889331|ref|ZP_05668984.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,410] gi|257894344|ref|ZP_05673997.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,408] gi|258616006|ref|ZP_05713776.1| ATP-dependent protease ATP-binding subunit ClpX [Enterococcus faecium DO] gi|260560058|ref|ZP_05832236.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium C68] gi|261207453|ref|ZP_05922139.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium TC 6] gi|289565864|ref|ZP_06446305.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium D344SRF] gi|293559815|ref|ZP_06676333.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1162] gi|294623406|ref|ZP_06702262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium U0317] gi|314939702|ref|ZP_07846926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133a04] gi|314942230|ref|ZP_07849082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133C] gi|314948863|ref|ZP_07852233.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0082] gi|314950805|ref|ZP_07853877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133A] gi|314993230|ref|ZP_07858609.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133B] gi|314995227|ref|ZP_07860340.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133a01] gi|68195073|gb|EAN09535.1| ClpX, ATPase regulatory subunit [Enterococcus faecium DO] gi|257812697|gb|EEV41455.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,230,933] gi|257818549|gb|EEV45877.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,502] gi|257825691|gb|EEV52317.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,410] gi|257830723|gb|EEV57330.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,408] gi|260073893|gb|EEW62217.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium C68] gi|260078344|gb|EEW66049.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium TC 6] gi|289162324|gb|EFD10183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium D344SRF] gi|291597172|gb|EFF28367.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium U0317] gi|291606234|gb|EFF35650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1162] gi|313590557|gb|EFR69402.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133a01] gi|313592285|gb|EFR71130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133B] gi|313597020|gb|EFR75865.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133A] gi|313599002|gb|EFR77847.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133C] gi|313641037|gb|EFS05617.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0133a04] gi|313644736|gb|EFS09316.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium TX0082] Length = 416 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 P EI+ L+ Y+IGQ AKR++A+A+ N ++R QQ + D EL NI L+GPTG G Sbjct: 64 PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF H+ P DLL Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L D ILT+ ++ L+ QY++L+ + L+F +++ A+A Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNTELEFEPEALRAIAKK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E ++ D+ F Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380 >gi|262383889|ref|ZP_06077025.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_33B] gi|262294787|gb|EEY82719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 2_1_33B] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234 Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLGTATVDRNNLLKYITPTDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L + +GI L F E + + D Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S + K + + EY + Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++++ N ++R Q++ AD E+ NI++VG TG GK Sbjct: 63 PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174 >gi|239941126|ref|ZP_04693063.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces roseosporus NRRL 15998] gi|239987604|ref|ZP_04708268.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces roseosporus NRRL 11379] gi|291444567|ref|ZP_06583957.1| ATP-dependent protease ATP-binding subunit [Streptomyces roseosporus NRRL 15998] gi|291347514|gb|EFE74418.1| ATP-dependent protease ATP-binding subunit [Streptomyces roseosporus NRRL 15998] Length = 432 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRD--ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A D EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEPAKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVLTSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ L T GAR L+ +ME VL+ + + ++ VVI + VR Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLQSVMYEVPSRKDVARVVITPDVVR 405 >gi|298491693|ref|YP_003721870.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc azollae' 0708] gi|298233611|gb|ADI64747.1| ATP-dependent Clp protease, ATP-binding subunit ClpX ['Nostoc azollae' 0708] Length = 446 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 11/128 (8%) Query: 3 LTFN--FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---------PADLRDEL 51 ++FN PREI LD ++IGQ +AK+ +++A+ N ++R + AD E+ Sbjct: 74 ISFNQIPKPREIKKYLDEHVIGQDEAKKVLSVAVYNHYKRLAVIQSKGNGKGGADDAVEI 133 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA Sbjct: 134 QKSNILLMGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVAD 193 Query: 112 NIVRESRR 119 V E++R Sbjct: 194 LDVEEAQR 201 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ V + G I Sbjct: 202 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTTANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311 +T +ILFI GAF R AD Sbjct: 262 DTSNILFICGGAFVGLEKVVDQRVGKKSIGFVQSGEGQSKEKRAADTLRHLEPDDLVKFG 321 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR P+ + L++ ILT S L+ QY++L+K + + LDF +++ A+A Sbjct: 322 MIPEFIGRMPMVAVVDPLDEEALMAILTQPRSALVKQYQKLLKMDNVQLDFKPEALRAIA 381 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 382 QEAHRRKT-----GARALRGIVEELMLDVMY 407 >gi|150008999|ref|YP_001303742.1| ATP-dependent protease ATP-binding subunit ClpX [Parabacteroides distasonis ATCC 8503] gi|149937423|gb|ABR44120.1| ATP-dependent Clp protease ATP-binding subunit [Parabacteroides distasonis ATCC 8503] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234 Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L + +GI L F E + + D Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFEMDGIKLTFDEKVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S + K + + EY + Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++++ N ++R Q++ AD E+ NI++VG TG GK Sbjct: 63 PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174 >gi|313675246|ref|YP_004053242.1| ATP-dependent clp protease ATP-binding subunit clpx [Marivirga tractuosa DSM 4126] gi|312941944|gb|ADR21134.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Marivirga tractuosa DSM 4126] Length = 412 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 58/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ +L L+EG+SV+ K ++ Sbjct: 175 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQAMLKLLEGTSVNVPPQGGRKHPDQKMINV 234 Query: 292 NTDHILFIASGAFH-VSRP--------------AD------------------------L 312 +T++ILFI GAF +SR AD L Sbjct: 235 DTENILFICGGAFDGISRSIASRLNTTPLGFAKADTKEEEIDKENLLQYITAQDLKNFGL 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV HL L+K +LILT+ ++ L+ QY +L EGI L + ++D + Sbjct: 295 IPELIGRLPVLTHLDPLSKDTLKLILTEPKNALVKQYNKLFDMEGINLVIEDSALDYIVQ 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEY 418 AV +GAR L+++ E ++ D F T ++ID +Y Sbjct: 355 KAVEFK-----LGARGLRSICEVIMTDAMFEFDGESSGTELIIDEKY 396 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPT 62 FN P E+ + LD+Y++GQ +AK+ +++A+ N ++R + D + K NI++VG T Sbjct: 58 FNLIRPIEMKTHLDQYVVGQDEAKKVMSVAVYNHYKRLMQKSTKDDVTIEKSNIIMVGET 117 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 118 GTGKTYLAKTLARILQVPFCIADATVLTEAGYVGEDVESILTRLLQSADYNVEAAQR 174 >gi|304437033|ref|ZP_07396996.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369984|gb|EFM23646.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 421 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ +AK+++++A+ N ++R + EL N+L++GPTG GK Sbjct: 64 PKEIRRILDQYVIGQDEAKKSLSVAVYNHYKRIHAGQGKNEDVELRKSNVLMIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAQR 176 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKIARKSENPSITRDVSGEGVQQGLLKILEGTTASVPPQGGRKHPQQELLQI 236 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T +ILFI G+F +S+ P DL+ Sbjct: 237 DTTNILFICGGSFDGLEEIIESRLGKKQMGFGAEVRSKRRVTVGASLSKIIPEDLMKNGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L SL++ ILT+ ++ L+ Q+++L++ +G+ L F ED++ +A Sbjct: 297 IPEFIGRLPVVVTLNSLDEEALVRILTEPKNALVKQFQKLLELDGVRLTFEEDALHLIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 A+ + GAR L+ ++E ++ ++ + + T Sbjct: 357 EALTHKT-----GARGLRAIVEGIMRNVMYEVPSIHGVTAC 392 >gi|311069315|ref|YP_003974238.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus atrophaeus 1942] gi|310869832|gb|ADP33307.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus atrophaeus 1942] Length = 420 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ+ AK+++A+A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 64 PQEIREILNEYVIGQEQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QYK++++ + + L+F ED++ +A Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEEDALAEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F + D EK V V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409 >gi|126173839|ref|YP_001049988.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS155] gi|160874745|ref|YP_001554061.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS195] gi|217973909|ref|YP_002358660.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS223] gi|304409712|ref|ZP_07391332.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS183] gi|307304068|ref|ZP_07583821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica BA175] gi|166215201|sp|A3D306|CLPX_SHEB5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044150|sp|A9KWH8|CLPX_SHEB9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763862|sp|B8E5E8|CLPX_SHEB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|125997044|gb|ABN61119.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS155] gi|160860267|gb|ABX48801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS195] gi|217499044|gb|ACK47237.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS223] gi|304352230|gb|EFM16628.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS183] gi|306912966|gb|EFN43389.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica BA175] gi|315266987|gb|ADT93840.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS678] Length = 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLK-NASPKDGIELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKEKATISETLTQVEPGDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386 >gi|300871407|ref|YP_003786280.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit [Brachyspira pilosicoli 95/1000] gi|40794667|gb|AAR90874.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit [Brachyspira pilosicoli] gi|300689108|gb|ADK31779.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit [Brachyspira pilosicoli 95/1000] Length = 594 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIVSEL++ +IGQ DAK+A+++ R D+ NIL++GPTGVGK Sbjct: 229 LTPKEIVSELNKTVIGQDDAKKALSVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 285 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T + + LA + G PF + +VT TE GYVG +VE ++ +L A Sbjct: 286 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNLYKKA 329 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 58/213 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290 +GIVFLDE DKI D+ S + VQ LL ++ G + ++G Sbjct: 338 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 397 Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT +ILFI GAF + D Sbjct: 398 VMNTKNILFIFGGAFVGLEDIIKMRLKGESSLGFGSNAVLNKLQKNKILSQVDVKDVEKY 457 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR P+ V L L K + + IL T+ + I++Y + K+ G L T+D+I+ + Sbjct: 458 GMIPEFIGRIPIIVTLNELTKDNLKDILLKTKESPIIKYVDFFKSIGKKLILTDDAINYI 517 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 D A +N +GAR L++++E + +I F+ Sbjct: 518 VDKASTMN-----MGARSLKSIVETAMVNILFN 545 >gi|46447011|ref|YP_008376.1| ATP-dependent protease ATP-binding subunit [Candidatus Protochlamydia amoebophila UWE25] gi|61211514|sp|Q6MBE8|CLPX_PARUW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46400652|emb|CAF24101.1| probable ATP-dependent Clp protease ATP-binding subunit X [Candidatus Protochlamydia amoebophila UWE25] Length = 413 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%) Query: 4 TFNFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILL 58 T+ F P+EI +LD YIIGQ++AK+ +++ + N ++R + D E N+LL Sbjct: 53 TYEFKILKPKEIKEKLDEYIIGQENAKKTISVGVYNHYKRIRSKNKEADGIEFSKSNVLL 112 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT I++ LA + PF + T TE GYVG +VE II L+ A Sbjct: 113 FGPTGSGKTLIAKTLASILDVPFTIADATTLTEAGYVGEDVENIILRLLQAA 164 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233 Query: 292 NTDHILFIASGAF---------HVSR--------------------------PADLL--- 313 NT++ILFI GAF + R P DL+ Sbjct: 234 NTENILFIVGGAFVNLEKIIAKRLGRNTIGFDGSNREVVDPTQKSLLLSKVEPEDLIQFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GRF + L D ILT+ ++ I Q+ + + EG+ L FTED++ A+A Sbjct: 294 MIPEFVGRFNSIANCNELQLPDLINILTEPKNAFIKQFIAMFEAEGVKLQFTEDALAAIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E ++ ++ + SD ++I+ E V Sbjct: 354 QQAIEAGT-----GARALRLILENLMRELMYEIPSDETISEILIEKETV 397 >gi|15827775|ref|NP_302038.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium leprae TN] gi|221230252|ref|YP_002503668.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium leprae Br4923] gi|21263482|sp|Q9CBY6|CLPX_MYCLE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763857|sp|B8ZRP1|CLPX_MYCLB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|13093327|emb|CAC30427.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium leprae] gi|219933359|emb|CAR71571.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium leprae Br4923] Length = 426 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSKREPVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLDKIIYERIGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+ IL++ ++ L+ QY L + +G+ L+FT D+++A+AD Sbjct: 301 IPEFIGRLPVIASVINLDMESLVKILSEPKNALVKQYTWLFEMDGVELEFTNDALEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|309807958|ref|ZP_07701886.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 01V1-a] gi|308168809|gb|EFO70899.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 01V1-a] Length = 433 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 69 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173 >gi|257456333|ref|ZP_05621530.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema vincentii ATCC 35580] gi|257446419|gb|EEV21465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema vincentii ATCC 35580] Length = 414 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPK-NILLVGPTGVG 65 +P E+ + LD Y+IGQ+ AKR +++A+ N ++R PAD ++ K N+LL+GPTG G Sbjct: 62 TPMELKAYLDEYVIGQEKAKRVLSVAVYNHYKRIMHPPADRNAVVIEKSNVLLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++R LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLARTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + I VS EGVQ+ LL +VEG+ SV + G I Sbjct: 176 GIIFIDEIDKIARKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPNQDMLKI 235 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF V+ P DL Sbjct: 236 DTSNILFICGGAFVGLDTIIQTRVAENPMGFGADVRSAKEKNLQELYDKLIPDDLVKFGI 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ V L L +D R IL + ++ +I Q++E K + + L F + ++DA++ Sbjct: 296 IPELIGRLPISVPLSDLKLADLRRILVEPKNAIIKQFQESFKLDNVKLTFDDAALDAISQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A++ N+ GAR L++++E+++ D F A ++ Sbjct: 356 QALDQNT-----GARGLRSIVEKLMLDAMFEAPSMK 386 >gi|154249524|ref|YP_001410349.1| ATP-dependent protease ATP-binding subunit ClpX [Fervidobacterium nodosum Rt17-B1] gi|154153460|gb|ABS60692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fervidobacterium nodosum Rt17-B1] Length = 410 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I ELD+Y+IGQ+ K+ +++A+ N ++R D D E+ NI+L+GPTG GK Sbjct: 61 TPSKIKQELDKYVIGQERVKKILSVAVYNHYKRVFFGKDTNDVEIEKSNIILIGPTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R LA++ PF + T TE GYVG +VE ++ L++V Sbjct: 121 TLMARILAKILDVPFAIADATPLTEAGYVGEDVENVVLRLLEVT 164 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 109/231 (47%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 YGI+++DE DKI + I VS EGVQ+ LL +VEG+ +V + G Sbjct: 172 QYGIIYIDEIDKIARKSPNPSITRDVSGEGVQKGLLKIVEGTIANVPPQGGRKHPYQEFI 231 Query: 290 SINTDHILFIASGAF-----------------------------------HVSRPADL-- 312 ++T +ILFI GAF HV+ P DL Sbjct: 232 KVDTTNILFIVGGAFDGLDEIIKRRIEGSTIGFNAPVKSKEQMRLGEILQHVT-PDDLVQ 290 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV L L+ D IL + ++ ++ QYK+L + +G+ L+ E ++ A Sbjct: 291 YGLMPEFVGRFPVIGTLDDLSVDDLVRILKEPKNAVLKQYKKLFEIDGVTLEIEEQALYA 350 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A+ + GAR L++V E V+ DI F DL+ + V+I E V Sbjct: 351 IAKEALRRGT-----GARALKSVFEEVMIDIMFDIPDLKAVEKVIITEECV 396 >gi|227551678|ref|ZP_03981727.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium TX1330] gi|257884402|ref|ZP_05664055.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,501] gi|257887186|ref|ZP_05666839.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,141,733] gi|257895722|ref|ZP_05675375.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium Com12] gi|257898293|ref|ZP_05677946.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium Com15] gi|293377669|ref|ZP_06623858.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium PC4.1] gi|293557138|ref|ZP_06675692.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1039] gi|293571862|ref|ZP_06682878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E980] gi|294614149|ref|ZP_06694070.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1636] gi|227179241|gb|EEI60213.1| ATP-dependent protease ATP-binding subunit [Enterococcus faecium TX1330] gi|257820240|gb|EEV47388.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,231,501] gi|257823240|gb|EEV50172.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium 1,141,733] gi|257832287|gb|EEV58708.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium Com12] gi|257836205|gb|EEV61279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus faecium Com15] gi|291592999|gb|EFF24587.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1636] gi|291600707|gb|EFF31005.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1039] gi|291608116|gb|EFF37422.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E980] gi|292643669|gb|EFF61790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium PC4.1] Length = 416 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 P EI+ L+ Y+IGQ AKR++A+A+ N ++R QQ + D EL NI L+GPTG G Sbjct: 64 PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF H+ P DLL Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L D ILT+ ++ L+ QY++L+ + L+F +++ A+A Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDDTELEFEPEALRAIAKK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E ++ D+ F Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380 >gi|312871447|ref|ZP_07731542.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 3008A-a] gi|312872315|ref|ZP_07732385.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2062A-h1] gi|325912860|ref|ZP_08175238.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners UPII 60-B] gi|311092138|gb|EFQ50512.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2062A-h1] gi|311093100|gb|EFQ51449.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 3008A-a] gi|325477853|gb|EGC80987.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners UPII 60-B] Length = 433 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 69 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173 >gi|325847170|ref|ZP_08169969.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480950|gb|EGC83996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 399 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 PREI LD+Y+I Q+ AK+ +++++ N ++R D D EL NIL++GPTG GK Sbjct: 59 PREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE II LV A Sbjct: 119 TLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 162 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 53/206 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 172 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 231 Query: 292 NTDHILFIASGAF--------------------------HVS----RPADLL-----PEI 316 +T +ILFI GAF +S R DLL PE Sbjct: 232 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLADVRTEDLLKYGLIPEF 291 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L+ L+ IL + +++L+ QY++L + +G+ L F ++++ +A A Sbjct: 292 IGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDEAVREIAKKAFK 351 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+T++E +L D+ + Sbjct: 352 QET-----GARGLRTILEDLLLDVMY 372 >gi|293568082|ref|ZP_06679419.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1071] gi|294617407|ref|ZP_06697041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1679] gi|291589164|gb|EFF20975.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1071] gi|291596313|gb|EFF27572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Enterococcus faecium E1679] Length = 416 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 P EI+ L+ Y+IGQ AKR++A+A+ N ++R QQ + D EL NI L+GPTG G Sbjct: 64 PLEILEVLNNYVIGQDRAKRSLAVAVYNHYKRVNQQAQENTDDVELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSA 168 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF H+ P DLL Sbjct: 238 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGTQNQKLSEDESVMQHII-PEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L D ILT+ ++ L+ QY++L+ + L+F +++ A+A Sbjct: 297 PEFIGRLPVMAALEKLTTDDLVRILTEPKNALVKQYQKLLSLDNTELEFEPEALRAIAKK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E ++ D+ F Sbjct: 357 AIERNT-----GARGLRSIIEEIMMDVMF 380 >gi|86157972|ref|YP_464757.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] gi|85774483|gb|ABC81320.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-C] Length = 427 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54 +P EI S LD Y++GQ AK+ +++A+ N ++R Q P R EL Sbjct: 63 TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPQRPGQARAAQDDVELQKS 122 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILLVGPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ A Sbjct: 123 NILLVGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 178 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 69/216 (31%) Query: 245 GIVFLDEFDKIV--------ARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286 GIV++DE DKI RD G EGVQ+ LL ++EG+ + Sbjct: 188 GIVYIDEIDKIARKGDTPSPTRDVGG------EGVQQALLKIIEGTRANVTPRGGKKYNQ 241 Query: 287 -KYGSINTDHILFIASGAF----HVSR------------------------------PAD 311 +Y ++T ++LFI GAF V R P D Sbjct: 242 QEYIQVDTSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGD 301 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR P+ L L + D ILT ++ L QY +L E + L FT++S Sbjct: 302 LVRFGMIPEFVGRLPIVATLSDLGEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKES 361 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A A A+ S GAR L+ ++E+ + DI + Sbjct: 362 LRATAREAMRRKS-----GARGLRAILEQAMLDIMY 392 >gi|212696597|ref|ZP_03304725.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM 7454] gi|212676328|gb|EEB35935.1| hypothetical protein ANHYDRO_01137 [Anaerococcus hydrogenalis DSM 7454] Length = 402 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 PREI LD+Y+I Q+ AK+ +++++ N ++R D D EL NIL++GPTG GK Sbjct: 62 PREIKEYLDQYVIQQEMAKKTLSVSVYNHYKRINSNYDKDDGVELQKSNILMLGPTGSGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE II LV A Sbjct: 122 TLLAQTLAKKLNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 165 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 53/206 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPSQEYIQV 234 Query: 292 NTDHILFIASGAF--------------------------HVS----RPADLL-----PEI 316 +T +ILFI GAF +S R DLL PE Sbjct: 235 DTTNILFIVGGAFDGIKDIIKQRTNKKSIGFGSDDSENKEISLADVRTEDLLKYGLIPEF 294 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR P+ V L+ L+ IL + +++L+ QY++L + +G+ L F ++++ +A A Sbjct: 295 IGRVPIVVSLEDLDVDSLVKILKEPKNSLLKQYQKLFELDGVKLTFEDEAVREIAKKAFK 354 Query: 377 LNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+T++E +L D+ + Sbjct: 355 QET-----GARGLRTILEDLLLDVMY 375 >gi|114321436|ref|YP_743119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola ehrlichii MLHE-1] gi|122311053|sp|Q0A6A8|CLPX_ALHEH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|114227830|gb|ABI57629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkalilimnicola ehrlichii MLHE-1] Length = 425 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 5/102 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD +++GQ+ AK+ +++A+ N ++R L A R EL NILL+GPTG G Sbjct: 68 PHEINQVLDEFVVGQEHAKKVLSVAVYNHYKR--LEAGSRKDEVELSKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 126 KTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 167 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 60/227 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DK+ + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 180 GIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T ILFI GAF P DL Sbjct: 240 DTGGILFICGGAFAGLDKVIQDRSEKGGIGFSAEIKSKDEKRSVGETLQDVEPEDLVKYG 299 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ IL+ ++ L+ QY++L + EG+ L+F ED++ A+A Sbjct: 300 LIPEFVGRLPVVATLEELDEQALVEILSAPKNALVKQYQKLFEMEGVELEFREDALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 A++ + GAR L+T++E VL D + ++ EK VV DA Sbjct: 360 RKAMDRKT-----GARGLRTILEHVLLDTMYDLPSMENVEKVVVDDA 401 >gi|116670949|ref|YP_831882.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter sp. FB24] gi|166214753|sp|A0JXL2|CLPX_ARTS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116611058|gb|ABK03782.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter sp. FB24] Length = 429 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56 PREI L Y+IGQ+ AKR++A+A+ N ++R Q + E+ NI Sbjct: 64 PREIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSNI 123 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 177 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 62/229 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 187 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 246 Query: 292 NTDHILFIASGAFHV------SR--------------------------PADLL-----P 314 +T ++LFI +GAF SR P DLL P Sbjct: 247 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGAPLNEVKNNSDSYGEVMPEDLLKFGLIP 306 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + +L++ IL+ ++ L+ QY+++ + +G+ L F ++++D +AD A Sbjct: 307 EFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQLDGVELLFDDEALDVIADQA 366 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419 + + GAR L+ +ME VL + F DL + +VVI A+ V Sbjct: 367 LERGT-----GARGLRAIMEEVLLPVMF---DLPSRDDIASVVITADVV 407 >gi|259500684|ref|ZP_05743586.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335] gi|259168068|gb|EEW52563.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335] Length = 433 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P +I LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 69 PIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173 >gi|257468339|ref|ZP_05632433.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium ulcerans ATCC 49185] gi|317062613|ref|ZP_07927098.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium ulcerans ATCC 49185] gi|313688289|gb|EFS25124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium ulcerans ATCC 49185] Length = 416 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDELMPKNILLVGP 61 +P+EI +LD Y+IGQ + K+ +++A+ N ++R Q D EL N+LL+GP Sbjct: 62 LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILDKNTQENEDNNVELQKSNVLLIGP 121 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 180 GIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKHPNQELIEI 239 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T +ILFI GAF SR P DL Sbjct: 240 DTANILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETDERVGEVFIKVLPEDLVRQGI 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV LK L++ ILT+ ++ ++ QYK+L EG+ L+FT +++ +A Sbjct: 300 IPELVGRLPVITTLKDLDEKALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAV 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ IGAR L+ ++E+ + ++ + Sbjct: 360 LALERK-----IGARGLRAIIEQTMLELMY 384 >gi|225868471|ref|YP_002744419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus equi subsp. zooepidemicus] gi|259491269|sp|C0MEW5|CLPX_STRS7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|225701747|emb|CAW99121.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus equi subsp. zooepidemicus] Length = 409 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y+IGQ+ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 55/215 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN D ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + + GAR L++++E + DI F +E Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEE 387 >gi|153000123|ref|YP_001365804.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella baltica OS185] gi|166215202|sp|A6WLQ2|CLPX_SHEB8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|151364741|gb|ABS07741.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella baltica OS185] Length = 426 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R + A +D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLK-NASPKDGIELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKEKATISETLTQVEPGDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386 >gi|309807089|ref|ZP_07701068.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 03V1-b] gi|309809314|ref|ZP_07703183.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners SPIN 2503V10-D] gi|325912021|ref|ZP_08174423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners UPII 143-D] gi|308166519|gb|EFO68719.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 03V1-b] gi|308170427|gb|EFO72451.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners SPIN 2503V10-D] gi|325476206|gb|EGC79370.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners UPII 143-D] Length = 433 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSSDALNAIATMA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 69 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173 >gi|260889842|ref|ZP_05901105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia hofstadii F0254] gi|260860448|gb|EEX74948.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia hofstadii F0254] Length = 391 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 P+EI ++LD YIIGQ+ K+ +++A+ N ++R +Q D EL N+LLVGPTG Sbjct: 45 LKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRIMHKQKSIDNDVELQKSNVLLVGPTG 104 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ P + T TE GYVG +VE ++ L+ A Sbjct: 105 SGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 151 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 57/228 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 160 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 219 Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313 INT ILFI GAF P DL+ Sbjct: 220 INTKDILFIVGGAFEGLEAKVKDRVNEKRVGFGLETNNTKLDDLTLFENVLPEDLIKFGL 279 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV L L++ ILT+ +++L+ QYK+ + E + L+F +D+I +A Sbjct: 280 IPELIGRLPVITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLEFEKDAITEIAQ 339 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 +A+ IGAR L++++E V+ D+ + S K V+I E V Sbjct: 340 LALKRK-----IGARGLRSIIESVMTDLMYEIPSKNNVKKVIITKEAV 382 >gi|225870476|ref|YP_002746423.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus equi subsp. equi 4047] gi|254763864|sp|C0M9R7|CLPX_STRE4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|225699880|emb|CAW93774.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus equi subsp. equi 4047] Length = 409 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y+IGQ+ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLEILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 55/215 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMVQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN D ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + + GAR L++++E + DI F +E Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEE 387 >gi|262369922|ref|ZP_06063249.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046] gi|262314961|gb|EEY96001.1| ATP-dependent protease Clp [Acinetobacter johnsonii SH046] Length = 438 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRDELMPKNILLVGPTG 63 P EI + LD+Y+IGQ AK+ +++A+ N ++R + D E+ NILLVGPTG Sbjct: 65 PHEIRAALDQYVIGQDVAKKTLSVAVYNHYKRLKATHGGHKHDDAVEIAKSNILLVGPTG 124 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +ARL PF + T TE GYVG +VE I++ L+ A Sbjct: 125 SGKTLLAQTMARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 171 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T +ILFI GAF V + + Sbjct: 241 DTSNILFICGGAFSGLEKIVQQRQEKGGIGFTAEVKKKDEGKKLSDLFRQVEATDLVKFG 300 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 301 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQHLFDMENVDLVFEDSALRAVA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A++ N+ GAR L++++E L Sbjct: 361 KKALDRNT-----GARGLRSILENTL 381 >gi|53802552|ref|YP_112778.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] gi|61211760|sp|Q60C67|CLPX1_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1 gi|53756313|gb|AAU90604.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] Length = 422 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+E+ + LD+Y+IGQ AKR +++A+ N ++R + D EL N+LL+GPTG GKT Sbjct: 67 PKEMKAILDQYVIGQDKAKRILSVAVYNHYKRLKARTFRNDVELAKSNVLLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 LLAETLARVLDVPFTIADATTLTEAGYVGEDVENIIQKLL 166 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 63/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 179 GIVYIDEIDKISRKADSPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQV 238 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311 NT +ILFI GAF + A+ Sbjct: 239 NTANILFICGGAFAGLDKTIRSRSERSGIGFSAEVKSKEENTNVGEILAGVEAEDLIRYG 298 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L+++ IL + ++ L+ QY L + EG L+ +++ A+A Sbjct: 299 LIPEFIGRLPVVATLEELDEAALVRILIEPKNALVKQYARLFEMEGCELEILPEALGAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ + GAR L+T++E L D + SA D+ + VV+DA+ +R Sbjct: 359 RRAMERKT-----GARGLRTIIEHALLDTMYELPSAEDVGK--VVVDAKVIR 403 >gi|313891580|ref|ZP_07825190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister microaerophilus UPII 345-E] gi|313120039|gb|EFR43221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister microaerophilus UPII 345-E] Length = 411 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ILFI GAF ++ P DLL Sbjct: 238 DTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT ++ LI QYK+L+K + + L+F E +I A+A Sbjct: 298 IPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E++++ + + ++++ I E V +H Sbjct: 358 KAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVH 402 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI +D+Y+I Q++AK A+A+A+ N ++R + D + EL NI+++GPTG Sbjct: 63 TPVEIKKYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAA 168 >gi|297566269|ref|YP_003685241.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus silvanus DSM 9946] gi|296850718|gb|ADH63733.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus silvanus DSM 9946] Length = 399 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI S LD+Y+IGQ+ KR +++A+ N ++R P E+ NILL+GPTG GKT Sbjct: 61 PAEIKSFLDQYVIGQEVPKRVLSVAVYNHYKRLMHP---EAEIQKSNILLIGPTGTGKTL 117 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR+ PF + T TE GYVG +VE +I L+ A Sbjct: 118 MAETLARMLDVPFAIADATTLTEAGYVGEDVENVILRLLQAA 159 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 54/216 (25%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GI+++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 169 GIIYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPHQEFVQ 227 Query: 291 INTDHILFIASGAFH-VSR--------------------------PADL-----LPEIQG 318 +NT +ILFI GAF + R P DL +PE G Sbjct: 228 VNTKNILFILGGAFEGLDRILKARVDQHPIGFTKAKFNPEKLEVIPEDLVRYGLIPEFVG 287 Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R PV V L +L++ ILT+ ++ L+ QY+ELM+ EGI L FT + +A A+ Sbjct: 288 RVPVVVGLDALDEESLVRILTEPKNALVRQYQELMRMEGIELKFTPAVLREVARRALKRG 347 Query: 379 STVGDIGARRLQTVMERVLEDISFSA--SDLQEKTV 412 + GAR L+ V+E+ + D+ + A S + E TV Sbjct: 348 T-----GARGLRAVIEKAMVDLMYEAPGSGVWEITV 378 >gi|195978196|ref|YP_002123440.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689818|sp|B4U360|CLPX_STREM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|195974901|gb|ACG62427.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 409 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y+IGQ+ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDILNQYVIGQERAKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN D ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLNTEDLIRILTEPRNALVKQYQALLSYDGVELEFEKSALEAIAGRA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E + DI F +E T V Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMFEVPSQEEVTKV 391 >gi|170781896|ref|YP_001710228.1| ATP-dependent protease ATP-binding subunit ClpX [Clavibacter michiganensis subsp. sepedonicus] gi|189082488|sp|B0RAS4|CLPX_CLAMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|169156464|emb|CAQ01612.1| ATP dependent Clp Protease ATP binding subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 426 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-----PADLRD---ELMPKNILLVG 60 P+EI LD Y+IGQ+ AKRA+++A+ N ++R + PA E+ NILL+G Sbjct: 66 PKEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAKTVGDEIEIAKSNILLIG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 185 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314 +T ++LFI +GAF +S+ P DL +P Sbjct: 245 DTTNVLFIVAGAFAGLEDIISQRAGKKGIGFGAPLHRKDLNADVFGEVLPEDLHKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT + L+ QY+ + + +G+ L+F + +++++AD+A Sbjct: 305 EFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFELDGVELEFEQGALESIADLA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 V L T GAR L+ ++E VL I F SD + VVI E V Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMFDIPSDDEVGRVVITRESV 405 >gi|315653481|ref|ZP_07906402.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners ATCC 55195] gi|315489172|gb|EFU78813.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus iners ATCC 55195] Length = 433 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 183 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 242 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 243 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 303 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLSLDGVELEFSADALNAIATMA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 363 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 402 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 69 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 173 >gi|309804151|ref|ZP_07698229.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 11V1-d] gi|312875511|ref|ZP_07735514.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2053A-b] gi|308163734|gb|EFO66003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 11V1-d] gi|311089022|gb|EFQ47463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LEAF 2053A-b] Length = 429 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 65 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169 >gi|294629344|ref|ZP_06707904.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. e14] gi|292832677|gb|EFF91026.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces sp. e14] Length = 428 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 PREI LD Y++GQ+ AK+++++A+ N ++R Q + EL NILL+GP Sbjct: 64 PREIYEFLDGYVVGQEAAKKSLSVAVYNHYKRVQAGENGGGQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFHVSR----------------------------------PADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIEGRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VV+ A+ V ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVVTADVVHSNV 408 >gi|255019391|ref|ZP_05291500.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidithiobacillus caldus ATCC 51756] gi|254971163|gb|EET28616.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Acidithiobacillus caldus ATCC 51756] Length = 427 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD---ELMPKNILLVGPTGV 64 P EI LD Y+IGQ AK+ +++A+ N ++R + RD EL NILL+GPTG Sbjct: 67 PMEIRKTLDEYVIGQDAAKKVLSVAVYNHYKRLEHGGKGGRDNDVELDKSNILLIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 127 GKTLLAQTLARLLNVPFAMADATTLTEAGYVGEDVENIIQKLL 169 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 58/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312 +T HILFI GAF + R P DL Sbjct: 242 DTRHILFICGGAFAGLEKAVASRVEKGGMGFNAQIKRTDKQNSSNLMMENLEPEDLVRYG 301 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++L+ QY++L EG+ L+F +++ A+A Sbjct: 302 LIPEFVGRLPVIALLEELDEDALVSILTEPRNSLVKQYQKLFALEGVTLEFRPEALRAIA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L++++E++L D + L Sbjct: 362 KKALTRKT-----GARGLRSILEQILLDSMYELPSL 392 >gi|219849053|ref|YP_002463486.1| ATP-dependent protease ATP-binding subunit ClpX [Chloroflexus aggregans DSM 9485] gi|219543312|gb|ACL25050.1| Sigma 54 interacting domain protein [Chloroflexus aggregans DSM 9485] Length = 429 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR++ LD+Y+IGQ AK A+A+A+ N ++R + A + D E+ NILL+GPTG GK Sbjct: 72 TPRKLRERLDQYVIGQDRAKVALAVAVYNHYKRVRAGARIDDVEISKSNILLIGPTGSGK 131 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +AR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 132 TLLAQTMARILDVPFAIADATALTEAGYVGEDVENILLRLIQAA 175 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG +Y Sbjct: 185 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYIPF 244 Query: 292 NTDHILFIASGAFH----------------------VSR------------PADLL---- 313 +T ++LFI GAF VS P DL+ Sbjct: 245 DTTNVLFICGGAFEGITKIIAKRLRGKQLIGFGTNPVSPLEEEGALLAQIIPDDLMHFGF 304 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L+ L++ ILT+ + +I QY++L + L+FT DS++A+ D Sbjct: 305 IPEFVGRLPVIVALEPLSREAMLRILTEPRNAIIKQYQKLFALDHCELEFTPDSLEAIVD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A++ + GAR L++++E VL D+ F + +++AE ++ Sbjct: 365 RAMSART-----GARALRSIVEEVLLDVMFELPSQEHIGRCIVNAEVIQ 408 >gi|111115441|ref|YP_710059.1| ATP-dependent protease ATP-binding subunit ClpX [Borrelia afzelii PKo] gi|216263331|ref|ZP_03435326.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia afzelii ACA-1] gi|110890715|gb|ABH01883.1| ATP-dependent Clp protease, subunit X [Borrelia afzelii PKo] gi|215980175|gb|EEC20996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia afzelii ACA-1] Length = 430 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 177 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTIANVPPRGGRKHPYEDTIEI 236 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 237 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIRDDTSLKYLEMEDLIKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ L+K D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 297 EFVGRLPVHSYLEKLSKEDLIKILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 357 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKTKKVIVTKESV 397 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD +++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 63 TPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTLLAKTLAAEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 167 >gi|62185491|ref|YP_220276.1| ATP-dependent protease ATP-binding subunit [Chlamydophila abortus S26/3] gi|329943258|ref|ZP_08292032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila psittaci Cal10] gi|332287837|ref|YP_004422738.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila psittaci 6BC] gi|81312361|sp|Q5L4W6|CLPX_CHLAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|62148558|emb|CAH64329.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila abortus S26/3] gi|313848409|emb|CBY17413.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Chlamydophila psittaci RD1] gi|325506574|gb|ADZ18212.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila psittaci 6BC] gi|328814805|gb|EGF84795.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila psittaci Cal10] gi|328915098|gb|AEB55931.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila psittaci 6BC] Length = 421 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D+Y++GQ+ AK+ +A+A+ N ++R + L + N+LL+GPTG G Sbjct: 68 LTPKEIKKHIDKYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG++ + +Y Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLIAF 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + ++ QY EL E + L F ++++ A+ Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYIELFSEENVKLIFEKEALYAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386 >gi|312885608|ref|ZP_07745244.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mucilaginibacter paludis DSM 18603] gi|311301920|gb|EFQ78953.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mucilaginibacter paludis DSM 18603] Length = 412 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ K ++ Sbjct: 176 GIVYIDEVDKIARKSDNPSITRDVSGEGVQQALLKILEGTMVNVPPQGGRKHPDQKMITV 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 236 NTSNILFICGGAFDGIEKKIANRLRTQTVGYKFKNEDHEVDMKNLYKYITPQDLKAFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L++ ILT+ +++L+ QYK+L + EGI LDF +++ + D Sbjct: 296 PELIGRLPVLTYLNPLDREALANILTEPKNSLLKQYKKLFEYEGISLDFEPETLSFIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ +GAR L+++ E ++ D F S D++ V +D Sbjct: 356 AMEFK-----LGARGLRSICEAIMIDAMFEFPSKKDVKSLVVTLD 395 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI + LD+Y+IGQ DAK+ +++A+ N ++R D + E+ NI++VG TG G Sbjct: 62 LKPFEIKAHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVDKDEVEIEKSNIIMVGETGTG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166 >gi|309805711|ref|ZP_07699751.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 09V1-c] gi|329921321|ref|ZP_08277759.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners SPIN 1401G] gi|308164964|gb|EFO67207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners LactinV 09V1-c] gi|328934613|gb|EGG31117.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus iners SPIN 1401G] Length = 429 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 65 PIEIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169 >gi|42527180|ref|NP_972278.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema denticola ATCC 35405] gi|61211559|sp|Q73M37|CLPX_TREDE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|41817604|gb|AAS12189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema denticola ATCC 35405] Length = 415 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 1/111 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66 +P+E+ LD Y+IGQ+ AKR +++A+ N ++R P D ++ K N+LL+GPTG GK Sbjct: 63 TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LA+ PF + T TE GYVG +VE I+ L+ A ++E+ Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEA 173 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+S S K+ + I Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTSASVPPQGGRKHPNQDMLKI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF VS P DL Sbjct: 236 DTTNILFICGGAFVGLDKIVEARISTKPIGFGAEVKKLSEKNLTELYDQVS-PDDLVKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P++V L L K D IL + ++ +I Q++ K + + L F +D+I A+A Sbjct: 295 LIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDAITAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419 A++ N+ GAR L++++E+++ D F A ++ K ++I+ + + Sbjct: 355 QQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398 >gi|302671761|ref|YP_003831721.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio proteoclasticus B316] gi|302396234|gb|ADL35139.1| ATP-dependent Clp protease ATP-binding subunit ClpX2 [Butyrivibrio proteoclasticus B316] Length = 422 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--DLRD-ELMPKNILLVGPTG 63 P EI + LD Y+IGQ +AK+ +A+++ N ++R P D D EL NI+++GPTG Sbjct: 64 LKPAEIRNFLDEYVIGQDEAKKVLAVSVYNHYKRVLAPKNDDKNDVELQKSNIIMIGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 SGKTYLAQTLAKIINVPFAIADATTLTEAGYVGEDVENILLKLIQNA 170 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 59/228 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--------- 289 YGIV++DE DKI + I VS EGVQ+ LL +VEG+ SV + G Sbjct: 178 QYGIVYIDEIDKITKKSENVSITRDVSGEGVQQALLKIVEGTVASVPPQGGRKHPHQELI 237 Query: 290 SINTDHILFIASGAF---------HVSR-------------------------PADL--- 312 I+T +ILFI GAF + R P DL Sbjct: 238 QIDTSNILFICGGAFDGLDKIVEARLDRNSIGFNAEIADKSEREIGEVLKEVTPQDLVKF 297 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR P+ V L+ L+K ILT+ ++ L+ QY++L + + L F ++++ + Sbjct: 298 GLIPEFVGRVPITVTLEGLSKEALMRILTEPKNALVKQYQKLFDFDDVKLTFEDEAVHKI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A +A + GAR L+++ME+ + D+ + + D + V+ DA Sbjct: 358 AQMAYERET-----GARGLRSIMEKTMMDVMYEIPSDDTISECVITDA 400 >gi|302035646|ref|YP_003795968.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus Nitrospira defluvii] gi|300603710|emb|CBK40041.1| ATP-dependent Clp protease, ATP-binding subunit clpX [Candidatus Nitrospira defluvii] Length = 418 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 6/106 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P EI LD+Y++GQ AKR +++A+ N ++R + A +D EL NIL++GPTG Sbjct: 64 PAEIKHHLDQYVVGQDRAKRILSVAVHNHYKR--ISAKEKDVDDVELQKGNILVIGPTGT 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE II L+ A Sbjct: 122 GKTLLAQTLAKFLDVPFTLADATTLTEAGYVGEDVENIILKLLQAA 167 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 60/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 177 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQEFIQV 236 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 NT +ILFI GAF HV +P DLL Sbjct: 237 NTSNILFICGGAFVGLEHIIEQRMNRKSMGFGAEVRGRNDIRLGELLPHV-QPEDLLKYG 295 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L++ ILT+ + L QY++L+ E + L FTE ++ A+A Sbjct: 296 LIPEFIGRLPVVATLDELDEQALIRILTEPRNALTKQYEKLLSFEKVKLRFTEGALSAVA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVI 414 A + GAR L++++E + D+ + A S Q K VVI Sbjct: 356 RKAFTQKT-----GARGLRSILEEAMLDVMYDAPSQKQIKEVVI 394 >gi|260578312|ref|ZP_05846228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium jeikeium ATCC 43734] gi|258603614|gb|EEW16875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium jeikeium ATCC 43734] Length = 424 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60 P I LD Y+IGQ +AKR +A+A+ N ++R Q+ +D EL NIL++G Sbjct: 62 PAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNATARRSDDEVELAKSNILMLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 56/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T ++LFI +GAF P DL + Sbjct: 241 DTKNVLFIVAGAFSGLEKVISERRGKKGLGFGAEISAKSEEDPNPFQFVEPEDLVKFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV H+ L++ +LT+ +++L+ QY+ L +G+ L F ++++ +A Sbjct: 301 PELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVRLTFEDEALREIAQK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L+++ME +L FS + +E VI Sbjct: 361 AL-----ARETGARGLRSIMETLLLPTMFSIPEDEETGEVI 396 >gi|254821425|ref|ZP_05226426.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium intracellulare ATCC 13950] Length = 426 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYLRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|325474231|gb|EGC77419.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Treponema denticola F0402] Length = 415 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 1/111 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGK 66 +P+E+ LD Y+IGQ+ AKR +++A+ N ++R P D ++ K N+LL+GPTG GK Sbjct: 63 TPQELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMNPPLENDVVIEKSNVLLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 T +++ LA+ PF + T TE GYVG +VE I+ L+ A ++E+ Sbjct: 123 TLLAKTLAQKMQVPFAIADATTLTEAGYVGEDVENILLKLIQNANGDIKEA 173 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+S S K+ + I Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTSASVPPQGGRKHPNQDMLKI 235 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF VS P DL Sbjct: 236 DTTNILFICGGAFVGLDKIVEARISTKPIGFGAEVKKLSEKNLTELYDQVS-PDDLVKFG 294 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P++V L L K D IL + ++ +I Q++ K + + L F +D+I A+A Sbjct: 295 LIPELIGRIPIKVALNELTKEDLTRILVEPKNAIIKQFQATFKLDNVDLHFDKDAITAIA 354 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTVVIDAEYV 419 A++ N+ GAR L++++E+++ D F A ++ K ++I+ + + Sbjct: 355 QQAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGRKELIINKKMI 398 >gi|302191374|ref|ZP_07267628.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus iners AB-1] Length = 429 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 179 GIIYIDEIDKISKKSENLSITRDVSGEGVQQSLLKILEGTVASVPPQGGRKHPQAEMIKI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSR----PADLLP 314 +T +ILFI GAF H++ L+P Sbjct: 239 DTTNILFIVGGAFDGIQNIVNDRLGKKTIGFGSKNNSIADIENWQKHLTTDDLVKYGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + D ILT+ ++ L+ QYK+L+ +G+ L+F+ D+++A+A +A Sbjct: 299 EFIGRVPIITTLDKLTEDDLVRILTEPKNALVKQYKKLLNLDGVELEFSTDALNAIATMA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +N N +GAR L+++ME + DI + + + VI E V Sbjct: 359 LNKN-----MGARGLRSIMENAMMDIMYGIPSEKNISKVIVTESV 398 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P +I LD Y++GQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG G Sbjct: 65 PIDIKKHLDDYVVGQDSAKKVLSVAVYNHYKRISQIDTDAYSDTELQKSNIALIGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 169 >gi|257140629|ref|ZP_05588891.1| ATP-dependent protease ATP-binding subunit HslU [Burkholderia thailandensis E264] Length = 107 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 70/105 (66%) Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 DF IL T+++L+ QY+ L+ TE + L+F +D I LA++A +N +IGARRL TV Sbjct: 3 DFEAILVATDASLVKQYQALLATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTV 62 Query: 393 MERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +E++LE++SF+A + ++V IDA YV +G+ + D+ ++L Sbjct: 63 IEKLLEEVSFAAGNHAGQSVTIDAAYVDRALGEVSKDEDLSRYVL 107 >gi|78485522|ref|YP_391447.1| ATP-dependent protease ATP-binding subunit [Thiomicrospira crunogena XCL-2] gi|78363808|gb|ABB41773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thiomicrospira crunogena XCL-2] Length = 416 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVG 65 +P EI L+ Y+IGQ AK+ +++A+ N +RR + +DE L NILL+GPTG G Sbjct: 60 TPHEISQILNDYVIGQYQAKKVLSVAVYNHYRRLE-SGHQKDEVELNKSNILLIGPTGSG 118 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LARL PF + T TE GYVG +VE I+ L+ N ++ R Sbjct: 119 KTLLAQTLARLLDVPFAIADATTLTEAGYVGEDVESIVLKLLQRCDNDAEKAER 172 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + G + Sbjct: 173 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTVANIPPQGGRKHPNQDMIQV 232 Query: 292 NTDHILFIASGAFH------------------------------VSR------PADL--- 312 +T ILFI GAF VS P DL Sbjct: 233 DTSKILFIVGGAFEGLDKIIEQRTEKNIGIGFSAEVKSQDKKATVSEKFQNIEPEDLVKF 292 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR P+ L+ L++ ILT+ ++ L+ QY+++ + EG+ L F +D++ + Sbjct: 293 GLIPEFVGRLPILAALEELDEKALIQILTEPKNALVKQYQKMFELEGVELQFRKDALSEI 352 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 A++A+ + GAR L++++E+ L D + ++ EK V+ A Sbjct: 353 ANLAIERKT-----GARGLRSILEKTLLDTMYDLPSMKNVEKVVINKA 395 >gi|322387323|ref|ZP_08060933.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus infantis ATCC 700779] gi|321141852|gb|EFX37347.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus infantis ATCC 700779] Length = 410 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L++++E + D+ F + KTV I E V Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 399 >gi|289422715|ref|ZP_06424555.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus anaerobius 653-L] gi|289156894|gb|EFD05519.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus anaerobius 653-L] Length = 422 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P+E++ L+ Y+IGQ AK+A+++A+ N ++R + D+ E+ NILL+GPTG G Sbjct: 65 PKEMMEILNDYVIGQSGAKKALSVAVYNHYKRIYSENTTGDV--EVQKSNILLLGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE II LV A Sbjct: 123 KTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIILKLVQAA 167 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 177 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANVPPSGGRKHPHQEFLKV 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 237 DTTNILFILGGAFDGIEKIVQKRGKEKSLGFGAKIESKNDMDIGKLYSQVVPDDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT+ ++ L QY +L + + L+F ED++ A+A Sbjct: 297 IPEFIGRVPVLATLDLLDEESLVKILTEPKNALTKQYAKLFEYDDAKLEFEEDALRAVAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A+ + GAR L++++E L D+ + L+ EK ++ Sbjct: 357 KAIERKT-----GARGLRSIIEHALMDVMYEVPSLENVEKVII 394 >gi|68535618|ref|YP_250323.1| ATP-dependent protease ATP-binding subunit [Corynebacterium jeikeium K411] gi|68263217|emb|CAI36705.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium jeikeium K411] Length = 424 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60 P I LD Y+IGQ +AKR +A+A+ N ++R Q+ +D EL NIL++G Sbjct: 62 PAAIAEFLDSYVIGQDEAKRTLAVAVYNHYKRIQVEESNAAARRSDDEVELAKSNILMLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 56/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T ++LFI +GAF P DL + Sbjct: 241 DTKNVLFIVAGAFSGLEKVISERRGKKGLGFGAEISAKSEEDPNPFQFVEPEDLVKFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV H+ L++ +LT+ +++L+ QY+ L +G+ L F ++++ +A Sbjct: 301 PELIGRLPVLTHVGHLDEDALVRVLTEPKNSLVRQYQRLFDMDGVRLTFEDEALREIAQK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L+++ME +L F+ + +E VI Sbjct: 361 AL-----ARETGARGLRSIMETLLLPTMFAIPEDEETGEVI 396 >gi|41408376|ref|NP_961212.1| ATP-dependent protease ATP-binding subunit [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466554|ref|YP_880943.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium avium 104] gi|254774532|ref|ZP_05216048.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium avium subsp. avium ATCC 25291] gi|61211562|sp|Q73XN1|CLPX_MYCPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214785|sp|A0QDF5|CLPX_MYCA1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|41396732|gb|AAS04595.1| ClpX [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167841|gb|ABK68738.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium avium 104] Length = 426 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PIEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRHEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L++ IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDRESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|329121862|ref|ZP_08250477.1| ATP-dependent Clp protease ATP-binding subunit [Dialister micraerophilus DSM 19965] gi|327467800|gb|EGF13292.1| ATP-dependent Clp protease ATP-binding subunit [Dialister micraerophilus DSM 19965] Length = 411 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 178 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPNQEMIQL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ILFI GAF ++ P DLL Sbjct: 238 DTSKILFICGGAFAGMDKVVAKRLTKSAVGFGADIKKKEEKDVAKILNMVEPEDLLKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L L++ ILT ++ LI QYK+L+K + + L+F E +I A+A Sbjct: 298 IPEFIGRLPILVALSPLSEDALVRILTQPKNALIKQYKKLLKMDNVELEFEEKAIRAIAK 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E++++ + + ++++ I E V +H Sbjct: 358 KAIERNT-----GARGLRAIIEKIMQKVMYDIPEMKDVEKCIITEDVVVH 402 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI +D+Y+I Q++AK A+A+A+ N ++R + D + EL NI+++GPTG Sbjct: 63 TPVEIKEYMDQYVIDQEEAKIALAVAVYNHYKRIKYEKDGGNDDVELQKSNIIMLGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GKTLLAQTLARFLDVPFAISDATTLTEAGYVGEDVENILLRLIQAA 168 >gi|227509447|ref|ZP_03939496.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191159|gb|EEI71226.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 418 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63 +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R ++ +D D EL NI ++GPTG Sbjct: 66 LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 172 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 62/233 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 241 Query: 292 NTDHILFIASGAF--------------------------HVSR--------PADLL---- 313 +T +ILFI GAF +V+ P D+L Sbjct: 242 DTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKYVNSKNIMQSVIPEDMLKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ D ILT+ ++ L+ QY++L++ +G L+F ++ +A Sbjct: 302 IPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAELEFQPAALQKMAQ 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A++ N+ GAR L++++E V+ DI F S +D+ + V+I E V H Sbjct: 362 LAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSK--VIITPETVTNH 407 >gi|29831992|ref|NP_826626.1| ATP-dependent protease ATP-binding subunit ClpX [Streptomyces avermitilis MA-4680] gi|46576506|sp|Q820F8|CLPX_STRAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29609110|dbj|BAC73161.1| putative ATP-dependent Clp Protease ATP binding subunit [Streptomyces avermitilis MA-4680] Length = 428 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q + EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VVI A+ V ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNV 408 >gi|227512156|ref|ZP_03942205.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri ATCC 11577] gi|227524114|ref|ZP_03954163.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii ATCC 8290] gi|227084550|gb|EEI19862.1| ATP-dependent protease ATP-binding subunit [Lactobacillus buchneri ATCC 11577] gi|227088745|gb|EEI24057.1| ATP-dependent protease ATP-binding subunit [Lactobacillus hilgardii ATCC 8290] Length = 418 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63 +P +I+ +L+ ++IGQ +AKR +A+A+ N ++R ++ +D D EL NI ++GPTG Sbjct: 66 LTPAQILDKLNEFVIGQGNAKRTLAVAVYNHYKRVNEMISDPNDDLELQKSNICVIGPTG 125 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 172 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 62/233 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 241 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------L 312 +T +ILFI GAF SR D L Sbjct: 242 DTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTDSDEAKNVNSKNIMQSVIPEDMLKFGL 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L++ D ILT+ ++ L+ QY++L++ +G L+F ++ +A Sbjct: 302 IPEFIGRLPILTALDKLDEHDLVRILTEPKNALVKQYQKLIELDGAELEFQPAALQKMAQ 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A++ N+ GAR L++++E V+ DI F S +D+ + V+I E V H Sbjct: 362 LAISRNT-----GARGLRSIIEDVMRDIMFDLPSRNDVSK--VIITPETVTNH 407 >gi|154686958|ref|YP_001422119.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus amyloliquefaciens FZB42] gi|166214755|sp|A7Z7B2|CLPX_BACA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154352809|gb|ABS74888.1| ClpX [Bacillus amyloliquefaciens FZB42] Length = 420 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QYK++++ + + L+F ++++ +A Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELEFEDEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F + D EK V V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409 >gi|168043143|ref|XP_001774045.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674591|gb|EDQ61097.1| predicted protein [Physcomitrella patens subsp. patens] Length = 392 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 7/110 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRD--ELMPKNILLVG 60 +PREI LD++++GQ+ AK+ +++A+ N ++R Q ++ D EL N+LL+G Sbjct: 12 TPREICQALDKFVVGQERAKKILSVAVYNHYKRIYHESVQKGSEEDDVVELEKSNVLLMG 71 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR PFI + T T+ GYVG +VE I+ L+ V+ Sbjct: 72 PTGSGKTLLAKTLARFVNVPFIIADATTLTQAGYVGEDVESILYKLLMVS 121 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 64/221 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + I Sbjct: 131 GIVYIDEVDKITKKAESVSISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDHIQI 190 Query: 292 NTDHILFIASGAF------HVSRPAD---------------------------------- 311 +T ILFI GAF R D Sbjct: 191 DTKDILFICGGAFIELAKTVAERKQDSSIGFGSPVRASMRGNKLTDSAITSSLLEMVESS 250 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +LN+ +LT+ + L QYK++ + L +T+ Sbjct: 251 DLISYGLIPEFIGRFPVLVSLSALNEDQLVQVLTEPRNALGKQYKKMFSMNNVKLHYTDG 310 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 ++ +A A+ V + GAR L+++ME +L + + D Sbjct: 311 ALRRIAQKAI-----VKNTGARGLRSIMETLLTEAMYQVPD 346 >gi|309388895|gb|ADO76775.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Halanaerobium praevalens DSM 2228] Length = 423 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y+IGQ+ AK+++++A+ N ++R + D EL NI+++GPTG GKT Sbjct: 67 PKEIKEYLDQYVIGQERAKKSLSVAVYNHYKRVNSNLMIDDVELQKSNIMMIGPTGCGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ P + T TE GYVG +VE I+ L+ A Sbjct: 127 LMAQTLAKIIDVPIAITDATSLTEAGYVGEDVENILLKLIQAA 169 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 60/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFIA GAF H+ +P DLL Sbjct: 239 DTTNILFIAGGAFDGLEKLIDSRISEKVMGFGADIKTQAEDENIGDTLKHI-QPQDLLHY 297 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV+V L L D I+ + + LI QY++ + I L+FT++++ ++ Sbjct: 298 GLIPEFIGRMPVQVTLDQLEAEDMVRIMKEPRNALIKQYEKFFAMDEIELEFTDEALKSI 357 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ N+ GAR L++V+E + DI + Sbjct: 358 AAKALDRNT-----GARGLRSVVENAVLDIMY 384 >gi|187735545|ref|YP_001877657.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia muciniphila ATCC BAA-835] gi|187425597|gb|ACD04876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Akkermansia muciniphila ATCC BAA-835] Length = 456 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 7/110 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + L++Y+IGQ AK+ +++A+ N + R + A + D E+ NILL G Sbjct: 101 TPEEMCATLNQYVIGQDYAKKVLSVAVYNHYMRLRQSAVMLDDKSLDDVEIEKSNILLAG 160 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA++ PF V+ T TE GYVG +VE II L+ A Sbjct: 161 PTGSGKTLLAKTLAKMLNVPFCIVDATTLTEAGYVGEDVENIILRLLQAA 210 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 75/246 (30%) Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286 GI+++DE DKI V RD VS EGVQ+ LL ++EG+ + Sbjct: 220 GIIYVDEIDKIGRKTQNVSVTRD------VSGEGVQQALLKIIEGTICNVPPTGGRKHPQ 273 Query: 287 -KYGSINTDHILFIASGAF------------------------------------HVSRP 309 +Y +NT+ ILFI GAF + P Sbjct: 274 QEYIRVNTEKILFIVGGAFVGLEDIIRKRLGATQMGFGAITEQRDRKEYSEEEILAQAMP 333 Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DL +PE GR P+ L L++S +LT+ ++ L+ QY +L+ G LD Sbjct: 334 EDLFSFGMIPEFVGRLPIFCPLSKLDESQLVRLLTEPKNALVKQYSKLLAMYGAKLDVLP 393 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-TVVIDAEYVRLHI 423 D++ A+A A+ + GAR L+++ E ++ D+ + ++ TV I E V Sbjct: 394 DALKAMAAEAMKRGT-----GARALRSIFETLMLDVMYKVPSMKNADTVTITRETV---T 445 Query: 424 GDFPSE 429 G+ P++ Sbjct: 446 GNKPAQ 451 >gi|120599413|ref|YP_963987.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. W3-18-1] gi|146292591|ref|YP_001183015.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella putrefaciens CN-32] gi|166215204|sp|A4Y5I3|CLPX_SHEPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215206|sp|A1RL88|CLPX_SHESW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120559506|gb|ABM25433.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella sp. W3-18-1] gi|145564281|gb|ABP75216.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella putrefaciens CN-32] Length = 426 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386 >gi|309790147|ref|ZP_07684719.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6] gi|308227732|gb|EFO81388.1| Sigma 54 interacting domain protein [Oscillochloris trichoides DG6] Length = 431 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR++ +LD+Y+IGQ AK +++A+ N ++R + A + D EL NILL+GPTG GK Sbjct: 73 TPRKLREKLDQYVIGQDRAKIVLSVAVYNHYKRIKAGAKVDDVELSKSNILLLGPTGSGK 132 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 133 TLLAQTLARILDVPFAIADATALTEAGYVGEDVENILLRLIQAA 176 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG +Y S Sbjct: 186 GIIYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGVAHVPPLPGRKHPQQEYISF 245 Query: 292 NTDHILFIASGAFH--------------------------VSRPADLL------------ 313 +T ++LFI GAF +S A LL Sbjct: 246 DTTNVLFICGGAFEGVEEIISQRMRGKSTIGFTSQHIHEDLSEHARLLSQLNQDDLLHYG 305 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L+ L ILT+ + ++ QY++L+ + + L+ T D++DA+ Sbjct: 306 FIPEFIGRVPVIVALEPLTTQAMLRILTEPRNAVVKQYQKLLALDHVDLEITPDALDAIV 365 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVR 420 + A+ + GAR L++++E VL D+ + QE +I+AE V+ Sbjct: 366 EQAMQAKT-----GARALRSIVEAVLLDVMYEVP-AQEHIGRCIINAEVVQ 410 >gi|295092869|emb|CBK78976.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridium cf. saccharolyticum K10] Length = 434 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 63/104 (60%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y++GQ++AK+ +++A+ N ++R +L NIL++GPTG GK Sbjct: 66 LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 126 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAA 169 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 178 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 237 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF P DL Sbjct: 238 IDTTNILFICGGAFDGLEKIVENRLGAGSIGFEVEIADRQNSDIDEMLAQVMPEDLTKFG 297 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V LKSLN+ IL+ ++ ++ QY+ L +G+ L+FT+D++ ++A Sbjct: 298 LIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV + GAR L+ +ME V+ DI + Sbjct: 358 HMAVERKT-----GARGLRAIMESVMMDIMY 383 >gi|224534186|ref|ZP_03674765.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia spielmanii A14S] gi|224514547|gb|EEF84862.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Borrelia spielmanii A14S] Length = 435 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 182 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 241 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 242 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ L+K D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 302 EFVGRLPVHSYLEKLSKEDLMRILVDPQNSIVKQYYYMFKMDNVELVFEKDALESIVDEA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + N+ GAR L++++E +L+D+ F + + K V++ E V Sbjct: 362 ILKNT-----GARGLRSILEGLLKDVMFEVPSISKAKKVIVTKESV 402 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P+++ LD Y++GQ+DAK+ +++A+ N ++R + D E+ NILLVGPTG G Sbjct: 68 TPKQLKDHLDMYVVGQEDAKKVLSVAVYNHYKRILKNNKYDDGIEIEKSNILLVGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLLAKTLASEMNVPFAIADATTLTEAGYVGEDVENILLKLIHAA 172 >gi|304311291|ref|YP_003810889.1| ATP-dependent Clp protease ATP-binding subunit [gamma proteobacterium HdN1] gi|301797024|emb|CBL45237.1| ATP-dependent Clp protease ATP-binding subunit [gamma proteobacterium HdN1] Length = 434 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 8/108 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDE----LMPKNILLV 59 SP+EI + LD Y+IGQ AK+ +A+A+ N ++R A R E L NILL+ Sbjct: 69 SPKEIKTILDDYVIGQDRAKKILAVAVYNHYKRIRSGNAKSAKGRGEGDIELSKSNILLI 128 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 129 GPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 176 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 189 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 248 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 249 DTTNILFICGGAFAGLEKVIQNRSTKSGIGFVASVKSKEDNINVGDTLKEVEPEDLVKFG 308 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ L+ L+++ ILT+ ++L QY++L + E I LDF D++ A+A Sbjct: 309 LIPEFVGRLPIIATLEELDEAALVRILTEPRNSLTKQYQKLFEMEDIELDFRTDALHAVA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 A+ + GAR L++++E VL D + A L+ T VV+D ++ Sbjct: 369 KKALERKT-----GARGLRSILENVLLDTMYDAPSLEGVTKVVVDEAVIK 413 >gi|115396830|ref|XP_001214054.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus terreus NIH2624] gi|114193623|gb|EAU35323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Aspergillus terreus NIH2624] Length = 602 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 100/408 (24%), Positives = 162/408 (39%), Gaps = 76/408 (18%) Query: 45 ADLRD----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 A+L D +L NILL+GP+GVGKT +++ LAR+ PF + T FT+ GY+G + E Sbjct: 160 AELNDSSPLQLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSISDCTPFTQAGYIGEDAE 219 Query: 101 QIIRDLVDVAINIVRESRR-----DEVREQASI-----------NAEERILDALVGKTAT 144 + L+ A V ++ R DEV + A+ ++ +L + G T Sbjct: 220 VCVHKLLAAANYDVEQAERGIIVLDEVDKIAAAKVTHGKDVSGEGVQQALLKIIEGTTVQ 279 Query: 145 SNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGR 204 ++ + R G + ++S + N P + E+++ R Sbjct: 280 VQAKQE-KSAPRLGGTPNS------FPSNSPLGNPPYPPSGGGNMPQKGEVYNV-----R 327 Query: 205 KKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 I + L + + MD + R SI +G + + + N Sbjct: 328 TDNILFIFSGAFVGLHK------VIMDRISRGSI----GFG-------QPVRSPTTSNEG 370 Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVS-------------RPAD 311 +P++ GS Y H+ F S A S P D Sbjct: 371 SAEARASNHQPIPILPGSEEEALY----KRHLPFFTSAAAESSDGEPPYFNALDLLNPTD 426 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE+ GR PV L +L + ILT+ ++LI QY L GI L FT + Sbjct: 427 LQNYGFIPELVGRVPVTAALSTLTQPLLVRILTEPRNSLIAQYTTLFSLSGIELRFTTPA 486 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + +A A + + GAR L+T +E +L D F K V++ Sbjct: 487 LHKIAGNAFTMGT-----GARALRTELETILSDAMFETPGSSVKFVLV 529 >gi|327334168|gb|EGE75882.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL097PA1] Length = 429 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDE-----LMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q +P R E L NIL++ Sbjct: 65 PRELCEFLDTWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|261253458|ref|ZP_05946031.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio orientalis CIP 102891] gi|260936849|gb|EEX92838.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio orientalis CIP 102891] Length = 427 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 14/107 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PR+I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+G Sbjct: 68 PRDIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLIG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 122 PTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFAAEVRSKDETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEDALIQILCEPKNALTKQYAALFELEDAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A A+ + GAR L++++E VL + + + + VVID ++ Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSMDDVSKVVIDESVIK 406 >gi|239917501|ref|YP_002957059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] gi|259491263|sp|C5CAX2|CLPX_MICLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|239838708|gb|ACS30505.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] Length = 432 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 15/118 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK--------- 54 +P+EI L+ ++IGQ+ AKR++A+A+ N ++R + P DL D L + Sbjct: 63 TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122 Query: 55 --NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL+VGPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 180 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 190 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 249 Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314 +T ++LFI +GAF H+ RP DLL P Sbjct: 250 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ L +LT+ ++ L+ QY+++ +G+ L+F +D++DA+ A Sbjct: 310 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + GAR L+++ME VL+ + F S SD+ TVVI + VR Sbjct: 370 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGDVVR 411 >gi|15605438|ref|NP_220224.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis D/UW-3/CX] gi|255311534|ref|ZP_05354104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis 6276] gi|255317835|ref|ZP_05359081.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis 6276s] gi|255349097|ref|ZP_05381104.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis 70] gi|255503634|ref|ZP_05382024.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis 70s] gi|255507313|ref|ZP_05382952.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis D(s)2923] gi|6831516|sp|O84711|CLPX_CHLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3329160|gb|AAC68300.1| CLP Protease ATPase [Chlamydia trachomatis D/UW-3/CX] gi|289525749|emb|CBJ15230.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia trachomatis Sweden2] gi|296435321|gb|ADH17499.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis E/150] gi|296436249|gb|ADH18423.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis G/9768] gi|296437178|gb|ADH19348.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis G/11222] gi|296438109|gb|ADH20270.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis G/11074] gi|296439038|gb|ADH21191.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis E/11023] gi|297140610|gb|ADH97368.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis G/9301] gi|297748836|gb|ADI51382.1| hypothetical protein CTDEC_0705 [Chlamydia trachomatis D-EC] gi|297749716|gb|ADI52394.1| hypothetical protein CTDLC_0705 [Chlamydia trachomatis D-LC] Length = 419 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +++A+ N ++R + L D + N+LL+GPTG G Sbjct: 67 LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG+ + +Y Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238 Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312 +NT++ILFI GAF S DL Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GRF V+ + L + ILT+ + ++ QY EL + E + L F ++++ A+A Sbjct: 299 MIPEFIGRFNCVVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L ++E +L D+ F Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384 >gi|307703276|ref|ZP_07640221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus oralis ATCC 35037] gi|307623142|gb|EFO02134.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus oralis ATCC 35037] Length = 401 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|307151648|ref|YP_003887032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 7822] gi|306981876|gb|ADN13757.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 7822] Length = 446 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PREI LD Y+IGQ +AK+ +++A+ N ++R R EL NILL+ Sbjct: 82 PREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRLSDIQSKRSGTGSIDDPIELQKSNILLM 141 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 GPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R ADLL Sbjct: 262 DTSNILFICGGAFVGLDKIVEQRLGKKSMGFIQPGDGNAKDKRTADLLKVIEPDDLVKFG 321 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L++ ILT + L+ QY++L+K + + L+F D++ A+A Sbjct: 322 MIPEFVGRIPVMASLDPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLEFKSDAVRAIA 381 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ ++ + Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLEVMY 407 >gi|328554439|gb|AEB24931.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus amyloliquefaciens TA208] gi|328912843|gb|AEB64439.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus amyloliquefaciens LL3] Length = 420 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QYK++++ + + LDF ++++ +A Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F + D EK V V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409 >gi|302545418|ref|ZP_07297760.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces hygroscopicus ATCC 53653] gi|302463036|gb|EFL26129.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptomyces himastatinicus ATCC 53653] Length = 428 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL------PADLRDELMPKNILLVGPT 62 PREI L+ Y++GQ+ AK+++++A+ N ++R Q D EL NILL+GPT Sbjct: 64 PREIYEFLEGYVVGQEAAKKSLSVAVYNHYKRVQAGENGSHSKDDGIELAKSNILLLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T ++LFI GAF SR P DL Sbjct: 241 DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGM 300 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF +++A+AD Sbjct: 301 IPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ L T GAR L+ ++E VL Sbjct: 361 QAI-LRGT----GARGLRAIIEEVL 380 >gi|57168395|ref|ZP_00367529.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter coli RM2228] gi|305432811|ref|ZP_07401969.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli JV20] gi|57020203|gb|EAL56877.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter coli RM2228] gi|304443965|gb|EFM36620.1| ATP-dependent Clp protease ATP-binding subunit [Campylobacter coli JV20] Length = 407 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 4/108 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LDRY+IGQ AK+ ++ + N ++R ++L+D EL NILL+GPT Sbjct: 60 DITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRL-FKSELQDDDVELFKSNILLIGPT 118 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 119 GSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 53/224 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 176 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 235 Query: 292 NTDHILFIASGAF------------------------------HVSRPADL-----LPEI 316 +T +ILF+ GAF P DL +PE+ Sbjct: 236 DTSNILFVCGGAFDGLETILKRKLGDKVVGFFDNEKENSKALLEKIEPDDLVHFGLIPEL 295 Query: 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 GR V L LN+ D ILT+ ++ ++ QY++L +G+ L F +D++ +A +A+ Sbjct: 296 IGRLHVITSLNELNEDDMVRILTEPKNAIVKQYQKLFAIDGVNLKFEDDALREIAKLALE 355 Query: 377 LNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + + +VI E VR Sbjct: 356 RKT-----GARGLRSIIEEIMVDLMFELPEYKNYDIVITKEVVR 394 >gi|221310762|ref|ZP_03592609.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. subtilis str. 168] gi|221315087|ref|ZP_03596892.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320006|ref|ZP_03601300.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. subtilis str. JH642] gi|221324288|ref|ZP_03605582.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. subtilis str. SMY] gi|255767648|ref|NP_390700.2| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. subtilis str. 168] gi|321312354|ref|YP_004204641.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis BSn5] gi|251757482|sp|P50866|CLPX_BACSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|225185276|emb|CAB14782.2| protein unfolding ATPase required for presentation of proteins to proteases [Bacillus subtilis subsp. subtilis str. 168] gi|291485237|dbj|BAI86312.1| ATP-dependent protease ATP-binding subunit [Bacillus subtilis subsp. natto BEST195] gi|320018628|gb|ADV93614.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis BSn5] Length = 420 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ Q+K++++ + + L+F E+++ +A Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395 >gi|16332067|ref|NP_442795.1| ATP-dependent protease ATP-binding subunit ClpX [Synechocystis sp. PCC 6803] gi|6225172|sp|Q55510|CLPX_SYNY3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|1001376|dbj|BAA10866.1| ATP-dependent protease ATPase subunit [Synechocystis sp. PCC 6803] Length = 445 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 9/119 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPKNILLVG 60 P I LD Y+IGQ +AK+ +++A+ N ++R L P D EL NILLVG Sbjct: 83 PTAIKQYLDEYVIGQDEAKKVLSVAVYNHYKRLNLLERNQEIDPGDAV-ELQKSNILLVG 141 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 PTGSGKTLLAQTLAKILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 200 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311 +T +ILFI GAF RP + Sbjct: 261 DTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAEPDDLVKFG 320 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ ILT + ++ QY+ L+ + + LDF D++ A+A Sbjct: 321 LIPEFIGRIPVMACLNPLDEDALIAILTQPRNAIVKQYQTLLGMDHVELDFQPDAVRAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 381 TEAHRRKT-----GARALRGIVEELMLDVMY 406 >gi|308174520|ref|YP_003921225.1| protein unfolding ATPase [Bacillus amyloliquefaciens DSM 7] gi|307607384|emb|CBI43755.1| protein unfolding ATPase required for presentation of proteins to proteases [Bacillus amyloliquefaciens DSM 7] Length = 417 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 63/239 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QYK++++ + + LDF ++++ +A Sbjct: 296 PEFIGRLPVIASLEQLDETALVEILTKPKNALVKQYKKMLELDDVELDFEDEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTV-----VIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F + D EK V V D E RL + D Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADGEAPRLVLKD 409 >gi|229543649|ref|ZP_04432709.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus coagulans 36D1] gi|229328069|gb|EEN93744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus coagulans 36D1] Length = 422 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI L Y+IGQ+ AK+++A+A+ N ++R + + + EL NI L+GPTG GKT Sbjct: 64 PHEIREILAEYVIGQEQAKKSLAVAVYNHYKRINSNSKIDEVELAKSNICLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 65/240 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF HV P DLL Sbjct: 236 DTTNILFICGGAFDGIDQIIKRRLGKKVIGFGTDLKNDELDEQSLLKHV-LPEDLLSFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ ILT+ ++ L+ QYK++++ + + L+F +D++ +A Sbjct: 295 IPEFIGRLPVIATLEQLDEEALIKILTEPKNALVKQYKKMLELDHVELEFEQDALKEIAK 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRLHIGD 425 A+ + GAR L++++E ++ D+ F S D+++ K V+D E+ RL + D Sbjct: 355 KAIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIEKCIVTKESVLDKEFPRLVLKD 409 >gi|166154047|ref|YP_001654165.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis 434/Bu] gi|166154922|ref|YP_001653177.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335248|ref|ZP_07223492.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis L2tet1] gi|238687397|sp|B0B8T1|CLPX_CHLT2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238687445|sp|B0BAG0|CLPX_CHLTB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|165930035|emb|CAP03518.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia trachomatis 434/Bu] gi|165930910|emb|CAP06472.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 419 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +++A+ N ++R + L D + N+LL+GPTG G Sbjct: 67 LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG+ + +Y Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238 Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312 +NT++ILFI GAF S DL Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLITFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GRF V+ + L + ILT+ + ++ QY EL + E + L F ++++ A+A Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L ++E +L D+ F Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384 >gi|311695075|gb|ADP97948.1| ATP-dependent Clp protease ATP-binding subunit ClpX [marine bacterium HP15] Length = 427 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI + LD Y+IGQ AK +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPAEIRNTLDEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKGDVELGKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T ++LFI GAF V+ D Sbjct: 242 DTGNMLFICGGAFAGLDKVIRERTEKNSIGFSASVASQDDAKNTGDVIKDVETEDLVKYG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ ILT+ +++L QY++L EG+ LDF ED++ A+A Sbjct: 302 LIPEFVGRLPVVATLNELDEEALVQILTEPKNSLTKQYQKLFDMEGVELDFREDALRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVID 415 A+ + GAR L+++ME L D + + T VVID Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVTKVVID 401 >gi|306829878|ref|ZP_07463065.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis ATCC 6249] gi|304427889|gb|EFM30982.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus mitis ATCC 6249] Length = 410 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|291548892|emb|CBL25154.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Ruminococcus torques L2-14] Length = 489 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD YI+GQ+ AK+A+++A+ N ++R E+ N+L++GPTG GKT Sbjct: 137 APHKIKARLDEYIVGQEYAKKAISVAVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKT 196 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LA+L P + T TE GY+G ++E ++ L+ A N V E EQ Sbjct: 197 YLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQGI 250 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TS+ R+V + ++ G Sbjct: 251 IFIDE--IDK-IAKKKTSSQRDVSGESVQQG 278 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 249 GIIFIDEIDKIAKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 308 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 +ILFI GAF V+ R ++P Sbjct: 309 KNILFICGGAFPDLEDIIKERLQKKTSMGFNAELKDTVEHDEELLSKVTIEDLRKFGMIP 368 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + ++ ++ QY++L+ + + L+F + +++A+A+ A Sbjct: 369 EFLGRLPIVFTLKGLDKEMLVKILKEPKNAILKQYQKLLALDEVKLEFDDSALEAIAEKA 428 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + D GAR L+ ++E + DI + Sbjct: 429 ME-----KDTGARALRAIIEEFMLDIMY 451 >gi|290960372|ref|YP_003491554.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces scabiei 87.22] gi|260649898|emb|CBG73014.1| ATP dependent Clp Protease ATP binding subunit [Streptomyces scabiei 87.22] Length = 428 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q + EL NILL+GP Sbjct: 64 PREIYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 58/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF P DL Sbjct: 242 DTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGM 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ IL + + L+ QY+ L + +G+ LDF ++++A+AD Sbjct: 302 IPEFIGRLPVITSVHNLDREALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + ++ VVI A+ VR ++ Sbjct: 362 QAI-LRQT----GARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVRSNV 408 >gi|306824842|ref|ZP_07458186.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433053|gb|EFM36025.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 410 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTADDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|293365855|ref|ZP_06612560.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus oralis ATCC 35037] gi|315613540|ref|ZP_07888447.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis ATCC 49296] gi|331265985|ref|YP_004325615.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus oralis Uo5] gi|291315679|gb|EFE56127.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus oralis ATCC 35037] gi|315314231|gb|EFU62276.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus sanguinis ATCC 49296] gi|326682657|emb|CBZ00274.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus oralis Uo5] Length = 410 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|270292403|ref|ZP_06198614.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M143] gi|270278382|gb|EFA24228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M143] Length = 410 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E+++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLNILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQSNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|269215645|ref|ZP_06159499.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia exigua ATCC 700122] gi|269131132|gb|EEZ62207.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Slackia exigua ATCC 700122] Length = 452 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 PRE+ L ++++GQ AKRA+++A+ N ++R L D+ EL N+LL+GPTG G Sbjct: 94 PRELYDLLSQHVVGQDAAKRALSVAVYNHYKRISLGQDVDADDVELAKSNVLLLGPTGSG 153 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 154 KTLLAQTLARALRVPFAIADATTLTEAGYVGEDVENILLKLITAA 198 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 103/225 (45%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG+ SV + G + Sbjct: 208 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEASVPPQGGRKHPQQELIHL 267 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF V + P DL Sbjct: 268 DTTNILFILGGAFVGLADIIGQRVGKTGIGFTSDLPESKKHEEAELLAQVLPEDLNKFGM 327 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L + D ILT+ ++ L+ QY + E L FT D++ A+A Sbjct: 328 IPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQYARMFDFEDSKLTFTPDALRAIAH 387 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDA 416 A ++ GAR L+++ ERVL+DI F + + T V +DA Sbjct: 388 EAKERST-----GARGLRSICERVLQDIMFDLPEHEGATAVTVDA 427 >gi|89098928|ref|ZP_01171808.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL B-14911] gi|89086332|gb|EAR65453.1| ATP-dependent protease ATP-binding subunit [Bacillus sp. NRRL B-14911] Length = 376 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ+ AK+++++A+ N ++R + + D EL NI ++GPTG GKT Sbjct: 19 PAEIRDILDEYVIGQEQAKKSLSVAVYNHYKRINSNSKIDDVELSKSNISMIGPTGSGKT 78 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 79 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 121 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 131 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 190 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 191 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSEQKQQELDQKELLSKVLPEDLLKFGLI 250 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ ILT ++ L+ QY+++++ + + L+F E ++ +A Sbjct: 251 PEFIGRLPVIASLTQLDEEALIEILTKPKNALVKQYQKMLELDDVELEFEEGALHEIAKK 310 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 311 AIERKT-----GARGLRSIIEGIMLDVMF 334 >gi|326203840|ref|ZP_08193702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium papyrosolvens DSM 2782] gi|325985938|gb|EGD46772.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium papyrosolvens DSM 2782] Length = 431 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD+Y++GQ AKR++++A+ N ++R D EL NI+++GPTG GKT Sbjct: 64 PKEIKEILDQYVVGQDTAKRSLSVAVYNHYKRINSDVKTSDIELQKSNIVMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 FLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 166 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T +ILFI GAF + + P DLL Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESNKDKDVGQLLKDILPQDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+K+ ILT+ ++ L+ QY++L + + ++L+ +++++ +A+ Sbjct: 296 IPEFVGRLPIVVTLQSLDKNALVQILTEPKNALVKQYQKLFEMDDVLLEIQDEALELIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E + + + + + +I E + H Sbjct: 356 KAIERNT-----GARGLRAILEEAMMGVMYDIPSMTNVEKCIIGKEVIAEH 401 >gi|89897900|ref|YP_515010.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydophila felis Fe/C-56] gi|123735930|sp|Q256C3|CLPX_CHLFF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|89331272|dbj|BAE80865.1| ATP-dependent Clp endopeptidase ATP-binding, ATP-binding subunit [Chlamydophila felis Fe/C-56] Length = 421 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D+Y++GQ+ AK+ +A+A+ N ++R + L + N+LL+GPTG G Sbjct: 68 LTPKEIKKHIDQYVVGQERAKKTIAVAVYNHYKRIRALLNNKHVSYGKSNVLLLGPTGSG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 172 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG++ + +Y Sbjct: 182 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 239 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 240 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDLGDFSQKDRDHLLTKVETEDLIAF 299 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + +I QY EL E + L F ++++ A+ Sbjct: 300 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIIKQYIELFSEENVKLIFEKEALYAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 360 AKKAKLAKT-----GARALGMILENLLRDLMF 386 >gi|227504042|ref|ZP_03934091.1| ATP-dependent protease ATP-binding subunit [Corynebacterium striatum ATCC 6940] gi|227199372|gb|EEI79420.1| ATP-dependent protease ATP-binding subunit [Corynebacterium striatum ATCC 6940] Length = 431 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDELMPKNI 56 P EI S LD+Y+IGQ AKR +A+A+ N ++R ++ D E+ NI Sbjct: 68 PSEISSFLDKYVIGQDQAKRVLAVAVYNHYKRIKVEETAGLEGRRKKVEDENVEIAKSNI 127 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 128 LLLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 251 DTSNILFIVAGAFAGLDKVIAERVGKKGVGFGAKLETADEREKLDLFSEVRPEDLVKFGL 310 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + +L++ +L + +++L+ QY+ L + +G L F + ++ A+A+ Sbjct: 311 IPEFIGRLPIVATVDNLDRESLVKVLVEPKNSLVKQYQRLFEMDGAELVFEDGALGAIAE 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A+ + GAR L+ +ME +L I + D ++ T V Sbjct: 371 LALERKT-----GARGLRAIMEELLVPIMYELPDREDITAV 406 >gi|326800323|ref|YP_004318142.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21] gi|326551087|gb|ADZ79472.1| Sigma 54 interacting domain protein [Sphingobacterium sp. 21] Length = 414 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI S LD+Y+IGQ DAK+ +++A+ N ++R Q++ D E+ NI++VG TG Sbjct: 62 LKPAEIKSHLDQYVIGQDDAKKVLSVAVYNHYKRLNQKVEKD-EIEIEKSNIIMVGETGT 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 GKTLLAKTIAKVLNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ K ++ Sbjct: 176 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAV 235 Query: 292 NTDHILFIASGAF-----------------------HVS----------RPADL-----L 313 NT +ILFI GAF H P DL + Sbjct: 236 NTSNILFICGGAFDGIQKKIANRMRTQTVGYKMNSEHAEIDLNNLYKYITPQDLKAFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L++ ILT+ ++ L+ QYK+L E I L F + + + D Sbjct: 296 PELIGRLPVITYLNPLDREALLNILTEPKNALVKQYKKLFDYEHIDLQFDTEVFEFIVDK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A +GAR L+ + E ++ D F Sbjct: 356 ANEFK-----LGARGLRAICEAIMLDAMF 379 >gi|289705666|ref|ZP_06502051.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus luteus SK58] gi|289557614|gb|EFD50920.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Micrococcus luteus SK58] Length = 432 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 15/118 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK--------- 54 +P+EI L+ ++IGQ+ AKR++A+A+ N ++R + P DL D L + Sbjct: 63 TPQEIFDHLESFVIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVG 122 Query: 55 --NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL+VGPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KSNILMVGPTGSGKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 180 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 190 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 249 Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314 +T ++LFI +GAF H+ RP DLL P Sbjct: 250 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ L +LT+ ++ L+ QY+++ +G+ L+F +D++DA+ A Sbjct: 310 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + GAR L+++ME VL+ + F S SD+ TVVI E VR Sbjct: 370 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGEAVR 411 >gi|313813440|gb|EFS51154.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL025PA1] Length = 429 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ----LPADLRDE-----LMPKNILLV 59 PRE+ LD ++IGQ++AKR +++A+ N ++R Q +P R E L NIL++ Sbjct: 65 PRELCEFLDAWVIGQEEAKRTLSVAVYNHYKRIQSEVNVPHARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE ++ A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALGAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio parahaemolyticus RIMD 2210633] gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AQ3810] gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus K5030] gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AN-5034] gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus Peru-466] gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus RIMD 2210633] gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AQ3810] gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus Peru-466] gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus AN-5034] gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio parahaemolyticus K5030] gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio parahaemolyticus 10329] Length = 426 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P++I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 401 >gi|319425893|gb|ADV53967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella putrefaciens 200] Length = 426 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL+ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVESILLDTMY 386 >gi|309811163|ref|ZP_07704959.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus sp. Ellin185] gi|308434893|gb|EFP58729.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dermacoccus sp. Ellin185] Length = 413 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD--ELMPKNILLVGPTGV 64 PREI L Y+IGQ AKR++A+A+ N ++R Q + +D E+ NILL+GPTG Sbjct: 64 PREIFDFLREYVIGQDAAKRSLAVAVYNHYKRVQAAEASGSKDPVEIAKSNILLIGPTGC 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR+ PF + T TE GYVG +VE I+ L+ + Sbjct: 124 GKTYLAQTMARMLNVPFAIADATALTEAGYVGEDVENILLKLLQAS 169 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTAASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF----------------------HVS----------RPADLL-----P 314 +T ++LFI GAF H+ +P DL+ P Sbjct: 239 DTTNVLFIVGGAFAGLEKIIEDRKGKKGLGFGSQLHLPAGGDASMTDVQPEDLMKFGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ L++ ILT+ ++ L+ QYK + + +G+ L+FT D++DA+A+ A Sbjct: 299 EFIGRLPVITTVEPLDREGMVSILTEPKNALVKQYKRMFEIDGVQLEFTPDALDAVAEQA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ + GAR L+ ++E VL + F Sbjct: 359 MSRGT-----GARGLRAILEEVLLPVMF 381 >gi|296331631|ref|ZP_06874100.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675410|ref|YP_003867082.1| protein unfolding ATPase required for presentation of proteins to proteases [Bacillus subtilis subsp. spizizenii str. W23] gi|296151226|gb|EFG92106.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413654|gb|ADM38773.1| protein unfolding ATPase required for presentation of proteins to proteases [Bacillus subtilis subsp. spizizenii str. W23] Length = 420 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+++A+A+ N ++R + + D EL NI L+GPTG GKT Sbjct: 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 58/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADLL----- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGGDNKAADLEKEDLLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ Q+K++++ + + L+F E+++ +A Sbjct: 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 395 >gi|212716952|ref|ZP_03325080.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM 16992] gi|212660237|gb|EEB20812.1| hypothetical protein BIFCAT_01896 [Bifidobacterium catenulatum DSM 16992] Length = 447 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 65/233 (27%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278 D++TV + IQ + GI+++DE DKI AR SG ++R EGVQ+ LL + Sbjct: 181 DVETVLQRLIQAADGDVARAQQGIIYIDEIDKI-ARKSGESTSITRDVSGEGVQQALLKI 239 Query: 279 VEGSSVSTKY-GS----------INTDHILFIASGAF----------------------H 305 +EG+ S GS I+T ILFI GAF H Sbjct: 240 LEGTVASVPVEGSRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 299 Query: 306 ----------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 AD LLPE GR PV L+ L + D IL + E+ L+ QY Sbjct: 300 EREVPKRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 359 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++L +G+ L FTED++ +A ++ + GAR L++++E+ LED F Sbjct: 360 QKLFAIDGVTLTFTEDAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 407 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 17/119 (14%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD-------------EL 51 P +I + LD Y++GQ+ AKR +++A+ N ++R + +L D ++ Sbjct: 75 PAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESTELSDRATRENDDPLAGVQV 134 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ A Sbjct: 135 AKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193 >gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio harveyi HY01] gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC BAA-1116] gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi 1DA3] gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio harveyi HY01] gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116] gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi 1DA3] Length = 426 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P++I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELEDAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 401 >gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio alginolyticus 40B] gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus 12G01] gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio alginolyticus 40B] Length = 426 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P++I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNESKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 401 >gi|307244054|ref|ZP_07526173.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus stomatis DSM 17678] gi|306492578|gb|EFM64612.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptostreptococcus stomatis DSM 17678] Length = 421 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P+EI++ L+ Y+IGQ AK+A+++A+ N ++R + D+ E+ NILL+GPTG Sbjct: 62 PKEIMAILNDYVIGQNKAKKALSVAVYNHYKRIYGDKIASEDI--EIQKSNILLLGPTGS 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA++ PF + T TE GYVG +VE I+ LV A + +++R Sbjct: 120 GKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENIVLKLVQAADFDIEKAQR 174 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 59/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 175 GIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKILEGTVANVPPSGGRKHPHQEFLKV 234 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF V + P DLL Sbjct: 235 DTTNILFILGGAFDGIEKIVQKRGKDKVLGFGAKIESKTDMDIGKLYSQVIPDDLLKYGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT+ +++L+ QY +L + + L+F +++ A+A Sbjct: 295 IPEFVGRIPVLATLDLLDEESLVKILTEPKNSLVKQYTKLFEYDDTKLEFEPEALSAIAK 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVV 413 A++ N+ GAR L++++E L + + L+ EK +V Sbjct: 355 KAIDRNT-----GARGLRSIIEHSLMETMYEIPSLENVEKVLV 392 >gi|296127044|ref|YP_003634296.1| hypothetical protein Bmur_2020 [Brachyspira murdochii DSM 12563] gi|296018860|gb|ADG72097.1| Sigma 54 interacting domain protein [Brachyspira murdochii DSM 12563] Length = 411 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64 P++I S LD Y+IGQ AK+ +++A+ N ++R Q D D E+ N+LL+GPTG Sbjct: 64 LPPKQIKSLLDEYVIGQNYAKKVLSVAVYNHYKRITQSAEDKNDVEIEKSNVLLIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 169 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 60/241 (24%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YGS---- 290 I++ E GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +G Sbjct: 173 IKLAEK-GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGGRKHP 231 Query: 291 ------INTDHILFIASGAF---------HVSRPA------------------------- 310 I+T +ILFI GAF S+ Sbjct: 232 HQDNLHIDTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMDNLNYDEIMKNISTE 291 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE+ GR PV L+ L + + IL + ++ L QY++L + I L ++ Sbjct: 292 DLVKYGLIPELIGRLPVIATLEELKEEELLQILKEPKNALTKQYQKLFSYDNIELKIDDE 351 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRLHI 423 ++ + + ++ GAR L+ + ERV+ D + D ++K +D EYV + Sbjct: 352 ALKVIVKKTMEEHT-----GARGLRALFERVMLDAMYDMPDDNKEKKVFELDKEYVESRL 406 Query: 424 G 424 G Sbjct: 407 G 407 >gi|194335899|ref|YP_002017693.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon phaeoclathratiforme BU-1] gi|238693399|sp|B4SEI4|CLPX_PELPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|194308376|gb|ACF43076.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pelodictyon phaeoclathratiforme BU-1] Length = 438 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 5/116 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 SP+ I+ L +Y++GQ AK+++A+A+ N ++R +Q AD + NILL+GPTG Sbjct: 81 SPKAIMDSLGQYVVGQDAAKKSLAVAVYNHYKRIDSQEQQQADDEVVIEKSNILLIGPTG 140 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ A N+ R R Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHAADFNLERTER 196 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 61/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 255 NINTKNILFICGGAFEGLDKLIAKRVSKSSMGFGAKVKTTQIGYDPEILKLVMQDDLHEY 314 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ R IL + ++ + QYK+L + +G+ L+FTE+++D + Sbjct: 315 GLIPEFIGRLPVISTLEMLDEKALRNILVEPKNAITKQYKKLFEMDGVELEFTEEALDKV 374 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 +A+ + GAR L++V+E V+ DI F ++ Sbjct: 375 VKIAIERGT-----GARALRSVLENVMIDIMFEIPSMK 407 >gi|299140334|ref|ZP_07033497.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium sp. MP5ACTX8] gi|298597668|gb|EFI53843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Acidobacterium sp. MP5ACTX8] Length = 428 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P E+ + LD Y+IGQ+ K+ +A+A+ N ++R Q+ + EL NILLVGPTG GK Sbjct: 69 PAEVKAFLDEYVIGQEITKKKLAVAVYNHYKRVQMNRTRGNDVELAKSNILLVGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF V+ T TE GYVG +VE I+ L+ A Sbjct: 129 TLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENILLKLLQAA 172 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 66/219 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKLLEGTVASVPPQGGRKHPHQEFTIV 241 Query: 292 NTDHILFIASGAF-------------------------------------------HVSR 308 +T +ILFI GAF + Sbjct: 242 DTTNILFICGGAFVGLEKVIGRRIGKKALGFKAISDPNAKEADVTPIRAQRDSELLRKAE 301 Query: 309 PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DLL PE GR PV L L+++ ILT + ++ QY +L EG+ + +T Sbjct: 302 PQDLLKYGLIPEFVGRLPVLGILDELDEAALIEILTKPRNAILKQYAKLFDYEGVKVIWT 361 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +D+ A+A A+ +GAR L+ ++E ++ D+ + Sbjct: 362 DDAARAIAREALTRK-----VGARGLRMILEELMLDLMY 395 >gi|78188166|ref|YP_378504.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium chlorochromatii CaD3] gi|78170365|gb|ABB27461.1| ClpX, ATPase regulatory subunit [Chlorobium chlorochromatii CaD3] Length = 443 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 4/107 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63 SP+ IV LD+Y++GQ+ AK+++A+A+ N ++R A L + ++ K NILL+GPTG Sbjct: 86 SPKAIVDVLDQYVVGQERAKKSLAVAVYNHYKRIESHNTSAALDEVVIEKSNILLLGPTG 145 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ + Sbjct: 146 TGKTLLAQTLANLLDVPFSIVDATSLTEAGYVGDDVETILARLLHAS 192 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 202 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQGLLKILEGAVVGVPPKGGRKHPEQPLI 259 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 ++NT +ILFI GAF VS+ + Sbjct: 260 NVNTKNILFICGGAFEGIDKIIARRVSKSSMGFGAKVKSSSMDYDPDILRQVMQDDLHEY 319 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L++ IL + ++ + QYK+L +G+ L+FT+++++ + Sbjct: 320 GLIPEFIGRLPVISTLDMLDEKALHNILVEPKNAITKQYKKLFDMDGVELEFTDEALEKV 379 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 ++A + GAR L++V+E V+ DI + ++E ++ AE + Sbjct: 380 VNIAKERGT-----GARALRSVLESVMIDIMYEIPSMKETHKCIVTAETI 424 >gi|15841981|ref|NP_337018.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium tuberculosis CDC1551] gi|13882255|gb|AAK46832.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mycobacterium tuberculosis CDC1551] gi|323718963|gb|EGB28113.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Mycobacterium tuberculosis CDC1551A] Length = 426 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA + PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLATMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFADVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|326382828|ref|ZP_08204518.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia neofelifaecis NRRL B-59395] gi|326198418|gb|EGD55602.1| ATP-dependent protease ATP-binding subunit ClpX [Gordonia neofelifaecis NRRL B-59395] Length = 429 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 10/112 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------PADLRDELMPKNILL 58 P EI LD Y++GQ AKR +A+A+ N ++R Q P EL NIL+ Sbjct: 64 PAEIRDFLDNYVVGQDSAKRTLAVAVYNHYKRIQAGEKKAGDKRSPGAEPVELAKSNILM 123 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 245 DTTNVLFIVAGAFAGLEKVVDERIGKRGIGFGNDVPSKDKVDTTDHFAEVMPEDLIKFGL 304 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + + L+F++D+++A+AD Sbjct: 305 IPEFIGRLPVVASVANLDKEALVSILSEPKNALVKQYVRLFDMDNVELEFSQDALEAVAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A++ + GAR L+ +ME VL + + + VV+ E VR Sbjct: 365 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTGETVR 408 >gi|312863135|ref|ZP_07723373.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus vestibularis F0396] gi|311100671|gb|EFQ58876.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus vestibularis F0396] Length = 408 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGV 64 P+E++ L+ Y++GQ AKRA+++A+ N ++R + R+E L NIL++GPTG Sbjct: 63 PKELLDILNNYVVGQDRAKRALSVAVYNHYKRINF-TESREENDVDLQKSNILMIGPTGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 122 GKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADFNIERAER 176 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 55/219 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D L+P Sbjct: 237 DTKNILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D ILT+ + L+ QY+ L+ +G+ L+F +D+++A+A A Sbjct: 297 EFIGRLPVLAALEQLTVDDLVRILTEPRNALVRQYQTLLSYDGVELEFDQDALEAIASKA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 + + GAR L++++E V+ D+ F ++ T V Sbjct: 357 IERKT-----GARGLRSIIEEVMMDVMFEIPSQEDVTKV 390 >gi|284030230|ref|YP_003380161.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella flavida DSM 17836] gi|283809523|gb|ADB31362.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Kribbella flavida DSM 17836] Length = 431 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 10/112 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPKNILL 58 PREI L+ Y++GQ AK+A+A+A+ N ++R + D EL NILL Sbjct: 64 PREIYDFLNAYVVGQDVAKKALAVAVYNHYKRVRDGQGTSSAGRHAKDEAVELAKSNILL 123 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 IGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 175 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 185 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAF------------------HVSR---------------PADLL----- 313 +T ++LFI GAF + SR P DLL Sbjct: 245 DTTNVLFIVGGAFAGLDHMVEQRVGKKTLGFNTSREPEKPKEVSGYSDVMPEDLLKFGLI 304 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV + L++ IL++ ++ L+ QY+ L + + + L+F+ED+++A+AD Sbjct: 305 PEFIGRLPVITTVSPLDRDALIKILSEPKNALVKQYRRLFEIDNVELEFSEDAVEAIADQ 364 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ L T GAR L+ +ME VL ++ + ++ VV+ E V Sbjct: 365 AL-LRGT----GARGLRAIMEEVLLNVMYEVPSREDVAKVVVTGEVV 406 >gi|225352781|ref|ZP_03743804.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156388|gb|EEG69957.1| hypothetical protein BIFPSEUDO_04411 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 447 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 17/119 (14%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD-------------EL 51 P +I + LD Y++GQ+ AKR +++A+ N ++R + A LRD ++ Sbjct: 75 PAQISAYLDNYVVGQESAKRTLSVAVYNHYKRVNMEMRESAALRDRAAHASDDPLAGVQV 134 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTGVGKT +++ LA++ PF+ + T TE GYVG +VE +++ L+ A Sbjct: 135 SKSNILLLGPTGVGKTYLAQTLAKVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQAA 193 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278 D++TV + IQ + GIV++DE DKI AR SG ++R EGVQ+ LL + Sbjct: 181 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 239 Query: 279 VEGSSVSTKY-GS----------INTDHILFIASGAF----------------------- 304 +EG+ S GS I+T ILFI GAF Sbjct: 240 LEGTVASVPVEGSRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 299 Query: 305 -H--------VSRPAD------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 H AD LLPE GR PV L+ L + D IL E+ L+ QY Sbjct: 300 DHEVPNRELLAQASADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVAPENALVKQY 359 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++L +G+ L FTE ++ +A ++ + GAR L++++E+ LED F Sbjct: 360 QKLFAIDGVTLTFTEGAVRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 407 >gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. Ex25] gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp. Ex25] Length = 426 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P++I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 67 TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 120 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 121 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 168 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 181 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 241 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNESKTVGELFTQVEPEDLVKY 300 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 301 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 361 AKKAMERKT-----GARGLRSILEGVLLETMYELPSATDVSK--VVID 401 >gi|255014830|ref|ZP_05286956.1| ATP-dependent protease ATP-binding subunit ClpX [Bacteroides sp. 2_1_7] gi|298375769|ref|ZP_06985725.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_19] gi|298266806|gb|EFI08463.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacteroides sp. 3_1_19] Length = 410 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K ++ Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIAV 234 Query: 292 NTDHILFIASGAFH-------------------------VSR--------PADL-----L 313 +T +ILF+ GAF V R P DL + Sbjct: 235 DTKNILFVCGGAFDGIEKKIAQRLNTRVVGYSASLDTATVDRNNLLKYITPTDLKSFGLI 294 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L L++ R ILT+ ++++I QY +L +GI L F E + + D Sbjct: 295 PEIIGRLPILTYLNPLDRDTLRNILTEPKNSIIKQYVKLFDMDGIKLTFDEKVYEFIVDK 354 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E V+ D +S + K + + EY + Sbjct: 355 ALEFK-----LGARGLRSIVEAVMMDAMYSMPSQKVKELHVTLEYAK 396 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P +I + LD+Y+IGQ DAKR +++++ N ++R Q++ AD E+ NI++VG TG GK Sbjct: 63 PEDIKTFLDQYVIGQDDAKRYLSVSVYNHYKRLLQKVTAD-DVEIEKSNIIMVGATGTGK 121 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ A V ++R Sbjct: 122 TLLARTIAKLLHVPFAIVDATVLTEAGYVGEDIESILTRLLQAADYDVEAAQR 174 >gi|225574480|ref|ZP_03783090.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM 10507] gi|225038307|gb|EEG48553.1| hypothetical protein RUMHYD_02555 [Blautia hydrogenotrophica DSM 10507] Length = 477 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 13/153 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R + D DE+ N+L++GPTG G Sbjct: 123 APHKIKATLDDYVIGQEHAKKVISVAVYNHYKR--VATDTMDEIEIEKSNMLMIGPTGCG 180 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V ++ EQ Sbjct: 181 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQ 234 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D L K T N R+V + ++ G Sbjct: 235 GIIFIDE--IDKLAKKKNT-NQRDVSGESVQQG 264 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DK+ + + N VS E VQ+ LL L+EGS V G ++NT Sbjct: 235 GIIFIDEIDKLAKKKNTNQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNT 294 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 295 RNILFICGGAFPELENVIKERLNKQASMGFGADLKDKYDRDNKILEKVTVEDLRSFGMIP 354 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + IL + ++ ++ QY++L+ + + L+F + +++A+A A Sbjct: 355 EFIGRLPIIFTLSGLTQEMMVKILKEPKNAILKQYQKLLALDEVRLEFDDGALEAIAKKA 414 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + ++ GAR L+ ++E + DI + D V+I EY+ Sbjct: 415 LEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGQVIITREYI 455 >gi|24373361|ref|NP_717404.1| ATP-dependent protease ATP-binding subunit [Shewanella oneidensis MR-1] gi|46576583|sp|Q8EG18|CLPX_SHEON RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|24347624|gb|AAN54848.1|AE015624_1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella oneidensis MR-1] Length = 426 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL++ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386 >gi|15674910|ref|NP_269084.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes M1 GAS] gi|19745953|ref|NP_607089.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS8232] gi|21910140|ref|NP_664408.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS315] gi|28896161|ref|NP_802511.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes SSI-1] gi|71903336|ref|YP_280139.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS6180] gi|71910504|ref|YP_282054.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS5005] gi|94990258|ref|YP_598358.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS10270] gi|94994179|ref|YP_602277.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS10750] gi|306827518|ref|ZP_07460801.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus pyogenes ATCC 10782] gi|54036858|sp|P63794|CLPX_STRP3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54036859|sp|P63795|CLPX_STRP8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|54040896|sp|P63793|CLPX_STRP1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123640038|sp|Q48U22|CLPX_STRPM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215212|sp|Q1JHC2|CLPX_STRPD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215213|sp|Q1J741|CLPX_STRPF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|13622051|gb|AAK33805.1| putative ATP-dependent Clp protease subunit X [Streptococcus pyogenes M1 GAS] gi|19748112|gb|AAL97588.1| putative ATP-dependent Clp protease subunit X [Streptococcus pyogenes MGAS8232] gi|21904333|gb|AAM79211.1| putative ATP-dependent Clp protease subunit X [Streptococcus pyogenes MGAS315] gi|28811411|dbj|BAC64344.1| putative ATP-dependent Clp protease subunit X [Streptococcus pyogenes SSI-1] gi|71802431|gb|AAX71784.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus pyogenes MGAS6180] gi|71853286|gb|AAZ51309.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus pyogenes MGAS5005] gi|94543766|gb|ABF33814.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Streptococcus pyogenes MGAS10270] gi|94547687|gb|ABF37733.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Streptococcus pyogenes MGAS10750] gi|304430316|gb|EFM33342.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus pyogenes ATCC 10782] Length = 409 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L F +++++A+A+ A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|88855130|ref|ZP_01129795.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium PHSC20C1] gi|88815658|gb|EAR25515.1| ATP-dependent protease ATP-binding subunit [marine actinobacterium PHSC20C1] Length = 425 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PREI + L+ Y+IGQ+ AKRA+++A+ N ++R + + E+ NILL+G Sbjct: 66 PREIYAFLEEYVIGQEAAKRALSVAVYNHYKRVRARNTITSADAVIDDVEIAKSNILLIG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 185 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQV 244 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADL-----LP 314 +T ++LFI +GAF +S P DL +P Sbjct: 245 DTTNVLFIVAGAFAGLEEIISNRAGKKGIGFGAPLHSKGDDVNLFGEVLPEDLHKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ ILT ++ L+ QY+ + + +G+ L+F D+++++AD+A Sbjct: 305 EFIGRLPVVTTVTQLDQVALMDILTTPKNALVRQYQRMFEIDGVELEFERDALESIADLA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 V L T GAR L+ ++E VL I F Sbjct: 365 V-LRQT----GARGLRAILEEVLGPIMF 387 >gi|50083773|ref|YP_045283.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter sp. ADP1] gi|61211483|sp|Q6FEP7|CLPX_ACIAD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49529749|emb|CAG67461.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter sp. ADP1] Length = 436 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63 P EI + LD+Y+IGQ AK+ +++A+ N ++R + + E+ NILL+GPTG Sbjct: 63 PHEIRAALDQYVIGQDLAKKTLSVAVYNHYKRLKAGQSGHVSKHEVEIAKSNILLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 SGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 169 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 238 Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312 +T +ILFI GAF V + P DL Sbjct: 239 DTSNILFICGGAFAGLEKIVQQRHEKGGIGFNAEVKKKDETKKLAELFRQVEPTDLVKFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L+++ ILT+ ++ L QY+ L + E + L F E ++ A+A Sbjct: 299 LIPEFIGRLPVIATLEELDEAALMQILTEPKNALTRQYQSLFQMENVDLVFEESALRAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L+++ME VL + + ++ TVV++ +R Sbjct: 359 KKALERNT-----GARGLRSIMENVLLETMYDLPSRKDIGTVVVNEAVIR 403 >gi|258652075|ref|YP_003201231.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Nakamurella multipartita DSM 44233] gi|258555300|gb|ACV78242.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nakamurella multipartita DSM 44233] Length = 422 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P I LD+Y+IGQ AK+A+++A+ N ++R Q D E L NIL++GPTG G Sbjct: 64 PTAIREYLDQYVIGQDTAKKALSVAVYNHYKRIQAGPDRGPEPVELAKSNILMLGPTGCG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 60/237 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI +GAF V R P DL+ Sbjct: 238 DTTNVLFIVAGAFAGLEKIVGERVGRRGLGFGAEVRSKFDIDGSDVFSDVMPEDLIKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K ILT+ L QY+ L + +G+ L+F D+++A+AD Sbjct: 298 IPEFIGRLPVVASVTNLDKESLVKILTEPRDALSKQYQRLFEMDGVALEFEPDALEAIAD 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFPS 428 A+ L T GAR L+ +ME VL + + + VV+ AE VR ++ +P+ Sbjct: 358 EAI-LRGT----GARGLRAIMEEVLLPAMYEVPGRDDVERVVVSAETVRSNV--YPT 407 >gi|291087564|ref|ZP_06572003.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] gi|291074653|gb|EFE12017.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] Length = 443 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 63/104 (60%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI LD Y++GQ++AK+ +++A+ N ++R +L NIL++GPTG GK Sbjct: 75 LKPKEIKEFLDEYVVGQEEAKKVLSVAVYNHYKRITSQGSQDVDLQKSNILMLGPTGSGK 134 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 135 TYLANTLAKILNVPFAVADATTLTEAGYVGEDVENILLKIIQAA 178 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 187 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQELLQ 246 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 I+T +ILFI GAF P DL Sbjct: 247 IDTTNILFICGGAFDGLEKIVENRLGAGSIGFEVEIADRQNSDIDEMLAQVMPEDLTKFG 306 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV V LKSLN+ IL+ ++ ++ QY+ L +G+ L+FT+D++ ++A Sbjct: 307 LIPEFIGRVPVTVALKSLNEEALVEILSRPKNAIVKQYQALFDLDGVKLEFTDDALYSIA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +AV + GAR L+ +ME V+ DI + Sbjct: 367 HMAVERKT-----GARGLRAIMESVMMDIMY 392 >gi|119963777|ref|YP_948114.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrobacter aurescens TC1] gi|119950636|gb|ABM09547.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrobacter aurescens TC1] Length = 450 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56 PREI L Y+IGQ+ AKR++A+A+ N ++R Q + E+ NI Sbjct: 85 PREIFDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKAGSLGEGSHHEDVEIAKSNI 144 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 145 LLIGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 198 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 62/229 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 208 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 267 Query: 292 NTDHILFIASGAFH------VSR--------------------------PADLL-----P 314 +T ++LFI +GAF SR P DLL P Sbjct: 268 DTTNVLFIVAGAFAGLEDIIGSRSGRKGIGFGAPLNEARDNVDTYGEVMPEDLLKFGLIP 327 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + SL++ IL+ ++ L+ QY+++ + +G+ L F +D++DA+AD A Sbjct: 328 EFIGRLPVITTVSSLDRPALIQILSTPKNALVKQYQKMFQLDGVELQFDDDALDAIADQA 387 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419 + + GAR L+ +ME VL + F DL + TVVI A+ V Sbjct: 388 LERGT-----GARGLRAIMEDVLLPVMF---DLPSRDDIATVVITADVV 428 >gi|317026128|ref|XP_001389032.2| ATP-dependent Clp protease [Aspergillus niger CBS 513.88] Length = 666 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 114/483 (23%), Positives = 190/483 (39%), Gaps = 102/483 (21%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRN--------------------RWRRQQ----- 42 +PR + LD++++GQ AK+ +++A+ N +W R++ Sbjct: 136 TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 195 Query: 43 ---------------------LPADLRD--------ELMPKNILLVGPTGVGKTAISRRL 73 LP + +L NILL+GP+GVGKT +++ L Sbjct: 196 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 255 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASI 128 AR+ PF + T FT+ GY+G + E + L+ A V ++ R DEV + A+ Sbjct: 256 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGIIVLDEVDKIAAA 315 Query: 129 NAE-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 E + AL+ K T +V K+ R + ++ S F+ Sbjct: 316 KVSHGKDVSGEGVQQALL-KLIEGTTVQVQAKQERSAPRVGNSPNTFPSNNPLGNSPFNP 374 Query: 182 PGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI--- 238 GG + E+++ R I + L + + MD + R SI Sbjct: 375 NGG---NMPQKGEVYNV-----RTDNILFIFSGAFVGLHK------VIMDRISRGSIGFG 420 Query: 239 QMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296 Q V + D + I G E + + LP + +T S +++ Sbjct: 421 QPVRGSALTNNRSRDHTPGNNEPIPILPGSEEEALYKKHLPFF---TSATSPNSPDSEPT 477 Query: 297 LFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 F A + P DL +PE+ GR PV L +L ILT+ ++L+ QY Sbjct: 478 YF---NALDLLNPTDLQNYGFIPELVGRVPVTAALSTLTTPLLVRILTEPRNSLLAQYTT 534 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L GI + FT ++ +A A + + GAR L+T +E +L D F K Sbjct: 535 LFSLSGIEIRFTTPALHKIAANAFTMGT-----GARALRTELETILSDAMFETPGSSVKF 589 Query: 412 VVI 414 V++ Sbjct: 590 VLV 592 >gi|163841991|ref|YP_001626396.1| ATP-dependent protease ATP-binding subunit ClpX [Renibacterium salmoninarum ATCC 33209] gi|189044144|sp|A9WUW1|CLPX_RENSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|162955467|gb|ABY24982.1| ATP-dependent endopeptidase clp ATP-binding subunit [Renibacterium salmoninarum ATCC 33209] Length = 427 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 10/112 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-------ELMPKNILL 58 P+EI + L Y+IGQ+ AKR++++A+ N ++R Q + L D E+ NILL Sbjct: 64 PKEIFNFLQEYVIGQEPAKRSLSVAVYNHYKRIQAGSKGSALADGNHHDDVEIAKSNILL 123 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 IGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAA 175 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 244 Query: 292 NTDHILFIASGAFHVSR--------------------------------PADLL-----P 314 +T ++LFI +GAF P DLL P Sbjct: 245 DTTNVLFIVAGAFAGLEEIIGARAGKKGIGFGAPLGALSGDELGYGDVMPEDLLKFGLIP 304 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L++ IL++ ++ LI QY+++ +G+ L F +D+++A+AD A Sbjct: 305 EFIGRLPVITTVSHLDRPALMQILSEPKNALIKQYQKMFHLDGVDLVFEDDALEAIADQA 364 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + + GAR L+ +ME VL + F ++ + V+ AE VR Sbjct: 365 LERGT-----GARGLRAIMEEVLLPVMFELPSREDIASAVVTAEVVR 406 >gi|126700923|ref|YP_001089820.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile 630] gi|254976903|ref|ZP_05273375.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-66c26] gi|255094289|ref|ZP_05323767.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile CIP 107932] gi|255102471|ref|ZP_05331448.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-63q42] gi|255308376|ref|ZP_05352547.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile ATCC 43255] gi|255316043|ref|ZP_05357626.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-76w55] gi|255518700|ref|ZP_05386376.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-97b34] gi|255651822|ref|ZP_05398724.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-37x79] gi|255657262|ref|ZP_05402671.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-23m63] gi|260684848|ref|YP_003216133.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile CD196] gi|260688506|ref|YP_003219640.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile R20291] gi|296451897|ref|ZP_06893614.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP08] gi|296879708|ref|ZP_06903683.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP07] gi|306521609|ref|ZP_07407956.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium difficile QCD-32g58] gi|123066426|sp|Q180E8|CLPX_CLOD6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|115252360|emb|CAJ70201.1| ATP-dependent Clp protease ATP-binding subunit clpX [Clostridium difficile] gi|260211011|emb|CBA66322.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile CD196] gi|260214523|emb|CBE07037.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile R20291] gi|296259279|gb|EFH06157.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP08] gi|296429297|gb|EFH15169.1| ATP-dependent Clp protease ATP-binding subunit [Clostridium difficile NAP07] Length = 416 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66 P+E++ L+ Y+IGQ+ AK+A+++A+ N ++R + +D E+ NILL+GPTG GK Sbjct: 63 PKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKKSSSKDIEIQKSNILLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLARTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKI 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T ++LFI GAF P DLL Sbjct: 236 DTTNVLFILGGAFDGLEKIIQKRGGDKTLGFGAKIESKKELDLGKLYEKVLPEDLLKYGI 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L++ IL + ++ L+ QYK+L++ + + L+F E ++ A+A Sbjct: 296 IPEFIGRIPVLATLELLDEDALMQILQEPKNALVKQYKKLLELDDVELEFEEGALRAIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L++++E V+ + F Sbjct: 356 KAIERNT-----GARGLRSIVESVMMETMF 380 >gi|257869243|ref|ZP_05648896.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus gallinarum EG2] gi|257803407|gb|EEV32229.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Enterococcus gallinarum EG2] Length = 417 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+E++ L+ Y+IGQ AK+ +A+A+ N ++R + D EL NI L+GPTG GKT Sbjct: 67 PQELLHILNDYVIGQDRAKKTLAVAVYNHYKRVNVEPTAEDVELQKSNICLIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 127 FLAQTLARSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 169 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 58/240 (24%) Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG--- 289 +++M E GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 172 NVEMAEK-GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTQASVPPQGGRKH 230 Query: 290 ------SINTDHILFIASGAF---------------------------------HVSRPA 310 I+T +ILFI GAF H+ P Sbjct: 231 PHQEMIQIDTTNILFIVGGAFDGIDTIVKNRMGEKTIGFGTNNKRFSEDESIMQHII-PE 289 Query: 311 DLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DLL PE GR PV L L D ILT+ ++ L+ QY++L+ + L+F Sbjct: 290 DLLKFGLIPEFIGRLPVMAALDKLTTDDLVRILTEPKNALVKQYQKLLALDDTELEFEPA 349 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 ++ A+AD A+ N+ GAR L++++E ++ D+ F+ + VI E IG+ Sbjct: 350 ALRAIADKAIERNT-----GARGLRSIIENIMMDVMFNVPSDESIEKVIITEDAAKEIGE 404 >gi|191638334|ref|YP_001987500.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus casei BL23] gi|227535178|ref|ZP_03965227.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631581|ref|ZP_04674612.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066387|ref|YP_003788410.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus casei str. Zhang] gi|190712636|emb|CAQ66642.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus casei BL23] gi|227187223|gb|EEI67290.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526046|gb|EEQ65047.1| ATP-dependent protease ATP-binding subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438794|gb|ADK18560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus casei str. Zhang] gi|327382362|gb|AEA53838.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus casei LC2W] gi|327385562|gb|AEA57036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus casei BD-II] Length = 416 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI+ L+ Y+IGQ AK+A+++A+ N ++R Q+ +D EL NI L+GPTG G Sbjct: 64 PVEIMKTLNEYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 168 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 178 GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAF----HVSR-----------------------------PADLL----- 313 +T +ILFI GAF ++ + P DL+ Sbjct: 238 DTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTDSNEQVDPDKSLMQQIIPEDLMQFGII 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ LN+ D ILT+ ++ L+ QY++L+ + L+FT +++ A+A Sbjct: 298 PEFIGRIPILAALEKLNEDDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQ 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ V D GAR L+++ME +++D F Sbjct: 358 AI-----VRDTGARGLRSIMEAIMQDTMF 381 >gi|254495063|ref|ZP_05107987.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp. MED152] gi|85819413|gb|EAQ40570.1| ATP-dependent Clp protease ATP-binding subunit [Polaribacter sp. MED152] Length = 412 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P +I LD+YIIGQ + KRA+A+A+ N ++R + D E+ NI+LVG TG GK Sbjct: 63 PLQIKEFLDQYIIGQDETKRAMAVAVYNHYKRLLQDKNTEDDVEIEKSNIVLVGETGTGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ +A++ PF V+ T T+ GYVG +VE I+ L+ VA V ++ R Sbjct: 123 TLVAKTIAKMLNVPFSIVDATVLTQAGYVGEDVESILSRLLQVADYDVEKAER 175 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 56/232 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K+ + Sbjct: 176 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQALLKLLEGSVVNVAPKGGRKHPEQKFIEV 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 NT ILFIA GAF +S+ P DL + Sbjct: 236 NTKDILFIAGGAFSGIDKIISKRLNRQAVGFGASLEEDKLDEDNLLQYITPLDLKSFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV ++ L+ R ILT+ ++++I QY +L + + E++++ + + Sbjct: 296 PEIIGRLPVLSYMNPLDAKTLRAILTEPKNSIIKQYAKLFVMDDVNFTIDEEALNYIVEK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 AV +GAR L+++ E + D F +EK + +Y + + Sbjct: 356 AVEYK-----LGARGLRSLCEAIFTDAMFDLPSSEEKEFNVTKDYAEAKLSN 402 >gi|154174197|ref|YP_001407541.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter curvus 525.92] gi|112803786|gb|EAU01130.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter curvus 525.92] Length = 411 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63 N +P+++ S LD Y+IGQ AK+ ++ + N ++R ++++D E+ NILLVGPTG Sbjct: 60 NLTPKQLKSVLDSYVIGQDRAKKVFSVGVYNHYKRIFKQSNIKDDTEISKSNILLVGPTG 119 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 120 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 166 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 55/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 176 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 235 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILF+ GAF + P DL +P Sbjct: 236 DTTNILFVCGGAFDGLVDIIERRVGKNILGFNQEKRGKAEREDLLSLLEPDDLVHFGLIP 295 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + + D ILT+ ++ ++ QY++L +G L F +D++ +A +A Sbjct: 296 ELIGRLHVVATLNEITQEDMVKILTEPKNAILKQYQKLFAIDGATLKFDDDALKEVAALA 355 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + + GAR L+++ME ++ DI + +L++ VVI E V+ Sbjct: 356 IERKT-----GARGLRSIMEEIMTDIMYDLPELKDYEVVISKEVVK 396 >gi|332073906|gb|EGI84384.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA41301] Length = 410 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus AQ4037] gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus AQ4037] Length = 414 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLV 59 +P++I LD Y+IGQ AK+ +A+A+ N ++R LR+ EL NILL+ Sbjct: 55 TPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKR------LRNGDTTSEGVELGKSNILLI 108 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT ++ LAR PF + T TE GYVG +VE II+ L+ Sbjct: 109 GPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLL 156 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 169 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 228 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADL--- 312 +T ILFI GAF P DL Sbjct: 229 DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKY 288 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL + ++ L QY L + E L+F ED++ A+ Sbjct: 289 GLIPEFIGRLPVTTTLTELDEEALIQILCEPKNALTKQYAALFELENAELEFREDALRAI 348 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L++++E VL + + SA+D+ + VVID Sbjct: 349 AKKAMERKT-----GARGLRSILESVLLETMYELPSATDVSK--VVID 389 >gi|262198159|ref|YP_003269368.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Haliangium ochraceum DSM 14365] gi|262081506|gb|ACY17475.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Haliangium ochraceum DSM 14365] Length = 422 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---DLRDELMPKNILLVGPTGVG 65 P+ I LD Y+IGQ+ AK+ +A+A+ N ++R A + EL NILL+GPTG G Sbjct: 67 PQHIKKILDEYVIGQERAKKILAVAVHNHYKRIDHKAGDDEEEVELQKSNILLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE II L+ A + + ++R Sbjct: 127 KTLLAQTLARILNVPFAIADATNLTEAGYVGEDVENIIVSLLQNADHDIERAQR 180 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 181 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKIIEGTLAAVPPKGGRKHPQQEFLQV 240 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF +P DLL Sbjct: 241 DTSNILFICGGAFTGLEEIIENRIGQRMIGFGATMKPKKALDRWELIKEVQPEDLLKYGM 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L++ ILT ++ LI QY++L + +G+ L FT ++ +A Sbjct: 301 IPEFVGRLPMIAPLHELSEDALVQILTQPKNALIKQYQKLFEMDGVKLKFTHGALYKIAS 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 +A S GAR L+ ++E L DI + + S V+I+ + V H Sbjct: 361 LAQAQKS-----GARGLRAILESALLDIMYDTPSQHNISEVIINEDVVEKH 406 >gi|15834703|ref|NP_296462.1| ATP-dependent protease ATP-binding subunit [Chlamydia muridarum Nigg] gi|270284869|ref|ZP_06194263.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia muridarum Nigg] gi|270288896|ref|ZP_06195198.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia muridarum Weiss] gi|301336248|ref|ZP_07224450.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia muridarum MopnTet14] gi|13878445|sp|Q9PLM1|CLPX_CHLMU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|7190113|gb|AAF38960.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX [Chlamydia muridarum Nigg] Length = 419 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y++GQ+ AK+ +++A+ N ++R + L D + N+LL+GPTG G Sbjct: 67 LTPKEIKRHIDSYVVGQERAKKTISVAVYNHYKRIRALMQDKQVSYGKSNVLLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 60/211 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG+ + +Y Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238 Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312 +NT++ILFI GAF S DL Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTDRDRLLAKVETEDLIAFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GRF V+ + L + ILT+ + ++ QY EL E + L F ++++ A+A Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFAEENVKLIFEKEALYAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L ++E +L D+ F Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384 >gi|307127779|ref|YP_003879810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 670-6B] gi|306484841|gb|ADM91710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae 670-6B] Length = 410 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|322377849|ref|ZP_08052338.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M334] gi|321281272|gb|EFX58283.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus sp. M334] Length = 410 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERTER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|262340994|ref|YP_003283849.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272331|gb|ACY40239.1| ATP-dependent protease ATP-binding subunit [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 401 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 54/213 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+FLDE DKI +++ I VS EGVQ+ LL ++EGS ++ K I Sbjct: 178 GIIFLDEIDKISRKNNNPSITRDVSGEGVQQALLKILEGSVINVPPQGGRKHPDQKMIPI 237 Query: 292 NTDHILFIASGAF----------------------HVSRPAD--------------LLPE 315 NT++ILFIA G F V + + L+PE Sbjct: 238 NTENILFIAGGTFDGIEKIVSDRIEKIPIGFLTQERVKKNNNYLKNIISTDLKNFGLIPE 297 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 + GRFPV +L LNK+ + IL + ++ LI QY++L + I ++ T+ ++D +AD Sbjct: 298 LIGRFPVITYLHPLNKNMLKRILLEPKNALIKQYQKLFNMDNISMNITDKALDVIADKTF 357 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 VG +GAR L+T E++ D + Q Sbjct: 358 ----QVG-LGARGLRTFCEKIFLDYMYDIEKTQ 385 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 8/107 (7%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTGVGKTA 68 S LD++++ Q +AK+ +++A+ N ++R + ++E + NILL+G TG GKT Sbjct: 67 SFLDKHVVEQNEAKKILSVAVYNHYKRILHSKNQKNENEDVEIEKSNILLIGNTGTGKTL 126 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL---VDVAIN 112 ++R +++L PF + T TE GYVG +VE I+ L VD IN Sbjct: 127 LARSISKLLKVPFAIADATTLTEAGYVGEDVESILTKLLQSVDYDIN 173 >gi|289168392|ref|YP_003446661.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus mitis B6] gi|288907959|emb|CBJ22799.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus mitis B6] Length = 410 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|182684524|ref|YP_001836271.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae CGSP14] gi|221232330|ref|YP_002511483.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae ATCC 700669] gi|238691178|sp|B2IR87|CLPX_STRPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763866|sp|B8ZLT1|CLPX_STRPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|182629858|gb|ACB90806.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae CGSP14] gi|220674791|emb|CAR69364.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pneumoniae ATCC 700669] Length = 410 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 64 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 123 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 178 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 179 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 238 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 239 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 299 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 359 IERKT-----GARGLRSIIEETMLDVMF 381 >gi|113970829|ref|YP_734622.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. MR-4] gi|114048054|ref|YP_738604.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. MR-7] gi|123131263|sp|Q0HTK8|CLPX_SHESR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123324884|sp|Q0HHA2|CLPX_SHESM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|113885513|gb|ABI39565.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp. MR-4] gi|113889496|gb|ABI43547.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Shewanella sp. MR-7] Length = 426 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL++ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386 >gi|157826114|ref|YP_001493834.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia akari str. Hartford] gi|166215196|sp|A8GPK1|CLPX_RICAH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157800072|gb|ABV75326.1| ATP-dependent protease ATP-binding subunit [Rickettsia akari str. Hartford] Length = 425 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I + L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGVDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QYK+ + + L +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYKKQFELDDTELVIENSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E +L D + ++L+++ V I E V Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|260590037|ref|ZP_05855950.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] gi|331084353|ref|ZP_08333457.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA] gi|260539549|gb|EEX20118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Blautia hansenii DSM 20583] gi|330401617|gb|EGG81198.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 6_1_63FAA] Length = 475 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R + AD+ D E+ N+L++GPTG G Sbjct: 122 APHKIKASLDEYVIGQEKAKKVMSVAVYNHYKR--VFADMNDDIEIEKSNMLMIGPTGSG 179 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LARL P + T TE GY+G ++E ++ L+ A N V + Sbjct: 180 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 233 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 57/232 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EGS + G ++N Sbjct: 233 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEIEVPVGANSKNAMVPLTTVN 292 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 293 TKNILFICGGAFPDLEEIIKERLNKTASIGFQADLKDKYDHDNTLLEKVTVDDIKKFGMI 352 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L LN+ IL + ++ ++ QY++L+ + + L+F + +++A+AD+ Sbjct: 353 PEFLGRLPIIFTLTGLNRDMLVEILKEPKNAILKQYQKLLALDEVKLEFEDGALEAIADM 412 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 A+ ++ GAR L+ ++E + DI + D V+I EY+ H G Sbjct: 413 ALEKHT-----GARALRAILEEYMLDIMYEIPKDDSIGEVIITKEYIE-HTG 458 >gi|206900318|ref|YP_002250811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus thermophilum H-6-12] gi|226706584|sp|B5YE53|CLPX_DICT6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|206739421|gb|ACI18479.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus thermophilum H-6-12] Length = 411 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R + + + + E+ NILL+GPTGVGK Sbjct: 61 PHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMKSKITEDVEIQKSNILLIGPTGVGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNA 164 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG+ + ++ I Sbjct: 174 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLRIVEGTIANVPPQGGRKHPYQEFIQI 233 Query: 292 NTDHILFIASGAFH-----------VSR-----------------------PADLL---- 313 NT ILFIA G+F VS P DL+ Sbjct: 234 NTKDILFIAGGSFEGIEKIVEKRLDVSSIGFGAQIEPKNRKSLTQILNHIIPEDLIKFGM 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GRFPV L+ L++ ILT+ ++ L+ QYK L+ EG+ +DFT++++ ++ Sbjct: 294 IPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSIEGVEIDFTDEALRSIVK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L+ VME ++ D+ + +L K I E V Sbjct: 354 EALEKAT-----GARGLRAVMEELMLDLMYELPNLGIKRFTITPELV 395 >gi|237752785|ref|ZP_04583265.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] gi|229376274|gb|EEO26365.1| ATP-dependent protease ATP-binding subunit [Helicobacter winghamensis ATCC BAA-430] Length = 416 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 SP+E+ + LD Y+IGQ+ AK+ ++A+ N ++R A + D E+ NILL+GPTG Sbjct: 63 SPKELKAVLDEYVIGQEKAKKVFSVAVYNHYKRVLQGAAIDDDDTEITKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+ P + T TE GYVG +VE I+ L+ A ++++++ Sbjct: 123 GKTLMAQTLAKFLNIPIAICDATSLTEAGYVGEDVENILTRLLQEAGGDIQKAQK 177 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 178 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQEFIQI 237 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314 +T ILFI GAF H + P DL +P Sbjct: 238 DTKDILFICGGAFDGLKDIIERRLGGNTLGFHNKKGKKKELEYVLEFVEPDDLVSYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L+ + K IL ++ L QYK+L +G L F ++++ +A +A Sbjct: 298 ELIGRLHMFATLEEITKEAMIEILQKPKNALTKQYKKLFSLDGAQLTFKDEALQEIAGLA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ + GAR L+ +ME ++ D+ + +L VVI E V Sbjct: 358 ISRKT-----GARGLRAIMEEIMLDVMYELPELSGYEVVITKEAV 397 >gi|218440072|ref|YP_002378401.1| ATP-dependent protease ATP-binding subunit ClpX [Cyanothece sp. PCC 7424] gi|226706581|sp|B7KBH7|CLPX_CYAP7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|218172800|gb|ACK71533.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanothece sp. PCC 7424] Length = 447 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 15/123 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------ELMPKNI 56 PREI LD Y+IGQ +AK+ +++A+ N ++R +D++ EL NI Sbjct: 83 PREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRL---SDIQAKRTGTGATDDPVELQKSNI 139 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 LL+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E Sbjct: 140 LLMGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEE 199 Query: 117 SRR 119 ++R Sbjct: 200 AQR 202 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF----------------HVSRPAD------------------------ 311 +T +ILFI GAF RPA+ Sbjct: 263 DTSNILFICGGAFVGLDKIVEQRLGKKSMGFIRPAEGTSKEKWSADLLKQLEPDDLVKFG 322 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV L L++ ILT + L+ QY++L+K + + L+F +++ A+A Sbjct: 323 MIPEFVGRIPVMASLDPLDEDALIAILTQPRNALVKQYQKLLKMDNVQLEFKSEAVRAIA 382 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ ++ + Sbjct: 383 QEAYRRKT-----GARALRGIVEELMLEVMY 408 >gi|94988378|ref|YP_596479.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS9429] gi|94992260|ref|YP_600359.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS2096] gi|166215210|sp|Q1JC93|CLPX_STRPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215211|sp|Q1JM77|CLPX_STRPC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|94541886|gb|ABF31935.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus pyogenes MGAS9429] gi|94545768|gb|ABF35815.1| ATP-dependent endopeptidase clp ATP-binding subunit clpX [Streptococcus pyogenes MGAS2096] Length = 409 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L SD ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|251772220|gb|EES52790.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptospirillum ferrodiazotrophum] Length = 434 Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI LD+YIIGQ+ AK+ +++A+ N ++R + D EL NI+++GPTG G Sbjct: 68 MKPSEIKRALDQYIIGQERAKKILSVAVYNHYKRARANKISEDVELQKGNIIMLGPTGTG 127 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 128 KTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENIILKLLQAA 172 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 61/222 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGS 290 +GI+++DE DKI + I VS EGVQ+ LL LVEG+ + ++ Sbjct: 181 WGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLVEGTVANVPPQGGRKHPHQEFIQ 240 Query: 291 INTDHILFIASGAF-----------------------------------HVSRPADLL-- 313 ++T +ILFI GAF +RP DLL Sbjct: 241 VDTTNILFICGGAFVGLDSIISQRLARKTMGFGAESKPAQDRILSGKLFMEARPDDLLKY 300 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFPV L+ L++ F ILT ++ L+ Q+++L E + L FTED++ A+ Sbjct: 301 GIIPEFIGRFPVMAILEDLDEEAFLQILTQPKNALVKQFEKLFAIEKVKLRFTEDALRAV 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 A A + GAR L+ ++E V+ D+ + S S+L E Sbjct: 361 AHKAYTQKT-----GARGLRAILEEVMLDLMYDIPSLSNLSE 397 >gi|319440921|ref|ZP_07990077.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium variabile DSM 44702] Length = 424 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA--------DLRDELMPKNILLVG 60 P I LD Y+IGQ DAKR +A+A+ N ++R + + D EL NIL++G Sbjct: 62 PAAITRFLDEYVIGQDDAKRTLAVAVYNHYKRTRAESSDATARRSDDEVELSKSNILMLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 PTGSGKTYLAQSLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 171 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 181 GIIYVDELDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPNQEFIQF 240 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T ++LFI SGAF P DL + Sbjct: 241 DTKNVLFIVSGAFAGLEKVISDRRGKKGVGFGAEIRGKADEEKDPFRYVEPEDLVKFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV H+ L+ ILT+ +++L+ QY+ L + +G+ L F ED++ A+A+ Sbjct: 301 PELIGRLPVITHVGHLDSDALVKILTEPKNSLVRQYQRLFEMDGVRLSFEEDALRAIAEK 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A++ + GAR L++++E +L + FS D V+I + VR Sbjct: 361 ALDRGT-----GARGLRSIVESILLPVMFSIPDDTGTGEVIITGDSVR 403 >gi|225861402|ref|YP_002742911.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae Taiwan19F-14] gi|225727587|gb|ACO23438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae Taiwan19F-14] Length = 402 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 56 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373 >gi|326501208|dbj|BAJ98835.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 637 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP-------------ADLRD-- 49 +P+EI LD+Y+IGQ AK+ +++A+ N ++R Q L AD D Sbjct: 223 TPKEISKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGCSDGEADGEDNV 282 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 283 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLSV 342 Query: 110 A 110 A Sbjct: 343 A 343 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGS-----------I 291 G+V++DE DKI + I VS EGVQ+ LL ++EG+ V+ I Sbjct: 353 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 412 Query: 292 NTDHILFIASG----------------AFHVSRPA------------------------- 310 +T ILFI G + P Sbjct: 413 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRASMRTSGISSAQVTSSLLESVESG 472 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +LT+ ++ L Q+K+L + L FT+ Sbjct: 473 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQFKKLFSMNNVKLHFTDA 532 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A+ N+ GAR L+T++E +L D + D + IDA Sbjct: 533 ALRIIAQKAMCKNT-----GARGLRTILENILMDSMYEIPDTKSGEKRIDA 578 >gi|317124507|ref|YP_004098619.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Intrasporangium calvum DSM 43043] gi|315588595|gb|ADU47892.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Intrasporangium calvum DSM 43043] Length = 425 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 PREI L+ Y++GQ AK+++A+A+ N ++R Q + E + NILL+GPTG Sbjct: 64 PREIFEFLEHYVVGQDAAKKSLAVAVYNHYKRIQAGEGPKREDDHVDIAKSNILLIGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 SGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAF----------------------HVSR----------PADLL-----P 314 +T ++LFI GAF H ++ P DLL P Sbjct: 240 DTTNVLFIVGGAFSGLEKIIESRSGRKGLGFGQPLHTAKDLGDSFADVMPEDLLKFGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L++ ILT + L+ QY+++ +G+ L+FT+D+++A+AD A Sbjct: 300 EFIGRLPVLTTLGPLDQHALVNILTAPRNALVKQYQKMFAIDGVELEFTDDALEAVADQA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + L T GAR L+ +ME VL + F Sbjct: 360 L-LRGT----GARGLRAIMEEVLLPVMF 382 >gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium mortiferum ATCC 9817] Length = 412 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62 +P+EI +LD Y+IGQ + K+ +A+A+ N ++R A+ DE L N+LL+GPT Sbjct: 62 LTPKEIKEKLDEYVIGQDETKKILAVAVYNHYKRILDNAERTDENAVELQKSNVLLIGPT 121 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 122 GSGKTLLAQTLARSLKVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 169 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 179 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPQGGRKHPNQELIEI 238 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PADL----- 312 +T +ILFI GAF +S+ P DL Sbjct: 239 DTSNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEISKEKEERVGEVFAKVLPEDLVRQGI 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ L+ L++ ILT+ ++ ++ QYK+L EG+ L+FT +++ +A Sbjct: 299 IPELVGRLPIITTLQDLDEEALIKILTEPKNAIVKQYKKLFDIEGVELEFTPEALKKIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 +A+ IGAR L+ ++E+ + ++ + SD VVI E V Sbjct: 359 LALERR-----IGARGLRAIIEQTMLELMYEVPSDESIHKVVIGEEAV 401 >gi|332200133|gb|EGJ14206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae GA47368] Length = 401 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|307704381|ref|ZP_07641296.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK597] gi|307708344|ref|ZP_07644811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis NCTC 12261] gi|307615790|gb|EFN94996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis NCTC 12261] gi|307622066|gb|EFO01088.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK597] Length = 401 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|169834164|ref|YP_001694974.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pneumoniae Hungary19A-6] gi|168996666|gb|ACA37278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus pneumoniae Hungary19A-6] Length = 402 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 56 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 115 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 170 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 171 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 230 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 231 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 290 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 291 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 350 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 351 IERKT-----GARGLRSIIEETMLDVMF 373 >gi|332978058|gb|EGK14796.1| ATP-dependent Clp protease ATP-binding subunit [Desmospora sp. 8437] Length = 423 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD Y+IGQ+ AK+++++A+ N ++R D EL NI+++GPTG GKT Sbjct: 67 PQEINAILDEYVIGQEQAKKSLSVAVYNHYKRINSSHKSDDVELQKSNIIMIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 127 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 178 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 179 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILF+ GAF + P DLL Sbjct: 239 DTGNILFVCGGAFDGLEPIIKRRIGKKVIGFGADSNTDDLKQGEYLKMVLPEDLLRFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT+ ++ L+ QY++L++ + + L F ED++ A+AD Sbjct: 299 PEFVGRLPVISTLEPLDQDALVRILTEPKNALVKQYQKLLEMDDVKLTFEEDALKAIADE 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E ++ D+ F Sbjct: 359 AIRRNT-----GARGLRAIIESIMLDVMF 382 >gi|220928260|ref|YP_002505169.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium cellulolyticum H10] gi|254763841|sp|B8I8F6|CLPX_CLOCE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219998588|gb|ACL75189.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium cellulolyticum H10] Length = 431 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+EI LD+Y++GQ AKR++++A+ N ++R + +D++ EL NI+++GPTG G Sbjct: 64 PKEIKEILDQYVVGQDAAKRSLSVAVYNHYKR--INSDVKTTDIELQKSNIVMLGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTFLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLRLIQAA 166 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 58/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTLASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF----------------------HVSR------------PADLL---- 313 +T +ILFI GAF S+ P DLL Sbjct: 236 DTTNILFICGGAFDGIDKIIQNRIGKKSLGFGAKIESSKDKDVGQLLKDILPQDLLKFGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+K ILT+ ++ L+ QY++L + + ++L+ +++++ +A+ Sbjct: 296 IPEFVGRLPIVVTLQSLDKKALVQILTEPKNALVKQYQKLFEMDDVLLEIQDEALEHIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 A+ N+ GAR L+ ++E + + + + + +I E + H Sbjct: 356 KAIERNT-----GARGLRAILEEAMLGVMYDIPSMTNVEKCIIGKEVIAEH 401 >gi|12322572|gb|AAG51286.1|AC027035_9 CLP protease regulatory subunit CLPX, putative [Arabidopsis thaliana] Length = 650 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------------QQLPADLRD 49 +P+EI LD+++IGQ AK+ +++A+ N ++R Q + D Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLVLSLIHSAQPIDDDDNV 310 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LARL PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 311 ELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTV 370 Query: 110 A 110 A Sbjct: 371 A 371 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%) Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287 TV ++Q + GIV++DE DKI + I VS EGVQ+ LL L+EG+ V+ Sbjct: 369 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 427 Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311 + I+T ILFI GAF V R D Sbjct: 428 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 487 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L+PE GRFP+ V L +L + +L + ++ L QYK+L Sbjct: 488 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 547 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + L FTE +++ ++ A+ V + GAR L+ ++E +L + F D ++ Sbjct: 548 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 602 Query: 413 VIDA 416 IDA Sbjct: 603 RIDA 606 >gi|307705961|ref|ZP_07642786.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK564] gi|307620471|gb|EFN99582.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK564] Length = 401 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 7/116 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAER 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 170 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 229 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 230 DTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 289 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 290 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 349 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 350 IERKT-----GARGLRSIIEETMLDVMF 372 >gi|117921101|ref|YP_870293.1| ATP-dependent protease ATP-binding subunit ClpX [Shewanella sp. ANA-3] gi|166215205|sp|A0KYL8|CLPX_SHESA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|117613433|gb|ABK48887.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella sp. ANA-3] Length = 426 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+ + LD Y+IGQ AK+ +++A+ N ++R P D EL NILL+GPTG G Sbjct: 67 TPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPKD-GVELGKSNILLIGPTGSG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT ++ LAR PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 126 KTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 179 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF HV P DL Sbjct: 240 DTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISQTLSQVEPEDLVKY 299 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L++ IL++ ++ L QY L + EG+ L+F ED++ A+ Sbjct: 300 GLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAI 359 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A++ + GAR L++++E +L D + Sbjct: 360 AHKAMSRKT-----GARGLRSIVEGILLDTMY 386 >gi|139473950|ref|YP_001128666.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes str. Manfredo] gi|166215214|sp|A2RF17|CLPX_STRPG RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|134272197|emb|CAM30443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus pyogenes str. Manfredo] Length = 409 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|227538075|ref|ZP_03968124.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33300] gi|300772704|ref|ZP_07082574.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33861] gi|227242151|gb|EEI92166.1| ATP-dependent protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33300] gi|300761007|gb|EFK57833.1| ATP-dependent Clp protease ATP-binding subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 416 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD+Y+IGQ DAK+ +++A+ N ++R D D E+ N+++VG TG GKT Sbjct: 65 PLEIKQHLDQYVIGQDDAKKVISVAVYNHYKRLNQKVDKDDIEIEKSNLIIVGETGTGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A++ PF V+ T TE GYVG +VE I+ L+ A Sbjct: 125 LLAKTVAKILNVPFSIVDATVLTEAGYVGEDVESILTRLLQAA 167 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 60/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ K ++ Sbjct: 177 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPDQKMIAV 236 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 NT +ILFI GAF P DL + Sbjct: 237 NTSNILFICGGAFDGIQKKIANRLRTQTVGYKMREDEQEIDLNNLYKYITPQDLKTFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV +L L+K ILT+ ++ LI QYK+L EGI L+F ++ + D Sbjct: 297 PELIGRLPVLTYLNPLDKETLLSILTEPKNALIKQYKKLFNYEGIELEFDKNVYQFIVDK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYVR 420 A +GAR L+ + E ++ D F S D+ + T+ I +Y + Sbjct: 357 ADEFK-----LGARGLRAICEAIMLDAMFEIPTSREDITDNTLHITLDYAK 402 >gi|15617074|ref|NP_240287.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681826|ref|YP_002468212.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471528|ref|ZP_05635527.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131711|sp|P57548|CLPX_BUCAI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763838|sp|B8D9Q3|CLPX_BUCA5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|25296054|pir||E84985 hypothetical protein clpX [imported] - Buchnera sp. (strain APS) gi|10039139|dbj|BAB13173.1| ATP-dependent clp protease ATP-binding subunit clpX [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624669|gb|ACL30824.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087366|gb|ADP67446.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 429 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+ + P EI LD Y+IGQ K+ +++A+ N ++R D EL NILL+ Sbjct: 64 KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311 NT +ILFI +GAF VS+ P D Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L + IL ++ LI QY+ L + E + L+F +SI + Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+N N+ GAR L++++E +L +I + Sbjct: 364 AKKAMNKNT-----GARGLRSIIEGILLNIMY 390 >gi|315226598|ref|ZP_07868386.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia denticolens DSM 10105] gi|315120730|gb|EFT83862.1| ATP-dependent Clp protease ATP-binding subunit [Parascardovia denticolens DSM 10105] Length = 424 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 59/215 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS--------- 290 GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S GS Sbjct: 193 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVASVPVKGSRKHEEQEMV 251 Query: 291 -INTDHILFIASGAF---------------------------------HVSRPADL---- 312 INT ILFI GAF + P DL Sbjct: 252 QINTSDILFICGGAFVGLEDIIRHRLGKRETGFGTDWSSQEKSSDEILSLVTPDDLTEFG 311 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 LPE GR PV + SL D ILT+ + L+ Q+ +++ +G+ L FT+ +++++A Sbjct: 312 LLPEFIGRMPVLATMSSLTVDDLVSILTEPANALVKQFAKILAVDGVELVFTDQALESIA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 +++ + GAR L+++MER+LED + D Sbjct: 372 QRSLDRGT-----GARGLRSIMERILEDAMYQVPD 401 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 17/119 (14%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------PADLRD-EL 51 P I LD Y+IGQ +AK+A+++A+ N ++R L +DL + E+ Sbjct: 65 PSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVEI 124 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+LL+GPTG GKT ++ LAR+ PF V+ T TE GYVG +VE I++ L+ A Sbjct: 125 SKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 183 >gi|56808899|ref|ZP_00366608.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Streptococcus pyogenes M49 591] gi|209559238|ref|YP_002285710.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes NZ131] gi|238066660|sp|B5XL03|CLPX_STRPZ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|209540439|gb|ACI61015.1| ATP-dependent Clp protease ATP-binding subunit clpX [Streptococcus pyogenes NZ131] Length = 409 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L SD ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLKTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|50914054|ref|YP_060026.1| ATP-dependent protease ATP-binding subunit ClpX [Streptococcus pyogenes MGAS10394] gi|61211417|sp|Q5XCM0|CLPX_STRP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|50903128|gb|AAT86843.1| ATP-dependent clp protease ATP-binding subunit [Streptococcus pyogenes MGAS10394] Length = 409 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P+E++ L++Y++GQ AKRA+++A+ N ++R D+ L NIL++GPTG G Sbjct: 64 PKELLDVLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A N+ R R Sbjct: 124 KTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAER 177 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 178 GIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF SR D L+P Sbjct: 238 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ LN SD ILT+ + L+ QY+ L+ +G+ L+F + +++A+A A Sbjct: 298 EFIGRLPVVAALEQLNTSDLIRILTEPRNALVKQYQALLSYDGVELEFDKAALEAIATKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI F Sbjct: 358 IERKT-----GARGLRSIIEETMLDIMF 380 >gi|219682381|ref|YP_002468765.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254763839|sp|B8D805|CLPX_BUCAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|219622114|gb|ACL30270.1| ATP-dependent protease ATP-binding subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 429 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+ + P EI LD Y+IGQ K+ +++A+ N ++R D EL NILL+ Sbjct: 64 KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311 NT +ILFI +G F VS+ P D Sbjct: 244 NTSNILFICAGTFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L + IL ++ LI QY+ L + E + L+F +SI + Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+N N+ GAR L++++E +L +I + Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390 >gi|134302068|ref|YP_001122037.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. tularensis WY96-3418] gi|134049845|gb|ABO46916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Francisella tularensis subsp. tularensis WY96-3418] Length = 417 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ L +L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLVKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|311087864|gb|ADP67943.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 429 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+ + P EI LD Y+IGQ K+ +++A+ N ++R D EL NILL+ Sbjct: 64 KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311 NT +ILFI +GAF VS+ P D Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L + IL ++ LI QY+ L + E + L+F +SI + Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCTPKNALIKQYQTLFELENVKLEFNAESIQLI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+N N+ GAR L++++E +L +I + Sbjct: 364 AKKAMNKNT-----GARGLRSIIEGILLNIMY 390 >gi|289523085|ref|ZP_06439939.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503628|gb|EFD24792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 427 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 5/110 (4%) Query: 3 LTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNIL 57 +T NF P EI S LD+Y++GQ+ AK+ +++A+ N ++R +D E+ NIL Sbjct: 66 MTQNFVLPKPSEIKSYLDQYVVGQEYAKKVLSVAVHNHYKRIFKGKKGKDDVEVQKSNIL 125 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ Sbjct: 126 LLGPTGCGKTLLAQTLAQMLNVPFAIADATTLTEAGYVGEDVENILVRLL 175 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG S+V K G + Sbjct: 188 GIVYIDEIDKIARKSYSPSITRDVSGEGVQQGLLRLLEGTVSNVPPKGGRKHPYQDFIQV 247 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF +P DL+ Sbjct: 248 DTSNILFICGGAFDGIENIIAKRINKRVIGFGGDIIGKKVEASWKILKEVQPEDLMMYGF 307 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L+ L++ IL + +++L+ QY+EL EG+ L+FTE ++ A+A Sbjct: 308 IPEFIGRIPVIVPLEGLHEESLVHILLEPKNSLVKQYQELFSYEGVELEFTEAALKAIAH 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A + GAR L+++ME ++ DI + ++ Sbjct: 368 QAQERKT-----GARGLRSIMENLMLDIMYELPNI 397 >gi|22298053|ref|NP_681300.1| ATP-dependent protease ATP-binding subunit [Thermosynechococcus elongatus BP-1] gi|46576560|sp|Q8DLI1|CLPX_THEEB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|22294231|dbj|BAC08062.1| ATP-dependent protease ATPase subunit [Thermosynechococcus elongatus BP-1] Length = 440 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD----ELMPKNILLVGPTG 63 PR+I LD++++GQ +AK+ +A+A+ N ++R L +D R EL NILL+GPTG Sbjct: 81 PRQIKEFLDKHVVGQHEAKKILAVAVYNHYKRLSLLDSDQRGDDNVELQKSNILLIGPTG 140 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT ++ LA+L PF + T TE GYVG +VE I+ L+ A V E++R Sbjct: 141 SGKTLSAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQNANMDVEEAQR 196 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 61/224 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 197 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQDCIQI 256 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R AD+L Sbjct: 257 DTTNILFICGGAFVGLEKTIEQRVGKKAMGFVRDGEPLPKEKRSADILKQLEPHDLVKYG 316 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L+ L+ + ILT ++ L+ QY++LM+ + + L F +++A+A Sbjct: 317 MIPEFIGRIPVVAVLEPLDVAALADILTQPQNALLKQYQKLMRMDSVELRFEPAAVEAIA 376 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A + GAR L+ ++E ++ D+ + S DL+E T+ Sbjct: 377 QEAYRRKT-----GARALRAIVEEIMLDVMYELPSRKDLRECTI 415 >gi|308177633|ref|YP_003917039.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter arilaitensis Re117] gi|307745096|emb|CBT76068.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrobacter arilaitensis Re117] Length = 430 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 13/115 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD------------LRD-ELMPKN 55 PREI L Y+IGQ++AKRA+++A+ N ++R D L D E+ N Sbjct: 64 PREIFDSLQEYVIGQENAKRALSVAVYNHYKRIHGNQDHGPVAALTNEDPLDDVEVSKSN 123 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I+L+GPTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 IMLIGPTGCGKTYLAQSLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAA 178 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 188 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQDFIQL 247 Query: 292 NTDHILFIASGAFH-----VS---------------------------RPADLL-----P 314 +T +ILFI +GAF +S RP DLL P Sbjct: 248 DTTNILFIVAGAFAGLEEIISSRAGQKGIGFGAPLTALKSATASYSDVRPEDLLKFGLIP 307 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ L+K +LT+ ++ L+ QY+++ + +G+ L F + +++A+A++A Sbjct: 308 EFIGRLPVITTVEHLDKDALVRVLTEPKNALLKQYQKMFQMDGVALSFDQSALEAIAELA 367 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E L + F Sbjct: 368 I-----ARETGARGLRSILEETLGGVMF 390 >gi|259507909|ref|ZP_05750809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium efficiens YS-314] gi|259164404|gb|EEW48958.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium efficiens YS-314] Length = 422 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLR-----DELMPKNILLV 59 P EI + LD+Y++GQ AKR +++A+ N ++R +Q+ R EL+ NILL+ Sbjct: 63 PSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILLL 122 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 173 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ + G + Sbjct: 183 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 242 Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312 +T +ILFI +GAF V+ RP DL Sbjct: 243 DTTNILFIVAGAFSGLEKIIGERRGKKGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGL 302 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ ++L+ QYK L + + +L FT+D+++A+AD Sbjct: 303 IPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIAD 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +A+ + GAR L+ ++E +L I + D + T VVI E R Sbjct: 363 LALERKT-----GARGLRAILEEILVPIMYDIPDRDDVTEVVITGEVAR 406 >gi|311086778|gb|ADP66859.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 429 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+ + P EI LD Y+IGQ K+ +++A+ N ++R D EL NILL+ Sbjct: 64 KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311 NT +ILFI +GAF VS+ P D Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKEKKQKKSEDFLLKQVEPEDLIKF 303 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L + IL ++ LI QY+ L + E + L+F +SI + Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+N N+ GAR L++++E +L +I + Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390 >gi|310821762|ref|YP_003954120.1| ATP-dependent CLP protease, ATP-binding subunit CLPx [Stigmatella aurantiaca DW4/3-1] gi|309394834|gb|ADO72293.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 426 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-----------ELMPK 54 +P EI + LD Y+IGQ AK+ +++A+ N ++R Q+ PA EL Sbjct: 61 TPTEIKAFLDDYVIGQDQAKKVLSVAVYNHYKRIYQKKPAARPRPGVKAQGSEDVELQKS 120 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ A Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 176 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 65/216 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI + G+ +R EGVQ+ LL ++EG+ + +Y Sbjct: 186 GIVYIDEIDKIARK--GDTPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 243 Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313 ++T +ILFI GAFH ++ P DL+ Sbjct: 244 QVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFGARITHREERSVGELLAMAEPEDLMKF 303 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L + D +ILT ++ L+ QY++L + E + L F+++S+ A+ Sbjct: 304 GMIPEFIGRLPMVATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVME----RVLEDISF 402 A A+ NS GAR L+ +ME V+ D+ F Sbjct: 364 AREAMRRNS-----GARGLRAIMEDAMLEVMYDVPF 394 >gi|294786959|ref|ZP_06752213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia denticolens F0305] gi|294485792|gb|EFG33426.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Parascardovia denticolens F0305] Length = 462 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 59/222 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-GS--------- 290 GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S GS Sbjct: 231 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVASVPVKGSRKHEEQEMV 289 Query: 291 -INTDHILFIASGAF---------------------------------HVSRPADL---- 312 INT ILFI GAF + P DL Sbjct: 290 QINTSDILFICGGAFVGLEDIIRHRLGKRETGFGTDWSSQEKSSDEILSLVTPDDLTEFG 349 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 LPE GR PV + SL D ILT+ + L+ Q+ +++ +G+ L FT+ +++++A Sbjct: 350 LLPEFIGRMPVLATMSSLTVDDLVSILTEPANALVKQFAKILAVDGVELVFTDQALESIA 409 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +++ + GAR L+++MER+LED + D ++ + V Sbjct: 410 QRSLDRGT-----GARGLRSIMERILEDAMYQVPDREDVSQV 446 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 17/119 (14%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------PADLRD-EL 51 P I LD Y+IGQ +AK+A+++A+ N ++R L +DL + E+ Sbjct: 103 PSRIRRFLDSYVIGQDEAKKALSVAVYNHYKRINLRWEDSADRLERSWSHQGSDLDEVEI 162 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+LL+GPTG GKT ++ LAR+ PF V+ T TE GYVG +VE I++ L+ A Sbjct: 163 SKSNVLLLGPTGTGKTYLASTLARIMDVPFTIVDATTLTEAGYVGDDVETILQRLIQAA 221 >gi|296139186|ref|YP_003646429.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Tsukamurella paurometabola DSM 20162] gi|296027320|gb|ADG78090.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tsukamurella paurometabola DSM 20162] Length = 425 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDE---LMPKNILLVGPTG 63 P EI LD Y+IGQ AKR +A+A+ N ++R Q D R E L NIL++GPTG Sbjct: 64 PVEIRDFLDNYVIGQDSAKRNLAVAVYNHYKRIQAGERKDARGESVELAKSNILMLGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 CGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 170 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 62/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 180 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 239 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 240 DTTNVLFIVAGAFAGLEKVVGDRIGKRGLGFGTEVRSKAEVDTVDHFADVLPEDLIKFGL 299 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY+ L + +G+ L+F ED++ A+AD Sbjct: 300 IPEFIGRLPVIASVSNLDKESLVSILSEPKNALVKQYERLFEMDGVELEFDEDALGAIAD 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ L T GAR L+ +ME VL + F S D+ + VV+ E VR Sbjct: 360 QAI-LRGT----GARGLRAIMEEVLNPVMFDIPSRDDVAK--VVVTGETVR 403 >gi|254468834|ref|ZP_05082240.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta proteobacterium KB13] gi|207087644|gb|EDZ64927.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [beta proteobacterium KB13] Length = 417 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 67/100 (67%), Gaps = 3/100 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI +L+ +IIGQ AK+++++A+ N ++R L ++ D ++ NILL+GPTG GKT Sbjct: 66 PQEIFDQLNHHIIGQNHAKKSLSVAVYNHYKR--LGSNSDDIKIAKSNILLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +++ LA PF+ + T TE GYVG +VE I++ L+ Sbjct: 124 LLAQSLASFLNVPFVIADATTLTEAGYVGEDVENIMQKLL 163 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ I Sbjct: 176 GIIYIDEVDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFVQI 235 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------- 311 +T +ILFI GAF +V+ D Sbjct: 236 DTSNILFICGGAFDGLEKVIQRRLESNSIGFGANVASKNDSRTTYQLLKETESEDLVKFG 295 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L+ IL + ++ LI QYK+L + EG+ L+F + ++ +A Sbjct: 296 LIPEFIGRLPVISALEPLDIDALTKILIEPKNALIKQYKKLFEIEGVELEFRDQALIHIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A++ N+ GAR L++++E L+D+ F SD + V+ID + + Sbjct: 356 KKALDRNT-----GARGLRSILEETLQDVMFDIPSDKTIEKVIIDEKTI 399 >gi|163781837|ref|ZP_02176837.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159883057|gb|EDP76561.1| ATP-dependent protease ATP-binding subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 413 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DK VA+ SG ++R EGVQ+ LL ++EG+ + ++ Sbjct: 178 GIVYIDEIDK-VAKKSGINPSITRDVSGEGVQQSLLKIIEGTVANVPPQGGRKHPHQEFI 236 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 I+T ILFI GAF + P DL+ Sbjct: 237 QIDTTDILFICGGAFVGLEEIIKHRIGKSTMGFESSIKKVEEEDNVVALVEPDDLIKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + D IL + ++ L+ QYK+L + +G+ L+FTE+++ +A+ Sbjct: 297 IPEFVGRLPVITTLDELTQEDLVRILVEPKNALVKQYKKLFEIDGVELEFTEEALKEIAN 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ ++E V+ +I F +++ K V+ID + V Sbjct: 357 EAIRRKT-----GARGLRAILEDVMTEIMFEIPSMRDVKKVIIDKDTV 399 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 4/104 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTG 63 +P I S LD Y+IGQ+ AK+ +++A+ N ++R ++ DL E+ NILL+GPTG Sbjct: 62 TPERIKSILDEYVIGQERAKKVLSVAVYNHYKRIKAKEAGLDLDGVEVEKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 122 SGKTLMAKTLAKILNVPFAIADATSLTEAGYVGEDVENVLTRLL 165 >gi|302386738|ref|YP_003822560.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] gi|302197366|gb|ADL04937.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] Length = 433 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ +AK+ +++A+ N ++R + ++ NIL++GPTG GK Sbjct: 65 MKPKEIKAFLDDYVIGQDNAKKVLSVAVYNHYKRITSRKKMDVDVQKSNILMLGPTGSGK 124 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 TYLAQTLAKVLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 168 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 YGI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 177 YGIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELLQ 236 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 INT +ILFI GAF + P DL Sbjct: 237 INTTNILFICGGAFDGLEKIIERRLSAGSIGFNAEIVDKNKTDIDDLLKKTLPQDLVKFG 296 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ V L+ L++ ILT+ ++ L+ QY++L + + + L+ T ++++ +A Sbjct: 297 LIPEFIGRVPITVSLELLDREALVKILTEPKNALVKQYQKLFELDDVKLELTREAVERIA 356 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++AV + GAR L+++ME V+ ++ + Sbjct: 357 ELAVERKT-----GARGLRSIMESVMMELMY 382 >gi|255321827|ref|ZP_05362977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter showae RM3277] gi|255300931|gb|EET80198.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter showae RM3277] Length = 412 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 2/107 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTG 63 N +P+E+ + LD Y+IGQ AK+ ++ + N ++R ++ D E+ NILLVGPTG Sbjct: 61 NLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGEIEDDTEISKSNILLVGPTG 120 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 121 SGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 167 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 177 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 236 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILF+ GAF R D L+P Sbjct: 237 DTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDKENLLDALESDDLVHFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + + D ILT+ ++ ++ QY++L + L F ++++ +A +A Sbjct: 297 ELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLFAIDRANLKFDDEALKEVARLA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME V+ DI + +L VVI E V Sbjct: 357 IERKT-----GARGLRSIMEEVMTDIMYELPELAGYDVVITKEVV 396 >gi|237785949|ref|YP_002906654.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium kroppenstedtii DSM 44385] gi|259491254|sp|C4LJV6|CLPX_CORK4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|237758861|gb|ACR18111.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 422 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 10/110 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 P +IV L Y+IGQ AKR +A+A+ N ++R Q AD D E+ NIL++G Sbjct: 65 PSQIVDFLGDYVIGQDAAKRTLAVAVYNHYKRIQ--ADENDHHKSDDDIEIAKSNILMLG 122 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 PTGSGKTYLAQTLARMLDVPFAMTDATSLTEAGYVGEDVENILLKLLQAA 172 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 182 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQL 241 Query: 292 NTDHILFIASGAF--------------------HVS-------------RPADL-----L 313 +T ++LFI +GAF +VS +P DL + Sbjct: 242 DTKNVLFIVAGAFAGLEKVIGERRGKQGLGFGANVSSKEENELDAFSYVQPEDLVKFGLI 301 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV + L++ +LT+ +++L+ QY L+ +G+ L E +++A+AD Sbjct: 302 PEFIGRLPVVATVNDLDREALVRVLTEPKNSLVKQYSRLLDMDGVTLTMEEGALNAIADK 361 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A+ + GAR L+ ++E +L + F D ++ T VVI E V Sbjct: 362 AIERGT-----GARGLRAILEEILGPVMFEVPDSEDVTEVVISEECV 403 >gi|71892028|ref|YP_277758.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796134|gb|AAZ40885.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 419 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 16/116 (13%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------L 51 KLT +P EI + LD Y+IGQ+ K+ +A+A+ N ++R LR+E L Sbjct: 61 KLTKYPTPCEIKNYLDDYVIGQEYTKKVLAVAVYNHYKR------LRNEKTCINSNGTKL 114 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTG GKT ++ LAR PF + T TE GYVG +VE +++ L+ Sbjct: 115 FKSNILLIGPTGSGKTLLAETLARFLNVPFSISDATTLTEAGYVGEDVENVVQKLL 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG++ + ++ + Sbjct: 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTTAAVPPQGGRKHPQQEFIQV 242 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T +ILFI GAF P DL+ Sbjct: 243 DTTNILFICGGAFFGLNQIIQQRTTNKRTIGFRVLENNDTTKNIEHSLLTQIEPEDLIKF 302 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L + + IL + ++ LI QY+ L +G+ L+F+E S+ A+ Sbjct: 303 GLIPEFVGRLPIVSTLDELKEKELIKILKEPKNALIKQYEMLFHIDGVKLEFSETSLTAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A N+ IGAR L+ ++E +L D+ + Sbjct: 363 AK-----NAMKKKIGARGLRAILENILLDVMY 389 >gi|58584809|ref|YP_198382.1| ATP-dependent protease ATP-binding subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311625|sp|Q5GS84|CLPX_WOLTR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|58419125|gb|AAW71140.1| ATP-dependent protease Clp, ATPase subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 426 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ ++ + Sbjct: 183 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 242 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T++ILFI GAF H +P DL+ Sbjct: 243 DTNNILFICGGAFEGLNKIIEARKKGTSVGFGADISQSKEQKKKNTLHDVQPEDLIKFGL 302 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ D +L + + LI QYK L+ + L+F++++I A+A+ Sbjct: 303 IPEFVGRVPITAVLDELDHEDLVHVLIEPRNALIKQYKALLAFSKVNLEFSDEAISAIAE 362 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 A++ + GAR L+ ++E +L D+ ++A + + T+VI E V L Sbjct: 363 KAMSYKT-----GARMLRAILESLLLDVMYTAGNGGFEGSTIVITKEMVEL 408 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P +I L ++++GQ+ A+ +++A+ N + Q A E+ N++L+GPTG GKT Sbjct: 71 PEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMAQFNAISDVEIEKSNVMLIGPTGSGKT 130 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA+++ PF + T TE GYVG +VE ++ L+ A V +++R Sbjct: 131 LLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVAKAQR 182 >gi|42782921|ref|NP_980168.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus ATCC 10987] gi|42738848|gb|AAS42776.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus cereus ATCC 10987] Length = 76 Score = 86.3 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 51/58 (87%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 + +F+PR+IV +LD+YIIGQ+DAK+AVA+ALRNR+RR +L +LRDE+ PKNIL++G Sbjct: 14 MHLHFTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIG 71 >gi|311086201|gb|ADP66283.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 429 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLV 59 K+ + P EI LD Y+IGQ K+ +++A+ N ++R D EL NILL+ Sbjct: 64 KINYLPKPHEIKKHLDNYVIGQNYTKKVLSVAVYNHYKRLYNFNKKTDSVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ LA+L PF + T TE GYVG +VE +I+ L+ Sbjct: 124 GPTGSGKTLLAQTLAKLLDVPFTITDATTLTEAGYVGEDVENVIQKLL 171 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 184 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLIEGTLASIPPQGGRKHPQQEFLQV 243 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PAD---- 311 NT +ILFI +GAF VS+ P D Sbjct: 244 NTSNILFICAGAFSELSKIVSKRLDAGTEIGFKANIKGKKQKKSEDFLLKQVEPEDLIKF 303 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR P+ L L + IL ++ LI QY+ L + E + L+F +SI + Sbjct: 304 GLIPEFIGRLPIITILNKLTEDALVNILCKPKNALIKQYQTLFELENVKLEFNAESIQLI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+N N+ GAR L++++E +L +I + Sbjct: 364 AKKAINKNT-----GARGLRSIIEGILLNIMY 390 >gi|217967476|ref|YP_002352982.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus turgidum DSM 6724] gi|226706585|sp|B8E291|CLPX_DICTD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|217336575|gb|ACK42368.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dictyoglomus turgidum DSM 6724] Length = 411 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG+ + ++ I Sbjct: 174 GIVYIDEIDKISRKSENPSITRDVSGEGVQQALLRIVEGTIANVPPQGGRKHPYQEFIQI 233 Query: 292 NTDHILFIASGAFH-----------VSR-----------------------PADLL---- 313 NT ILFIA G+F VS P DL+ Sbjct: 234 NTKDILFIAGGSFEGIEKIVEKRLDVSNIGFGAQIEPKNRKSLTQILNHIIPEDLIKFGM 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GRFPV L+ L++ ILT+ ++ L+ QYK L+ EG+ ++FT++++ A+ Sbjct: 294 IPEFVGRFPVVAVLEPLSEEALLKILTEPKNALVKQYKALLSMEGVEINFTDEALKAIVK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A++ + GAR L+ VME ++ D+ + +L K + E V Sbjct: 354 EAIDKAT-----GARGLRAVMEELMLDLMYELPNLGIKKFTVTPELV 395 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R + + + + E+ N+LL+GPTGVGK Sbjct: 61 PHEIKNFLDQYVIGQERAKKILSVAVYNHYKRIFMRSKITEDVEIQKSNVLLIGPTGVGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TLLAETLAKFLKVPFAIADATTLTEAGYVGEDVENILLRLIQNA 164 >gi|67923460|ref|ZP_00516937.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501] gi|67854695|gb|EAM49977.1| ClpX, ATPase regulatory subunit [Crocosphaera watsonii WH 8501] Length = 444 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P EI LD Y+IGQ +AK+ +++A+ N ++R L + E L NILL+GP Sbjct: 82 PMEIKDYLDEYVIGQDEAKKVLSVAVYNHYKRLSLVQGKKGEQDQDNIELQKSNILLMGP 141 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 TGSGKTLLAQTLAQILEVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 199 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 63/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 259 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R ADL+ Sbjct: 260 DTSNILFICGGAFVGLDRVIEQRIGKKSMGFVRPGEGQSKEERTADLMQRVEPDDLVKFG 319 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L + ILT + L+ QY++L+ + + L+F+ +++ A+A Sbjct: 320 MIPEFVGRIPVMAALNPLTEETLIAILTKPRNALVKQYQKLLNMDNVELEFSPEAVKAIA 379 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A + GAR L+ ++E ++ D+ + S D+Q+ +I E V Sbjct: 380 QEAYRRKT-----GARALRGIVEELMLDVMYELPSRKDVQK--CMITGEMV 423 >gi|291295951|ref|YP_003507349.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Meiothermus ruber DSM 1279] gi|290470910|gb|ADD28329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Meiothermus ruber DSM 1279] Length = 398 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 53/228 (23%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG--- 289 +Q E GI+++DE DKI AR S N VS EGVQ+ LL ++EG+ +V + G Sbjct: 162 VQAAEK-GIIYIDEIDKI-ARKSENPSLTRDVSGEGVQQALLKIIEGTVANVPPQGGRKH 219 Query: 290 ------SINTDHILFIASGAF----------------HVSRPAD---------------- 311 ++NT +ILFI GAF +RP Sbjct: 220 PHQEFIALNTKNILFILGGAFDGLERIVQSRVDQNPIGFTRPKKTEEKPEVIPEDLVRFG 279 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV V L++L++ ILT+ + LI QY+EL++ EGI L FT ++ +A Sbjct: 280 LIPEFVGRMPVMVQLEALDEEALVRILTEPRNALIRQYQELLRMEGIELRFTPGALREIA 339 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L+ V+E+ + ++ F K VV D ++ Sbjct: 340 RRALKRGT-----GARGLRAVIEKAMVELMFELPTSGIKEVVFDLPHL 382 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI S LD+Y+IGQ+ K+ +++A+ N ++R P E+ N+LL+GPTG GKT Sbjct: 60 PAEIKSFLDQYVIGQELPKKTLSVAVYNHYKRLLHP---EAEVQKSNVLLIGPTGTGKTL 116 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 117 LAETLARMLDVPFAIADATTLTEAGYVGEDVENVLLRLLQAA 158 >gi|261366991|ref|ZP_05979874.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Subdoligranulum variabile DSM 15176] gi|282571109|gb|EFB76644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Subdoligranulum variabile DSM 15176] Length = 451 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 65/104 (62%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P EI + LD+Y+IGQ AK+ +A+++ N ++R + EL N+L++GP+G GK Sbjct: 90 LTPAEIKAGLDQYVIGQDAAKKVLAVSVYNHYKRILSGQESSVELQKSNVLMLGPSGTGK 149 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 150 TLLAQTLAKMLNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 193 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I V EGVQ+ LL +VEG S+V G I Sbjct: 203 GIIYIDEIDKITRKSENPSITRDVGGEGVQQALLKIVEGTVSNVPPNGGRKHPQQEFIQI 262 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 NT +ILFI GAF P DL Sbjct: 263 NTKNILFICGGAFDGLEKLIQKRTDNASMGFGSQLRTTLDKDETRQKLLKKVEPDDLVRF 322 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L L++ +LT+ +++++ QYKEL+ + L FT+ ++ A+ Sbjct: 323 GLIPELIGRLPVVTVLDPLDEDALVRVLTEPKNSIVRQYKELLHLDNAELVFTDAALHAI 382 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A V S GAR L++V+E +L I + SD V IDA+ V Sbjct: 383 AKKTVERKS-----GARGLRSVVEDLLIPIMYDIPSDASITKVTIDADTV 427 >gi|160881660|ref|YP_001560628.1| ATP-dependent protease ATP-binding subunit [Clostridium phytofermentans ISDg] gi|160430326|gb|ABX43889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium phytofermentans ISDg] Length = 482 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GIVF+DE DKI + S N VS E VQ+ LL L+EGS V G +INT Sbjct: 239 GIVFIDEIDKIAKKKSTNNRDVSGESVQQGLLKLLEGSDVEVPVGATSKNAMVPLTTINT 298 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 299 KNILFICGGAFPDLDKIIKARLNKQSSIGFSADLKDKYDDDPNLLQKVAVDDLREFGMIP 358 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+SL K IL + ++ ++ QYK+L+ + + L+F + +++A+A+ A Sbjct: 359 EFLGRLPVVYSLESLTKDMLTKILIEPKNAILKQYKKLLALDEVDLNFDQGALEAIAEKA 418 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E + DI + Sbjct: 419 MEKKT-----GARALRAIIEEFMLDIMY 441 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 15/157 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM------PKNILLVGP 61 +P I + LD ++IGQ AK+ +++A+ N ++R D LM N+L++GP Sbjct: 121 APHIIKASLDEFVIGQNHAKKVISVAVYNHYKRVAKLKDTEHPLMEDVDIEKSNMLMIGP 180 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDE 121 TG GKT + + LARL P + T TE GY+G +VE ++ L+ A N V ++ Sbjct: 181 TGSGKTYLVKTLARLLNVPLAITDATSLTEAGYIGDDVESVLSKLLAAADNDVEKA---- 236 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 EQ + +E +D + K +T+N R+V + ++ G Sbjct: 237 --EQGIVFIDE--IDKIAKKKSTNN-RDVSGESVQQG 268 >gi|71905873|ref|YP_283460.1| ATP-dependent protease ATP-binding subunit [Dechloromonas aromatica RCB] gi|71845494|gb|AAZ44990.1| ClpX, ATPase regulatory subunit [Dechloromonas aromatica RCB] Length = 360 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 17/188 (9%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P EIV L ++IGQ DAK+ +A+A+ +RR A+ EL NILL+GPTG GK Sbjct: 29 LKPSEIVRRLSDHVIGQDDAKKTLAVAIYAHFRRMANIAEDSVELTKSNILLIGPTGTGK 88 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121 T + LAR+ PF+ + T + +VG +E I+ L+D A + + ++R DE Sbjct: 89 TLLCETLARILDVPFVTADATSLAQTQFVGDEIEAILHRLLDRANDDLALAQRGIVFVDE 148 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDI 181 V + ++ E R + A E +L+DG + ID +++I I Sbjct: 149 VDKLKAVGGESRATSGESVQHALLKIMEGAPVRLKDG----RHID------TTNI--LFI 196 Query: 182 PGGASVGI 189 GGA VG+ Sbjct: 197 CGGAFVGL 204 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-SINTDHILFIASGA 303 GIVF+DE DK+ A G S E VQ LL ++EG+ V K G I+T +ILFI GA Sbjct: 142 GIVFVDEVDKLKAV-GGESRATSGESVQHALLKIMEGAPVRLKDGRHIDTTNILFICGGA 200 Query: 304 F----HV---------------------------SRPADLL-----PEIQGRFPVRVHLK 327 F H+ +P DLL PE GR P+ L Sbjct: 201 FVGLDHILTKTHTFGFISTAEGDDQKILERLNARVKPTDLLEFGLIPEFAGRLPIVTRLH 260 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L++ ILT+ ++ + Q++ ++ +G+ L + +A++A+ + GAR Sbjct: 261 DLSQDMLVRILTEPKNAIYKQFQAMLAADGVDLQVEPNVFRQMAELAIEYKA-----GAR 315 Query: 388 RLQTVMERVLEDISFSASD 406 L+ + E ++ D+ ++ D Sbjct: 316 SLRGIFEEMMVDVMYAVPD 334 >gi|172058155|ref|YP_001814615.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium sibiricum 255-15] gi|229889852|sp|B1YJW0|CLPX_EXIS2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|171990676|gb|ACB61598.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Exiguobacterium sibiricum 255-15] Length = 421 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + L+ Y+IGQ+ AK+++++A+ N ++R D EL NI+++GPTG GKT Sbjct: 64 PHEIRATLNDYVIGQEKAKKSLSVAMYNHYKRINAGGRADDVELSKSNIVMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTMARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 57/225 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T +ILFI GAF + P DL + Sbjct: 236 DTTNILFIVGGAFDGIDQSIKRRLGKKVIGFGNDSENRNLTQKEILAAALPEDLQKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ QYK++++ + + LDFTED++ +A + Sbjct: 296 PEFIGRLPVMATLEPLDEEALVQILTKPKNALVKQYKKMLQLDDVELDFTEDALVEIAKL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAE 417 A+ + GAR L++++E + DI F ++ V+I AE Sbjct: 356 AIERKT-----GARGLRSIIEETMLDIMFEIPSREDIAKVIITAE 395 >gi|282883080|ref|ZP_06291680.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus lacrimalis 315-B] gi|300813661|ref|ZP_07093983.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297057|gb|EFA89553.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus lacrimalis 315-B] gi|300512203|gb|EFK39381.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 409 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 6/113 (5%) Query: 4 TFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNIL 57 T NF P +I LD Y++ Q+ AK+A+A+A+ N ++R + + EL NIL Sbjct: 52 TENFDLPKPAQIKHILDSYVVKQESAKKALAVAVYNHYKRINSNKKIENSDIELQKSNIL 111 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++GPTG GKT +++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 112 MIGPTGSGKTLLAQTLAKLLHVPFAICDATTLTEAGYVGEDVENIILKLIQNA 164 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 174 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPNQEFIQV 233 Query: 292 NTDHILFIASGAF-------------------------HVSRPA-------------DLL 313 +T +ILFI GAF ++ R A L+ Sbjct: 234 DTTNILFIVGGAFDGLEKIIEQRTMKSSMGFEAAIYDKNIERKAILKKVETEDLLKFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV + L+ L++ ILT ++ L+ QYKELMK + + L F +D++ +A Sbjct: 294 PELIGRLPVTITLEELDEDALVEILTKPKNALVKQYKELMKLDNVDLIFDDDALRDIAKK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ V+E + +I + Sbjct: 354 AIEKKA-----GARGLRGVIENTIMNIMY 377 >gi|56751592|ref|YP_172293.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus elongatus PCC 6301] gi|81301335|ref|YP_401543.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus elongatus PCC 7942] gi|61211388|sp|Q5N1P7|CLPX_SYNP6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|93141243|sp|O34126|CLPX_SYNE7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|56686551|dbj|BAD79773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus elongatus PCC 6301] gi|81170216|gb|ABB58556.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus elongatus PCC 7942] Length = 449 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 5/116 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD--ELMPKNILLVGPTG 63 P +I LD ++IGQ +AK+ +++A+ N ++R QQ + + E+ NILL+GPTG Sbjct: 89 PHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSNILLIGPTG 148 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LA+L PF + T TE GYVG +VE I+ L+ VA + E++R Sbjct: 149 CGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQR 204 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 60/221 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T +ILFI GAF H+ P DL Sbjct: 265 DTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME-PEDLVQF 323 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ ILT+ L+ QY++LM + + L+F +D+I+A+ Sbjct: 324 GLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAI 383 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 A A + GAR L+ ++E ++ ++ + Q+ T Sbjct: 384 AREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVT 419 >gi|269123535|ref|YP_003306112.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptobacillus moniliformis DSM 12112] gi|268314861|gb|ACZ01235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptobacillus moniliformis DSM 12112] Length = 410 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGP 61 FN P++I +LD YIIGQ+ AK+ +++A+ N ++R + D E+ NILL+GP Sbjct: 55 FNLLKPKQIKEKLDEYIIGQEQAKKVLSVAVYNHFKRLSILDKVDNDIEMQKSNILLIGP 114 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ P + T TE GYVG +VE ++ L+ A Sbjct: 115 TGSGKTLLAQTLAKILDVPLAIADATTITEAGYVGDDVENVLLKLIKAA 163 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG SSV + G I Sbjct: 173 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKIVEGTISSVPPQGGRKHPNQEMIEI 232 Query: 292 NTDHILFIASGAF-----------------------------------HVS----RPADL 312 +T +ILFI GAF HV R + Sbjct: 233 DTTNILFIVGGAFEGLESKIKRRLNKKQIGFGLNLDKNEDLDDMTIFEHVLPEDIRKFGI 292 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L LNK ILT ++ +I QYK+ + EG+ L F ED+++ +A+ Sbjct: 293 IPELIGRLPVITALSELNKEALVSILTKPKNAIIKQYKKYFEIEGVELIFEEDAVEEIAE 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ IGAR L++++E + D+ + ++ K VVI + + Sbjct: 353 LALKRK-----IGARGLRSIIENTMLDLMYEIPSKEDIKKVVITKDMI 395 >gi|76789445|ref|YP_328531.1| ATP-dependent protease ATP-binding subunit [Chlamydia trachomatis A/HAR-13] gi|237805056|ref|YP_002889210.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis B/TZ1A828/OT] gi|123758566|sp|Q3KKY9|CLPX_CHLTA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|76167975|gb|AAX50983.1| ClpX [Chlamydia trachomatis A/HAR-13] gi|231273356|emb|CAX10271.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia trachomatis B/TZ1A828/OT] Length = 419 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +++A+ N ++R + L D + N+LL+GPTG G Sbjct: 67 LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 60/211 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG+ + +Y Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPNQEYI 238 Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312 +NT++ILFI GAF S DL Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GRF V+ + L + ILT+ + ++ QY EL + E + L F ++++ A+A Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L ++E +L D+ F Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384 >gi|222824391|ref|YP_002575965.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX [Campylobacter lari RM2100] gi|222539612|gb|ACM64713.1| ATP-dependent ClpXP protease, ATP-binding subunit ClpX [Campylobacter lari RM2100] Length = 411 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 4/117 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPT 62 + +P+E+ + LD+Y+IGQ AK+ ++ + N ++R ++L D EL NILLVGPT Sbjct: 59 DITPKELKAYLDKYVIGQDRAKKIFSVGVYNHYKRL-FRSNLEDDDTELAKSNILLVGPT 117 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LAR P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 118 GSGKTLLAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQK 174 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 54/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+F+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 175 GIIFIDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQDFIQI 234 Query: 292 NTDHILFIASGAFH-----VSR--------------------------PADL-----LPE 315 +T +ILF+ GAF + R P DL +PE Sbjct: 235 DTTNILFVCGGAFDGISDIIKRKLGDNVMGFFSDDKKSEKEALLQKLEPDDLVHFGLIPE 294 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 + GR V L+ L++ ILT+ ++ +I QY++L + + L F +D++ +A +++ Sbjct: 295 LIGRLHVLASLEELDEESMVRILTEPKNAIIKQYQKLFAIDNVELKFEDDALREIAKLSL 354 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + GAR L++++E ++ D+ F + ++VI E ++ Sbjct: 355 ERKT-----GARGLRSIIEEMMVDLMFDLPEYNGYSIVITKEVIK 394 >gi|237803135|ref|YP_002888329.1| ATP-dependent protease ATP-binding subunit ClpX [Chlamydia trachomatis B/Jali20/OT] gi|231274369|emb|CAX11164.1| ATP-dependent Clp protease, ATP-binding component [Chlamydia trachomatis B/Jali20/OT] Length = 419 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y+IGQ+ AK+ +++A+ N ++R + L D + N+LL+GPTG G Sbjct: 67 LTPKEIKRHIDSYVIGQERAKKTISVAVYNHYKRIRALMQDKQVGYGKSNVLLLGPTGSG 126 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQAA 171 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 60/211 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSV-----------STKYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG+ S +Y Sbjct: 181 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTVANIPPKGGRKHPSQEYI 238 Query: 290 SINTDHILFIASGAF----------------HVSRPADL--------------------- 312 +NT++ILFI GAF S DL Sbjct: 239 RVNTENILFIVGGAFVNLDKIIAKRLGRTTIGFSEETDLAVTNRDHLLAKVETEDLIAFG 298 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GRF V+ + L + ILT+ + ++ QY EL + E + L F ++++ A+A Sbjct: 299 MIPEFIGRFNCIVNCEELTLDELVEILTEPANAIVKQYTELFEEENVKLIFEKEALYAIA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L ++E +L D+ F Sbjct: 359 QKAKQAKT-----GARALGMILENLLRDLMF 384 >gi|188590512|ref|YP_001921997.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum E3 str. Alaska E43] gi|251778366|ref|ZP_04821286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238691974|sp|B2UX12|CLPX_CLOBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|188500793|gb|ACD53929.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum E3 str. Alaska E43] gi|243082681|gb|EES48571.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 429 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ+ AK+++++A+ N ++R D EL NILL+GPTG GKT Sbjct: 63 PNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313 NT +ILFI GAF + +R P DLL Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKHEKDIGKLLKEIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+K ILT ++ L+ QYK+L + + + L+F +++ ++A+ Sbjct: 295 IPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E ++ +I + SD Q V+I E ++ Sbjct: 355 EAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIK 398 >gi|187933551|ref|YP_001887075.1| ATP-dependent protease ATP-binding subunit ClpX [Clostridium botulinum B str. Eklund 17B] gi|238691649|sp|B2TPB8|CLPX_CLOBB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|187721704|gb|ACD22925.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium botulinum B str. Eklund 17B] Length = 429 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ+ AK+++++A+ N ++R D EL NILL+GPTG GKT Sbjct: 63 PNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPTGSGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 LLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNA 165 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 175 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 234 Query: 292 NTDHILFIASGAF--------HVSR--------------------------PADLL---- 313 NT +ILFI GAF + +R P DLL Sbjct: 235 NTSNILFICGGAFDGVDKIIENRTRKSSMGFGAQIQGKHEKDIGKLLKEIMPGDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L+SL+K ILT ++ L+ QYK+L + + + L+F +++ ++A+ Sbjct: 295 IPEFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E ++ +I + SD Q V I E ++ Sbjct: 355 EAIERKT-----GARGLRAIIEEMMTEIMYEIPSDEQITKVTITEECIK 398 >gi|25028847|ref|NP_738901.1| ATP-dependent protease ATP-binding subunit [Corynebacterium efficiens YS-314] gi|46576594|sp|Q8FN57|CLPX_COREF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|23494133|dbj|BAC19101.1| putative ATP-dependent Clp protease ATP-binding subunit [Corynebacterium efficiens YS-314] Length = 426 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLR-----DELMPKNILLV 59 P EI + LD+Y++GQ AKR +++A+ N ++R +Q+ R EL+ NILL+ Sbjct: 66 PSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNILLL 125 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 126 GPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 176 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ + G + Sbjct: 186 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 245 Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312 +T +ILFI +GAF V+ RP DL Sbjct: 246 DTTNILFIVAGAFSGLEKIIGERRGKKGLGFGVEVASKKDEEKEDIFKDVRPEDLVKFGL 305 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ ++L+ QYK L + + +L FT+D+++A+AD Sbjct: 306 IPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDALEAIAD 365 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVR 420 +A+ + GAR L+ ++E +L I + D + T VVI E R Sbjct: 366 LALERKT-----GARGLRAILEEILVPIMYDIPDRDDVTEVVITGEVAR 409 >gi|332708808|ref|ZP_08428779.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya majuscula 3L] gi|332352350|gb|EGJ31919.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lyngbya majuscula 3L] Length = 448 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 11/122 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNIL 57 PREI LD ++IGQ++AK+ +++A+ N ++R L EL NIL Sbjct: 82 PREIKRYLDDHVIGQEEAKKVLSVAVYNHYKRLSLLQSKAQGQGQGIIDDGIELQKSNIL 141 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 L+GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA V E+ Sbjct: 142 LIGPTGCGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEA 201 Query: 118 RR 119 +R Sbjct: 202 QR 203 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 204 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 263 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R AD+L Sbjct: 264 DTSNILFICGGAFVGLDKVVEQRLGKRSMGFIQPGENQSKEKRTADILRHLQPDDLVKFG 323 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ ++ L++ ILT+ ++ L+ QY +L+K + + L+F D+I ALA Sbjct: 324 MIPEFIGRIPMVAVIEPLDEEALMAILTEPKNALVKQYMKLLKMDNVNLEFMPDAIRALA 383 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ ++ + Sbjct: 384 QEAYRRKT-----GARALRGIVEELMLEVMY 409 >gi|307721395|ref|YP_003892535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas autotrophica DSM 16294] gi|306979488|gb|ADN09523.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas autotrophica DSM 16294] Length = 414 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+FLDE DK+ I VS EGVQ+ LL ++EGSSV+ ++ +I Sbjct: 178 GIIFLDEVDKVSRMSENRSITRDVSGEGVQQALLKIIEGSSVNIPPKGGRKHPNQEFTAI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF H + D L+P Sbjct: 238 DTTNILFICGGAFDGLEEILKRKQGENVLGFGHDKKTKDEKKPTFDMVEPDDLVHYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ L + + D ILT+ +++L+ QYK+L + + L+F ED++ A+A A Sbjct: 298 ELVGRLPIIASLNEITEDDMVRILTEPKNSLVKQYKKLFAIDEVELNFEEDALRAIAQKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E + DI + + V+I E + Sbjct: 358 IKRKT-----GARGLRAILEESMIDIMYELPEYSGYEVMITKEVI 397 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 +P+E+ + L YIIGQ+ A++ +++A+ N ++R AD E+ NILL+GPTG Sbjct: 62 MTPKELDAFLGEYIIGQERARKLLSVAVYNHYKRIFKMHNAADDDTEIAKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR+ P + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAA 168 >gi|282891305|ref|ZP_06299807.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498802|gb|EFB41119.1| hypothetical protein pah_c050o083 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 415 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P+EI LD YIIGQ +AK+ +++A+ N ++R + + E N+LL GPTG Sbjct: 59 LKPKEIKERLDEYIIGQDNAKKTISVAVYNHYKRIRSANTDNNAIEFNKSNVLLFGPTGS 118 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT I++ LA + PF + T TE GYVG +VE II L+ A Sbjct: 119 GKTLIAKTLANILDVPFTIADATTLTEAGYVGEDVENIILRLLQAA 164 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKINRTTANVSITRDVSGEGVQQALLKIVEGTIANVPPKGGRKHPNQEYIKV 233 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 NT++ILFI GAF ++ +DLL Sbjct: 234 NTENILFIVGGAFVNMEKIVAKRLGRSTIGFTTKDKETVDPTKKSDLLAKVEPEDLIQFG 293 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GRF + L SD IL+ ++ + Q+ + + EG+ L FTE+++ A+A Sbjct: 294 MIPEFVGRFNSIANCNELTVSDLVSILSKPKNAIAKQFMAMFEMEGVNLQFTEEALAAIA 353 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E ++ D+ F SD +VID + V Sbjct: 354 QKAIEAGT-----GARALRMILENIMRDLMFDVPSDPTISEIVIDYDVV 397 >gi|157804081|ref|YP_001492630.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia canadensis str. McKiel] gi|166215198|sp|A8EZR2|CLPX_RICCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157785344|gb|ABV73845.1| ATP-dependent protease ATP-binding subunit [Rickettsia canadensis str. McKiel] Length = 425 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--PADLRDELMPKNILLVGPTGVG 65 +P++I + L+ YI+GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICTILNDYIVGQDQAKKILAVAVYNHYKRLEYIQSGNNEVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFSMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF----------------------HVSRPAD-----------------L 312 +T +ILFI GAF +++R + L Sbjct: 236 DTSNILFICGGAFMGIDSIITARTNNSSIGFAANININREKNNSEILQALEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + + L +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELIIENSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ GAR L++++E +L D + ++L++ V I E V Sbjct: 356 KAL-----AKKTGARGLRSILEHLLLDSMYKVAELKKHRVTITKEVV 397 >gi|67458611|ref|YP_246235.1| ATP-dependent protease ATP-binding subunit [Rickettsia felis URRWXCal2] gi|75536923|sp|Q4UMY8|CLPX_RICFE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|67004144|gb|AAY61070.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Rickettsia felis URRWXCal2] Length = 425 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 70/114 (61%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I + L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICAILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITARTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + LD E I+A A Sbjct: 296 IPEFIGRLPIVTTLDELDKDALITILTKPKNAIVKQYQKQFE-----LDDAELVIEAAAL 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E +L D + ++L+++ V I E V Sbjct: 351 EAIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|296125910|ref|YP_003633162.1| ATPase AAA [Brachyspira murdochii DSM 12563] gi|296017726|gb|ADG70963.1| ATPase AAA-2 domain protein [Brachyspira murdochii DSM 12563] Length = 604 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 11/104 (10%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62 +P+EIV+ELD+ +IGQ +AK+A+A+ R +++P NIL++GPT Sbjct: 239 LTPKEIVAELDKTVIGQDEAKKALAVHAYLHCLRISGNKEIP-------FRSNILMIGPT 291 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 GVGKT + + LA + G PF + +VT TE GYVG +VE ++ +L Sbjct: 292 GVGKTYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNL 335 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 58/224 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290 +GIVFLDE DKI D+ S + VQ LL ++ G + ++G Sbjct: 348 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 407 Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT +ILFI GAF + D Sbjct: 408 LMNTKNILFIFGGAFVGLDDIIKMRLKGENSLGFGSNAVINKLQKDRILSQVDVKDIEKY 467 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR P+ V L L K + + ILT T+ + I++Y E ++ G L T ++I+ + Sbjct: 468 GMIPEFIGRIPIIVTLNELTKENLKDILTKTKESPIIKYTEFFRSIGKKLTVTSEAINFI 527 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 D A ++N +GAR L++++E + +I F+ ++ T+ + Sbjct: 528 VDKASSMN-----MGARSLKSIVETAMVNILFNLDGIKGNTLTL 566 >gi|302390302|ref|YP_003826123.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermosediminibacter oceani DSM 16646] gi|302200930|gb|ADL08500.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Thermosediminibacter oceani DSM 16646] Length = 421 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD+Y+IGQ+ AK+ +++A+ N ++R D EL NI+++GPTG GKT Sbjct: 64 PSEIKEILDQYVIGQEKAKKILSVAVYNHYKRINSSVKTDDVELQKSNIIMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH--------------------------------VSR--PADLL---- 313 +T +ILFI GAF +S+ P DLL Sbjct: 236 DTTNILFICGGAFEGIEKIIANRIGKKSIGFGAEIRSKEEKNVGELLSQIMPEDLLKFGM 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V L +L++ IL + ++ L+ QY++L + + + L+FT++++ +A Sbjct: 296 IPEFVGRVPIIVTLDALDEQALIRILKEPKNALVKQYQKLFEMDNVQLEFTDEALQVIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A+N + GAR L+ ++E V+ D+ + S SD+ + V Sbjct: 356 EALNRKT-----GARGLRAILEEVMMDVMYEIPSRSDITKCVV 393 >gi|116621145|ref|YP_823301.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Solibacter usitatus Ellin6076] gi|116224307|gb|ABJ83016.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Solibacter usitatus Ellin6076] Length = 424 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 4/114 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P E+ LD+Y+IGQ+ K+ +A+A+ N +R + +R+ EL NILL+GPTG G Sbjct: 67 PLEVKEFLDQYVIGQEATKKKLAVAVYNHCKRIHM-NRMRNSEVELQKSNILLIGPTGTG 125 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF V+ T TE GYVG +VE II L+ A V++ ++ Sbjct: 126 KTLMAQTLAKILDVPFAIVDATTLTEAGYVGEDVENIILKLLQAADGDVQKCQQ 179 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 65/218 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 180 GIIYIDEIDKICRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 239 Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309 +T +ILFI GAF ++P Sbjct: 240 DTTNILFICGGAFVGLEKVIARRTGKKSMGFLQEEEKGTGIRNTGVSGRRDIDLLTQAQP 299 Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DL+ PE GR PV L+ L++S ILT ++ +I QY++L + E + L F++ Sbjct: 300 IDLIKFGFIPEFIGRLPVSAVLEDLDRSALIQILTKPKNAIIKQYQKLFEFENVRLKFSD 359 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ +A+AD+A++ +GAR L+ ++E ++ D+ + Sbjct: 360 EATEAIADLAMDRK-----VGARGLRMILEDLMLDLMY 392 >gi|113474440|ref|YP_720501.1| ATP-dependent protease ATP-binding subunit ClpX [Trichodesmium erythraeum IMS101] gi|123057080|sp|Q118P6|CLPX_TRIEI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|110165488|gb|ABG50028.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Trichodesmium erythraeum IMS101] Length = 449 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILLVG 60 PREI + LD ++IGQ++ K+ +++A+ N ++R + EL NILL+G Sbjct: 84 PREIKNYLDAHVIGQEEGKKVLSVAVYNHYKRLSFLEAKKSGKSSQDEVELQKSNILLIG 143 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LA L PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 144 PTGCGKTLLAQTLADLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLEVDEAQR 202 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 60/213 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF-------------------HVS------------------RPADL-- 312 +T +ILFI GAF H S P DL Sbjct: 263 DTSNILFICGGAFVGLEKIVDQRIGKKSMGFIHQSGDSYQVKEKKVVDLMKQMEPNDLVK 322 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE+ GR P+ ++ L++ ILT ++ L+ QY++L++ + + L+F ED++ A Sbjct: 323 FGLIPELIGRIPMVAVVEPLDEETLMAILTKPQNALVKQYQKLLRMDNVKLEFEEDAVRA 382 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A A + GAR L+ ++E ++ D+ + Sbjct: 383 IAKEAFRRKT-----GARALRGIVEELMLDVMY 410 >gi|118618989|ref|YP_907321.1| ATP-dependent protease ATP-binding subunit ClpX [Mycobacterium ulcerans Agy99] gi|166214791|sp|A0PU31|CLPX_MYCUA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|118571099|gb|ABL05850.1| ATP-dependent CLP protease ATP-binding subunit ClpX [Mycobacterium ulcerans Agy99] Length = 426 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI L+ Y+IGQ AKR +A+A+ N ++R Q D EL NIL++GPT Sbjct: 64 PVEIREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKSHDSRCEAVELTKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIYERVGKRGLGFGAEVRSKAEIDTTDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYTRLFEMDGVELEFTDDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + GAR L+ +ME VL + + Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMY 385 >gi|303328062|ref|ZP_07358501.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. 3_1_syn3] gi|302861888|gb|EFL84823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. 3_1_syn3] Length = 429 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 6/108 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62 SP+EI LD Y+IGQ +AK+ +++A+ N ++R L D+ EL NILLVGP+ Sbjct: 63 LSPQEIKDRLDEYVIGQHEAKKILSVAVHNHYKRVFYADALGHDV--ELEKSNILLVGPS 120 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 GSGKTLLAKTLAKVLRVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 NT +ILFI GAF P DL Sbjct: 238 NTGNILFIVGGAFVGLDKIVESRMSGGSMGFGAKVRSSKETPLAELLEKIHPQDLVQFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ H+ L++ D ILT+ ++ L+ QY++L + + + L FT +++ A+A Sbjct: 298 IPEFVGRIPIITHVDELDEPDLVRILTEPKNALVRQYQKLFELDHVTLRFTPNALKAIAA 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ VME+++ DI F Sbjct: 358 RAIERKT-----GARGLRNVMEKIMLDIMF 382 >gi|257063883|ref|YP_003143555.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia heliotrinireducens DSM 20476] gi|256791536|gb|ACV22206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Slackia heliotrinireducens DSM 20476] Length = 444 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI L +++GQ AKRA+A+A+ N ++R L + EL N+LL+GPTG G Sbjct: 88 PHEIFDLLSEHVVGQDAAKRALAVAVYNHYKRISLGQSHEEDDVELAKSNVLLLGPTGSG 147 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 148 KTLLAQTLARALQVPFAIADATTLTEAGYVGEDVENILLKLITAA 192 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 109/228 (47%), Gaps = 64/228 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL +VEG+ +V + G I Sbjct: 202 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKIVEGTEAAVPPQGGRKHPQQELIHI 261 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF V + P DL Sbjct: 262 DTTNILFILGGAFVGLADIVGQRVGKTGIGFTSELPESKKHEEAELLRKVLPEDLNKFGM 321 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L + D ILT+ ++ L+ QYK + E L FT++++ A+A Sbjct: 322 IPEFVGRIPVVCSLDELTEDDLVRILTEPKNALVKQYKRMFAFEDSELVFTDEALRAIAH 381 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDA 416 AV+ + GAR L+++ ERVL+DI F DL E+ TVVI+A Sbjct: 382 EAVDHGT-----GARGLRSICERVLQDIMF---DLPEQEGASTVVINA 421 >gi|283795999|ref|ZP_06345152.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] gi|291076644|gb|EFE14008.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium sp. M62/1] Length = 587 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + + VS E VQ++LL L+EGS V GS ++T Sbjct: 355 GIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVDT 414 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 ++ILFI GAF H + R ++P Sbjct: 415 NNILFICGGAFPDLENIVKERLNKSSTMGFGAQLKGKYDDDPNLLGHATTEDLRKFGMIP 474 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ V L++L K ILT+ ++ ++ QY++L+ + + L F ED++ +A+ A Sbjct: 475 EFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLVFEEDALSWIAEEA 534 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 + + GAR L+ ++E ++DI + D +VVI Y+ + G Sbjct: 535 IR-----KETGARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLEKNGG 580 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD------ELMPKNILLVG 60 +P I S+LD+Y++GQ+ AK+ +A+A+ N ++R A+ D ++ NIL++G Sbjct: 236 APHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIG 295 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT + + LA+L P + T TE GY+G ++E +I L+ A N V + + Sbjct: 296 PTGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAEK 354 >gi|257093535|ref|YP_003167176.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046059|gb|ACV35247.1| ATPase AAA-2 domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 359 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 22/202 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P IV LD+Y+IGQ+DAK+ +A+A+ + +R+ R+ + NILLVGP+G GKT Sbjct: 33 TPSAIVRYLDQYVIGQEDAKKVLAVAVYSHYRKIATFHGDRESIAKSNILLVGPSGTGKT 92 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEV 122 + L+R+ PF+ + T + YV +E ++ L+D A + +++ DE+ Sbjct: 93 LLCDTLSRMLKVPFVTADATSLAQTKYVNEEIEAVLLRLLDKADGNIEDAQHGIIFIDEI 152 Query: 123 REQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN-FDI 181 + + NA+ R + + A E KL+D + D N I Sbjct: 153 DKLKTSNAQARAISGESVQHALLKIMEGSPVKLKD-------------NCYIDTGNILFI 199 Query: 182 PGGASVGILNLSELFSKVMGSG 203 GGA VG+ N + SK G G Sbjct: 200 CGGAFVGLEN---IMSKTHGFG 218 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 43/201 (21%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-INTDHILFIAS 301 +GI+F+DE DK+ ++ +S E VQ LL ++EGS V K I+T +ILFI Sbjct: 143 QHGIIFIDEIDKLKTSNA-QARAISGESVQHALLKIMEGSPVKLKDNCYIDTGNILFICG 201 Query: 302 GAF-------------------------------HVSRPAD-----LLPEIQGRFPVRVH 325 GAF +P D L+PE GR P+ + Sbjct: 202 GAFVGLENIMSKTHGFGFIATSGDDNQNILDRLNKRVKPTDLFEFGLIPEFTGRLPIIAN 261 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L L K+ I++ +++ QY E+ + EG+ L + +A++A+ + G Sbjct: 262 LHPLTKAMLVSIMSVPRNSIYRQYVEIFRGEGVELRIGPRVFEQIAEIAIEYKT-----G 316 Query: 386 ARRLQTVMERVLEDISFSASD 406 AR L+ + E ++ I + D Sbjct: 317 ARSLRGIFEELITPILYIVPD 337 >gi|154502353|ref|ZP_02039413.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149] gi|153796978|gb|EDN79398.1| hypothetical protein RUMGNA_00166 [Ruminococcus gnavus ATCC 29149] Length = 491 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 69/112 (61%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I +LD Y++GQ+ AK+A+A+A+ N ++R + E+ N+L++GPTG GKT Sbjct: 140 APHKIKGKLDEYVVGQEYAKKAMAVAVYNHYKRVATDSVDDIEIEKSNMLMIGPTGSGKT 199 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LARL P + T TE GY+G ++E ++ L+ A N V ++ + Sbjct: 200 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 251 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ LL L+EGS V G ++NT Sbjct: 252 GIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNT 311 Query: 294 DHILFIASGAF------------HVS---------------------------RPADLLP 314 +ILFI GAF H + R ++P Sbjct: 312 KNILFICGGAFPDLEGIIKERLMHKTSMGFNAELKDQYDNDKDILSKVTVEDLRNFGMIP 371 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K + IL + ++ ++ QY++L+ + + LDF + +++A+A+ A Sbjct: 372 EFIGRLPIIFTLKGLDKDMYVKILKEPKNAILKQYQKLLALDEVKLDFDDGALEAIAEKA 431 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E + DI + Sbjct: 432 MK-----KETGARALRAIIEEFMLDIMY 454 >gi|312898488|ref|ZP_07757878.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera micronuciformis F0359] gi|310620407|gb|EFQ03977.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Megasphaera micronuciformis F0359] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63 +P EI LD Y+IGQ+ AK+ +++A+ N ++R Q ++ +D EL NI++VGPTG Sbjct: 65 TPHEIKKNLDDYVIGQEAAKKTLSVAVYNHYKRLQSNSN-KDKDDVELQKSNIVMVGPTG 123 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA+ PF + T TE GYVG +VE + L+ A Sbjct: 124 SGKTLLAQTLAKFLDVPFAIADATSLTEAGYVGEDVENCLLKLIQAA 170 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 64/238 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 180 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTEANVPPQGGRKHPHQEMLQI 239 Query: 292 NTDHILFIASGAF----------------------HVSR------------PADL----- 312 +T +ILFI GAF H P DL Sbjct: 240 DTTNILFICGGAFDGIDKTIRSRRTEKNMGFGADIHKKNEESVEELLKEIIPTDLQKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV V L L++ ILT+ ++ L+ QY++++ + + L FT+D++ A+A+ Sbjct: 300 IPELIGRLPVLVTLNPLDEEAMIHILTEPKNALVKQYQKMLGMDDVKLTFTDDALKAIAE 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSAS---DLQE----KTVVIDAEYVRLHI 423 A+ + GAR L++++ER++ D+ F A D++E K V+D + +L + Sbjct: 360 EALRRKT-----GARGLRSIIERIMLDVMFDAPSRKDVEECIVTKESVVDGKAPQLKL 412 >gi|256832189|ref|YP_003160916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia denitrificans DSM 20603] gi|256685720|gb|ACV08613.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonesia denitrificans DSM 20603] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP--ADLRDE--LMPKNILLVGP 61 P+EI L+ YI+GQ AK+++A+A+ N ++R P D D+ L NILL+GP Sbjct: 64 PQEIFDFLEEYIVGQDTAKKSLAVAVYNHYKRITATDAPKVGDNHDDIDLAKSNILLIGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ +I Sbjct: 182 GIIYIDEIDKIARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFITI 241 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-----------------LLP 314 +T ++LFI +GAF ++ P D L+P Sbjct: 242 DTSNVLFIVAGAFAGLEDIISQRTGKRGIGFGAPLALPGDSANILSRVMPEDLHKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L+ ILT+ + L+ QY+++ + + L+FT+D+I A+A+ A Sbjct: 302 EFIGRLPVMTTVNELDVDALVSILTEPRNALVKQYRKMFALDDVDLEFTDDAIRAVAEQA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE----KTVVIDAEYVRL 421 + L T GAR L++++E VL+ + F S +D+++ + VV+D Y L Sbjct: 362 L-LRGT----GARGLRSILEEVLQQVMFEVPSRTDVEKVLITREVVLDKVYPTL 410 >gi|260438108|ref|ZP_05791924.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio crossotus DSM 2876] gi|292809589|gb|EFF68794.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Butyrivibrio crossotus DSM 2876] Length = 436 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 P EI + LD Y++GQ +AK+ +A+++ N ++R + D EL NIL++GPTG Sbjct: 66 LKPMEIKALLDEYVVGQDNAKKVLAVSVYNHYKRIIHKDSVVDDGVELQKSNILMLGPTG 125 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 126 SGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLIQAA 172 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 182 GIIYIDEIDKITKKSENVSITRDVSGEGVQQALLKILEGTMASVPPQGGRKHPQQELIQI 241 Query: 292 NTDHILFIASGAFHVSR----------------------------------PADL----- 312 +T +ILFI GAF P DL Sbjct: 242 DTTNILFICGGAFDGLEKIIENRMDQKSIGFNSIIADKTDFEIGEFFDKVLPQDLVKFGL 301 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L++ I+T+ ++ L+ QY++L + + + L+ TE+++ A+A Sbjct: 302 IPEFVGRIPVTVALDMLDEDALVKIITEPKNALVKQYRKLFEYDEVQLEITEEAVRAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ + GAR L+++ME+ + D+ + Sbjct: 362 KSLERKT-----GARGLRSIMEKAMMDVMY 386 >gi|15604535|ref|NP_221053.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia prowazekii str. Madrid E] gi|6225170|sp|Q9ZCN1|CLPX_RICPR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3861229|emb|CAA15129.1| ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX (clpX) [Rickettsia prowazekii] gi|292572325|gb|ADE30240.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia prowazekii Rp22] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICKILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQK 175 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 61/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEKSNNEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE--GIILDFTEDSIDAL 370 +PE GR P+ L L+K ILT ++ ++ QY++ + + +++D++ +++A+ Sbjct: 296 IPEFIGRLPIITTLDELDKEALITILTKPKNAIVKQYQKQFELDDADLVIDYS--ALEAI 353 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ A+ V GAR L++++E +L D + ++L+++ V I E V Sbjct: 354 AEKAL-----VKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|330443930|ref|YP_004376916.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila pecorum E58] gi|328807040|gb|AEB41213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlamydophila pecorum E58] Length = 422 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 +P+EI +D Y++GQ+ AK+ +A+A+ N ++R + L + N+LL+GPTG G Sbjct: 69 LTPKEIKKHIDEYVVGQERAKKTIAVAVYNHYKRIRALLHNKHVSYGKSNVLLLGPTGSG 128 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 129 KTLIAKTLAKILDVPFTIADATTLTEAGYVGEDVENIVLRLLQSA 173 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI R + N + ++R EGVQ+ LL ++EG++ + +Y Sbjct: 183 GIIYIDEIDKI-GRTTAN-VSITRDVSGEGVQQALLKIIEGTTANVPPKGGRKHPNQEYI 240 Query: 290 SINTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT++ILFI GAF H+ + Sbjct: 241 RVNTENILFIVGGAFVNLDKIIAKRLGKTTIGFSDDQADFSQKDRDHLLAKVETEDLIAF 300 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GRF V+ + L+ + ILT+ + ++ QY EL E + L F ++++ A+ Sbjct: 301 GMIPEFVGRFNCIVNCEELSLDELVAILTEPTNAIVKQYVELFAEENVKLVFEKEALYAI 360 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A + GAR L ++E +L D+ F Sbjct: 361 AKKAKQAKT-----GARALGMILENLLRDLMF 387 >gi|297792705|ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp. lyrata] gi|297310072|gb|EFH40496.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp. lyrata] Length = 572 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49 +P+EI L++++IGQ+ AK+ +++A+ N ++R Q+ A D Sbjct: 153 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAVKPADDDMV 212 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 213 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 272 Query: 110 A 110 A Sbjct: 273 A 273 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 71/240 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 283 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 342 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ A Sbjct: 343 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVESS 402 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +L ++ +LT+ ++ L QYK++ + + L FTE Sbjct: 403 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 462 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L++++E +L D + + SD+ E VV+D E V Sbjct: 463 ALRLIARKAITKNT-----GARGLRSLLESILMDSMYEIPDESTGSDMIE-AVVVDEEAV 516 >gi|325290595|ref|YP_004266776.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophobotulus glycolicus DSM 8271] gi|324965996|gb|ADY56775.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Syntrophobotulus glycolicus DSM 8271] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI + LD+Y+IGQ+ AK+ +++A+ N ++R + + D EL NI+++GPTG GKT Sbjct: 64 PVEIKAILDQYVIGQEQAKKVLSVAVYNHYKRISQSSKIDDVELQKSNIVMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LA++ PF + T TE GYVG +VE I+ L+ + Sbjct: 124 LLASTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAS 166 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQL 235 Query: 292 NTDHILFIASGAF--------------------HVSR--------------PADLL---- 313 +T +ILFI GAF + + P DLL Sbjct: 236 DTTNILFIVGGAFDGIEKIIQNRTGKKTMGFGAEIQKKSEKNVGELLRQIMPGDLLKYGL 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L++L++ ILT+ ++ L+ QY++L++ +G+ L+FTED++ A+A+ Sbjct: 296 IPEFVGRIPVVVTLEALDQDALVRILTEPKNALVKQYEKLLEMDGVQLEFTEDALKAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ N+ GAR L+ ++E + ++ + Sbjct: 356 EAIRRNT-----GARGLRAIVEETMLNVMY 380 >gi|84494296|ref|ZP_00993415.1| ClpX [Janibacter sp. HTCC2649] gi|84383789|gb|EAP99669.1| ClpX [Janibacter sp. HTCC2649] Length = 424 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 8/109 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRDELMPKNILLVGP 61 P+EI L +YIIGQ AKR++A+A+ N ++R Q AD D + NILL+GP Sbjct: 65 PKEIFDFLQQYIIGQDVAKRSLAVAVYNHYKRIQSGEGVGKKDADHVD-IAKSNILLIGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T ++LFI GAF H P DL+ P Sbjct: 242 DTTNVLFIVGGAFAGLEKLIESRSGKKGLGFGSELHNPKDLAESIHEVMPEDLMKFGLIP 301 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV + L+ ILT+ + L+ QY+++ + +G+ L+FT++++ A+A+ A Sbjct: 302 EFIGRLPVITTVSPLDIPALTEILTEPRNALVKQYQKMFRIDGVELEFTDEAVVAIAEQA 361 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHI 423 + GAR L+ +ME VL + F SD + VV+ E VR ++ Sbjct: 362 QARGT-----GARGLRAIMEEVLLPVMFDVPSDDEITKVVVTDEVVRKNV 406 >gi|254992851|ref|ZP_05275041.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes FSL J2-064] Length = 268 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 237 DTGNILFIVGGAF 249 >gi|225620157|ref|YP_002721414.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] gi|225214976|gb|ACN83710.1| membrane-associated ATP-dependent Clp protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] Length = 614 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 3/100 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 +P+EIV++LD+ +IGQ +AK+A+A+ R D+ NIL++GPTGVGK Sbjct: 249 LTPKEIVAQLDKTVIGQDEAKKALAVHAYLHCLRINGNKDIP---FRSNILMIGPTGVGK 305 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 T + + LA + G PF + +VT TE GYVG +VE ++ +L Sbjct: 306 TYLVKTLADILGLPFARADVTTLTETGYVGDDVEVVLYNL 345 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 58/224 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-KYGS---------- 290 +GIVFLDE DKI D+ S + VQ LL ++ G + ++G Sbjct: 358 HGIVFLDEVDKIAKADAHQSTTGNPSDKAVQEALLSMMNGEDIRVPEFGDRRMMHSSDGI 417 Query: 291 -INTDHILFIASGAF-------------------------------HVSRPAD------- 311 +NT +ILFI GAF + D Sbjct: 418 LMNTKNILFIFGGAFVGLDDIIKMRLKGESSLGFGSNAVINKLQKNRILSQVDVKDIEKY 477 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 ++PE GR P+ V L L K + + ILT T + I++Y E K+ G L T ++I+ + Sbjct: 478 GMIPEFIGRIPIIVTLNDLTKENLKDILTKTSESPIIKYTEFFKSIGKKLVVTAEAINFI 537 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 D A ++N +GAR L++++E + +I F+ ++ T+ + Sbjct: 538 VDKASSMN-----MGARSLKSIVETAMVNILFNLDGVKGNTLTL 576 >gi|199598204|ref|ZP_03211626.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus HN001] gi|229552142|ref|ZP_04440867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus rhamnosus LMS2-1] gi|258508347|ref|YP_003171098.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus rhamnosus GG] gi|258539556|ref|YP_003174055.1| ATP-dependent protease ATP-binding subunit ClpX [Lactobacillus rhamnosus Lc 705] gi|199590965|gb|EDY99049.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus HN001] gi|229314444|gb|EEN80417.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus rhamnosus LMS2-1] gi|257148274|emb|CAR87247.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus rhamnosus GG] gi|257151232|emb|CAR90204.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus rhamnosus Lc 705] gi|259649661|dbj|BAI41823.1| ATP-dependent protease ATP-binding subunit [Lactobacillus rhamnosus GG] Length = 416 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P EI+ L+ Y+IGQ AK+A+++A+ N ++R Q+ +D EL NI L+GPTG G Sbjct: 64 PIEIMKSLNDYVIGQDAAKKALSVAVYNHYKRVNQMQTATKDDTELQKSNIALIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 168 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 178 GIVYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 237 Query: 292 NTDHILFIASGAF----HVSR-----------------------------PADLL----- 313 +T +ILFI GAF ++ + P DL+ Sbjct: 238 DTTNILFIVGGAFDGIENIVKNRIGEKTIGFGTDSTNQVDPDKSLMQQIIPEDLMQFGII 297 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+ LN+SD ILT+ ++ L+ QY++L+ + L+FT +++ A+A Sbjct: 298 PEFIGRIPILAALEKLNESDLVRILTEPKNALVKQYQKLLSLDDTDLEFTPNALKAIAHQ 357 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ V D GAR L+++ME +++D F Sbjct: 358 AI-----VRDTGARGLRSIMEAIMQDTMF 381 >gi|51473872|ref|YP_067629.1| ATP-dependent protease ATP-binding subunit [Rickettsia typhi str. Wilmington] gi|61211460|sp|Q68W45|CLPX_RICTY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|51460184|gb|AAU04147.1| ATP-dependent Clp protease ATP and substrate binding subunit ClpX [Rickettsia typhi str. Wilmington] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICKILNDYVVGQDKAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLISAEFNIAKAQK 175 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDRIIRSRTNHSSIGFAANINIDKEKNNNEVLKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L+ L+K ILT ++ ++ QY++ + + L +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLEELDKESLITILTKPKNAIVKQYQKQFELDDAELVIEYSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ V GAR L++++E +L D + ++L+++ V + E V Sbjct: 356 KAL-----VKKTGARGLRSILEHLLLDSMYKVAELKKQRVTLTKEVV 397 >gi|284929121|ref|YP_003421643.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium UCYN-A] gi|284809580|gb|ADB95285.1| ATP-dependent Clp protease ATP-binding subunit ClpX [cyanobacterium UCYN-A] Length = 434 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD---ELMPKNILLVGP 61 P E+ + LD Y++GQ +AK+ +++A+ N ++R Q+ + D +L NILL+GP Sbjct: 84 PIEVKNYLDEYVVGQDEAKKVLSVAVYNHYKRLNFLQEKDKQVEDNIVDLQKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA Sbjct: 144 TGSGKTLLAQTLAKILEVPFAIADATSLTEAGYVGEDVENILFKLLQVA 192 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ VS EGVQ+ LL ++EG+ +VS G I Sbjct: 202 GIIYIDEIDKIACKNENFSTTRDVSGEGVQQALLKILEGTIANVSPNGGRKHPHQNCIQI 261 Query: 292 NTDHILFIASGAF---------HVSRPA------------------------------DL 312 NT ILFI GAF +++ + + Sbjct: 262 NTKDILFICGGAFISLDGIIDKRINKKSVGFVYSKDSYSDQGTIDLRQKVNSDDLIKFGM 321 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L +L + ILT + L+ QY++L+ + I L+FT+++I +A+ Sbjct: 322 IPELIGRLPVIASLNTLTEETLATILTKPRNALVKQYQKLLSMDDIELEFTKEAIKEIAE 381 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A +GAR L+ ++E ++ DI + Sbjct: 382 EAYRRK-----VGARALRGIIEELMLDIMY 406 >gi|262037358|ref|ZP_06010823.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia goodfellowii F0264] gi|261748615|gb|EEY35989.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Leptotrichia goodfellowii F0264] Length = 409 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64 P EI ++LD YIIGQ+ AK+ +++A+ N ++R + ++ D EL N+LLVGPTG Sbjct: 60 LKPAEIKAKLDDYIIGQETAKKVLSVAVYNHFKRIKHKMKNIDDVELQKSNVLLVGPTGS 119 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ P + T TE GYVG +VE ++ L+ A Sbjct: 120 GKTLLAQTLAKILNVPLAIADATTLTEAGYVGDDVENVLLKLIKAA 165 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 56/222 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 174 HGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIE 233 Query: 291 INTDHILFIASGAFHVSR---------------------------------PADLL---- 313 INT ILFI GAF P DL+ Sbjct: 234 INTKDILFIVGGAFEGLESKLKNRINEKRVGFGLENNGQKLDEMTLFENVLPEDLIKFGL 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR P+ L L++ ILT+ +++L+ QYK+ + E I L F +D+I +A Sbjct: 294 IPELIGRLPIITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMEDIKLSFEDDAIVEIAK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +A+ IGAR L++++E V+ D+ + ++ T VI Sbjct: 354 LALKRK-----IGARGLRSIIESVMLDLMYEIPSMENVTKVI 390 >gi|241668324|ref|ZP_04755902.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876857|ref|ZP_05249567.1| ATP-dependent protease ATP-binding subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842878|gb|EET21292.1| ATP-dependent protease ATP-binding subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R D EL N+LL+GPTG GK Sbjct: 59 PIEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESASITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTEKLMQKVESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++F+++++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSDEALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F +SD EK ++ D Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIIND 392 >gi|229821077|ref|YP_002882603.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia cavernae DSM 12333] gi|259491252|sp|C5BXF8|CLPX_BEUC1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229566990|gb|ACQ80841.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Beutenbergia cavernae DSM 12333] Length = 424 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P+EI + L++YIIGQ AK+++++A+ N ++R Q E+ N+LL+GPT Sbjct: 64 PKEIFAHLEQYIIGQDSAKKSLSVAVYNHYKRIQARESGTGLGEDGVEIAKSNVLLIGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GTGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKAENPSITRDVSGEGVQQALLKIIEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF----------------------HVS---------RPADL-----LPE 315 +T ++LFI +GAF H + RP DL +PE Sbjct: 241 DTTNVLFIVAGAFAGLDDIIATRSRRRGVGFNAPLHDADEEDLFSQVRPEDLQKYGLIPE 300 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV + L++ ILT+ ++ L+ QY+ + + +G+ L+FT+D+I+++AD A+ Sbjct: 301 FIGRLPVVATVTKLDQEALVRILTEPKNALVRQYQRMFEIDGVELEFTDDAIESVADQAL 360 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 L T GAR L+ ++E VL + F Sbjct: 361 -LRGT----GARGLRAILEEVLMPVMF 382 >gi|229918353|ref|YP_002886999.1| ATP-dependent protease ATP-binding subunit ClpX [Exiguobacterium sp. AT1b] gi|259491259|sp|C4L4J1|CLPX_EXISA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|229469782|gb|ACQ71554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Exiguobacterium sp. AT1b] Length = 422 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI + LD Y+IGQ AKRA+++A+ N ++R D EL NI+++GPTG GKT Sbjct: 64 PQEIRNILDDYVIGQDRAKRALSVAVYNHYKRINAGGRSDDVELAKSNIVMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +AR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTMARVLNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 166 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR----------------------------PADL-----L 313 +T +ILFI GAF V R P DL + Sbjct: 236 DTTNILFIVGGAFAGIESVVKRRIGKKVIGFGNDQENRELTQEDLLARALPEDLQKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L +L++ ILT ++ L+ QY+++++ + + L FT++++ +A + Sbjct: 296 PEFIGRLPVMATLTTLDEEALVEILTKPKNALVRQYEKMLELDDVELTFTDEALIEIAKL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVID 415 A+ + GAR L++++E ++ D+ F+ + D EK ++ D Sbjct: 356 AIKRKT-----GARGLRSIIEEMMLDVMFTVPSRDDIEKVIITD 394 >gi|152990291|ref|YP_001356013.1| ATP-dependent protease ATP-binding subunit ClpX [Nitratiruptor sp. SB155-2] gi|151422152|dbj|BAF69656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitratiruptor sp. SB155-2] Length = 409 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS ++S K G I Sbjct: 174 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNISAKGGRKHPNQEFVQI 233 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF + P DL +P Sbjct: 234 DTSNILFICGGAFDGLTDIIKRRLGGNVLGFGQEKRSKRDESDLLNYVEPDDLVHYGLIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L L++ D ILT+ ++ L+ QYK+L + + L F +++++A+AD+A Sbjct: 294 ELIGRLHMIATLNELSRDDMVRILTEPKNALVKQYKKLFALDEVELSFEKEALEAIADLA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L+++ME ++ DI F + + VVI Sbjct: 354 IKRKT-----GARGLRSIMEEIMVDIMFDLPEYKGYEVVI 388 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 4/121 (3%) Query: 3 LTFNF--SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILL 58 LT ++ +P+E+ + LD+Y+IGQ+ AK+ ++A+ N ++R +Q D E+ N+L Sbjct: 53 LTLDYLPTPKELKAILDQYVIGQEKAKKVFSVAVYNHYKRIFKQDMVDEDTEIAKSNVLF 112 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT +++ +A++ P + T TE GYVG +VE I+ L A V+++ Sbjct: 113 IGPTGSGKTLMAQTMAKVLDVPLAIADATSLTEAGYVGEDVENILTRLYHAADEDVKKAE 172 Query: 119 R 119 + Sbjct: 173 K 173 >gi|147866723|emb|CAN80513.1| hypothetical protein VITISV_026067 [Vitis vinifera] Length = 469 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI A S G VS EGVQ+ LL ++EG+ +V K G I Sbjct: 181 GIVYIDEVDKITKKAESSNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 240 Query: 292 NTDHILFIASGAF----------------HVSRPA------------------------- 310 +T ILFI GAF P Sbjct: 241 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 300 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +LT+ ++ L QYK+++ + L FTE+ Sbjct: 301 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 360 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L+ ++E++L + F D++ T ++DA V Sbjct: 361 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 409 >gi|34581315|ref|ZP_00142795.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia sibirica 246] gi|28262700|gb|EAA26204.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia sibirica 246] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + L + D EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYLQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFTANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + LD E ID A Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E +L D + ++L+++ V I E V Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|331695809|ref|YP_004332048.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia dioxanivorans CB1190] gi|326950498|gb|AEA24195.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pseudonocardia dioxanivorans CB1190] Length = 426 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI LD+Y++GQ KR +++A+ N ++R Q R EL NIL++GPT Sbjct: 64 PAEIHDFLDQYVVGQSATKRTLSVAVYNHYKRIQAGDKSRGSDGDGVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKLLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI +GAF V R P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGDRVGRRGLGFGAEIRSKTDLESSESFADTMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + SL+K ILT+ + L+ QY++L + +G+ L+FT+D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTSLDKEALVKILTEPRNALVKQYRKLFEMDGVELEFTDDALEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ +ME VL + + Sbjct: 361 QAI-LRGT----GARGLRAIMEEVLLPVMY 385 >gi|167746333|ref|ZP_02418460.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662] gi|317470743|ref|ZP_07930128.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA] gi|167654326|gb|EDR98455.1| hypothetical protein ANACAC_01042 [Anaerostipes caccae DSM 14662] gi|316901878|gb|EFV23807.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA] Length = 433 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 65/102 (63%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+EI + LD Y+IGQ +AK+ +++A+ N ++R L +L NI+++GPTG GKT Sbjct: 67 PKEIKAFLDDYVIGQDEAKKVLSVAVYNHYKRILLGDSSDIDLQKSNIIMLGPTGSGKTL 126 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ ++ A Sbjct: 127 LAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQAA 168 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAFH------VSR----------------------------PAD-----L 312 +T +ILFI GAF SR P D L Sbjct: 238 DTTNILFICGGAFDGLEKIIESRIGQKSIGFNAEIGNGQKEDIGSLLQQVLPEDFVKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV V L L++ IL + +S L+ QY++L + +G+ L+F + +++A+A+ Sbjct: 298 IPEFIGRVPVNVSLNPLDREALVRILKEPKSALVKQYQKLFELDGVDLEFEDGALEAIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ +ME V+ D+ + Sbjct: 358 KAMERKT-----GARGLRAIMEGVIMDLMY 382 >gi|254415781|ref|ZP_05029539.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus chthonoplastes PCC 7420] gi|196177487|gb|EDX72493.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus chthonoplastes PCC 7420] Length = 446 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILLV 59 PRE+ + LD ++IGQ DAK+ +++A+ N ++R + +D EL NILL+ Sbjct: 82 PRELKNYLDEHVIGQDDAKKVLSVAVYNHYKRLSFLEAKAKGKAGSDDPVELQKSNILLL 141 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ LA + PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 142 GPTGCGKTLLAQTLAAVLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDVEEAQR 201 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF R ADLL Sbjct: 262 DTGNILFICGGAFVGLEKVIEQRFGKRSIGFIQPGEGQSKEKRAADLLRHLEPDDLVKFG 321 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ + L++ ILT + L+ QY++L+K + + L FTEDS+ A+A Sbjct: 322 MIPEFIGRIPIAAVVDPLDEEALIAILTQPRNALVKQYQKLLKMDNVQLGFTEDSLRAIA 381 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ ++ + Sbjct: 382 QEAYRRKT-----GARALRGIVEELMLEVMY 407 >gi|325955074|ref|YP_004238734.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922] gi|323437692|gb|ADX68156.1| Sigma 54 interacting domain protein [Weeksella virosa DSM 16922] Length = 387 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 SPREI + LD Y+IGQ AK+ +++A+ N ++R + + D E+ N++LVG TG GK Sbjct: 59 SPREIKNFLDEYVIGQDQAKKILSVAVYNHYKRVLNESSVGDVEIDKSNVILVGETGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +A+L PF V+ T TE GYVG +VE I+ L+ A Sbjct: 119 TLLAKTIAKLLNVPFAIVDATVLTEAGYVGEDVESILSRLLQAA 162 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 54/218 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ +L ++EG+ V+ K+ + Sbjct: 172 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQAMLKILEGTVVNVPPKGGRKHPDQKFVEV 231 Query: 292 NTDHILFIASGAF-----HVS-------------------------------RPADLLPE 315 NT ILFIA GAF H++ + ++PE Sbjct: 232 NTKDILFIAGGAFSGIERHIANRLNKHVIGFKKDETKKETEHLLEEVNATDLKNFGIIPE 291 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 + GR P+ L+ L++ + ILT+ ++ LI QY++L + +G L TE+++D + A Sbjct: 292 LIGRLPIITFLQPLDQEAMKRILTEPKNALIKQYEKLFELDGKELVVTENTLDYIVKRAD 351 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 L +GAR L++V E + DI + + +K +V Sbjct: 352 ELG-----LGARGLRSVTEEIFTDIMYDIVNQPDKVLV 384 >gi|110638107|ref|YP_678316.1| ATP-dependent protease ATP-binding subunit ClpX [Cytophaga hutchinsonii ATCC 33406] gi|110280788|gb|ABG58974.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Cytophaga hutchinsonii ATCC 33406] Length = 411 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EGS V+ K +I Sbjct: 174 GIVYIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGSIVNVPPQGGRKHPDQKMIAI 233 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT++ILFI GAF +V+ + L+ Sbjct: 234 NTENILFICGGAFDGIARIIANRLNTQPIGFKTKDDEDDIDAENLLQYVTALDLKTFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR P+ +L LN+ ILT ++ ++ QYK+L EGI L F +++ + + Sbjct: 294 PELIGRLPLVSYLDPLNEEMLLEILTQPKNAIVKQYKKLFDMEGISLTFEPEALQFIVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 A+ +GAR L+++ E ++ D F + ++++ + VI+ EY + Sbjct: 354 AMAFK-----LGARGLRSICEAIMTDAMFDLPSEEIKQASFVINYEYAK 397 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 4/110 (3%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVG 60 FN P ++ S LD+Y+IGQ +AK+ +++A+ N ++R ++ D ++ NI++VG Sbjct: 55 FNLIKPAKMKSHLDQYVIGQDEAKKVMSVAVYNHYKRLMQSKINEDDDVQIEKSNIIMVG 114 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT ++R LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 115 ETGTGKTYLARTLAKILQVPFCIADATVLTEAGYVGEDVESILTRLLQAA 164 >gi|18423503|ref|NP_568792.1| CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] gi|9759182|dbj|BAB09797.1| ATP-dependent Clp protease regulatory subunit CLPX [Arabidopsis thaliana] gi|14334860|gb|AAK59608.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1 [Arabidopsis thaliana] gi|23296603|gb|AAN13130.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1 [Arabidopsis thaliana] gi|332008960|gb|AED96343.1| CLP protease regulatory subunit X [Arabidopsis thaliana] Length = 579 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49 +P+EI L++++IGQ+ AK+ +++A+ N ++R Q+ A D Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279 Query: 110 A 110 A Sbjct: 280 A 280 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 71/240 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 290 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 349 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ A Sbjct: 350 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTNAAVASNLMETVESS 409 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +L ++ +LT+ ++ L QYK++ + + L FTE Sbjct: 410 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 469 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L+ ++E +L D + + SD+ E VV+D E V Sbjct: 470 ALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEGTGSDMIE-AVVVDEEAV 523 >gi|242062022|ref|XP_002452300.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor] gi|241932131|gb|EES05276.1| hypothetical protein SORBIDRAFT_04g023280 [Sorghum bicolor] Length = 640 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLP----ADLRD----------- 49 +P+EI LD+Y+IGQ AK+ +++A+ N ++R Q L ADL Sbjct: 230 TPKEICKGLDKYVIGQDRAKKVLSVAVYNHYKRIYHQSLQKGSGADLGGFDGEADDDDNV 289 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 290 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 349 Query: 110 A 110 A Sbjct: 350 A 350 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 65/249 (26%) Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284 L + TV ++Q + G+V++DE DKI + I VS EGVQ+ LL ++EG+ V Sbjct: 343 LYKLLTVADFNVQAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 401 Query: 285 ST-KYGS----------INTDHILFIASGAF----------------------------- 304 + + G+ I+T ILFI GAF Sbjct: 402 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 461 Query: 305 ------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 DL +PE GRFP+ V L +LN+ +LT+ ++ L Sbjct: 462 GISSAQVTSSLLESVESGDLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLTEPKNALGK 521 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 Q+K+L + L FT+ ++ +A A++ N+ GAR L+T++E +L D + D Sbjct: 522 QFKKLFSMNNVKLHFTDGALRIIAKKAMSKNT-----GARGLRTILETILMDSMYEIPDA 576 Query: 408 QEKTVVIDA 416 + IDA Sbjct: 577 RSGEKRIDA 585 >gi|157964842|ref|YP_001499666.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia massiliae MTU5] gi|167009019|sp|A8F2I3|CLPX_RICM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157844618|gb|ABV85119.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia massiliae MTU5] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIAAEFNIAKAQK 175 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+ ILT ++ ++ QY++ + + L + +++A+A+ Sbjct: 296 IPEFIGRLPIVTTLDELDNEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALEAIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E +L D + ++L+++ V+I E V Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVIITQEVV 397 >gi|15620529|gb|AAL03913.1|U30252_1 ClpX [Synechococcus elongatus PCC 7942] gi|2351824|gb|AAB68678.1| ATP-dependent Clp protease, regulatory subunit [Synechococcus elongatus PCC 7942] Length = 450 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 6/117 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMPKNILLVGPT 62 P +I LD ++IGQ +AK+ +++A+ N ++R + A E+ NILL+GPT Sbjct: 89 PHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEFEAGETIEIQKSNILLIGPT 148 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LA+L PF + T TE GYVG +VE I+ L+ VA + E++R Sbjct: 149 GCGKTLLAQTLAKLLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQR 205 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 60/221 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 206 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQI 265 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T +ILFI GAF H+ P DL Sbjct: 266 DTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHME-PEDLVQF 324 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV L L+++ ILT+ L+ QY++LM + + L+F +D+I+A+ Sbjct: 325 GLIPEFIGRMPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAI 384 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 A A + GAR L+ ++E ++ ++ + Q+ T Sbjct: 385 AREAFRRKT-----GARALRGIVEEIMLEVMYELPSRQDVT 420 >gi|153871193|ref|ZP_02000427.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp. PS] gi|152072342|gb|EDN69574.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp. PS] Length = 186 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 10/121 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+EI L+ Y+IGQ AK+ +++A+ N ++R +Q D+ E+ N+LL+GPTG Sbjct: 69 TPQEINLHLNDYVIGQDYAKKVLSVAVYNHYKRLDSNRQSENDV--EISKSNVLLIGPTG 126 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVR 123 GKT ++ LAR PF + T TE GYVG +VE I+++ + I + R+ +R Sbjct: 127 CGKTLLAETLARFLEVPFAMADATTLTEAGYVGEDVEHILQNYYKIVIMM----RKRPIR 182 Query: 124 E 124 E Sbjct: 183 E 183 >gi|2674203|gb|AAB88706.1| CLP protease regulatory subunit CLPX [Arabidopsis thaliana] Length = 579 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49 +P+EI L++++IGQ+ AK+ +++A+ N ++R Q+ A D Sbjct: 160 TPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKPADDDMV 219 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 220 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTV 279 Query: 110 A 110 A Sbjct: 280 A 280 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 71/240 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 290 GIVYIDEVDKITKKAESLYISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 349 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ A Sbjct: 350 DTKDILFICGGAFVDIEKTISERRHDSSIGFGAPVRANMRAGGVTTAAVASNLMETVETS 409 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +L ++ +LT+ ++ L QYK++ + + L FTE Sbjct: 410 DLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMNSVKLHFTES 469 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L+ ++E +L D + + SD+ E VV+D E V Sbjct: 470 ALRLIARKAITKNT-----GARGLRALLESILMDSMYEIPDEGTGSDMIE-AVVVDEEAV 523 >gi|295093765|emb|CBK82856.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Coprococcus sp. ART55/1] Length = 495 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 21/157 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y++GQ+ AK+ +++A+ N ++R L + D E+ N+L+VGPTG GK Sbjct: 135 APHKIKAMLDEYVVGQEYAKKVISVAVYNHYKRV-LTDSMDDIEIEKSNMLMVGPTGCGK 193 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121 T I + +ARL P + T TE GY+G +VE ++ L+ A N V ++ R DE Sbjct: 194 TYIVKTIARLLKVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERGIVFIDE 253 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 + + + K SN+R+V + ++ G Sbjct: 254 IDK--------------IAKKQNSNSRDVSGESVQQG 276 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GIVF+DE DKI + + N VS E VQ+ LL L+EG+ V GS INT Sbjct: 247 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINT 306 Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314 +ILFI GAF +SR A ++P Sbjct: 307 RNILFICGGAFPDIEEIIKQRISRQASMGFKAELKDKYDDDPNLLRQVTTEDLREFGMIP 366 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L +L+K+ + IL + ++ ++ QYK+L+ + + L F + + +A+A+ A Sbjct: 367 EFLGRLPVLFTLDALDKNMYVSILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIAEEA 426 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E+ + DI + Sbjct: 427 IKRKT-----GARALRAIIEKFMLDIMY 449 >gi|325186763|emb|CCA21310.1| ATPdependent Clp protease ATPbinding subunit clpX putative [Albugo laibachii Nc14] Length = 556 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 60/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI +++ I VS EGVQ+ LL ++EG+ ++ K G +I Sbjct: 300 GIVYIDEIDKISRKNATTNIARDVSGEGVQQALLKMLEGNLVNIPEKGGRKNPRDDCVTI 359 Query: 292 NTDHILFIASGAF---------------------------HVSR----------PADLL- 313 +T +ILFI GAF H+ + P DL+ Sbjct: 360 DTSNILFICGGAFAGLEKTIAARTCRSSIGFGAIMPNTDLHMQKEAAACMENVEPEDLIA 419 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR PV V + L K + IL++ +++++ Q+K L +G+ T+ +++A Sbjct: 420 FGLIPEFIGRLPVIVSTRGLQKQEMVRILSEPKNSIVRQFKALFALQGVEFVVTKGALEA 479 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 +A++A+ N+ GAR L++++ER L D+ F DL Sbjct: 480 VAEIALEKNT-----GARGLRSILERTLVDVMFDLPDL 512 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 68/196 (34%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIA---------------------------LRNRWR 39 +PR + LD Y+IGQ+ K+ +++A L++R Sbjct: 124 LTPRMMCQGLDDYVIGQESVKKVLSVAVHNHYKRLHLLDLMRAQKEAAVAKATMLKSRIE 183 Query: 40 RQQLPADLRD------------------------------------ELMPKNILLVGPTG 63 LP L D EL N+LL+GPTG Sbjct: 184 LNDLPEGLSDMSRRLLLEQVLSGLNEKSWSESGVTVTENLKILEDVELDKTNVLLLGPTG 243 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119 GKT +++ LARL P + + T T+ GYVG +VE ++ L + + ++R Sbjct: 244 SGKTLLAKTLARLVKVPIVIADATCLTQAGYVGEDVESVLFKLYQASGYNIEATQRGIVY 303 Query: 120 -DEVREQASINAEERI 134 DE+ + + NA I Sbjct: 304 IDEIDKISRKNATTNI 319 >gi|295090911|emb|CBK77018.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Clostridium cf. saccharolyticum K10] Length = 499 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + + VS E VQ++LL L+EGS V GS ++T Sbjct: 267 GIIFIDEIDKIAKKKNTTSRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVDT 326 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 ++ILFI GAF H + R ++P Sbjct: 327 NNILFICGGAFPDLENIVKERLNKSSTMGFGAQLKGKYDDDPNLLGHATTEDLRKFGMIP 386 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ V L++L K ILT+ ++ ++ QY++L+ + + L F ED++ +A+ A Sbjct: 387 EFLGRLPITVTLQALTKDLMVRILTEPKNAILKQYEKLLAMDEVRLVFEEDALSWIAEEA 446 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 + + GAR L+ ++E ++DI + D +VVI Y+ + G Sbjct: 447 IR-----KETGARALRAIIEEFMQDIMYEIPKDPNIGSVVITRAYLEKNGG 492 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRD------ELMPKNILLVG 60 +P I S+LD+Y++GQ+ AK+ +A+A+ N ++R A+ D ++ NIL++G Sbjct: 148 APHIIKSKLDQYVVGQEQAKKVIAVAVYNHYKRAFCQTAEGEDGSQDEVQIEKSNILMIG 207 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT + + LA+L P + T TE GY+G ++E +I L+ A N V + + Sbjct: 208 PTGSGKTYLVKTLAKLLDVPLAIADATTLTEAGYIGDDIESVISKLLAAADNDVERAEK 266 >gi|314919375|gb|EFS83206.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL050PA1] Length = 429 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD +IGQ++AKR +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDASVIGQEEAKRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELGKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|310643605|ref|YP_003948363.1| ATP-dependent clp protease ATP-binding subunit clpx [Paenibacillus polymyxa SC2] gi|309248555|gb|ADO58122.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus polymyxa SC2] Length = 418 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P +I LD+Y+IGQ AK+++++A+ N ++R + D EL NIL++GPTG GKT Sbjct: 64 PMQIREILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ IL++ ++ L QY+++++ + + L+F +D+++A+A Sbjct: 296 PEFVGRLPVISTLEPLDEKTLVRILSEPKNALTKQYQKMLELDNVQLEFKQDALEAIARE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L+ ++E ++ D+ + + T VI+ + V+ Sbjct: 356 AIKRNT-----GARGLRAIIEGIMLDVMYEVPSRDDVTTCVINEQVVK 398 >gi|115314707|ref|YP_763430.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella tularensis subsp. holarctica OSU18] gi|115129606|gb|ABI82793.1| endopeptidase Clp [Francisella tularensis subsp. holarctica OSU18] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R L D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNLTKDDDTELKRSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T T+ GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTKAGYVGDDVENIIVRLLQNA 162 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVIKHRMDKVSIGFNADVIQQKNSLDSDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDNVNIEFTDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAITKKT-----GARGLRTILENVLLEVMFHIPSSEDI-EKVIIND 392 >gi|108756903|ref|YP_632232.1| ATP-dependent protease ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] gi|108460783|gb|ABF85968.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Myxococcus xanthus DK 1622] Length = 425 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDELMPK 54 +P EI + LD Y+IGQ AK+ +A+A+ N ++R + P EL Sbjct: 61 TPAEIKAFLDDYVIGQDQAKKVLAVAVYNHYKRIYQKKPNSRPRPGVKGPTGEEVELSKS 120 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ A Sbjct: 121 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 176 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI + G+ +R EGVQ+ LL ++EG+ + +Y Sbjct: 186 GIVYIDEIDKIARK--GDMPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 243 Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313 ++T +ILFI GAFH ++ P DL+ Sbjct: 244 QVDTTNILFICGGAFHGIDGVIKRRVGEKGLGFGAKITHREERSVGELLALTEPEDLMRF 303 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L + D +IL+ ++ L+ QY++L + E + L FT++++ A+ Sbjct: 304 GMIPEFIGRLPMIATLNDLKEEDLVIILSQPKNALVKQYQKLFEFEKVKLTFTKEALRAI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A A+ +S GAR L+ ++E + +I + Sbjct: 364 AREAMRRHS-----GARGLRAILEDAMLEIMY 390 >gi|313673003|ref|YP_004051114.1| ATP-dependent clp protease ATP-binding subunit clpx [Calditerrivibrio nitroreducens DSM 19672] gi|312939759|gb|ADR18951.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Calditerrivibrio nitroreducens DSM 19672] Length = 414 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 68/112 (60%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I LD+Y+IGQ DAK+ +++A+ N ++R + E+ NILL+G TG GKT Sbjct: 61 TPDKIKEVLDQYVIGQDDAKKTLSVAVYNHYKRIFYKSKDDIEIEKSNILLIGATGTGKT 120 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 ++R LA+ PF + T TE GYVG +VE II L+ A V +++R Sbjct: 121 LLARTLAKTLNVPFAISDATTLTEAGYVGEDVEHIILRLLQAADFDVEKAQR 172 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 59/219 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVFLDE DKI + I VS EGVQ+ LL +VEG+ + ++ + Sbjct: 173 GIVFLDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTIANVPPQGGRKHPNQEFIQV 232 Query: 292 NTDHILFIASGAFH------------------------------------VSRPADLL-- 313 +T +ILFI GAF +P DL+ Sbjct: 233 DTTNILFICGGAFEGLTEIIKQRIGKKSLGFKSNEDRKSVNEMSKSDILKFVQPDDLIKY 292 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE+ GR PV L L++ IL + +++++ QYKEL + + + L FT+ ++ ++ Sbjct: 293 GLIPELVGRLPVVAVLDDLDEDALVKILVEPKNSIVKQYKELFRMDNVELTFTDGALRSI 352 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 A+ + GAR L+ ++E ++ DI F +++ Sbjct: 353 VKKAIERKT-----GARGLRAIIEEIMTDIMFKIPSMKD 386 >gi|295397568|ref|ZP_06807647.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans ATCC 11563] gi|294974192|gb|EFG49940.1| ATP-dependent Clp protease ATP-binding subunit [Aerococcus viridans ATCC 11563] Length = 418 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 P EI S LD Y+IGQ AK+ +++A+ N ++R + D+ L NILL+GPTG G Sbjct: 65 PTEIRSILDDYVIGQDQAKKTLSVAVYNHYKRISSNNETNDDGVSLQKSNILLMGPTGSG 124 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 KTYLAQTLARILDVPFAIADATTLTEAGYVGEDVENILVKLMQSA 169 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ + G + Sbjct: 179 GIIYVDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTEANIPPQGGRKHPHQELIQV 238 Query: 292 NTDHILFIASGAF------------------------HV----------SRPADL----- 312 +T +ILFI GAF H+ + P DL Sbjct: 239 DTTNILFIVGGAFDGIEPIIKERLGEKVIGFGNSSNNHILNDNDAIMQQAIPQDLQTFGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ +L L K D ILT ++ L+ QY++L+K + + L FT+++++A+A Sbjct: 299 IPEFIGRLPIMANLNKLTKDDLVHILTQPKNALVKQYQQLLKMDNVELIFTDEALEAIAQ 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A++ + GAR L++++E + +I F ++ + V+ E V Sbjct: 359 KALDRKT-----GARGLRSIIEEAMLEIMFEIPSREDVSKVMITESV 400 >gi|308070424|ref|YP_003872029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus polymyxa E681] gi|305859703|gb|ADM71491.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus polymyxa E681] Length = 418 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P +I LD+Y+IGQ AK+++++A+ N ++R + D EL NIL++GPTG GKT Sbjct: 64 PMQIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQNKIDDVELQKSNILMLGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF + P DLL Sbjct: 236 DTTNILFICGGAFDGLEQMIKRRIGKKVIGFNATSEQKDLKPGEYTSMVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ IL++ ++ L QY++L++ + + L+F +D+++A+A Sbjct: 296 PEFVGRLPVISTLEPLDENTLVRILSEPKNALTKQYQKLLELDNVQLEFKQDALEAIARE 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ N+ GAR L+ ++E ++ D+ + ++ T VI+ + V+ Sbjct: 356 AIKRNT-----GARGLRAIIEGIMLDVMYEVPSREDVTTCVINEQVVK 398 >gi|46579747|ref|YP_010555.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio vulgaris str. Hildenborough] gi|120602777|ref|YP_967177.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio vulgaris DP4] gi|61211537|sp|Q72CE7|CLPX_DESVH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214774|sp|A1VE84|CLPX_DESVV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|46449162|gb|AAS95814.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio vulgaris str. Hildenborough] gi|120563006|gb|ABM28750.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio vulgaris DP4] gi|311233537|gb|ADP86391.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio vulgaris RCH1] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 6/108 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPT 62 +P EI + LD Y+IGQ AK+ +++A+ N ++R + L ++ EL NILL+GP+ Sbjct: 62 LTPAEIKARLDEYVIGQHQAKKILSVAVHNHYKRVFYAEALGGEV--ELEKSNILLIGPS 119 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 GSGKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 177 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236 Query: 292 NTDHILFIASGAF--------------------HVS--------------RPADL----- 312 +T +ILFI GAF VS P DL Sbjct: 237 DTSNILFILGGAFIGLDKIVDQRSGGGSMGFGAKVSNRKDRPLGELLDQVHPNDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV H+ L + D ILT+ ++ L+ QY++L + + + L FT +++ ++A Sbjct: 297 IPEFIGRIPVVTHVDELGEEDLIRILTEPKNALVRQYQKLFELDKVTLRFTANALKSIAS 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+ VME V+ DI +S L+ Sbjct: 357 QAIERKT-----GARGLRNVMENVMLDIMYSLPTLE 387 >gi|303232787|ref|ZP_07319472.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium vaginae PB189-T1-4] gi|302481273|gb|EFL44348.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium vaginae PB189-T1-4] Length = 558 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 58/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYGS-----I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG++ S K+ S I Sbjct: 321 GIVYIDEIDKIARKAENLSITRDVSGEGVQQALLKILEGTNASVPPQGGRKHPSQELIHI 380 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 NT++ILFI GAF + + P DL Sbjct: 381 NTENILFICGGAFVGLDKIVADRIGKQGIGFTGELVRKVDDAQDELLAQVMPQDLHKFGM 440 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV K L D ILT ++ +I QYK + EG+ L+F +D+++ +A Sbjct: 441 IPEFVGRIPVITSTKELTARDLVSILTTPKNAIIKQYKRIFDIEGVELEFEDDALEEIAK 500 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414 +A+ N+ GAR L+ + E+ LE++ F SDL V+I Sbjct: 501 LALERNT-----GARGLRAMCEKTLENVMFDIPSDLSIVKVII 538 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE I+ L++ Sbjct: 251 ELAKSNILLLGPTGTGKTLLAQTLARFLEVPFAIADATTLTEAGYVGEDVENILLKLINA 310 Query: 110 A 110 A Sbjct: 311 A 311 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 26/33 (78%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40 +P EI EL +Y++GQ+ AKRA+++A+ N +RR Sbjct: 146 TPHEIYDELSQYVMGQEQAKRALSVAVYNHYRR 178 >gi|218885219|ref|YP_002434540.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756173|gb|ACL07072.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 512 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGV 64 +P EI ++LD Y+IGQ AK+ +++A+ N ++R + L E L NILL+GP+G Sbjct: 62 LTPAEIKAKLDEYVIGQHQAKKILSVAVHNHYKRVFFASALGGEVELEKSNILLIGPSGS 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 GKTLLAKTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 177 GIIYIDEIDKISRKGDGPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF P DL Sbjct: 237 DTSNILFILGGAFIGLDKLIGQRIGGGAMGFGAKVATRKDLPFGELLGQVHPNDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV H++ L++ D ILT+ ++ L+ QY++L + + + L FT +++ ++A Sbjct: 297 IPEFVGRIPVVTHVEELSEDDLVRILTEPKNALVRQYQKLFELDKVNLRFTANALKSIAS 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L+ VME V+ DI + Q+ K VI+ Sbjct: 357 QAIERKT-----GARGLRNVMESVMLDIMYKLPSQQDIKECVIN 395 >gi|308271900|emb|CBX28508.1| ATP-dependent Clp protease ATP-binding subunit clpX [uncultured Desulfobacterium sp.] Length = 414 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 5/114 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P++I LD Y+I Q AK+ +++A+ N ++R L +D+ EL NILL+GPTG G Sbjct: 63 PKQIKEMLDDYVIEQDYAKKILSVAVYNHYKR--LNSDISAGNVELQKSNILLIGPTGTG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR PF + T TE GYVG +VE II L+ A V + +R Sbjct: 121 KTLMAQTLARFLNVPFTIADATSLTEAGYVGEDVENIILSLLQNADYDVEKCKR 174 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI A+ I VS EGVQ+ LL ++EG++ S + + Sbjct: 175 GIVYIDEIDKIAAKSENPSITRDVSGEGVQQALLKIIEGTTASVPPKGGRKHPQQDFVKV 234 Query: 292 NTDHILFIASGAFH----------------------------------VSRPADLL---- 313 +T +ILFI G F+ + +P DL+ Sbjct: 235 DTMNILFICGGTFNGLDQIIQKRFGSKSMGFGAKISGKENKSKSELLKLVQPEDLIKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ ILT+ ++ LI Q+K+L + EGI L FT+ ++ A+A Sbjct: 295 IPEFLGRLPVVASLDELSEETLIRILTEPKNALINQFKKLFEMEGINLRFTDSALSAIAK 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A S GAR L+ V+E L DI + Sbjct: 355 EAQKRKS-----GARGLRAVLESCLLDIMY 379 >gi|160939984|ref|ZP_02087330.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC BAA-613] gi|158437128|gb|EDP14894.1| hypothetical protein CLOBOL_04874 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 12/124 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ---QLPADLRDE---------LMPKN 55 +P I +ELD Y+IGQ+ AK+ +A+A+ N ++R Q P D E + N Sbjct: 121 APHVIKAELDEYVIGQEKAKKVMAVAVYNHYKRAFLDQPPQDGAGEDAGTDKNIVIEKSN 180 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115 IL++GPTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V Sbjct: 181 ILMIGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVE 240 Query: 116 ESRR 119 ++R Sbjct: 241 RAQR 244 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + N VS E VQ++LL L+EGS+V GS +NT Sbjct: 245 GIIFIDEIDKIAKKKQTNARDVSGESVQQELLKLLEGSTVEVPVGSNQKNAMTPMATVNT 304 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 D+ILFI GAF V+ R ++P Sbjct: 305 DNILFICGGAFPDLEEIIKERLMKKITMGFGSILKDTYDKDPDILGQVTNEDLRTFGMIP 364 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV V L+ L + IL + ++ + QY+ L++ + + L F ++++ +A A Sbjct: 365 EFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQYERLLEMDEVRLVFEDEALKWIAGEA 424 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + + GAR L+ ++E + DI + D +VV+ Y+ Sbjct: 425 IKRGT-----GARALRAILEEFMLDIMYEIPKDPNIGSVVVTRPYL 465 >gi|126668932|ref|ZP_01739873.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17] gi|126626595|gb|EAZ97251.1| ATP-dependent protease ATP-binding subunit [Marinobacter sp. ELB17] Length = 427 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L+ Y+IGQ AK +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPAEIRETLNEYVIGQDRAKVVLAVAVYNHYKRLRYGEGKADVELGKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAETLARVLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH------VSRPA----------------------------------D 311 NT +ILFI GAF R A Sbjct: 242 NTSNILFICGGAFAGLEKVIQQRSARSSIGFSAEVASKDNIKSAGEIIKDVQTEDLVKFG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ ILT+ ++ L QY++L + EG+ LDF E+++ A+A Sbjct: 302 LIPEFVGRLPVVATLTELDEDALIQILTEPKNALTKQYQKLFEMEGVELDFREEALRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A N+ GAR L+++ME L D + Q+ V+ E V Sbjct: 362 RKAKERNT-----GARGLRSIMEATLLDTMYQIPSEQDVCKVVVDESV 404 >gi|294790931|ref|ZP_06756089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia inopinata F0304] gi|294458828|gb|EFG27181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Scardovia inopinata F0304] Length = 426 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 17/130 (13%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----------------ADLRDE 50 +P I S LDRY++GQ+ AK A+A+A+ N ++R + +DL Sbjct: 63 MTPARISSYLDRYVVGQKKAKHALAVAVYNHYKRINMELEDSAEKLKRSLSAEHSDLDQV 122 Query: 51 LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++ K N+LL+GPTG GKT +++ LA + PF + T TE GYVG +VE I++ L+ Sbjct: 123 VVAKSNVLLLGPTGTGKTYLAQTLASIMDVPFTIADATTLTEAGYVGDDVETILQRLIQA 182 Query: 110 AINIVRESRR 119 A + +++R Sbjct: 183 ADGNINQAQR 192 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 61/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEG--SSVSTKYGS-------- 290 GI+++DE DKI AR SG ++R EGVQ+ LL ++EG S+V K G+ Sbjct: 193 GIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKIIEGTVSTVPVK-GTRKHEDQEI 250 Query: 291 --INTDHILFIASGAF---------------------------------HVSRPADL--- 312 INT ILFI GAF + P DL Sbjct: 251 VRINTKDILFICGGAFVGLEDIIRRRLGKRETGFGTDWSLQDTSDEDILTLVTPDDLAEY 310 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 LPE GR PV L L D ILT + L Q++++ + + L FT++++ ++ Sbjct: 311 GLLPEFIGRMPVVSTLSPLTVDDLVSILTTPVNALTKQFQKMFAVDQVDLSFTDEALRSI 370 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 A +++ + GAR L+++ME +L++ F D Sbjct: 371 AKKSLSRGT-----GARGLRSIMENLLQETMFRIPD 401 >gi|260549097|ref|ZP_05823318.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624] gi|260407825|gb|EEX01297.1| ATP-dependent protease Clp [Acinetobacter sp. RUH2624] Length = 437 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGV 64 P EI + L++Y+IGQ AK+ +++A+ N ++R ++ +D E+ NILL+GPTG Sbjct: 63 PHEIRAALNQYVIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LARL PF + T TE GYVG +VE I++ L+ A Sbjct: 123 GKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 168 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 101/372 (27%) Query: 102 IIRDLVDVAINIVRESRRDEVREQAS--INAEERILDAL----VGKTATSNTREV----F 151 I + VDV +++V+ S++ E + AS + I AL +G+ T V Sbjct: 32 ICNECVDVCLDLVQTSQQVEAGDWASKALPKPHEIRAALNQYVIGQDLAKKTLSVAVYNH 91 Query: 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 K+L+ G+ D+E+A SN + G G L++ ++++ Sbjct: 92 YKRLKVGQSGHVSKDVEIAK-----SNILLIGPTGSGKTLLAQTLARLLD---------- 136 Query: 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENY-------------GIVFLDEFDKIVAR 258 P M D + L + V D +V+ GI+++DE DKI + Sbjct: 137 ----VPFAMADAT-TLTEAGYVGEDVENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRK 191 Query: 259 DSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSINTDHILFIASGAF- 304 I VS EGVQ+ LL ++EG+ S ++ I+T +ILFI GAF Sbjct: 192 SENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFA 251 Query: 305 ----------------------------------HVSRPADL-----LPEIQGRFPVRVH 325 P DL +PE GR PV Sbjct: 252 GLEKIVQQRQEKGGIGFTADVKKKDESKKIAELFRQVEPTDLVKFGLIPEFIGRLPVIAT 311 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A A+ N+ G Sbjct: 312 LEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVAKRALERNT-----G 366 Query: 386 ARRLQTVMERVL 397 AR L++++E VL Sbjct: 367 ARGLRSILENVL 378 >gi|307135876|gb|ADN33742.1| ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo subsp. melo] Length = 571 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 18/126 (14%) Query: 3 LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLP--------ADLR 48 L NF +P+EI LD+++IGQ AK+ +++ + N ++R Q P AD Sbjct: 151 LGPNFPTPKEIAKGLDKFVIGQDRAKKVLSVGVYNHYKRIYHESLQRPTGDAFNNKADAA 210 Query: 49 D----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 D EL NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ Sbjct: 211 DDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 270 Query: 105 DLVDVA 110 L+ VA Sbjct: 271 KLLMVA 276 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 286 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQI 345 Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311 +T ILFI GA F A+ Sbjct: 346 DTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESS 405 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +L ++ +LT+ ++ L QY+++ + + L FTE+ Sbjct: 406 DLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTEN 465 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A++ N+ GAR L++++E +L D + D++ +IDA Sbjct: 466 ALRLIARKAMSKNT-----GARGLRSILENLLMDSMYEIPDIRTGKDIIDA 511 >gi|262201988|ref|YP_003273196.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gordonia bronchialis DSM 43247] gi|262085335|gb|ACY21303.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gordonia bronchialis DSM 43247] Length = 426 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 8/109 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 P EI L+ Y+IGQ AKR +A+A+ N ++R Q + +D EL NIL++GP Sbjct: 64 PAEIRDFLENYVIGQDTAKRTLAVAVYNHYKRIQA-GEKKDSRTGETVELAKSNILMLGP 122 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 69/247 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF--------------------------------HVSR--PADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIVSDRIGKRGIGFGNDVATKDEVDTSDHFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K IL++ ++ L+ QY L + + L+FT D+++A+AD Sbjct: 301 IPEFIGRLPVVASVTNLDKESLVSILSEPKNALVKQYTRLFDMDNVELEFTTDALEAIAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI------ 423 A++ + GAR L+ +ME VL + + S D+++ VV+ E VR ++ Sbjct: 361 QAIHRGT-----GARGLRAIMEEVLLPVMYDIPSRDDVEK--VVVTGETVRDNVLPTIVP 413 Query: 424 -GDFPSE 429 D PSE Sbjct: 414 RKDSPSE 420 >gi|326386906|ref|ZP_08208520.1| ATP-dependent protease ATP-binding subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208586|gb|EGD59389.1| ATP-dependent protease ATP-binding subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 417 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR+I L+ Y+IGQ AKR +++A+ N ++R + + EL NILLVGPTG GK Sbjct: 66 TPRDIFETLNDYVIGQDRAKRVLSVAVHNHYKRLKHSGKGGEVELSKSNILLVGPTGSGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE II L+ + Sbjct: 126 TLLAQTLAKTFDVPFTMADATTLTEAGYVGEDVENIILKLLQAS 169 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 57/217 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 +GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ Sbjct: 177 QHGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFL 236 Query: 290 SINTDHILFIASGAF--------------------HVS--------------RPADLL-- 313 ++T +ILFI GAF HV+ P DLL Sbjct: 237 QVDTTNILFICGGAFAGLERIIADRLQKRSIGFGAHVADPDKRRVGELLQKAEPEDLLKF 296 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L+ IL + ++ L+ QY++L + E + L FTE++++A+ Sbjct: 297 GLIPEFVGRLPVIATLNDLDIDALVRILREPKNALVKQYQKLFELEDVQLTFTEEALEAI 356 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A A+ + GAR L++++E +L D F L Sbjct: 357 AKKAIERKT-----GARGLRSIVEGLLLDTMFDLPTL 388 >gi|116333989|ref|YP_795516.1| ATP-dependent protease ATP-binding subunit [Lactobacillus brevis ATCC 367] gi|122269327|sp|Q03QN7|CLPX_LACBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116099336|gb|ABJ64485.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus brevis ATCC 367] Length = 418 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 4/107 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTG 63 +P +IV L++Y+IGQ +AKR +++A+ N ++R A D EL NI ++GPTG Sbjct: 63 TPADIVKTLNQYVIGQTEAKRTLSVAVYNHYKRVNEMAQETDDDGPELQKSNIAVIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 SGKTYLAQSLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 65/235 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 179 GIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQI 238 Query: 292 NTDHILFIASGAF-------------------------HVSRPAD--------------- 311 +T +ILFI GAF HV D Sbjct: 239 DTTNILFIVGGAFDGIEGIVKRRLGDQTIGFGADSQEQHVLSSGDSLMQHVIPEDLLEFG 298 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L+ L+++D ILT+ ++ L+ QY++L+ + + L F ++ +A Sbjct: 299 LIPEFIGRLPILTALEKLDENDLVRILTEPKNALVKQYEKLLALDNVDLQFQPAALREMA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVRLH 422 +A+ N+ GAR L++++E V+ DI F DL +T VVI E V H Sbjct: 359 KLAIARNT-----GARGLRSIIEDVMRDIMF---DLPSRTDVAKVVITPETVTEH 405 >gi|94986251|ref|YP_605615.1| ATP-dependent protease ATP-binding subunit [Deinococcus geothermalis DSM 11300] gi|167009012|sp|Q1IWD8|CLPX_DEIGD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|94556532|gb|ABF46446.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus geothermalis DSM 11300] Length = 406 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SP+EI + LD ++IGQ +AK+A+A+A+ + ++R P D+ L NILL+GPTG GKT Sbjct: 65 SPKEIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP-DVN--LQKSNILLIGPTGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA + PF + T TE GYVG +VE +I L+ A Sbjct: 122 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 164 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 52/222 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ V + G + Sbjct: 174 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 233 Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317 NT +ILFI GAF ++R P DL +PE Sbjct: 234 NTKNILFIVGGAFENMAEIARARTNVRSVGFGAEHKGEEKEELRFLPEDLVKFGLIPEFV 293 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L+ L++ ILT+ + ++ QY+ L +G+ L FTE+++ +A A Sbjct: 294 GRLPLVVQLQDLDEDALVRILTEPQGAIVKQYQALFGFQGVDLTFTEEALREVAHRAKAR 353 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ V+E+ + D+ F K + DAE + Sbjct: 354 KT-----GARGLRAVLEKAMTDLLFELPIEGLKELRFDAENI 390 >gi|300934278|ref|ZP_07149534.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium resistens DSM 45100] Length = 424 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--------ADLRDELMPKNILLVG 60 P EI LD Y+IGQ +AKR +A+A+ N ++R ++ +D EL NIL++G Sbjct: 62 PSEIAKFLDTYVIGQDEAKRTLAVAVYNHYKRIKVEEANAGARRSDDEVELSKSNILMLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT +++ LAR PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 122 PTGSGKTYLAQSLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVAKAQR 180 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 59/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G Sbjct: 181 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEFIQF 240 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T ++LFI +GAF P DL + Sbjct: 241 DTKNVLFIVAGAFAGLEKVISERRGKKGLGFGAEISGKKDEEPNPFQFVEPEDLVKFGLI 300 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV H+ L++ +LT+ +++L+ QY+ L + +G+ L FT++++ +A Sbjct: 301 PELIGRLPVVTHVGHLDEDALVRVLTEPKNSLVRQYQRLFEMDGVRLSFTDEALQEIAQQ 360 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAE 417 A+ + GAR L+++ME +L I F+ + EKT VVI E Sbjct: 361 ALARET-----GARGLRSIMESILLPIMFAIPE-DEKTGEVVITGE 400 >gi|15639499|ref|NP_218949.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum str. Nichols] gi|189025738|ref|YP_001933510.1| ATP-dependent protease ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum SS14] gi|6225173|sp|O83521|CLPX_TREPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238689324|sp|B2S3A2|CLPX_TREPS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|3322800|gb|AAC65496.1| ATP-dependent Clp protease subunit X (clpX) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018313|gb|ACD70931.1| ATP-dependent Clp protease subunit X [Treponema pallidum subsp. pallidum SS14] gi|291059885|gb|ADD72620.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema pallidum subsp. pallidum str. Chicago] Length = 415 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 57/218 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQDMLRV 236 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------L 312 +T +ILFI GAF V AD L Sbjct: 237 DTSNILFICGGAFVGLDGIVGTRVCKNPVGFGADVKTVKERGLQLMHEDVIPDDLVKFGL 296 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PEI GR PV V L +L+K D R IL + ++ Q++ L + + L F ED++DA+A Sbjct: 297 IPEIIGRLPVTVALDALSKEDLRNILVRPRNAIVRQFEALFALDDVRLVFDEDALDAIAQ 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 A++ + GAR L++++ER++ D F A L+ K Sbjct: 357 QAIDQKT-----GARGLRSIVERLMLDAMFEAPSLKGK 389 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPK-NILLVGPTGVG 65 +P E+ + LD+Y+IGQ AKR +++A+ N ++R D+ L+ K N+LL+GPTG G Sbjct: 63 TPLELKAYLDQYVIGQDLAKRVLSVAVYNHYKRVAGRSLDIDSVLIEKSNVLLIGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ L++ PF + T TE GYVG +VE I+ LV A Sbjct: 123 KTLLAKTLSQKMKVPFAIADATTLTEAGYVGEDVENILLKLVQNA 167 >gi|313633468|gb|EFS00292.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria seeligeri FSL N1-067] gi|313638158|gb|EFS03414.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria seeligeri FSL S4-171] Length = 419 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F +++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEATLVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E ++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEHIMLEVMF 379 >gi|291276286|ref|YP_003516058.1| ATP-dependent clp protease ATP-binding subunit ClpX [Helicobacter mustelae 12198] gi|290963480|emb|CBG39310.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter mustelae 12198] Length = 425 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 F+P+E+ +LD Y+IGQ+ AK+ ++A+ N ++R +Q A+ E+ NIL +GPTG Sbjct: 68 FTPKELKQKLDDYVIGQERAKKVFSVAIYNHYKRILSRQHAAEDDVEIAKSNILFIGPTG 127 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ +A+ P + T TE GYVG +VE I+ L+ A V ++R Sbjct: 128 SGKTLMAQTIAKALNVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVARAQR 183 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + + Sbjct: 184 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQM 243 Query: 292 NTDHILFIASGAFH-----VSR---------------------------------PADLL 313 +T ILF+ GAF + R ++ Sbjct: 244 DTSDILFVCGGAFDGLSEIIKRRLGKNVLGFGTEKKEKQLDEENILQFVETDDLIAYGMI 303 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR V L+ + K I+T ++ +I QYK+L + + L F E +++ +AD+ Sbjct: 304 PEFIGRLHVIATLEMITKEAMMSIMTKPKNAIIKQYKKLFALDDVGLVFEEAALEKIADL 363 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + IGAR L+ ++E + D+ F L+ V+I E V Sbjct: 364 AI-----IRKIGARGLRAIVEEICTDVMFDLPSLKGYDVIITQEAV 404 >gi|271965030|ref|YP_003339226.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] gi|270508205|gb|ACZ86483.1| ATP-dependent protease ATP-binding subunit [Streptosporangium roseum DSM 43021] Length = 431 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-ELMPKNILLV 59 PREI L++Y++GQ+ AK+ +++A+ N ++R + PA+ EL NILL+ Sbjct: 64 PREIYEFLEQYVVGQESAKKTLSVAVYNHYKRIRPGAAGNGRPPAEKEPVELGKSNILLI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GPTGCGKTYLAQTLARMLDVPFAIADATALTEAGYVGEDVENILLKLLQAA 174 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 184 GIVYIDEIDKVARKGENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFIQI 243 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI GAF R P DLL Sbjct: 244 DTGNVLFIVGGAFAGLEQIIEQRAGRRGAGFGAAIPAREEQEKQDAFAEVMPEDLLKFGL 303 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE+ GR PV + L+++ ILT+ + LI QY++L + +G+ L+F E ++ A+A+ Sbjct: 304 IPELVGRLPVLSTFQPLDRTALVRILTEPRNALIKQYQKLFEIDGVELEFAEGAVGAIAE 363 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR + V+E VL ++ + Sbjct: 364 QAL-LRRT----GARATRAVLEEVLLNVMY 388 >gi|297587290|ref|ZP_06945935.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna ATCC 53516] gi|297575271|gb|EFH93990.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna ATCC 53516] Length = 411 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD Y+I Q++ K+A+A+A+ N ++R + ++L + EL NILLVGPTG G Sbjct: 62 PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++ LA++ PF + T TE GYVG +VE +I L+ A Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233 Query: 292 NTDHILFIASGAF----------------------------HVS------RPADLL---- 313 +T +ILFI GAF +S RP DL+ Sbjct: 234 DTKNILFIVGGAFDGLEKIIEKRTETKSIGFGADLGENEHKRISELFKDIRPEDLIKFGL 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ IL + ++ +I QY+EL K + + L+F ED++ A+A Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIKILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +A + + GAR L+T++E+ L +I F Q+ + VI Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390 >gi|167855228|ref|ZP_02477998.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219872048|ref|YP_002476423.1| ATP-dependent protease ATP-binding subunit ClpX [Haemophilus parasuis SH0165] gi|167853681|gb|EDS24925.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis 29755] gi|219692252|gb|ACL33475.1| ATP-dependent protease ATP-binding subunit [Haemophilus parasuis SH0165] Length = 416 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 9/107 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R L L D EL NILL+G Sbjct: 67 TPHEIHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRNALSDNKESEGVELGKSNILLIG 124 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 125 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 171 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + + VS EGVQ+ LL L+EG+ +++ + G + Sbjct: 184 GIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQETIPV 243 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 244 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKF 303 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L K EG+ L FT+D++ A+ Sbjct: 304 GLIPELIGRLPVITPLEELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAI 363 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A A++ + GAR L++++E +L D + L+ V + V Sbjct: 364 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPSLKASKVTVSKNCV 407 >gi|304437816|ref|ZP_07397765.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369173|gb|EFM22849.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 431 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 190 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 248 Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311 ++T +ILFI GAF H P D Sbjct: 249 IKVDTKNILFIVGGAFVGIEKIIAKRLKKGNVAMGFGAEVRGKDLEKEYDALIHQVTPED 308 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+ PEI GR PV L++L++ ILT+ + + QY++L+ +G+ L FTED+ Sbjct: 309 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVELVFTEDA 368 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A+ + GAR L+ ++E V+ D+ F Sbjct: 369 LRAVAKKAIERKT-----GARSLRGIIEEVMLDVMF 399 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P I LD YII Q AK+ +A+A+ N ++R + + ++ E+ N++++GP+G Sbjct: 76 PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKTA+ L++L PF + + TE G+VG +VE +R+L A Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181 >gi|156741458|ref|YP_001431587.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus castenholzii DSM 13941] gi|156232786|gb|ABU57569.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseiflexus castenholzii DSM 13941] Length = 436 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG +Y S Sbjct: 190 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGCVAHVPPVPGRKHPQQEYISF 249 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T H+LFI GAF H P+D +P Sbjct: 250 DTTHVLFICGGAFEGLDKIIDQRIGGKRSIGFHAGEPSDAPTSLLSQVTPDDLLRYGFIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+K ILT+ + +I QY++++ + + L+ T D+++A+AD A Sbjct: 310 EFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDALEAIADRA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L+T++E +L D+ + + +I+AE V Sbjct: 370 LRSKT-----GARALRTIVEDILLDVMYEVPSQEHIGRCIINAEVV 410 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR + LD+Y+IGQ AK +++A+ N ++R + D E+ NILL+GPTG GK Sbjct: 77 TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQSADDIEIGKSNILLIGPTGSGK 136 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 180 >gi|289434551|ref|YP_003464423.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170795|emb|CBH27337.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 419 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F +++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E ++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEHIMLEVMF 379 >gi|225459904|ref|XP_002264217.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 665 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 15/118 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD---ELM 52 +P+EI LD+++IGQ+ AK+ +++A+ N ++R + +++ D EL Sbjct: 248 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHGSLQKGSGAESGTSEVDDDSVELE 307 Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+LL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ VA Sbjct: 308 KSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVA 365 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 70/257 (27%) Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284 L + TV ++Q + G+V++DE DKI + + VS EGVQ+ LL ++EG+ V Sbjct: 358 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIV 416 Query: 285 ST-KYGS----------INTDHILFIASGAF----------------HVSRPA------- 310 + + G+ I+T ILFI GAF P Sbjct: 417 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTG 476 Query: 311 -----------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 L+PE GRFP+ V L +L + +LT+ ++ L Sbjct: 477 GLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGK 536 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QYK+L + L FTE ++ +A A+ V + GAR L+ ++E +L + + D+ Sbjct: 537 QYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRALLESILTEAMYEIPDV 591 Query: 408 QEK-----TVVIDAEYV 419 + VV+D E V Sbjct: 592 KTGKDRVDAVVVDEESV 608 >gi|145219376|ref|YP_001130085.1| ATP-dependent protease ATP-binding subunit [Prosthecochloris vibrioformis DSM 265] gi|189044142|sp|A4SDM4|CLPX_PROVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|145205540|gb|ABP36583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium phaeovibrioides DSM 265] Length = 438 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 75/116 (64%), Gaps = 5/116 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPK-NILLVGPTG 63 SP+ ++ LD+Y++GQ+ AK+A+++A+ N ++R Q+ D + ++ K NI+L+GPTG Sbjct: 81 SPKALMESLDQYVVGQERAKKALSVAVYNHYKRIDSQEWQHDDDEVVIEKSNIMLIGPTG 140 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ + N+ R R Sbjct: 141 TGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 196 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 61/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 197 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 254 Query: 290 SINTDHILFIASGAFH-----VSR---------------------PA------------- 310 +INT +ILFI GAF ++R P Sbjct: 255 NINTKNILFICGGAFEGLDRLIARRMSKSSMGFGAGVADKKAGYDPGILKFVMQDDLHEY 314 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L++ R IL + ++ LI QY +L + +G+ L+F +S+D + Sbjct: 315 GLIPEFIGRLPVLSSLEPLDEHALRSILVEPKNALIKQYAKLFEMDGVELEFAPESLDRV 374 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 +A+ + GAR L++V+E V+ DI F ++ Sbjct: 375 VAIALERGT-----GARALRSVLENVMIDIMFELPSMK 407 >gi|157828915|ref|YP_001495157.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933640|ref|YP_001650429.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia rickettsii str. Iowa] gi|166215199|sp|A8GTC4|CLPX_RICRS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189044145|sp|B0BUW3|CLPX_RICRO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157801396|gb|ABV76649.1| ATP-dependent protease ATP-binding subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908727|gb|ABY73023.1| ClpX [Rickettsia rickettsii str. Iowa] Length = 425 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYIQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTVLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + + L + +++ +A+ Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALETIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E +L D + ++L+++ V I E V Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|326330781|ref|ZP_08197082.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardioidaceae bacterium Broad-1] gi|325951311|gb|EGD43350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nocardioidaceae bacterium Broad-1] Length = 430 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 13/115 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD----------ELMPKN 55 P+EI L+ Y+IGQ+ AK+++A+A+ N ++R Q P + E+ N Sbjct: 64 PKEIFDFLNSYVIGQEQAKKSLAVAVYNHYKRVQAGLQPGGPQGPGKHAKEEQVEVAKSN 123 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 IL++GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 ILVIGPTGCGKTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 178 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 188 GIIYIDEIDKVARKAENPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPHQEFIQI 247 Query: 292 NTDHILFIASGAF----HV------------------------------SRPADL----- 312 +T +ILF+ GAF H+ RP DL Sbjct: 248 DTTNILFVVGGAFAGLEHIIEQRVGKKTLGFTAEVRGKAEKESEDLLKLVRPEDLTKFGL 307 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ ++ L+++ ILT+ + L+ QY++L +G+ L+FT+D++ A+AD Sbjct: 308 IPEFIGRLPLIASVEKLDQAALVKILTEPRNALVKQYQKLFDLDGVDLEFTDDAVTAIAD 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ + GAR L+ ++E VL Sbjct: 368 KALERGT-----GARGLRAIIEEVL 387 >gi|16803308|ref|NP_464793.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes EGD-e] gi|46907495|ref|YP_013884.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes serotype 4b str. F2365] gi|47093916|ref|ZP_00231655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes str. 4b H7858] gi|47097411|ref|ZP_00234960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes str. 1/2a F6854] gi|217964589|ref|YP_002350267.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes HCC23] gi|224499060|ref|ZP_03667409.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes Finland 1988] gi|224501786|ref|ZP_03670093.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes FSL R2-561] gi|226223871|ref|YP_002757978.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria monocytogenes Clip81459] gi|254824671|ref|ZP_05229672.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes FSL J1-194] gi|254828631|ref|ZP_05233318.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes FSL N3-165] gi|254829975|ref|ZP_05234630.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes 10403S] gi|254852678|ref|ZP_05242026.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes FSL R2-503] gi|254898567|ref|ZP_05258491.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes J0161] gi|254911943|ref|ZP_05261955.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes J2818] gi|254932415|ref|ZP_05265774.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262] gi|254936269|ref|ZP_05267966.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes F6900] gi|255025712|ref|ZP_05297698.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes FSL J2-003] gi|255030295|ref|ZP_05302246.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes LO28] gi|255520250|ref|ZP_05387487.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes FSL J1-175] gi|284801653|ref|YP_003413518.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5578] gi|284994795|ref|YP_003416563.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5923] gi|290894517|ref|ZP_06557470.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes FSL J2-071] gi|300765304|ref|ZP_07075288.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes FSL N1-017] gi|21263464|sp|Q8Y7K9|CLPX_LISMO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|61211533|sp|Q720F3|CLPX_LISMF RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|254763852|sp|B8DHN7|CLPX_LISMH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|259491262|sp|C1L2H6|CLPX_LISMC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|16410684|emb|CAC99346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria monocytogenes EGD-e] gi|46880763|gb|AAT04061.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes serotype 4b str. F2365] gi|47014210|gb|EAL05194.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes str. 1/2a F6854] gi|47017702|gb|EAL08496.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes str. 4b H7858] gi|217333859|gb|ACK39653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes HCC23] gi|225876333|emb|CAS05042.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601030|gb|EEW14355.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes FSL N3-165] gi|258605996|gb|EEW18604.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes FSL R2-503] gi|258608858|gb|EEW21466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes F6900] gi|284057215|gb|ADB68156.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5578] gi|284060262|gb|ADB71201.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes 08-5923] gi|290555929|gb|EFD89490.1| ATP-dependent protease ATP-binding subunit [Listeria monocytogenes FSL J2-071] gi|293583972|gb|EFF96004.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262] gi|293589904|gb|EFF98238.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes J2818] gi|293593910|gb|EFG01671.1| ATP-dependent Clp protease ATP-binding subunit clpX [Listeria monocytogenes FSL J1-194] gi|300513987|gb|EFK41050.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes FSL N1-017] gi|307570847|emb|CAR84026.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria monocytogenes L99] gi|313609092|gb|EFR84801.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria monocytogenes FSL F2-208] gi|328468558|gb|EGF39558.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes 1816] gi|328475113|gb|EGF45897.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria monocytogenes 220] gi|332311713|gb|EGJ24808.1| ATP-dependent Clp protease [Listeria monocytogenes str. Scott A] Length = 419 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKDDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F ++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379 >gi|16800375|ref|NP_470643.1| ATP-dependent protease ATP-binding subunit ClpX [Listeria innocua Clip11262] gi|315282077|ref|ZP_07870567.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria marthii FSL S4-120] gi|21263473|sp|Q92C84|CLPX_LISIN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|16413780|emb|CAC96538.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Listeria innocua Clip11262] gi|313614279|gb|EFR87933.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria marthii FSL S4-120] gi|313623989|gb|EFR94087.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria innocua FSL J1-023] Length = 419 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F ++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379 >gi|315302900|ref|ZP_07873639.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria ivanovii FSL F6-596] gi|313628732|gb|EFR97126.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria ivanovii FSL F6-596] Length = 419 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F +++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPEALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379 >gi|227833710|ref|YP_002835417.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium aurimucosum ATCC 700975] gi|262184717|ref|ZP_06044138.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium aurimucosum ATCC 700975] gi|254763843|sp|C3PI25|CLPX_CORA7 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|227454726|gb|ACP33479.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium aurimucosum ATCC 700975] Length = 431 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRDELMPKNI 56 P EI + LD+Y+IGQ AKR +++A+ N ++R ++ D E+ NI Sbjct: 68 PSEISAFLDKYVIGQDQAKRVLSVAVYNHYKRIKAEEAAGLEGRRKKAQDEEVEISKSNI 127 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L++GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 57/216 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYG 289 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 189 QHGIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFI 248 Query: 290 SINTDHILFIASGAF----------------------------------HVSRPADL--- 312 ++T +ILFI +GAF RP DL Sbjct: 249 QLDTTNILFIVAGAFAGLDKVISERVGKKGVGFGAKLETKDEKESVDFFSQVRPEDLVKF 308 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE GR PV + +L++ +L + +++L+ QY+ L +G L F +++++A+ Sbjct: 309 GLIPEFIGRLPVVATVDNLDRESLVKVLVEPKNSLVKQYQRLFSMDGAELHFEDEALEAI 368 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 A++A+ + GAR L+ +ME +L I + D Sbjct: 369 AELALERKT-----GARGLRAIMEELLVPIMYDLPD 399 >gi|167761340|ref|ZP_02433467.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704] gi|167661006|gb|EDS05136.1| hypothetical protein CLOSCI_03748 [Clostridium scindens ATCC 35704] Length = 475 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 72/114 (63%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I ++LD Y++GQ+ AK+A+++A+ N ++R + D D E+ N+L++GPTG G Sbjct: 124 APHKIKAKLDDYVVGQEYAKKAMSVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 181 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LARL P + T TE GY+G ++E ++ L+ A N + ++ + Sbjct: 182 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAENDIEKAEQ 235 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 236 GIIFIDEIDKIAKKKNSSQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 295 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 296 KNILFICGGAFPDLEGIIKERLTKQSSIGFGADLKDKYDHDKTILEKVTTEDLRNFGMIP 355 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ +N+ IL + ++ ++ QY++L+ + + L F + +++A+A A Sbjct: 356 EFLGRLPIVFTLQGMNEHMLIKILKEPKNAILKQYQKLLALDEVNLLFDDGALEAIAKKA 415 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 416 MK-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITREYIE 457 >gi|120554757|ref|YP_959108.1| ATP-dependent protease ATP-binding subunit ClpX [Marinobacter aquaeolei VT8] gi|166214783|sp|A1U1Q2|CLPX_MARAV RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|120324606|gb|ABM18921.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Marinobacter aquaeolei VT8] Length = 427 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 1/113 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L+ Y+IGQ AK +++A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPAEIRETLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKSDVELGKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++ LAR+ PF + T TE GYVG +VE II+ L+ V +++R Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQR 181 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311 +T +ILFI GAF V D Sbjct: 242 DTGNILFICGGAFAGLDKVIQERSERSSIGFSATVKSQDDSKSTGDIIREVETEDLVKFG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ ILT+ ++ L QY++L EG+ LDF ED++ A+A Sbjct: 302 LIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ + GAR L+++ME L D + S+ VVID ++ Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVIDESVIK 406 >gi|254302271|ref|ZP_04969629.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322463|gb|EDK87713.1| S14 family endopeptidase ClpX [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 423 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S ++++E T+ DA Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDA 411 >gi|94968587|ref|YP_590635.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Koribacter versatilis Ellin345] gi|94550637|gb|ABF40561.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Koribacter versatilis Ellin345] Length = 423 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 6/106 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTGV 64 P E+ + LD Y+IGQ K+ +++A+ N ++R +Q ++ EL NILLVGPTG Sbjct: 69 PLEVKTFLDEYVIGQDQTKKKLSVAVYNHYKRVFMNRQRSGEV--ELQKSNILLVGPTGT 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF V+ T TE GYVG +VE II L+ A Sbjct: 127 GKTLLAQTLAKMLDVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 172 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 62/233 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 182 GIIYIDEIDKIGRKDENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFTPV 241 Query: 292 NTDHILFIASGAF--------------------------------------HVSRPADLL 313 +T +ILFI GAF S P DL+ Sbjct: 242 DTTNILFIVGGAFVGLEKIVGRRLGKRALGFRDEEKEKNFTSANNRDSEMLQRSEPQDLI 301 Query: 314 -----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 PE GR PV L L+++ ILT ++ ++ QY+ L + E + L F+++++ Sbjct: 302 KFGLIPEFVGRLPVMGVLNDLDENALVEILTKPKNAIVKQYQRLFEFENVKLKFSDEAVR 361 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+A A+ +GAR L+ ++E ++ D+ +S S + K + AE V+ Sbjct: 362 AIAREAMQRK-----VGARGLRMILEELMLDLMYSLPSQKRVKEFEVTAEMVQ 409 >gi|291532658|emb|CBL05771.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Megamonas hypermegale ART12/1] Length = 330 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 64/237 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EG V T G Sbjct: 82 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQGLLKMMEGGVVEFTAQGQRKHPEAPT 140 Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311 ++T +ILFI GAF H RP D Sbjct: 141 IKVDTTNILFIVGGAFVGIEEIIAKRLKTDNSGIGFGANVKTKNDKPVFNDLIHKVRPED 200 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+ PEI GR PV L+ L + D ILT+ ++ + QY+EL+ + + L+F D+ Sbjct: 201 LIKFGIIPEIIGRLPVICTLEELTEDDLLKILTEPKNAPVRQYQELLAMDKVKLEFEHDA 260 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 + A+A A+ + GAR L+ ++E V+ DI + E + V+I + + H Sbjct: 261 LLAVAKKAIERKT-----GARSLRGILEDVMLDIMYEIPQSDEPRKVIITKDCIENH 312 >gi|260654936|ref|ZP_05860424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella anthropi E3_33 E1] gi|260630251|gb|EEX48445.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Jonquetella anthropi E3_33 E1] Length = 435 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 57/211 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI++LDE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 184 HGIIYLDEIDKIARKSESVSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPQQEFIA 243 Query: 291 INTDHILFIASGAF-------------HV---------------------SRPADLL--- 313 I+T +ILFI +GAF HV P DL+ Sbjct: 244 IDTRNILFICAGAFDGLEEIIARRLNRHVIGFGGENQERKRDVSYDLLSQVEPEDLIHYG 303 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR P+ V L++L++ +LT+ +++L+ QY+ + EG L+FT ++ A+A Sbjct: 304 FIPELTGRLPLAVALRTLDEDALVRVLTEPKNSLVRQYQAIFAQEGAELEFTPQALRAIA 363 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AVN + GAR L+++ME ++ D+ + Sbjct: 364 QKAVNKKA-----GARGLRSIMENLMLDLMY 389 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P E+ + LD Y+IGQ AK+A+++A+ N +RR A ++ EL N+LL+GPTG Sbjct: 70 PAEMKAFLDEYVIGQDQAKKALSVAVYNHYRRIGWLALAQESEDVELQKSNLLLLGPTGS 129 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 130 GKTLLAQTLARKLNVPFAMSDATTLTEAGYVGEDVENILLRLIQAA 175 >gi|148241164|ref|YP_001226321.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. RCC307] gi|166215217|sp|A5GQ09|CLPX_SYNR3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147849474|emb|CAK26968.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus sp. RCC307] Length = 449 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI + LD ++GQ DAK+ +++A+ N ++R D E L NILL+GP Sbjct: 84 PQEIKAHLDEQVVGQNDAKKVLSVAVYNHYKRLAWQGDGSTEPESSATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMMEVPFAVADATTLTEAGYVGEDVENILLRLLQKADGDVEQAQR 201 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 62/215 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF------------------------------------HVSR---PADL 312 +T ILFI GAF V R P DL Sbjct: 262 DTSQILFICGGAFVGLDDVIQRRMGRNAIGFVPGETRNGRSRQKDQEASQVLRNLEPDDL 321 Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 +PE GR PV L+ L++ ILT+ L+ Q++ L+ + + L+F +++ Sbjct: 322 VKYGLIPEFIGRIPVSAVLEPLDEQALEAILTEPRDALVKQFQTLLSMDSVRLEFQPEAV 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+A A + GAR L+ ++E ++ D+ + Sbjct: 382 RAIAREAHRRKT-----GARALRGIIEDLMLDLMY 411 >gi|320332659|ref|YP_004169370.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus maricopensis DSM 21211] gi|319753948|gb|ADV65705.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus maricopensis DSM 21211] Length = 398 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SPREI + LD ++IGQ +AK+A+A+A+ + ++R P L NILL+GPTG GKT Sbjct: 57 SPREIKAYLDEFVIGQDEAKKALAVAVVSHYQRLAHP---DANLGKSNILLIGPTGTGKT 113 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ LA + PF + T TE GYVG +VE +I L+ A Sbjct: 114 LLASSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 156 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 52/222 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ V + G + Sbjct: 166 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 225 Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317 NT +ILFI GAF + R P DL +PE Sbjct: 226 NTKNILFIVGGAFDGIADIGRSRTNIRSVGFGAEHKGDEKEELRFMPEDLVKFGLIPEFV 285 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L+ L + ILT+ + ++ QY+ L + + L+FTE+++ +A A Sbjct: 286 GRLPLVVQLQDLGEDALVRILTEPQGAIVRQYQALFGFQDVDLNFTEEALQEVARRAKAR 345 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ V+E+ + D+ F + + DAE++ Sbjct: 346 GT-----GARGLRAVLEKSMTDLLFELPAEGLRELRFDAEHI 382 >gi|225465277|ref|XP_002268594.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 639 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49 +P+EI LD ++IGQ+ AK+ +++A+ N ++R + A++ + Sbjct: 189 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 248 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR+ PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 249 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILHKLLMV 308 Query: 110 A 110 A Sbjct: 309 A 309 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI A G VS EGVQ+ LL ++EG+ +V K G I Sbjct: 319 GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 378 Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311 +T ILFI GA F A+ Sbjct: 379 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 438 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +LT+ ++ L QYK+++ + L FTE+ Sbjct: 439 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 498 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L+ ++E++L + F D++ T ++DA V Sbjct: 499 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 547 >gi|169824904|ref|YP_001692515.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna ATCC 29328] gi|167831709|dbj|BAG08625.1| ATP-dependent Clp protease ATP-binding subunit [Finegoldia magna ATCC 29328] Length = 411 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD Y+I Q++ K+A+A+A+ N ++R + ++L + EL NILLVGPTG G Sbjct: 62 PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++ LA++ PF + T TE GYVG +VE +I L+ A Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233 Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313 +T +ILFI GAF +S RP DL+ Sbjct: 234 DTRNILFIVGGAFEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGL 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ IL + ++ +I QY+EL K + + L+F ED++ A+A Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +A + + GAR L+T++E+ L +I F Q+ + VI Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390 >gi|152992701|ref|YP_001358422.1| ATP-dependent protease ATP-binding subunit ClpX [Sulfurovum sp. NBC37-1] gi|151424562|dbj|BAF72065.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurovum sp. NBC37-1] Length = 406 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVG 65 ++P+EI + LD YIIGQ+ AK+ +++A+ N ++R + +D +L N+LL+GPTG G Sbjct: 58 YTPKEINALLDEYIIGQEGAKKTLSVAVYNHYKRIFRNISDDDTQLAKSNVLLIGPTGSG 117 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ +AR P + T TE GYVG +VE I+ L+ Sbjct: 118 KTLLAQTIARFLNVPIAIADATNLTEAGYVGEDVENILTKLL 159 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL L+EGS V+ + I Sbjct: 172 GIVFIDEIDKIARMGENRSITRDVSGEGVQQALLKLIEGSVVNIPPKGGRKHPNQDFIQI 231 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF H+ DL +P Sbjct: 232 DTSNILFICGGAFDGLNDIIKRRLGGNTLGFGQEKRSKSEEENMLHLVESDDLVSYGLIP 291 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + K D IL + +++L+ QY++L + + + L F ED++ +A A Sbjct: 292 ELIGRLHVLATLGKITKEDMVRILIEPKNSLVKQYQKLFEIDDVKLTFEEDALSLIAQKA 351 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ + GAR L+++ME VL DI + +L V+I E V Sbjct: 352 IDRKT-----GARGLRSIMEEVLLDIMYDLPELAGYEVIITEEVV 391 >gi|302379712|ref|ZP_07268197.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia magna ACS-171-V-Col3] gi|303234237|ref|ZP_07320883.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia magna BVS033A4] gi|302312619|gb|EFK94615.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia magna ACS-171-V-Col3] gi|302494778|gb|EFL54538.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Finegoldia magna BVS033A4] Length = 411 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P EI LD Y+I Q++ K+A+A+A+ N ++R + ++L + EL NILLVGPTG G Sbjct: 62 PIEIKDVLDDYVIKQEEGKKALAVAVYNHYKR--INSNLMNNDVELQKSNILLVGPTGSG 119 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++ LA++ PF + T TE GYVG +VE +I L+ A Sbjct: 120 KTLLAETLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAA 164 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 174 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQV 233 Query: 292 NTDHILFIASGAFH----------------------------VS------RPADLL---- 313 +T +ILFI GAF +S RP DL+ Sbjct: 234 DTRNILFIVGGAFEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDIRPEDLIKFGL 293 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L++ IL + ++ +I QY+EL K + + L+F ED++ A+A Sbjct: 294 IPEFVGRIPVLVTLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAK 353 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +A + + GAR L+T++E+ L +I F Q+ + VI Sbjct: 354 LAYDRKT-----GARGLRTIIEKSLMNIMFELPSRQDISKVI 390 >gi|238926708|ref|ZP_04658468.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] gi|238885465|gb|EEQ49103.1| ATP-dependent protease ATP-binding subunit [Selenomonas flueggei ATCC 43531] Length = 431 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 190 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 248 Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311 ++T +ILFI GAF H P D Sbjct: 249 IKVDTKNILFIVGGAFVGIEKIIAKRLKKGNVAMGFGAEVRGKDLEKEYDALIHQVTPED 308 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+ PEI GR PV L++L++ ILT+ + + QY++L+ +G+ L FTED+ Sbjct: 309 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYQQLLAMDGVELVFTEDA 368 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A+ + GAR L+ ++E V+ D+ F Sbjct: 369 LRAVAKKAIERKT-----GARSLRGIIEEVMLDVMF 399 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGV 64 P I LD YII Q AK+ +A+A+ N ++R + + ++ E+ N++++GP+G Sbjct: 76 PHLIKEYLDTYIINQDRAKKILAVAVYNHYKRMKYGYEKKEDEGTEIEKSNVIMLGPSGC 135 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKTA+ L++L PF + + TE G+VG +VE +R+L A Sbjct: 136 GKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181 >gi|213966172|ref|ZP_03394358.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium amycolatum SK46] gi|213951187|gb|EEB62583.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium amycolatum SK46] Length = 443 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P EI LD Y+IGQ AKR +A+A+ N ++R + +D EL NILL+GPTG G Sbjct: 89 PMEIRDFLDEYVIGQDMAKRTLAVAVYNHYKRLRAAETKSDNDVELQKSNILLLGPTGCG 148 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR PF + T TE GYVG +VE I+ L+ V +++R Sbjct: 149 KTYLAQTLARKLDVPFAIADATSLTEAGYVGEDVENILLKLLQATDFDVEKAQR 202 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 203 GIIYVDEIDKISRKSENTSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKLPNQEFIQF 262 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T ++LFI +GAF V + P DL Sbjct: 263 DTSNVLFIVAGAFAGLEKVVQERVGKKGLGFGADVTSANDEDMKDPFRDVLPEDLVRFGL 322 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ +++L+ QY+ L +G+ L ++++ A+A Sbjct: 323 IPEFIGRLPVIASVTNLDEDALVRVLTEPKNSLVRQYQHLFDMDGVRLTIDDEALRAIAA 382 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A++ N+ GAR L+ +ME +L + F + + T VI Sbjct: 383 KAISRNT-----GARGLRGIMEEILVPVMFEVPERDDVTEVI 419 >gi|159900346|ref|YP_001546593.1| ATP-dependent protease ATP-binding subunit ClpX [Herpetosiphon aurantiacus ATCC 23779] gi|238687098|sp|A9B8B2|CLPX_HERA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|159893385|gb|ABX06465.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Herpetosiphon aurantiacus ATCC 23779] Length = 432 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 2/98 (2%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 LD Y+IGQ AK+ +A+A+ N ++R Q D E+ NILLVGPTG GKT +++ Sbjct: 74 HLDEYVIGQDRAKKVMAVAVYNHYKRLRAQAQGDTDVEIQKSNILLVGPTGSGKTLLAQT 133 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 134 LARMLDVPFAIADATALTEAGYVGEDVETILLRLIQAA 171 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 70/253 (27%) Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS 283 RLI D QM GI+++DE DKI + I VS EGVQ+ LL ++EG Sbjct: 166 RLIQAADGDVDRAQM----GILYIDEIDKIARKADNPSITRDVSGEGVQQALLKILEGGV 221 Query: 284 VST-----------KYGSINTDHILFIASGAF-----HVSR------------------- 308 V+ ++ +T ++LFI GAF H++ Sbjct: 222 VNVPPMPGRKHPQQEFIPFDTTNVLFICGGAFEGLEHHIAERMGSGGTLGFGKTIVKEER 281 Query: 309 ------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 P DLL PE GR PV L L+K ILT+ + +I QY++ Sbjct: 282 LERSKKLLSLVNPDDLLHFGFIPEFIGRMPVVAALTPLDKDAMMRILTEPRNAIIKQYQK 341 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 ++ + + L+ + D+++A+ + A+ G GAR L+T +E +L D+ F DL +T Sbjct: 342 MLALDHVQLEVSGDAMEAIVERAL-----AGKTGARGLRTAVEEILLDVMF---DLPSET 393 Query: 412 ----VVIDAEYVR 420 VI AE VR Sbjct: 394 DVVRCVITAETVR 406 >gi|319900083|ref|YP_004159811.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides helcogenes P 36-108] gi|319415114|gb|ADV42225.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacteroides helcogenes P 36-108] Length = 414 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K + Sbjct: 179 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGAVVNVPPQGGRKHPDQKMIPV 238 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 239 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYGAVRNTSVIDKNNMMQYIAPQDLKSFGLI 298 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L++ R ILT+ ++++I QY +L + + + L F + + + D Sbjct: 299 PEIIGRLPVLTYLNPLDRMALRAILTEPKNSIIKQYIKLFEMDNVKLTFDDAVFEYIVDK 358 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ +GAR L++++E ++ D+ F + V+ +Y + Sbjct: 359 AIEYK-----LGARGLRSIVETIMMDVMFEIPSEHKDNFVVTLDYAK 400 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 3/104 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI + LD+Y+IGQ DAKR +++++ N ++R Q+ D E+ NI++VG TG GK Sbjct: 67 PVEIKNFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKESGD-DVEIEKSNIIMVGSTGTGK 125 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA Sbjct: 126 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169 >gi|162451420|ref|YP_001613787.1| ATP-dependent protease ATP-binding subunit ClpX [Sorangium cellulosum 'So ce 56'] gi|161162002|emb|CAN93307.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sorangium cellulosum 'So ce 56'] Length = 418 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P +I + LD Y++GQ AK+ +A+A+ N ++R D EL NILL+GPTG GKT Sbjct: 67 PADIKATLDEYVVGQNRAKKILAVAVHNHYKRIDSRVSSDDVELSKSNILLLGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF + T TE GYVG +VE II L+ A + V ++R Sbjct: 127 LLAQTLAKIINVPFAIADATTLTEAGYVGEDVENIIVQLLQNADHDVERAQR 178 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ +V K G + Sbjct: 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIIEGTIANVPPKGGRKHPQQDFLQV 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF V +P DLL Sbjct: 239 DTTNILFICGGAFVGLDQIIQRRIGQNTLGFGADIKAKKDFKLGDLLSVVQPEDLLKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L LN+ ILT +++L+ QY++L + +G+ + FT ++ A+A Sbjct: 299 IPEFIGRLPVVATLHELNEEALIDILTKPKNSLVKQYQKLFEMDGVKVKFTRGALVAVAR 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ NS GAR L+ ++E + DI + Sbjct: 359 QALERNS-----GARGLRAILESAMLDIMY 383 >gi|224535962|ref|ZP_03676501.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus DSM 14838] gi|224522417|gb|EEF91522.1| hypothetical protein BACCELL_00826 [Bacteroides cellulosilyticus DSM 14838] Length = 415 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P EI LD+Y+IGQ DAKR +++++ N ++R L D D E+ NI++VG TG GK Sbjct: 68 PLEIKEFLDQYVIGQDDAKRFLSVSVYNHYKRL-LQKDGGDDVEIEKSNIIMVGSTGTGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T ++R +A+L PF V+ T TE GYVG ++E I+ L+ VA V E+ + Sbjct: 127 TLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQ 179 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 97/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ K + Sbjct: 180 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPV 239 Query: 292 NTDHILFIASGAF-------------HVS--------------------RPADL-----L 313 NT +ILFI GAF HV P DL + Sbjct: 240 NTKNILFICGGAFDGIEKKIAQRLNTHVVGYSAVRNTAVIDKSNMMQYIAPQDLKSFGLI 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR PV +L L+++ R ILT+ ++++I QY +L + + + L F + + D Sbjct: 300 PEIIGRLPVLTYLNPLDRAALRSILTEPKNSIIKQYVKLFEMDNVELTFEATVFEYIVDK 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV +GAR L++++E ++ D F Sbjct: 360 AVEYK-----LGARGLRSIVETIMMDAMF 383 >gi|242279531|ref|YP_002991660.1| ATP-dependent protease ATP-binding subunit ClpX [Desulfovibrio salexigens DSM 2638] gi|242122425|gb|ACS80121.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio salexigens DSM 2638] Length = 417 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 SP+EI LD Y+IGQ+ K+ +A+A+ N ++R Q E+ NILL+GPTG Sbjct: 62 LSPQEIKELLDEYVIGQEHPKKILAVAVHNHYKRVYYTQSSGTDDVEIDKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKISRKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF + PADL Sbjct: 238 DTSNILFILGGAFIGLDTIVQQRMSGSGIGFGAKVEQKSDKGISELFAKAEPADLVKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV+ L L++ D IL + ++ L+ QYK++ + +G+ L FT +++ ++A Sbjct: 298 IPEFVGRIPVQTALSELSEEDLVRILQEPKNALVKQYKKMFELDGVRLTFTANALKSIAA 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ V+E ++ DI + Sbjct: 358 KAVERKT-----GARGLRNVLESIMLDIMY 382 >gi|300774297|ref|ZP_07084161.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium gleum ATCC 35910] gi|300506941|gb|EFK38075.1| ATP-dependent Clp protease ATP-binding subunit [Chryseobacterium gleum ATCC 35910] Length = 378 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS V+ KY + Sbjct: 156 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQV 215 Query: 292 NTDHILFIASGAF----------------------------------HVS----RPADLL 313 NT +ILFIA GAF +++ R L+ Sbjct: 216 NTQNILFIAGGAFDGIKEIIERRMNKQAIGFSSEKINKTDEDEYILTNINAIDLRTFGLI 275 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GRFP+ +L L K I+ + +++++ Q+ EL K +G L T+ +I+ + + Sbjct: 276 PELLGRFPIITYLDKLTKETLVRIMKEPKNSIVNQFVELFKMDGTNLVITDGAIEKIVEE 335 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 + +GAR L+ E+VLED FS +EK +++ + V ++ Sbjct: 336 TIEKG-----LGARGLRGTTEKVLEDYMFSIG--EEKEIILTEDNVLIN 377 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI LD+Y+IGQ AK+ ++IA+ N ++R D E L NI+++G TG GK Sbjct: 43 PKEIKEFLDQYVIGQDQAKKQLSIAVYNHYKRLLHAQDENREVELEKSNIIMIGETGTGK 102 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ +AR PF V+ T TE GYVG +VE I+ L+ VA Sbjct: 103 TLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRLLMVA 146 >gi|15892991|ref|NP_360705.1| ATP-dependent protease ATP-binding subunit [Rickettsia conorii str. Malish 7] gi|21263474|sp|Q92GQ4|CLPX_RICCN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|15620188|gb|AAL03606.1| ATP-dependent clp protease ATP-binding subunit clpX [Rickettsia conorii str. Malish 7] Length = 425 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + LD E ID A Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E +L D + ++L+++ V I E V Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|229587051|ref|YP_002845552.1| ATP-dependent protease ATP-binding subunit ClpX [Rickettsia africae ESF-5] gi|259491267|sp|C3PLG9|CLPX_RICAE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|228022101|gb|ACP53809.1| ATP-dependent clp protease ATP-binding subunit ClpX [Rickettsia africae ESF-5] Length = 425 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNIDKEKNNSEILKSLEVEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + LD E ID A Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFE-----LDDAELVIDYSAL 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E +L D + ++L+++ V I E V Sbjct: 351 ETIAEKALAKKTGARGLRSILEHLLLDSMYKVAELKKQRVTITKEVV 397 >gi|163815486|ref|ZP_02206859.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759] gi|158449123|gb|EDP26118.1| hypothetical protein COPEUT_01651 [Coprococcus eutactus ATCC 27759] Length = 525 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 23/158 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + D D E+ N+L+VGPTG G Sbjct: 174 APHKIKAMLDEYVVGQEYAKKVISVAVYNHYKR--VLTDTMDDIEIEKSNMLMVGPTGCG 231 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120 KT I + +A+L P + T TE GY+G +VE ++ L+ A N V ++ R D Sbjct: 232 KTYIVKTIAKLLQVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAERGIVFID 291 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 E+ + + K SN+R+V + ++ G Sbjct: 292 EIDK--------------IAKKQNSNSRDVSGESVQQG 315 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GIVF+DE DKI + + N VS E VQ+ LL L+EG+ V GS INT Sbjct: 286 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKLLEGADVEVPVGSGSKNAMVPMTTINT 345 Query: 294 DHILFIASGAF---------HVSRPAD------------------------------LLP 314 +ILFI GAF +S+ A ++P Sbjct: 346 RNILFICGGAFPDLEDIIKRRISKQASMGFKAELKDKYDDEPNLLRQVTTEDLRDFGMIP 405 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L +L+K + IL + ++ ++ QYK+L+ + + L F + + +A+A A Sbjct: 406 EFLGRLPVVFTLDALDKDMYIKILKEPKNAILKQYKKLLALDEVDLRFDDSAYEAIASEA 465 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 V + GAR L+ ++E+ + DI + D V I +Y+R Sbjct: 466 VKRKT-----GARALRAIIEKFMLDIMYQIPRDDTIGRVTITGDYIR 507 >gi|300361498|ref|ZP_07057675.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus gasseri JV-V03] gi|300354117|gb|EFJ69988.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus gasseri JV-V03] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FT+ ++ A+AD+ Sbjct: 297 PEFIGRIPIITTLDKLSTEDLIRILTEPKNALVKQYKKLLSLDNVDLEFTDGALKAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + +GAR L++++E L D+ + Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380 >gi|227889795|ref|ZP_04007600.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii ATCC 33200] gi|227849659|gb|EEJ59745.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii ATCC 33200] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FT+ ++ A+AD+ Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A++ + +GAR L++++E L ++ + + SD + V I + + H Sbjct: 357 AISRH-----MGARGLRSIVENSLMNVMYRTPSDDNIQEVQITKDVITKH 401 >gi|329667519|gb|AEB93467.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus johnsonii DPC 6026] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QY++L+ + + L+FT+ ++ A+AD+ Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYEKLLSLDDVDLEFTDGALQAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A++ + +GAR L++++E L D+ + + SD K V I + + H Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 401 >gi|268319667|ref|YP_003293323.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus johnsonii FI9785] gi|262398042|emb|CAX67056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus johnsonii FI9785] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EG Q+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGGQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDVDDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FT+ ++ A+AD+ Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A++ + +GAR L++++E L D+ + + SD + V I + + H Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMYRTPSDDNIQEVQITKDVITKH 401 >gi|119485224|ref|ZP_01619609.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106] gi|119457452|gb|EAW38577.1| ATP-dependent protease ATP-binding subunit [Lyngbya sp. PCC 8106] Length = 445 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRDELMPKNILLVGP 61 P EI + LD ++IGQ +AK+ +++A+ N ++R + ++ EL NILL+GP Sbjct: 83 PIEIKAHLDNHVIGQDEAKKVLSVAVYNHYKRLGFIQGKSRQSSEDNIELQKSNILLIGP 142 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT ++ LA++ PF + T TE GYVG +VE I+ L+ VA V E++R Sbjct: 143 TGSGKTLLAETLAKMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADFDVEEAQR 200 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 201 GIVYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 260 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILF+ GAF P DL Sbjct: 261 DTSNILFVCGGAFVGLDRIIDQRTGKKSMGFIQGEKEQVKDQQSPETLKKMEPDDLVKFG 320 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P+ L L++ ILT+ S L+ QY++L++ + + L+F ED+I A+A Sbjct: 321 LIPELIGRIPMVAVLDPLDEKTLMAILTEPRSALVKQYQKLLRMDNVQLEFEEDAIQAIA 380 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 381 QEAFRRKT-----GARALRGIVEELMLDVMY 406 >gi|320535321|ref|ZP_08035440.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema phagedenis F0421] gi|320147821|gb|EFW39318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Treponema phagedenis F0421] Length = 414 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 57/218 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 176 GIIFIDEIDKISRKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQDMLKI 235 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADL----- 312 +T +ILFI GAF +S+ P DL Sbjct: 236 DTSNILFICGGAFVGLDKIVEARISQHPIGFGADIKTIKDKRLDELYDNLSPDDLVKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PEI GR P+ V L L K D R ILT+ + +I Q++ K + + L F +++A+A Sbjct: 296 IPEIIGRLPITVALNELTKDDLRKILTEPRNAIIKQFEASFKQDDVKLIFENSALNAIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 +A++ N+ GAR L++++E+++ D F A ++ K Sbjct: 356 LAIDQNT-----GARGLRSIVEKLMLDAMFEAPSIKGK 388 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPK-NILLVGPTGVG 65 +P E LD+YIIGQ AKR +++A+ N ++R P + D ++ K N+LLVGPTG G Sbjct: 62 TPAEFKEYLDQYIIGQDKAKRVLSVAVYNHYKRIINKPKEKDDVVIEKSNVLLVGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 KTLLAKTLAQKMKVPFAIADATTLTEAGYVGEDVENILLKLIQNA 166 >gi|160895261|ref|ZP_02076033.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50] gi|156863140|gb|EDO56571.1| hypothetical protein CLOL250_02821 [Clostridium sp. L2-50] Length = 488 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 21/157 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R L + D E+ N+L+VGPTG GK Sbjct: 130 APHKIKAMLDEYVIGQEYAKKVMSVAVYNHYKRV-LTDSMDDIEIEKSNMLMVGPTGCGK 188 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DE 121 T I + +A+L P + T TE GY+G +VE ++ L+ A N V ++ + DE Sbjct: 189 TYIVKTIAKLLNVPLAITDATTLTEAGYIGDDVESVLSKLLAAADNDVEKAEKGIVFIDE 248 Query: 122 VREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 + + + K SN+R+V + ++ G Sbjct: 249 IDK--------------IAKKQNSNSRDVSGESVQQG 271 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GIVF+DE DKI + + N VS E VQ+ LL ++EG+ + GS +NT Sbjct: 242 GIVFIDEIDKIAKKQNSNSRDVSGESVQQGLLKILEGAEIEVPVGSGSKNAMVPMTTMNT 301 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 302 KNILFICGGAFPAIEDIIKARLNKQSSIGFRADLKDKYDKDPNILKQVTNEDLREFGMIP 361 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L +L+K + IL + ++ ++ QYK+L+ + + L F + + +A+A+ A Sbjct: 362 EFLGRLPVLFTLDALDKDMYIKILKEPKNAILKQYKKLLALDEVDLQFDDSAYEAIAEKA 421 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + N+ GAR L+ ++E + DI + D V+I +YV Sbjct: 422 MKKNT-----GARALRAIIEEFMLDIMYQIPRDDSIGRVIITGDYV 462 >gi|58699474|ref|ZP_00374209.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila ananassae] gi|58534008|gb|EAL58272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila ananassae] Length = 425 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ ++ + Sbjct: 182 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF H +P DL+ Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ D +LT+ + LI QYK L+ + L+F++++I A+A Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 A++ + GAR L+ ++E +L DI +++ + + T+VI + V L Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGSFEGSTIVITKKMVEL 407 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 MKL P +I + L ++++GQ+ A+ +++A+ N + Q A E+ NI+L+ Sbjct: 63 MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GPTG GKT +++ LA+++ PF + T TE GYVG +VE ++ L+ A ++V+ R Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181 >gi|34762746|ref|ZP_00143735.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887596|gb|EAA24676.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 258 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS 282 GI+++DEFDKI + I VS EGVQ+ LL ++EG+ Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGT 228 >gi|328676004|gb|AEB28679.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Francisella cf. novicida 3523] Length = 417 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ +AK+ +++A+ N ++R D EL N+LL+GPTG GK Sbjct: 59 PVEIKKYLDDYIIGQDNAKKVLSVAVYNHYKRITSNPTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 62/227 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T +ILFI GAF + AD Sbjct: 232 DTTNILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTDKLMQKIESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++FT+ + +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVRILTEPKNALIKQYIKLFKFDDVSIEFTDQAFVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F S+ D+ EK ++ D Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSEDI-EKVIIND 392 >gi|238853432|ref|ZP_04643811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri 202-4] gi|238834004|gb|EEQ26262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri 202-4] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FTE ++ A+AD+ Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + +GAR L++++E L D+ + Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380 >gi|238651008|ref|YP_002916864.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii str. Rustic] gi|259491268|sp|C4K2L5|CLPX_RICPU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238625106|gb|ACR47812.1| ATP-dependent protease ATP-binding subunit [Rickettsia peacockii str. Rustic] Length = 425 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P++I L+ Y++GQ AK+ +A+A+ N ++R + + EL NILL+GPTG G Sbjct: 62 TPQKICGILNDYVVGQDQAKKILAVAVYNHYKRLEYVQSGNNDVELNKSNILLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT +++ LA++ PF + T TE GYVG +VE I +R L+ NI + + Sbjct: 122 KTLLAQTLAKILDVPFTMADATSLTEAGYVGEDVENILLRLLIASEFNIAKAQK 175 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S + + Sbjct: 176 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQDFVQL 235 Query: 292 NTDHILFIASGAF------------HVS---------------------------RPADL 312 +T +ILFI GAF H S L Sbjct: 236 DTSNILFICGGAFMGIDSIITSRTNHSSIGFAANVNMDKEKNNSEILKSLEIEDLTKFGL 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ L L+K ILT ++ ++ QY++ + + L + +++ +A+ Sbjct: 296 IPEFIGRLPIVTTLDELDKEALITILTKPKNAIVKQYQKQFELDDAELVIDDSALETIAE 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A+ + GAR L++++E +L D + ++L+ + V I E V Sbjct: 356 KALAKKT-----GARGLRSILEHLLLDSMYKVAELKRQRVTITKEVV 397 >gi|116629801|ref|YP_814973.1| ATP-dependent protease ATP-binding subunit [Lactobacillus gasseri ATCC 33323] gi|311110558|ref|ZP_07711955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri MV-22] gi|122273261|sp|Q042T7|CLPX_LACGA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116095383|gb|ABJ60535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Lactobacillus gasseri ATCC 33323] gi|311065712|gb|EFQ46052.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri MV-22] Length = 421 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLR-DELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FTE ++ A+AD+ Sbjct: 297 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + +GAR L++++E L D+ + Sbjct: 357 AISRH-----MGARGLRSIVENSLMDVMY 380 >gi|58696872|ref|ZP_00372387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila simulans] gi|225630254|ref|YP_002727045.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp. wRi] gi|225677383|ref|ZP_03788352.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|58536915|gb|EAL60095.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila simulans] gi|225590573|gb|EEH11831.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592235|gb|ACN95254.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia sp. wRi] Length = 425 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 59/231 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL ++EG+ ++ + Sbjct: 182 GIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQV 241 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF H +P DL+ Sbjct: 242 DTSNILFICGGAFEGLDKIIEARKKGTSVGFGADISQSKEQKKKNALHDVQPEDLIKFGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L L+ D +LT+ + LI QYK L+ + L+F++++I A+A Sbjct: 302 IPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSKVNLEFSDEAISAIAK 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 A++ + GAR L+ ++E +L DI +++ + + T+VI + V L Sbjct: 362 KAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVITKKMVEL 407 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 MKL P +I + L ++++GQ+ A+ +++A+ N + Q A E+ NI+L+ Sbjct: 63 MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GPTG GKT +++ LA+++ PF + T TE GYVG +VE ++ L+ A ++V+ R Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181 >gi|302669568|ref|YP_003829528.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio proteoclasticus B316] gi|302394041|gb|ADL32946.1| ATP-dependent Clp protease ATP-binding subunit ClpX1 [Butyrivibrio proteoclasticus B316] Length = 502 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65 +P +I ++LD Y+IGQ AK+ +++A+ N ++R + D DE+ NILL+GPTG G Sbjct: 140 APHKIKAKLDEYVIGQDQAKKVMSVAVYNHYKR--VATDTMDEIEIEKSNILLLGPTGSG 197 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 198 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKTEH 251 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 55/209 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + VS E VQ+ +L L+EGS+V G ++N Sbjct: 251 HGIIFIDEIDKIAKKKNTTSRDVSGESVQQGMLKLLEGSNVEVPVGAGSKNAMVPLATVN 310 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 311 TRNILFICGGAFPDLEDIITQRLNKQTSIGFDADLKDKYEDDPNILSKVTVDDLKKFGMI 370 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L K IL + ++ ++ QY++L+ + + L F + +++A+A+ Sbjct: 371 PEFLGRLPIICSLQALTKDMLVKILKEPKNAILKQYQKLLALDEVDLLFDDTALEAIAEK 430 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ D GAR L+ ++E + DI + Sbjct: 431 ALE-----KDTGARALRAIIEEFMLDIMY 454 >gi|323485619|ref|ZP_08090959.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum WAL-14163] gi|323401058|gb|EGA93416.1| hypothetical protein HMPREF9474_02710 [Clostridium symbiosum WAL-14163] Length = 488 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60 +P I S LD Y+IGQ+ AK+ +++A+ N ++R L +DE + NIL++G Sbjct: 137 APHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKVQIEKSNILMIG 196 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 197 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 255 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + VS E VQ++LL L+EGS V GS ++ Sbjct: 255 HGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVD 314 Query: 293 TDHILFIASGAF--------------------------HVSRPA-------------DLL 313 T+HILFI GAF + S P ++ Sbjct: 315 TNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESDPDILTKVTTEDLRTFGMI 374 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ V L++L K +L + ++ ++ QY +L++ + + L F +++++ +A+ Sbjct: 375 PEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLELDEVKLVFEDEALEWIAEE 434 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E + DI + D +VVI Y+ Sbjct: 435 AIK-----KETGARALRAIIEEFMLDIMYEIPKDSNIGSVVITRAYL 476 >gi|298529125|ref|ZP_07016528.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfonatronospira thiodismutans ASO3-1] gi|298510561|gb|EFI34464.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfonatronospira thiodismutans ASO3-1] Length = 417 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P E+ LD Y++GQ+ K+ +A+A+ N ++R + +D EL NILL+GPTG Sbjct: 63 LPPSELKKALDDYVVGQEKTKKLLAVAVYNHYKRVRYIKKQKDDVELDKSNILLIGPTGS 122 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 GKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLMQNA 168 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 57/216 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYVDEIDKIARKSDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFIA GAF ++ PADL+ Sbjct: 238 DTSNILFIAGGAFIGMDKIVRERVQKGSMGFGAELGSQFGATPNELISMAHPADLIKYGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L + D ILT+ ++ L+ QY+++ + + I L FT++++ A+A Sbjct: 298 IPEFVGRIPVVSSLEELTEDDLVRILTEPKNALVKQYQKMFELDDINLKFTQNALRAIAA 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A+ + GAR L+ VME ++ D+ ++ LQ Sbjct: 358 KALERKT-----GARGLRNVMESIMMDVMYNLPSLQ 388 >gi|313619225|gb|EFR90986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Listeria innocua FSL S4-378] Length = 362 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--LMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R DE L NI L+GPTG GK Sbjct: 7 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTGSGK 66 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 67 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 110 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 120 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 179 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 180 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 239 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F ++ +A A Sbjct: 240 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 299 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 300 IERKT-----GARGLRSIIEQIMLEVMF 322 >gi|42518937|ref|NP_964867.1| ATP-dependent protease ATP-binding subunit [Lactobacillus johnsonii NCC 533] gi|61211574|sp|Q74JU4|CLPX_LACJO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|41583224|gb|AAS08833.1| ATP-dependent clp protease ATP-binding subunit clpX [Lactobacillus johnsonii NCC 533] Length = 421 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 64 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 167 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 236 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 237 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FT+ ++ A+AD+ Sbjct: 297 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A++ +GAR L++++E L D+ + + SD K V I + + H Sbjct: 357 AISRR-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 401 >gi|317508502|ref|ZP_07966169.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974] gi|316253193|gb|EFV12596.1| ATP-dependent Clp protease [Segniliparus rugosus ATCC BAA-974] Length = 426 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL-RD-----ELMPKNILLVGPT 62 P EI L+ Y++GQ AKR +A+A+ N ++R Q L RD EL NIL++GPT Sbjct: 64 PAEIREFLEGYVVGQDPAKRTLAVAVYNHYKRIQAGDKLGRDGKGGVELAKSNILMLGPT 123 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI +GAF V R P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGERVGRRGLGFGAQIRTREDVETRDYFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K ILT+ ++ L+ QY+ L + + + L+F +++++A+AD Sbjct: 301 IPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFNKEAVEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + S D+ + VVI E VR ++ Sbjct: 361 QAL-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVITEETVRENV 407 >gi|256028616|ref|ZP_05442450.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp. D11] gi|289766534|ref|ZP_06525912.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium sp. D11] gi|289718089|gb|EFD82101.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium sp. D11] Length = 424 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S ++++E T+ D Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411 >gi|134097948|ref|YP_001103609.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|291009142|ref|ZP_06567115.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharopolyspora erythraea NRRL 2338] gi|133910571|emb|CAM00684.1| putative Clp protease ATP-binding subunit [Saccharopolyspora erythraea NRRL 2338] Length = 427 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----DLRDE---LMPKNILLVGP 61 P EI LD+Y+IGQ AKR +++A+ N ++R Q+ + R+E L NIL++GP Sbjct: 64 PAEIHEFLDQYVIGQDPAKRNLSVAVYNHYKRIQVGERTTRESREESVELAKSNILMLGP 123 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 172 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 182 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAF--------------------------------HVS--RPADLL---- 313 +T ++LFI +GAF H + P DL+ Sbjct: 242 DTTNVLFIVAGAFAGLEKIVEDRVGKHSVGFGAELRSKTDLDNADHFADVMPEDLIKYGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P + +L+K ILT+ + LI QYK L + + + L+FT+ +++A+AD Sbjct: 302 IPEFIGRLPTVATVTNLDKPSLVQILTEPRNALIKQYKRLFEMDNVELEFTKTALEAIAD 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423 A+ L T GAR L+ ++E VL + + S SD+ + VVI + VR ++ Sbjct: 362 QAI-LRGT----GARGLRAILEEVLLPVMYDIPSRSDVAK--VVITEQTVRENV 408 >gi|322515315|ref|ZP_08068312.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus ureae ATCC 25976] gi|322118691|gb|EFX90903.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus ureae ATCC 25976] Length = 419 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 66 TPHEIHAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKLVEARTNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVRF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L L++ ILT+ ++ +I QY+ L + EG+ L FT+D++ A+ Sbjct: 303 GLIPELIGRLPVVTPLPELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKDALIAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412 A+ +++ + GAR L++++E +L D ++ L+ EK V Sbjct: 363 AEKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400 >gi|260495116|ref|ZP_05815245.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_33] gi|260197559|gb|EEW95077.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_33] Length = 424 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSIGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S ++++E T+ D Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411 >gi|253581497|ref|ZP_04858722.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium ATCC 27725] gi|251836567|gb|EES65102.1| ATP-dependent protease ATP-binding subunit [Fusobacterium varium ATCC 27725] Length = 416 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDELMPKNILLVGP 61 +P+EI +LD Y+IGQ + K+ +++A+ N ++R D EL N+LL+GP Sbjct: 62 LTPKEIKEKLDEYVIGQDETKKILSVAVYNHYKRILNKNNYGEEDNNVELQKSNVLLIGP 121 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LAR PF + T TE GYVG +VE ++ L+ A Sbjct: 122 TGSGKTLLAQTLARCLSVPFAIADATTLTEAGYVGDDVENVLVRLLQAA 170 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 180 GIIYIDEIDKIARKSENVSITRDVSGEGVQQSLLKIIEGTKSQVPPQGGRKHPNQELIEI 239 Query: 292 NTDHILFIASGAFH------VSR----------------------------PADL----- 312 +T +ILFI GAF SR P DL Sbjct: 240 DTANILFIVGGAFEGLEKVIKSRTNKKVIGFGADVKSETEEKVGEVFVKVLPEDLVRQGI 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV LK L++ ILT+ ++ ++ QYK+L EG+ L+FT +++ +A Sbjct: 300 IPELVGRLPVITTLKDLDEEALIRILTEPKNAIVKQYKKLFDLEGVDLEFTPEALKKIAV 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ IGAR L+ ++E+ + ++ + Sbjct: 360 LALERK-----IGARGLRAIIEQTMLELMY 384 >gi|167750808|ref|ZP_02422935.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702] gi|167656243|gb|EDS00373.1| hypothetical protein EUBSIR_01790 [Eubacterium siraeum DSM 15702] Length = 395 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG S+V + G Sbjct: 141 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 200 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 INT +ILFI GAF H P DL Sbjct: 201 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 260 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L L++ IL++ ++ ++ QY + +GI L+ T+D++ A+A Sbjct: 261 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIA 320 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A + GAR L+TV+E L DI F+A SD V++ E V Sbjct: 321 KKAAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECV 364 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64 P E+ LD+YIIGQ +AK+ + +++ N +++ + AD EL N+LL+GPTGV Sbjct: 28 PTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 86 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT I++ LA + PF + T T+ GYVG +VE ++ L+ A Sbjct: 87 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 132 >gi|149923965|ref|ZP_01912351.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica SIR-1] gi|149815197|gb|EDM74746.1| ATP-dependent protease ATP-binding subunit [Plesiocystis pacifica SIR-1] Length = 416 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67 P++I LD Y++GQ+ AK+ +++A+ N ++R + + EL NILL+GPTG GKT Sbjct: 65 PKDIRVILDDYVVGQERAKKIISVAVYNHYKRINVKNSGDEPELQKSNILLIGPTGSGKT 124 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE II L+ A + V +++R Sbjct: 125 LLAQTLARILDVPFAIADATSLTEAGYVGEDVENIIVSLLQNADHDVEKAQR 176 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV K G + Sbjct: 177 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKILEGTIASVPPKGGRKHPQQDFLQV 236 Query: 292 NTDHILFIASGAF---------HVS----------------RPADLL------------- 313 +T +ILFI GAF VS R DLL Sbjct: 237 DTTNILFICGGAFAGMEDIIESRVSAKTMGFGATLQEKKEKRHWDLLQKVQSEDLMKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV LK L++ ILT+ ++ L+ QYK L++ +G+ L F ED++ A+A Sbjct: 297 IPEFIGRMPVVAPLKELDEEALVSILTEPKNALVKQYKRLLRMDGVELTFAEDALHAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L++++ER + D+ + Sbjct: 357 TAKEQRA-----GARGLRSILERAMLDVMY 381 >gi|303248989|ref|ZP_07335235.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio fructosovorans JJ] gi|302489638|gb|EFL49576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio fructosovorans JJ] Length = 417 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF + PADL+ Sbjct: 238 NTANILFIVGGAFIGLEKIVGQRMRGTAMGFGAKVEARHDDDMSRMLSQAHPADLIKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L K D ILT+ ++ L+ QY++L + + + L FT++++DA+A+ Sbjct: 298 IPEFIGRIPILTSLEELTKDDLVRILTEPKNALVKQYQKLFELDKVRLRFTKNAMDAIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ VME ++ +I + L Sbjct: 358 KAIERKT-----GARGLRNVMESIMLEIMYKLPSL 387 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 P EI LD Y+IGQ+ AK+ +A+A+ N ++R E+ NILL+GPTG Sbjct: 62 LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAAADDVEIDKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 >gi|307261755|ref|ZP_07543421.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868573|gb|EFN00384.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 419 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 66 TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT++++ A+ Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412 A +++ + GAR L++++E +L D ++ L+ EK V Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400 >gi|255505533|ref|ZP_05346675.3| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella formatexigens DSM 14469] gi|255267439|gb|EET60644.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bryantella formatexigens DSM 14469] Length = 498 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 67/112 (59%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I ++LD Y+IGQ+ AK+ +++ + N ++R E+ N+L++GPTG GKT Sbjct: 148 APHKIKAKLDEYVIGQEYAKKVISVGVYNHYKRVATGTMDEIEIEKSNMLMIGPTGCGKT 207 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LARL P + T TE GY+G ++E ++ L+ A N V ++ R Sbjct: 208 YLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAAGNDVEKAER 259 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 260 GIIFIDEIDKIAKKQNATQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLETVNT 319 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 320 RNILFICGGAFPGLEDIIKERLNKQASIGFQADLRDKYDSDPHILEKVTNEDIRKFGMIP 379 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ ++ L K IL + ++ +I QY++L+ + + L+F +D+++A+A+ A Sbjct: 380 EFIGRLPIVFTMQGLTKEMMVRILKEPKNAIIKQYQKLLALDEVQLEFEDDALEAIAERA 439 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E ++ DI + Sbjct: 440 LEKKT-----GARALRAIIEEIMLDIMY 462 >gi|323691694|ref|ZP_08105955.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673] gi|323504238|gb|EGB20039.1| ATP-dependent Clp protease [Clostridium symbiosum WAL-14673] Length = 473 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 7/119 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVG 60 +P I S LD Y+IGQ+ AK+ +++A+ N ++R L +DE + NIL++G Sbjct: 122 APHVIKSRLDEYVIGQEKAKKVISVAVYNHYKRVLLQNGGQDENQEEKIQIEKSNILMIG 181 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 182 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLSAADNDVEKAEH 240 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + VS E VQ++LL L+EGS V GS ++ Sbjct: 240 HGIIFIDEIDKIAKKKNITNRDVSGESVQQELLKLLEGSQVEVPVGSNQKNALTPMTTVD 299 Query: 293 TDHILFIASGAF--------------------------HVSRP-------------ADLL 313 T+HILFI GAF + S P ++ Sbjct: 300 TNHILFICGGAFPDLEDIIRERLTKSTTMGFMGELRDKYESDPDILTKVTTEDLRTFGMI 359 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ V L++L K +L + ++ ++ QY +L++ + + L F +++++ +A+ Sbjct: 360 PEFLGRLPIVVTLQALTKELMVKVLREPKNAILKQYVKLLELDEVKLVFEDEALEWIAEE 419 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E + DI + D +VVI Y+ Sbjct: 420 AIK-----KETGARALRAIIEEFMLDIMYEIPKDSNIGSVVITRAYL 461 >gi|237743261|ref|ZP_04573742.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1] gi|229433040|gb|EEO43252.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 7_1] Length = 424 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDSMGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S ++++E T+ D Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSQNNIKEITITKDT 411 >gi|32035049|ref|ZP_00135115.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208745|ref|YP_001053970.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus pleuropneumoniae L20] gi|190150598|ref|YP_001969123.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250640|ref|ZP_07336837.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252092|ref|ZP_07338261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246196|ref|ZP_07528277.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248302|ref|ZP_07530327.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252912|ref|ZP_07534800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255176|ref|ZP_07536994.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257344|ref|ZP_07539114.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259614|ref|ZP_07541338.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263942|ref|ZP_07545545.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097537|gb|ABN74365.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915729|gb|ACE61981.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649074|gb|EFL79261.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650628|gb|EFL80787.1| ATP-dependent protease ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852805|gb|EFM85029.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855172|gb|EFM87350.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859550|gb|EFM91575.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862049|gb|EFM94025.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864194|gb|EFM96107.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866259|gb|EFM98123.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870704|gb|EFN02445.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 419 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 66 TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT++++ A+ Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412 A +++ + GAR L++++E +L D ++ L+ EK V Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400 >gi|307250530|ref|ZP_07532474.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857423|gb|EFM89535.1| ATP-dependent Clp protease ATP-binding subunit clpX [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 419 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 66 TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 119 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 120 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 183 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 T ILFI GAF P DL Sbjct: 243 YTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT+D++ A+ Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKDALIAI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412 A +++ + GAR L++++E +L D ++ L+ EK V Sbjct: 363 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 400 >gi|153813203|ref|ZP_01965871.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174] gi|149830734|gb|EDM85825.1| hypothetical protein RUMOBE_03619 [Ruminococcus obeum ATCC 29174] Length = 476 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R + D DE+ N+L++GPTG G Sbjct: 122 APHKIKATLDEYVIGQEYAKKVMSVAVYNHYKR--VATDTMDEIAIEKSNMLMIGPTGCG 179 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 180 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEH 233 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EG+ V G ++N Sbjct: 233 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGADVEVPIGANSKNAMVPLTTVN 292 Query: 293 TDHILFIASGAF-------------------------------HV--------SRPADLL 313 T +ILFI GAF H+ R ++ Sbjct: 293 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPHILEKVTVEDLRSFGMI 352 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ + L + IL++ + ++ QY++L+ + + L+F E ++ A+A Sbjct: 353 PEFIGRLPIIFTMNGLTEDMMVQILSEPRNAILKQYQKLLALDEVKLEFEEGALHAIAAK 412 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ ++ GAR L+ ++E + DI + D V I EY+ Sbjct: 413 AMEKHT-----GARALRAILEEYMLDIMYEIPKDDNIGQVTITREYIE 455 >gi|292669385|ref|ZP_06602811.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia ATCC 43541] gi|292649020|gb|EFF66992.1| ATP-dependent Clp protease ATP-binding subunit [Selenomonas noxia ATCC 43541] Length = 430 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 189 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 247 Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311 ++T +ILFI GAF H P D Sbjct: 248 IKVDTKNILFIVGGAFVGIEKVISKRLKKGNVSIGFGAEVRGKDIEKEFDTLIHQVTPED 307 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+ PEI GR PV L++L++ ILT+ + + QY++L+ +G+ L FTED+ Sbjct: 308 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDGVELVFTEDA 367 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A+ + GAR L+ ++E V+ D+ F Sbjct: 368 LRAVAKKAIERKT-----GARSLKGIIEEVMLDVMF 398 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRDELMPKNILLVGPTGVG 65 P I LD YII Q AK+ +A+A+ N ++R + E+ N++++GP+G G Sbjct: 76 PHLIKEYLDSYIIKQDRAKKILAVAVYNHYKRMKYGYEKEGEETEIEKSNVIMLGPSGCG 135 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KTA+ L++L PF + + TE G+VG +VE +R+L A Sbjct: 136 KTALLSHLSKLLDVPFTVTDASSLTEAGFVGADVEVAVRNLYYAA 180 >gi|291557794|emb|CBL34911.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium siraeum V10Sc8a] Length = 430 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG S+V + G Sbjct: 176 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 235 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 INT +ILFI GAF H P DL Sbjct: 236 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L L++ IL++ ++ ++ QY + +GI L+ T+D++ A+A Sbjct: 296 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEITDDAMRAIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A + GAR L+TV+E L DI F+A SD V++ E V Sbjct: 356 KKAAERKT-----GARGLRTVVEEALSDIMFNAPSDDTISKVILTGECV 399 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64 P E+ LD+YIIGQ +AK+ + +++ N +++ + AD EL N+LL+GPTGV Sbjct: 63 PTELKKILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT I++ LA + PF + T T+ GYVG +VE ++ L+ A Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 167 >gi|215769357|dbj|BAH01586.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190998|gb|EEC73425.1| hypothetical protein OsI_07697 [Oryza sativa Indica Group] Length = 645 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD+Y+IGQ AK+ +++A+ N ++R + ADL Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ V Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAV 350 Query: 110 A 110 A Sbjct: 351 A 351 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 G+V++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 361 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 420 Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311 +T ILFI GA F A+ Sbjct: 421 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLLESVESG 480 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +L + ++ L Q+K+L + L FT+ Sbjct: 481 DLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDA 540 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A++ N+ GAR L+T++E +L D + D + IDA Sbjct: 541 ALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 586 >gi|293376038|ref|ZP_06622291.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter sanguinis PC909] gi|325844603|ref|ZP_08168246.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter sp. HGF1] gi|292645339|gb|EFF63396.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter sanguinis PC909] gi|325489028|gb|EGC91415.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Turicibacter sp. HGF1] Length = 408 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 2/113 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P+EI L+ Y+IGQ+D K+ +A+A+ N ++R D D E+ NILL+G TG GK Sbjct: 59 PKEIFDLLNEYVIGQEDVKKVLAVAVYNHYKRLTSNQDDSDGVEISKSNILLLGSTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T +++ LA++ PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 119 TLLAQTLAKVLDVPFAIADATSLTEAGYVGEDVENILLRLLQAADFNVEKAQR 171 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 58/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI R I VS EGVQ+ LL ++EGS + ++ I Sbjct: 172 GIIYIDEIDKIARRSDNPSITRDVSGEGVQQALLKILEGSVANVPPQGGRKHPNQEFIQI 231 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILF+A GAF H+ +P DLL Sbjct: 232 DTTNILFMAGGAFAGIEEVVKRRIGKKVIGFGADSKANNLTKKEIYAHI-QPDDLLKFGL 290 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GRFP+ L L D ILT+ ++ L QY+++ K + + L F E +I A+A+ Sbjct: 291 IPEFIGRFPIIGALNPLEVEDLIRILTEPKNALTKQYEKIFKMDNVELVFDEGAITAIAE 350 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L++++E ++ D+ F Sbjct: 351 KAVERKT-----GARGLRSIIESIMTDVMF 375 >gi|225019944|ref|ZP_03709136.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum DSM 5476] gi|224947308|gb|EEG28517.1| hypothetical protein CLOSTMETH_03898 [Clostridium methylpentosum DSM 5476] Length = 425 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 1/107 (0%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 TF P EI LD Y+IGQ AK A+++A+ N ++R EL N+LL+GPTG Sbjct: 73 TF-LKPVEIKKVLDEYVIGQDAAKVALSVAVYNHYKRIFAAQQEGVELQKSNVLLLGPTG 131 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGKT +++ LA++ PF + T TE GYVG +VE ++ L+ A Sbjct: 132 VGKTLLAQTLAKILEVPFAIADATTLTEAGYVGEDVENVLLRLIQAA 178 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 59/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG S+V + G I Sbjct: 188 GIIYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGTVSNVPPQGGRKHPNQDFIQI 247 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF H+ P DL Sbjct: 248 DTKNILFICGGAFEGIEKVINRRMDTSAMGFGAPLKEKKDTTLAQAIKHI-EPHDLVRFG 306 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PEI GR PV L L++ IL + ++ L+ QY+ L + +G L+FT+D++ A+A Sbjct: 307 MIPEIVGRIPVITALDDLDEDSLVKILREPKNALLKQYQYLFELDGTTLEFTDDALRAVA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+ ++E VL D+ F + VVI E V Sbjct: 367 QMAIARKT-----GARGLRGILEGVLNDLMFRLPSEKATRVVITKEAV 409 >gi|38606907|gb|AAR25446.1| Clp protease [Lactobacillus johnsonii] Length = 395 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPAD-LRDELMPKNILLVGPTGVGK 66 P EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GK Sbjct: 38 PMEIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSTGTELQKSNIALIGPTGSGK 97 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 98 TYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 141 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 151 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 210 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 211 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 270 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FT+ ++ A+AD+ Sbjct: 271 PEFIGRIPIIATLDKLSTEDLIRILTEPKNALVKQYKKLLSLDDVDLEFTDGALQAIADM 330 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVRLH 422 A++ +GAR L++++E L D+ + + SD K V I + + H Sbjct: 331 AISRR-----MGARGLRSIVENSLMDVMYRTPSDDNIKEVQITKDVITKH 375 >gi|224418551|ref|ZP_03656557.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter canadensis MIT 98-5491] gi|253826897|ref|ZP_04869782.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] gi|313142079|ref|ZP_07804272.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter canadensis MIT 98-5491] gi|253510303|gb|EES88962.1| ATP-dependent protease ATP-binding subunit [Helicobacter canadensis MIT 98-5491] gi|313131110|gb|EFR48727.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter canadensis MIT 98-5491] Length = 412 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R Q P + E+ NILL+GPTG GKT Sbjct: 62 PKELKAILDDYVIGQEKAKKVFSVAVYNHYKRILQNPKEDETEISKSNILLIGPTGSGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA+ P + T TE GYVG +VE I+ L+ A V ++++ Sbjct: 122 LMAQTLAKALNIPIAICDATSLTEAGYVGEDVENILTRLLQEANGDVTKAQK 173 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+F+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 174 GIIFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 233 Query: 292 NTDHILFIASGAF------------------HVSRPAD-------------------LLP 314 NT ILFI GAF H ++ A L+P Sbjct: 234 NTKDILFICGGAFDGLNEIIERRIGGNVLGFHHTKNAKTESKNLLDEVEPDDLVSFGLIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L + K IL ++ L QY++L + + +IL F ++++A+A++A Sbjct: 294 ELIGRLHMIATLDEITKEAMITILQKPKNALTKQYQKLFELDDVILTFKPEALEAIAELA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME ++ DI + +L+ V+I E V Sbjct: 354 IQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEVIITQESV 393 >gi|42525081|ref|NP_970461.1| ATP-dependent protease ATP-binding subunit [Bdellovibrio bacteriovorus HD100] gi|61211515|sp|Q6MH12|CLPX_BDEBA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|39577292|emb|CAE81115.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bdellovibrio bacteriovorus HD100] Length = 431 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 9/117 (7%) Query: 1 MKLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRDELMP 53 +K TF P +I + LD Y+IGQ AK+ +A+A+ N ++R + AD+ E+ Sbjct: 55 VKGTFKVPKPSDIKTYLDDYVIGQTQAKKTLAVAVHNHYKRVNAMSGGKKSADV--EMQK 112 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ +A++ PF + T TE GYVG +VE ++ +L+ + Sbjct: 113 SNILLIGPTGSGKTLLAQTIAKVLNVPFAMADATTLTEAGYVGEDVENVVLNLLQAS 169 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 G++++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 179 GVIYVDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANLPPKGGRKHPQQEFIQV 238 Query: 292 NTDHILFIASGAF--------------------------HVSRPADLL------------ 313 +T +ILFI GAF V + A+LL Sbjct: 239 DTTNILFIVGGAFVGLDKIIEQRTTNKTMGIAADIRTSEEVEKSANLLSKVEPDDLSKFG 298 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P L L++ IL ++ + QY++L EG+ L FTE ++ A+A Sbjct: 299 LIPEFIGRLPAIAVLAPLDEEALLDILVRPKNAITKQYQKLFSFEGVELKFTEKALRAVA 358 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 +A+ + GAR L+ V+E + D+ + S K VVID Sbjct: 359 QMALKRKT-----GARGLRGVLETAMLDVMYDIPSKNNVKEVVID 398 >gi|165924017|ref|ZP_02219849.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 334] gi|165916540|gb|EDR35144.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 334] Length = 422 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EI +LD Y+IGQ+ AK+ +++A+ N ++R Q D E+ NILL+GPTG G Sbjct: 62 TPPEIHRKLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LA++ PF + T TE GYVG +VE II+ L+ Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + + VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFI GAF + P DL+ Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L+ L++ ILT+ ++ L+ QY++L + EG+ +DF ED++ A+ Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416 A A+ + GAR L++++E L D+ + + + VVID+ Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397 >gi|291542674|emb|CBL15784.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus bromii L2-63] Length = 446 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 1/104 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P+EI + LD Y+IGQ AK +++A+ N ++R D + N+LL+GPTGVGK Sbjct: 75 LKPKEIKTILDEYVIGQDHAKVTLSVAVYNHYKRA-FSNDESVDFAKSNVLLLGPTGVGK 133 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 134 TLLAQTLAKALDVPFAIADATTLTEAGYVGEDVENILLKLIQAA 177 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 57/213 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGS 290 +GI+++DE DKI + I VS EGVQ+ LL +VEG+ +Y Sbjct: 186 HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIVEGTVSNVPPQGGRKHPQQEYLQ 245 Query: 291 INTDHILFIASGAF---------------------------------------HVSRPAD 311 I+T +ILFI GAF H Sbjct: 246 IDTKNILFICGGAFDGLEKIVEKRKGSSVIGFESLVQSKQELDSTDWMKEVTAHDLVKYG 305 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR PV L L+ ILT +++++ QYK+L + +G+ L F E+++ A+A Sbjct: 306 IIPELIGRLPVITALSGLDTDALVKILTVPKNSIVQQYKKLFELDGVELLFEEEALRAIA 365 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 A + ++ GAR L+ +ME +L D+ F A Sbjct: 366 QQAQDQHT-----GARGLRGIMEDILTDLMFEA 393 >gi|288870678|ref|ZP_06114933.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] gi|288866331|gb|EFC98629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium hathewayi DSM 13479] Length = 498 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + + N VS E VQ++LL L+EGS+V GS ++T Sbjct: 264 GIIFIDEIDKIAKKKNTNSRDVSGESVQQELLKLLEGSNVEVPVGSNQKNALTPMTTVST 323 Query: 294 DHILFIASGAF-------------------------HVSRPADLL--------------P 314 D+ILFI GAF + D+L P Sbjct: 324 DNILFICGGAFPDLEDIIKERLTNKSSIGFAAELKDKYDKDPDILGRVTNEDLRKFGMIP 383 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ V L+SL K IL + + ++ QY++L++ + + L F +D+++ +A+ A Sbjct: 384 EFLGRLPITVTLQSLTKELLVRILKEPRNAILKQYEKLLELDEVKLVFEDDALEWIAEQA 443 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + + GAR L++++E + DI + D + +VVI Y+ Sbjct: 444 MK-----KETGARALRSIIEDFMLDIMYEIPKDPEIGSVVITRAYL 484 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 5/117 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-PADLRDE----LMPKNILLVGPT 62 +P I LD Y+IGQ+ AK+ +++A+ N ++R L +D ++E + NIL++GPT Sbjct: 147 APHIIKQRLDEYVIGQEQAKKVISVAVYNHYKRVFLVDSDKKEEENVQIEKSNILMIGPT 206 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT + + LA+L P + T TE GY+G ++E ++ L+ A N V ++R Sbjct: 207 GSGKTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVDRAQR 263 >gi|33519712|ref|NP_878544.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Blochmannia floridanus] gi|46576472|sp|Q7VRH0|CLPX_BLOFL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33504057|emb|CAD83318.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Blochmannia floridanus] Length = 426 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ ++ + Sbjct: 189 GIIYIDEIDKIAKKSENISITRDVSGEGVQQALLKLIEGTVAFIPPKGGRKHPQQEFIQV 248 Query: 292 NTDHILFIASGAF-------------------HVS-----------------RPADLL-- 313 +T +ILFI G+F H S P DL+ Sbjct: 249 DTTNILFICGGSFSGLNKIVEERISDNHAIGFHASLKDNNRENLKYSLLNKVEPEDLIKF 308 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GRFPV L L +S+ IL + ++ LI QY++L T+ + L+F E ++ A+ Sbjct: 309 GLIPEFVGRFPVISILNELKESELVAILKEPKNALIKQYQKLFYTDKVKLEFAESALSAI 368 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYV 419 A A+ S+ GAR L+T++E +L D+ + + + T VVI+++ V Sbjct: 369 AKCAMATKSS----GARGLRTILENILLDMMYDLPNQNKVTKVVINSDVV 414 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 13/111 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------QQLPADLRDELMPKNI 56 +P +I L Y++GQ+ K+ +A+A+ N ++R L D+ EL NI Sbjct: 68 TPHDINQYLSTYVVGQEYVKKTLAVAVYNHYKRLRYQVMNINNNSNLYQDV--ELSKSNI 125 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT +++ LAR PF + T TE GYVG +VE +I+ L+ Sbjct: 126 LLIGPTGSGKTLLAQTLARFLDIPFSISDATTLTEAGYVGEDVENVIQKLL 176 >gi|319778292|ref|YP_004129205.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella equigenitalis MCE9] gi|317108316|gb|ADU91062.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Taylorella equigenitalis MCE9] Length = 409 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 2/102 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI LD+Y+IGQ+ K+ +++A+ N ++R + + + EL NILL+GPTG G Sbjct: 64 TPSEIKEFLDKYVIGQEGPKKQLSVAVYNHYKRIRHAGEKSNDVELSKSNILLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ +A+ PF + T TE GYVG +VE II+ L+ Sbjct: 124 KTLLAQTIAKQLDVPFAMADATTLTEAGYVGEDVEHIIQKLL 165 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 62/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 I+++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 178 AIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPGQEFIQV 237 Query: 292 NTDHILFIASGAFH--------------------VSR--------------PAD-----L 312 +T +ILFI GAF VS P D L Sbjct: 238 DTTNILFIVGGAFEGLEKIIQNRTEKSGIGFNASVSHKTEKGVGELIAQVEPEDIIKFGL 297 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L+ ILT ++ L+ QY+ L EG+ L+ T +++ +A+ Sbjct: 298 IPELVGRLPVVTTLQELDVGALVQILTVPKNALVKQYQTLFAMEGVELEVTPEALKLIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A+ + GAR L++++E VL I F S SD+ K V+++ E V Sbjct: 358 KAIKRKT-----GARGLRSIIESVLMPIMFEMPSRSDI--KKVILNEEAV 400 >gi|161830841|ref|YP_001596949.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii RSA 331] gi|189044132|sp|A9NDF9|CLPX_COXBR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|161762708|gb|ABX78350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii RSA 331] Length = 422 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + + VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFI GAF + P DL+ Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L+ L++ ILT+ ++ L+ QY++L + EG+ +DF ED+++A+ Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALNAI 354 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416 A A+ + GAR L++++E L D+ + + + VVID+ Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +++A+ N ++R Q D E+ NILL+GPTG G Sbjct: 62 TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LA++ PF + T TE GYVG +VE II+ L+ Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162 >gi|78186393|ref|YP_374436.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium luteolum DSM 273] gi|123730111|sp|Q3B5I8|CLPX_PELLD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78166295|gb|ABB23393.1| ClpX, ATPase regulatory subunit [Chlorobium luteolum DSM 273] Length = 441 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 75/117 (64%), Gaps = 7/117 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELM--PKNILLVGPT 62 SP+ I+ L++Y++GQ+ AKR++A+A+ N ++R Q+ D DE++ NI+L+GPT Sbjct: 84 SPKAILESLNQYVVGQERAKRSLAVAVYNHYKRIDSQEWRHD-DDEIVIEKSNIMLIGPT 142 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 G GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ + N+ R R Sbjct: 143 GTGKTLLAQTLANLLEVPFSIVDATSLTEAGYVGDDVETILARLLHASDFNLERAER 199 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 61/212 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V K G Sbjct: 200 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPKGGRKHPEQQLI 257 Query: 290 SINTDHILFIASGAF-----------------------------------HVSR----PA 310 +INT +ILFI GAF HV++ Sbjct: 258 NINTKNILFICGGAFEGLDRLIARRISKSSMGFGSSVTDKQSGYDPEILKHVTQDDLHEY 317 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+ R IL + ++ L+ QY +L + +G+ L+FT ++++ + Sbjct: 318 GLIPEFIGRLPVLSTLDPLDADALRSILVEPKNALVKQYGKLFEMDGVELEFTPEALERV 377 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L++V+E V+ DI F Sbjct: 378 VAIAIERGT-----GARALRSVLENVMIDIMF 404 >gi|294783779|ref|ZP_06749103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 1_1_41FAA] gi|294480657|gb|EFG28434.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 1_1_41FAA] Length = 430 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 73 LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 178 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 188 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 247 Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312 +T +ILFI GAF SR P DL Sbjct: 248 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMAGAEGEFFKKVLPEDLVKQG 307 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L +L++ ILT ++ ++ QY++L + EG L+FTE+++ +A Sbjct: 308 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 367 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S + ++E T+ DA Sbjct: 368 RRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDA 410 >gi|297583714|ref|YP_003699494.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus selenitireducens MLS10] gi|297142171|gb|ADH98928.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus selenitireducens MLS10] Length = 423 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 5/114 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGVG 65 P+EI L+ Y+IGQ AK+ +++A+ N ++R + A +R+ EL NI L+GPTG G Sbjct: 64 PQEIREILNDYVIGQDRAKKTLSVAVYNHYKR--VNATVRNDDVELAKSNICLIGPTGSG 121 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEVDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313 +T ++LFI GAF ++S+ P DLL Sbjct: 236 DTTNVLFIVGGAFDGIDSIIKQRLGKKVIGFGAEADQEDLKEGEYLSKILPEDLLRYGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QY++L++ + + L+FTE ++ +A Sbjct: 296 PEFIGRIPVIASLEQLDEAALVEILTAPKNALVKQYQKLLELDEVELEFTEKALKEVATK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ + Sbjct: 356 AIERKT-----GARGLRSIIEGLMLDVMY 379 >gi|255658852|ref|ZP_05404261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella multacida DSM 20544] gi|260849255|gb|EEX69262.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Mitsuokella multacida DSM 20544] Length = 433 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 66/238 (27%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290 IQ E +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EG+ V T G Sbjct: 188 IQKAE-HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGNVVEFTARGQRK 245 Query: 291 --------INTDHILFIASGAF-------------------------------------H 305 ++T +ILFI GAF H Sbjct: 246 HPEAPTIKVDTKNILFIVGGAFVGIDDVIAKRLQKADSSIGFGAEVTSKSEKPTFDELIH 305 Query: 306 VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 RP DL+ PEI GR P+ L++L++ ILT+ ++ + QY++L+ + + L Sbjct: 306 QVRPEDLMQYGIIPEIIGRLPIICTLETLDEDALLRILTEPKNAPVKQYEKLLAMDNVKL 365 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 +F ED++ A+A A+ + GAR L+ ++E V+ D+ + SD K ++ A Sbjct: 366 EFAEDALRAVAKKAIERKT-----GARSLKGIIEDVMLDVMYDIPKSDEPRKVIITKA 418 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P I LD YII Q AK+ +++A+ N ++R + D E+ N++++GP+G GK Sbjct: 81 PHIIKQYLDEYIINQDRAKKILSVAVYNHYKRMKYGYTNDDGTEIEKSNVIMLGPSGCGK 140 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TA+ L++L PF + + TE G+VG +VE +R+L A Sbjct: 141 TALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 184 >gi|8978260|dbj|BAA98151.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana] Length = 608 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49 +P+EI LD ++IGQ+ AK+ +++A+ N ++R + D+ D Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR+ PF + T T+ GYVG +VE I+ L Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 318 Query: 110 AINIVRESRR 119 A V E++R Sbjct: 319 AGCNVEEAQR 328 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 72/242 (29%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------- 289 GIV++DE DK+ + S G VS EGVQ+ LL L+EG+ VS Sbjct: 329 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVSVPIPEKGLRRDPRGDSI 388 Query: 290 SINTDHILFIASGAF-----------------------------HVSRPA---------- 310 ++T ILFI GAF +S A Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448 Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 L+PE GR P+ V L +LN+ +LT+ +S L QYK+L + + L FT Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAE 417 E + +A A++ N+ GAR L++++E +L + F D + E K V++D E Sbjct: 509 EGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEE 563 Query: 418 YV 419 V Sbjct: 564 AV 565 >gi|237742957|ref|ZP_04573438.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 4_1_13] gi|229430605|gb|EEO40817.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 4_1_13] Length = 423 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312 +T +ILFI GAF V + P DL Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P+ L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+ ++E + DI F Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394 >gi|27904899|ref|NP_778025.1| ATP-dependent protease ATP-binding subunit ClpX [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076631|sp|Q89AA0|CLPX_BUCBP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|27904297|gb|AAO27130.1| putative ATP-dependent protease [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 428 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +P EI LD YIIGQ K+ +++A+ N ++R ++ EL N+LL+GPTG Sbjct: 67 TPYEIFKHLDNYIIGQLHTKKVLSVAVYNHYKRLNHLNSKKNNNIELGKSNLLLIGPTGC 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT ++ LA+ PF + T TE GYVG +VE II+ L+ Sbjct: 127 GKTLLAETLAKFLDVPFSISDATTLTEAGYVGEDVENIIQRLL 169 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTLASVPMQGGRKHPQQEFLKV 241 Query: 292 NTDHILFIASGAF---------------------HVSR---------------PADLL-- 313 +T ILFI GAF V++ P DL+ Sbjct: 242 DTSKILFICGGAFLGLNKIIEKRTKLGTKIGFNAKVNKNLKICSKDALMQQVIPEDLIKF 301 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L+K IL++ ++ LI QY+ L K E + L I+ + Sbjct: 302 GLIPEFIGRLPILTILHELDKKMLVKILSEPKNALIKQYQTLFKLEDVELKICTKVIEYI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+N N+ GAR L++++E +L D + + KT++ID Sbjct: 362 AQKAMNQNT-----GARGLRSIIEMLLLDTMYRLPSMTNIKTIIID 402 >gi|332703912|ref|ZP_08424000.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio africanus str. Walvis Bay] gi|332554061|gb|EGJ51105.1| ATP-dependent Clp protease ATP-binding subunit clpX [Desulfovibrio africanus str. Walvis Bay] Length = 415 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTG 63 +P+EI +LD ++IGQ+ AK+ +++A+ N ++R AD E + NILL+GPTG Sbjct: 61 LTPQEIKDQLDEHVIGQEQAKKVLSVAVHNHYKRVYY-ADTAGEDVEIDKSNILLLGPTG 119 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 CGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 166 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 176 GIVYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTDANIPPKGGRKHPQQEFIRL 235 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 NT +ILFI GAF + P DL Sbjct: 236 NTSNILFIMGGAFIGLDKIIQQRMRGGAMGFGAKVEGKRELSISELLRFAHPNDLVKFGM 295 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L + D +LT+ ++ L+ QY++L + + + L FT +++ +A Sbjct: 296 IPEFVGRVPVVTSLIDLGEDDLVRVLTEPKNALVKQYQKLFELDKVRLRFTANALRGIAQ 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ L T GAR L+ VME ++ +I F Sbjct: 356 QAI-LRKT----GARGLRNVMESIMLEIMF 380 >gi|261494049|ref|ZP_05990552.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496190|ref|ZP_05992596.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308142|gb|EEY09439.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310215|gb|EEY11415.1| S14 family endopeptidase ClpX [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 415 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 9/107 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R L + L + EL NILL+G Sbjct: 66 TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRSALSNHQTTNGVELGKSNILLIG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 124 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ +++ + G + Sbjct: 183 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGGRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFAAALKKDKDRQDLTELFKQVEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT+D++ ++ Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHFTKDALISI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A A++ + GAR L++++E +L D + L K V I Sbjct: 363 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTI 401 >gi|197301584|ref|ZP_03166657.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC 29176] gi|197299314|gb|EDY33841.1| hypothetical protein RUMLAC_00310 [Ruminococcus lactaris ATCC 29176] Length = 490 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 9/151 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD Y++GQ+ AK+ +A+A+ N ++R E+ N+L++GPTG GKT Sbjct: 138 APHKIKARLDEYVVGQERAKKTMAVAVYNHYKRVATNTMDDIEIEKSNMLMIGPTGSGKT 197 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G ++E ++ L+ A N V E EQ Sbjct: 198 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDV------ERAEQGI 251 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TS+ R+V + ++ G Sbjct: 252 IFIDE--IDK-IAKKKTSSQRDVSGESVQQG 279 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 250 GIIFIDEIDKIAKKKTSSQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 309 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 +ILFI GAF V+ R ++P Sbjct: 310 KNILFICGGAFPDIEEIIKERLQKKTSMGFNSELKDTYEHDENLLSKVTVEDLRKFGMIP 369 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ LK L+K IL + ++ ++ QY++L+ + + LDF + +++A+A+ A Sbjct: 370 EFLGRLPIIFTLKGLDKEMLVKILREPKNAILKQYQKLLALDEVKLDFDDSALEAIAEKA 429 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + D GAR L+ ++E + DI + Sbjct: 430 ME-----KDTGARALRAIIEEFMLDIMY 452 >gi|283457918|ref|YP_003362520.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa DY-18] gi|283133935|dbj|BAI64700.1| ATP-dependent protease Clp, ATPase subunit [Rothia mucilaginosa DY-18] Length = 455 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPK 54 +PREI S L+ Y+IGQ AKR +A+A+ N ++R A + EL Sbjct: 71 TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NIL++GPTG GKT ++ LA+ PF V+ T TE GYVG +VE I+ L++ A + Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190 Query: 115 RESRR 119 +++R Sbjct: 191 AKAQR 195 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 59/220 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR G + ++R EGVQ+ LL ++EG+ +V + G Sbjct: 196 GIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTVATVPPEGGRKHPAHANI 254 Query: 290 SINTDHILFIASGAF------------------------HVSRPAD-----------LLP 314 I+T +ILFI +GAF V P D ++P Sbjct: 255 EIDTSNILFIVAGAFDNIDDRIAARVGAGGIGFGAELGGSVKNPLDQIMPEDLAHYGIIP 314 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L LN+ + +LT+ ++ L+ QY+ L +G+ E ID A A Sbjct: 315 ELIGRLPVISTLNELNEEELARVLTEPKNALLKQYRHLFALDGV-----ELIIDDAAIAA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + + GAR L+++ME++L+ I F D+ ++T V+ Sbjct: 370 IARLAAERGTGARGLRSMMEQILQPIMF---DIPDRTDVV 406 >gi|301118793|ref|XP_002907124.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4] gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4] Length = 692 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 61/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EGS +V K G +I Sbjct: 434 GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITI 493 Query: 292 NTDHILFIASGAF-----HVSR--------------------------------PADL-- 312 +T +ILFI GAF V+R P DL Sbjct: 494 DTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQAEPEDLVS 553 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFP+ V L+K + +LT+ +++L+ QYK L + TE +++A Sbjct: 554 YGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEA 613 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 +A+ A+ N+ GAR L+++ ER L + F D+ + + V +D E + H Sbjct: 614 VAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGH 662 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N++LVGPTG GKT +++ LARLA P + + T T+ GYVG +VE ++ L Sbjct: 364 ELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQA 423 Query: 110 A 110 A Sbjct: 424 A 424 >gi|294784270|ref|ZP_06749565.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_27] gi|294488136|gb|EFG35487.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_27] Length = 423 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312 +T +ILFI GAF V + P DL Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P+ L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPIISTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+ ++E + DI F Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394 >gi|240143620|ref|ZP_04742221.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] gi|257204367|gb|EEV02652.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Roseburia intestinalis L1-82] Length = 514 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + +D +D E+ N+L++GPTG G Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V + Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EG+ V G+ +N Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332 Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313 T +ILFI GAF +++ A ++ Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ ++ QY++L+ + + L+F +D++ A+A Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L+ ++E + DI + D V I EYV Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495 >gi|223042117|ref|ZP_03612289.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus minor 202] gi|223017094|gb|EEF15534.1| ATP-dependent Clp protease ATP-binding subunit [Actinobacillus minor 202] Length = 414 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 182 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGSRKHPKGETIPV 241 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 242 DTSKILFICGGAFAGLDKIVEARTNKQGGIGFAAELKNDKERQDLTELFKQVEPEDLVRF 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L+++ ILT+ ++ +I QY+ L + EG+ L+FT+D++ A+ Sbjct: 302 GLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVELEFTQDALVAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A A+ V GAR L++++E +L D + L K V I+ V Sbjct: 362 AKKAI-----VRKTGARGLRSIVEGLLLDTMYDLPTLNAKKVTIEKACV 405 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 9/107 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R L + L + EL NILL+G Sbjct: 65 TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKR--LKSALSNHEVTNGVELGKSNILLIG 122 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 123 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169 >gi|171910144|ref|ZP_02925614.1| ATP-dependent protease ATP-binding subunit [Verrucomicrobium spinosum DSM 4136] Length = 423 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 12/114 (10%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD---------ELMPKNI 56 P +I++ LD ++IGQ AK+ +++A+ N ++R Q AD + E+ N+ Sbjct: 62 PADIMAALDHHVIGQAHAKKVLSVAVHNHYKRILSAQASADRKTAAIGEYNDVEIEKSNV 121 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGPTG GKT +++ LAR+ PF + T TE GYVG +VE II L+ A Sbjct: 122 LLVGPTGCGKTLLAKTLARILNVPFSIADATTLTEAGYVGEDVENIILRLLQAA 175 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 185 GIIYVDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTVCNVPPQGGRKHPQQEYIQV 244 Query: 292 NTDHILFIASGAF---------------------HVSR------------PADLL----- 313 NT++ILFI GAF ++R P DLL Sbjct: 245 NTENILFICGGAFVGLDQFMAKRRGRKVMGFGNEMLNREQQDADLTKDVQPEDLLGFGLI 304 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV V ++ L + + +LT+ ++ LI QY +L+ +G+ L D++ A+A Sbjct: 305 PEFIGRLPVVVAMQQLTEEELVRVLTEPKNALIKQYSKLLGMDGVDLQVNRDALIAMARE 364 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++ER++ D+ + Sbjct: 365 ALKRGT-----GARGLRSILERIMLDVMY 388 >gi|254361749|ref|ZP_04977884.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213] gi|153093284|gb|EDN74280.1| S14 family endopeptidase ClpX [Mannheimia haemolytica PHL213] Length = 415 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 9/107 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + LD Y+IGQ+ AK+ +++A+ N ++R L + L + EL NILL+G Sbjct: 66 TPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKR--LRSALSNHQATNGVELGKSNILLIG 123 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 124 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 170 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 59/224 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ +++ + G + Sbjct: 183 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGGRKHPKGETIPV 242 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 243 DTSKILFICGGAFAGLDKIVEARTNTQGGIGFAAALKKDKDRQDLTELFKQVEPEDLVKF 302 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT+D++ ++ Sbjct: 303 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFEMEGVELHFTKDALISI 362 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A A++ + GAR L++++E +L D + L K V I Sbjct: 363 AQKAISRKT-----GARGLRSIVENLLLDTMYDLPTLNAKKVTI 401 >gi|291539195|emb|CBL12306.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis XB6B4] Length = 514 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + +D +D E+ N+L++GPTG G Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V + Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EG+ V G+ +N Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332 Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313 T +ILFI GAF +++ A ++ Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ ++ QY++L+ + + L+F +D++ A+A Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L+ ++E + DI + D V I EYV Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495 >gi|225621124|ref|YP_002722382.1| ATP-dependent protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] gi|225215944|gb|ACN84678.1| ATP-dependent protease ATP-binding subunit [Brachyspira hyodysenteriae WA1] Length = 410 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGV 64 P++I S LD Y++GQ AK+ +++++ N ++R Q D D E+ N+LL+GPTG Sbjct: 64 LPPKQIKSLLDEYVVGQDYAKKVLSVSVYNHYKRITQNAEDKNDVEIEKSNVLLIGPTGS 123 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 GKTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 169 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 60/241 (24%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-YGS---- 290 I++ E GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +G Sbjct: 173 IKLAEK-GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIVEGTVATVPPHGGRKHP 231 Query: 291 ------INTDHILFIASGAF---------HVSRPA------------------------- 310 I+T +ILFI GAF S+ Sbjct: 232 HQDNLHIDTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMDNLNYDEIMKNIATE 291 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE+ GR PV L+ L + + IL + ++ L QY++L + I L +D Sbjct: 292 DLVKYGLIPELIGRLPVIATLEELKEEELLKILKEPKNALTKQYQKLFSYDNIELKIDDD 351 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVV-IDAEYVRLHI 423 ++ ++ + ++ GAR L+ + ERV+ D + ++ +EK V +D +YV + Sbjct: 352 ALKSIVKKTMEEHT-----GARGLRALFERVMLDAMYDMPNESKEKQVFELDKKYVNEKL 406 Query: 424 G 424 G Sbjct: 407 G 407 >gi|21673243|ref|NP_661308.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS] gi|46576607|sp|Q8KFC3|CLPX_CHLTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21646329|gb|AAM71650.1| ATP-dependent Clp protease, ATP-binding subunit Clpx [Chlorobium tepidum TLS] Length = 439 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 66/232 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EGS V K G Sbjct: 198 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGSVVGVPPKGGRKHPEQQLI 255 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 +INT +ILFI GAF VS+ + Sbjct: 256 NINTKNILFICGGAFEGLDKIIARRVSKSSMGFGSKVRGKQTGYDPEILKLVTQDDLHDY 315 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L+ L+ R IL + ++ L+ QYK L + +G+ L+FT+++++ + Sbjct: 316 GLIPEFIGRLPVMSVLEPLDAVALRNILVEPKNALVKQYKRLFEMDGVELEFTDEALERV 375 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 +A+ + GAR L++V+E V+ DI F + D+Q+ VI AE + Sbjct: 376 VAIAIERGT-----GARALRSVLENVMIDIMFELPTRKDVQK--CVITAETI 420 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 4/115 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELM--PKNILLVGPTGV 64 SP I LD+Y+IGQ+ AK+++A+A+ N ++R DE++ NILL+GPTG Sbjct: 83 SPVNIKEALDQYVIGQEQAKKSLAVAVYNHYKRLDAHDWSSGDEVVIEKSNILLIGPTGT 142 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA L PF + T TE GYVG +VE I+ L+ + N+ R R Sbjct: 143 GKTLLAQTLANLLEVPFTIADATSLTEAGYVGDDVETILARLLHASDFNLERAER 197 >gi|46190461|ref|ZP_00121496.2| COG1219: ATP-dependent protease Clp, ATPase subunit [Bifidobacterium longum DJO10A] gi|189439547|ref|YP_001954628.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium longum DJO10A] gi|189427982|gb|ACD98130.1| ATP-dependent Clp protease ATPase subunit [Bifidobacterium longum DJO10A] Length = 459 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 PA R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVA 110 E GYVG +VE +++ L+ A Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%) Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200 ++A + TR R SD D+EVA SN + G VG L++ ++VM Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171 Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248 P ++ D + D++TV + +Q + +GI++ Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217 Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293 +DE DKI AR SG ++R EGVQ+ LL ++EG+ S ++T Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276 Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315 ILFI GAF H + D LLPE Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV LK L D ILT + LI QY++L +G+ L FTE +I A+AD+A+ Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + GAR L++++ER L+D F L + K V++D V Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436 >gi|291537251|emb|CBL10363.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Roseburia intestinalis M50/1] Length = 517 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + +D +D E+ N+L++GPTG G Sbjct: 162 APHKIKASLDEYVVGQEHAKKVMSVAVYNHYKR--IASDEKDGIEIEKSNMLMIGPTGSG 219 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V + Sbjct: 220 KTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 273 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------IN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EG+ V G+ +N Sbjct: 273 HGIIFIDEIDKIAKKRNTNQRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTMVN 332 Query: 293 TDHILFIASGAF---------HVSRPAD------------------------------LL 313 T +ILFI GAF +++ A ++ Sbjct: 333 TKNILFICGGAFPELEDIIKERLNKSASIGFKSELKDKYDQDENILQKVTIEDVRKFGMI 392 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ ++ QY++L+ + + L+F +D++ A+A Sbjct: 393 PEFLGRLPIMFTLEALTEDMLVRILKEPKNAILKQYQKLLAMDEVRLEFEDDALMAIAKQ 452 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L+ ++E + DI + D V I EYV Sbjct: 453 AKE-----KKVGARALRAIIEDFMLDIMYEIPKDDNIGMVTITKEYVE 495 >gi|213692574|ref|YP_002323160.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524035|gb|ACJ52782.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458726|dbj|BAJ69347.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 459 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGEQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 PA R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVA 110 E GYVG +VE +++ L+ A Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%) Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200 ++A + TR R SD D+EVA SN + G VG L++ ++VM Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171 Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248 P ++ D + D++TV + +Q + +GI++ Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217 Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293 +DE DKI AR SG ++R EGVQ+ LL ++EG+ S ++T Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276 Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315 ILFI GAF H + D LLPE Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV LK L D ILT + LI QY++L +G+ L FTE +I A+AD+A+ Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + GAR L++++ER L+D F L + K V++D V Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436 >gi|313895439|ref|ZP_07828996.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sp. oral taxon 137 str. F0430] gi|320530805|ref|ZP_08031845.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas artemidis F0399] gi|312976334|gb|EFR41792.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sp. oral taxon 137 str. F0430] gi|320136964|gb|EFW28906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas artemidis F0399] Length = 433 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 63/216 (29%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 192 HGIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRKHPEAPT 250 Query: 291 --INTDHILFIASGAF-------------------------------------HVSRPAD 311 ++T +ILFI GAF H P D Sbjct: 251 IKVDTKNILFIVGGAFVGIEKIIAKRLRKNSAAIGFGAEVRGKETEKEFDTLIHQVSPED 310 Query: 312 LL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+ PEI GR PV L++L++ ILT+ + + QY++L+ +G+ L FTED+ Sbjct: 311 LMEYGIIPEIIGRLPVICTLETLDEDALLRILTEPINAPVRQYEKLLAMDGVELVFTEDA 370 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A+ + GAR L+ ++E V+ D+ F Sbjct: 371 LRAVAKKAIARKT-----GARSLKGIIEEVMLDVMF 401 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL------RDELMPKNILLVGPT 62 P I LD YII Q AK+ +A+A+ N ++R + + E+ N++++GP+ Sbjct: 76 PHLIKDYLDTYIINQDHAKKILAVAVYNHYKRMKYGYEAAKEEQESTEIEKSNVIMLGPS 135 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKTA+ L++L PF + + TE G+VG +VE +R+L A Sbjct: 136 GCGKTALLSHLSKLLDVPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 183 >gi|256846929|ref|ZP_05552383.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_36A2] gi|256717727|gb|EEU31286.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium sp. 3_1_36A2] Length = 423 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDEDGVELQKSNVLLIGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADL---- 312 +T +ILFI GAF V + P DL Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQENAGAEGEFFKKVLPEDLVRQG 308 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR P+ L +L++ + ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPIISTLDNLDEQNLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+ ++E + DI F Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMF 394 >gi|223038749|ref|ZP_03609042.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter rectus RM3267] gi|222880151|gb|EEF15239.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter rectus RM3267] Length = 393 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 6/109 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGP 61 N +P+E+ + LD Y+IGQ AK+ ++ + N ++R + P D E+ NILLVGP Sbjct: 42 NLTPKELKAVLDNYVIGQDKAKKVFSVGVYNHYKRIFRKGETPDDT--EISKSNILLVGP 99 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 100 TGSGKTLMAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAA 148 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 158 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQI 217 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILF+ GAF R D L+P Sbjct: 218 DTSNILFVCGGAFDGLADIIERRIGKNVLGFGQDKRSKDDRENLLDALESDDLVHFGLIP 277 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + + D ILT+ ++ ++ QY++L + L F ++++ +A +A Sbjct: 278 ELIGRLHVVATLNKITQDDMVRILTEPKNAILKQYQKLFAIDRANLKFDDEALKEVARLA 337 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME ++ D+ + +L VVI E V Sbjct: 338 IERKT-----GARGLRSIMEEIMTDVMYELPELAGYDVVITKEVV 377 >gi|165976698|ref|YP_001652291.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876799|gb|ABY69847.1| ATP-dependent Clp protease, ATP-binding subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 378 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P EI + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 25 TPHEINAHLDEYVIGQEHAKKVLSVAVYNHYKR------LRNALSGHKETNGVELGKSNI 78 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 79 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 129 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 142 GIVFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIPV 201 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 202 DTSKILFICGGAFAGLDKIVEARSNKQGGIGFGAELKKDKEREDLTELFKQVEPEDLVKF 261 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L++ ILT+ ++ +I QY+ L + EG+ L FT++++ A+ Sbjct: 262 GLIPELIGRLPVVTPLQELDEEALIQILTEPKNAIIKQYQALFQMEGVELKFTKEALIAI 321 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ-EKTV 412 A +++ + GAR L++++E +L D ++ L+ EK V Sbjct: 322 AQKSISRKT-----GARGLRSIVENLLLDTMYNLPTLKAEKNV 359 >gi|319651747|ref|ZP_08005873.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp. 2_A_57_CT2] gi|317396566|gb|EFV77278.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus sp. 2_A_57_CT2] Length = 421 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+++++A+ N ++R + + + EL NI ++GPTG GKT Sbjct: 64 PAEIRDILDEYVIGQDQAKKSLSVAVYNHYKRINSNSKIDEVELSKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 57/227 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAFH-----VSR-------------------PADLL-------------- 313 +T +ILFI GAF + R P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGSDQNQKEIEPKDLLAKVLPEDLLKFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L+++ ILT ++ L+ QY+++++ + + LDF E +++ +A Sbjct: 296 PEFIGRLPVIASLSQLDEAALIEILTKPKNALVKQYQKMLELDDVELDFEEGALEEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E ++ D+ F ++ K +I E V Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMFDLPSREDIKKCIITKETV 397 >gi|300865841|ref|ZP_07110587.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria sp. PCC 6506] gi|300336165|emb|CBN55745.1| ATP-dependent Clp protease ATP-binding subunit clpX [Oscillatoria sp. PCC 6506] Length = 460 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 8/112 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------ELMPKNILL 58 P EI LD ++IGQ AK+ +++A+ N ++R + D EL NILL Sbjct: 88 LKPVEIKQHLDNHVIGQHSAKKVLSVAVYNHYKRLSVDRDKATKPTPDDAVELQKSNILL 147 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ VA Sbjct: 148 VGPTGCGKTLLAQSLAQMLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 199 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 65/218 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ + + Sbjct: 209 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQL 268 Query: 292 NTDHILFIASGAF------------------------------------------HVSRP 309 +T ILFI GAF ++P Sbjct: 269 DTSKILFICGGAFVGLEKIVEQRLGKKSLGFIQPQEAEGIANGIPAKDKRAADILQHAQP 328 Query: 310 ADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DL +PE GR PV + L+++ ILT+ ++ L+ QY++L+K + + L+F Sbjct: 329 DDLVKFGLIPEFVGRMPVVTVISPLDEAALMEILTEPKNALVKQYQKLLKMDNVQLEFQG 388 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 D++ A+A A + GAR L++++E ++ D+ + Sbjct: 389 DALKAIAQEAYRRKT-----GARALRSILEELMLDVMY 421 >gi|237739237|ref|ZP_04569718.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 2_1_31] gi|229422845|gb|EEO37892.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 2_1_31] Length = 430 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 73 LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 132 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ Sbjct: 133 GKTLLAQTLARILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 178 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 188 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 247 Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312 +T +ILFI GAF SR P DL Sbjct: 248 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMAGAEGEFFKKVLPEDLVKQG 307 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L +L++ ILT ++ ++ QY++L + EG L+FTE+++ +A Sbjct: 308 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 367 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S + ++E T+ DA Sbjct: 368 RRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNKIKEITITKDA 410 >gi|258404645|ref|YP_003197387.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfohalobium retbaense DSM 5692] gi|257796872|gb|ACV67809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfohalobium retbaense DSM 5692] Length = 414 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P EI L+ Y++GQ AK+ +A+A+ N ++R D EL NIL VGPTG G Sbjct: 61 LPPAEIKEALNDYVVGQDMAKKVLAVAVHNHYKRVYYAGGSDDVELDKSNILFVGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLMAQTLARILNVPFAIADATNLTEAGYVGEDVENILVQLLQNA 165 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 175 GIIYIDEIDKVARKSDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 234 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF P DLL Sbjct: 235 DTSNILFILGGAFVGLEDIIQQRLQGSSMGFGARLVGKKEMSIGDVLRQVHPEDLLKFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L++ D ILT + L+ QY++L + + + L FT +++ A+A Sbjct: 295 IPEFVGRIPVVATLDELSEDDLVHILTAPRNALVKQYQKLFELDEVHLRFTNNALKAIAT 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A+ + GAR L+ VME ++ D+ + S +D++E V Sbjct: 355 RALAQKT-----GARGLRNVMETIMLDLMYKLPSMTDVKECVV 392 >gi|254415617|ref|ZP_05029376.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus chthonoplastes PCC 7420] gi|196177567|gb|EDX72572.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Microcoleus chthonoplastes PCC 7420] Length = 468 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 8/112 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE--------LMPKNILL 58 P EI LD+Y+IGQ AK+ +++A+ N ++R L + D L NILL Sbjct: 103 LKPVEIKQVLDKYVIGQDQAKKVLSVAVYNHYKRLNLAQEDYDASGLDDSITLQKSNILL 162 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LA L PF + T TE GYVG +VE I+ L+ +A Sbjct: 163 IGPTGCGKTLLAQTLANLLQVPFAIADATTLTEAGYVGDDVENILLRLLQMA 214 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 60/221 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + + + VS EGVQ+ LL ++EG+ V+ ++ + Sbjct: 224 GIVYIDEIDKITRKSEKSSMTRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQEFIQL 283 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFI GAF H+ P DL+ Sbjct: 284 DTSNILFICGGAFVGLEQIIEQRLGKRSIGFIQPSETRSPQLSSAELSKHL-EPDDLIKF 342 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PEI GR PV ++ L++ ILT + L+ QY++L+ + + L+F +++ A+ Sbjct: 343 GVIPEIIGRLPVITAVEPLDEDSLVAILTKPRNALVKQYQKLLNMDNVRLEFHPEALRAI 402 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 A A + GAR L+ ++E V+ ++ + Q+ T Sbjct: 403 AQEAFRRKT-----GARALRGILEEVMLEVMYEIPSRQDIT 438 >gi|254431561|ref|ZP_05045264.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp. PCC 7001] gi|197626014|gb|EDY38573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Cyanobium sp. PCC 7001] Length = 453 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI + LDR ++GQ++AK+++++A+ N ++R D + E L NILL+GP Sbjct: 86 PQEIKAFLDRQVVGQEEAKKSLSVAVYNHYKRLAWQGDGKGETDETATRLHKSNILLIGP 145 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A Sbjct: 146 TGCGKTLLAQTLAEILEVPFAVADATTLTEAGYVGEDVENILLRLLQKA 194 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 62/215 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG++ V + G I Sbjct: 204 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTTANVPPQGGRKHPYQDCIQI 263 Query: 292 NTDHILFIASGAF----------------------HVSRP--------AD---------- 311 +T ILFI GAF +RP AD Sbjct: 264 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFINPEGNNRPRSARERLAADVLRHLEPDDL 323 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ L+ ILT+ L+ Q++ L+ + + L F E Sbjct: 324 VKYGLIPEFIGRLPVTAVLEPLDIHALEAILTEPRDALVKQFQTLLSMDDVQLHF-EQGA 382 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + T GAR L+ ++E ++ ++ + Sbjct: 383 IEAIAAEAHRRKT----GARALRGILEELMLELMY 413 >gi|195112088|ref|XP_002000608.1| GI10327 [Drosophila mojavensis] gi|193917202|gb|EDW16069.1| GI10327 [Drosophila mojavensis] Length = 672 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 387 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 440 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 441 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 500 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN + ILT+ + L+ QYK L Sbjct: 501 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 560 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED+++++A +A+ ++ GAR L+++ME++L D F ++V Sbjct: 561 LGLDEVDLSFTEDAVESIASLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRSV 615 Query: 413 VIDAEYVR 420 I A+YVR Sbjct: 616 HITADYVR 623 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 322 NIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDANYNV 381 Query: 114 VR 115 R Sbjct: 382 ER 383 >gi|167745380|ref|ZP_02417507.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662] gi|167655101|gb|EDR99230.1| hypothetical protein ANACAC_00071 [Anaerostipes caccae DSM 14662] Length = 480 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 12/171 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD Y+IGQ AK+ +++A+ N ++R E+ N+L+VGPTG GKT Sbjct: 135 APHKIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKT 194 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G +VE ++ L+ A N V E+ E Sbjct: 195 YLVKTLARLLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEA------EHGI 248 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 I +E +D + K +N+R+V + ++ G + E+++ V TS + Sbjct: 249 IFIDE--IDK-IAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 296 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+++V +Q +N +GI+F+DE DKI + + N VS E VQ+ LL L+EG+ Sbjct: 225 DVESVLSKLLQAADNDVDEAEHGIIFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 284 Query: 283 SVSTKYG-----------SINTDHILFIASGA-------------------FHVS----- 307 V G +INT +ILFI GA FH Sbjct: 285 EVEVPVGATSKNAMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSIGFHADLKDKF 344 Query: 308 ---------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 R ++PE GR P+ L+ L+K IL + ++ ++ QY++L Sbjct: 345 DKDENILSRVTVDDLREYGMIPEFLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKL 404 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411 ++ + + L F E +++A+A+ A+ + GAR L+ ++E+ + DI F D Sbjct: 405 LELDEVELIFDESALEAIAEKALEKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGR 459 Query: 412 VVIDAEYVRLH 422 V+I+ +Y+ H Sbjct: 460 VIINRDYILNH 470 >gi|255326614|ref|ZP_05367691.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia mucilaginosa ATCC 25296] gi|255296354|gb|EET75694.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rothia mucilaginosa ATCC 25296] Length = 455 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 13/125 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ-------------LPADLRDELMPK 54 +PREI S L+ Y+IGQ AKR +A+A+ N ++R A + EL Sbjct: 71 TPREIYSYLNDYVIGQDAAKRTLAVAVYNHYKRIHDIDNPVLTSRILSATAGEQVELGKS 130 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NIL++GPTG GKT ++ LA+ PF V+ T TE GYVG +VE I+ L++ A + Sbjct: 131 NILMLGPTGCGKTYLAATLAKKLDVPFALVDATTLTEAGYVGDDVENILLRLINAADGDI 190 Query: 115 RESRR 119 +++R Sbjct: 191 AKAQR 195 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 56/212 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 GI+++DE DKI AR G + ++R EGVQ+ LL ++EG+ +V + G Sbjct: 196 GIIYIDEIDKI-ARKGGENLSITRDVSGEGVQQALLKIIEGTVATVPPEGGRKHPAHANI 254 Query: 290 SINTDHILFIASGAF------------------------HVSRPAD-----------LLP 314 I+T +ILFI +GAF V P D ++P Sbjct: 255 EIDTSNILFIVAGAFDNIDDRIAARVGAGGIGFGAELGGSVKNPLDQIMPEDLAHYGIIP 314 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L LN+ + +LT+ ++ L+ QY+ L +G+ L + +I A+A +A Sbjct: 315 ELIGRLPVISTLSELNEKELARVLTEPKNALLKQYRHLFALDGVDLVLDDAAIAAIARLA 374 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 + GAR L+ +ME++L+ I F D Sbjct: 375 AERGT-----GARGLRAMMEQILQPIMFDIPD 401 >gi|301167837|emb|CBW27422.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacteriovorax marinus SJ] Length = 436 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDE--LMPKNILLVGPTG 63 P EI LD Y+IGQ AK+ +++A+ N ++R + +DE L NILL GPTG Sbjct: 66 PHEIKLHLDNYVIGQDRAKKIISVAVHNHYKRISHGSVNKGRKDEVELAKSNILLAGPTG 125 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT I++ LA+ PF + T TE GYVG +VE II +L+ Sbjct: 126 SGKTLIAQSLAKYLNVPFAIADATSLTEAGYVGEDVENIILNLL 169 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ +V K G + Sbjct: 182 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLVEGTVAAVPPKGGRKHPQQEFIQV 241 Query: 292 NTDHILFIASGAF----------HVSRPADL----------------------------L 313 +T +ILFI +GAF RP L + Sbjct: 242 DTKNILFIVAGAFVGLDKIIEKRLTKRPMGLVTKEEKVEQSVVEKLGGIEAEDLSKFGLI 301 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT+ ++ + QY++L + +GI ++F E+++ +A Sbjct: 302 PEFIGRLPVNALLQELDEEALVKILTEPKNAITKQYEKLFEYDGIEVEFEEEALKEVAAT 361 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E+ + D+ + Sbjct: 362 ALRKKT-----GARGLRAILEQTMLDVMY 385 >gi|329766942|ref|ZP_08258470.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella haemolysans M341] gi|328837667|gb|EGF87292.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella haemolysans M341] Length = 402 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 63/104 (60%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P++I+ L+ Y+I Q AK++VA+A+ N ++R + + EL NI L+G TG GK Sbjct: 61 LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIKAAENHDIELQKSNIALIGSTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSA 164 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 174 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPGEEMIKI 233 Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315 NT +ILFI GAF S+ +L +PE Sbjct: 234 NTKNILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELKDDKDIISKVKHEDLVKFGMIPE 293 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV +L+ L++ D +LT+ +++++ QY+ L +G+ L F E++++ +A ++ Sbjct: 294 FIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFDLDGVKLIFEEEALEEIAKESI 353 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L++++E +L D+ F Sbjct: 354 KRKT-----GARGLRSIIEELLLDVMF 375 >gi|302385024|ref|YP_003820846.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] gi|302195652|gb|ADL03223.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridium saccharolyticum WM1] Length = 477 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + S + VS E VQ++LL L+EGS+V GS ++T Sbjct: 245 GIIFIDEIDKIAKKKSTSSRDVSGESVQQELLKLLEGSTVEVPVGSNQKNALTPMTAVST 304 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 ++ILFI GAF HV+ R ++P Sbjct: 305 ENILFICGGAFPDLEDIIKERLKEKSSIGFSAELKDRYEKDPNILSHVTNEDLRKFGMIP 364 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ V L+SL+K +L + ++ ++ QYK L++ + + L F +++++ +A+ A Sbjct: 365 EFLGRLPITVTLESLDKDLLVRVLKEPKNAILKQYKRLLELDEVNLVFEDEALEWIAEEA 424 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + + GAR L+ ++E + DI + D +VVI Y+ Sbjct: 425 LKKKT-----GARALRAIIENFMLDIMYEVPKDPNIGSVVITRAYL 465 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P I +LD Y+IGQ+ AK+ +++A+ N ++R L D R ++ NIL++G Sbjct: 127 APHVIRRKLDDYVIGQEQAKKVISVAVYNHYKRVYL-TDSRKKDEEENVQIEKSNILMIG 185 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ R Sbjct: 186 PTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLTAADNDVDKAER 244 >gi|242310371|ref|ZP_04809526.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter pullorum MIT 98-5489] gi|239522769|gb|EEQ62635.1| ATP-dependent Clp protease ATP-binding subunit clpX 1 [Helicobacter pullorum MIT 98-5489] Length = 413 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R Q P + E+ NILL+GPTG G Sbjct: 61 MPPKELKAILDEYVIGQEKAKKVFSVAVYNHYKRILQNPQEEDTEISKSNILLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ P + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLMAQTLAKSLNIPIAICDATSLTEAGYVGEDVENILTRLLQEA 165 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 175 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 234 Query: 292 NTDHILFIASGAF------------------HVSR--------------PADL-----LP 314 NT ILFI GAF H + P DL +P Sbjct: 235 NTKDILFICGGAFDGLEEIIERRIGGNTLGFHHQKNTKVNSHNLLEKVEPDDLVSFGLIP 294 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L+ + K IL ++ L QYK+L +G++L F ++++A+A++A Sbjct: 295 ELIGRLHMIATLEKITKEAMVNILQKPKNALTKQYKQLFALDGVVLTFQPEALEAIAELA 354 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+++ME ++ DI + +L+ V+I E V Sbjct: 355 IQRKT-----GARGLRSIMEEIMLDIMYELPELKGYEVIITKETV 394 >gi|328951760|ref|YP_004369094.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452084|gb|AEB07913.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] Length = 595 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 6/112 (5%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALR---NRWRRQQLPADLRDE---LMPKN 55 K+ FN P E+ L+ Y++ Q+ AK +A + NR R Q + D + N Sbjct: 58 KINFNLKPEELEDYLNEYVVKQETAKSILATKICTHFNRIRYLQDQGRVPDPGIGSIKNN 117 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 I+L+GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE ++RDLV Sbjct: 118 IILIGPTGVGKTYLVKLIAKKLGVPFVKGDATKFSETGYVGGDVEDLVRDLV 169 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 90/216 (41%), Gaps = 68/216 (31%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYG----------- 289 +GI+++DE DKI A SGN IG VSR GVQR LL +E + V K Sbjct: 180 QFGIIYIDEIDKIAA--SGNLIGPDVSRSGVQRALLKPMEETEVDLKTPHDPISQIQAIE 237 Query: 290 -----------SINTDHILFIASGAFH-----------------VSRP------------ 309 ++NT +ILFI SGAF+ RP Sbjct: 238 HYRRTGKREKRTLNTRNILFIVSGAFNGLEKFIKDRLAKQEIGFHGRPRSKKRDREFWRQ 297 Query: 310 ---ADLLP-----EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 DL+ E GR PV L+ L D IL + + +I+ K + GI + Sbjct: 298 VNAEDLIKYGFESEFVGRLPVIAVLEELTADDLYEILKNPNNPIIISKKRDFRAYGIDIK 357 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 F + ++ LA+ A + GAR L +V+E+ L Sbjct: 358 FEDRALHLLAEKAAQERT-----GARGLVSVIEKSL 388 >gi|295110618|emb|CBL24571.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Ruminococcus obeum A2-162] Length = 480 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R + D DE+ N+L++GPTG G Sbjct: 126 APHKIKATLDEYVIGQEYAKKVMSVAVYNHYKR--VATDTMDEIAIEKSNMLMIGPTGCG 183 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 184 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEH 237 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 55/209 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++N Sbjct: 237 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVN 296 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 297 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPNLLEKVTVDDLRNFGMI 356 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ + L + IL + + ++ QY++L+ + + L+F ED++ A+A Sbjct: 357 PEFIGRLPIIFTMNGLTEDMMVQILREPRNAILKQYQKLLALDEVKLEFEEDALRAIAAK 416 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ ++ GAR L+ ++E + DI + Sbjct: 417 AMEKHT-----GARALRAILEEYMLDIMY 440 >gi|288818081|ref|YP_003432429.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter thermophilus TK-6] gi|288787481|dbj|BAI69228.1| ATP-dependent protease Clp ATPase subunit [Hydrogenobacter thermophilus TK-6] gi|308751683|gb|ADO45166.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Hydrogenobacter thermophilus TK-6] Length = 411 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI A+ SG ++R EGVQ+ LL ++EG+ + ++ Sbjct: 176 GIVYIDEIDKI-AKKSGINPSITRDVSGEGVQQALLKIMEGTVANVPPQGGRKHPHQEFI 234 Query: 290 SINTDHILFIASGAF--------------------------------HVSRPADLL---- 313 ++T ILFI GAF + P DL+ Sbjct: 235 QVDTTDILFICGGAFVGLEDIIKRRLGKSTIGFESQVKGAFKEMNVLELVEPDDLIHFGL 294 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L + D ILT+ +++L+ QYK+L + + + L+FT++++ +A Sbjct: 295 IPEFIGRLPVIAVLDELTEEDLVRILTEPKNSLVKQYKKLFEMDNVDLEFTQEALIEIAR 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 ++ + GAR L+ +ME ++ D+ F ++ K V+ID E VR Sbjct: 355 ESIKRKT-----GARGLRAIMEEIMTDVMFEIPSMKGVKKVIIDEEVVR 398 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 4/103 (3%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPTGV 64 P +I S LD Y++GQ+ AKR +++A+ N ++R +++ D E+ NILL+GPTG Sbjct: 61 PEKIKSFLDEYVVGQERAKRILSVAVYNHYKRVKAKEMGLGFDDVEVEKSNILLIGPTGS 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GKT +++ LA+L PF + T TE GYVG +VE ++ L+ Sbjct: 121 GKTLLAKTLAKLLNVPFAIADATSLTEAGYVGEDVENVLTRLL 163 >gi|227503051|ref|ZP_03933100.1| ATP-dependent protease ATP-binding subunit [Corynebacterium accolens ATCC 49725] gi|227076112|gb|EEI14075.1| ATP-dependent protease ATP-binding subunit [Corynebacterium accolens ATCC 49725] Length = 428 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 12/123 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--------ELMPKNI 56 P +I S LD+Y+IGQ AKR +++A+ N ++R + D R E+ NI Sbjct: 65 PSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSNI 124 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 L++GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V Sbjct: 125 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 184 Query: 117 SRR 119 ++R Sbjct: 185 AQR 187 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 57/221 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 188 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 247 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 248 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGAKLGTEDEREKVDLFSQVRPEDLVKFGL 307 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ +++L+ QY L + + L + ++DA+A+ Sbjct: 308 IPEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAE 367 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A+ + GAR L+ ++E +L + F D ++ + V Sbjct: 368 LALERKT-----GARGLRAILEELLVPVMFELPDREDISAV 403 >gi|296453942|ref|YP_003661085.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum JDM301] gi|296183373|gb|ADH00255.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum JDM301] Length = 459 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 38/140 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHGGQTGKQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 PA R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SAPAQTRATRRNSDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVA 110 E GYVG +VE +++ L+ A Sbjct: 185 EAGYVGDDVETVLQRLLQAA 204 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 147/345 (42%), Gaps = 98/345 (28%) Query: 141 KTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200 ++A + TR R SD D+EVA SN + G VG L++ ++VM Sbjct: 124 QSAPAQTRATRRN-------SDPLADVEVAK-----SNILLLGPTGVGKTYLAQALARVM 171 Query: 201 GSGRKKKIRMSVQKCYPELMRDESDRLI------DMDTVHRDSIQMVE------NYGIVF 248 P ++ D + D++TV + +Q + +GI++ Sbjct: 172 N--------------VPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIY 217 Query: 249 LDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY-----------GSINT 293 +DE DKI AR SG ++R EGVQ+ LL ++EG+ S ++T Sbjct: 218 IDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDTAQMDT 276 Query: 294 DHILFIASGAF----------------------HVSRPAD----------------LLPE 315 ILFI GAF H + D LLPE Sbjct: 277 RGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPE 336 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV LK L D ILT + LI QY++L +G+ L FTE +I A+AD+A+ Sbjct: 337 FIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAI 396 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + GAR L++++ER L+D F L + K V++D V Sbjct: 397 KQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 436 >gi|291530697|emb|CBK96282.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium siraeum 70/3] Length = 430 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 5/106 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ----QLPADLRDELMPKNILLVGPTGV 64 P E+ LD+YIIGQ +AK+ + +++ N +++ + AD EL N+LL+GPTGV Sbjct: 63 PTELKEILDKYIIGQDEAKKTICVSVYNHYKKNFFGDEATAD-EIELQKSNVLLLGPTGV 121 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT I++ LA + PF + T T+ GYVG +VE ++ L+ A Sbjct: 122 GKTMIAQTLANVLKVPFAIADATTLTQAGYVGEDVENVLLRLIQAA 167 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 58/229 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG S+V + G Sbjct: 176 HGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIQ 235 Query: 291 INTDHILFIASGAF----------------------------------HVSRPADL---- 312 INT +ILFI GAF H P DL Sbjct: 236 INTKNILFICGGAFEGIDKLIMQRTSSSALGFGAEVKSKQDNKINEALHQVEPEDLVKFG 295 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L L++ IL++ ++ ++ QY + +GI L+ +D++ A+A Sbjct: 296 IIPELVGRLPVIAVLDDLDEDALVKILSEPKNAILKQYSYMFSLDGIELEINDDAMRAIA 355 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYV 419 A + GAR L+TV+E L DI F A SD V++ E V Sbjct: 356 KKAAERKT-----GARGLRTVVEEALSDIMFDAPSDDTISKVILTGECV 399 >gi|282856772|ref|ZP_06266033.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pyramidobacter piscolens W5455] gi|282585395|gb|EFB90702.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pyramidobacter piscolens W5455] Length = 432 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG S++ K G + Sbjct: 190 GIVYIDEIDKIARKSESTSITRDVSGEGVQQALLKILEGTVSNIPPKGGRKHPQQEFIQV 249 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADL----- 312 NT +ILFI GAF V R P DL Sbjct: 250 NTANILFICGGAFDGLENIVGRRVNKKVIGFDSDIRNGTAADRYDLLRQVEPEDLVSFGF 309 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR P+ V L+SL+ +LT+ +++L+ QY++ + E + LD+ ++I A+A+ Sbjct: 310 IPELVGRLPLLVPLQSLDADALVRVLTEPKNSLVRQYQKNFEMENVELDYQPEAIRAIAE 369 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEKTVVIDAEYV 419 A + + GAR L+ +ME ++ ++ + S + Q K +VI EYV Sbjct: 370 KAASKGT-----GARGLRAIMENLMLNLMYEVPSSNTKGQIKKIVITPEYV 415 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+A+++A+ N ++R + EL N+LL+GPTG GKT Sbjct: 78 PKEIKEYLDEYVIGQDYAKKAISVAVYNHYKRIVTGFSGGEVELQKSNLLLLGPTGSGKT 137 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+ PF + T TE GYVG +VE ++ LV A Sbjct: 138 LLAQSLAKKLNVPFAISDATTLTEAGYVGEDVENVLVRLVQAA 180 >gi|61211644|sp|Q8G5R1|CLPX_BIFLO RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX Length = 472 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 +P R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145 E GYVG +VE +++ L+ A V ++ DE+ + A + E TS Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233 Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192 TR+V + K+ +G I+ ++ D++ D I GGA VG+ ++ Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270 Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD+A+ + GAR L++++ER L+D F L + + V++D V Sbjct: 391 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436 >gi|34556512|ref|NP_906327.1| ATP-dependent protease ATP-binding subunit ClpX [Wolinella succinogenes DSM 1740] gi|46576390|sp|Q7MAS4|CLPX1_WOLSU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 1 gi|34482226|emb|CAE09227.1| CLP PROTEASE [Wolinella succinogenes] Length = 417 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 4/116 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRDELMPKNILLVGPTG 63 +P+E+ S LD Y+IGQ+ AK+ ++A+ N ++R + L + E+ NILL+GPTG Sbjct: 62 TPKELKSALDEYVIGQERAKKVFSVAVYNHYKRIFKKELLEEEDETEISKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR P + T TE GYVG +VE I+ L+ A V+++ R Sbjct: 122 SGKTLMAQTLARFLNVPIAICDATSLTEAGYVGEDVENILTRLLQAAEGDVKKAER 177 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 178 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNVPPKGGRKHPNQDFVQI 237 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI GAF H+ P DL +P Sbjct: 238 DTSQILFICGGAFDGMIELIKRRMGGNSLGFHGDKKGKSEESALLHLVEPDDLVSYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + K ILT ++ L+ QY++L + L F ++++A+A++A Sbjct: 298 ELIGRLHVITTLDEITKEAMLEILTKPKNALVKQYQKLFTMDEAELSFEPEALEAIAELA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E V D+ + +L+E V+I E V Sbjct: 358 IKRKT-----GARGLRAIIEEVTLDLMYDLPELKEYEVIITKECV 397 >gi|288553619|ref|YP_003425554.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus pseudofirmus OF4] gi|288544779|gb|ADC48662.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus pseudofirmus OF4] Length = 424 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+++++A+ N ++R + EL NI ++GPTG GKT Sbjct: 64 PQEIRQILDDYVIGQDQAKKSLSVAVYNHYKRINSMNRSEEVELAKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313 +T ++LFI GAF ++S+ P DLL Sbjct: 236 DTTNVLFICGGAFDGIEQIIKRRLGKKVIGFGSEVKQEELKPGEYLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+ ILT ++ L+ QY++L++ + + L+FT++++ +A Sbjct: 296 PEFIGRLPVISSLEPLDTDALVEILTKPKNALVKQYQKLLELDDVELEFTDEALVEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMF 379 >gi|269926533|ref|YP_003323156.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum terrenum ATCC BAA-798] gi|269790193|gb|ACZ42334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermobaculum terrenum ATCC BAA-798] Length = 422 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 2/112 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P++I LD Y++GQ AK+ +++A+ N ++R + D EL NIL++GPTG GKT Sbjct: 67 PKKIYELLDNYVVGQDRAKKTLSVAVYNHYKRVAADMQIDDVELQKSNILMIGPTGSGKT 126 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 +++ LA++ PF + T TE GYVG +VE I+ L+ A ++I R R Sbjct: 127 LLAQTLAKILDVPFSIADATALTEAGYVGEDVENILLRLIQAADLDIQRAER 178 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 179 GIIYIDEIDKIARKGDNPSITRDVSGEGVQQALLKIIEGTVANVPPQSGRKHPHQEFIQI 238 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF HV P DLL Sbjct: 239 DTTNILFICGGAFEGLEDIVAKRIGAKRSLGFARQEYDSGQSEGSVLQHVI-PEDLLKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV V L L K D ILT ++ +I QY++LM + + L FT D+++A A Sbjct: 298 LIPEFIGRLPVVVTLDPLTKEDLIHILTKPKNAIIKQYQKLMALDNVELQFTNDALEAAA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 + A+ + GAR L++ +E VL + + L + ++D + +R Sbjct: 358 EEAIARKT-----GARGLRSTIEEVLLETMYEIPSLTGVRKCIVDGDTIR 402 >gi|237750429|ref|ZP_04580909.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC 43879] gi|229373959|gb|EEO24350.1| ATP-dependent protease ATP-binding subunit [Helicobacter bilis ATCC 43879] Length = 428 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPA----------DLRD--EL 51 SP+E+ + LD Y++GQ+ AK+ ++A+ N ++R Q++ A DL + EL Sbjct: 64 SPKELKAHLDEYVVGQEQAKKVFSVAIYNHYKRLLHQQRVAAKTDENIVNVTDLEENVEL 123 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR P + T TE GYVG +VE I+ L+ A Sbjct: 124 SKSNILLIGPTGSGKTLMAQTLARFLDIPIAISDATSLTEAGYVGEDVENILTRLLQAA 182 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ + Sbjct: 192 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIKM 251 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-----------------LLP 314 +T +ILFI GAF + + AD L+P Sbjct: 252 DTSNILFICGGAFDGVEDIIKRKLGNNVLGFDSNPKQQADEDNILHKIETDDLVSFGLIP 311 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L S++K ILT ++ +I QY++L + +G L F +D+I+ +A++A Sbjct: 312 ELIGRLHVIATLDSISKEAMISILTQPKNAIIKQYQKLFELDGAKLVFEDDAIERIAELA 371 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F +L V+I + V Sbjct: 372 MERKT-----GARGLRAIVEDFSLDIMFDLPNLSGYEVIITRKCV 411 >gi|239621943|ref|ZP_04664974.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132956|ref|YP_004000295.1| clpx [Bifidobacterium longum subsp. longum BBMN68] gi|317482287|ref|ZP_07941308.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA] gi|322688892|ref|YP_004208626.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis 157F] gi|322690867|ref|YP_004220437.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|239515134|gb|EEQ55001.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517063|emb|CBK70679.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bifidobacterium longum subsp. longum F8] gi|311773938|gb|ADQ03426.1| ClpX [Bifidobacterium longum subsp. longum BBMN68] gi|316916303|gb|EFV37704.1| ATP-dependent Clp protease [Bifidobacterium sp. 12_1_47BFAA] gi|320455723|dbj|BAJ66345.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320460228|dbj|BAJ70848.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium longum subsp. infantis 157F] Length = 472 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 +P R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145 E GYVG +VE +++ L+ A V ++ DE+ + A + E TS Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233 Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192 TR+V + K+ +G I+ ++ D++ D I GGA VG+ ++ Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270 Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD+A+ + GAR L++++ER L+D F L + + V++D V Sbjct: 391 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436 >gi|197122724|ref|YP_002134675.1| ATP-dependent protease ATP-binding subunit ClpX [Anaeromyxobacter sp. K] gi|220917507|ref|YP_002492811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-1] gi|196172573|gb|ACG73546.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter sp. K] gi|219955361|gb|ACL65745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Anaeromyxobacter dehalogenans 2CP-1] Length = 427 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 13/116 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADLRD-----ELMPK 54 +P EI S LD Y++GQ AK+ +++A+ N ++R P R EL Sbjct: 63 TPAEIKSFLDDYVVGQDRAKKVLSVAVYNHYKRVYSRKPARPARPGQARAAQDDVELQKS 122 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ A Sbjct: 123 NILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHNA 178 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 69/216 (31%) Query: 245 GIVFLDEFDKIV--------ARDSGNGIGVSREGVQRDLLPLVEGSSVST---------- 286 GIV++DE DKI RD G EGVQ+ LL ++EG+ + Sbjct: 188 GIVYVDEIDKIARKGDTPSPTRDVGG------EGVQQALLKIIEGTRANVTPRGGKKYNQ 241 Query: 287 -KYGSINTDHILFIASGAF----HVSR------------------------------PAD 311 +Y ++T ++LFI GAF V R P D Sbjct: 242 QEYIQVDTSNVLFIVGGAFCGLEQVIRRRVGVKGLGFGAKIERKEEASLGELLARVEPGD 301 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR P+ L L++ D ILT ++ L QY +L E + L FT++S Sbjct: 302 LVRFGMIPEFVGRLPIIATLSDLSEDDLVTILTQPKNALTKQYIKLFDLEKVKLSFTKES 361 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A A A+ S GAR L+ ++E+ + DI + Sbjct: 362 LRATAREAMRRKS-----GARGLRAILEQAMLDIMY 392 >gi|330840087|ref|YP_004414667.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] gi|329747851|gb|AEC01208.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] Length = 430 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 66/232 (28%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290 I+ EN GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 184 IEKAEN-GIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRK 241 Query: 291 --------INTDHILFIASGAF-------------------------------------- 304 ++T +ILFI GAF Sbjct: 242 HPEAPTIKVDTKNILFIVGGAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDEL 301 Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 H RP DL+ PEI GR PV L++L++ D ILT+ + + QY++L+ + + Sbjct: 302 IHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMDNV 361 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L F ED++ A+A A+ + GAR L+ ++E + D+ F EK Sbjct: 362 ELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEK 408 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P I + LD YII Q AK+ +++A+ N ++R + D ++ N++++GP+G GK Sbjct: 77 PHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCGK 136 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TA+ L+RL PF + + TE G+VG +VE +R+L A Sbjct: 137 TALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 180 >gi|227546001|ref|ZP_03976050.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213635|gb|EEI81484.1| ATP-dependent protease ATP-binding subunit [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 472 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 65 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 124 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 +P R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 125 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 184 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145 E GYVG +VE +++ L+ A V ++ DE+ + A + E TS Sbjct: 185 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 233 Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192 TR+V + K+ +G I+ ++ D++ D I GGA VG+ ++ Sbjct: 234 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 293 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 212 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 270 Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 271 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 330 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A Sbjct: 331 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 390 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD+A+ + GAR L++++ER L+D F L + + V++D V Sbjct: 391 IADIAIKQGA-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 436 >gi|295132507|ref|YP_003583183.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda SM-A87] gi|294980522|gb|ADF50987.1| ATP-dependent protease ATP-binding subunit [Zunongwangia profunda SM-A87] Length = 410 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 58/222 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG++V+ K+ + Sbjct: 174 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQALLKLLEGTTVNVPPKGGRKHPDQKFIEV 233 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADL-----L 313 +T++ILFIA GAF ++S+ P DL + Sbjct: 234 DTENILFIAGGAFDGIEKNISKRLNMQAVGFSASKSDDNIERTNLLKYIIPKDLKDFGLI 293 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P ++ L++ R ILT+ ++ +I QY +L + + I T++++D + + Sbjct: 294 PEIIGRLPALTYMNPLDQETLRSILTEPKNAIIKQYTKLFEMDEIEFTATDEALDFIVEK 353 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVV 413 AV +GAR L+++ E +L D F SD+ E T+ Sbjct: 354 AVEYK-----LGARGLRSLCEAILTDAMFDLPESDVTEFTLT 390 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKT 67 P+ I + LD YIIGQ+ K+ +++A+ N ++R P +D E+ NI++VG TG GKT Sbjct: 62 PKSIKAFLDEYIIGQEATKKVMSVAVYNHYKRLLQPDSDDDIEIQKSNIVMVGETGTGKT 121 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ +A++ P V+ T TE GYVG +VE I+ L+ A V +++R Sbjct: 122 LMAKTIAKMLNVPLAIVDATVLTEAGYVGEDVEGILTRLLQAADYNVDKAQR 173 >gi|306836716|ref|ZP_07469679.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium accolens ATCC 49726] gi|304567394|gb|EFM42996.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium accolens ATCC 49726] Length = 431 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 12/123 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--------ELMPKNI 56 P +I S LD+Y+IGQ AKR +++A+ N ++R + D R E+ NI Sbjct: 68 PSQISSFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALDARRKKAEGEEVEISKSNI 127 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 L++GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A V Sbjct: 128 LMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 187 Query: 117 SRR 119 ++R Sbjct: 188 AQR 190 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGAKLGTEDEREKVDLFSQVRPEDLVKFGL 310 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ +++L+ QY L + + L + ++DA+A+ Sbjct: 311 IPEFIGRLPVVATVDNLDREALVKVLTEPKNSLLKQYSRLFEMDDCELHMDDGALDAIAE 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYV 419 +A+ + GAR L+ ++E +L + F D ++ + V I AE V Sbjct: 371 LALERKT-----GARGLRAILEELLVPVMFELPDREDISAVHITAECV 413 >gi|170516913|gb|ACB15392.1| ClpX [Bifidobacterium longum] Length = 467 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 90 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGKQAKQ 149 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 +P R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 150 SVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 209 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145 E GYVG +VE +++ L+ A V ++ DE+ + A + E TS Sbjct: 210 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 258 Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192 TR+V + K+ +G I+ ++ D++ D I GGA VG+ ++ Sbjct: 259 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 237 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 295 Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 296 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 355 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A Sbjct: 356 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 415 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD+A+ + GAR L++++ER L+D F L + + V++D V Sbjct: 416 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 461 >gi|206890826|ref|YP_002248105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermodesulfovibrio yellowstonii DSM 11347] gi|254763870|sp|B5YI39|CLPX_THEYD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|206742764|gb|ACI21821.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thermodesulfovibrio yellowstonii DSM 11347] Length = 409 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI L+ Y+IGQ+ AK+ +++A+ N ++R DE+ NI+L+GPTG GKT Sbjct: 61 TPQEIHKFLNDYVIGQERAKKILSVAVYNHYKRI-FKGTSSDEIQKSNIMLIGPTGTGKT 119 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 LLAQTLAKFLDVPFAIADATTLTEAGYVGEDVENILLKLLQNA 162 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ + +Y + Sbjct: 172 GIIYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIVEGTLANIPPQGGRKHPQQEYIQL 231 Query: 292 NTDHILFIASGAF-------------------------------HVSRPADLL-----PE 315 +T +ILFI GAF + P DL+ PE Sbjct: 232 DTTNILFICGGAFVGLEEIIKKRIGKRTIGFLSETKKIDEENVLSQAEPEDLIKYGMIPE 291 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GRFPV L L++ ILT ++ L+ QY++L +G+ L FT+D++ A+A A+ Sbjct: 292 FVGRFPVVATLNQLDEDALIEILTKPKNALVKQYQKLFSIDGVKLTFTDDALRAIAKKAI 351 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L++++E ++ D+ + Sbjct: 352 ERKT-----GARALRSILEDIMLDVMY 373 >gi|300871120|ref|YP_003785992.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Brachyspira pilosicoli 95/1000] gi|300688820|gb|ADK31491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Brachyspira pilosicoli 95/1000] Length = 402 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVG 65 P+EI + LD+Y+IGQ AK+ +++A+ N ++R D E+ N+LL+GPTG G Sbjct: 61 LPPKEIKALLDQYVIGQDYAKKILSVAVYNHYKRIMQDNTNNDVEIEKSNVLLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++R LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLLARTLAKALNVPFAIADATTVTEAGYVGDDVENILLRLIQNA 165 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 57/207 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-SVSTKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S YG I Sbjct: 175 GIIYIDEIDKISRKSESRSITRDVSGEGVQQALLKIIEGTISSVPPYGGRKHPHQNNIDI 234 Query: 292 NTDHILFIASGAF-----------------------------------HVSR----PADL 312 NT +ILFI GAF H++ L Sbjct: 235 NTSNILFICGGAFIDIEKSIAERTSKKGLGFAAEVNSMENLEYDEIMKHIATEDLVKFGL 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ L + D IL + +++LI QYK+L + + + L F ++++ + Sbjct: 295 IPELIGRLPVVATLQELKEEDLIRILKEPKNSLIKQYKKLFEYDNVDLSFDDEALKVIVK 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLED 399 A+ ++ GAR L+ + E+V+ D Sbjct: 355 KAMEEHT-----GARGLRALFEKVMLD 376 >gi|295425157|ref|ZP_06817862.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus amylolyticus DSM 11664] gi|295065216|gb|EFG56119.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus amylolyticus DSM 11664] Length = 422 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P +I +LD Y+IGQ KR +++A+ N ++R Q+ D +L NI L+GPTG GKT Sbjct: 64 PMDIKKQLDDYVIGQDHTKRVLSVAVYNHYKRIGQMDIDSSTQLQKSNIALIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF + T TE GYVG +VE I+ L+ A + ++R Sbjct: 124 YLAQTLAKILIVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDIESAQR 175 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 176 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIRM 235 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADL-----L 313 +T +ILFI GAF H DL + Sbjct: 236 DTTNILFIVGGAFDGIEQIVKNRLGKKTIGFGAENEVNKIDADDWTHYLTTGDLVKFGMI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L+ D ILT+ ++ L+ QY++L+ + + L FT+ ++ A+AD+ Sbjct: 296 PEFIGRIPVISTLDKLDSDDLVRILTEPKNALVKQYQKLLSLDDVQLTFTDGALHAIADL 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ N +GAR L+T++E L DI + S +D+++ V D Sbjct: 356 AIERN-----MGARGLRTIIENALIDIMYRTPSENDIEKVEVTKD 395 >gi|291548471|emb|CBL21579.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Ruminococcus sp. SR1/5] Length = 475 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y+IGQ+ AK+ +++ + N ++R + D D E+ N+L++GPTG G Sbjct: 123 APHKIKATLDEYVIGQEYAKKVMSVGVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGCG 180 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ E Sbjct: 181 KTYLVKMLARLLQVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EH 234 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 I +E +D + K +N R+V + ++ G + E+++ V TS + Sbjct: 235 GIIFIDE--IDK-IAKKKNTNQRDVSGEAVQQGLLKLLEGSEVEVPVGATSKN 284 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ LL L+EGS V G ++N Sbjct: 234 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGLLKLLEGSEVEVPVGATSKNAMVPMVTVN 293 Query: 293 TDHILFIASGAF-------------------------------HV--------SRPADLL 313 T +ILFI GAF HV R ++ Sbjct: 294 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDDDPHVLEKVTVDDLRAFGMI 353 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L + IL + ++ ++ QYK+L+ + + L+F + ++ A+A Sbjct: 354 PEFIGRLPIIFTLNGLTEDMLVKILKEPKNAILKQYKKLLALDEVKLEFEDGALHAIARK 413 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A+ ++ GAR L+ ++E + DI + D VVI Y++ Sbjct: 414 ALERHT-----GARALRAILEEYMLDIMYEIPKDDNIGEVVITEGYIQ 456 >gi|325283536|ref|YP_004256077.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus proteolyticus MRP] gi|324315345|gb|ADY26460.1| ATP-dependent Clp protease ATP-binding subunit clpX [Deinococcus proteolyticus MRP] Length = 404 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SP+EI + LD ++IGQ +AK+A+A+A+ + ++R P L NILL+GPTG GKT Sbjct: 63 SPKEIKAFLDEFVIGQDEAKKALAVAVVSHYQRLSHP---DAGLQKSNILLIGPTGTGKT 119 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA + PF + T TE GYVG +VE +I L+ A Sbjct: 120 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQSA 162 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 52/205 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSS--VSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG++ V + G + Sbjct: 172 GIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTTAQVPPQGGRKHPQQELVQV 231 Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317 +T +ILFI GAF ++R P DL +PE Sbjct: 232 DTRNILFIVGGAFDGMEDIARSRTNVRSVGFGAEAKGEEHEEVRFMPEDLVKFGLIPEFV 291 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L+ L++ ILT+ + +I QY+ L +G+ L FTE+++ +A A Sbjct: 292 GRLPLVVQLQDLDEEALVRILTEPQGAIIRQYQALFGFQGVDLTFTEEALQEVAKRARER 351 Query: 378 NSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+ V+E+ + D+ F Sbjct: 352 KT-----GARGLRAVLEKAMTDLLF 371 >gi|255557853|ref|XP_002519956.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] gi|223541002|gb|EEF42560.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] Length = 698 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 17/120 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA-----------DLRDE 50 +P+EI LD+++IGQ AK+ +++A+ N ++R ++ P D E Sbjct: 280 TPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLKKGPGEESGSSDAVDDDDNVE 339 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L N+LL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ VA Sbjct: 340 LEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLSVA 399 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 409 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 468 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ A Sbjct: 469 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAVTSSLLESVESA 528 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +L + +LT+ ++ L QYK+L + L FTE Sbjct: 529 DLIAYGLIPEFIGRFPILVSLSALTEDQLVRVLTEPKNALGKQYKKLFSMNKVKLHFTEK 588 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A+ N+ GAR L+ ++E L + + D++ + +DA Sbjct: 589 ALRLIAKKAMAKNT-----GARGLRAILESTLTEAMYEIPDVKTGSDRVDA 634 >gi|116872701|ref|YP_849482.1| ATP-dependent protease ATP-binding subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463732|sp|A0AI71|CLPX_LISW6 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|116741579|emb|CAK20703.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 419 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P+EI L Y+IGQ+ AK+A+A+A+ N ++R + EL NI L+GPTG GK Sbjct: 64 PQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEEEVELSKSNICLIGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSA 167 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 177 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQI 236 Query: 292 NTDHILFIASGAF------------------------------HVSR--PADLL-----P 314 +T +ILFI GAF ++SR P DLL P Sbjct: 237 DTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKEDETYLSRVVPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L+++ ILT+ ++ L+ QYK +++ + + L+F ++ +A A Sbjct: 297 EFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E+++ ++ F Sbjct: 357 IERKT-----GARGLRSIIEQIMLEVMF 379 >gi|87301612|ref|ZP_01084452.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 5701] gi|87283829|gb|EAQ75783.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 5701] Length = 446 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI S LD+ ++GQ +AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 82 PQEIKSFLDQQVVGQDEAKKVLSVAVYNHYKRLAWQGDGKGETDRSATRLHKSNILLIGP 141 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 142 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVEQAQR 199 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 60/213 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 259 Query: 292 NTDHILFIASGAF----------------------------------HVSR---PADL-- 312 +T ILFI GAF HV R P DL Sbjct: 260 DTSQILFICGGAFVGLEEVVQRRLGRNSIGFLPADGRGRGHRELKASHVLRHLEPDDLVR 319 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GR PV L+ L+ ILT+ L+ Q++ LM + + L+F +I+A Sbjct: 320 YGLIPEFTGRLPVSAVLEPLDVRSLESILTEPRDALVKQFQTLMSMDSVRLEFEPGAIEA 379 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A A + GAR L+ ++E ++ D+ + Sbjct: 380 IAHEAHRRRT-----GARALRGIVEELMLDLMY 407 >gi|260887443|ref|ZP_05898706.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] gi|260862806|gb|EEX77306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Selenomonas sputigena ATCC 35185] Length = 431 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 66/232 (28%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVS----REGVQRDLLPLVEGSSVS-TKYGS-- 290 I+ EN GI++LDEFDKI AR SG ++ EGVQ+ LL ++EGS V T G Sbjct: 185 IEKAEN-GIIYLDEFDKI-ARKSGANNSITADPGHEGVQQALLKMLEGSVVEFTARGQRK 242 Query: 291 --------INTDHILFIASGAF-------------------------------------- 304 ++T +ILFI GAF Sbjct: 243 HPEAPTIKVDTKNILFIVGGAFVGIEDVIAKRIKKDAAGIGFGAEVEGKEKDAAKRFDEL 302 Query: 305 -HVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 H RP DL+ PEI GR PV L++L++ D ILT+ + + QY++L+ + + Sbjct: 303 IHKVRPEDLMQYGIIPEIIGRLPVICTLETLSEDDLLRILTEPKDAPVKQYEKLLAMDNV 362 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L F ED++ A+A A+ + GAR L+ ++E + D+ F EK Sbjct: 363 ELIFEEDALRAVAKKAIERKT-----GARSLKGIIEDTMLDVMFEIPRSDEK 409 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGK 66 P I + LD YII Q AK+ +++A+ N ++R + D ++ N++++GP+G GK Sbjct: 78 PHIIKAYLDEYIINQDRAKKILSVAVYNHYKRMKYGYMNEDGTDIEKSNVIMLGPSGCGK 137 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TA+ L+RL PF + + TE G+VG +VE +R+L A Sbjct: 138 TALLSHLSRLLDIPFAVTDASSLTEAGFVGADVEVAVRNLYYAA 181 >gi|154706445|ref|YP_001424147.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii Dugway 5J108-111] gi|189082494|sp|A9KDS7|CLPX_COXBN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|154355731|gb|ABS77193.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella burnetii Dugway 5J108-111] Length = 422 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + + VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFI GAF + P DL+ Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKIGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L+ L++ ILT+ ++ L+ QY++L + EG+ +DF ED++ A+ Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416 A A+ + GAR L++++E L D+ + + + VVID+ Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +++A+ N ++R Q D E+ NILL+GPTG G Sbjct: 62 TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LA++ PF + T TE GYVG +VE II+ L+ Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162 >gi|23099532|ref|NP_692998.1| ATP-dependent protease ATP-binding subunit [Oceanobacillus iheyensis HTE831] gi|46576554|sp|Q8CXB8|CLPX_OCEIH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|22777762|dbj|BAC14033.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Oceanobacillus iheyensis HTE831] Length = 425 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI LD Y+IGQ AK+ +++A+ N ++R + E+ NI ++GPTG GKT Sbjct: 64 PKEICDILDDYVIGQDKAKKNLSVAVYNHYKRVNSGKGNDEVEIAKSNIAMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARIINVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF--------------------HVSR-------------PADLL----- 313 +T +ILFI GAF H + P DLL Sbjct: 236 DTTNILFIVGGAFDGIDQVIKRRLGKKVIGFGSHEKQEDLDTGQLLSKVLPEDLLRYGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L L++ ILT ++ L+ QY++L + + + L+F E+++ +A Sbjct: 296 PEFIGRIPVIGSLTPLDEEALIEILTKPKNALVKQYQKLFEIDHVELEFEEEALQEIAKK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 356 AIERKT-----GARGLRSIIEGIIVDVMF 379 >gi|331701126|ref|YP_004398085.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus buchneri NRRL B-30929] gi|329128469|gb|AEB73022.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus buchneri NRRL B-30929] Length = 415 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 70/107 (65%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTG 63 +P +I+ +L+ ++IGQ++AKR +++A+ N ++R ++ ++ D EL NI ++GPTG Sbjct: 63 LTPAQILDKLNEFVIGQENAKRTLSVAVYNHYKRVNEMISEPDDDLELQKSNICIIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 SGKTYLAQTMAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 169 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 62/234 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------S 290 +GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G Sbjct: 178 HGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQ 237 Query: 291 INTDHILFIASGAFH------VSR----------------------------PADLL--- 313 I+T +ILFI GAF SR P DLL Sbjct: 238 IDTTNILFIVGGAFDGIEGIVKSRLGDKTIGFGTNSDEAAKVDAKNIMQSVIPEDLLKFG 297 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L L+ D ILT+ ++ L+ QYK+L++ +G L+F +++ +A Sbjct: 298 LIPEFIGRLPILTALDKLDDHDLVRILTEPKNALVKQYKKLIELDGAELEFAPGALEKMA 357 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLH 422 +A+ D GAR L++++E V+ DI F S +D+ + V+I E V H Sbjct: 358 QLAI-----ARDTGARGLRSIIEGVMRDIMFDLPSRNDVSK--VIITPETVTDH 404 >gi|195395804|ref|XP_002056524.1| GJ10182 [Drosophila virilis] gi|194143233|gb|EDW59636.1| GJ10182 [Drosophila virilis] Length = 683 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 399 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 452 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 453 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 512 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN + ILT+ + L+ QYK L Sbjct: 513 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 572 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED+++++A +A+ ++ GAR L+++ME +L D F + V Sbjct: 573 LGLDEVDLSFTEDAVESIATLAMERHT-----GARGLRSIMETLLLDPMFIVPGSDIRGV 627 Query: 413 VIDAEYVR 420 I AEYVR Sbjct: 628 HITAEYVR 635 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 329 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 388 Query: 109 VAINIVR 115 N+ R Sbjct: 389 ANYNVER 395 >gi|23465516|ref|NP_696119.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium longum NCC2705] gi|23326176|gb|AAN24755.1| ATP-dependent specificity component of the Clp protease [Bifidobacterium longum NCC2705] Length = 497 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 67/240 (27%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P +I L+RY+IGQ++AKRA+++A+ N ++R Q Sbjct: 90 PAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQ 149 Query: 42 QLPADLRD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 +P R E+ NILL+GPTGVGKT +++ LAR+ PF+ + T T Sbjct: 150 SVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLT 209 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILDALVGKTATS 145 E GYVG +VE +++ L+ A V ++ DE+ + A + E TS Sbjct: 210 EAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGEN-----------TS 258 Query: 146 NTREVFRK-------KLRDGEISDKEIDIEVADTSSDISNFD------IPGGASVGILNL 192 TR+V + K+ +G I+ ++ D++ D I GGA VG+ ++ Sbjct: 259 ITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDI 318 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 60/231 (25%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTKY---------- 288 +GI+++DE DKI AR SG ++R EGVQ+ LL ++EG+ S Sbjct: 237 QHGIIYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQD 295 Query: 289 -GSINTDHILFIASGAF----------------------HVSRPAD-------------- 311 ++T ILFI GAF H + D Sbjct: 296 VAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAE 355 Query: 312 --LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A Sbjct: 356 FGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRA 415 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AD+A+ + GAR L++++ER L+D F L + + V++D V Sbjct: 416 IADIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASV 461 >gi|297626028|ref|YP_003687791.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding subunit ClpX) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921793|emb|CBL56353.1| ATP-dependent Clp protease (ATP-dependent Clp protease, ATP-binding subunit ClpX) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 425 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 6/108 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EIVS L+ YIIGQ AK+A+A+A+ N ++R Q AD EL NILL+GPT Sbjct: 65 PAEIVSFLNSYIIGQDAAKKALAVAVYNHYKRVQAQADSSSKHDDDVELAKSNILLIGPT 124 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 GCGKTYLAQTLARMLNVPFAMADATALTEAGYVGEDVENILLKLLQAA 172 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 182 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 241 Query: 292 NTDHILFIASGAFHV---------------------------------SRPADL-----L 313 +T ++LFI GAF RP DL + Sbjct: 242 DTTNVLFIVGGAFSGLEEIIADRVGQGGVGFTNDSVKRQPVGLDPFAGVRPEDLHTFGLI 301 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV + L+ R IL + + L+ Q+++L + +G+ L+ T+D++ A+A+ Sbjct: 302 PEFIGRLPVITTVPRLDADVLRRILVEPRNALVKQFEKLFELDGVELELTDDAVSAVAEK 361 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 AV N+ GAR L+ ++E L D+ F +E VVI + V Sbjct: 362 AVTRNT-----GARGLRAILEETLLDVMFEVPSHEEIGQVVITGDVVH 404 >gi|239907452|ref|YP_002954193.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio magneticus RS-1] gi|239797318|dbj|BAH76307.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Desulfovibrio magneticus RS-1] Length = 417 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 P EI LD Y+IGQ+ AK+ +A+A+ N ++R E+ NILL+GPTG Sbjct: 62 LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGSAGADDVEIDKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF + PADL+ Sbjct: 238 NTANILFIVGGAFIGLDKIVGQRQRGSAMGFGAKVEAKSDDDLSKLLTQAHPADLIKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L ++D ILT+ ++ L+ QY++L + + + L F+++++DA+A Sbjct: 298 IPEFVGRIPILTSLEELTQTDLVRILTEPKNALVKQYQKLFELDKVRLRFSKNALDAIAQ 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ VME ++ DI + L Sbjct: 358 KAIERKT-----GARGLRNVMESIMLDIMYKLPSL 387 >gi|291543931|emb|CBL17040.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ruminococcus sp. 18P13] Length = 421 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLV 59 MKL P EI LD Y++GQ AK A+++++ N ++R D D EL N+LL+ Sbjct: 63 MKL---LKPAEIKKVLDEYVVGQDAAKVALSVSVYNHYKRIFSQDDGEDVELQKSNVLLL 119 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTGVGKT +++ LAR PF + T TE GYVG +VE ++ L+ A V + R Sbjct: 120 GPTGVGKTFLAQTLARTLDVPFAIADATTITEAGYVGDDVENVLLRLIQAANYDVEAAER 179 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 57/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + + VS EGVQ+ LL ++EG S+V + G I Sbjct: 180 GIIYIDEIDKIARKSENTSLTRDVSGEGVQQALLKIIEGTVSNVPPQGGRKHPNQEFIHI 239 Query: 292 NTDHILFIASGAF-----HVSR----------------------------PADLL----- 313 NT +ILFI GAF +S+ P DL+ Sbjct: 240 NTKNILFICGGAFDGLERAISKRLQSSSLGFGADVISKKAKIKNIFRKAIPQDLVKFGMV 299 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR P+ L L+++ ILT+ ++ L+ QY +L + I L ++++A+A Sbjct: 300 PELVGRLPIITALDELDEASLVRILTEPKNALVKQYCKLFGYDNIELVIEPEALEAIAKR 359 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEYVRLH 422 A+ + GAR L+ ++E +L F A S+ V+++A V+ H Sbjct: 360 ALEQKT-----GARGLRAILEDILMQCMFDAPSESGIAKVIVNAACVQEH 404 >gi|33862334|ref|NP_893894.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9313] gi|46576458|sp|Q7V993|CLPX_PROMM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33640447|emb|CAE20236.1| putative Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9313] Length = 452 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I S LD+ ++GQ+ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQQIKSFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQR 201 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 69/231 (29%) Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284 DMD H GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V Sbjct: 193 DMDVEH-------AQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANV 245 Query: 285 STKYG---------SINTDHILFIASGAF---------HVSR------PAD--------- 311 + G I+T ILFI GAF + R P+D Sbjct: 246 PPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQKRLGRNAIGFMPSDGRGRSRANR 305 Query: 312 --------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 L+PE GR PV L+ L+ ILT+ L+ Q+ Sbjct: 306 DLQASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPRDALVKQFST 365 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 L+ + + L+F D+++A+A A + GAR L+ ++E ++ D+ + Sbjct: 366 LLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411 >gi|291523502|emb|CBK81795.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Coprococcus catus GD/7] Length = 475 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 65/112 (58%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P + ++LD ++IGQ AK+A+A+A+ N ++R E+ NIL++GPTG GKT Sbjct: 119 APHILKAKLDEFVIGQDQAKKAIAVAVYNHYKRVATNTMDDIEIEKSNILMIGPTGCGKT 178 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + + LARL P + T TE GY+G ++E ++ L+ A N + R Sbjct: 179 YLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDTERAER 230 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + VS E VQ+ LL L+EGS V G +I+T Sbjct: 231 GIIFIDEIDKIAKKKNTTARDVSGESVQQGLLKLLEGSEVEVPVGATSKNAMVPLVTIDT 290 Query: 294 DHILFIASGAF-------------HVS--------------------------RPADLLP 314 +ILFI GAF H S R ++P Sbjct: 291 RNILFICGGAFPDLENIVKERLTRHSSIGFSAELKDKYDQDKNIVSKVTIDDLRAFGMIP 350 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ V L+ LN+ IL + ++ ++ QY++L+ + + L F ++++ +AD A Sbjct: 351 EFIGRLPITVTLEGLNRDMMIRILKEPKNAILRQYQKLLALDEVDLRFDDEALGVIADKA 410 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + DI + Sbjct: 411 IARKT-----GARALRSIIEEFMLDIMY 433 >gi|157273437|gb|ABV27336.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Chloracidobacterium thermophilum] Length = 415 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 9/108 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P E+ + LD Y+IGQ++ K+ +A+A+ ++R ++ LR E+ NILL+GPT Sbjct: 65 PIEVKAFLDDYVIGQEETKKKLAVAVYQHYKRVEM---LRTRTAGDVEIAKSNILLIGPT 121 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF V+ T TE GYVG +VE II L+ A Sbjct: 122 GTGKTLLAQTLARILNVPFAIVDATTLTEAGYVGEDVENIILKLLQAA 169 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI +D I VS EGVQ+ LL ++EG+ + ++ ++ Sbjct: 179 GIIYIDEIDKICRKDDNPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEFYAV 238 Query: 292 NTDHILFIASGAFHV---------------------SRPA------------------DL 312 +T +ILFI GAF RPA L Sbjct: 239 DTTNILFICGGAFCGLERIIEKRIGKKSLGFNAKVDRRPAMKDGNIYSYVQPEDLIKYGL 298 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L L++ ILT ++ +I QY+ + + + L FT+D++ A+A Sbjct: 299 IPEFVGRLPVIGTLHELDEDALVDILTKPKNAIIKQYQRQFEWDNVRLRFTDDALRAIAH 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A +GAR L+ ++E ++ D + Sbjct: 359 MAYQRK-----VGARGLRMILEELMLDAMY 383 >gi|189485257|ref|YP_001956198.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287216|dbj|BAG13737.1| ATP-dependent Clp protease ATP-binding subunit X [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 412 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 P E+ LD Y+IGQ+ AK+ +++A+ N ++R + D EL N+LL+GPTG GKT Sbjct: 59 PGELKRFLDAYVIGQEHAKKILSVAVYNHYKRLEAIVSKDDVELQKSNVLLIGPTGAGKT 118 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LA++ PF + T TE GYVG +VE I+ L+ A +R++ + Sbjct: 119 LLAQTLAKILDVPFAISDATVLTEAGYVGEDVENILLRLIQNASFDIRKAEK 170 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 59/216 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 171 GIIYIDEIDKISRKSDTPSITRDVSGEGVQQALLKILEGTIANISPQGGRKHPQQEYLKI 230 Query: 292 NTDHILFIASGAF----------------------------------HVSRPAD------ 311 +T +ILFI GAF +SR Sbjct: 231 DTTNILFICGGAFDGLEKIIEKRLSKKTLGFITDGSNNRNDFKNMDYTLSRVESEDLIKF 290 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+ SD ILT+ ++ LI QY+++ + E + L F ++++ + Sbjct: 291 GLIPEFIGRVPVISALNHLSTSDLVHILTEPKNALIKQYQKMFQFENVELKFEREALEKI 350 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 A+ A+ S GAR L++++E +L D F D Sbjct: 351 AEEALKRGS-----GARGLRSIIENILLDAMFDIPD 381 >gi|29654073|ref|NP_819765.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii RSA 493] gi|153209304|ref|ZP_01947339.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii 'MSU Goat Q177'] gi|212212796|ref|YP_002303732.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii CbuG_Q212] gi|212219037|ref|YP_002305824.1| ATP-dependent protease ATP-binding subunit ClpX [Coxiella burnetii CbuK_Q154] gi|46576521|sp|Q83DJ1|CLPX_COXBU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238066653|sp|B6J8W3|CLPX_COXB1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|238066654|sp|B6J0V9|CLPX_COXB2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|29541339|gb|AAO90279.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella burnetii RSA 493] gi|120575420|gb|EAX32044.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Coxiella burnetii 'MSU Goat Q177'] gi|212011206|gb|ACJ18587.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella burnetii CbuG_Q212] gi|212013299|gb|ACJ20679.1| ATP-dependent endopeptidase clp ATP-binding subunit [Coxiella burnetii CbuK_Q154] Length = 422 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + + VS EGVQ+ LL L+EG+ S +Y + Sbjct: 175 GIIYIDEIDKIARKTDSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEYLQV 234 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T +ILFI GAF + P DL+ Sbjct: 235 DTSNILFICGGAFADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKY 294 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L+ L++ ILT+ ++ L+ QY++L + EG+ +DF ED++ A+ Sbjct: 295 GLIPEFVGRLPIITTLEELDEDALMRILTEPKNALVKQYRKLFEFEGVEIDFREDALKAI 354 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE--KTVVIDA 416 A A+ + GAR L++++E L D+ + + + VVID+ Sbjct: 355 AKRAIQQKT-----GARGLRSIVEHTLLDLMYDLPGVAAGLRKVVIDS 397 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P EI LD Y+IGQ+ AK+ +++A+ N ++R Q D E+ NILL+GPTG G Sbjct: 62 TPPEIHRMLDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKD-SVEISKSNILLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 KT +++ LA++ PF + T TE GYVG +VE II+ L+ Sbjct: 121 KTLLAQTLAKILDVPFAIADATTLTEAGYVGEDVENIIQKLL 162 >gi|242064888|ref|XP_002453733.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor] gi|241933564|gb|EES06709.1| hypothetical protein SORBIDRAFT_04g011760 [Sorghum bicolor] Length = 624 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD+++IGQQ AK+ +++A+ N ++R ++ AD + Sbjct: 143 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLTRRSAADCSESDSCTSDTDMV 202 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL NIL++GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ Sbjct: 203 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 260 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 5/105 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFP+ V L SL++ +LT+ ++ L QY +L + + L FTE+++ +A Sbjct: 461 LIPEFVGRFPILVSLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIA 520 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 A+ N+ GAR L++++E +L + + + + IDA Sbjct: 521 KRAIAKNT-----GARGLRSILESILTEAMYEIPETRTGKDKIDA 560 >gi|226356973|ref|YP_002786713.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus deserti VCD115] gi|226318963|gb|ACO46959.1| putative ATP-dependent Clp protease, ATP-binding subunit clpX [Deinococcus deserti VCD115] Length = 401 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P+EI + LD ++IGQ +AK+A+A+A+ + ++R P D+ L NILL+GPTG GKT Sbjct: 60 TPKEIKAYLDDFVIGQDEAKKALAVAVVSHYQRLAHP-DVN--LQKSNILLIGPTGTGKT 116 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA + PF + T TE GYVG +VE +I L+ A Sbjct: 117 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 159 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 52/205 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ V + G + Sbjct: 169 GIIYIDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 228 Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317 NT +ILFI GAF ++R P DL +PE Sbjct: 229 NTKNILFIVGGAFESMGEIARARTNVRAVGFGAEHKGDEKEELRFLPEDLVKFGLIPEFV 288 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L+ L++ ILT+ + +I QY+ L + + L+FT+ ++ +A A Sbjct: 289 GRLPLVVQLQDLDEEALVRILTEPQGAIIKQYQALFGFQNVNLEFTDAALREVAHRARER 348 Query: 378 NSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+ V+E+ + D+ F Sbjct: 349 KT-----GARGLRAVLEKAMTDLLF 368 >gi|283852375|ref|ZP_06369645.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. FW1012B] gi|283572223|gb|EFC20213.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. FW1012B] Length = 417 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRD-ELMPKNILLVGPTG 63 P EI LD Y+IGQ+ AK+ +A+A+ N ++R A D E+ NILL+GPTG Sbjct: 62 LPPAEIKRLLDEYVIGQEQAKKILAVAVHNHYKRVYYAGAAGADDVEIDKSNILLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILVQLLQNA 168 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 178 GIIYIDEIDKIARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRL 237 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 NT +ILFI GAF ++ PADL+ Sbjct: 238 NTANILFIVGGAFIGLEKIVGHRMRGTAMGFGAKVEARHDDDMSRMLSLAHPADLIKFGL 297 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ L+ L + D ILT+ ++ L QY++L + + + L FT+++++++A+ Sbjct: 298 IPEFIGRIPILTSLEELTREDLVRILTEPKNALTKQYQKLFELDKVRLRFTKNAMESIAE 357 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ VME ++ +I + L Sbjct: 358 KAIERKT-----GARGLRNVMESIMLEIMYKLPSL 387 >gi|240950345|ref|ZP_04754615.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus minor NM305] gi|240295156|gb|EER45975.1| ATP-dependent protease ATP-binding subunit ClpX [Actinobacillus minor NM305] Length = 414 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 182 GIVFIDEIDKITRKSESASITRDVSGEGVQQALLKLLEGTVANINPQGSRKHPKGETIPV 241 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADL--- 312 +T ILFI GAF P DL Sbjct: 242 DTSKILFICGGAFAGLDKIVESRTNKQGGIGFAAELKNDKERQDLTELFKQVEPEDLVRF 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L+++ ILT+ ++ +I QY+ L + EG+ L+FT+D++ A+ Sbjct: 302 GLIPELIGRLPVVTPLQELDEAALIQILTEPKNAIIKQYQALFQMEGVELEFTQDALVAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 A A+ V GAR L++++E +L D + L K V ++ V Sbjct: 362 AKKAI-----VRKTGARGLRSIVEGLLLDTMYDLPTLNAKKVTVEKACV 405 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 9/107 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVG 60 +P E+ + L+ Y+IGQ+ AK+ +++A+ N ++R L + L + EL NILL+G Sbjct: 65 TPHELHAHLNDYVIGQEYAKKVLSVAVYNHYKR--LKSALSNHEVTNGVELGKSNILLIG 122 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 123 PTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169 >gi|89889549|ref|ZP_01201060.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX [Flavobacteria bacterium BBFL7] gi|89517822|gb|EAS20478.1| ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX [Flavobacteria bacterium BBFL7] Length = 413 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 57/226 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EG+ V+ K+ + Sbjct: 175 GIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTVVNVPPKGGRKHPDQKFIEV 234 Query: 292 NTDHILFIASGAF----HVSR------------------------------PAD-----L 312 NT++ILFIA GAF V R P D + Sbjct: 235 NTENILFIAGGAFDGIEKVIRKRLNMQAVGFSASMSNDDVKDQDNILKYIIPKDVKDFGM 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PEI GR PV H+ L+ R ILT+ ++ +I QY +L + I T+ ++D + + Sbjct: 295 IPEIIGRLPVLTHMNPLDAGTLRAILTEPKNAIIKQYTKLFGMDDITFTITDGALDYIVE 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 A+ +GAR L+++ E + D F +K + Y Sbjct: 355 KAIEYK-----LGARGLRSLCEAIFTDAMFDLPSSDDKEFKVTKTY 395 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLVGPTGVGKT 67 P++I + LD YIIGQ+ K+ +++A+ N ++R Q+ D E+ NIL+VG TG GKT Sbjct: 63 PQDIKAFLDEYIIGQEFTKKVMSVAVYNHYKRLLQVDNDDDIEIQKSNILMVGQTGTGKT 122 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 I++ +AR+ P V+ T TE GYVG +VE I+ L+ A Sbjct: 123 LIAKTIARMLNVPLAIVDATVLTEAGYVGEDVESILTRLLQAA 165 >gi|157738413|ref|YP_001491097.1| ATP-dependent protease ATP-binding subunit ClpX [Arcobacter butzleri RM4018] gi|157700267|gb|ABV68427.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arcobacter butzleri RM4018] Length = 407 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R ++ D EL N+LL+GPTG G Sbjct: 61 TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQKEINDDIELNKSNVLLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ +++ P + T TE GYVG +VE ++ LV A ++++ R Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAER 174 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI I VS EGVQ+ LL +VEG+ +V K G + Sbjct: 175 GIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGAVVNVPPKGGRKHPGQEALQV 234 Query: 292 NTDHILFIASGAFH------------------------------VSR-------PADLLP 314 +T +ILFI GAF +S+ L+P Sbjct: 235 DTTNILFICGGAFDGLEDIIKKKQGANVLGFNQDKKSKNNEDKIISKVETDDLVKYGLIP 294 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L + + D ILT+ ++ LI QY +L + + ++L+F +D++ LA +A Sbjct: 295 ELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLEFEKDALKELAKLA 354 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + V GAR L++++E ++ DI F + KTVVI E V Sbjct: 355 I-----VRKTGARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVV 394 >gi|167627760|ref|YP_001678260.1| ATP-dependent protease ATP-binding subunit ClpX [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597761|gb|ABZ87759.1| ATP-dependent Clp protease subunit X [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 417 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVGK 66 P EI LD YIIGQ + K+ +++A+ N ++R D EL N+LL+GPTG GK Sbjct: 59 PIEIKKYLDDYIIGQDNPKKVLSVAVYNHYKRITSNTTKDDDTELKKSNVLLIGPTGSGK 118 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T ++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 119 TLFAQTLAKLLNVPFAIADATTLTEAGYVGDDVENIIVRLLQNA 162 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV K G + Sbjct: 172 GIIYIDEIDKIARKSESASITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQV 231 Query: 292 NTDHILFIASGAF--------------HVSRPAD-------------------------- 311 +T ILFI GAF + AD Sbjct: 232 DTSDILFICGGAFAGIEKVVKHRMDKVSIGFNADVIQQKNSLDTEKLMQKVESEDLTRFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L + D ILT+ ++ LI QY +L K + + ++F++ ++ +A Sbjct: 292 LIPELIGRLPIVTVLNELKEEDLVKILTEPKNALIKQYVKLFKFDDVAIEFSDQALVEIA 351 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 A+ + GAR L+T++E VL ++ F +SD EK ++ D Sbjct: 352 KKAIAKKT-----GARGLRTILENVLLEVMFHVPSSDDIEKVIIND 392 >gi|260906248|ref|ZP_05914570.1| ATP-dependent protease ATP-binding subunit ClpX [Brevibacterium linens BL2] Length = 397 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 11/113 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD-ELMPKNIL 57 PREI L Y++GQ+ AK+A+++A+ N ++R + L +D + E+ NIL Sbjct: 65 PREIFDFLQEYVVGQEPAKKALSVAVYNHYKRIRSLQGAEDTKTLGSDDTEVEIAKSNIL 124 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LVGPTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 125 LVGPTGSGKTYLAQSLAKRLDVPFAVADATALTEAGYVGEDVENILLKLIQAA 177 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 56/215 (26%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-------- 287 IQ E +GI+++DE DKI + I VS EGVQ+ LL ++EG+ S Sbjct: 181 IQKAE-HGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHP 239 Query: 288 ---YGSINTDHILFIASGAFHVSR--------------------------------PADL 312 + I+T ++LFI +GAF P DL Sbjct: 240 HQDFLQIDTTNVLFIVAGAFAGMEEIVAGRKGKHGIGFGALLQSKNDEEDLYADILPEDL 299 Query: 313 L-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L PE GR PV + +L+++ ILT+ ++ L+ QY+ + + + + L F D++ Sbjct: 300 LKFGLIPEFIGRLPVLATVSTLDRAALISILTEPKNALVKQYQRMFEFDNVELRFETDAL 359 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A++D+A+ L T GAR L++++E VL+ + F Sbjct: 360 EAISDLAL-LRGT----GARGLRSILEEVLQPVMF 389 >gi|19705311|ref|NP_602806.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|23813864|sp|Q8RHJ9|CLPX_FUSNN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|19713280|gb|AAL94105.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 423 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 61/228 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDNMGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ +GAR L+ ++E + DI F S ++++E T+ D Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITITKDT 411 >gi|218135128|ref|ZP_03463932.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC 43243] gi|217990513|gb|EEC56524.1| hypothetical protein BACPEC_03033 [Bacteroides pectinophilus ATCC 43243] Length = 465 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P EI ++LD Y+IGQ AK+ +++A+ N ++R + D D E+ N+L++GPTG G Sbjct: 120 APHEIKAKLDEYVIGQDYAKKVMSVAVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 177 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V Sbjct: 178 KTYLVKTLAKLLNVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDV 226 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + VS E VQ+ +L L+EGS + G ++NT Sbjct: 232 GIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSDIEVPVGATSKNAMVPLTTVNT 291 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 292 RNILFICGGAFPELDEVIKERLNEQASIGFIADLKDKYDNDDKLLSKVTLEDLRNFGMIP 351 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+K IL + ++ ++ QYK+L+ + + L+F + +++A+A+ A Sbjct: 352 EFLGRLPVVFTLDPLDKDMLVSILKEPKNAILKQYKKLLALDEVELEFDDSALEAIAEKA 411 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + + GAR L++++E + DI + D V+I +Y+ Sbjct: 412 LEKKT-----GARALRSIIEEFMLDIMYEIPKDDNIGRVIITGDYI 452 >gi|189219050|ref|YP_001939691.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylacidiphilum infernorum V4] gi|189185908|gb|ACD83093.1| ATP-dependent Clp protease ATP-binding subunit clpX [Methylacidiphilum infernorum V4] Length = 420 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 11/112 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----------ELMPKNILL 58 P EI ++L+ Y+IGQ AK+ +++A+ N ++R ++L D E+ NILL Sbjct: 63 PAEIFAQLEDYVIGQNKAKKVLSVAVHNHYKRI-FSSELTDLSSLNQLKDVEIEKTNILL 121 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGPTG GKT +++ +ARL PF + T TE GYVG +VE I+ L+ A Sbjct: 122 VGPTGSGKTLLAKTIARLLDVPFCIADATSLTEAGYVGEDVESILLRLLQNA 173 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 58/218 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EGS + ++ I Sbjct: 183 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKMLEGSVCNVPPQGGRKHPHQEFIRI 242 Query: 292 NTDHILFIASGAFH-----VSR---------------------------PADLL-----P 314 NT++ILFI GAF ++R P DL+ P Sbjct: 243 NTENILFICGGAFIGLDKIIARRRGKQVLGFKQSLEGEDAASEEFTEIEPEDLIAYGMIP 302 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GRFPV L L++ + ILT+ ++ +I QY +L + I L+F +++I A A Sbjct: 303 EFVGRFPVITSLSELSEEELVKILTEPKNAIIKQYVKLFALDHIKLNFAKEAIRFFAQEA 362 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQE 409 + GAR L+ ++E+V+ ++ F S +D++E Sbjct: 363 KKKKT-----GARALKNMIEKVMLEVMFDLPSRTDIEE 395 >gi|296328559|ref|ZP_06871078.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154368|gb|EFG95167.1| ATP-dependent Clp protease ATP-binding subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 423 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LLVGPTG Sbjct: 74 LKPVEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNNGQDDDGVELQKSNVLLVGPTGS 133 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 134 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 61/225 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSR---------------PADLL--- 313 +T +ILFI GAF V + P DL+ Sbjct: 249 DTKNILFIVGGAFEGLEKIIKARTNKKVIGFGAEVQKQDNMGTEGEFFKKVLPEDLMKQG 308 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 309 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVKLEFTQEALTEIA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVV 413 A+ +GAR L+ ++E + DI F S ++++E T+ Sbjct: 369 KRALKRK-----MGARGLRAIIEHTMLDIMFELPSNNNIKEITIT 408 >gi|253579880|ref|ZP_04857148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848879|gb|EES76841.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 472 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVG 65 +P +I LD+Y+IGQ+ AK+ +++A+ N ++R + D DE+ N+L++GPTG G Sbjct: 118 APHKIKETLDQYVIGQEKAKKVMSVAVYNHYKR--VATDTMDEIEIEKSNMLMIGPTGCG 175 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA+L P + T TE GY+G ++E ++ L+ A N V + Sbjct: 176 KTYLVKTLAKLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 229 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 56/227 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++N Sbjct: 229 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEVEVPVGANSKNAMVPLVTVN 288 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 289 TRNILFICGGAFPDLENIIKERLNKQASIGFYADLKDKYDNDPHLLQKVTVEDIRSFGMI 348 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L LN+ IL + ++ ++ QY++L+ + + L+F + ++ A+A Sbjct: 349 PEFIGRLPIIFTLDGLNEDMLVKILQEPKNAILKQYQKLLALDEVKLEFEDGALHAIAAK 408 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ D GAR L+ ++E + DI + D VVI EY+ Sbjct: 409 ALER-----DTGARALRAILEEYMLDIMYEIPKDDSIGEVVITREYI 450 >gi|160871875|ref|ZP_02062007.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella grylli] gi|159120674|gb|EDP46012.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Rickettsiella grylli] Length = 439 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD--ELMPKNILLV 59 P EI + ++IGQ+ AK+ +++A N ++R +L P + +D EL N+LL+ Sbjct: 68 PSEIHEVFNEFVIGQEFAKKILSVAAYNHYKRLELIKKARLHPLNTKDDTELSKSNVLLI 127 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LAR+ PF + T TE GYVG +VE I++ L+ A Sbjct: 128 GPTGSGKTLLAKTLARVFNLPFAIADATTLTEAGYVGDDVENILQKLLQAA 178 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI R I VS EGVQ+ LL L+EG+ SV + G I Sbjct: 188 GIIYIDEIDKISRRAENPSITRDVSGEGVQQGLLKLLEGTVASVPLQGGRKHPNQETVQI 247 Query: 292 NTDHILFIASGAFH--------------VSRPAD-------------------------- 311 +T +ILFI G F + AD Sbjct: 248 DTTNILFICGGTFSGLEKIIRERTEKTGIGFSADVRSKKDKKSLTTLLSRLDSEDLIKYG 307 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR PV L+ L++S IL + ++ LI QY +L K + + L+F ED++ +A Sbjct: 308 IIPELIGRLPVIATLEELDESMLIQILKEPKNALIKQYFKLFKMDNVDLEFREDALQMVA 367 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ ++E VL D + +Q +VI+A V Sbjct: 368 RKALARKT-----GARGLRAILESVLLDTMYELPSMQNVNKIVIEASTV 411 >gi|317129829|ref|YP_004096111.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Bacillus cellulosilyticus DSM 2522] gi|315474777|gb|ADU31380.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Bacillus cellulosilyticus DSM 2522] Length = 423 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P+EI L+ Y+IGQ AK+ +++A+ N ++R + EL NI L+GPTG GKT Sbjct: 64 PQEIREILNDYVIGQDQAKKTLSVAVYNHYKRVNSTKKNDEVELAKSNICLIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 +++ LAR+ PF + T TE GYVG +VE I+ L+ A V ++ R Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAER 175 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 63/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313 +T ++LF+ GAF ++S+ P DLL Sbjct: 236 DTTNVLFVVGGAFDGIEQIIKRRLGKKVIGFGSETTSEDLKEGQYLSKILPEDLLRYGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L+++ ILT ++ L+ QYK+L++ + + L+F++D++ +A Sbjct: 296 PEFIGRLPVISSLEPLDEAALVEILTKPKNALVKQYKKLLELDDVELEFSDDALKEVAKQ 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----VVIDAEYVRLH 422 A+ + GAR L++++E ++ D+ + DL +T +I E V+ H Sbjct: 356 AIERKT-----GARGLRSIIEGIMLDVMY---DLPSRTDIAKCIITDESVKGH 400 >gi|189499644|ref|YP_001959114.1| ATP-dependent protease ATP-binding subunit ClpX [Chlorobium phaeobacteroides BS1] gi|238692274|sp|B3ENA3|CLPX_CHLPB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189495085|gb|ACE03633.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Chlorobium phaeobacteroides BS1] Length = 437 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPT 62 +P+ I+ L +Y+IGQ+ A++++++A+ N ++R + +RD+ + NILL+GPT Sbjct: 79 LNPKSIMESLGQYVIGQERARKSLSVAVYNHYKRIESQEWVRDDDDVVIEKSNILLIGPT 138 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LA L PF V+ T TE GYVG +VE I+ L+ + Sbjct: 139 GTGKTLLAQTLANLLEVPFTIVDATSLTEAGYVGDDVETILARLLQAS 186 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 63/228 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI AR S N + ++R EGVQ+ LL ++EG+ V + Sbjct: 196 GIIYVDEIDKI-ARKSAN-VSITRDVSGEGVQQALLKILEGAVVGVPPRGGRKHPEQQLI 253 Query: 290 SINTDHILFIASGAFH---------VSRPA------------------------------ 310 ++NT +ILFI GAF V++ + Sbjct: 254 NVNTRNILFICGGAFEGLDKIIGRRVAKASIGFGTAVKAQQLESDPEILKEVSQDDMHEY 313 Query: 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV L L+ R IL + ++ LI QY++L + E L F + ++D++ Sbjct: 314 GLIPEFIGRLPVISTLDPLDSKALRNILVEPKNALIKQYQKLFEMEECELVFEDKALDSV 373 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDA 416 ++A++ + GAR L++V+E ++ DI F + K V+ +A Sbjct: 374 VEIAIDRGT-----GARALRSVLEGIMIDIMFELPSMSGVRKCVITEA 416 >gi|296394281|ref|YP_003659165.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Segniliparus rotundus DSM 44985] gi|296181428|gb|ADG98334.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Segniliparus rotundus DSM 44985] Length = 426 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 10/110 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL---PADLRD-----ELMPKNILLVG 60 P EI L+ Y++GQ AKR +A+A+ N ++R Q P RD EL NIL++G Sbjct: 64 PAEIREFLESYVVGQDPAKRTLAVAVYNHYKRIQAGDKPG--RDGKASVELAKSNILMLG 121 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 PTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAA 171 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 62/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 181 GIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQI 240 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T ++LFI +GAF V + P DL+ Sbjct: 241 DTTNVLFIVAGAFAGLEKIIGERVGKRGLGFGAQIRTREDVETRDYFAEVMPEDLIKFGL 300 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV + +L+K ILT+ ++ L+ QY+ L + + + L+F++++++A+AD Sbjct: 301 IPEFIGRLPVIASVANLDKEALVTILTEPKNALVKQYQRLFEMDNVELEFSKEAVEAVAD 360 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHI 423 A+ L T GAR L+ +ME VL + + S D+ + VVI E VR ++ Sbjct: 361 QAL-LRGT----GARGLRAIMEEVLLPVMYDIPSRDDVAK--VVITEETVRENV 407 >gi|33151466|ref|NP_872819.1| ATP-dependent protease ATP-binding subunit [Haemophilus ducreyi 35000HP] gi|46576468|sp|Q7VP79|CLPX_HAEDU RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33147686|gb|AAP95208.1| ATP-dependent Clp protease, ATP-binding ClpX subunit [Haemophilus ducreyi 35000HP] Length = 418 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 17/111 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-----------ELMPKNI 56 +P +I + LD Y+IGQ+ AK+ +++A+ N ++R LR+ EL NI Sbjct: 65 TPHQIHAHLDDYVIGQEHAKKVLSVAVYNHYKR------LRNALSHHQETNGVELGKSNI 118 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 LL+GPTG GKT ++ LAR PF + T T+ GYVG +VE +I+ L+ Sbjct: 119 LLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGEDVENVIQKLL 169 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 59/218 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GI+F+DE DKI + I VS EGVQ+ LL L+EG+ + GS + Sbjct: 182 GIIFIDEIDKITRKSESPSITRDVSGEGVQQALLKLIEGTVANINPQGSRKHPKGETIAV 241 Query: 292 NTDHILFIASGAF-----------HVS-------------------------RPADL--- 312 +T ILFI GAF H P DL Sbjct: 242 DTSKILFICGGAFAGLDKVVEARTHTQSGIGFAAELKKDKDREDLTSLFKQIEPEDLVKF 301 Query: 313 --LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 +PE+ GR PV L+ L+++ ILT ++ +I QY+ L K EG+ L FT+D++ A+ Sbjct: 302 GLIPELIGRLPVITPLQELDEAALIAILTKPKNAIITQYQALFKMEGVELKFTKDALTAI 361 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 A S V GAR L++++E +L D + L+ Sbjct: 362 AQ-----KSIVRKTGARGLRSIVENLLLDTMYDLPTLK 394 >gi|291460967|ref|ZP_06026140.2| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium periodonticum ATCC 33693] gi|291379762|gb|EFE87280.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fusobacterium periodonticum ATCC 33693] Length = 433 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGV 64 P EI ++LD Y++GQ +AK+ +++A+ N ++R D EL N+LL+GPTG Sbjct: 76 LKPIEIKAKLDEYVVGQDEAKKVLSVAVYNHYKRILNGGQDEDGVELQKSNVLLIGPTGS 135 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LA++ PF + T TE GYVG +VE ++ L+ Sbjct: 136 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 181 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 58/211 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 191 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQVPPEGGRKHPNQELIEI 250 Query: 292 NTDHILFIASGAFH------VSR-----------------------------PADL---- 312 +T +ILFI GAF SR P DL Sbjct: 251 DTKNILFIVGGAFEGLEKVIKSRTNKKVIGFGAEVQKQEMSGAEGEFFKKVLPEDLVKQG 310 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE+ GR PV L +L++ ILT ++ ++ QY++L + EG L+FTE+++ +A Sbjct: 311 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCRLEGAKLEFTEEALTEIA 370 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+ ++E + DI F Sbjct: 371 RRALKRK-----MGARGLRAIIEHTMLDIMF 396 >gi|19553586|ref|NP_601588.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium glutamicum ATCC 13032] gi|62391230|ref|YP_226632.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium glutamicum ATCC 13032] gi|23813853|sp|Q8NN26|CLPX_CORGL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21325158|dbj|BAB99780.1| ATP-dependent protease Clp, ATPase subunit [Corynebacterium glutamicum ATCC 13032] gi|41326570|emb|CAF21052.1| PROBABLE ATP-DEPENDENT PROTEASE (ATP-BINDING SPECIFICITY SUBUNIT) [Corynebacterium glutamicum ATCC 13032] Length = 426 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKNILLVG 60 P EI + LD Y+IGQ AKR +++A+ N ++R + + EL+ NIL++G Sbjct: 66 PSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILMLG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 175 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 58/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ + G + Sbjct: 185 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 244 Query: 292 NTDHILFIASGAF--------------------HVSR---------------PADL---- 312 +T +ILFI +GAF VS P DL Sbjct: 245 DTTNILFIVAGAFSGLEKVIADRNGKKGLGFGVEVSSKKEEANIVDIFKDVLPEDLVKFG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV + +L++ +LT+ ++L+ QY+ L + + +L FT+D+++ +A Sbjct: 305 LIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYRRLFEMDDAVLTFTDDALEEIA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 + A+ + GAR L+ +ME +L I + D Sbjct: 365 NQALERKT-----GARGLRAIMEEILVPIMYDLPD 394 >gi|124021783|ref|YP_001016090.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9303] gi|166214802|sp|A2C5R5|CLPX_PROM3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123962069|gb|ABM76825.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9303] Length = 452 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI + LD+ ++GQ+ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQEIKNFLDKQVVGQEAAKKVLSVAVYNHYKRLAWQGDGQGETDLSATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A V ++R Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEHAQR 201 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 69/231 (29%) Query: 229 DMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SV 284 DMD H GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V Sbjct: 193 DMDVEH-------AQRGIIYVDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANV 245 Query: 285 STKYG---------SINTDHILFIASGAF-----HVSR----------PAD--------- 311 + G I+T ILFI GAF V R P+D Sbjct: 246 PPQGGRKHPYQDCIQIDTSQILFICGGAFIGLEDVVQRRLGRNAIGFMPSDGRGRSRANR 305 Query: 312 --------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 L+PE GR PV L+ L+ ILT+ L+ Q+ Sbjct: 306 DLKASQVLHHLEADDLVRYGLIPEFIGRIPVSAVLEPLDSQALESILTEPRDALVKQFST 365 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 L+ + + L+F D+++A+A A + GAR L+ ++E ++ D+ + Sbjct: 366 LLSMDNVQLEFESDAVEAIAQEAHRRKT-----GARALRGIIEELMLDLMY 411 >gi|15615614|ref|NP_243918.1| ATP-dependent protease ATP-binding subunit ClpX [Bacillus halodurans C-125] gi|20137994|sp|Q9K8F4|CLPX_BACHD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|10175674|dbj|BAB06771.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) [Bacillus halodurans C-125] Length = 424 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKT 67 P EI LD Y+IGQ AK+++++A+ N ++R + EL NI ++GPTG GKT Sbjct: 64 PHEIREILDDYVIGQDLAKKSLSVAVYNHYKRINSMSKSEEVELSKSNICMIGPTGSGKT 123 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 58/224 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG++ S ++ I Sbjct: 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI 235 Query: 292 NTDHILFIASGAF-------------------------------HVSR--PADLL----- 313 +T +ILFI GAF ++S+ P DLL Sbjct: 236 DTTNILFICGGAFDGIEQIIKRRLGKKVIGFGSEVKQDELKPGEYLSKVLPEDLLRFGLI 295 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L++ ILT ++ L+ QYK+L++ + + L+FT++++ +A Sbjct: 296 PEFIGRLPVISSLQPLDEEALIEILTKPKNALVKQYKKLLELDDVNLEFTDEALREIARK 355 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVID 415 A+ + GAR L++++E + D+ F A D E ++ D Sbjct: 356 AIERKT-----GARGLRSIIEGLTLDVMFDLPARDDVETCIIHD 394 >gi|323697669|ref|ZP_08109581.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio sp. ND132] gi|323457601|gb|EGB13466.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio desulfuricans ND132] Length = 418 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62 P+EI LD+Y+IGQ+ AK+ +++A+ N ++R A E+ NILL+GPT Sbjct: 62 LPPQEIKELLDQYVIGQEQAKKILSVAVHNHYKRVFYAAANSGGDDVEIDKSNILLIGPT 121 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 169 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 179 GIIYIDEIDKVARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 238 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF ++ P DL+ Sbjct: 239 DTSNILFILGGAFIGLDKIVQQRKQGSGMGFGAKVEAKKEMGLGELFGMAEPMDLIKFGL 298 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV+ L+ L + D ILT+ ++ LI QY++L + + + L FTE+++ A+A Sbjct: 299 IPEFVGRIPVQTALEELTEEDLVRILTEPKNALIKQYRKLFELDKVELTFTENALTAIAK 358 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+ V+E+ + DI + + + + VI+A V Sbjct: 359 QAIERRT-----GARGLRNVLEKTMLDIMYKLPAMPDVRECVINAAVV 401 >gi|145296354|ref|YP_001139175.1| ATP-dependent protease ATP-binding subunit ClpX [Corynebacterium glutamicum R] gi|166214773|sp|A4QGA7|CLPX_CORGB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|140846274|dbj|BAF55273.1| hypothetical protein [Corynebacterium glutamicum R] Length = 426 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 8/110 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADL--------RDELMPKNILLVG 60 P EI + LD Y+IGQ AKR +++A+ N ++R + + EL+ NIL++G Sbjct: 66 PSEISAFLDTYVIGQDPAKRILSVAVYNHYKRLRASETIGRRRNDEPETELVKSNILMLG 125 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PTG GKT +++ LA+L PF + T TE GYVG +VE I+ L+ A Sbjct: 126 PTGSGKTFLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 175 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 58/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ + G + Sbjct: 185 GIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDFIQL 244 Query: 292 NTDHILFIASGAF--------------------HVS---------------RPADL---- 312 +T +ILFI +GAF VS RP DL Sbjct: 245 DTTNILFIVAGAFSGLEKVIADRNGKKGLGFGVEVSSKKEEADIVDIFKDVRPEDLVKFG 304 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV + +L++ +LT+ ++L+ QY+ L + + +L FT+D+++ +A Sbjct: 305 LIPEFIGRLPVVATVSNLDQKSLVKVLTEPRNSLVKQYQRLFEMDDAVLTFTDDALEEIA 364 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + A+ + GAR L+ +ME +L I + D ++ VI Sbjct: 365 NQALERKT-----GARGLRAIMEEILVPIMYDLPDREDVGEVI 402 >gi|317498553|ref|ZP_07956847.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] gi|316894246|gb|EFV16434.1| ATP-dependent Clp protease [Lachnospiraceae bacterium 5_1_63FAA] Length = 461 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+++V +Q +N +GIVF+DE DKI + + N VS E VQ+ LL L+EG+ Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265 Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312 V G +INT +ILFI GAF + ADL Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDRF 325 Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 +PE GR P+ L+ L K IL + ++ ++ QY++L Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411 ++ + + L+F E +++A+A+ A+ + GAR L+ ++E+ + DI + D + Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440 Query: 412 VVIDAEYVRLH 422 V I +Y+ H Sbjct: 441 VTITRDYIENH 451 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD Y+IGQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G +VE ++ L+ A N V + V Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230 Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 +D + + K +N+R+V + ++ G + E+++ V TS + Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277 >gi|296118753|ref|ZP_06837329.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium ammoniagenes DSM 20306] gi|295968242|gb|EFG81491.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium ammoniagenes DSM 20306] Length = 431 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 16/126 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLRDELMP 53 P EI S LD+Y+IGQ AKR +++A+ N ++R + AD E+ Sbjct: 65 PSEISSFLDKYVIGQDAAKRVLSVAVYNHYKRIKAEESQAAAASSSRKSAKADEEVEISK 124 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-IN 112 NIL++GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A + Sbjct: 125 SNILMLGPTGSGKTYLAQTLARMLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFD 184 Query: 113 IVRESR 118 + R SR Sbjct: 185 VDRASR 190 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 191 GIIYVDEVDKISRKSDNPSITRDVSGEGVQQALLKILEGTVASIPPQGGRKHPNQEFIQL 250 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 251 DTSNILFIVAGAFAGLEKVIAERVGKKGVGFGSKLDTQEERERVDMFEKVRPEDLVKFGL 310 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV +++L++ +LT+ +++L+ QY+ L + +G LD +++ +AD Sbjct: 311 IPEFIGRLPVVATVENLDQDSLVKVLTEPKNSLVKQYQRLFEMDGAHLDIEPGALNEIAD 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A+ + GAR L+ ++E +L + + D + TV + AE VR Sbjct: 371 LALERKT-----GARGLRAILEELLVPVMYDLPDRDDIDTVRLTAEAVR 414 >gi|119025607|ref|YP_909452.1| ATP-dependent protease ATP-binding subunit ClpX [Bifidobacterium adolescentis ATCC 15703] gi|118765191|dbj|BAF39370.1| ATP-dependent specificity component of the Clp protease [Bifidobacterium adolescentis ATCC 15703] Length = 473 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278 D++TV + IQ + GIV++DE DKI AR SG ++R EGVQ+ LL + Sbjct: 207 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 265 Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------- 304 +EG+ S I+T ILFI GAF Sbjct: 266 LEGTVASVPVEGTRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAVWH 325 Query: 305 -----------HVSRP--AD--LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 VS AD LLPE GR PV L+ L + D IL + E+ L+ QY Sbjct: 326 DHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 385 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++L +G+ L FTE +I +A ++ + GAR L++++E+ LED F Sbjct: 386 QKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 433 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 21/121 (17%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49 P +I + LD ++IGQ+ AK+ +++A+ N ++R + ++R+ Sbjct: 101 PAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNM--EMRESSRIGKERMHGHDDSFEGV 158 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++ NILL+GPTGVGKT +++ LA + PF+ + T TE GYVG +VE +++ L+ Sbjct: 159 QVAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 218 Query: 110 A 110 A Sbjct: 219 A 219 >gi|154487069|ref|ZP_02028476.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis L2-32] gi|154084932|gb|EDN83977.1| hypothetical protein BIFADO_00907 [Bifidobacterium adolescentis L2-32] Length = 437 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 65/233 (27%) Query: 229 DMDTVHRDSIQMVE------NYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPL 278 D++TV + IQ + GIV++DE DKI AR SG ++R EGVQ+ LL + Sbjct: 171 DVETVLQRLIQAADGDVARAQQGIVYIDEIDKI-ARKSGENTSITRDVSGEGVQQALLKI 229 Query: 279 VEGSSVSTKYGS-----------INTDHILFIASGAF----------------------- 304 +EG+ S I+T ILFI GAF Sbjct: 230 LEGTVASVPVEGTRKHREMETVQIDTRDILFICGGAFVGLADIVAQRLGARESGFGAAWH 289 Query: 305 -----------HVSRP--AD--LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 VS AD LLPE GR PV L+ L + D IL + E+ L+ QY Sbjct: 290 DHEVPKRELLAQVSADDLADFGLLPEFIGRLPVVSVLEELTEDDLARILVEPENALVKQY 349 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++L +G+ L FTE +I +A ++ + GAR L++++E+ LED F Sbjct: 350 QKLFAVDGVTLTFTEGAIRQIAATSIRRGT-----GARGLRSIIEKTLEDTMF 397 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 21/121 (17%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------- 49 P +I + LD ++IGQ+ AK+ +++A+ N ++R + ++R+ Sbjct: 65 PAQISAYLDNHVIGQESAKKTLSVAVYNHYKRVNM--EMRESSRIGKERMHGHDDSFEGV 122 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 ++ NILL+GPTGVGKT +++ LA + PF+ + T TE GYVG +VE +++ L+ Sbjct: 123 QVAKSNILLLGPTGVGKTYLAQTLAHVMNVPFVIADATTLTEAGYVGDDVETVLQRLIQA 182 Query: 110 A 110 A Sbjct: 183 A 183 >gi|61211758|sp|Q607D1|CLPX3_METCA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX 3 Length = 435 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 66/236 (27%) Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------- 289 +GIV++DE DK+ + N +S EGVQ+ LL VEGS V Sbjct: 182 EWGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGE 241 Query: 290 --SINTDHILFIASGAF-----HVSR-------------------------------PAD 311 +I+T +ILFIA GAF HV + P D Sbjct: 242 EVTIDTRNILFIAGGAFPGLERHVEKRIGPPRGEIGFHAPVQDAKRPLLEELLAEIQPED 301 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GRFPV L+ L+++ F ILT+ L+ QY++L EG+ L FTE + Sbjct: 302 LRRFGLIPEFIGRFPVIAPLEPLDEAAFVRILTEPRDALVRQYQKLFAYEGVELVFTEPA 361 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 I +A + D GAR L++++E +L F S SD+++ V+DA+ V Sbjct: 362 IRRIAARTIER-----DTGARGLRSIIEHILRRPMFEIPSQSDVRQ--CVVDADTV 410 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59 P +I LD+Y+IGQ+ AK +++A+ N ++R + +D ++ NIL++ Sbjct: 64 PEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILMI 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT ++ LAR+ G PF+ + T T+ GYVG +VE I+ L++ A Sbjct: 124 GPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAA 174 >gi|319956958|ref|YP_004168221.1| sigma 54 interacting domain protein [Nitratifractor salsuginis DSM 16511] gi|319419362|gb|ADV46472.1| Sigma 54 interacting domain protein [Nitratifractor salsuginis DSM 16511] Length = 405 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 +P+E+ LD Y+IGQ++AK+ +++A+ N ++R L + D E+ NILL+GPTG Sbjct: 57 LTPKELKHFLDEYVIGQEEAKKTLSVAVYNHYKR--LFKHIEDDDTEISKSNILLIGPTG 114 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR P + T TE GYVG +VE I+ L+ A Sbjct: 115 SGKTLLAQSIARFLDVPIAIADATNLTEAGYVGEDVENILTKLLMAA 161 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 171 GIVFIDEIDKIARLGENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 230 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T +ILFI GAF P DL +P Sbjct: 231 DTSNILFICGGAFDGLNEMIKRRLGGNIMGFGQKQHSKNEEENLLRFVEPDDLVNYGLIP 290 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + D ILT+ ++ L+ QY++L + +G+ L F ++++ +A A Sbjct: 291 ELIGRLHVIATLNPITVEDMVRILTEPKNALVKQYQKLFELDGVQLTFQPEALEKIAQKA 350 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E +L DI + +L+ VVI + V Sbjct: 351 IERKT-----GARGLRSILEEILLDIMYELPELEGYEVVITPDVV 390 >gi|317473075|ref|ZP_07932374.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA] gi|316899413|gb|EFV21428.1| ATP-dependent Clp protease [Anaerostipes sp. 3_2_56FAA] Length = 339 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+++V +Q +N +GI+F+DE DKI + + N VS E VQ+ LL L+EG+ Sbjct: 84 DVESVLSKLLQAADNDVDEAEHGIIFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 143 Query: 283 SVSTKYG-----------SINTDHILFIASGA-------------------FHVS----- 307 V G +INT +ILFI GA FH Sbjct: 144 EVEVPVGATSKNAMVPMTTINTKNILFICGGAFPDLDEIIKKRLMKQTSIGFHADLKDKF 203 Query: 308 ---------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 R ++PE GR P+ L+ L+K IL + ++ ++ QY++L Sbjct: 204 DKDENILSRVTVDDLREYGMIPEFLGRLPMVFTLEGLSKDMLVRILKEPKNAILKQYQKL 263 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411 ++ + + L F E +++A+A+ A+ + GAR L+ ++E+ + DI F D Sbjct: 264 LELDEVELIFDESALEAIAEKALEKKT-----GARALRAIIEKFMLDIMFEIPKDDTIGR 318 Query: 412 VVIDAEYVRLH 422 V+I+ +Y+ H Sbjct: 319 VIINRDYILNH 329 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 12/163 (7%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 LD Y+IGQ AK+ +++A+ N ++R E+ N+L+VGPTG GKT + + LAR Sbjct: 2 LDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMEEIEIDKSNMLMVGPTGSGKTYLVKTLAR 61 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135 L P + T TE GY+G +VE ++ L+ A N V E+ E I +E + Sbjct: 62 LLQVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDEA------EHGIIFIDE--I 113 Query: 136 DALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 D + K +N+R+V + ++ G + E+++ V TS + Sbjct: 114 DK-IAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 155 >gi|297792267|ref|XP_002864018.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp. lyrata] gi|297309853|gb|EFH40277.1| hypothetical protein ARALYDRAFT_495043 [Arabidopsis lyrata subsp. lyrata] Length = 605 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 18/130 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRDE----- 50 +P+EI LD ++IGQ+ AK+ +++A+ N ++R + D+ DE Sbjct: 198 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGFVSRSDNLDMEDENIDHV 257 Query: 51 -LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 L N+LL+GPTG GKT +++ LAR+ PF + T T+ GYVG +VE I+ L Sbjct: 258 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVESILYKLYVE 317 Query: 110 AINIVRESRR 119 A V E++R Sbjct: 318 AGCNVEEAQR 327 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 70/240 (29%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI----------- 291 GIV++DE DK+ + S G VS EGVQ+ LL L+EG+ V + Sbjct: 328 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVPIPEKGLRRDPRGDSIQM 387 Query: 292 NTDHILFIASGAF-----HVS-RPAD---------------------------------- 311 +T ILFI GAF VS R D Sbjct: 388 DTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGFSSAAVTSSLLESLQSE 447 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +S L QYK+L + + L FTE Sbjct: 448 DLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLHFTEG 507 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAEYV 419 + +A A++ N+ GAR L++++E +L + F D + E K V++D E V Sbjct: 508 ATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSVTEGSQSIKAVLVDEEAV 562 >gi|291559060|emb|CBL37860.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [butyrate-producing bacterium SSC/2] Length = 461 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+++V +Q +N +GIVF+DE DKI + + N VS E VQ+ LL L+EG+ Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265 Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312 V G +INT +ILFI GAF + ADL Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDRF 325 Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 +PE GR P+ L+ L K IL + ++ ++ QY++L Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411 ++ + + L+F E +++A+A+ A+ + GAR L+ ++E+ + DI + D + Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440 Query: 412 VVIDAEYVRLH 422 V I +Y+ H Sbjct: 441 VTITRDYIENH 451 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD Y+IGQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G +VE ++ L+ A N V + V Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230 Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 +D + + K +N+R+V + ++ G + E+++ V TS + Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277 >gi|167765599|ref|ZP_02437663.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1] gi|167712784|gb|EDS23363.1| hypothetical protein CLOSS21_00093 [Clostridium sp. SS2/1] Length = 461 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 62/251 (24%) Query: 229 DMDTVHRDSIQMVEN------YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS 282 D+++V +Q +N +GIVF+DE DKI + + N VS E VQ+ LL L+EG+ Sbjct: 206 DVESVLSKLLQAADNDVDRAEHGIVFIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGA 265 Query: 283 SVSTKYG-----------SINTDHILFIASGAF---------------HVSRPADL---- 312 V G +INT +ILFI GAF + ADL Sbjct: 266 EVEVPVGATSKNAMVPLTTINTRNILFICGGAFPNLEGIIKKRLMKKTSIGFGADLKDCF 325 Query: 313 --------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 +PE GR P+ L+ L K IL + ++ ++ QY++L Sbjct: 326 DEEENIIAQVTNEDLREYGFIPEFIGRLPMIFTLEGLTKEMLVKILKEPKNAILKQYQKL 385 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKT 411 ++ + + L+F E +++A+A+ A+ + GAR L+ ++E+ + DI + D + Sbjct: 386 LELDEVKLEFDEGALEAIAEQALKKKT-----GARALRAIIEKFMLDIMYEIPKDDTIGS 440 Query: 412 VVIDAEYVRLH 422 V I +Y+ H Sbjct: 441 VTITRDYIENH 451 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 16/173 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I + LD Y+IGQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 116 APHQIKAMLDEYVIGQDYAKKVMSVAVYNHYKRVVTNTMDEIEIDKSNMLMIGPTGSGKT 175 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LARL P + T TE GY+G +VE ++ L+ A N V + V Sbjct: 176 YLVKTLARLLKVPLAITDATSLTEAGYIGDDVESVLSKLLQAADNDVDRAEHGIV----- 230 Query: 128 INAEERILDAL--VGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 +D + + K +N+R+V + ++ G + E+++ V TS + Sbjct: 231 ------FIDEIDKIAKKQNTNSRDVSGESVQQGLLKLLEGAEVEVPVGATSKN 277 >gi|315636711|ref|ZP_07891941.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri JV22] gi|315479026|gb|EFU69729.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri JV22] Length = 276 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P+E+ + LD Y+IGQ+ AK+ +++A+ N ++R ++ D EL N+LL+GPTG G Sbjct: 61 TPQELKNILDEYVIGQERAKKVLSVAVYNHYKRIFRQNEINDDIELNKSNVLLIGPTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ +++ P + T TE GYVG +VE ++ LV A ++++ R Sbjct: 121 KTLLAQTISKYLDVPLAIADATSLTEAGYVGDDVENVVTRLVQAANGDIKKAER 174 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI I VS EGVQ+ LL +VEGS +V K G + Sbjct: 175 GIIFIDEVDKIARMSENRSITRDVSGEGVQQALLKIVEGSVVNVPPKGGRKHPGQDALQV 234 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 235 DTTNILFICGGAF 247 >gi|317153551|ref|YP_004121599.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio aespoeensis Aspo-2] gi|316943802|gb|ADU62853.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfovibrio aespoeensis Aspo-2] Length = 416 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPT 62 P+EI + LD Y+IGQ+ AK+ +++A+ N ++R A E+ NILL+GPT Sbjct: 60 LPPQEIKALLDEYVIGQEQAKKILSVAVHNHYKRVFYAAANTGPDEVEIDKSNILLIGPT 119 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 120 GSGKTLLAQTLARVLKVPFAIADATTLTEAGYVGEDVENILVQLLQNA 167 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 57/215 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYGS---------I 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ ++ K G + Sbjct: 177 GIIYIDEIDKVARKGDSPSITRDVSGEGVQQALLKIIEGTEANIPPKGGRKHPQQEFIRM 236 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADLL---- 313 +T +ILFI GAF ++ P DL+ Sbjct: 237 DTSNILFILGGAFIGLDKIVQQRKQGSGMGFGAKVEAKRETDLGEMMGLAEPMDLIKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P++ L+ L + D IL + ++ LI QY++L + + + L FTE+++ ++A Sbjct: 297 IPEFVGRIPIQTALQDLTEDDLMRILQEPKNALIKQYRKLFELDKVELRFTENALTSIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 A+ + GAR L+ V+E+ + +I + L Sbjct: 357 QAIQRKT-----GARGLRNVLEKSMLEIMYKLPSL 386 >gi|53804066|ref|YP_114267.1| ATP-dependent protease ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] gi|53757827|gb|AAU92118.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Methylococcus capsulatus str. Bath] Length = 444 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 66/236 (27%) Query: 243 NYGIVFLDEFDKIVARD--SGNGIGVSREGVQRDLLPLVEGSSVSTKYG----------- 289 +GIV++DE DK+ + N +S EGVQ+ LL VEGS V Sbjct: 191 EWGIVYIDEVDKLAKSPEMAINTRDISGEGVQQALLRFVEGSQVKVAARGRRREGSGGGE 250 Query: 290 --SINTDHILFIASGAF-----HVSR-------------------------------PAD 311 +I+T +ILFIA GAF HV + P D Sbjct: 251 EVTIDTRNILFIAGGAFPGLERHVEKRIGPPRGEIGFHAPVQDAKRPLLEELLAEIQPED 310 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GRFPV L+ L+++ F ILT+ L+ QY++L EG+ L FTE + Sbjct: 311 LRRFGLIPEFIGRFPVIAPLEPLDEAAFVRILTEPRDALVRQYQKLFAYEGVELVFTEPA 370 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 I +A + D GAR L++++E +L F S SD+++ V+DA+ V Sbjct: 371 IRRIAARTIER-----DTGARGLRSIIEHILRRPMFEIPSQSDVRQ--CVVDADTV 419 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ---------LPADLRDELMPKNILLV 59 P +I LD+Y+IGQ+ AK +++A+ N ++R + +D ++ NIL++ Sbjct: 73 PEDIKRHLDQYVIGQELAKEILSVAVYNHYKRLRHESREILGLAGSDTEVQVGKSNILMI 132 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT ++ LAR+ G PF+ + T T+ GYVG +VE I+ L++ A Sbjct: 133 GPTGTGKTLLASTLARIVGVPFVVADATTLTQAGYVGDDVENILVRLLEAA 183 >gi|310830518|ref|YP_003965619.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus polymyxa SC2] gi|309249985|gb|ADO59551.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paenibacillus polymyxa SC2] Length = 395 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 7/133 (5%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 P EI ELDR++IGQ +AK+ +++A+ N ++R + + ++ NI++VGPTG G Sbjct: 49 GLKPHEIKEELDRFVIGQDEAKKLLSVAVYNHYKRIHMKTKV--DIQKSNIMIVGPTGSG 106 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----D 120 KT + L+R+ P + + T T+ GYVG +VE I+ L+ A V+++ + D Sbjct: 107 KTYLLETLSRILDVPLVIADATSLTQAGYVGDDVETILEKLIIKAGGDVQKAEQGIVYID 166 Query: 121 EVREQASINAEER 133 E+ + AS + R Sbjct: 167 EIDKIASYEVDGR 179 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 58/233 (24%) Query: 245 GIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGSSVSTKYGS---------IN 292 GIV++DE DKI + + ++ + VQ LL ++EG+ V + G+ +N Sbjct: 161 GIVYIDEIDKIASYEVDGRKRTKDIAGQAVQESLLKMIEGNEVHLQMGNQRLNKQRVILN 220 Query: 293 TDHILFIASGAF------------------HVSRPA-------------------DLLPE 315 T +ILFI GAF + PA +PE Sbjct: 221 TKNILFIFGGAFVGLQDILQSRTKGVTKTVGFTTPAIPTDDIQDQELSQQDLVSYGFIPE 280 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV L L K D IL ++ ++ QY+ L++ +G+ L F +++ +A+ A+ Sbjct: 281 FMGRIPVIAVLNPLRKEDLMSILVKPKNAVLKQYQALLQMDGVKLSFHAKAVEHIAEEAM 340 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLHIGDFP 427 N +GAR L+ ++E+ + D+ +S +E K+++I E + +G+ P Sbjct: 341 KKN-----VGARGLKGIVEKRMYDLMYSLPQKEEIKSLIITKEML---LGEAP 385 >gi|149376711|ref|ZP_01894469.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola DG893] gi|149358950|gb|EDM47416.1| ATP-dependent protease ATP-binding subunit [Marinobacter algicola DG893] Length = 427 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI L+ Y+IGQ AK +++A+ N ++R + + EL NILL+GPTG GK Sbjct: 69 TPAEIRDTLNEYVIGQDRAKVVLSVAVYNHYKRLRYGEGKAEVELGKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 T ++ LAR+ PF + T TE GYVG +VE II+ L+ Sbjct: 129 TLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQKLL 169 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 59/225 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ S ++ + Sbjct: 182 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV 241 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311 +T ++LFI GAF V P D Sbjct: 242 DTGNMLFICGGAFAGLDKVIQERSERSSIGFSALVKSPDDTKNTGDIIKDVETEDLVKYG 301 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ ILT+ ++ L QY++L EG+ LDF ED++ A+A Sbjct: 302 LIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQKLFDMEGVELDFREDALRAVA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVID 415 A+ + GAR L+++ME L D + S+ VVID Sbjct: 362 RKAMERKT-----GARGLRSIMEATLLDTMYQIPSEHDVSKVVID 401 >gi|304440713|ref|ZP_07400597.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370900|gb|EFM24522.1| ATP-dependent Clp protease ATP-binding subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 403 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 61/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ Sbjct: 170 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKIIEGTIANVPPQGGRKHPAQEFIQF 229 Query: 292 NTDHILFIASGAFHVSRPA--------------------------------------DLL 313 NT+++LFI GAF P L+ Sbjct: 230 NTENVLFICGGAFDGLAPIIEHRVGKNSIGFGQTVISETERDKNILSKLHTEDLIKFGLI 289 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE+ GR PV V L+ L++ IL ++ L+ QYKEL+K +G+ L F E+++ +A + Sbjct: 290 PELIGRLPVTVTLEELDEEALVEILKTPKNALVKQYKELLKLDGVDLKFEEEALKYIASM 349 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 A+ S GAR L+ V+E + D+ F S ++QE V+I E V Sbjct: 350 AIKKKS-----GARGLRGVIEDTMMDVMFEIPSQDNIQE--VIITKESVE 392 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 4/111 (3%) Query: 3 LTFNF---SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLV 59 L F+F +P+EI LD Y+I Q+ AK+A+A+A+ N ++R ++ EL NIL++ Sbjct: 51 LDFDFELKTPKEIKEVLDSYVIKQEAAKKALAVAVYNHYKRIHHKSE-EVELQKSNILMI 109 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 110 GPTGSGKTLLAQTLAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAA 160 >gi|119487887|ref|ZP_01621384.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106] gi|119455463|gb|EAW36601.1| ClpX, ATPase regulatory subunit [Lyngbya sp. PCC 8106] Length = 449 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 9/111 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-------ADLRD--ELMPKNILLV 59 P +I LD ++IGQ DAK+ +++A+ N ++R L +L D EL NI+LV Sbjct: 80 PTDIKQYLDDHVIGQHDAKKVLSVAVYNHYKRLSLDRSSLSGNLNLDDGVELQKSNIMLV 139 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA Sbjct: 140 GPTGCGKTLLAQTLAKQLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 190 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 63/223 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ + I Sbjct: 200 GIIYIDEIDKISRKSENTSITRDVSGEGVQQALLKILEGTIVNVPPQGGRKHPYQDFIEI 259 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF P D Sbjct: 260 DTSKILFICGGAFVGLEKVIEQRLGKKSLGFIQSSETANNAAVKSVQRQDELLQYVEPDD 319 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV + L++ ILT+ ++ LI QYK+L+K + + L+F +D+ Sbjct: 320 LVKFGLIPEFVGRIPVVTVISPLDEEALMRILTEPQNALIKQYKKLLKMDNVNLEFEQDA 379 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 + A+A A + GAR L+ ++E ++ D+ + Q+ Sbjct: 380 MIAIAAEAYRRKT-----GARALRGILEELMLDVMYELPSRQD 417 >gi|170591731|ref|XP_001900623.1| ATP-dependent Clp protease ATP-binding subunit clpX [Brugia malayi] gi|158591775|gb|EDP30378.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Brugia malayi] Length = 465 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 50/281 (17%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG L+++ ++++ + + C L+ D+DTV + Sbjct: 171 SNILLMGPSGVGKTYLTQILAEILD--------VPIAMCDCTLLTQSGYVGDDVDTVIQK 222 Query: 237 SIQMVE------NYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTK 287 + + GIVFLDEFDKI + +S + V GVQ+ L LVEG++V K Sbjct: 223 LLANADGDIDATQRGIVFLDEFDKISSSLDLESRSFRDVGGRGVQQAFLKLVEGTAVKVK 282 Query: 288 Y-GS------INTDHILFIASGAFH-----VSR----------------PADLLPEIQGR 319 GS ++T +ILFIASGAF+ +S+ +LPE+ GR Sbjct: 283 QPGSNGTRVDVDTTNILFIASGAFNNLDRIISQRLYKKLVGFGTGKDKEKFGMLPELVGR 342 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 FPV V SL + I+ + +S+++ Q ++ + I L FT+ ++ +A A + Sbjct: 343 FPVLVPFTSLTEELLVRIMKEPKSSIVSQAEKQFLLDNIQLCFTDCALKEIARTAAQKGT 402 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 GAR L+++ E+VL D + +VIDA+ V+ Sbjct: 403 -----GARALRSITEKVLLDAKYDLPGTDIHKLVIDADVVK 438 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%) Query: 31 AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 I+ + R + D ++L NILL+GP+GVGKT +++ LA + P + T T Sbjct: 148 TISFNKKSIRALMEMDKDNDLGKSNILLMGPSGVGKTYLTQILAEILDVPIAMCDCTLLT 207 Query: 91 EIGYVGRNVEQIIRDLV 107 + GYVG +V+ +I+ L+ Sbjct: 208 QSGYVGDDVDTVIQKLL 224 >gi|87123285|ref|ZP_01079136.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. RS9917] gi|86169005|gb|EAQ70261.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. RS9917] Length = 450 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 7/106 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI S LDR ++GQ+ AK+ +++A+ N ++R D E L NILL+GP Sbjct: 84 PQEIKSFLDRQVVGQEAAKKVLSVAVYNHYKRLAWQGDGNGETEQTATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ Sbjct: 144 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLL 189 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 65/239 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF H+ P D Sbjct: 262 DTSQILFICGGAFVGLDDVVQKRLGRNSIGFMPDAGRGRHRANRDLQAAQVLRHLE-PDD 320 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV L+ L++ ILT+ L+ Q++ L+ + + LDF + Sbjct: 321 LVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLDFEAGA 380 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 ++A+A A + GAR L+ ++E ++ D+ + S KT + V H G Sbjct: 381 VEAIAHEAHRRKT-----GARALRGIVEELMLDLMYELPSRKNVKTFTVTRAMVEEHTG 434 >gi|212550899|ref|YP_002309216.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549137|dbj|BAG83805.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 410 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 56/230 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI + I VS EGVQ+ LL L+EGS +V K G + Sbjct: 177 GIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSLVNVPPKGGRKHPEQDMIQV 236 Query: 292 NTDHILFIASGAF-------------------------HVSR--------PADL-----L 313 NT +ILFI GAF + R P DL + Sbjct: 237 NTKNILFICGGAFDGIERKIAQRLSMQVVGYTANENTKKIDRNNLLKYIAPQDLKAFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PEI GR P+ +L+ L+ R ILT +++++ QY +L +G+ L F +++++ + D Sbjct: 297 PEIIGRLPILTYLEPLDCIALRDILTKPKNSIVKQYIKLFAMDGVKLSFDKETLNYIVDK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 ++ +GAR L+++ E ++ D F K + I Y + I Sbjct: 357 SIEFK-----LGARGLRSITENIMIDAMFEIPSTSRKELHITKNYAKERI 401 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP-----ADLRDELMPKNILLVGPTG 63 P++I + LD+Y+I Q AKR +++A+ N ++R P D E+ NILLVG TG Sbjct: 61 PKDIKALLDQYVISQDTAKRYLSVAVYNHYKRLLQPRCTDDDDDDVEIEKSNILLVGATG 120 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +ARL PF V+ T TE GYVG ++E ++ L+ VA Sbjct: 121 TGKTLLAKTIARLLKVPFTIVDATVLTEAGYVGEDIESLLTRLLQVA 167 >gi|257452228|ref|ZP_05617527.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp. 3_1_5R] gi|257465977|ref|ZP_05630288.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium gonidiaformans ATCC 25563] gi|315917133|ref|ZP_07913373.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium gonidiaformans ATCC 25563] gi|317058771|ref|ZP_07923256.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 3_1_5R] gi|313684447|gb|EFS21282.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. 3_1_5R] gi|313691008|gb|EFS27843.1| ATP-dependent Clp protease ATP-binding subunit clpX [Fusobacterium gonidiaformans ATCC 25563] Length = 423 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 9/113 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNIL 57 P EI +LD Y+IGQ+ AK+ +A+A+ N ++R EL N+L Sbjct: 67 LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKSKDNDEVELQKSNVL 126 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L+GPTG GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 127 LIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAA 179 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 189 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKHPNQPLIEI 248 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311 +T +ILFI GAF + P + Sbjct: 249 DTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAPKEQVGEGEFLSQVLPEDITKRG 308 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR P+ +L+ L++ F ILT ++ ++ QY++L + EG+ L+FTE+++ +A Sbjct: 309 IIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQYQKLFQMEGVELEFTEEALAEVA 368 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422 +A++ IGAR L++++E + ++ + SD + V++ E V H Sbjct: 369 HLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSSIQKVILGKEAVLDH 415 >gi|121997788|ref|YP_001002575.1| ATP-dependent protease ATP-binding subunit ClpX [Halorhodospira halophila SL1] gi|121589193|gb|ABM61773.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Halorhodospira halophila SL1] Length = 417 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 47/198 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGS----SVSTKYGS---INT 293 GIV++DE DK+ ARD GIG ++ EG Q+ LL L+EG S + + GS ++T Sbjct: 193 GIVYIDEIDKLAARD---GIGGEPDLAGEGAQQGLLKLLEGRRLTVSSAGRQGSPVTVDT 249 Query: 294 DHILFIASGAFH------VSRPA----------------------DLLPEIQGRFPVRVH 325 ILFI GAF RP LLPE+ GR PV Sbjct: 250 GQILFICGGAFEGLEALAAQRPGVGFTAAADEPAVPGAAAALQRFGLLPELVGRLPVVET 309 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L+ L ILT+ + L+ QY+ L +G L+ T D ++A+A A + G Sbjct: 310 LQPLATEHLIRILTEPRNALVRQYQVLFARDGCELEITADGLEAVAHRARARGT-----G 364 Query: 386 ARRLQTVMERVLEDISFS 403 AR L+ V+E VL + F+ Sbjct: 365 ARGLRAVLEEVLLEPMFA 382 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 5/102 (4%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGVG 65 PR + LD+Y++GQ+ AK+ +++A+ N ++R L A R E L NILLVGP+G G Sbjct: 81 PRSLRRYLDQYVVGQEQAKKVLSVAVYNHYKR--LVAAARGESVELGKSNILLVGPSGTG 138 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 K+ ++ LAR PF+ V+ T T GY G + E +I L+ Sbjct: 139 KSHLAECLARCVEVPFVTVDATTLTASGYAGDDAEAVIGRLL 180 >gi|317968360|ref|ZP_07969750.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. CB0205] Length = 451 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I + LD ++GQ++AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 85 PQDIKAHLDAQVVGQEEAKKVLSVAVYNHYKRLAWQGDGKGESNETATKLHKSNILLIGP 144 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 145 TGCGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADLDVDQAQR 202 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 63/215 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKLLEGTVANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312 +T ILFI GAF H+ +P DL Sbjct: 263 DTSQILFICGGAFVGLDDVVQRRMGRNAIGFIPEGGRRGRQSKDQQAAQVLRHL-QPDDL 321 Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 +PE GR PV L+ L+ ILT+ L+ Q++ L+ + + L+F ++ Sbjct: 322 VKYGLIPEFIGRMPVNAVLEPLDNHALEAILTEPRDALVKQFQTLLSMDDVRLEFEPGAV 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+A A + GAR L+ ++E ++ D+ + Sbjct: 382 EAIAAEAHRRKT-----GARALRGIVEELMLDLMY 411 >gi|239623321|ref|ZP_04666352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522287|gb|EEQ62153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 474 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 56/231 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + N VS E VQ++LL L+EGS+V GS +NT Sbjct: 242 GIIFIDEIDKIAKKKQTNTRDVSGESVQQELLKLLEGSTVEVPVGSNQKNAMTPMATVNT 301 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 D+ILFI GAF HV+ R ++P Sbjct: 302 DNILFICGGAFPDLEEIIKERLKKKSSMGFGSVLKDTYDNDPDILKHVTNEDLRAFGMIP 361 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV V L+ L + IL + ++ + QY++L+ + + L F +D++ +A+ A Sbjct: 362 EFLGRLPVTVTLQGLTEDMMVRILKEPKNAITKQYEKLLSMDEVKLVFEDDALRWIAEEA 421 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 + GAR L+ ++E + DI + D +VV+ Y+ + G Sbjct: 422 GKRGT-----GARALRAILEEFMLDIMYEIPKDSNIGSVVVTRPYLEKNGG 467 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 9/121 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------PADLRDELMPK-NILL 58 +P I S LD Y+IGQ+ AK+ VA+A+ N ++R L A D ++ K NIL+ Sbjct: 121 APHIIKSRLDEYVIGQEKAKKVVAVAVYNHYKRAFLDNRSAQGDAAPDEDIVIEKSNILM 180 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 +GPTG GKT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 181 IGPTGSGKTYLVKTLARLLDVPLAIADATSLTEAGYIGDDIESVVSKLLAAADNDVERAQ 240 Query: 119 R 119 R Sbjct: 241 R 241 >gi|325104588|ref|YP_004274242.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter saltans DSM 12145] gi|324973436|gb|ADY52420.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Pedobacter saltans DSM 12145] Length = 413 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 60/230 (26%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGSSVST-----------KYGS 290 GIV++DE DK VAR S N VS EGVQ+ LL ++EG+ V+ K Sbjct: 176 GIVYIDEVDK-VARKSDNPSITRDVSGEGVQQALLKILEGTIVNVPPQGGRKHPDQKMIP 234 Query: 291 INTDHILFIASGAF---------------------------------HVSRPADL----- 312 +NT++ILFI GAF P DL Sbjct: 235 VNTNNILFICGGAFDGIEKKIANRLRTQTVGYKFAKENDDIDINNLYKYITPQDLKSFGL 294 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV +L L++ ILT+ +++LI QY++L + E I L+F+++ + + D Sbjct: 295 IPELIGRVPVLTYLNPLDRETLLNILTEPKNSLIKQYQKLFEFEDIALEFSKEVYEFIVD 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT--VVIDAEYVR 420 A+ +GAR L+++ E ++ D F ++K+ + ID +Y + Sbjct: 355 KALEFK-----LGARGLRSICEAIMIDAMFEIPSEKQKSKKLTIDLDYAK 399 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 3/106 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 P EI LD+Y+IGQ AK+ +++A+ N ++R Q++ D E+ NI++VG TG Sbjct: 62 LKPLEIKRHLDQYVIGQDSAKKVLSVAVYNHYKRLNQKVGKD-EVEIEKSNIMMVGETGT 120 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 GKTLLAKTIAKILNVPFCICDATVLTEAGYVGEDVESILTRLLQAA 166 >gi|94498300|ref|ZP_01304860.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58] gi|94422302|gb|EAT07343.1| ATP-dependent protease ATP-binding subunit [Sphingomonas sp. SKA58] Length = 294 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG++ S ++ + Sbjct: 51 GIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQV 110 Query: 292 NTDHILFIASGAF--------------------HVSRPAD-------------------L 312 +T +ILFI GAF HV+ P + L Sbjct: 111 DTTNILFICGGAFAGLEKIIGDRLEAKSIGFGAHVAAPEERKTGELLRQSEPEDLLKFGL 170 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+ S IL + ++ L+ QY +L E + L FT+D++ A+A Sbjct: 171 IPEFVGRLPVIATLEDLDVSALVKILVEPKNALVKQYAKLFDMENVELSFTDDALTAIAK 230 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E +L D F ++ VV+D + V Sbjct: 231 KAIERKT-----GARGLRSILEGILLDTMFDLPSMEGVGEVVVDKDVV 273 >gi|297739450|emb|CBI29632.3| unnamed protein product [Vitis vinifera] Length = 545 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49 +P+EI LD ++IGQ+ AK+ +++A+ N ++R + A++ + Sbjct: 127 TPKEICKGLDEFVIGQEQAKKVLSVAVYNHYKRIHHASLQKESGAESTKAEIDNDDNDSV 186 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR+ PF+ + T T+ YVG +VE I+ L+ V Sbjct: 187 ELEKSNVLLLGPTGSGKTLLAKTLARVVNVPFVIADATTLTQASYVGEDVESILHKLLMV 246 Query: 110 A 110 A Sbjct: 247 A 247 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 64/234 (27%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI A G VS EGVQ+ LL ++EG+ +V K G I Sbjct: 257 GIVYIDEVDKITKKAESLNTGRDVSGEGVQQALLKMLEGTIVNVPDKGGRKHPRGDNIQI 316 Query: 292 NTDHILFIASGA------------------FHVSRPAD---------------------- 311 +T ILFI GA F A+ Sbjct: 317 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGLTDAVVTSSLLESVESG 376 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +LT+ ++ L QYK+++ + L FTE+ Sbjct: 377 DLIAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGKQYKKMLSMNNVKLHFTEN 436 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ +A A+ N+ GAR L+ ++E++L + F D++ T ++DA V Sbjct: 437 ALRLIAKKAIAKNT-----GARSLRAILEKILTEAMFEIPDVKTGTDMVDAVLV 485 >gi|255994400|ref|ZP_05427535.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium saphenum ATCC 49989] gi|255993113|gb|EEU03202.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium saphenum ATCC 49989] Length = 427 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 3/106 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTGV 64 +PREI + L Y++GQ+ A++ +A+A+ N ++R Q D E+ N++++GPTG Sbjct: 67 TPREIDAILGDYVVGQERARKVLAVAVYNHYKRIQKDKKAEDKTVEVQKSNVIMIGPTGS 126 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 127 GKTLLAETLAKILKVPFAIADATTLTEAGYVGDDVENILLRLIQAA 172 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 105/223 (47%), Gaps = 60/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI I VS EGVQ+ LL ++EG+ +V G Sbjct: 182 GIIYIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGTVANVPQTGGRKHPGQEMIPF 241 Query: 292 NTDHILFIASGAF------------------HVS----------------RPADLL---- 313 NT +LFI GAF + S R DLL Sbjct: 242 NTSDVLFICGGAFDGLDKIIKRRQGGSAIGFNASDTKEENAYLENLYADLRHEDLLHYGL 301 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV+V L L+++D ILT+ ++ L+ QY++L K +G+ L F ++ +A Sbjct: 302 IPEFIGRVPVKVSLDKLSETDLVKILTEPKNALVKQYEKLFKMDGVKLVFENSALIEIAR 361 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTV 412 A++ N+ GAR L+++ME L D F SA ++++ TV Sbjct: 362 EAISRNT-----GARGLRSIMEEALSDAMFEIPSAKNIEKCTV 399 >gi|254444637|ref|ZP_05058113.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Verrucomicrobiae bacterium DG1235] gi|198258945|gb|EDY83253.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Verrucomicrobiae bacterium DG1235] Length = 429 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 21/130 (16%) Query: 2 KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------- 43 K FN P EI + LD+++IGQ+ AK+ +++A+ N ++R Sbjct: 51 KPDFNLVKPTEIKAVLDQHVIGQEHAKKVLSVAVYNHYKRLGFEVAKPSDGESKEEAVLA 110 Query: 44 --PADLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 P++ D E+ NILLVGPTG GKT ++R LAR+ PF + T TE GYVG +VE Sbjct: 111 APPSEYADVEVEKSNILLVGPTGSGKTFLARNLARILDVPFAIADATTLTEAGYVGDDVE 170 Query: 101 QIIRDLVDVA 110 I+ L+ A Sbjct: 171 NIVLRLLQSA 180 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 55/212 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ + +Y + Sbjct: 190 GIIYVDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPNQEYIQV 249 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI GAF +P DL +P Sbjct: 250 DTSKILFICGGAFVGLESIIQKRSGGGTLGFGSDTKEELTGEQIMKNVQPEDLVKFGMIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L D IL T++++I QY +L +G+ L T ++ A+A+ A Sbjct: 310 EFIGRLPVVSVLEMLTVGDLENILLSTKNSIIKQYAKLFSIDGVKLTLTSGAVKAIAEKA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 + L + GAR L+++ME + ++ + D Sbjct: 370 IELQT-----GARALRSIMENLTLEMMYEVPD 396 >gi|317050718|ref|YP_004111834.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurispirillum indicum S5] gi|316945802|gb|ADU65278.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Desulfurispirillum indicum S5] Length = 429 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------ELMPKNILLVGPT 62 P EI LD Y+IGQ+ +K+ +++A+ N ++R D R E+ NILL+GPT Sbjct: 73 PSEIKESLDEYVIGQERSKKILSVAVYNHYKRIYSLLDSRGAEGEDVEISKSNILLIGPT 132 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 G GKT +++ LAR+ PF + T TE GYVG +VE I+ L+ Sbjct: 133 GSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKLL 177 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 59/230 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL +VEG+ +V K G I Sbjct: 190 GIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKIVEGTVANVPPKGGRKHPNQEFIQI 249 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PAD-----L 312 +T +ILFI GAF V R P D L Sbjct: 250 DTTNILFICGGAFEGLDGIVGRRLGKKMLGFGQELSENRKLQKDELLAKVHPEDIIRYGL 309 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE+ GR PV L+ LN++ IL + ++ L+ QY ++ + L FT ++ +A Sbjct: 310 IPELVGRLPVIAALEELNEAALIQILQEPKNALVKQYAHMLAMDSTELVFTPEACTEVAR 369 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ--EKTVVIDAEYVR 420 A+ + GAR L+++ME+V+ DI + D + K +IDAE V+ Sbjct: 370 EALKRKT-----GARGLRSIMEQVMLDIMYDIPDQKGDRKRCIIDAEVVQ 414 >gi|195498060|ref|XP_002096364.1| GE25106 [Drosophila yakuba] gi|194182465|gb|EDW96076.1| GE25106 [Drosophila yakuba] Length = 672 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 622 HITADYVK 629 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382 Query: 109 VAINIVR 115 N+ R Sbjct: 383 ANYNVER 389 >gi|257463898|ref|ZP_05628284.1| ATP-dependent protease ATP-binding subunit ClpX [Fusobacterium sp. D12] gi|317061427|ref|ZP_07925912.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12] gi|313687103|gb|EFS23938.1| ATP-dependent protease ATP-binding subunit [Fusobacterium sp. D12] Length = 430 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 9/113 (7%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNIL 57 P EI +LD Y+IGQ+ AK+ +A+A+ N ++R EL N+L Sbjct: 74 LKPEEIKEKLDDYVIGQERAKKILAVAVYNHYKRLLYKEKQEKKKGKDNNEVELQKSNVL 133 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L+GPTG GKT +++ LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 134 LIGPTGSGKTLLAQTLARILKVPFAIADATTLTEAGYVGDDVENVLVRLIQAA 186 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DEFDKI + I VS EGVQ+ LL ++EG S V + G I Sbjct: 196 GIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTLSQVPPEGGRKHPNQPLIEI 255 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------- 311 +T +ILFI GAF + P + Sbjct: 256 DTSNILFIVGGAFEGLGKVIQGRLHKKTLGFGADIQAPKEQMREGEFLSQVLPEDITKRG 315 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR P+ +L+ L++ F ILT ++ ++ QY++L + EG+ L+FTE++++ +A Sbjct: 316 IIPELVGRLPIIANLEDLDEKAFINILTKPKNAIVKQYQKLFQMEGVELEFTEEALEEVA 375 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLH 422 +A++ IGAR L++++E + ++ + SD + V++ + V H Sbjct: 376 HLAMSRK-----IGARGLRSILENTMLEMMYRLPSDSSIQKVILGKDAVLDH 422 >gi|225027522|ref|ZP_03716714.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353] gi|224955161|gb|EEG36370.1| hypothetical protein EUBHAL_01778 [Eubacterium hallii DSM 3353] Length = 538 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 66/111 (59%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P +I ++LD Y+IGQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 174 APHQIKAQLDEYVIGQDYAKKVMSVAVYNHYKRVITNTMDEIEIDKSNMLMIGPTGSGKT 233 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 + + LARL P + T TE GY+G +VE ++ L+ A N V ++ Sbjct: 234 HLVKTLARLLNVPLAICDATSLTEAGYIGDDVESVLSKLLANADNDVEKAE 284 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS-----------INT 293 GI+F+DE DKI + + VS E VQ+ LL L+EGS V G+ +NT Sbjct: 286 GIIFIDEIDKIAKKKNTTSRDVSGESVQQALLKLLEGSEVEVPVGASSKNAMVPTAVMNT 345 Query: 294 DHILFIASGAF-------------HVS--------------------------RPADLLP 314 +ILFI GAF H S R ++P Sbjct: 346 RNILFICGGAFPGLEDIIKERMTQHSSIGFHAELKDKYDHEKNMLQYVTVEDIRKFGMIP 405 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L +L K IL + ++ ++ QY++L+ + + L F + ++ A+A+ A Sbjct: 406 EFIGRLPIIFTLNALTKEMLVDILKEPKNAILKQYQKLLALDEVDLQFEDGALTAIAEKA 465 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + D GAR L+ ++E+ + DI + D V I +Y+R Sbjct: 466 ME-----KDTGARALRAIIEKFMLDIMYEIPKDDNIGRVTITEDYIR 507 >gi|332686389|ref|YP_004456163.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus plutonius ATCC 35311] gi|332370398|dbj|BAK21354.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Melissococcus plutonius ATCC 35311] Length = 416 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD--ELMPKNILLVGPTGVG 65 P+EI+ L+ Y+I Q AK+ +++A+ N ++R + D + EL NI L+GPTG G Sbjct: 64 PQEILDALNEYVISQDSAKKTLSVAVYNHYKRVNHIEEDSAENVELQKSNICLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 KTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 168 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 58/222 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 178 GIIYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 237 Query: 292 NTDHILFIASGAF---------------------------------HVSRPADLL----- 313 +T +ILFI GAF H+ P DLL Sbjct: 238 DTTNILFIVGGAFDGIDTIVKNRLGEKTIGFGQNSVVFNEEKSVMQHII-PEDLLKFGLI 296 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV L+ L D ILT ++ L+ QY++L+ + L+F +++ +A+ Sbjct: 297 PEFIGRLPVMAALEKLTTEDLVRILTVPKNALVKQYQKLLSLDDTELEFEPEALRVIANK 356 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414 A+ N+ GAR L++++E ++ D+ F S+ K VVI Sbjct: 357 AIERNT-----GARGLRSIIEDIMMDVMFEIPSNETIKKVVI 393 >gi|301633000|ref|XP_002945567.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, partial [Xenopus (Silurana) tropicalis] Length = 350 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLP--ADLRDELMPKNILLVGPTGVGKTAISRRL 73 LD Y+IGQ AK+ +++A+ N ++R + +D E+ NILL+GPTG GKT +++ L Sbjct: 2 LDDYVIGQDHAKKVLSVAVHNHYKRLEHAGRSDNDVEIAKSNILLIGPTGSGKTLLAQTL 61 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 AR+ PF + T TE GYVG +VE II L+ + V ++R Sbjct: 62 ARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYKVERAQR 107 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 108 GIVYIDEVDKISRKSENPSITRDVSGEGVQQALLKLMEGTIASVPPQGGRKHPQQDFLQV 167 Query: 292 NTDHILFIASGAFH-----VS-----------------------------RPADLL---- 313 +T +ILFI GAF +S P DLL Sbjct: 168 DTTNILFICGGAFSGLEKIISARGKGNSIGFGADVRDPEARGTGEILREVEPEDLLKFGL 227 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L L+ IL+ ++ L+ QY+ L + E L F ED++ A+AD Sbjct: 228 IPEFVGRLPVLATLDDLDVDALMEILSKPKNALVKQYQRLFEIENARLIFQEDALKAIAD 287 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E +L D F Sbjct: 288 KAIKRKT-----GARGLRAIVEGILLDTMF 312 >gi|303287324|ref|XP_003062951.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455587|gb|EEH52890.1| predicted protein [Micromonas pusilla CCMP1545] Length = 371 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 61/221 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DK+ + I VS EGVQ+ LL +VEG V+ ++ + Sbjct: 136 GIVYIDEIDKLTRKAENVAITRDVSGEGVQQALLKMVEGCVVNVPEKGGRKNPRGEFTQV 195 Query: 292 NTDHILFIASGAFH--------------------------VSRPAD-------------- 311 +T +ILF+ GAF V + AD Sbjct: 196 DTTNILFVCGGAFSGLETQVRHRRAESLVGRRPVRPRRRRVPKRADADDALERVEACDFI 255 Query: 312 ---LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 L+PE GRFPV V L+SLN+ + +L + QY+ +MK G+ L+FT+ ++ Sbjct: 256 AYGLIPEFVGRFPVAVPLRSLNEDELVRVLMTPRRAIGRQYQRMMKMLGVELEFTDGAMW 315 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 A A A+ N+ GAR L+T++ER+L D + L E Sbjct: 316 ATARAALRRNT-----GARGLRTLVERLLVDAMYEVPGLAE 351 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------------QQLPADLRD 49 +P+E+V LD +++GQ AK+ +A+A+ N + R P + Sbjct: 6 TPKEMVKMLDEHVVGQTHAKKVLAVAVFNHYSRVRAEAEAASSSSSASSGAASCPTEAAW 65 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 N++L GPTG GKT +++ LA P + + T T+ GYVG +VE ++ L+ Sbjct: 66 PADKSNVVLCGPTGCGKTLLAKTLASFVDVPIVIADATTLTQAGYVGEDVESLLYKLLQE 125 Query: 110 A 110 A Sbjct: 126 A 126 >gi|218197157|gb|EEC79584.1| hypothetical protein OsI_20758 [Oryza sativa Indica Group] Length = 495 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 17/120 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPADLRDE 50 +P+EI LD +++GQ AK+ + +A+ N ++R + D E Sbjct: 48 TPKEIRRGLDEFVVGQDKAKKVLCVAVHNHYKRIYSESSNCSMKSSACGDVSMSGDDDIE 107 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L NILL+GPTG GKT +++ LAR A PF+ + T T+ GY G +VE II +L+ A Sbjct: 108 LEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAAA 167 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%) Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GIV++DE DK++ + N VS EGVQ LL + EG+ S+S Y + Sbjct: 177 GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 236 Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311 NT +ILFI G+F H+ P Sbjct: 237 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 296 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L L+++ +L + ++ + QYK+L K + L FTE+ Sbjct: 297 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 356 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419 ++ +A A + + GAR L+++ME +L + F D +E V++D E V Sbjct: 357 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 410 >gi|218961380|ref|YP_001741155.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Cloacamonas acidaminovorans] gi|167730037|emb|CAO80949.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Cloacamonas acidaminovorans] Length = 415 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 6/114 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTGVG 65 P I + LD+Y+IGQ AK +++A+ N ++R Q+ D+ +L NIL++GPTG G Sbjct: 59 PSRIKAYLDQYVIGQDSAKEIISVAVYNHYKRIFKQKYEDDV--DLEKSNILMIGPTGSG 116 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI-IRDLVDVAINIVRESR 118 KT I++ LAR PF + T TE GYVG +VE I +R L + ++ R R Sbjct: 117 KTLIAQTLARFLQVPFAISDATTLTEAGYVGEDVENILVRLLQNANYDVARAER 170 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 56/228 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + + Sbjct: 171 GIVYIDEIDKISRKSETPSITRDVSGEGVQQALLKILEGTKVNVPPKGGRKHPQQDFIEM 230 Query: 292 NTDHILFIASGAFH--------------------------------VSRPADLL-----P 314 +T +ILFIA GAF + P DLL P Sbjct: 231 DTKNILFIAGGAFFGLEKIIKERMDKKSIGFDVELGKKQDESTIFDFTTPQDLLKYGLIP 290 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L L++ IL ++ + QY++ + +G+ L+F+E+++ +A A Sbjct: 291 ELIGRMPVICTLHELSEDALIDILVKPKNAICKQYQKFFEMDGVRLEFSEEALKEIARTA 350 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRL 421 + + GAR L+++ME+ + I FS D + ++ +I E V L Sbjct: 351 IKQKT-----GARGLRSIMEKFMLKIMFSIPDRSDIESCIITPEVVTL 393 >gi|24648291|ref|NP_732463.1| CG4538, isoform B [Drosophila melanogaster] gi|23171759|gb|AAN13814.1| CG4538, isoform B [Drosophila melanogaster] Length = 673 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 623 HITADYVK 630 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383 Query: 109 VAINIVR 115 N+ R Sbjct: 384 ANYNVER 390 >gi|226942335|ref|YP_002797408.1| ATP-dependent protease ATP-binding subunit ClpX [Azotobacter vinelandii DJ] gi|461755|sp|P33683|CLPX_AZOVI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|142368|gb|AAA64733.1| ORF 9 [Azotobacter vinelandii] gi|226717262|gb|ACO76433.1| Nitrogen fixation protein orf9, ClpX [Azotobacter vinelandii DJ] Length = 440 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GIV++DE DK+ R SG G V S EGVQ+ LL +VEG+ V +K G Sbjct: 177 QWGIVYIDEVDKLAKR-SGGGTAVRDISGEGVQQALLKMVEGTEVRISKSGRRNEHSEEQ 235 Query: 291 -INTDHILFIASGAF--------------------HVSR---------------PADL-- 312 ++T +ILFIA GAF H P DL Sbjct: 236 VVDTRNILFIAGGAFPGLEALVSSRIQPKNTGIGFHAQPRREAPSINELMASLLPDDLHE 295 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFP+ L+ L+ + ILT+ + L+ QYK+L +G+ L T+ +++ Sbjct: 296 FGLIPEFIGRFPIITFLQELDHATLLRILTEPRNALVKQYKQLFAYQGVELVITDAALNY 355 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +AD A+ + GAR L+ V+E L+ F+ Sbjct: 356 IADQAL-----IRKTGARGLRAVLEAALQQTMFN 384 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDELMPKNILL 58 +P E LD +IGQ+ AK +++A+ N + R QL + EL NIL+ Sbjct: 60 TPVEYKKHLDESVIGQEAAKETLSVAVYNHYLRLLNCDREPVCQLGEQV--ELEKSNILM 117 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR 118 GP+G GKT + R LAR+ G PF + T T+ GYVG +V+ II L+D A V++++ Sbjct: 118 AGPSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQAQ 177 >gi|226491966|ref|NP_001147507.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays] gi|195611856|gb|ACG27758.1| ATP-dependent Clp protease ATP-binding subunit clpX [Zea mays] Length = 559 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD+++IGQQ AK+ +++A+ N ++R + AD Sbjct: 140 TPKEICRGLDKFVIGQQRAKKVLSVAVYNHYKRIYCESLINRSAADCSQSDSCTSDTDMV 199 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL NIL++GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ Sbjct: 200 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLL 257 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 64/217 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + G+ I Sbjct: 270 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 329 Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308 +T +ILFI GAF H S Sbjct: 330 DTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESG 389 Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L SL++ +LT+ ++ L QY +L + + L FTE+ Sbjct: 390 DLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEE 449 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ +A A++ N+ GAR L++++E +L + + Sbjct: 450 ALRLIAKRAISKNT-----GARGLRSILESILTEAMY 481 >gi|24648289|ref|NP_650843.1| CG4538, isoform A [Drosophila melanogaster] gi|23171758|gb|AAF55713.2| CG4538, isoform A [Drosophila melanogaster] gi|189182138|gb|ACD81845.1| LD11650p [Drosophila melanogaster] Length = 673 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 623 HITADYVK 630 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383 Query: 109 VAINIVR 115 N+ R Sbjct: 384 ANYNVER 390 >gi|195353554|ref|XP_002043269.1| GM26887 [Drosophila sechellia] gi|194127383|gb|EDW49426.1| GM26887 [Drosophila sechellia] Length = 673 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447 Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311 ++T +ILF+ASGA+ + P D Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 623 HITADYVK 630 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383 Query: 109 VAINIVR 115 N+ R Sbjct: 384 ANYNVER 390 >gi|195569578|ref|XP_002102786.1| GD20094 [Drosophila simulans] gi|194198713|gb|EDX12289.1| GD20094 [Drosophila simulans] Length = 673 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 394 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 447 Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311 ++T +ILF+ASGA+ + P D Sbjct: 448 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 507 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 508 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 567 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 568 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 622 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 623 HITADYVK 630 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 324 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 383 Query: 109 VAINIVR 115 N+ R Sbjct: 384 ANYNVER 390 >gi|315453105|ref|YP_004073375.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter felis ATCC 49179] gi|315132157|emb|CBY82785.1| ATP-dependent clp protease ATP-binding subunit clpX [Helicobacter felis ATCC 49179] Length = 446 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS +VS K G I Sbjct: 208 GIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHPNENFVQI 267 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T +ILFI GAF H+ P DL+ P Sbjct: 268 DTTNILFICGGAFDGIIDIIKRRIHSNVLGFGNEKKTKEQLEDILHLVGPEDLINYGLIP 327 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV LK ++K IL ++ LI QY++L K + + L F ++I+ +A+ A Sbjct: 328 ELIGRLPVISTLKPISKEAMVDILLKPKNALIKQYQQLFKMDDVDLVFEPEAIEEIANQA 387 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + +GAR L++++E D+ F L++ VVI Sbjct: 388 IKRK-----VGARGLRSIIESFSLDVMFDLPSLKDYQVVI 422 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 31/229 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD-----ELM 52 SP + LD Y++GQ++AKR ++A+ N ++R Q++ A + E+ Sbjct: 81 SPNVLKEILDNYVVGQEEAKRVFSVAVYNHYKRLNHQEKQKQRQRIKASENESLDDVEIS 140 Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 NILLVGPTG GKT +++ LAR P + T TE GYVG +VE I+ L+ + Sbjct: 141 KSNILLVGPTGSGKTLMAQTLARFLNIPIAISDATSLTEAGYVGEDVENILTRLLQASDG 200 Query: 113 IVRESRR-----DEVREQASINAEERILDALVGKTATSNTREVFRKKL-----RDGEISD 162 V ++R DE+ + A ++ I + G+ ++ + + G Sbjct: 201 DVERAQRGIVFIDEIDKIARLSENRSITRDVSGEGVQQALLKIIEGSVVNVSPKGGRKHP 260 Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNL--SELFSKVMGSGRKKKIR 209 E +++ DT++ + I GGA GI+++ + S V+G G +KK + Sbjct: 261 NENFVQI-DTTNILF---ICGGAFDGIIDIIKRRIHSNVLGFGNEKKTK 305 >gi|301091465|ref|XP_002895917.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4] gi|262096081|gb|EEY54133.1| ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4] Length = 705 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 61/234 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EGS V+ ++ +I Sbjct: 447 GIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITI 506 Query: 292 NTDHILFIASGAF-----HVSR--------------------------------PADL-- 312 +T +ILFI GAF V+R P DL Sbjct: 507 DTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPNMRLKDSNQIGQLLSQAEPEDLVS 566 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFP+ V L+K + +L + +++L+ QYK L + TE +++A Sbjct: 567 YGLIPEFIGRFPMLVSTTGLSKDELVQVLNEPKNSLVRQYKALFALSDVEFHATEGALEA 626 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 +A+ A+ N+ GAR L+++ ER L + F D+ + + V +D E + H Sbjct: 627 VAESALRKNT-----GARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGH 675 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N++LVGPTG GKT +++ LARLA P + + T T+ GYVG +VE ++ L Sbjct: 377 ELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQA 436 Query: 110 A 110 A Sbjct: 437 A 437 >gi|315641097|ref|ZP_07896176.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus italicus DSM 15952] gi|315483105|gb|EFU73622.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus italicus DSM 15952] Length = 416 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 9/109 (8%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-------ELMPKNILLVGP 61 P+E++ L+ Y+IGQ AK+A+++A+ N ++R + A+L EL NI L+GP Sbjct: 64 PQELLKILNEYVIGQDRAKKALSVAVYNHYKR--ISANLDKSGEEEDVELQKSNICLIGP 121 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 122 TGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQAA 170 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 100/220 (45%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G + Sbjct: 180 GIIYIDEIDKIARKGENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPHQEMIQL 239 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADLL-----P 314 +T +ILFI GAF P DLL P Sbjct: 240 DTTNILFIVGGAFDGIETIVKNRMGEKTIGFGSNNRKLPEKESTMKYIIPEDLLKFGLIP 299 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L D ILT+ ++ L+ QYK+L+ + L F +D++ A+A A Sbjct: 300 EFIGRLPVMAALDKLTVDDLVRILTEPKNALVKQYKKLLSLDETELVFEDDALRAIAQKA 359 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + N+ GAR L++++E ++ DI F +E VI Sbjct: 360 IERNT-----GARGLRSIIEEIMMDIMFEVPSQEEIEKVI 394 >gi|166030630|ref|ZP_02233459.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC 27755] gi|166029632|gb|EDR48389.1| hypothetical protein DORFOR_00296 [Dorea formicigenerans ATCC 27755] Length = 476 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 234 GIIFIDEIDKIAKKKNASQRDVSGESVQQGMLKLLEGSEVEVPVGANSKNAMVPLTTVNT 293 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 294 KNILFICGGAFPDLDSIIKERLTKQSAIGFGADLKDKYDHDKKILEKVTTEDLRNFGMIP 353 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L+ L + + IL + ++ ++ QY++L+ + + LDFTE ++ A+A A Sbjct: 354 EFLGRLPVVFTLQGLTEDMYVKILEEPKNAILKQYQKLLALDEVKLDFTEGALRAIAKKA 413 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 414 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDSIGQVTITQEYI 454 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I + LD Y++GQ+ AK+ +++A+ N ++R + D D E+ N+L++GPTG G Sbjct: 122 APHKIKASLDEYVVGQEYAKKVMSVAVYNHYKR--VATDSMDDIEIEKSNMLMIGPTGSG 179 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LAR+ P + T TE GY+G ++E ++ L+ A N V ++ + Sbjct: 180 KTYLVKTLARILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 233 >gi|295395009|ref|ZP_06805221.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972168|gb|EFG48031.1| ATP-dependent Clp protease ATP-binding subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 419 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 P++I L+ +++GQ AKRA+++A+ N ++R D D E+ NIL+VGPTG G Sbjct: 63 PQDIFDHLNDFVVGQASAKRALSVAVYNHYKRINAMQSGDKPDVEIAKSNILMVGPTGSG 122 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 KTYVAQTLAKKLNVPFAVADATSLTEAGYVGEDVENILLKLLQAA 167 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 177 GIIYIDEIDKISRKAENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQL 236 Query: 292 NTDHILFIASGAF---------------------------HVSR-----PADLL-----P 314 +T ++LFI +GAF +V+ P DLL P Sbjct: 237 DTTNVLFIVAGAFAGLEEIISARKGKHGIGFGALIQSKEDNVNHFEDLLPEDLLKFGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L +L++ ILT+ + L+ QY+ + +G+ L+F ++++A+AD+A Sbjct: 297 EFIGRVPVIATLDNLDREALIAILTEPRNALVKQYQAMFNMDGVELEFEHEALEAIADLA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + + GAR L++++E VL+ I F Sbjct: 357 L-----LRETGARGLRSILEEVLQPIMF 379 >gi|255551247|ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] gi|223544165|gb|EEF45689.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] Length = 565 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 19/127 (14%) Query: 3 LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPA--------DL 47 L NF +P+EI LD+++IGQ AK+ +++A+ N ++R Q+ A + Sbjct: 142 LGNNFPTPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHDSIQKWSAGDSGNNKAEA 201 Query: 48 RDE----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 DE L NILL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ Sbjct: 202 MDEDGVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 261 Query: 104 RDLVDVA 110 L+ A Sbjct: 262 YKLLMAA 268 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 278 GIVYIDEVDKITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 337 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ A Sbjct: 338 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRMGSVTSAAVTSSLLETVESG 397 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +L ++ +LT+ ++ L QYK++ + G+ L FTE+ Sbjct: 398 DLISYGLIPEFVGRFPVLVSLSALTENQLVQVLTEPKNALGKQYKKMFQMNGVRLHFTEN 457 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A+ N+ GAR L+ ++E +L D + D++ +IDA Sbjct: 458 ALRLIAKKAITKNT-----GARGLRAILENILMDAMYEIPDVKTGEDIIDA 503 >gi|254797098|ref|YP_003081936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia risticii str. Illinois] gi|254590291|gb|ACT69653.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia risticii str. Illinois] Length = 400 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR----RQQLPADLRDELMPKNILLVGPT 62 F+P++I D +I Q+DAK+ +++A+ N ++ + D+ E+ NIL++GPT Sbjct: 58 FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGSRSNSKDV--EITKSNILIIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++ LAR PF + T TE GYVG +VE I+R L+ A Sbjct: 116 GCGKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSA 163 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 173 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPNQETVQI 232 Query: 292 NTDHILFIASGAF-------------------------HVS-------RPADL-----LP 314 +T +ILFI GAF VS P DL +P Sbjct: 233 DTTNILFICGGAFVGLDNIIANRRSINTMGFKSELQSKEVSPTILKKVEPEDLVKFGMIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L + + IL+ ++ L+ QY L + I L F+++++ +A A Sbjct: 293 EFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSDEALKTVARAA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGD 425 + +GAR L+ +ME VL + F S+ KT++I + VR + + Sbjct: 353 IKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEMAN 399 >gi|148657763|ref|YP_001277968.1| ATP-dependent protease ATP-binding subunit ClpX [Roseiflexus sp. RS-1] gi|148569873|gb|ABQ92018.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Roseiflexus sp. RS-1] Length = 436 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +PR + LD+Y+IGQ AK +++A+ N ++R + + D E+ NILL+GPTG GK Sbjct: 77 TPRRLREWLDQYVIGQDRAKVVLSVAVYNHYKRLRAGQNADDVEIGKSNILLIGPTGSGK 136 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 137 TLLAQTLARVLDVPFAIADATALTEAGYVGEDVENILLRLIQAA 180 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG +Y S Sbjct: 190 GIIYIDEIDKIARKSDNPSITRDVSGEGVQQALLKILEGCVAHVPPVPGRKHPQQEYISF 249 Query: 292 NTDHILFIASGAF-------------------HVSR----PADLL--------------P 314 +T H+LFI GAF H PA LL P Sbjct: 250 DTTHVLFICGGAFEGLDKIISQRIGGKRSIGFHAGESSDAPASLLSQVTPDDLLRYGFIP 309 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L+K ILT+ + +I QY++++ + + L+ T D+++A+A+ A Sbjct: 310 EFVGRLPVVAALDPLDKQAMIRILTEPRNAIIKQYQKMLALDHVELEVTPDALEAIAERA 369 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + + GAR L+T++E +L D+ + + +I+AE V Sbjct: 370 LRSKT-----GARALRTIVEEILLDVMYEVPSQEHIGRCIINAEVV 410 >gi|329770553|ref|ZP_08261931.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella sanguinis M325] gi|328836302|gb|EGF85971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Gemella sanguinis M325] Length = 403 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPT 62 FN P EI++ L+ Y+I Q AK++VA+A+ N ++R + + +L NI L+G T Sbjct: 58 FNLLKPHEIMTHLNEYVISQDKAKKSVAVAVYNHYKRIKAKQSNENIDLQKSNIALIGST 117 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 118 GSGKTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNA 165 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPGEEMIKI 234 Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315 NT ILFI GAF S+ +L +PE Sbjct: 235 NTKDILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELNDTGAIISKVKHEDLVKFGIIPE 294 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV +L+ LN++D +LT+ ++++I QY+ L + + L F +D++ +A ++ Sbjct: 295 FIGRIPVICYLEELNENDLVRVLTEPKNSVIKQYQYLFSLDNVDLIFEKDALVEIARESI 354 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + GAR L++++E +L D+ + + KT I E V Sbjct: 355 KRKT-----GARGLRSIIEELLLDVMYDIPSKENIKTCTITRENV 394 >gi|194899883|ref|XP_001979487.1| GG15775 [Drosophila erecta] gi|190651190|gb|EDV48445.1| GG15775 [Drosophila erecta] Length = 672 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446 Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311 ++T +ILF+ASGA+ + P D Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 622 HITADYVK 629 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382 Query: 109 VAINIVR 115 N+ R Sbjct: 383 ANYNVER 389 >gi|224132768|ref|XP_002321405.1| predicted protein [Populus trichocarpa] gi|222868401|gb|EEF05532.1| predicted protein [Populus trichocarpa] Length = 403 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRD---- 49 +P+EI LD ++IGQ+ AK+ +++A+ N ++R L +D+ D Sbjct: 12 TPKEICKALDNFVIGQRRAKKVLSVAVYNHYKRIYLESVKKWSNTDSGNEKSDIMDDDGV 71 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ YVG +VE I+ L+ Sbjct: 72 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLTA 131 Query: 110 A 110 A Sbjct: 132 A 132 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 142 GIIYIDEIDKITKKAESVNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 201 Query: 292 NTDHILFIASGAF-----------------------------------------HVSRPA 310 +T ILFI GAF + + Sbjct: 202 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSTAVTSSLLETAESS 261 Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DL +PE GRFP+ V L +L + +LT+ ++ L QYK+L + + L TE+ Sbjct: 262 DLVSYGLIPEFVGRFPILVSLAALTEDQLVQVLTEPKNALGKQYKKLFQMNDVKLHVTEN 321 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++A A+ N+ GAR L++++E +L D + D++ +IDA Sbjct: 322 ALRSIARKAITKNT-----GARALRSILENILMDSMYEIPDVRTGDDIIDA 367 >gi|328955402|ref|YP_004372735.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium glomerans PW2] gi|328455726|gb|AEB06920.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Coriobacterium glomerans PW2] Length = 470 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 24/127 (18%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------QQLPADLR 48 +P E+ L Y++GQ DAKRA+++A+ N +RR Q A R Sbjct: 97 TPHELFEGLSAYVMGQDDAKRALSVAVYNHYRRVLEGGAAEGAHDESDGAAGQDSVAKSR 156 Query: 49 D-----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 EL NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE I+ Sbjct: 157 GGLAEVELAKSNILLLGPTGTGKTLLAQTLARILEVPFALADATALTEAGYVGEDVENIL 216 Query: 104 RDLVDVA 110 L+ A Sbjct: 217 LKLITAA 223 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ SV G I Sbjct: 233 GIIYIDEIDKVARKAENLSITRDVSGEGVQQALLKILEGTLASVPPAGGRKHPQQELLHI 292 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF PADL Sbjct: 293 DTTNILFICGGAFVGLDKIIADRVGNKGIGFNSEIAGPTSIDENDLLRQVLPADLNAFGM 352 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + + D ILT+ + ++ QY+ + + EG L F D++ +A Sbjct: 353 IPEFVGRTPVITETSAFTEDDLVSILTEPRNAIVKQYRRMFELEGCELVFDPDALHEIAR 412 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 +A+ V GAR L+++ E +L+ F S+ V+I VR Sbjct: 413 LAL-----VRKTGARGLRSICENLLQQTMFDLPSEHDVSQVIITGAAVR 456 >gi|223938521|ref|ZP_03630413.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium Ellin514] gi|223892783|gb|EEF59252.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [bacterium Ellin514] Length = 432 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 18/133 (13%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLR 48 FN P +I +LDR+ IGQ AK+ +A+A+ N ++R + L AD Sbjct: 58 FNIPKPIDIKRQLDRHCIGQDHAKKTLAVAVHNHYKRILHEPGAQANETEGAEDLAADRH 117 Query: 49 DE--LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 E + NIL+VGPTG GKT ++R LA++ PF + T TE GYVG +VE II L Sbjct: 118 AEVEIEKSNILMVGPTGSGKTLLARTLAQILDVPFAIADATTLTEAGYVGEDVENIILRL 177 Query: 107 VDVAINIVRESRR 119 + A V+ ++R Sbjct: 178 LQNADYDVKRAQR 190 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 59/212 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + +Y + Sbjct: 191 GIVYIDEIDKIARKTENVSITRDVSGEGVQQALLKILEGTICNVPPQGGRKHPQQEYIRV 250 Query: 292 NTDHILFIASGAF-------------HVS-----------------------RPADLL-- 313 +T HILFI GAF HV P DLL Sbjct: 251 DTSHILFICGGAFVGLEKVIHRRLGKHVMGFNAVEQGHKAASVDRLQILQHIEPEDLLSF 310 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L + ILTD ++ L+ Q+ +L+ EG+ L+F+ED++ L Sbjct: 311 GFIPEFIGRLPMMTVLSELTEDQLVSILTDPKNALVKQFGKLLAMEGVELEFSEDALREL 370 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+ + GAR L+ ++ER++ D+ + Sbjct: 371 SFQALKKGT-----GARALRGLLERIMLDVMY 397 >gi|15292275|gb|AAK93406.1| LD45279p [Drosophila melanogaster] Length = 478 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 199 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 252 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 253 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 312 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 313 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 372 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 373 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 427 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 428 HITADYVK 435 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 129 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 188 Query: 109 VAINIVR 115 N+ R Sbjct: 189 ANYNVER 195 >gi|27374215|gb|AAO00979.1| CG4538-PA [Drosophila erecta] Length = 672 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 393 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 446 Query: 291 ----INTDHILFIASGAF--------------------------------HVSRPAD--- 311 ++T +ILF+ASGA+ + P D Sbjct: 447 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 506 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 507 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 566 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 567 LGLDEVDLTFTEDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 621 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 622 HITADYVK 629 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +A+ PF + T T+ GYVG ++E +I L+ D Sbjct: 323 KLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 382 Query: 109 VAINIVR 115 N+ R Sbjct: 383 ANYNVER 389 >gi|324511044|gb|ADY44609.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein [Ascaris suum] Length = 545 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 71/238 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A + VS EGVQ LL LVEG+ V+ K G Sbjct: 293 GIVFLDEIDKIAAAHNTQSHAYRDVSGEGVQHALLKLVEGTVVNVKSGRKTVATQQDTVQ 352 Query: 291 INTDHILFIASGAFH-----------------------------------VSRPAD---- 311 ++T +LF+ASGAF V+R D Sbjct: 353 VDTSDVLFVASGAFTALDRIVGKRLDQKMLGFGAKSGNQRITADDKMESIVARKRDELLQ 412 Query: 312 -----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++PE+ GRFPV V S +K+ +LT+ ++L+ Q K +G+ L Sbjct: 413 QADQGDLISFGIVPELVGRFPVIVPFHSFDKNMLVRVLTEPANSLLAQMKLQFAIDGVDL 472 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 F++D+++ +A++A+ + GAR L++++E+VL + F SD++ V D Sbjct: 473 SFSQDALEEIAEMALERKT-----GARALRSIVEKVLLEAKFLVPGSDIESVHVTRDC 525 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 38/56 (67%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GP+GVGKT +++ LAR+ P + T T+ GYVG +VE +I+ LV A Sbjct: 228 NILLLGPSGVGKTFVTQTLARILDVPIALCDCTSMTQAGYVGEDVESVIQKLVQNA 283 >gi|240256421|ref|NP_568714.4| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] gi|332008480|gb|AED95863.1| ATP-dependent Clp protease [Arabidopsis thaliana] Length = 608 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 18/130 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD------ 49 +P+EI LD ++IGQ+ AK+ +++A+ N ++R + D+ D Sbjct: 199 TPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNIDHV 258 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LAR+ PF + T T+ YVG +VE I+ L Sbjct: 259 ELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQASYVGEDVESILYKLYVE 318 Query: 110 AINIVRESRR 119 A V E++R Sbjct: 319 AGCNVEEAQR 328 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 72/242 (29%) Query: 245 GIVFLDEFDKIV--ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------------- 289 GIV++DE DK+ + S G VS EGVQ+ LL L+EG+ VS Sbjct: 329 GIVYIDEVDKMTMKSHSSNGGRDVSGEGVQQSLLKLLEGTVVSVPIPEKGLRRDPRGDSI 388 Query: 290 SINTDHILFIASGAF-----------------------------HVSRPA---------- 310 ++T ILFI GAF +S A Sbjct: 389 QMDTKDILFICGGAFIDLEKTVSERQHDASIGFGASVRTNMSTSGLSSAAVTSSLLESLQ 448 Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 L+PE GR P+ V L +LN+ +LT+ +S L QYK+L + + L FT Sbjct: 449 SEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFT 508 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAE 417 E + +A A++ N+ GAR L++++E +L + F D + E K V++D E Sbjct: 509 EGATRLIARKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEE 563 Query: 418 YV 419 V Sbjct: 564 AV 565 >gi|311741279|ref|ZP_07715103.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303449|gb|EFQ79528.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 431 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 14/115 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLPADLRDELMPKN 55 P +I + LD+Y+IGQ AKR +++A+ N + RR++ D E+ N Sbjct: 68 PSQISAFLDKYVIGQDKAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGD-EVEISKSN 126 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 IL++GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 127 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGL 310 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ +++L+ QY L + + LD ++DA+A+ Sbjct: 311 IPEFIGRLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAE 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ + GAR L+ +ME +L + + D ++ TV I E V Sbjct: 371 LALERKT-----GARGLRAIMEELLVPVMYDLPDREDIATVHITRECV 413 >gi|282851695|ref|ZP_06261060.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri 224-1] gi|282557663|gb|EFB63260.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus gasseri 224-1] Length = 357 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGKTA 68 EI +LD Y+IGQ AK+ +++A+ N ++R Q+ D EL NI L+GPTG GKT Sbjct: 2 EIKKQLDEYVIGQDRAKKVLSVAVYNHYKRISQMDIDSSGTELQKSNIALIGPTGSGKTY 61 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 62 LAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNA 103 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 113 GIIYIDEIDKISKKAENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQQMIKI 172 Query: 292 NTDHILFIASGAFH--------------VSRPAD------------------------LL 313 +T +ILFI GAF + A+ L+ Sbjct: 173 DTTNILFIVGGAFDGIENIVKNRLGKKTIGFGAENGLNQVDADDWQKNLTTGDLVKFGLI 232 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L+ D ILT+ ++ L+ QYK+L+ + + L+FTE ++ A+AD+ Sbjct: 233 PEFIGRIPIITTLDKLSTKDLIRILTEPKNALVKQYKKLLSLDNVDLEFTEGALKAIADM 292 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A++ + +GAR L++++E L D+ + Sbjct: 293 AISRH-----MGARGLRSIVENSLMDVMY 316 >gi|294670435|ref|ZP_06735317.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307899|gb|EFE49142.1| hypothetical protein NEIELOOT_02154 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 336 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ SV + G + Sbjct: 92 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQV 151 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +ILFI GAF + P DL+ Sbjct: 152 DTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISELFEIVEPEDLIKFG 211 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QY+ L EG L+F D++ A+A Sbjct: 212 LIPELIGRLPVIATLAELDEDALINILTEPKNALVKQYQALFAMEGAELEFEPDALRAIA 271 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL-QEKTVVIDAEYV 419 +A+ + GAR L++++ER L + + +L Q K VI AE + Sbjct: 272 KLAMTRKT-----GARGLRSIVERALLETMYRLPNLPQVKKAVITAEVI 315 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 30 VAIALRNRWRRQQLP-ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88 +A+A+ N ++R + P A EL NILL+GPTG GKT +++ LAR PF+ + T Sbjct: 1 MAVAVYNHYKRLRHPKAGGAVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATT 60 Query: 89 FTEIGYVGRNVEQIIRDLV 107 TE GYVG +VEQII L+ Sbjct: 61 LTEAGYVGEDVEQIITKLL 79 >gi|255573808|ref|XP_002527823.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] gi|223532747|gb|EEF34526.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis] Length = 603 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD ++IGQ AK+ +A+A+ N ++R ++ AD+ Sbjct: 183 TPKEICKGLDEFVIGQDRAKKVLAVAVYNHYKRIYHGSKRKESGADMGYTDSQNDDNEIV 242 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL N+LL+GPTG GKT +++ LAR+ PF+ + T T+ GYVG +VE I+ L+ Sbjct: 243 ELDKSNVLLMGPTGSGKTLLAKTLARVVNVPFVIADATTLTQAGYVGEDVESILYKLL 300 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 66/233 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYG------------- 289 GI+++DE DKI + + IG VS EGVQ+ LL ++EG+ V+ Sbjct: 313 GIIYIDEVDKITKKAESSNIGRDVSGEGVQQALLKMLEGTIVNVPVPDKGPRKHPRGDPI 372 Query: 290 SINTDHILFIASGAF--------------------------HVSRPAD------------ 311 I+T ILFI GAF R D Sbjct: 373 QIDTKDILFICGGAFVDLEKTISERRQDASIGFGAPVRTNMRTGRMIDAVVASSLLESVE 432 Query: 312 --------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 L+PE GRFP+ V L +LN+ +L + ++ L QYK++ + L FT Sbjct: 433 SGDLVAYGLIPEFVGRFPILVSLSALNEDQLVQVLVEPKNALGKQYKKMFSMNDVKLHFT 492 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++++ +A A+ N+ GAR L+ ++E +L + + + + + I A Sbjct: 493 DEALRLIAKKAMAKNT-----GARGLRAILESILTEAMYEIPENKTGSNCISA 540 >gi|225569252|ref|ZP_03778277.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM 15053] gi|225162051|gb|EEG74670.1| hypothetical protein CLOHYLEM_05334 [Clostridium hylemonae DSM 15053] Length = 479 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 13/153 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P I + LD Y++GQ+ AK+ +++ + N ++R + D D E+ N+L++GPTG G Sbjct: 128 APHRIKASLDEYVVGQEYAKKVMSVGVYNHYKR--VATDTMDDIEIEKSNMLMIGPTGSG 185 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 KT + + LARL P + T TE GY+G ++E ++ L+ A N V ++ EQ Sbjct: 186 KTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------EQ 239 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDG 158 I +E +D + K TS R+V + ++ G Sbjct: 240 GIIFIDE--IDKIAKKKNTSQ-RDVSGESVQQG 269 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 56/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 240 GIIFIDEIDKIAKKKNTSQRDVSGESVQQGMLKLLEGSDVEVPVGANSKNAMVPLTTVNT 299 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 300 RNILFICGGAFPDLEGIIKERLTKQSSIGFGADLKDKYDHDKTILEKVTVEDLRNFGMIP 359 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ L++ IL + ++ ++ QY++L+ + + LDF E ++ A+A A Sbjct: 360 EFIGRLPIIFTLRGLDQDMLVKILKEPKNAILKQYQKLLALDEVKLDFDEGALQAIAGKA 419 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 + D GAR L+ ++E + DI + D V I EY+ Sbjct: 420 ME-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVTITKEYI 460 >gi|258646881|ref|ZP_05734350.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister invisus DSM 15470] gi|260404320|gb|EEW97867.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dialister invisus DSM 15470] Length = 412 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P +I +D+Y+I Q DAK A+A+A+ N ++R + D EL NI+++GPTG GK Sbjct: 64 TPEKIKEYMDQYVIEQDDAKVALAVAVYNHYKRIRYEKDDDGVELQKSNIIMLGPTGSGK 123 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 124 TLLAQTLARFLNVPFAISDATTLTEAGYVGEDVENILLRLIQAA 167 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 57/217 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 177 GIVYIDEIDKIAKKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPNQEMIQL 236 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T +ILFI GAF ++R P DLL Sbjct: 237 DTSNILFICGGAFAGIDKVIARRTTRSTMGFGADIKKADEKDIAEVLQNVEPEDLLKFGL 296 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV V L L + IL++ ++ LI QY++L+ + + L F ++ A+A Sbjct: 297 IPEFIGRLPVIVALHPLKEEALIRILSEPKNALIRQYQKLLGMDNVELVFEGKAVRAIAK 356 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 A+ N+ GAR L+ ++E+++ + + +++ Sbjct: 357 KAIERNT-----GARGLRAIIEKIMTKVMYEIPGMKD 388 >gi|281414009|ref|ZP_06245751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Micrococcus luteus NCTC 2665] Length = 358 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 116 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFLQI 175 Query: 292 NTDHILFIASGAF-----------------------HVS---------RPADLL-----P 314 +T ++LFI +GAF H+ RP DLL P Sbjct: 176 DTSNVLFIVAGAFAGLDEIIGSRAGRKGIGFGAPLNHLGAGDVTYADVRPEDLLKFGLIP 235 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV ++ L +LT+ ++ L+ QY+++ +G+ L+F +D++DA+ A Sbjct: 236 EFIGRLPVITTVEDLTHEQLVRVLTEPKNALLKQYQKMFLMDGVELEFEQDALDAVVAQA 295 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVR 420 + GAR L+++ME VL+ + F S SD+ TVVI + VR Sbjct: 296 EARGT-----GARGLRSIMENVLKPVMFELPSRSDV--GTVVISGDVVR 337 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 15/106 (14%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLP----ADLRDELMPK-----------NILLVGPTGV 64 +IGQ+ AKR++A+A+ N ++R + P DL D L + NIL+VGPTG Sbjct: 1 MIGQEAAKRSLAVAVYNHYKRVRGPQARGGDLADRLTERDDLADVEVGKSNILMVGPTGS 60 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR PF + T TE GYVG +VE I+ L+ A Sbjct: 61 GKTYLAQTLARRLNVPFAVADATSLTEAGYVGEDVENILLKLIQAA 106 >gi|241889844|ref|ZP_04777142.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella haemolysans ATCC 10379] gi|241863466|gb|EER67850.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Gemella haemolysans ATCC 10379] Length = 402 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 62/104 (59%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 P++I+ L+ Y+I Q AK++VA+A+ N ++R + EL NI L+G TG GK Sbjct: 61 LEPQKIMEHLNEYVISQDKAKKSVAVAVYNHYKRIIAKENNDIELQKSNIALIGSTGSGK 120 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 TLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQSA 164 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 57/223 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 174 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPGEEMIKI 233 Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315 NT +ILFI GAF S+ +L +PE Sbjct: 234 NTKNILFIIGGAFSGIEEIIKRRLGEKVIGFSKSDELNDNEDIISKVKHEDLVKFGMIPE 293 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV +L+ L++ D +LT+ +++++ QY+ L + +G+ L F +++++ +A ++ Sbjct: 294 FIGRIPVVCYLEELDEKDLVRVLTEPKNSVVKQYEYLFELDGVKLVFEKEALEEIAKESI 353 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 + GAR L++++E +L D+ F S D++ TV D Sbjct: 354 KRKT-----GARGLRSIIEELLLDVMFEIPSKKDIKTCTVTRD 391 >gi|114319436|ref|YP_741119.1| ATP-dependent protease ATP-binding subunit ClpX [Alkalilimnicola ehrlichii MLHE-1] gi|114225830|gb|ABI55629.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Alkalilimnicola ehrlichii MLHE-1] Length = 415 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 9/120 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNR-----WRRQQLPADLRDELMPKNILLVGPT 62 +PR++ + LD Y+IGQ+ AKR +A+A+ N WR + P E+ NIL+VGPT Sbjct: 71 TPRQLHAHLDGYVIGQERAKRQLAVAVYNHYKRLIWRGARRPG----EVAKSNILMVGPT 126 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 G GKT + LAR PF+ + + FT GY G +V+ I L++ A +RR V Sbjct: 127 GSGKTLLLESLARHLEVPFVTADASTFTAAGYAGADVDDIAVRLLEAAGGDPAAARRGMV 186 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 44/163 (26%) Query: 245 GIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSINTD 294 G+VFLDE DK+ R SGNG S EGVQ+ LL L+EG V+ S++T Sbjct: 184 GMVFLDEVDKLACRAPGGSGNGRDFSGEGVQQALLRLLEGRVVNVPRRGRGGGVHSVDTR 243 Query: 295 HILFIASGAFHVSR------------------------PA----------DLLPEIQGRF 320 +LF+ GAF R PA L+PE+ GR Sbjct: 244 DVLFVCGGAFQGLRQQMAGRRAGGGVGFGARLAETAEPPAVPDADDLVHYGLIPELVGRL 303 Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 PV L++L+++ +++ + L+ QY+ L + +G L FT Sbjct: 304 PVVTTLEALSEAQLLEVISRPRNALLRQYQALFRQDGCELHFT 346 >gi|268678828|ref|YP_003303259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurospirillum deleyianum DSM 6946] gi|268616859|gb|ACZ11224.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sulfurospirillum deleyianum DSM 6946] Length = 412 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 7/122 (5%) Query: 4 TFN---FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNIL 57 +FN +P+E+ LD ++IGQ AK+ ++ + N ++R Q + +D E+ NIL Sbjct: 56 SFNPTLLTPKELKKVLDDFVIGQDQAKKVFSVGVYNHYKRIFKQSMMSD-DTEISKSNIL 114 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 L+GPTG GKT +++ LAR P + T TE GYVG +VE I+ L+ A V+++ Sbjct: 115 LIGPTGSGKTLMAQTLARFLDVPIAISDATSLTEAGYVGEDVENILTKLLQCANGDVKKA 174 Query: 118 RR 119 + Sbjct: 175 EQ 176 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 55/226 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ ++ I Sbjct: 177 GIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQEFIQI 236 Query: 292 NTDHILFIASGAFH--------------------------------VSRPADL-----LP 314 +T +ILF+ +GAF + P DL +P Sbjct: 237 DTTNILFVCAGAFDGLEEIIKRRIGKNVLGFEQEKRSKSQDNGLFDLVEPDDLVHYGLIP 296 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR V L + K D ILT+ ++ + QY++L + + L F +++++A+A++A Sbjct: 297 ELIGRLHVTAKLSPITKEDMVRILTEPKNAIYKQYQKLFGIDNVELTFEKEALEAVAELA 356 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + + GAR L+++ME ++ D+ + +L+ V++ + V+ Sbjct: 357 IKRKT-----GARGLRSIMEELMVDVMYELPELEGYEVIVTKDAVQ 397 >gi|88608107|ref|YP_506628.1| ATP-dependent protease ATP-binding subunit [Neorickettsia sennetsu str. Miyayama] gi|123491542|sp|Q2GD18|CLPX_NEOSM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|88600276|gb|ABD45744.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Neorickettsia sennetsu str. Miyayama] Length = 400 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRD-ELMPKNILLVGPT 62 F+P++I D +I Q+DAK+ +++A+ N ++ +L + +D E+ NIL++GPT Sbjct: 58 FTPKDIKKYFDSFITAQEDAKKILSVAVYNHYKCFVGNRLNS--KDVEITKSNILIIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT ++ LAR PF + T TE GYVG +VE I+R L+ A Sbjct: 116 GCGKTLFAKTLARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSA 163 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 56/232 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 173 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPNQETIQI 232 Query: 292 NTDHILFIASGAF-------------------------HVS-------RPADL-----LP 314 +T +ILFI GAF VS P DL +P Sbjct: 233 DTTNILFICGGAFVGLDNIIANRQSINTMGFKSELQSKEVSPTILKKVEPEDLVKFGMIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV L L + + IL+ ++ L+ QY L + I L F+++++ +A A Sbjct: 293 EFVGRLPVIGVLDELTEDNLVEILSVPKNALVKQYVCLFGMDNIQLSFSDEALKTVARAA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIGD 425 + +GAR L+ +ME VL + F S+ KT++I + VR + + Sbjct: 353 IKRK-----VGARGLRAIMESVLRNYMFELPSNKDVKTLIITEDIVRAEMAN 399 >gi|118474538|ref|YP_891518.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter fetus subsp. fetus 82-40] gi|118413764|gb|ABK82184.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter fetus subsp. fetus 82-40] Length = 406 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 55/220 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 G+VF+DE DKI I VS EGVQ+ LL ++EGS+V+ + I Sbjct: 174 GVVFVDEIDKIARMGENRSITRDVSGEGVQQALLKIIEGSTVNIPPKGGRKHPNQDFIQI 233 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILF+ GAF + R D L+P Sbjct: 234 DTTNILFVCGGAFDGLNEIIERRIGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR L + D ILT+ ++ L+ QY++L +G L F D+I +A A Sbjct: 294 ELIGRLHAIATLNEITTDDMVKILTEPKNALLKQYQKLFAIDGANLKFDNDAIKEVATQA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +N + GAR L+++ME ++ DI F+ DL+ V+I Sbjct: 354 INRKT-----GARGLRSIMEDIMMDIMFNLPDLKGYDVII 388 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTG 63 + +P+ + LD Y+IGQ+ AK+ ++ + N ++R +Q + E+ NILL+GPTG Sbjct: 58 DITPKLLKDVLDSYVIGQEKAKKVFSVGVYNHYKRIFKQDAIEDDTEISKSNILLIGPTG 117 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ LAR P + T TE GYVG +VE I+ L+ A V+ +++ Sbjct: 118 SGKTLMAQTLARFLDVPIAICDATSLTEAGYVGEDVENILTKLLSAAGGDVQRAQQ 173 >gi|222622641|gb|EEE56773.1| hypothetical protein OsJ_06335 [Oryza sativa Japonica Group] Length = 479 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD----------- 49 +P+EI LD+++IGQ+ AK+ +++A+ N ++R D + Sbjct: 61 TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 120 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL NIL++GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ Sbjct: 121 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 178 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + G+ I Sbjct: 191 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 250 Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308 +T +ILFI GAF H S Sbjct: 251 DTKNILFICGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLLESVESG 310 Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L SL++ +LT ++ L QY +L + + L FTE Sbjct: 311 DLIAYGLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEK 370 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++ A+ N+ GAR L++++E +L + + +++ IDA Sbjct: 371 ALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 416 >gi|113955227|ref|YP_729302.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. CC9311] gi|122945884|sp|Q0IE20|CLPX_SYNS3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|113882578|gb|ABI47536.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. CC9311] Length = 451 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI LD ++GQ+ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 85 PQEIKGFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGEAAQTATRLHKSNILLIGP 144 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 145 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQR 202 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 65/239 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF H+ P D Sbjct: 263 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPNDGRGRNRATRDIQAAQVLRHL-EPDD 321 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV L+ L++ ILT+ L+ Q+ L+ + + LDF + Sbjct: 322 LVKYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFSTLLSMDNVQLDFEAQA 381 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVRLHIG 424 ++A+A A + GAR L+ ++E ++ D+ + SD I V H G Sbjct: 382 VEAIAKEAHRRKT-----GARALRGIVEELMLDLMYELPSDQNVTAFTITKAMVEEHTG 435 >gi|242059473|ref|XP_002458882.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor] gi|241930857|gb|EES04002.1| hypothetical protein SORBIDRAFT_03g042120 [Sorghum bicolor] Length = 623 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRD----- 49 +PRE+ LD ++IGQ AK+ +++A+ N ++R LP D Sbjct: 206 TPREMCRRLDEFVIGQAKAKKVLSVAVYNHYKRIYNANVQKESAANSGLPDAGHDDQNIV 265 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 E+ N+LL+GPTG GKT +++ LAR+ PF+ + T T+ GYVG +VE I++ L+ Sbjct: 266 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLLVA 325 Query: 110 A 110 A Sbjct: 326 A 326 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 73/241 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + GS I Sbjct: 336 GIVYIDEIDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNDSIQI 395 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF S P Sbjct: 396 DTTDILFICGGAFVDLEKTISERRQDSSIGFGAPVRTNMRSSGASCPMVTSTLLESVESG 455 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ Sbjct: 456 DLVRYGLIPEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQYRKMFNLNKVRLHFTDG 515 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418 ++ +A A+ ++ GAR L+ ++E VL + + D EKT VV+D E Sbjct: 516 ALRLVAKKAIAKST-----GARGLRAILETVLLEAMYEIPD--EKTGNERVDAVVVDEEA 568 Query: 419 V 419 + Sbjct: 569 I 569 >gi|238917542|ref|YP_002931059.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] gi|238872902|gb|ACR72612.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Eubacterium eligens ATCC 27750] Length = 468 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 6/116 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTG 63 +P EI +LD Y+IGQ AK+ +++A+ N ++R + AD R E+ N+L++GPTG Sbjct: 122 APHEIKRKLDEYVIGQDYAKKVMSVAVYNHYKR--VSADARILGDVEIEKSNMLMIGPTG 179 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT + + LAR+ P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 180 SGKTYLVKTLARILQVPLAITDATTLTEAGYIGDDIESVVSKLLLAADNDVEKAEH 235 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 55/209 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + VS E VQ+ +L L+EGS + G ++N Sbjct: 235 HGIIFIDEIDKIAKKKETRSRDVSGESVQQGMLKLLEGSEIEVPVGATSKNAMVPQVTVN 294 Query: 293 TDHILFIASGAF-----------------------------------HVS----RPADLL 313 T ILFI GAF +V+ R ++ Sbjct: 295 TKDILFICGGAFPDLEDIIKTRLNKSSSMGFNADLKDKYDDEKNIMSYVTVDDLREYGMI 354 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L L++ IL + ++ ++ QY++L++ + + L+FT+D++ ++A Sbjct: 355 PEFLGRLPIIYSLDRLDEDMLVNILKEPKNAILKQYQKLLELDEVKLEFTDDALRSIARK 414 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ D GAR L++++E + DI + Sbjct: 415 AME-----KDTGARALRSIIEDFMLDIMY 438 >gi|209525223|ref|ZP_03273766.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira maxima CS-328] gi|209494408|gb|EDZ94720.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Arthrospira maxima CS-328] Length = 456 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 15/117 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELMP 53 P EI LD+++IGQ + K+ +++A+ N ++R + A D + EL Sbjct: 81 PVEIKQYLDKHVIGQNNTKKVLSVAVYNHYKRLSVDAGNISNQDFDETQGYSDEQVELQK 140 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT ++ LA+L PF + T TE GYVG +VE I+ L+ VA Sbjct: 141 SNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 197 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 63/216 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ + I Sbjct: 207 GIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQI 266 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF P D Sbjct: 267 DTSKILFICGGAFVGLDKLVEQRMGKKSLGFIQPGVKPGEEVQKTSVDTTEILQNVEPQD 326 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV + L++ ILT+ + L+ QYK+L+K + + L+F D+ Sbjct: 327 LVKFGLIPEFIGRVPVLTVISPLDEEALVKILTEPHNALVKQYKQLLKMDNVSLEFEPDA 386 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A + GAR L+ ++E ++ ++ + Sbjct: 387 LIAIAKEAYRRKT-----GARALRGILEELMLEVMY 417 >gi|284097336|ref|ZP_06385466.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus Poribacteria sp. WGA-A3] gi|283831155|gb|EFC35135.1| ATP-dependent Clp protease ATP-binding subunit clpX [Candidatus Poribacteria sp. WGA-A3] Length = 419 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 59/102 (57%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI LD+YII Q AK+ +++A+ N ++R EL NIL++GPTG GKT Sbjct: 64 PAEINRHLDQYIIDQTRAKKILSVAVHNHYKRIAASETGDVELQKGNILMIGPTGTGKTL 123 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA PF + T TE GYVG +VE II L+ A Sbjct: 124 LAQTLADYLDVPFTLADATTLTEAGYVGEDVENIILKLLQAA 165 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 57/233 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + G I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 175 GIIYIDEIDKITRKADGPSITRDVSGEGVQQALLKLIEGTVANVPPQGGRKHPHQEFIQV 234 Query: 292 NTDHILFIASGAF----------------------HVS---RPADLLPEIQ--------- 317 +T +IL I GAF VS RP+ LL +IQ Sbjct: 235 DTKNILVICGGAFVGLEPIIERRLNQNRMGFKSDKSVSAQERPSSLLAQIQPEDLLHYGL 294 Query: 318 -----GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 GR PV L+ L++ IL + ++ L QY++L+ + + L FT+ ++ A+A Sbjct: 295 IPEFIGRLPVVTTLEELDERALTRILIEPKNALTKQYQKLLSFDKVKLKFTDGALHAIAS 354 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 A + GAR L+ +ME V+ DI + E V+ E V L G+ Sbjct: 355 KAHAQKT-----GARGLRAIMEEVMLDIMYEVPSQTEIKEVVITEDVILKKGE 402 >gi|255325487|ref|ZP_05366589.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium tuberculostearicum SK141] gi|255297425|gb|EET76740.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium tuberculostearicum SK141] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 14/115 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLPADLRDELMPKN 55 P +I + LD+Y+IGQ AKR +++A+ N + RR++ D E+ N Sbjct: 68 PSQISAFLDKYVIGQDRAKRVLSVAVYNHYKRIKAEESAALEARRKKAEGD-EVEISKSN 126 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 IL++GPTG GKT +++ LARL PF + T TE GYVG +VE I+ L+ A Sbjct: 127 ILMLGPTGSGKTYLAQTLARLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAA 181 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 58/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ + Sbjct: 191 GIIYVDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQEFIQL 250 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI +GAF RP DL Sbjct: 251 DTSNILFIVAGAFAGLDQVIADRVGKKGVGFGANLDTKDEREKVDLFSQVRPEDLVKFGL 310 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV + +L++ +LT+ +++L+ QY L + + LD ++DA+A+ Sbjct: 311 IPEFIGRLPVVATVDNLDRESLVKVLTEPKNSLVKQYSRLFEMDDCELDIEPAALDAIAE 370 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A+ + GAR L+ +ME +L + + D ++ TV I +E V Sbjct: 371 LALERKT-----GARGLRAIMEELLVPVMYDLPDREDIATVHITSECV 413 >gi|289449742|ref|YP_003475568.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184289|gb|ADC90714.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 440 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADLRD--ELMPKNILLVGP 61 SP+E+ + LD Y+IGQ +AK+ + +A+ N ++R Q D +L N++L+GP Sbjct: 77 SPKEMKAILDEYVIGQDEAKKTLCVAVYNHYKRVFRDPQSETAKEDTVQLDKSNVMLIGP 136 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT ++ LA++ PF + T TE GYVG +VE I+ L+ A + +++R Sbjct: 137 TGCGKTLLASTLAKILHVPFAIADATALTEAGYVGEDVENILLRLIQNANFDIAQAQR 194 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI R I VS EGVQ+ LL ++E + +V + G I Sbjct: 195 GIIYIDEIDKITRRSDNPSITRDVSGEGVQQALLKILESTIANVPPQGGRKHPHQEFIQI 254 Query: 292 NTDHILFIASGAF---------HVSR-------------------------PADLL---- 313 +T +ILFI GAF +R P DLL Sbjct: 255 DTTNILFICGGAFDGLDKIIRRRTNRKSIGFGAEIGSNSSLDDDDVLSQLEPRDLLKFGL 314 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR P+ V LK+L++ +L++ +++LI QYK L++ +G+ L+FT ++I+ +A Sbjct: 315 IPEFIGRVPINVTLKALDQQQLIKVLSEPKNSLIKQYKYLLELDGVDLEFTPEAINEIAA 374 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ + GAR L+ +ME ++ D+ + + K VI A VR Sbjct: 375 AAIKRKT-----GARGLRAIMEEIMLDVMYELPSRHDIKKCVIGASVVR 418 >gi|254458150|ref|ZP_05071576.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacterales bacterium GD 1] gi|207084986|gb|EDZ62272.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacterales bacterium GD 1] Length = 414 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---ELMPKNILLVGPTG 63 +P+E+ + L YIIGQ+ A++ +++A+ N ++R ++ D E+ N+LL+GPTG Sbjct: 62 MTPKELNNFLGDYIIGQERARKLLSVAVYNHYKRIFKTKNITDDDTEIAKSNVLLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR+ P + T TE GYVG +VE I+ L+ A Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLIQAA 168 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DK+ I VS EGVQ+ LL +VEG+ V+ ++ SI Sbjct: 178 GIVFIDEVDKVSRMSENRSITRDVSGEGVQQALLKIVEGAEVNIPPKGGRKHPNQEFTSI 237 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF H + D L+P Sbjct: 238 DTTNILFICGGAFDGLDEILKRKQGNNVLGFGHDKKSKDEQKITYDMVEPDDLVSYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ L +++ D ILT+ +++LI QYK+L + + L+F ED++ A+A A Sbjct: 298 ELVGRLPIIASLNEISEEDMVRILTEPKNSLIKQYKKLFSIDDVELNFEEDALKAIAAKA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E + DI + + V+I E + Sbjct: 358 IKRKT-----GARGLRAILEENMIDIMYELPEYAGYEVLITPEVI 397 >gi|284052170|ref|ZP_06382380.1| ATP-dependent protease ATP-binding subunit ClpX [Arthrospira platensis str. Paraca] gi|291568934|dbj|BAI91206.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthrospira platensis NIES-39] Length = 456 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 15/117 (12%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA---------------DLRDELMP 53 P EI LD+++IGQ + K+ +++A+ N ++R + A D + EL Sbjct: 81 PVEIKQYLDQHVIGQNNTKKVLSVAVYNHYKRLSVDAENISNQGFDETQGYSDEQVELQK 140 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT ++ LA+L PF + T TE GYVG +VE I+ L+ VA Sbjct: 141 SNILLMGPTGCGKTLLAESLAKLLDVPFAVADATTLTEAGYVGDDVENILLRLLQVA 197 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 63/216 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + I Sbjct: 207 GIVYIDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTVVNVPPQGGRKHPYQDFIQI 266 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF P D Sbjct: 267 DTSKILFICGGAFVGLDKVVEQRMGKKSLGFIQPGVKPEEEGVKTSVDSTEVLQNVEPQD 326 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV + L++ ILT+ + L+ QYK+L+K + + L+F D+ Sbjct: 327 LVKFGLIPEFIGRVPVLTVISPLDEEALVKILTEPHNALVKQYKQLLKMDNVSLEFEPDA 386 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + A+A A + GAR L+ ++E ++ ++ + Sbjct: 387 LIAIAKEAYRRKT-----GARALRGILEELMLEVMY 417 >gi|206589404|emb|CAQ36366.1| partial clpx protein [Ralstonia solanacearum MolK2] Length = 1531 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGY 94 T +++ LARL PF+ + T TE GY Sbjct: 129 TLLAQTLARLLNVPFVIADATTLTEAGY 156 >gi|142369|gb|AAA64734.1| ORF [Azotobacter vinelandii] Length = 324 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 59/214 (27%) Query: 243 NYGIVFLDEFDKIVARDSGNGIGV---SREGVQRDLLPLVEGSSVS-TKYGS-------- 290 +GIV++DE DK+ R SG G V S EGVQ+ LL +VEG+ V +K G Sbjct: 61 QWGIVYIDEVDKLAKR-SGGGTAVRDISGEGVQQALLKMVEGTEVRISKSGRRNEHSEEQ 119 Query: 291 -INTDHILFIASGAF--------------------HVSR---------------PADL-- 312 ++T +ILFIA GAF H P DL Sbjct: 120 VVDTRNILFIAGGAFPGLEALVSSRIQPKNTGIGFHAQPRREAPSINELMASLLPDDLHE 179 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFP+ L+ L+ + ILT+ + L+ QYK+L +G+ L T+ +++ Sbjct: 180 FGLIPEFIGRFPIITFLQELDHATLLRILTEPRNALVKQYKQLFAYQGVELVITDAALNY 239 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +AD A+ + GAR L+ V+E L+ F+ Sbjct: 240 IADQAL-----IRKTGARGLRAVLEAALQQTMFN 268 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 + GP+G GKT + R LAR+ G PF + T T+ GYVG +V+ II L+D A V+++ Sbjct: 1 MAGPSGTGKTLLVRTLARILGVPFAMADATTLTQAGYVGDDVDSIITRLLDAAGGDVQQA 60 Query: 118 R 118 + Sbjct: 61 Q 61 >gi|154483382|ref|ZP_02025830.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC 27560] gi|149735892|gb|EDM51778.1| hypothetical protein EUBVEN_01085 [Eubacterium ventriosum ATCC 27560] Length = 519 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 281 GIIFIDEIDKIAKKQNTSSRDVSGESVQQGMLKLLEGSEVEVPVGATSKNAMVPLATVNT 340 Query: 294 DHILFIASGAF-----------------------------------HVS----RPADLLP 314 +ILFI GAF V+ R ++P Sbjct: 341 KNILFICGGAFPDLEDIIKERLNKQAAIGFQSELTDKYDNDPNVMKKVTSEDLRKFGMIP 400 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L L + ILTD ++ +I QY++L++ + + L+FTE ++ +A A Sbjct: 401 EFLGRLPIVFTLDGLTEDMLVKILTDPKNAIIKQYQKLLELDEVKLEFTEGALRTIAKKA 460 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + + GAR L+ ++E+ + DI + D TV I EY+ Sbjct: 461 IEKKT-----GARALRAIIEKFMLDIMYEIPKDDNIGTVKITEEYIN 502 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +P I +LD Y+IGQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 169 APHVIKGKLDDYVIGQDYAKKVMSVAVYNHYKRVATNTMDEIEIEKSNMLMIGPTGSGKT 228 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 + + LA+L P + T TE GY+G ++E ++ L+ A N V ++ E Sbjct: 229 YLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKA------ETGI 282 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 I +E +D + K TS +R+V + ++ G + E+++ V TS + Sbjct: 283 IFIDE--IDKIAKKQNTS-SRDVSGESVQQGMLKLLEGSEVEVPVGATSKN 330 >gi|313905069|ref|ZP_07838439.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium cellulosolvens 6] gi|313470139|gb|EFR65471.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Eubacterium cellulosolvens 6] Length = 504 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVG 65 +P I ++LD Y+IGQ AK+ +A+ + N ++R PA D E+ N+L++GPTG G Sbjct: 151 APHMIKAKLDEYVIGQDRAKKIMAVGVYNHYKRILSEPAKDDDVEIEKSNMLMIGPTGSG 210 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LARL P + T TE GY+G ++E ++ L+ A N V + Sbjct: 211 KTYLVKTLARLLDVPLAMTDATSLTEAGYIGDDIESVVSKLLAAADNDVERAEH 264 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 55/209 (26%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DKI + + N VS E VQ+ +L L+EGS V G ++N Sbjct: 264 HGIIFIDEIDKIAKKKNTNQRDVSGEAVQQGMLKLLEGSEVEVPVGATNKNAMVPLETVN 323 Query: 293 TDHILFIASGAF----------------------------------HVSRPADL-----L 313 T +ILFI GAF R DL + Sbjct: 324 TKNILFICGGAFPDLENVIKERLTKTSTMGFQSELKDRFDGDKDILQQVRMEDLRQFGMI 383 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L+SL + IL + ++ ++ QY++LM+ + + L F ++++ A+A Sbjct: 384 PEFLGRLPIVFALESLTEDMLVEILREPKNAILKQYRKLMEIDEVKLTFEDEALHAIAAK 443 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ ++E + DI + Sbjct: 444 ALERET-----GARALRAIIEDFMLDIMY 467 >gi|153855783|ref|ZP_01996784.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814] gi|149751910|gb|EDM61841.1| hypothetical protein DORLON_02805 [Dorea longicatena DSM 13814] Length = 483 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 71/114 (62%), Gaps = 4/114 (3%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVG 65 +P +I ++LD Y++GQ+ AK+ +++A+ N ++R + D D E+ N+L++GPTG G Sbjct: 132 APHKIKAKLDEYVVGQEYAKKVMSVAVYNHYKR--VATDSMDDIEIEKSNMLMIGPTGSG 189 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + LA++ P + T TE GY+G ++E ++ L+ A N V ++ + Sbjct: 190 KTYLVKTLAKILDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQ 243 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 56/227 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DKI + + + VS E VQ+ +L L+EGS V G ++NT Sbjct: 244 GIIFIDEIDKIAKKKNSSQRDVSGESVQQGMLKLLEGSDVEVPVGATSKNAMVPLTTVNT 303 Query: 294 DHILFIASGAF---------------HVSRPADL------------------------LP 314 +ILFI GAF + ADL +P Sbjct: 304 RNILFICGGAFPDLNGIIKERLTKQAAIGFGADLRDKYNNDKEILKKVTTEDLRAFGMIP 363 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ L+ +++ IL + ++ ++ QY++L+ + + L+F +D++ A+A A Sbjct: 364 EFLGRLPIVFTLQGMSEEMLVEILKEPKNAILKQYQKLLALDEVKLEFNDDALHAIAKKA 423 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 + D GAR L+ ++E + DI + D V+I EY+ Sbjct: 424 LK-----KDTGARALRAIIEEFMLDIMYEIPKDDNIGEVIITKEYIE 465 >gi|168031008|ref|XP_001768014.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680856|gb|EDQ67289.1| predicted protein [Physcomitrella patens subsp. patens] Length = 446 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 24/131 (18%) Query: 8 SPREIVSELDRYIIGQQDAKRA--VAIALRNRWRR--------------------QQLPA 45 +PREI LD++++GQ+ AK+A +++A+ N ++R ++ Sbjct: 12 TPREICQALDKFVVGQEQAKKARILSVAVYNHYKRIYFESMRKGNAKPTNEGFGVSEVEC 71 Query: 46 DLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII- 103 + D EL N+LL+GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ Sbjct: 72 EENDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILY 131 Query: 104 RDLVDVAINIV 114 + LV+ N++ Sbjct: 132 KLLVEAEFNVL 142 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 64/221 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ ++ I Sbjct: 147 GIIYIDEVDKITKKAESKNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGEHIQI 206 Query: 292 NTDHILFIASGAFH------VSRPAD---------------------------------- 311 +T ILFI GAF R D Sbjct: 207 DTKDILFICGGAFVELEKSIAERKQDSSIGFGAPVRANMRGNKLIDAAITSSLLETVESS 266 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +L++ +LT+ + L QYK++ + L +TE Sbjct: 267 DLISYGLIPEFIGRFPVIVSLSALDEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEG 326 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 + +A AV V + GAR L++ +E VL + + D Sbjct: 327 GLRRIAQKAV-----VKNTGARGLRSTLETVLTEAMYQVPD 362 >gi|15806971|ref|NP_295696.1| ATP-dependent protease ATP-binding subunit ClpX [Deinococcus radiodurans R1] gi|21263490|sp|Q9RSZ6|CLPX_DEIRA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|6459761|gb|AAF11525.1|AE002035_8 ATP-dependent Clp protease, ATP-binding subunit ClpX [Deinococcus radiodurans R1] Length = 403 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 52/222 (23%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + G I VS EGVQ+ LL ++EG+ V + G + Sbjct: 171 GIIYVDEIDKIARKSEGTSITRDVSGEGVQQALLKIIEGTVAQVPPQGGRKHPQQELVQV 230 Query: 292 NTDHILFIASGAFH----VSR-------------------------PADL-----LPEIQ 317 +T +ILFI GAF ++R P DL +PE Sbjct: 231 DTRNILFIVGGAFESMSEIARARTNVRAVGFGAEHKGEEKEEVRFLPEDLVKFGLIPEFV 290 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR P+ V L+ L++ ILT+ + +I QY+ L +G+ L F+E+++ +A A Sbjct: 291 GRLPLVVQLQDLDEDALIRILTEPQGAIIKQYQALFGFQGVDLTFSEEALQEVAHRAKER 350 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + GAR L+ V+E+ + D+ F K + +AEY+ Sbjct: 351 KT-----GARGLRAVLEKSMTDLLFELPRDDVKEIRFEAEYI 387 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 3/103 (2%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 S +EI + LD ++IGQ +AK+A+A+A+ + + R P L NILL+GPTG GKT Sbjct: 62 SAKEIKAYLDEFVIGQDEAKKALAVAVVSHYHRLSNP---DAGLQKSNILLIGPTGTGKT 118 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA + PF + T TE GYVG +VE +I L+ A Sbjct: 119 LLAQSLAEMLEVPFAIADATTLTEAGYVGDDVENVIVRLLQAA 161 >gi|115376196|ref|ZP_01463438.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|115366769|gb|EAU65762.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] Length = 320 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 65/216 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVST-----------KYG 289 GIV++DE DKI + G+ +R EGVQ+ LL ++EG+ + +Y Sbjct: 80 GIVYIDEIDKIARK--GDTPSATRDVGGEGVQQALLKIIEGTRANVTPRGGKKYNQQEYV 137 Query: 290 SINTDHILFIASGAFH----------------------------------VSRPADLL-- 313 ++T +ILFI GAFH ++ P DL+ Sbjct: 138 QVDTTNILFICGGAFHGIDGIIKRRVGEKGLGFGARITHREERSVGELLAMAEPEDLMKF 197 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR P+ L L + D +ILT ++ L+ QY++L + E + L F+++S+ A+ Sbjct: 198 GMIPEFIGRLPMVATLNDLKEDDLVIILTQPKNALVKQYQKLFEIEKVKLTFSKESLRAI 257 Query: 371 ADVAVNLNSTVGDIGARRLQTVME----RVLEDISF 402 A A+ NS GAR L+ +ME V+ D+ F Sbjct: 258 AREAMRRNS-----GARGLRAIMEDAMLEVMYDVPF 288 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 40/61 (65%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF + T TE GYVG +VE II++L+ Sbjct: 10 ELQKSNILLIGPTGSGKTLLAQSLARFLNVPFTIADATSLTEAGYVGEDVENIIQNLLHN 69 Query: 110 A 110 A Sbjct: 70 A 70 >gi|78183645|ref|YP_376079.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. CC9902] gi|123729976|sp|Q3B0U2|CLPX_SYNS9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78167939|gb|ABB25036.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Synechococcus sp. CC9902] Length = 450 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P EI S LD+ ++GQ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PLEIKSFLDQQVVGQNAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 66/234 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF---------HVSR-------PAD------------------------ 311 +T ILFI GAF + R PAD Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRSRANRDLQAAQVLRNLEPDD 321 Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+PE GR PV L+ L++ ILT+ L+ Q++ L+ + + L F +D+ Sbjct: 322 LVKYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQLQFADDA 381 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 I A+A A + GAR L+ ++E ++ D+ + DL ++ V D R Sbjct: 382 ITAIAQEAHRRKT-----GARALRGIIEEIMLDLMY---DLPSQSSVKDFTVTR 427 >gi|33864599|ref|NP_896158.1| ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. WH 8102] gi|46576440|sp|Q7UA37|CLPX_SYNPX RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33632122|emb|CAE06578.1| Putative ATP-dependent protease ATP-binding subunit ClpX [Synechococcus sp. WH 8102] Length = 449 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I S LD ++GQ+ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQQIKSFLDEQVVGQEAAKKVMSVAVYNHYKRLAWQGDGQGETEQTATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 103/240 (42%), Gaps = 67/240 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311 +T ILFI GAF + R P D Sbjct: 262 DTSQILFICGGAFVGLDEVVQKRMGRNAIGFMPTDGRGRSRANRELQTTQVLRHLEPDDL 321 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ L++S ILT+ L+ Q++ L+ + + L F +I Sbjct: 322 VKYGLIPEFIGRMPVSAVLEPLDESALESILTEPRDALVKQFRTLLSMDNVQLQFEPAAI 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYVRLHIG 424 A+A A + GAR L+ ++E ++ D+ + S S ++E T I V H G Sbjct: 382 HAIAQEAHRRKT-----GARALRGIVEELMLDLMYDLPSQSTVKEFT--ITQAMVEQHTG 434 >gi|328953539|ref|YP_004370873.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453863|gb|AEB09692.1| ATPase AAA-2 domain protein [Desulfobacca acetoxidans DSM 11109] Length = 367 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 14/120 (11%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------QQLPADLRDEL 51 F +P E+ ++LDR+I+GQ+ K+ +A A+ +RR + + LR Sbjct: 35 FAKTPVELKADLDRFIVGQERGKKTMATAIAFHYRRLGHALKTALAENSKDIEQALRQTR 94 Query: 52 MPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK NI+L+GPTG GKT + + L G PF+ ++TKF+E GYVG+N I+ DL+ A Sbjct: 95 TPKANIVLIGPTGCGKTYTAEVASGLIGVPFVVEDMTKFSETGYVGQNTGDILIDLLVAA 154 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 43/233 (18%) Query: 221 RDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLP 277 ++ D LID+ + Q V G+V+LDE DKI +G I VS GVQ+ LL Sbjct: 141 QNTGDILIDLLVAAGGNPQ-VAQMGVVYLDEIDKI----AGEAIAYRDVSGRGVQKGLLK 195 Query: 278 LVEGSSVSTKYG----SINTDHILFIASGAFH-----VSRPADLLP-------------- 314 L+EG + G S++T H+LFIA G F V + DL Sbjct: 196 LIEGVENTVDLGRERLSLSTRHVLFIAGGVFEKLDAIVQKRMDLHGFSGDWQDYLLTEDL 255 Query: 315 -------EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 ++ GRFPVRV L + ILT E + + Y KT GI L FT +++ Sbjct: 256 VVFGMERQLMGRFPVRVTYDMLTTQNLMDILTQCEESPLQAYIHDFKTWGIELVFTAEAL 315 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+A L S GAR L +++ RVL + F + +D YVR Sbjct: 316 KAIA-----LRSQQERTGARGLISILHRVLSEDLFRRPGSYTGLLQVDEGYVR 363 >gi|317495277|ref|ZP_07953647.1| ATP-dependent Clp protease [Gemella moribillum M424] gi|316914699|gb|EFV36175.1| ATP-dependent Clp protease [Gemella moribillum M424] Length = 403 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVG 65 P+EI+ L+ Y+I Q AK++VA+A+ N ++R D EL NI L+G TG G Sbjct: 61 LKPQEIMDYLNEYVISQDKAKKSVAVAVYNHYKRIMAKQNDETIELQKSNIALIGSTGSG 120 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT I++ LA++ PF + T TE GYVG +VE I+ L+ A Sbjct: 121 KTLIAQTLAKMLDVPFAISDATTLTEAGYVGEDVENILLRLIQNA 165 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 175 GIIYIDEIDKIAKKGENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPGEEMIKI 234 Query: 292 NTDHILFIASGAFH----------------VSRPADL--------------------LPE 315 NT ILFI GAF S+ +L +PE Sbjct: 235 NTKDILFIIGGAFSGIEEIIKRRLGDKIIGFSKSDELNDDSDIISKVKHEDLVKFGIIPE 294 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV HL+ L++ D +LT+ +++++ QY+ L K +G+ L F +D+++ +A ++ Sbjct: 295 FIGRIPVICHLEELDEQDLVRVLTEPKNSVVKQYEYLFKLDGVNLVFEKDALEEVARESI 354 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L++++E L D+ F Sbjct: 355 KRKT-----GARGLRSIIEEALLDVMF 376 >gi|229828301|ref|ZP_04454370.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM 14600] gi|229792895|gb|EEP29009.1| hypothetical protein GCWU000342_00359 [Shuttleworthia satelles DSM 14600] Length = 590 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 23/182 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQ------LPADLRD-ELMPKNI 56 +P +I +LD+Y++GQ AK+ +++A+ N ++R Q+ P DL ++ NI Sbjct: 225 APHKIKEQLDQYVVGQDKAKKMISVAVYNHYKRIASEQENQRELGTPEDLDGVDIEKSNI 284 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE 116 L++GPTG GKT + R LARL P + T TE GY+G ++E ++ L+ A N V Sbjct: 285 LIIGPTGSGKTYMVRTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVDR 344 Query: 117 SRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTS 173 + EQ I +E +D L K T ++R+V + ++ G + E+++ V +S Sbjct: 345 A------EQGIIFVDE--IDKLAKKKNT-HSRDVSGESVQQGMLKLLEGAEVEVPVGASS 395 Query: 174 SD 175 + Sbjct: 396 KN 397 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SINT 293 GI+F+DE DK+ + + + VS E VQ+ +L L+EG+ V G ++NT Sbjct: 348 GIIFVDEIDKLAKKKNTHSRDVSGESVQQGMLKLLEGAEVEVPVGASSKNAMVPMTTVNT 407 Query: 294 DHILFIASGAF-------------------------------HV---SRPADL-----LP 314 +ILFI GAF H+ R DL +P Sbjct: 408 RNILFIVGGAFPGLEDIIKERLSKRSSMGFTSELRGDVGKDIHILEKVRSEDLRNFGMIP 467 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ + L++ F ILT+ ++ +I QY++L+ + + L F++ + A+A A Sbjct: 468 EFLGRLPIVTAFEQLDEDMFVRILTEPKNAIIKQYQKLLALDEVRLTFSDGAFRAIARKA 527 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 ++GAR L++++E + DI + Sbjct: 528 AEE-----ELGARALRSIIEEYMMDIMY 550 >gi|194741360|ref|XP_001953157.1| GF17351 [Drosophila ananassae] gi|190626216|gb|EDV41740.1| GF17351 [Drosophila ananassae] Length = 675 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 449 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 450 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSAASPMDNDQ 509 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN S ILT+ + L+ QYK L Sbjct: 510 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNISMLVRILTEPRNALVPQYKAL 569 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FT+D++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 570 LGLDDVDLTFTDDAVKSIAQLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRGV 624 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 625 HITADYVK 632 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 326 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 385 Query: 109 VAINIVR 115 N+ R Sbjct: 386 ANYNVER 392 >gi|116074349|ref|ZP_01471611.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. RS9916] gi|116069654|gb|EAU75406.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. RS9916] Length = 451 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P+EI + LD ++GQ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQEIKAFLDHQVVGQDAAKKVLSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 63/216 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF----------------------------HVSR------------PAD 311 +T ILFI GAF SR P D Sbjct: 262 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPSSDGRGRNKASRDLQAAQVLRHLEPDD 321 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV L+ L++ + ILT+ L+ Q++ L+ + + LDF ++ Sbjct: 322 LVRYGLIPEFIGRMPVSAVLEPLDEEALKSILTEPRDALVKQFRTLLSMDNVQLDFETEA 381 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A+A A + GAR L+ ++E ++ D+ + Sbjct: 382 VEAIASEAHRRKT-----GARALRGIVEELMLDLMY 412 >gi|115441503|ref|NP_001045031.1| Os01g0886600 [Oryza sativa Japonica Group] gi|56784314|dbj|BAD82240.1| putative CLP protease regulatory subunit CLPX [Oryza sativa Japonica Group] gi|56785236|dbj|BAD82124.1| putative CLP protease regulatory subunit CLPX [Oryza sativa Japonica Group] gi|113534562|dbj|BAF06945.1| Os01g0886600 [Oryza sativa Japonica Group] Length = 496 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------QQLPADLRD---- 49 +PRE+ LD ++IGQ AK+ +++A+ N ++R L A D Sbjct: 79 TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNNI 138 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 E+ N+LL+GPTG GKT +++ LAR+ PFI + T T+ GYVG +VE I++ L+ Sbjct: 139 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLVA 198 Query: 110 A 110 A Sbjct: 199 A 199 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + GS I Sbjct: 209 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 268 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ P Sbjct: 269 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRINMRSSEVTDPMVTSSLLESVESG 328 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ Sbjct: 329 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 388 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418 ++ +A A+ N+ GAR L+ ++E +L + + D EKT VV+D E Sbjct: 389 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 441 Query: 419 V 419 + Sbjct: 442 I 442 >gi|164686708|ref|ZP_02210736.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM 16795] gi|164604098|gb|EDQ97563.1| hypothetical protein CLOBAR_00303 [Clostridium bartlettii DSM 16795] Length = 415 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRD-ELMPKNILLVGPTGVGK 66 P+E++ L+ Y+IGQ+ AK+ +++A+ N ++R + +D ++ NILL+GPTG GK Sbjct: 63 PKEMMEILNDYVIGQERAKKILSVAVYNHYKRIYSKKGNSKDVDIQKSNILLLGPTGSGK 122 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 T +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 123 TLLAQTLAKTLNVPFAMADATSLTEAGYVGEDVENILLKLIQAA 166 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 57/205 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + ++ I Sbjct: 176 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVANVPPQGGRKHPHQEFLKI 235 Query: 292 NTDHILFIASGAFH-----VSR-----------------------------PADLL---- 313 +T ++LFI GAF + R P DLL Sbjct: 236 DTTNVLFILGGAFDGIEKIIQRRGETKTLGFGAKIESKKNVDLGKIYSKVLPEDLLKFGI 295 Query: 314 -PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 PE GR PV L+ L+++ IL + ++ L+ QYK+L++ + + L+F ++++ A+A Sbjct: 296 IPEFIGRIPVVATLELLDENALMRILQEPKNALVKQYKKLLELDNVELEFEDEALRAIAK 355 Query: 373 VAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L++++E V+ Sbjct: 356 KAIERNT-----GARGLRSIVESVM 375 >gi|224006884|ref|XP_002292402.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972044|gb|EED90377.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 348 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 104/231 (45%), Gaps = 63/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK----------YGS 290 GIV++DE DKI R SG + +SR EGVQ LL +VEG+ ++ + Sbjct: 125 GIVYIDEMDKI--RKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKPGRKNPRGDFIQ 182 Query: 291 INTDHILFIASGAF-----------------------------HV-------SRPADL-- 312 I+T +ILFI+ GAF HV ++P DL Sbjct: 183 IDTTNILFISGGAFSGLEKIINRRMDAASIGFGAKMKKNVDDFHVQGKYFDNAQPKDLVT 242 Query: 313 ---LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 +PE GRFPV V K L + ILT +++LI QY GI TE ++ Sbjct: 243 FGMIPEFVGRFPVIVSTKGLTEKSLIDILTVPKNSLIKQYTFQFAMNGIRFHATEGALKE 302 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A +A S GAR L+++ E +L + F ++ TV +DAE V Sbjct: 303 IAKMAFGRGS-----GARGLRSITENMLMETMFVVPSIKNVHTVYLDAEAV 348 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 10/109 (9%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD----ELMPKNIL 57 +P+EI L+ Y+IGQ++ K A+++ + N ++R QQ EL NI+ Sbjct: 3 TPKEIYDGLNEYVIGQRNVKIALSVGVHNHYKRISVVEAQQSALQAMQVEDCELDKSNII 62 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 ++GPTG GKT + + LA+L P + + T T+ GYVG +VE I+ L Sbjct: 63 IIGPTGSGKTLLVKTLAKLIDVPLVIADATCLTQAGYVGEDVESILFKL 111 >gi|313682964|ref|YP_004060702.1| ATP-dependent clp protease ATP-binding subunit clpx [Sulfuricurvum kujiense DSM 16994] gi|313155824|gb|ADR34502.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfuricurvum kujiense DSM 16994] Length = 410 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGV 64 +P+E+ + L +YIIGQ A++ +++A+ N ++R + + E+ N+LL+GPTG Sbjct: 59 LTPKELNTFLGQYIIGQDRARKLLSVAVYNHYKRIFKHTVVEDETEIAKSNVLLIGPTGS 118 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR+ P + T TE GYVG +VE I+ L+ A Sbjct: 119 GKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAA 164 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EG+ V+ + I Sbjct: 174 GIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQDFIQI 233 Query: 292 NTDHILFIASGAF-------------------HVSR-------------PADL-----LP 314 +T ILFI GAF H R P DL +P Sbjct: 234 DTSGILFICGGAFDGLGQILERKKGSNVMGFGHDKRSSSDIDDSFENVEPDDLVSYGLIP 293 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ L +++ + ILT+ +++L+ QY +L + + L F +++++A+A A Sbjct: 294 ELIGRLPIIASLNKISEEEMVRILTEPKNSLVKQYTKLFAIDDVELTFDKEALNAIAAKA 353 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ +ME + D + + V+I E V Sbjct: 354 LARKT-----GARGLRAIMEETMGDTMYELPEYSGYEVLITKEVV 393 >gi|6273581|emb|CAB60145.1| ClpX protein [Oenococcus oeni] Length = 413 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMPKNILLVGPTGVG 65 +P E+V L+ Y+IGQ++AK+ + N +R + L EL NILL+GPTG G Sbjct: 58 TPIELVKHLNEYVIGQEEAKKIFSGRCYNHEKRVNESLQHKSDVELQKSNILLIGPTGSG 117 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA++ PF + T TE GYVG +VE ++ L+ A V +++R Sbjct: 118 KTYLAQSLAKMLDVPFAIADATTLTEAGYVGEDVENVVLKLLQAADFDVEKAQR 171 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 58/200 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTK---------YGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV + Y + Sbjct: 172 GIIYIDEIDKIAKKSENVSITRDVSGEGVQQSLLKLLEGTISSVPPQGGRKHPQQEYIQV 231 Query: 292 NTDHILFIASGAF---------------------------HVSRPAD------------- 311 +T +ILFI GAF H ++ Sbjct: 232 DTSNILFIVGGAFDGIEDVIRDRLGESMIGFGHEDQQEKQHFNKKNPLTQLTDQDVIKFG 291 Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L + D ILT ++ L+ QYK L+ +G+ L F ++ +A Sbjct: 292 LIPEFLGRLPIISILNPLYEDDLVKILTKPKNALVKQYKALLALDGVQLVFDPKALKEMA 351 Query: 372 DVAVNLNSTVGDIGARRLQT 391 +A++ S GAR L++ Sbjct: 352 KIAIDKKS-----GARGLRS 366 >gi|314968427|gb|EFT12525.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Propionibacterium acnes HL037PA1] Length = 429 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 9/120 (7%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------ELMPKNILLV 59 PRE+ LD ++I Q+ A R +++A+ N ++R Q A++ EL NIL++ Sbjct: 65 PRELCEFLDAWVICQKYAMRTLSVAVYNHYKRIQSEANVPRARRAEDDGVELRKSNILML 124 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GPTG GKT +++ +AR PF + T TE GYVG +VE I+ L+ A V+ + R Sbjct: 125 GPTGCGKTYLAQTMARQLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAER 184 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 185 GIVYIDEIDKVARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQDFIQI 244 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T ++LFI GAF + RP DL Sbjct: 245 DTTNVLFIVGGAFAGLEDIIAKRIGTRPLGFNNDPGASEVIEGPEALSLVRPEDLHQFGL 304 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR P+ + L++ ILT+ + L Q+++L + +G+ L FTE +++A+AD Sbjct: 305 IPEFIGRLPMVTAVHPLDRKALVRILTEPRNALTRQFEKLFELDGVELTFTEGALEAIAD 364 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 AV + GAR L+ ++E L D+ F Sbjct: 365 KAVARGT-----GARGLRAIIEETLMDVMF 389 >gi|78211619|ref|YP_380398.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. CC9605] gi|123579027|sp|Q3ANI9|CLPX_SYNSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78196078|gb|ABB33843.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. CC9605] Length = 449 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I S LD+ ++GQ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQDIKSFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKAEMDVDQAQR 201 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 65/226 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311 +T ILFI GAF + R P+D Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPSDGRGRSRANRDLQAAQVLRHLEPDDL 321 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ L++S + ILT+ L+ Q++ L+ + + L F +D+I Sbjct: 322 VRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMDNVQLQFADDAI 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A+A A + GAR L+ ++E ++ D+ + DL +T V Sbjct: 382 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY---DLPSQTSV 419 >gi|238021855|ref|ZP_04602281.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147] gi|237866469|gb|EEP67511.1| hypothetical protein GCWU000324_01759 [Kingella oralis ATCC 51147] Length = 426 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLP----ADLRD-ELMPKNILLVGPT 62 +P E+V++L+ ++IGQ AK+A+A+A+ N ++R + P A+L + EL N+LL+GPT Sbjct: 65 TPAELVAQLNEHVIGQDAAKKALAVAVYNHYKRLRQPENGKAELANVELSKSNVLLIGPT 124 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 G GKT +++ LAR PF + T TE GYVG +VEQII L+ Sbjct: 125 GSGKTLLAQSLARKLNVPFAMADATTLTEAGYVGEDVEQIITKLL 169 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 58/223 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL LVEG+ SV + G S+ Sbjct: 182 GIVYIDEIDKISRKSDSPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRRNPNQQFISV 241 Query: 292 NTDHILFIASGAF-----------------------------HVSR------PADLL--- 313 +T +ILFI GAF ++S P DL+ Sbjct: 242 DTSNILFICGGAFAGLDKVIRQRTEQGGIGFGAQVHSKDDNANISELFAQVEPEDLIKFG 301 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L+++ ILT+ ++ L+ Q++ L E L F D++ A+A Sbjct: 302 LIPELIGRLPVLASLAELDEAALVRILTEPKNALVKQFQALFAMENADLQFEPDALAAIA 361 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 +A+ + GAR L++++ERVL + ++ DL++ V+ Sbjct: 362 ALAMKRKT-----GARGLRSIVERVLLETMYALPDLKDVAKVV 399 >gi|320581114|gb|EFW95336.1| ATP-binding protein [Pichia angusta DL-1] Length = 432 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 48/220 (21%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVS-----------------T 286 GIV LDE DK+ G + EGVQ+ LL LVEG+SVS T Sbjct: 173 GIVVLDELDKLAKPQVYAGTKDIGGEGVQQALLKLVEGTSVSVQGKKSNHMENTGLGGGT 232 Query: 287 KYGSINTDHILFIASGAF--------------------HVSRPADL-----LPEIQGRFP 321 +++T ILFI GAF ++P+DL +PE+ GR P Sbjct: 233 AEYTVDTSTILFIGMGAFTGLDKIIKKRLGRKKQSDVLSKAQPSDLEQYGLIPELVGRMP 292 Query: 322 VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTV 381 V LK L D IL + +++++ QY+ G+ L FT+ ++ +A+ A+ N T Sbjct: 293 VFSSLKQLEVDDLERILVEPQNSIVRQYEYSFAKSGVRLAFTKSAVRKIAETALK-NGT- 350 Query: 382 GDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 GAR L+ V+E+VL ++ V++D E + + Sbjct: 351 ---GARGLRGVLEKVLLAANYECPGSGISFVLVDEEVMEM 387 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 21/132 (15%) Query: 5 FNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------LP-----AD 46 ++F +PR++ + LD+YIIGQ K+ +++A+ N + R Q P +D Sbjct: 40 YSFPTPRQMKAHLDKYIIGQDHCKKVLSVAVFNHYIRVQDASNETSSTLLGAPVLHKKSD 99 Query: 47 LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 EL NILL GPTG GKT + +AR+ P + + T T+ GYVG +VE I L Sbjct: 100 TGVELEKSNILLFGPTGSGKTLAATTMARVLQVPIVIQDCTSLTQAGYVGEDVESCILKL 159 Query: 107 V---DVAINIVR 115 + D +N+ + Sbjct: 160 LAKADYDVNLCQ 171 >gi|58699504|ref|ZP_00374231.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila ananassae] gi|58533977|gb|EAL58249.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila ananassae] Length = 216 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 MKL P +I + L ++++GQ+ A+ +++A+ N + Q A E+ NI+L+ Sbjct: 63 MKLLLK-KPEDIKNFLSKHVVGQEHAQHVLSVAMYNHCQSMVQFHAISDIEIEKSNIMLI 121 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GPTG GKT +++ LA+++ PF + T TE GYVG +VE ++ L+ A ++V+ R Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAANYDVVKAQR 181 >gi|33241266|ref|NP_876208.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46576459|sp|Q7V9L5|CLPX_PROMA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33238796|gb|AAQ00861.1| ATP-dependent protease Clp ATPase subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 450 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 7/106 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P EI S LD ++GQ+DAK+ +++A+ N ++R +E L NILL+GP Sbjct: 82 PIEIKSFLDNQVVGQEDAKKILSVAVYNHYKRLAWQGSETNEIDLHTTKLHKSNILLIGP 141 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ Sbjct: 142 TGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLL 187 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 62/215 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 200 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDSIQI 259 Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312 +T ILFI GAF + P DL Sbjct: 260 DTSQILFICGGAFVGLEDIVQKRLGRNSIGFMTNDNRGKSRKSNDLPKNQVLNNLEPDDL 319 Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 +PE GR PV L+ L+ IL + +I Q+ LM + + L F E++I Sbjct: 320 VRYGLIPEFIGRMPVSAVLEPLDVDALEAILQEPRDAVIKQFITLMSMDNVKLTFEENAI 379 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 ++A A + GAR L+ ++E ++ ++ + Sbjct: 380 KSIAKEAFRRKT-----GARALRGIVEELMLELMY 409 >gi|27374353|gb|AAO01094.1| CG4538-PA [Drosophila willistoni] Length = 675 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 396 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 449 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 450 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 509 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN + ILT+ + L+ QYK L Sbjct: 510 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNINMLVRILTEPRNALVPQYKAL 569 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 570 LGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRRV 624 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 625 HITADYVK 632 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 326 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 385 Query: 109 VAINIVR 115 N+ R Sbjct: 386 ANYNVER 392 >gi|184200756|ref|YP_001854963.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria rhizophila DC2201] gi|238689204|sp|B2GGB7|CLPX_KOCRD RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|183580986|dbj|BAG29457.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Kocuria rhizophila DC2201] Length = 431 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 13/115 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRDE----LMPKN 55 P+++ L Y+IGQ+ AKR++A+A+ N ++R L DE + N Sbjct: 64 PKQVYDHLQEYVIGQEPAKRSLAVAVYNHYKRIRAGVSGHTLSLAGAEGDEEAIEVAKSN 123 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ILLVGPTG GKT +++ LA+ PF + T TE GYVG +VE I+ L+ A Sbjct: 124 ILLVGPTGSGKTYLAQSLAKKLDVPFAVADATSLTEAGYVGEDVENILLKLIQAA 178 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 54/207 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 188 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFLHI 247 Query: 292 NTDHILFIASGAFH-------------------------------VSRPADLL-----PE 315 +T ++LFI +GAF +P DLL PE Sbjct: 248 DTTNVLFIVAGAFAGLEEIVQQRTGKKGIGFGAPIRDTADVDIAGQVQPEDLLKFGLIPE 307 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR PV L L+ +D ILT+ + L+ QY++L + +G+ L F +++A+A++A+ Sbjct: 308 FIGRLPVVATLSKLSVADMVRILTEPRNALVKQYRKLFQLDGVELTFDPQALEAIAELAL 367 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISF 402 + GAR L+ ++E +L + F Sbjct: 368 ERGT-----GARGLRAILEDILMPVMF 389 >gi|195450106|ref|XP_002072367.1| GK22807 [Drosophila willistoni] gi|194168452|gb|EDW83353.1| GK22807 [Drosophila willistoni] Length = 683 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 404 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 457 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 458 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSGSGRRAAQSAATPMDNDQ 517 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN + ILT+ + L+ QYK L Sbjct: 518 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNINMLVRILTEPRNALVPQYKAL 577 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED++ ++A +A+ ++ GAR L+++ME++L D F + V Sbjct: 578 LGLDEVDLTFTEDAVKSIATLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRRV 632 Query: 413 VIDAEYVR 420 I A+YV+ Sbjct: 633 HITADYVK 640 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 334 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 393 Query: 109 VAINIVR 115 N+ R Sbjct: 394 ANYNVER 400 >gi|116071741|ref|ZP_01469009.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. BL107] gi|116065364|gb|EAU71122.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. BL107] Length = 450 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P EI S LD+ ++GQ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PLEIKSFLDQQVVGQNAAKKLMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVDQAQR 201 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 66/237 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF---------HVSR-------PAD------------------------ 311 +T ILFI GAF + R PAD Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPPADSRGRNRTNRDLQAAQVLRNLEPDD 321 Query: 312 -----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+PE GR PV L+ L++ ILT+ L+ Q++ L+ + + L+F +D+ Sbjct: 322 LVKYGLIPEFIGRIPVSAVLEPLDEKTLESILTEPRDALVKQFRTLLSMDNVQLEFADDA 381 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 I A+A A + GAR L+ ++E ++ D+ + DL ++ V D R + Sbjct: 382 ITAIAQEAHRRKT-----GARALRGIIEEIMLDLMY---DLPSQSSVKDFTVTRAMV 430 >gi|189182914|ref|YP_001936699.1| ATP-dependent protease ATP-binding subunit ClpX [Orientia tsutsugamushi str. Ikeda] gi|238692227|sp|B3CQC6|CLPX_ORITI RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|189179685|dbj|BAG39465.1| ATP-dependent Clp protease ATP-binding subunit [Orientia tsutsugamushi str. Ikeda] Length = 417 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 5/117 (4%) Query: 6 NFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 N+S P++I ++ +++GQQ A + +A+A+ + R + +L D + N+LL+GPT Sbjct: 57 NYSKLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFE-HRELADLVAKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 G GKT I++ LA++ PF + T TE GYVG +VE II L+ A N+ R + Sbjct: 116 GCGKTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQK 172 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ ++ I Sbjct: 173 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQEFIQI 232 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T ++LFI GAF V D L Sbjct: 233 DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEADDLTKFGL 292 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L LN+ ILT ++ L+ QY++L + +G L F E+++ A+A Sbjct: 293 IPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALVAIAQ 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E VL D F S+L+ V+I A+ V+ Sbjct: 353 KALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVK 395 >gi|148284535|ref|YP_001248625.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi str. Boryong] gi|166214796|sp|A5CDP2|CLPX_ORITB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|146739974|emb|CAM80014.1| ATP-dependent protease ATP-binding subunit [Orientia tsutsugamushi str. Boryong] Length = 417 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 5/117 (4%) Query: 6 NFS---PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 N+S P++I ++ +++GQQ A + +A+A+ + R + +L D + N+LL+GPT Sbjct: 57 NYSKLPPKKIYEAINAHVVGQQQAAKILAVAVYIQCIRFE-HRELADLVAKSNVLLIGPT 115 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 G GKT I++ LA++ PF + T TE GYVG +VE II L+ A N+ R + Sbjct: 116 GCGKTLIAQTLAKIINVPFAMADATSLTEAGYVGEDVENIILRLLQAADFNVERAQK 172 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 57/228 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + I Sbjct: 173 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIMEGTIALVPPQGGRKHPQQDFIQI 232 Query: 292 NTDHILFIASGAFH--------------------VSRPAD-------------------L 312 +T ++LFI GAF V D L Sbjct: 233 DTTNMLFICGGAFTGIEKIIEARTSQSTIGFEATVKSKHDQDYNQILNNLEADDLTKFGL 292 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L LN+ ILT ++ L+ QY++L + +G L F E+++ A+A Sbjct: 293 IPEFLGRLPVIATLSDLNQQSLVDILTKPKNALVKQYQKLFELDGAELIFEEEALIAIAQ 352 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E VL D F S+L+ V+I A+ V+ Sbjct: 353 KALAKKT-----GARGLRAILECVLLDTMFELSNLKNMQVIITADIVK 395 >gi|218659018|ref|ZP_03514948.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli IE4771] Length = 127 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Query: 18 RYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 +Y+IGQ+ AK+ +++A+ N ++R + EL NI+LVGPTG GKT +++ LAR+ Sbjct: 37 KYVIGQRQAKKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARI 96 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 PF + T TE GYVG +VE II L+ Sbjct: 97 IDVPFTMADATTLTEAGYVGEDVENIILKLL 127 >gi|326489807|dbj|BAJ93977.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 619 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR------QQLPADLRD------------ 49 +PRE+ LD ++IGQ AK+ +++A+ N ++R Q+ AD Sbjct: 202 TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRVYNATVQKGSADNSGCPDAANDDHDNV 261 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 E+ N+LL+GPTG GKT +++ LAR+ PF+ + T T+ GYVG +VE I++ L+ Sbjct: 262 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATSLTQAGYVGEDVESILQKLL 319 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ V+ + GS I Sbjct: 332 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVTIPEKGSRKNSRNDSIQI 391 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ P Sbjct: 392 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRTNIRSSGVTSPTVTSSLLESVESG 451 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ Sbjct: 452 DLAKFGLIPEFIGRLPILVSLAALNEDQLVQVLTEPKNSLSRQYRKMFSLNNVKLHFTDG 511 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A+ V + GAR L+ ++E +L + + D + +DA Sbjct: 512 ALRIVAKKAI-----VKNTGARGLRVILETILLEAMYEIPDEKAGNERVDA 557 >gi|257459195|ref|ZP_05624314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter gracilis RM3268] gi|257443580|gb|EEV18704.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Campylobacter gracilis RM3268] Length = 412 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD-ELMPKNILLVGPTGVG 65 P+ ++ L+RY+IGQ+ AK+ ++ + N ++R +Q A D E+ NILL+GPTG G Sbjct: 64 PKALMEVLNRYVIGQERAKKIFSVGVYNHYKRIFRQTDAKGDDTEISKSNILLIGPTGSG 123 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT +++ LA+ P + T TE GYVG +VE I+ L+ A V +++R Sbjct: 124 KTLMAQTLAKFLDVPIAISDATSLTEAGYVGEDVENILTRLLQAADGDVEKAQR 177 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EGS V+ + I Sbjct: 178 GIVFVDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSVVNIPPKGGRKHPNQDFIQI 237 Query: 292 NTDHILFIASGAFH-----VSR--------------------------PAD------LLP 314 +T +ILF+ GAF ++R AD ++P Sbjct: 238 DTTNILFVCGGAFDGLNEIINRRIGQNVLGFNQTKRSKKESLNLLNMVEADDLVHYGIIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L +++ ILT+ ++ ++ QY++L +G L F +D++ +A +A Sbjct: 298 ELIGRLHIVATLNEIDEKAMVRILTEPKNAILKQYQKLFAIDGANLKFDDDALREVASLA 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E ++ DI F +L+ V+I E V Sbjct: 358 IKRKT-----GARGLRSIIEEIMIDIMFDLPELKGYDVIISKEVV 397 >gi|196019813|ref|XP_002119046.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens] gi|190577177|gb|EDV18468.1| hypothetical protein TRIADDRAFT_35097 [Trichoplax adhaerens] Length = 246 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 59/232 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ S ++ I Sbjct: 1 GIIYIDEIDKISRKSESPSITRDVSGEGVQQALLKLMEGTVASIPPQGGRKHPQQEFLQI 60 Query: 292 NTDHILFIASGAFH-----------------------------VSR------PADL---- 312 NT +ILF+ SGAF VS P DL Sbjct: 61 NTKNILFVCSGAFSGLDKIINQRKKDSSIGFEAIVKNKDEDSSVSNVINGVEPEDLVKYG 120 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR P+ V + L++S IL + +++LI QY++L I L+F E++ +A Sbjct: 121 LIPEFIGRLPLIVTINDLDESMLIRILKEPKNSLIQQYQKLFDLNDIKLNFEENAFKEIA 180 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVRLH 422 +A + GAR L+ ++E +L D+ F S+ + K + I ++ ++L+ Sbjct: 181 KIAFKRKT-----GARGLRAILENILLDLMFDFSNKKNIKEITITSDVIKLN 227 >gi|195327500|ref|XP_002030456.1| GM24560 [Drosophila sechellia] gi|194119399|gb|EDW41442.1| GM24560 [Drosophila sechellia] Length = 667 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 62/208 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS-TKYGSI-------NTDHI 296 GIV+LDE D+I A SG+ +G+Q+ +L ++EGS VS T G + +T +I Sbjct: 418 GIVYLDEVDQICAL-SGS------KGIQQGMLKMLEGSVVSLTNRGQLFGKAVQLDTTNI 470 Query: 297 LFIASGAF-----------------------------HVSR--------PADL-----LP 314 LF+ASGAF H R DL +P Sbjct: 471 LFVASGAFTGLDKIIERRINEKNSDVTSTGEAGPPNAHQERDKCLIKVQACDLAKFGMIP 530 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ G FP+ V SL+ ILT+ + L+ QYK +++ +G+ L F+ D++ ++A +A Sbjct: 531 ELVGHFPIIVPFHSLDAYMLFRILTEPPNALVSQYKAMLRLDGVELTFSHDALISVAQLA 590 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + G++GAR L+ +ME++L D F Sbjct: 591 MK-----GNMGARGLRPIMEQLLLDPMF 613 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NI+++ PTG GKT I++ +A+ PF + T + YVG ++E ++ L+ Sbjct: 348 ELEKSNIMMLAPTGSGKTLIAKSIAKCLDVPFAICDCTTLMQADYVGGDIESVLLKLLQD 407 Query: 110 AINIVRESRR-----DEVREQASINAEERILDALV 139 A N V ++ DEV + +++ + I ++ Sbjct: 408 ANNDVERAQTGIVYLDEVDQICALSGSKGIQQGML 442 >gi|153871108|ref|ZP_02000361.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS] gi|152072424|gb|EDN69637.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS] Length = 429 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 8/111 (7%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPAD-----LRDELMPKNILLV 59 +P + ++LD Y+IGQ+ AK + +A+ N ++R + P L E+ N+L++ Sbjct: 64 TPAAMKAQLDDYVIGQELAKEILTVAVYNHYKRLYHKTTPNHFDKLYLDVEIGKSNVLML 123 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GP+G GKT ++ LA++ G PF+ + T T+ GYVG +VE I+ L+DVA Sbjct: 124 GPSGTGKTLLASTLAKIVGVPFVIADATTLTQAGYVGDDVESILLRLLDVA 174 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 65/249 (26%) Query: 226 RLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS 282 RL+D V + I+ E +GI+++DE DKI AR S + + VS EGVQ+ LL LVEG+ Sbjct: 169 RLLD---VAKGKIKRAE-WGIIYIDEIDKI-ARASKSAMVERDVSGEGVQQALLKLVEGT 223 Query: 283 SVSTKYGS----------INTDHILFIASGAF--------------------HV------ 306 +V ++T ILFIA GAF H Sbjct: 224 TVKIPQSKERMRDNGTSIMDTSQILFIAGGAFVGLEEQVAKRISAKQTQIGFHAQVEKTD 283 Query: 307 ----------SRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 ++P DL +PE GRFP+ L+ L+++ ILT+ + L+ QY++ Sbjct: 284 KITAERLLQETQPEDLRRFGLIPEFIGRFPILAILEDLDETALVRILTEPRNALVRQYQK 343 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 L E + L+FT ++ A+A A+ + GAR L+ + E++L F Q+ Sbjct: 344 LFAYENVELEFTAKALAAIAKKALAQGT-----GARGLRNIQEQLLRRCMFELPSRQDIV 398 Query: 412 -VVIDAEYV 419 ++D E V Sbjct: 399 RCIVDEEAV 407 >gi|50292183|ref|XP_448524.1| hypothetical protein [Candida glabrata CBS 138] gi|49527836|emb|CAG61485.1| unnamed protein product [Candida glabrata] Length = 549 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 96/384 (25%), Positives = 166/384 (43%), Gaps = 86/384 (22%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+L++GP+G GKT +++ LAR+ P + T+ T+ GY+G +VE I L+ Sbjct: 166 ELSKSNVLVIGPSGSGKTLLAQTLARVLDVPIAISDCTQLTQAGYIGEDVEVCIERLL-- 223 Query: 110 AINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169 +NA + K G I EID ++ Sbjct: 224 ------------------VNANYDV------------------AKAEKGIIVLDEID-KL 246 Query: 170 ADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI 228 A +SS D+ G G +L + E + ++V+K P ++ +D+ Sbjct: 247 AKSSSSFGTKDVSGEGVQQSLLKIIE----------GHNVEITVKK--P--VKVGTDKNN 292 Query: 229 DMDTVHRDSIQMVENYGIVFL-----DEFDKIVA---RDSGNGIGVSREGVQRDLLPLVE 280 + T +D ++ I+F+ DKIVA R N E + + Sbjct: 293 NQTTAKKDETFVINTSNILFMIMGAFVNLDKIVAKRIRKLQNKEEKDGEEED-----MSK 347 Query: 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFR 335 S+ S +IN ++ + A +++ P DL +PE+ GR P+ L+ L +D Sbjct: 348 SSAYSNSIETINLEN--GKQTSALNLATPTDLVSYGMIPELVGRVPIITALEPLQSNDLF 405 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + ++ L QY + K G+ L T+ ++ +AD A+ + GAR L+ +MER Sbjct: 406 HILKEPKNALFDQYTYIFKQFGVRLCMTDKALKKVADFALKERT-----GARGLRGIMER 460 Query: 396 VLEDISFSASD-------LQEKTV 412 +L ++++ D + EKTV Sbjct: 461 LLLNVNYECPDSGISYVLVNEKTV 484 >gi|71066497|ref|YP_265224.1| ATP-dependent protease ATP-binding subunit ClpX [Psychrobacter arcticus 273-4] gi|123647822|sp|Q4FQB8|CLPX_PSYA2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|71039482|gb|AAZ19790.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter arcticus 273-4] Length = 424 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 14/117 (11%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL--------------PADLRDELMP 53 +P+E+ ++LD Y+IGQ AK+A+A+A+ N ++R ++ AD EL Sbjct: 66 TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQTLANDSKKAKIGAADAMVELAK 125 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LARL PF + T TE GYVG +VE I++ L+ + Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLLQAS 182 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ + +G + Sbjct: 192 GIIYIDEIDKISKKGDNPSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPQQELIQV 251 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +IL I GAF P DL+ Sbjct: 252 DTSNILIIVGGAFAGLDKVIQQRTEKTGIGFNADVSSKDDSRRSSELLQQVEPEDLIKFG 311 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QYK L EG + FT++++DA+A Sbjct: 312 LIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E L + + ++ KTV++D + + Sbjct: 372 KKAMARKT-----GARGLRSIVENALLETMYELPSMKNAKTVLVDEQVI 415 >gi|148238400|ref|YP_001223787.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 7803] gi|166215216|sp|A5GHS5|CLPX_SYNPW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|147846939|emb|CAK22490.1| ATP-dependent Clp protease ATP-binding subunit, ClpX [Synechococcus sp. WH 7803] Length = 451 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I + LD+ ++GQ+ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 85 PQDIKAFLDQQVVGQEAAKKVMSVAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGP 144 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A Sbjct: 145 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 193 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 64/216 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 203 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 262 Query: 292 NTDHILFIASGAF----------------------------------------HVSRPAD 311 +T ILFI GAF H+ P D Sbjct: 263 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFMPTEGRGRGKATRDLQAAQVLRHLE-PDD 321 Query: 312 L-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L +PE GR PV L+ L++ ILT+ L+ Q++ L+ + + L+F + Sbjct: 322 LVRYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLEFEPSA 381 Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 I+A+A A + GAR L+ ++E ++ D+ + Sbjct: 382 IEAIAQEAHRRKT-----GARALRGIVEELMLDLMY 412 >gi|268562864|ref|XP_002638688.1| Hypothetical protein CBG11883 [Caenorhabditis briggsae] Length = 572 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A + G+ VS EGVQ LL LVEG+ V+ K G Sbjct: 309 GIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 368 Query: 291 INTDHILFIASGAFH-----VSRPAD---------------------------------- 311 I+T ILFIASGAF V R D Sbjct: 369 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELLGK 428 Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 ++PE+ GRFPV V S +K ++T+ +++L+ Q K + + L Sbjct: 429 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 488 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 F+ ++++ +A +A+ + GAR L++++E L + F+ Sbjct: 489 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 525 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 10/112 (8%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 QQ + R R+ ++Q +R L NILLVGP+GVGKT +++ LAR+ P Sbjct: 217 QQQSSRNAPPTFRSLPEKEQA---VR--LEKSNILLVGPSGVGKTFLTQTLARVLDVPIA 271 Query: 83 KVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASIN 129 + T T+ GYVG +VE +I+ LV A V ++++ DEV + A+ N Sbjct: 272 LCDCTSMTQAGYVGEDVESVIQKLVQAAGGNVEKAQQGIVFLDEVDKIAAAN 323 >gi|309360632|emb|CAP30954.2| hypothetical protein CBG_11883 [Caenorhabditis briggsae AF16] Length = 607 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A + G+ VS EGVQ LL LVEG+ V+ K G Sbjct: 344 GIVFLDEVDKIAAANEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 403 Query: 291 INTDHILFIASGAFH-----VSRPAD---------------------------------- 311 I+T ILFIASGAF V R D Sbjct: 404 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTASGNVRISTDDSNSEIMRKRDELLGK 463 Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 ++PE+ GRFPV V S +K ++T+ +++L+ Q K + + L Sbjct: 464 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 523 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 F+ ++++ +A +A+ + GAR L++++E L + F+ Sbjct: 524 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 560 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 5/80 (6%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILLVGP+GVGKT +++ LAR+ P + T T+ GYVG +VE +I+ LV A V Sbjct: 279 NILLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 338 Query: 115 RESRR-----DEVREQASIN 129 ++++ DEV + A+ N Sbjct: 339 EKAQQGIVFLDEVDKIAAAN 358 >gi|6319704|ref|NP_009786.1| Mcx1p [Saccharomyces cerevisiae S288c] gi|586344|sp|P38323|MCX1_YEAST RecName: Full=Mitochondrial clpX-like chaperone MCX1 gi|536622|emb|CAA85190.1| unnamed protein product [Saccharomyces cerevisiae] gi|285810557|tpg|DAA07342.1| TPA: Mcx1p [Saccharomyces cerevisiae S288c] Length = 520 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 110/487 (22%), Positives = 201/487 (41%), Gaps = 142/487 (29%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLP-----ADLRD 49 +P+ + LD YI+GQ+ K+ +++A+ N + R+++L AD RD Sbjct: 38 TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDRD 97 Query: 50 E--------------------------------LMPKNILLVGPTGVGKTAISRRLARLA 77 E L N+L+VGP+G GKT ++ LA++ Sbjct: 98 EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137 P + T+ T+ GY+G +VE I L+ +NAE + A Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCIERLL--------------------VNAEFDVARA 197 Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196 G I EID ++A ++ I D+ G G +L + E Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236 Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256 K+ ++V++ ++ + D + T +D + +V+ I+F+ Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278 Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301 G +G+ + V+R D+ + + G SV + K+ NT + + + Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335 Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 G A ++ P DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 K G+ L T+ ++ +A A+ + GAR L+ +MER+L ++++ V Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450 Query: 413 VIDAEYV 419 +ID V Sbjct: 451 LIDEATV 457 >gi|260435985|ref|ZP_05789955.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. WH 8109] gi|260413859|gb|EEX07155.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Synechococcus sp. WH 8109] Length = 449 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 7/118 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P++I + LD+ ++GQ AK+ +++A+ N ++R D + E L NILL+GP Sbjct: 84 PQDIKNFLDQQVVGQDAAKKVMSVAVYNHYKRLAWQGDGQGETEETATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A V +++R Sbjct: 144 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKADMDVEQAQR 201 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 65/226 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 261 Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311 +T ILFI GAF + R P D Sbjct: 262 DTSQILFICGGAFVGLEDVVQKRMGRNAIGFMPGDGRGRSRANRDLQAAQVLRHLEPDDL 321 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ L++S + ILT+ L+ Q++ L+ + + L F +D+I Sbjct: 322 VRYGLIPEFIGRMPVSAVLEPLDESALQSILTEPRDALVKQFRTLLSMDNVQLQFADDAI 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV 413 +A+A A + GAR L+ ++E ++ D+ + DL +T V Sbjct: 382 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY---DLPSQTSV 419 >gi|309364622|emb|CAP24925.2| hypothetical protein CBG_04167 [Caenorhabditis briggsae AF16] Length = 489 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 75/231 (32%) Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292 GIVFLDEFDKI SGN VS +GVQ+ LL LVEGS V + +I+ Sbjct: 263 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 321 Query: 293 TDHILFI------------------------ASGAFH------------------VSRPA 310 T +ILFI +S + H VS+ Sbjct: 322 TTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTEKLMDSDEENVSKAR 381 Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 D ++PE+ GRFPV V L+KS + +LT+ + +L+ Q K+ + Sbjct: 382 DEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEPKGSLVAQTKKFFEN 441 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 E + L F+ +ID +AD+AV + GAR L++++E+ + + + D Sbjct: 442 ENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAKYEYQD 487 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 52/162 (32%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P+EIV L++Y++GQ+ AK+ +A+A+ +RR + Sbjct: 102 PKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKLRK 161 Query: 42 QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARLA 77 Q P ++ +E +P+ N++L+G +G GKT ++++LA + Sbjct: 162 QNP-EIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVL 220 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 P + + T T+ GYVG +V+ +++ L+ A + +R Sbjct: 221 DVPIVICDCTTLTQAGYVGDDVDTVVQKLLAEARGDIERCQR 262 >gi|125777787|ref|XP_001359727.1| GA18242 [Drosophila pseudoobscura pseudoobscura] gi|54639477|gb|EAL28879.1| GA18242 [Drosophila pseudoobscura pseudoobscura] Length = 666 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435 Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311 + ++T +ILF+ASGA+ V+ P D Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495 Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 ++PE GRFPV V SLN S ILT+ + L+ QYK Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ + + L F ED+++++A +A+ ++ GAR L+++ME++L D F + Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610 Query: 411 TVVIDAEYVR 420 V I E VR Sbjct: 611 GVHITGECVR 620 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371 Query: 109 VAINIVR 115 N+ R Sbjct: 372 ANYNVDR 378 >gi|195157162|ref|XP_002019465.1| GL12413 [Drosophila persimilis] gi|194116056|gb|EDW38099.1| GL12413 [Drosophila persimilis] Length = 666 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435 Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311 + ++T +ILF+ASGA+ V+ P D Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495 Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 ++PE GRFPV V SLN S ILT+ + L+ QYK Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ + + L F ED+++++A +A+ ++ GAR L+++ME++L D F + Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610 Query: 411 TVVIDAEYVR 420 V I E VR Sbjct: 611 GVHITGECVR 620 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371 Query: 109 VAINIVR 115 N+ R Sbjct: 372 ANYNVDR 378 >gi|198477567|ref|XP_002136555.1| GA27659 [Drosophila pseudoobscura pseudoobscura] gi|198142843|gb|EDY71556.1| GA27659 [Drosophila pseudoobscura pseudoobscura] Length = 666 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435 Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311 + ++T +ILF+ASGA+ V+ P D Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495 Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 ++PE GRFPV V SLN S ILT+ + L+ QYK Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ + + L F ED+++++A +A+ ++ GAR L+++ME++L D F + Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610 Query: 411 TVVIDAEYVR 420 V I E VR Sbjct: 611 GVHITGECVR 620 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371 Query: 109 VAINIVR 115 N+ R Sbjct: 372 ANYNVDR 378 >gi|190570983|ref|YP_001975341.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019500|ref|ZP_03335306.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357255|emb|CAQ54679.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994922|gb|EEB55564.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 425 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 59/232 (25%) Query: 244 YGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV-----------STKYGS 290 +GIVF+DE DKI + I VS EGVQ+ LL ++EG+ ++ Sbjct: 181 HGIVFIDEIDKITRKSESTSITRDVSGEGVQQALLKIMEGTVAYVPPQGGRKHPQQEFIQ 240 Query: 291 INTDHILFIASGAFHV----------------------------------SRPADLL--- 313 ++T +ILFI GAF ++P DL+ Sbjct: 241 VDTSNILFICGGAFEGLNKIIEARKKGTSVGFGADISQSKAQKKKNALRDAQPEDLIKFG 300 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR P+ L L+ D +LT+ + L+ QYK L+ + L+F++++I A+A Sbjct: 301 LIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALVKQYKALLAFSKVNLEFSDEAISAIA 360 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVIDAEYVRL 421 A++ + GAR L+ ++E +L D+ + + + + T+ + + V L Sbjct: 361 KKAISYKT-----GARMLRAILESLLLDVMYISGNGGFEGSTITVTKKMVEL 407 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 2/111 (1%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-QLPADLRDELMPKNILLV 59 MKL P +I L ++++GQ+ A+ +++A+ N + QL + E+ NI+L+ Sbjct: 63 MKLLLK-KPEDIKIFLSKHVVGQEHAQHVLSVAMYNHCQSMVQLHSISDIEIEKSNIMLI 121 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT +++ LA+++ PF + T TE GYVG +VE ++ L+ A Sbjct: 122 GPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVLSRLLQAA 172 >gi|116750477|ref|YP_847164.1| ATPase [Syntrophobacter fumaroxidans MPOB] gi|116699541|gb|ABK18729.1| ATPase AAA-2 domain protein [Syntrophobacter fumaroxidans MPOB] Length = 594 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 7/113 (6%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPK 54 K+ F+ P E+ + LD+++I Q +AK +A + + R + + Sbjct: 56 KIRFDMKPEELEAYLDQFVIRQDEAKAVLATKISTHYNRIRFQRRRSRYGVENPVGRIKN 115 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE ++R+LV Sbjct: 116 NILLIGPTGVGKTYLVKLIAQKIGVPFVKGDATKFSETGYVGGDVEDLVRELV 168 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 95/221 (42%), Gaps = 65/221 (29%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------ 289 D I++ E YGI+++DE DKI + + G VSR GVQR LL +E + V K Sbjct: 173 DDIELAE-YGIIYVDEVDKIASSNHYIGPDVSRTGVQRALLKPMEETDVDLKVPHDPVSQ 231 Query: 290 ----------------SINTDHILFIASGAFH---------------------------- 305 ++NT +ILFI SGAF+ Sbjct: 232 IQAIEQYRKTGKREKRTVNTRNILFIMSGAFNGLAAIAKKRMQKQGIGFGAQIQSREDDT 291 Query: 306 ----VSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 ++ DL+ E GR PV L+ L D IL + + +I KE ++ Sbjct: 292 KYLRHAKAEDLIEYGFESEFVGRLPVVAVLEPLEVEDLYQILKNVRNPIIQGKKEDFRSY 351 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 GI + F +D++ LA+ A + GAR L +V+E+VL Sbjct: 352 GIDIKFEDDALRLLAEKAFEEKT-----GARGLVSVIEKVL 387 >gi|291517939|emb|CBK73160.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio fibrisolvens 16/4] Length = 275 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 64/111 (57%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P +I + LD Y++GQ AK+ +++A+ N ++R E+ N+L++GPTG GKT Sbjct: 144 PHKIKAMLDDYVVGQDYAKKVMSVAVYNHYKRVATGTMDDIEIEKSNMLMLGPTGSGKTY 203 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + R LA+L P + T TE GY+G ++E ++ L+ A N V ++ Sbjct: 204 LVRTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAAGNDVERCQQ 254 >gi|170597016|ref|XP_001902980.1| ATP-dependent Clp protease, ATP-binding subunit [Brugia malayi] gi|158588999|gb|EDP28174.1| ATP-dependent Clp protease, ATP-binding subunit, putative [Brugia malayi] Length = 571 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 69/240 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK-----------YGS 290 GIVFLDE DKI A + VS EGVQ LL LVEG+ V+ K + Sbjct: 322 GIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQ 381 Query: 291 INTDHILFIASGAFH------------------------------------------VSR 308 ++T ILF+ASGAF + R Sbjct: 382 VDTTDILFVASGAFTALDRIVGKRLDKKTLGLGAKSGMQRITDDDKLEAAISKKRDDLLR 441 Query: 309 PAD--------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 AD ++PE+ GRFPV V SL+K +LT+ ++L+ Q K +G L Sbjct: 442 QADQGDLISFGIVPELVGRFPVIVPFHSLDKGMLVRVLTEPTNSLLAQKKLEFAMDGADL 501 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 F+ D++D +A +A+ + GAR L++++E+VL + F+ ++V I+ E V+ Sbjct: 502 SFSSDALDEIAALALERKT-----GARALRSIVEKVLLEAKFTVPGSDIESVHINRECVQ 556 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 41/65 (63%) Query: 46 DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105 D+ L NILL+GP+GVGKT I++ LAR+ P + T T+ GYVG +VE +++ Sbjct: 248 DVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDVESVVQK 307 Query: 106 LVDVA 110 LV A Sbjct: 308 LVQNA 312 >gi|78777661|ref|YP_393976.1| ATP-dependent protease ATP-binding subunit [Sulfurimonas denitrificans DSM 1251] gi|78498201|gb|ABB44741.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Sulfurimonas denitrificans DSM 1251] Length = 414 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQLPADLRDELMPKNILLVGPTG 63 +P+E+ L YIIGQ+ A++ +++A+ N ++R D E+ N+LL+GPTG Sbjct: 62 MTPKELNLFLADYIIGQERARKLLSVAVYNHYKRIFKTHTTKDDDTEIAKSNVLLIGPTG 121 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 GKT +++ +AR+ P + T TE GYVG +VE I+ L+ A V ++R Sbjct: 122 SGKTLMAQTIARVLNVPIAIADATSLTEAGYVGEDVENILTKLLQAADGDVERAQR 177 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GIVF+DE DKI I VS EGVQ+ LL ++EG+ V+ ++ +I Sbjct: 178 GIVFIDEIDKISRMSENRSITRDVSGEGVQQALLKIIEGAVVNIPPKGGRKHPNQEFIAI 237 Query: 292 NTDHILFIASGAF-------------------HVSR-------------PADL-----LP 314 +T ILFI GAF H + P DL +P Sbjct: 238 DTTGILFICGGAFDGLDEILKKKQGENVLGFGHEKKSKKEQKMSYDAVEPDDLVNYGLIP 297 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ L + + D ILT+ ++++I QYK+L + + L+F ED++ A+A + Sbjct: 298 ELVGRLPIIASLNEITEDDMVRILTEPKNSIIKQYKKLFSIDNVELNFEEDALRAIATKS 357 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L+ ++E + DI + Sbjct: 358 IKRKT-----GARGLRAILEENMIDIMY 380 >gi|296274531|ref|YP_003657162.1| sigma 54 interacting domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098705|gb|ADG94655.1| Sigma 54 interacting domain protein [Arcobacter nitrofigilis DSM 7299] Length = 407 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 6/107 (5%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRW----RRQQLPADLRDELMPKNILLVGPTG 63 +P E+ + LD Y++GQ AK+ +++A+ N + RR ++ D E+ N+LL+GPTG Sbjct: 65 TPSELKALLDDYVVGQHRAKKVLSVAVYNHYKRIFRRDEIGEDT--EINKSNVLLIGPTG 122 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +AR P + T TE GYVG +VE +I L+ A Sbjct: 123 SGKTLLAQTIARYLDVPLAIADATSLTEAGYVGDDVENVITRLLQAA 169 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+F+DE DKI I VS EGVQ+ +L ++EGS +V K G + Sbjct: 179 GIIFIDEIDKIARMSENRSITRDVSGEGVQQAMLKIIEGSVVNVPPKGGRKHPGQDMTQV 238 Query: 292 NTDHILFIASGAFH-----VSRP--------------------------AD------LLP 314 +T +ILFI GAF + R AD L+P Sbjct: 239 DTTNILFICGGAFDGLEEIIKRKKGNNILGFNQVKNSKKDEAGLISFVEADDLVKYGLIP 298 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR + L + + D ILT+ ++ LI QY +L + + + L+F +D++ A+A A Sbjct: 299 ELIGRLHMIATLNEITEDDMVHILTEPKNALIKQYIKLFEMDKVNLEFDKDALLAIAKKA 358 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L++++E ++ DI F + +EKT+ I + V Sbjct: 359 IERKT-----GARGLRSILEDIMLDIMFDLPNYKEKTITITKDVV 398 >gi|218461293|ref|ZP_03501384.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Kim 5] Length = 333 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 58/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 89 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKVMEGTVASVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 149 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 208 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ +A Sbjct: 209 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 268 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 A+ V GAR L+++ME++L D F L+ + VVI E VR Sbjct: 269 KAI-----VRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISEEVVR 312 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NI+LVGPTG GKT +++ LAR+ PF + T TE GYVG +VE II L+ Sbjct: 19 ELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQA 78 Query: 110 A-INIVRESR 118 A N+ R R Sbjct: 79 ADYNVERAQR 88 >gi|312072918|ref|XP_003139285.1| ATP-dependent Clp protease [Loa loa] gi|307765553|gb|EFO24787.1| ATP-dependent Clp protease [Loa loa] Length = 570 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 69/240 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK-----------YGS 290 GIVFLDE DKI A + VS EGVQ LL LVEG+ V+ K + Sbjct: 320 GIVFLDEIDKIAAAHNVQSHAFRDVSGEGVQHALLKLVEGTLVNVKSSRKSMSTQQDFVQ 379 Query: 291 INTDHILFIASGAF------------------------------------------HVSR 308 ++T ILF+ASGAF + R Sbjct: 380 VDTTDILFVASGAFTALDRIVGKRLDKKTLGLGARSGVQRITDDDKLEAAISKKRDDLLR 439 Query: 309 PAD--------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 AD ++PE+ GRFPV V SL+K +LT+ ++L+ Q K +G L Sbjct: 440 QADQGDLISFGIVPELVGRFPVIVPFHSLDKGMLIRVLTEPRNSLLAQKKLEFAMDGADL 499 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 F+ D++D +A +A+ + GAR L++++E+VL + F+ ++V I+ E V+ Sbjct: 500 SFSSDALDEIAALALERKT-----GARALRSIVEKVLLEAKFTVPGSDIESVHINRECVK 554 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 41/65 (63%) Query: 46 DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105 D+ L NILL+GP+GVGKT I++ LAR+ P + T T+ GYVG +VE +++ Sbjct: 246 DVPIRLEKSNILLLGPSGVGKTFITQTLARILDVPIALCDCTSMTQAGYVGEDVESVVQK 305 Query: 106 LVDVA 110 LV A Sbjct: 306 LVQNA 310 >gi|151946612|gb|EDN64834.1| ATP-binding protein [Saccharomyces cerevisiae YJM789] Length = 520 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 110/487 (22%), Positives = 201/487 (41%), Gaps = 142/487 (29%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRW-------------RRQQLP-----ADLRD 49 +P+ + LD YI+GQ+ K+ +++A+ N + R+++L AD RD Sbjct: 38 TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDRD 97 Query: 50 E--------------------------------LMPKNILLVGPTGVGKTAISRRLARLA 77 E L N+L+VGP+G GKT ++ LA++ Sbjct: 98 EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137 P + T+ T+ GY+G +VE I L+ +NAE + A Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCIERLL--------------------VNAEFDVARA 197 Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196 G I EID ++A ++ I D+ G G +L + E Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236 Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256 K+ ++V++ ++ + D + T +D + +V+ I+F+ Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278 Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301 G +G+ + V+R D+ + + G SV + K+ NT + + + Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335 Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 G A ++ P DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 K G+ L T+ ++ +A A+ + GAR L+ +MER+L ++++ V Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450 Query: 413 VIDAEYV 419 +ID V Sbjct: 451 LIDEATV 457 >gi|27374380|gb|AAO01118.1| CG4538-PA [Drosophila pseudoobscura] Length = 666 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 85/250 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 382 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 435 Query: 287 KYGSINTDHILFIASGAF----------------------------------HVSRPAD- 311 + ++T +ILF+ASGA+ V+ P D Sbjct: 436 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSSSSGSGNRRAVQSVAAPMDN 495 Query: 312 ---------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYK 350 ++PE GRFPV V SLN S ILT+ + L+ QYK Sbjct: 496 DQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYK 555 Query: 351 ELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK 410 L+ + + L F ED+++++A +A+ ++ GAR L+++ME++L D F + Sbjct: 556 ALLGLDDVDLTFDEDAVESIAKLAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIR 610 Query: 411 TVVIDAEYVR 420 V I E VR Sbjct: 611 GVHITGECVR 620 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 312 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 371 Query: 109 VAINIVR 115 N+ R Sbjct: 372 ANYNVDR 378 >gi|47847699|dbj|BAD21479.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) [Oryza sativa Japonica Group] Length = 554 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 18/118 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL-------PADLRD----------- 49 +P+EI LD+++IGQ+ AK+ +++A+ N ++R D + Sbjct: 149 TPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSCASDTDGV 208 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL NIL++GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ Sbjct: 209 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 266 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + G+ I Sbjct: 279 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 338 Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308 +T +ILFI GAF H S Sbjct: 339 DTKNILFICGGAFVDLEKTISERRHDSSIGFQAPIRSNMRTGGVINAEITSSLLESVESG 398 Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L SL++ +LT ++ L QY +L + + L FTE Sbjct: 399 DLIAYGLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEK 458 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++ A+ N+ GAR L++++E +L + + +++ IDA Sbjct: 459 ALRLISKRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 504 >gi|71982908|ref|NP_001021077.1| hypothetical protein D2030.2 [Caenorhabditis elegans] gi|33589133|emb|CAE45047.1| C. elegans protein D2030.2b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 470 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A G+ VS EGVQ LL LVEG+ V+ K G Sbjct: 208 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 267 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T ILFIASGAF V R D Sbjct: 268 IDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLSK 327 Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 ++PE+ GRFPV V S +K ++T+ +++L+ Q K + + L Sbjct: 328 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 387 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 F+ ++++ +A +A++ + GAR L++++E L + F+ Sbjct: 388 FSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFT 424 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 N+LLVGP+GVGKT +++ LAR+ P + T T+ GYVG +VE +I+ LV A V Sbjct: 143 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 202 Query: 115 RESRR 119 ++++ Sbjct: 203 EKAQQ 207 >gi|71982905|ref|NP_001021076.1| hypothetical protein D2030.2 [Caenorhabditis elegans] gi|3875395|emb|CAA98115.1| C. elegans protein D2030.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 586 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 68/222 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A G+ VS EGVQ LL LVEG+ V+ K G Sbjct: 324 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 383 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T ILFIASGAF V R D Sbjct: 384 IDTTDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLSK 443 Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 ++PE+ GRFPV V S +K ++T+ +++L+ Q K + + L Sbjct: 444 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 503 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 F+ ++++ +A +A++ + GAR L++++E L + F+ Sbjct: 504 FSAEALEQVAQLALDRKT-----GARALRSILEAALLEAKFT 540 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 N+LLVGP+GVGKT +++ LAR+ P + T T+ GYVG +VE +I+ LV A V Sbjct: 259 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 318 Query: 115 RESRR 119 ++++ Sbjct: 319 EKAQQ 323 >gi|27374282|gb|AAO01037.1| CG4538-PA [Drosophila virilis] Length = 689 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 85/250 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 403 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 456 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P D Sbjct: 457 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPSTSGSGRRAAQSTASPMDNDQ 516 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 ++PE GRFPV V SLN + ILT+ + L+ QYK L Sbjct: 517 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVNMLVRILTEPRNALVPQYKAL 576 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM--ERVLEDISFSASDLQEK 410 + + + L FTED+++++A +A+ ++ GAR L+++M E +L D F + Sbjct: 577 LGLDEVDLSFTEDAVESIATLAMERHT-----GARGLRSIMLQETLLLDPMFIVPGSDIR 631 Query: 411 TVVIDAEYVR 420 V I AEYVR Sbjct: 632 GVHITAEYVR 641 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ A Sbjct: 338 NIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQDA 393 >gi|182414556|ref|YP_001819622.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus terrae PB90-1] gi|177841770|gb|ACB76022.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutus terrae PB90-1] Length = 431 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 13/115 (11%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR------------QQLPADLRD-ELMPKN 55 P EI LD ++IGQ AK+ +++A+ N ++R L + D E+ N Sbjct: 63 PSEIKKTLDDFVIGQDHAKKVLSVAVYNHYKRLMFDSGQPGKDSMALSPEFNDVEVEKSN 122 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ILLVGPTG GKT ++R LAR+ PF + T TE GYVG +VE ++ L+ A Sbjct: 123 ILLVGPTGSGKTLLARTLARILDVPFAISDATTLTEAGYVGEDVENVVLRLLQNA 177 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 65/232 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG++ + +Y I Sbjct: 187 GIIYIDEIDKIGRKTENVSITRDVSGEGVQQALLKILEGTTCNVPPQGGRKHPNQEYVQI 246 Query: 292 NTDHILFIASGAF------------HVS-----------------------RPADLL--- 313 NT +ILF+ GAF H S P DL+ Sbjct: 247 NTSNILFVCGGAFVGLDGIVQRRLGHRSLGFSSIQAQQDAAMKPEQMMKSIAPEDLIRFG 306 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L+ D +L T++ ++ QY +L +G+ L T D+I A+A Sbjct: 307 MIPEFIGRLPVVSVLDELSVEDLEKVLLRTKNAMVKQYSKLFAMDGVRLRLTTDAIHAIA 366 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK----TVVIDAEYV 419 A+ L + GAR L++++E ++ ++ + DL ++ V IDA V Sbjct: 367 RKALELKT-----GARALRSILENLMLEVMY---DLPQRDDVAEVTIDAGVV 410 >gi|85859381|ref|YP_461583.1| ATP-dependent protease ATP-binding subunit ClpX [Syntrophus aciditrophicus SB] gi|85722472|gb|ABC77415.1| ATP-dependent clp protease ATP-binding subunit [Syntrophus aciditrophicus SB] Length = 420 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 60/229 (26%) Query: 245 GIVFLDEFDKIVARDSGNGI---GVSREGVQRDLLPLVEGS--SVSTKYG---------S 290 GIV++DE DKI A+ SGN VS EGVQ+ LL ++EG+ ++ K G Sbjct: 181 GIVYIDEIDKI-AKKSGNPSITRDVSGEGVQQALLKIIEGTLANIPPKGGRKHPQQEFIQ 239 Query: 291 INTDHILFIASGAFH----------------------------------VSRPADLL--- 313 ++T ILFI GAF+ +P DLL Sbjct: 240 VDTTGILFICGGAFNDLPDIIMKRTGVNAMGFGADIKGKQDRKIGELLSEVQPEDLLKCG 299 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE GR PV L L++ D IL D + +++ QY + + E + L FT+ ++ A+A Sbjct: 300 LIPEFVGRLPVIAPLSELDEDDLVKILVDPKDSIVKQYTKAFELENVKLRFTDSALRAVA 359 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +AV+ S GAR L+ ++E + DI + Q+ + VI+ + V Sbjct: 360 KLAVDRKS-----GARGLRAILENAMLDIMYDIPSRQDVRECVINEDVV 403 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKT 67 PR I LD+Y++GQ+ K+ +++A+ N ++R AD E+ N+LL+GPTG GKT Sbjct: 69 PRIIKEFLDQYVVGQERPKKVLSVAVYNHYKRLSAHADSDGVEMQKSNVLLIGPTGSGKT 128 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LA+L PF + T TE GYVG +VE II L+ A Sbjct: 129 LLAKTLAKLLNVPFTIADATTLTEAGYVGEDVENIILSLLQNA 171 >gi|134055137|emb|CAK37083.1| unnamed protein product [Aspergillus niger] Length = 557 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/322 (26%), Positives = 130/322 (40%), Gaps = 92/322 (28%) Query: 171 DTSSDI----SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDR 226 D SS++ SN + G + VG +++ ++++ + S+ C P Sbjct: 176 DDSSELQLEKSNILLLGPSGVGKTLMAKTLARILS------VPFSISDCTPFTQAGYIGE 229 Query: 227 LIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLV 279 ++ VHR + NY GI+ LDE DKI A +G VS EGVQ+ LL L+ Sbjct: 230 DAEV-CVHR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKLI 286 Query: 280 EGSSVSTKYG----------SINTDHILFIASGAF---------HVSR------------ 308 EG++V + ++ TD+ILFI SGAF +SR Sbjct: 287 EGTTVQVQAKQERSAPREVYNVRTDNILFIFSGAFVGLHKVIMDRISRGSIGFGQPVRAL 346 Query: 309 -------------------------------PADL-----LPEIQGRFPVRVHLKSLNKS 332 P DL +PE+ GR PV L +L Sbjct: 347 YKKHLPFFTSATSPNSPDSEPTYFNALDLLNPTDLQNYGFIPELVGRVPVTAALSTLTTP 406 Query: 333 DFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTV 392 ILT+ ++L+ QY L GI + FT ++ +A A + + GAR L+T Sbjct: 407 LLVRILTEPRNSLLAQYTTLFSLSGIEIRFTTPALHKIAANAFTMGT-----GARALRTE 461 Query: 393 MERVLEDISFSASDLQEKTVVI 414 +E +L D F K V++ Sbjct: 462 LETILSDAMFETPGSSVKFVLV 483 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 54/166 (32%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRN--------------------RWRRQQ----- 42 +PR + LD++++GQ AK+ +++A+ N +W R++ Sbjct: 86 TPRTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLAKWARREAIEHH 145 Query: 43 ---------------------LPADLRD--------ELMPKNILLVGPTGVGKTAISRRL 73 LP + +L NILL+GP+GVGKT +++ L Sbjct: 146 PVEDEFPGQQQTVNTTPEIGTLPTSAQPGLDDSSELQLEKSNILLLGPSGVGKTLMAKTL 205 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 AR+ PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 206 ARILSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 251 >gi|167766383|ref|ZP_02438436.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1] gi|167711974|gb|EDS22553.1| hypothetical protein CLOSS21_00887 [Clostridium sp. SS2/1] Length = 333 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 60/228 (26%) Query: 243 NYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYG 289 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ Sbjct: 76 QCGIIYIDEIDKITRKSENTSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPHQEFI 135 Query: 290 SINTDHILFIASGAFH------VSR----------------------------PAD---- 311 I+T +ILFI GAF SR P D Sbjct: 136 QIDTSNILFICGGAFDGLEKIIESRIGKKSIGFGADVFGQKETDLGELLRQVLPEDFVKF 195 Query: 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 L+PE GR PV V L L++ IL + +S L+ QY+ L + +G+ L F +D++ A+ Sbjct: 196 GLIPEFIGRVPVNVSLNPLDEEALVRILKEPKSALVKQYQRLFEMDGVKLTFDDDALIAI 255 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A A+ + GAR L+ +ME V+ D+ + S +D+ E + D Sbjct: 256 AKKALERKT-----GARGLRAIMEDVIMDLMYEIPSQTDVSECLITKD 298 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NIL++GPTG GKT +++ LA++ PF + T TE GYVG +VE I+ ++ Sbjct: 8 ELQKSNILMLGPTGSGKTLLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKIIQA 67 Query: 110 A 110 A Sbjct: 68 A 68 >gi|313667283|ref|YP_004049684.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus profundus DSM 14977] gi|313153914|gb|ADR37764.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Oceanithermus profundus DSM 14977] Length = 406 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 5/103 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 PREI ELDR + GQ+ AKRA+++A R + P +L N+LLVGP+G GKT Sbjct: 63 PPREIKQELDRRVAGQERAKRALSVAFATHALRFKNP-----DLPKANVLLVGPSGTGKT 117 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + + AR+AG P + T T+ GYVG +VE ++ L+ A Sbjct: 118 LLVKEAARVAGLPVAIADATSLTQAGYVGDDVESVLTRLLATA 160 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 53/211 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG--------- 289 G++F+DE DKI AR G ++R EGVQ+ LL LVEG+ +V K G Sbjct: 170 GVIFVDEVDKI-ARKGGENPSITRDVSGEGVQQALLKLVEGTVANVPFKEGRKHPGEDTV 228 Query: 290 SINTDHILFIASGAFH---------VSRPA-------------------------DLLPE 315 + TD IL+I +GAF RP L+PE Sbjct: 229 QMKTDGILWIFAGAFEGLEMILEERKGRPGIGFGADTPEPDETLPEVTHEDLIRYGLIPE 288 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 GR P V L L+ R I+ + E++ + +Y+ + G+ L+ +E +D + ++ Sbjct: 289 FMGRVPQLVRLDPLDGDTLRRIVAEVENSYLERYRRIFDAYGVRLEMSEAFVDEVVRRSL 348 Query: 376 NLNSTVGDIGARRLQTVMERVLEDISFSASD 406 + G R Q V+E ++ ++ F D Sbjct: 349 KNHRRA---GGRAPQAVLEPIVHELLFHLPD 376 >gi|224120816|ref|XP_002318424.1| predicted protein [Populus trichocarpa] gi|222859097|gb|EEE96644.1| predicted protein [Populus trichocarpa] Length = 427 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST------KYG-----SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ V+ K+ I Sbjct: 164 GIIYIDEVDKITKKAESVNISRDVSGEGVQQALLKMLEGTVVNVPDKEARKHPRGDNIQI 223 Query: 292 NTDHILFIASGAF-----------------------------------------HVSRPA 310 NT ILFI GAF + + Sbjct: 224 NTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSAAMTSSLLETAESS 283 Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DL +PE GRFP+ V L +L + +LT+ ++ L QY++L + G+ L TE Sbjct: 284 DLVSYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKLFQMNGVKLHVTEH 343 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++A A+ N+ GAR L++++E +L D + D++ +IDA Sbjct: 344 ALRSIAIKAITKNT-----GARALRSILENILMDSMYEIPDVRRGADIIDA 389 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 41/150 (27%) Query: 2 KLTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----------------- 43 KL +F +P++I LD+++IGQQ AK+ +++A+ N ++R L Sbjct: 5 KLGSSFPTPKDICKALDKFVIGQQRAKKVLSVAVYNHYKRIHLESVKKWSVLFLSMALVN 64 Query: 44 ---------------PADLRDELM--------PKNILLVGPTGVGKTAISRRLARLAGAP 80 P + + E M NILL+GPTG GKT +++ LAR P Sbjct: 65 PFFPFPVTVMVCLYFPCNEKAETMDEEEVELEKSNILLMGPTGSGKTLLAKTLARFVNVP 124 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F+ + T T+ YVG +VE ++ L+ A Sbjct: 125 FVIADATTLTQARYVGEDVESMLYKLLTAA 154 >gi|308459430|ref|XP_003092035.1| hypothetical protein CRE_23158 [Caenorhabditis remanei] gi|308254453|gb|EFO98405.1| hypothetical protein CRE_23158 [Caenorhabditis remanei] Length = 638 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 68/222 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYG-----------S 290 GIVFLDE DKI A G+ VS EGVQ LL LVEG+ V+ K G Sbjct: 371 GIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEGTVVNVKSGKKGMGSQQDQVQ 430 Query: 291 INTDHILFIASGAF----------------------------------HVSRPAD----- 311 I+T ILFIASGAF V R D Sbjct: 431 IDTSDILFIASGAFSNLDKIVGRRLDKKALGFGTSSGNVRISGDDSNSEVMRKRDELLGK 490 Query: 312 ----------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 ++PE+ GRFPV V S +K ++T+ +++L+ Q K + + L Sbjct: 491 ADQGDLISFGMVPELVGRFPVLVPFHSFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLS 550 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 F+ ++++ +A +A+ + GAR L++++E L + F+ Sbjct: 551 FSAEALEQVAQLALERKT-----GARALRSILEAALLEAKFT 587 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILLVGP+GVGKT +++ LAR+ P + T T+ GYVG +VE +I+ LV A V Sbjct: 306 NILLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKLVQAAGGNV 365 Query: 115 RESRR 119 ++++ Sbjct: 366 EKAQQ 370 >gi|12322385|gb|AAG51217.1|AC051630_14 CLP protease regulatory subunit CLPX, putative; 15869-19379 [Arabidopsis thaliana] Length = 670 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 38/141 (26%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40 +P+EI LD+++IGQ AK+ +++A+ N ++R Sbjct: 251 TPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGLLHDSDALSPFNPLWFTL 310 Query: 41 -----------QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89 Q + D EL N+LL+GPTG GKT +++ LARL PF+ + T Sbjct: 311 ILWTLNPRSAAQPIDDDDNVELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTL 370 Query: 90 TEIGYVGRNVEQIIRDLVDVA 110 T+ GYVG +VE I+ L+ VA Sbjct: 371 TQAGYVGDDVESILHKLLTVA 391 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 65/244 (26%) Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-- 287 TV ++Q + GIV++DE DKI + I VS EGVQ+ LL L+EG+ V+ Sbjct: 389 TVAEFNVQAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGK 447 Query: 288 ---------YGSINTDHILFIASGAFH------VSRPAD--------------------- 311 + I+T ILFI GAF V R D Sbjct: 448 GARKHPRGDHIQIDTKDILFICGGAFVDLEKTIVDRRQDSSIGFGAPVRANMATSGVTSG 507 Query: 312 -------------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L+PE GRFP+ V L +L + +L + ++ L QYK+L Sbjct: 508 AITSSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKL 567 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + L FTE +++ ++ A+ V + GAR L+ ++E +L + F D ++ Sbjct: 568 FSMNNVKLHFTEKALEIISKQAM-----VKNTGARGLRALLESILTEAMFEIPDDKKGDE 622 Query: 413 VIDA 416 IDA Sbjct: 623 RIDA 626 >gi|219116376|ref|XP_002178983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409750|gb|EEC49681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 340 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 64/233 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK-----------YG 289 GIV++DE DKI R SG + +SR EGVQ LL +VEG+ ++ + Sbjct: 107 GIVYIDEADKI--RKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKEPGRKNPRGDFL 164 Query: 290 SINTDHILFIASGAFH-----VSR-------------------------------PADL- 312 I+T +ILFI GAF ++R P DL Sbjct: 165 QIDTTNILFICGGAFSGLERIINRRMDAASIGFGAQMKKAIDDPKVQGRYFDSAIPKDLV 224 Query: 313 ----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 +PE GRFPV V K L+K + ILT ++++ QY+ L + + T++ +D Sbjct: 225 EYGMIPEFVGRFPVIVATKGLDKKNLIDILTVPRNSIMKQYRRLFAMDDVNFHVTKEGLD 284 Query: 369 ALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYVR 420 +A+ A+ + GAR L+++ + VL + + + + TV +DA VR Sbjct: 285 EIAETALGRGT-----GARGLRSITDSVLMETQYVVPSMPDVHTVYVDASAVR 332 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 8/99 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 +PREI+ L+ Y+IGQ++ K A+++ + N ++ E+ NILL+GP+G GKT Sbjct: 3 TPREIMKGLNEYVIGQKNVKVALSVGVYNHYKHC--------EIDKSNILLLGPSGSGKT 54 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 + + LARL P + + T T+ GYVG +VE I+ L Sbjct: 55 LLVKTLARLIDVPLVIADATCLTQAGYVGEDVESILFKL 93 >gi|268565751|ref|XP_002639538.1| Hypothetical protein CBG04167 [Caenorhabditis briggsae] Length = 517 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 78/246 (31%) Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292 GIVFLDEFDKI SGN VS +GVQ+ LL LVEGS V + +I+ Sbjct: 263 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 321 Query: 293 TDHILFI------------------------ASGAFH------------------VSRPA 310 T +ILFI +S + H VS+ Sbjct: 322 TTNILFISSGAFSNIEHIVARRLDKRSLGFSSSASPHEYNDQHTTEKLMDSDEENVSKAR 381 Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 D ++PE+ GRFPV V L+KS + +LT+ + +L+ Q K+ + Sbjct: 382 DEMLVQCDQGDLISFGMIPELVGRFPVIVPFHCLDKSHLKAVLTEPKGSLVAQTKKFFEN 441 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414 E + L F+ +ID +AD+AV + GAR L++++E+ + + + SD+ K V I Sbjct: 442 ENVKLTFSPAAIDKIADMAVKRKT-----GARALKSIVEKAVMNAKYEPGSDV--KCVEI 494 Query: 415 DAEYVR 420 + E ++ Sbjct: 495 NDENLK 500 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 52/150 (34%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------Q 41 P+EIV L++Y++GQ+ AK+ +A+A+ +RR + Sbjct: 102 PKEIVEHLNKYVVGQETAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKLRK 161 Query: 42 QLPADLRDELMPK------------------------NILLVGPTGVGKTAISRRLARLA 77 Q P ++ +E +P+ N++L+G +G GKT ++++LA + Sbjct: 162 QNP-EIEEEYLPEYIEKSQRQVLKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVL 220 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 P + + T T+ GYVG +V+ +++ L+ Sbjct: 221 DVPIVICDCTTLTQAGYVGDDVDTVVQKLL 250 >gi|229826183|ref|ZP_04452252.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC 49176] gi|229789053|gb|EEP25167.1| hypothetical protein GCWU000182_01555 [Abiotrophia defectiva ATCC 49176] Length = 503 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 15/174 (8%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---LMPKNILLVGPTGV 64 +P I +LD Y+IGQ+ AK+ +++A+ N ++R ++E + N+L++GPTG Sbjct: 156 APHIIKEKLDEYVIGQELAKKQISVAVYNHYKRISAEKTKKEEDIEIEKSNMLMIGPTGS 215 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVRE 124 GKT + + LARL P + T TE GY+G +VE ++ L+ A N V E E Sbjct: 216 GKTYLVKNLARLLQVPIAITDATTLTEAGYIGDDVESVLSKLLADADNDV------EAAE 269 Query: 125 QASINAEERILDALVGKTATSNTREVFRKKLRDGEIS---DKEIDIEVADTSSD 175 + +E +D + K +++R+V + ++ G + E++I V TS + Sbjct: 270 HGIVFIDE--IDK-IAKKKNTHSRDVSGEAVQQGLLKLLEGSEVEIPVGATSKN 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 56/227 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GIVF+DE DKI + + + VS E VQ+ LL L+EGS V G +IN Sbjct: 270 HGIVFIDEIDKIAKKKNTHSRDVSGEAVQQGLLKLLEGSEVEIPVGATSKNAMVPMTTIN 329 Query: 293 TDHILFIASGAF-----------------------------------HVS----RPADLL 313 T +ILFI GAF V+ R ++ Sbjct: 330 TRNILFICGGAFPDLSDIVKRRLNKQAAIGFKSDLKDKYDDEKNILSKVTTEDLRQYGMI 389 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ + L+K +L++ ++ ++ QY++L++ + + L+F+ED+ + +A+ Sbjct: 390 PEFLGRLPIVCAVDELDKDMLIKVLSEPKNAILKQYEKLLEFDEVKLEFSEDAKEIIAER 449 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A+ + GAR L+ ++E + DI + D V+I +Y+ Sbjct: 450 ALERKT-----GARALRAIIEEFMLDIMYEIPKDNNIGKVIITRDYI 491 >gi|148977243|ref|ZP_01813870.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] gi|145963525|gb|EDK28788.1| ATP-dependent protease ATP-binding subunit [Vibrionales bacterium SWAT-3] Length = 80 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/78 (48%), Positives = 54/78 (69%) Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++FTED I+ +AD A +N T +IGARRL TVMER++++ISF A+D T+VID YV Sbjct: 3 IEFTEDGINQIADAAWRVNETTENIGARRLHTVMERLMDEISFDATDKAGSTLVIDEAYV 62 Query: 420 RLHIGDFPSETDMYHFIL 437 +G+F + D+ FIL Sbjct: 63 NSKLGEFVEDEDLSRFIL 80 >gi|93007059|ref|YP_581496.1| ATP-dependent protease ATP-binding subunit [Psychrobacter cryohalolentis K5] gi|122414802|sp|Q1Q8J1|CLPX_PSYCK RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|92394737|gb|ABE76012.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Psychrobacter cryohalolentis K5] Length = 424 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 14/114 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD--------------ELMP 53 +P+E+ ++LD Y+IGQ AK+A+A+A+ N ++R ++ L + EL Sbjct: 66 TPKELRAKLDEYVIGQDAAKKALAVAVYNHYKRLKVSQILANDSKKAKIGADDAMVELAK 125 Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTG GKT +++ LARL PF + T TE GYVG +VE I++ L+ Sbjct: 126 SNILLIGPTGSGKTLLAQTLARLLDVPFAMADATTLTEAGYVGEDVENIVQKLL 179 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 59/229 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GI+++DE DKI + I VS EGVQ+ LL L+EG+ + +G + Sbjct: 192 GIIYIDEIDKISKKGDNPSITRDVSGEGVQQALLKLIEGTVAAIPPHGGRKHPQQELIQV 251 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADLL--- 313 +T +IL I GAF P DL+ Sbjct: 252 DTSNILIIVGGAFAGLDKVIQQRTEKTGIGFNADVSSKDDSRRSSELLQQVEPEDLIKFG 311 Query: 314 --PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 PE+ GR PV L L++ ILT+ ++ L+ QYK L EG + FT++++DA+A Sbjct: 312 LIPELIGRLPVLAALTELDEDALVQILTEPKNALVKQYKYLFDMEGADITFTKEALDAIA 371 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L++++E L + + +++ KTV++D + + Sbjct: 372 KKAMARKT-----GARGLRSIVENALLETMYELPSMKDAKTVLVDEQVI 415 >gi|58699948|ref|ZP_00374530.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] gi|58533534|gb|EAL57951.1| heat shock protein HslVU, ATPase subunit HslU [Wolbachia endosymbiont of Drosophila ananassae] Length = 45 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/45 (73%), Positives = 42/45 (93%) Query: 271 VQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPE 315 +QRDLLPL+EG++V+TKYG + TD+ILFIASGAFH S+P+DLLPE Sbjct: 1 MQRDLLPLLEGTTVTTKYGHVKTDYILFIASGAFHQSKPSDLLPE 45 >gi|72383093|ref|YP_292448.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. NATL2A] gi|124026831|ref|YP_001015946.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus str. NATL1A] gi|123759843|sp|Q46ID3|CLPX_PROMT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166214801|sp|A2C5C2|CLPX_PROM1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72002943|gb|AAZ58745.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prochlorococcus marinus str. NATL2A] gi|123961899|gb|ABM76682.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. NATL1A] Length = 451 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P EI LD ++GQ+ AK+ +++A+ N ++R D E L NILL+GP Sbjct: 83 PIEIKKFLDAQVVGQEPAKKILSVAVYNHYKRLAWKGDGSGETDLTATKLQKSNILLIGP 142 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA + PF + T TE GYVG +VE I+ L+ A Sbjct: 143 TGCGKTLLAQTLAEMLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 191 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK--------YG---SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ + YG I Sbjct: 201 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYGDSIQI 260 Query: 292 NTDHILFIASGAF---------------------------------------HVSRPADL 312 +T ILFI GAF + P DL Sbjct: 261 DTSQILFICGGAFVGLDDVVEKRLGKNSIGFIQNENRTRTKSNRDRVGADLINDLEPDDL 320 Query: 313 -----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 +PE GR PV L+ LN ILT+ L+ Q++ L+ + + L F ED++ Sbjct: 321 VKYGLIPEFIGRMPVSAILEPLNAKALESILTEPRDALVKQFRTLLSMDNVELSFDEDAV 380 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A A + GAR L+ ++E ++ D+ +S Sbjct: 381 EAIAQEAYKRKT-----GARALRGIVEEIMLDLMYS 411 >gi|291525663|emb|CBK91250.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Eubacterium rectale DSM 17629] Length = 509 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DK+ + + N VS E VQ+ +L L+EGS V G +++ Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ +I QY++L++ + + L+F +D++ A+A + Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L+ ++E + DI + D TV I +YV Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYVE 488 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49 +P I + LD Y++GQ+ AK+ +++A+ N ++R + AD + Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195 Query: 50 -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 E+ N+L++GPTG GKT + + LA+L P + T TE GY+G ++E ++ L+ Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255 Query: 109 VAINIVRESRR 119 A N V + Sbjct: 256 AADNDVERAEH 266 >gi|326504532|dbj|BAJ91098.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 491 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 20/120 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRD---------E 50 +EI LD+Y++GQ AK+ + +A+ N ++R Q A RD E Sbjct: 47 KEIRRGLDQYVVGQDKAKKVLCVAVHNHYKRIYSEPSNKSSSQASAG-RDAGTAAEDDTE 105 Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L NILL+GPTG GKT +++ LAR A PF+ + T T+ GY G +VE I+ L+ A Sbjct: 106 LEKSNILLLGPTGSGKTLLAKTLARFANVPFVIADATAVTQAGYSGEDVESIVYKLLVAA 165 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 76/236 (32%) Query: 245 GIVFLDEFDKIVARDSGNGIG-------VSREGVQRDLLPLVEGSSVST---------KY 288 GI+++DE DK+ + +G VS EGVQ+ LL + EG+ +S + Sbjct: 175 GIIYIDEVDKLAKK-----VGCQEDRRDVSGEGVQQALLKMFEGTVISVPRKRSQNGLSH 229 Query: 289 GSINTD--HILFIASGAF-----------------------HVSRPADLL---------- 313 G + D +ILFI GAF H R L+ Sbjct: 230 GCVEVDTTNILFICGGAFSDLGKIISERLHHCPFGFGTPIRHELRDYALMNEQSSLFEEI 289 Query: 314 -----------PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDF 362 PE GR P+ V L L + ++ + ++ + QYK+L K + L Sbjct: 290 ENDDLIAYGLTPEFIGRLPIIVGLTHLTEDQLIQVIREPKNAIGKQYKKLFKMNDVKLHI 349 Query: 363 TEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD----LQEKTVVI 414 TE+++ +A A +V + GAR L++++E +L + F D QEK +V+ Sbjct: 350 TENALRLIAKKA-----SVRETGARGLRSILEGILTEAMFEIPDDGGEGQEKIIVV 400 >gi|238923551|ref|YP_002937067.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale ATCC 33656] gi|238875226|gb|ACR74933.1| ATP-dependent protease ATPase subunit clpX [Eubacterium rectale ATCC 33656] Length = 509 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 56/227 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DK+ + + N VS E VQ+ +L L+EGS V G +++ Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ +I QY++L++ + + L+F +D++ A+A + Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYV 419 A +GAR L+ ++E + DI + D TV I +YV Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYV 487 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49 +P I + LD Y++GQ+ AK+ +++A+ N ++R + AD + Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195 Query: 50 -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 E+ N+L++GPTG GKT + + LA+L P + T TE GY+G ++E ++ L+ Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255 Query: 109 VAINIVRESRR 119 A N V + Sbjct: 256 AADNDVERAEH 266 >gi|291528240|emb|CBK93826.1| endopeptidase Clp ATP-binding regulatory subunit (clpX) [Eubacterium rectale M104/1] Length = 509 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 56/228 (24%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-----------SIN 292 +GI+F+DE DK+ + + N VS E VQ+ +L L+EGS V G +++ Sbjct: 266 HGIIFIDEIDKLAKKRNANQRDVSGESVQQGMLKLLEGSEVEVPVGASSKNAMVPMTTVD 325 Query: 293 TDHILFIASGAF---------------HVSRPADL------------------------L 313 T +ILFI GAF + ADL + Sbjct: 326 TRNILFICGGAFPGLEDIIKERLNKEASIGFKADLKDKYDGDENLLMQATVDDIRKFGMI 385 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR P+ L++L + IL + ++ +I QY++L++ + + L+F +D++ A+A + Sbjct: 386 PEFIGRLPIMFSLEALTEDMLVKILKEPKNAIIKQYQKLLEMDEVRLEFDDDALYAIAKM 445 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 A +GAR L+ ++E + DI + D TV I +YV Sbjct: 446 A-----KEKKVGARALRAIIEDFMLDIMYEIPKDDNIGTVTITKDYVE 488 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 21/131 (16%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD------------------ 49 +P I + LD Y++GQ+ AK+ +++A+ N ++R + AD + Sbjct: 138 APHRIKASLDDYVVGQEHAKKVMSVAVYNHYKR--VMADNKHKAQEENTTAKQASNKYDG 195 Query: 50 -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 E+ N+L++GPTG GKT + + LA+L P + T TE GY+G ++E ++ L+ Sbjct: 196 VEIEKSNMLMIGPTGSGKTYLVKTLAKLLDVPLAITDATSLTEAGYIGDDIESVVSKLLA 255 Query: 109 VAINIVRESRR 119 A N V + Sbjct: 256 AADNDVERAEH 266 >gi|224129802|ref|XP_002328806.1| predicted protein [Populus trichocarpa] gi|222839104|gb|EEE77455.1| predicted protein [Populus trichocarpa] Length = 521 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 25/137 (18%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------QQLPADLRD--------- 49 +P+EI LD ++IGQ AK+ +++A+ N ++R P D Sbjct: 114 TPKEICKGLDEFVIGQDKAKKVLSVAVYNHYKRIYHASKQKKSHAPWSHSDGENDENEFI 173 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-------IGYVGRNVEQI 102 EL N+LL+GPTG GKT +++ LAR+ PF+ + T T+ GYVG +VE I Sbjct: 174 ELDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATTLTQASLFCCTAGYVGEDVESI 233 Query: 103 IRDLVDVAINIVRESRR 119 + L+ VA V ++R Sbjct: 234 LYKLLVVAEFNVEAAQR 250 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 78/250 (31%) Query: 245 GIVFLDEFDKIV---------ARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG------ 289 GIV++DE DKI A S G VS EGVQ+ LL ++EG+ ++ Sbjct: 251 GIVYIDEVDKITMKVYDFCVQAGSSSIGRDVSGEGVQQALLKMLEGTVINVPVPDKGPGK 310 Query: 290 -------SINTDHILFIASGAF----------------HVSRPA---------------- 310 ++T ILFI GAF P Sbjct: 311 HPRGDTIQVDTKDILFICGGAFVNLEKTISERRQDASIGFGAPVRANMRAGAITNAMVTS 370 Query: 311 --------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356 L+PE GRFPV L +LN+ +L + ++ L QYK++ Sbjct: 371 SLLESVESGDLVAYGLIPEFVGRFPVLASLLALNEDQLVQVLMEPKNALGKQYKKIFNMN 430 Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT----- 411 + L FT +++ +A A+ N+ GAR L+ ++E +L + F + + ++ Sbjct: 431 NVNLHFTGNALRLIAKKAMTKNT-----GARGLRAILENILTEAMFETPENKSQSNCITA 485 Query: 412 VVIDAEYVRL 421 V++D E V L Sbjct: 486 VLVDEEAVGL 495 >gi|190408624|gb|EDV11889.1| ATP-binding protein [Saccharomyces cerevisiae RM11-1a] gi|207347530|gb|EDZ73669.1| YBR227Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272890|gb|EEU07858.1| Mcx1p [Saccharomyces cerevisiae JAY291] gi|290878244|emb|CBK39303.1| Mcx1p [Saccharomyces cerevisiae EC1118] gi|323305890|gb|EGA59626.1| Mcx1p [Saccharomyces cerevisiae FostersB] Length = 520 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 108/487 (22%), Positives = 196/487 (40%), Gaps = 142/487 (29%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNR------------------------------ 37 +P+ + LD YI+GQ+ K+ +++A+ N Sbjct: 38 TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDKD 97 Query: 38 -------------WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLA 77 WR Q +L EL N+L+VGP+G GKT ++ LA++ Sbjct: 98 EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137 P + T+ T+ GY+G +VE I E+ +NAE + A Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCI--------------------ERLLVNAEFDVARA 197 Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196 G I EID ++A ++ I D+ G G +L + E Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236 Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256 K+ ++V++ ++ + D + T +D + +V+ I+F+ Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278 Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301 G +G+ + V+R D+ + + G SV + K+ NT + + + Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335 Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 G A ++ P DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 K G+ L T+ ++ +A A+ + GAR L+ +MER+L ++++ V Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450 Query: 413 VIDAEYV 419 +ID V Sbjct: 451 LIDEATV 457 >gi|301061949|ref|ZP_07202678.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] gi|300443966|gb|EFK08002.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [delta proteobacterium NaphS2] Length = 611 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 12/116 (10%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------L 51 F+ P E+ S LD +++ Q K + + + R + E + Sbjct: 69 NFSMMPEEMASYLDGFVVKQDQVKAVLGTKICTHFNRIRFNDQKESESFSGADKKSGVGM 128 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 + N+L++GPTGVGKT + + +A+ G PF+K + TKF+E GYVG +VE +IRDLV Sbjct: 129 IKNNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDLV 184 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 79/286 (27%) Query: 185 ASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLI-------DMDTVHRD- 236 + VG++ + L G G+ I++ QK ++ ++ + D++ + RD Sbjct: 124 SGVGMIKNNVLMIGPTGVGKTYMIKLIAQKLGVPFVKGDATKFSETGYVGGDVEDLIRDL 183 Query: 237 ------SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 SI++ EN GIV++DE DKI + + G VSR GVQR LL +E + V K Sbjct: 184 VYEADESIELAEN-GIVYIDEIDKISSSRNLIGHDVSRTGVQRALLKPMEETDVDLKVPH 242 Query: 291 ----------------------INTDHILFIASGAF---------HVSR----------- 308 +NT +ILFI SGAF + R Sbjct: 243 DPISQIQAIEHYRRTGKKEKKVVNTKNILFIMSGAFGDLAEIIKKRLQRQGIGFEADVRP 302 Query: 309 ---PADLLPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKE 351 P ++L E++ GR PV V LN+ D IL + + +I+ + Sbjct: 303 TEIPWEILKEVRAQDLVEFGFESEFVGRLPVVVVFDMLNREDLFEILKNPNNPIIISKRM 362 Query: 352 LMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 + GI + F +D++ +A +A N + GAR L + +E+VL Sbjct: 363 DFRAYGIDIKFEDDALRQIAALAENEKT-----GARGLVSAIEKVL 403 >gi|323334654|gb|EGA76028.1| Mcx1p [Saccharomyces cerevisiae AWRI796] Length = 519 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 108/487 (22%), Positives = 196/487 (40%), Gaps = 142/487 (29%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNR------------------------------ 37 +P+ + LD YI+GQ+ K+ +++A+ N Sbjct: 38 TPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKGELQRQRELMEREKIADDKD 97 Query: 38 -------------WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLA 77 WR Q +L EL N+L+VGP+G GKT ++ LA++ Sbjct: 98 EPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKIL 157 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDA 137 P + T+ T+ GY+G +VE I E+ +NAE + A Sbjct: 158 NVPIAITDCTQLTQAGYIGEDVEVCI--------------------ERLLVNAEFDVARA 197 Query: 138 LVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELF 196 G I EID ++A ++ I D+ G G +L + E Sbjct: 198 ------------------EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE-- 236 Query: 197 SKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV 256 K+ ++V++ ++ + D + T +D + +V+ I+F+ Sbjct: 237 --------GHKVEITVKRP----VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI------ 278 Query: 257 ARDSGNGIGVSREGVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIAS 301 G +G+ + V+R D+ + + G SV + K+ NT + + + Sbjct: 279 ---MGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDN 335 Query: 302 G----AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 G A ++ P DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + Sbjct: 336 GKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYI 395 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 K G+ L T+ ++ +A A+ + GAR L+ +MER+L ++++ V Sbjct: 396 FKQFGVRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYV 450 Query: 413 VIDAEYV 419 +ID V Sbjct: 451 LIDEATV 457 >gi|291614616|ref|YP_003524773.1| ATPase AAA [Sideroxydans lithotrophicus ES-1] gi|291584728|gb|ADE12386.1| ATPase AAA-2 domain protein [Sideroxydans lithotrophicus ES-1] Length = 341 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 9/135 (6%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ--QLPADLRDELMPKNILLVGPTG 63 +P I LD+Y++GQ +AK+ +++A+ + +R+Q Q D+ E+ NILL+GPTG Sbjct: 13 KLTPSAIAGYLDQYVVGQDEAKKVLSVAVYSHYRKQGRQRLGDV--EVAKSNILLIGPTG 70 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR---- 119 GKT + L+R+A PF+ T + YV +E ++ L++ A V +++R Sbjct: 71 TGKTLLCETLSRVARVPFVTANATSLAQSKYVNEEIEALLLRLLEKAGGDVAKAQRGIVF 130 Query: 120 -DEVREQASINAEER 133 DE+ + + E+R Sbjct: 131 IDEIDKLKASEGEQR 145 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 48/214 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS---INTDHILFIAS 301 GIVF+DE DK+ A + G G S E VQ LL ++EG+ V + GS I+T +ILFI + Sbjct: 127 GIVFIDEIDKLKASE-GEQRGTSGERVQHALLKIMEGAPV--RLGSAQTIDTTNILFICA 183 Query: 302 GAF----------HV---------------------SRPADL-----LPEIQGRFPVRVH 325 GAF H +P DL +PE GR P+ + Sbjct: 184 GAFVGLEDITAASHAFGFISVDKHDDQQILDRLNSRVKPTDLFKFGLIPEFAGRLPIIAN 243 Query: 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG 385 L++L+K I+ + +++ Q++E + EG+ L + +A++A +G Sbjct: 244 LQNLSKELLVKIMVEPRNSIYNQFREAFREEGVELHIELAAFQQIAEMAFEYK-----VG 298 Query: 386 ARRLQTVMERVLEDISFSASDLQE-KTVVIDAEY 418 AR L+ + E +L + F D E + VVI + + Sbjct: 299 ARSLRGIFEEMLTPVMFLVPDHPEIRRVVIKSLF 332 >gi|254526778|ref|ZP_05138830.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9202] gi|221538202|gb|EEE40655.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9202] Length = 455 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50 ++LT P EI S LD ++GQ+ AK+ +++A+ N ++R L +++E Sbjct: 75 LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132 Query: 51 ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311 +T ILFI GAF + P D Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDKNKVDTKKIIDPRDSLKNLELDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT L+ Q+K L+ + + L F DS+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A+ A + GAR L++++E ++ D+ ++ Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDVMYT 415 >gi|78780134|ref|YP_398246.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus str. MIT 9312] gi|123553649|sp|Q317Y5|CLPX_PROM9 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|78713633|gb|ABB50810.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9312] Length = 455 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50 ++LT P EI S LD ++GQ+ AK+ +++A+ N ++R L +++E Sbjct: 75 LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132 Query: 51 ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311 +T ILFI GAF + P D Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNNVDTKKLVEPRDSLKNLELDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT L+ Q+K L+ + + L F DS+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A+ A + GAR L++++E ++ D+ ++ Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDVMYT 415 >gi|157414263|ref|YP_001485129.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9215] gi|167009018|sp|A8G7G2|CLPX_PROM2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|157388838|gb|ABV51543.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9215] Length = 455 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50 ++LT P EI S LD ++GQ+ AK+ +++A+ N ++R L +++E Sbjct: 75 LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKVKEESKNSNSTDSQ 132 Query: 51 ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311 +T ILFI GAF + P D Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIIDPRDSLKNLELDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT L+ Q+K L+ + + L F DS+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELKFEPDSV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A+ A + GAR L++++E ++ D+ ++ Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDVMYT 415 >gi|226528894|ref|NP_001140703.1| hypothetical protein LOC100272778 [Zea mays] gi|194700644|gb|ACF84406.1| unknown [Zea mays] Length = 263 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 18/121 (14%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNR----------------WRRQQLPADLRD-- 49 +P+EI LD +++GQ AK+ +++A+ N W R + + D Sbjct: 39 TPKEIRRGLDEFVVGQDKAKKVLSVAVHNHYKRIYNESSNKCSVKSWVRGGVATNSDDVI 98 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GY G +VE +I L+ Sbjct: 99 ELEKSNILLIGPTGSGKTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVA 158 Query: 110 A 110 A Sbjct: 159 A 159 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%) Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTK-----------YGS 290 +GIV++DE DK+ + + VS EGVQ+ LL + EG+ +S Y Sbjct: 168 HGIVYIDEVDKLTKKADCRKDRRDVSGEGVQQALLKIFEGTIISVPGKRSRENIPQGYVE 227 Query: 291 INTDHILFIASGAF 304 ++T +ILFI GAF Sbjct: 228 VDTRNILFICGGAF 241 >gi|168042097|ref|XP_001773526.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675228|gb|EDQ61726.1| predicted protein [Physcomitrella patens subsp. patens] Length = 433 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 34/137 (24%) Query: 8 SPREIVSELDRYIIGQQDAKRA------------VAIALRNRWRRQQLPA---------- 45 +PREI LD++++GQ+ AK+A +++A+ N ++R + Sbjct: 25 TPREISQALDKFVVGQEKAKKAFSLFPSFNSLAILSVAVYNHYKRIHYESLLKSNIRLTD 84 Query: 46 ------DLRDE------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 D+ DE L N+LL+GPTG GKT +++ LAR PF+ + T T+ G Sbjct: 85 EGAGHSDMEDEENDGVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG 144 Query: 94 YVGRNVEQIIRDLVDVA 110 YVG +VE I+ L+ A Sbjct: 145 YVGEDVESILYKLLMAA 161 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 70/240 (29%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTK-----------YGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ V+ + + Sbjct: 171 GIVYIDEVDKITKKAENMNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQV 230 Query: 292 NTDHILFIASGAF--------------------------HVSRPAD-------------- 311 +T ILFI GAF V++ + Sbjct: 231 DTKDILFICGGAFIELEKTIAERRQDSSIGFGAPVRANMRVNKLVNAAVTSSLLELVESS 290 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFPV V L +LN+ +LT+ + L QYK++ + L +TE Sbjct: 291 DLISYGLIPEFIGRFPVLVSLAALNEDQLVQVLTEPRNALGKQYKKMFAMNNVKLHYTEG 350 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF----SASDLQEK--TVVIDAEYV 419 ++ +A A+ + + GAR L+++ME +L D + S S+ EK VV+D + V Sbjct: 351 ALRRIAQKAM-----IKNTGARGLRSIMEALLTDSMYQVPDSVSETDEKIDAVVLDEDAV 405 >gi|126697185|ref|YP_001092071.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9301] gi|166214800|sp|A3PFE5|CLPX_PROM0 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|126544228|gb|ABO18470.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9301] Length = 455 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 15/120 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50 ++LT P EI S LD ++GQ+ AK+ +++A+ N ++R L ++E Sbjct: 75 LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKR--LAWKFKEENKNSNSKDSQ 132 Query: 51 ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311 +T ILFI GAF + P D Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRDALKNLELDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT L+ Q+K L+ + + L F DS+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELSFEPDSV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A+ A + GAR L++++E ++ DI ++ Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDIMYT 415 >gi|324510952|gb|ADY44570.1| ATP-dependent Clp protease ATP-binding subunit clpX-like protein [Ascaris suum] Length = 528 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 134/311 (43%), Gaps = 80/311 (25%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG L+++ + V+ + + C ++ D+DTV + Sbjct: 194 SNIILLGPSGVGKTYLTQMLANVLD--------VPIAMCDCTVLTQAGYVGDDVDTVIQK 245 Query: 237 SIQMVE------NYGIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTK 287 +Q + GIVFLDEFDKI + + G VS GVQ+ LL LVEG+ + K Sbjct: 246 LLQNADGDIERTQRGIVFLDEFDKISSSTDFHSHGFRDVSGRGVQQALLKLVEGTVIKVK 305 Query: 288 ----YGS---INTDHILFIASGAFH----------------------------------- 305 G+ ++T ++LF+ASGAF+ Sbjct: 306 GPPSLGTKVDVDTSNVLFVASGAFNNLDKIIARRLHRKIVGFGADINTEYAECLQNKDEK 365 Query: 306 -VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 VS+ D ++PE+ GRFPV V L++ I+ + +++I Q Sbjct: 366 KVSKCRDQLLAQTDQTDLISFGMVPELIGRFPVYVPFHGLDEELLVRIMQEPRNSIISQA 425 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 K+ + + L FT+ ++ +A +AV + GAR L+ ++E VL D + Sbjct: 426 KQQFLLDKVRLHFTDGALKEIARIAVQKKT-----GARALRMIVENVLLDAKYEVPGTGV 480 Query: 410 KTVVIDAEYVR 420 TV+ID V+ Sbjct: 481 DTVIIDENVVK 491 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTGVGKTAISRRLA 74 II +++ + + R ++ ++L E L NI+L+GP+GVGKT +++ LA Sbjct: 155 IIKKKERTKVIHCKQRTKFNPKELQLKAHAEAGSFPLEKSNIILLGPSGVGKTYLTQMLA 214 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + P + T T+ GYVG +V+ +I+ L+ A + ++R Sbjct: 215 NVLDVPIAMCDCTVLTQAGYVGDDVDTVIQKLLQNADGDIERTQR 259 >gi|313228012|emb|CBY23161.1| unnamed protein product [Oikopleura dioica] Length = 493 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 106/238 (44%), Gaps = 70/238 (29%) Query: 245 GIVFLDEFDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSINTDH 295 GIV+LDE DKI AR GN VS EGVQ+ LL L+EGS VS K G+I D Sbjct: 240 GIVYLDEIDKIAARKLSGGNFRDVSGEGVQQGLLKLLEGSVVSVKDPFKKPAAGNIQVDT 299 Query: 296 --ILFIASGAF-----------------------HVS----------------------- 307 ILFI SGAF VS Sbjct: 300 SDILFICSGAFTGLPKLIQSRMQKKSLGFTAKPQTVSLTKKSKIAAMEERHKEEDECMLR 359 Query: 308 -RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 P DL +PE GR V V + +L ++DF IL + ++ ++ QY+ L+ + L+ Sbjct: 360 IEPEDLHKFGLIPEFVGRLQVLVPIMNLTQNDFVRILNEPDNAIVKQYRSLLAP--VELE 417 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 T+++ + +A +A+ + GAR L + M +L+ + + +V IDA+ V Sbjct: 418 MTDEAFERIAQIAIERGT-----GARGLNSSMHNLLKSVKYEIPGSDITSVYIDADVV 470 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADLRDELM 52 +P+E + LDR++IGQ+ AK ++ A+ ++R Q ++ L+ Sbjct: 112 TPKEFHAYLDRFVIGQEPAKMELSTAVHYHYKRIQNNLQYKANQEEKKQAAEGEMASVLI 171 Query: 53 PK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 K NIL++GPTG GKT + + LA+ P+ + T T+ GYVG ++E +I+ L+ + Sbjct: 172 DKSNILIMGPTGSGKTHLVQTLAKYLDVPYAVADCTALTQAGYVGEDIESVIQKLLQNSG 231 Query: 112 NIVRESRR 119 V +++R Sbjct: 232 GNVEKAQR 239 >gi|33862213|ref|NP_893774.1| ATP-dependent protease ATP-binding subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46576449|sp|Q7UZK6|CLPX_PROMP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|33634431|emb|CAE20116.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 455 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 15/120 (12%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE---------- 50 ++LT P EI + LD ++GQ+ AK+ +++A+ N ++R L L++E Sbjct: 75 LELTSIPKPLEIKTFLDNQVVGQESAKKILSVAVYNHYKR--LAWRLKEENKENDSNDLQ 132 Query: 51 ---LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 133 ATKLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATSLTEAGYVGEDVENILLRLL 192 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 62/222 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNHDCIQI 264 Query: 292 NTDHILFIASGAF-----------------HVSRPAD----------------------- 311 +T ILFI GAF + P + Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRLGKNSIGFTTNPDESKINAKKIIDSRDALKNLEQDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L+K ILT+ L+ Q+K L+ + + L+F +S+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLSKETLESILTEPRDALVKQFKTLLSMDNVELNFEPESV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE 409 +A+A+ A + GAR L++++E ++ D+ ++ +E Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDLMYTLPSQEE 421 >gi|222623077|gb|EEE57209.1| hypothetical protein OsJ_07170 [Oryza sativa Japonica Group] Length = 583 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 32/135 (23%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD+Y+IGQ AK+ +++A+ N ++R + ADL Sbjct: 155 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 214 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPF--------------IKVEVTKFTEIGYV 95 EL N+LL+GPTG GKT +++ LAR PF +K+ F + GYV Sbjct: 215 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 274 Query: 96 GRNVEQIIRDLVDVA 110 G +VE I+ L+ VA Sbjct: 275 GEDVESILYKLLAVA 289 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 G+V++DE DKI + I VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 299 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQI 358 Query: 292 NTDHILFIASGAF----------------HVSRPA------------------------- 310 +T ILFI GAF P Sbjct: 359 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSLLESVESG 418 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +LN+ +L + ++ L Q+K+L + L FT+ Sbjct: 419 DLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDA 478 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A++ N+ GAR L+T++E +L D + D + IDA Sbjct: 479 ALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 524 >gi|307706170|ref|ZP_07642988.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK321] gi|307618430|gb|EFN97579.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Streptococcus mitis SK321] Length = 397 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 11/116 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-----LMPKNILLVGPTG 63 P E++ L+ Y+IGQ AKRA+A+A+ N ++R D R+E L NIL++GPTG Sbjct: 55 PIELLHILNHYVIGQDRAKRALAVAVYNHYKRINF-HDTREESEDVDLQKSNILMIGPTG 113 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 GKT +++ LA+ PF + E GYVG +VE I+ L+ A NI R R Sbjct: 114 SGKTFLAQTLAKSLNVPFAIAD----AEAGYVGEDVENILLKLLQAADFNIERAER 165 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 166 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 225 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 226 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIISEDIQKFGIIP 285 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 286 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 345 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 346 IERKT-----GARGLRSIIEETMLDVMF 368 >gi|123969398|ref|YP_001010256.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. AS9601] gi|166214804|sp|A2BTN8|CLPX_PROMS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123199508|gb|ABM71149.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. AS9601] Length = 455 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 11/118 (9%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRD--------- 49 ++LT P EI S LD ++GQ+ AK+ +++A+ N ++R ++ D ++ Sbjct: 75 LELTSIPKPLEIKSFLDNQVVGQESAKKILSVAVYNHYKRLAWKVKEDSKNNNATDSQAT 134 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +L NILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 135 KLQKSNILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 62/216 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF------------------------------HVSRPAD---------- 311 +T ILFI GAF + P D Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRMGKHSIGFTTNSDQNKVDTKKIVDPRDSLKNLELDDL 324 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT L+ Q+K L+ + + L F DS+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTQPRDALVKQFKTLLSMDNVELSFEPDSV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 +A+A+ A + GAR L++++E ++ DI ++ Sbjct: 385 EAIANEAYKRKT-----GARALRSIIEELMLDIMYT 415 >gi|156050417|ref|XP_001591170.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980] gi|154692196|gb|EDN91934.1| hypothetical protein SS1G_07795 [Sclerotinia sclerotiorum 1980 UF-70] Length = 624 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 120/276 (43%), Gaps = 96/276 (34%) Query: 237 SIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSV----------- 284 S+Q E GI+F DE DK+ +G VS EGVQ+ LL ++EG++V Sbjct: 245 SVQKCET-GIIFFDEIDKLAKPAVMTHGRDVSGEGVQQGLLKMIEGTNVTINAKSDKNAS 303 Query: 285 ------------------STKYGSINTDHILFIASGAF---------------------- 304 S +Y +I+T +ILF+ +GAF Sbjct: 304 NSSRGIDRGGRETSPPSKSEQY-TIDTSNILFVFAGAFIGLEKIISQRLSTGSSIGFNSS 362 Query: 305 -------------------HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTD 340 H + P DL +PE+ GR P+ L L+ ILT+ Sbjct: 363 LSSFFSAIPTKEPEKDILVHTT-PTDLQNYGLIPELLGRIPITTSLSPLSLPQLVSILTE 421 Query: 341 TESNLILQYKELMKT---EGIILDFTEDSIDALADVAVNLNSTVGD------------IG 385 ++L+ QY L +T GIIL FT+ +++A+A A+ S+ GD IG Sbjct: 422 PRNSLVKQYTALFETYGPHGIILRFTKLALEAIASRAL-YGSSSGDTQESKGKGEKAGIG 480 Query: 386 ARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVR 420 AR L++VME VL++I F S + V++D +++ Sbjct: 481 ARGLRSVMESVLQEIMFIGPSSPNIRYVLVDEAFIK 516 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 44 PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 P+ R + N++L+GP+GVGKT I + LAR+ PF V+ + T+ GY+G ++E I Sbjct: 176 PSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTDIESSI 235 Query: 104 RDLV 107 L+ Sbjct: 236 ERLL 239 >gi|295698386|ref|YP_003603041.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Riesia pediculicola USDA] gi|291157211|gb|ADD79656.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Candidatus Riesia pediculicola USDA] Length = 420 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQ-----QLPADLRDELMPKNILLV 59 F P EI LD YI+GQ +K+ +++++ N +R + ++ E+ NILL+ Sbjct: 63 FTKKPYEIKKHLDDYIVGQDRSKKVLSVSIYNHCKRLISNNFKRTSNNSIEIEKNNILLI 122 Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 GPTG GKT +++ L+ PF + T TE GYVG +VE I+ L+ Sbjct: 123 GPTGSGKTLLAKTLSNYLNIPFAIADATTLTEAGYVGEDVENTIQKLL 170 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 61/231 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEG--SSVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL L+EG SSV + G I Sbjct: 183 GIIYIDEIDKISRKSDNLSITRDVSGEGVQQALLKLIEGTISSVPPQGGRKHPQQEFLQI 242 Query: 292 NTDHILFIASGAF---------------------------HVSR----------PADLL- 313 +T +ILFI G F + +R P DL+ Sbjct: 243 DTSNILFICGGTFFGLDQIILKRLNKSSGIGFCAKLIDHSYYNRNTSKILCQVEPQDLIK 302 Query: 314 ----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDA 369 PE GR V L N++ IL + +++LI QY++L + E + L F E+S Sbjct: 303 FGLIPEFVGRLSTFVILDEQNETSLVKILKEPKNSLIKQYQKLFEMENVQLKFEEESFKE 362 Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 +A A+ + GAR L++++E +L D+ + ++ K V+I+ + + Sbjct: 363 IAKKAI-----LKRTGARGLKSILEDILLDVMYKLPSMKSVKQVIINKKVI 408 >gi|159904324|ref|YP_001551668.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9211] gi|238687133|sp|A9BDA1|CLPX_PROM4 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|159889500|gb|ABX09714.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9211] Length = 453 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 7/109 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------LMPKNILLVGP 61 P +I LD+ ++GQ+ AK+ +++A+ N ++R D E L NILL+GP Sbjct: 84 PIDIKDFLDKQVVGQEVAKKILSVAVYNHYKRLAWQGDGNQETDLTATRLHKSNILLIGP 143 Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 TG GKT +++ LA L PF + T TE GYVG +VE I+ L+ A Sbjct: 144 TGSGKTLLAQTLAELLDVPFAVADATTLTEAGYVGEDVENILLRLLQKA 192 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 68/253 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 202 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYHDCIQI 261 Query: 292 NTDHILFIASGAF---------------------------HVSRPAD------------- 311 +T ILFI GAF H++R D Sbjct: 262 DTSQILFICGGAFVGLEDIVQKRLGKNSIGFMPTDSRGQNHLNRDLDNNQMINNLEPDDL 321 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ LN IL + +I Q++ LM + + L+F E ++ Sbjct: 322 IRYGLIPEFIGRMPVTAVLEPLNSEALEAILKEPRDAVIKQFRTLMSMDNVKLEFDEGAV 381 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF------SASDLQEKTVVIDAEYVRL 421 A+A A + GAR L+ ++E ++ D+ + + SD ++D + Sbjct: 382 TAIAQEAFRRKT-----GARALRGIVEELMVDLMYKLPSEKNVSDFTVTKKMVDEMIIGG 436 Query: 422 HIGDFPSETDMYH 434 + PS + H Sbjct: 437 KVLKLPSNEKIDH 449 >gi|145341067|ref|XP_001415637.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901] gi|144575860|gb|ABO93929.1| mitochondrial ClpX chaperone [Ostreococcus lucimarinus CCE9901] Length = 524 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 32/144 (22%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR------------------- 48 +P+E+V LD YI+GQ AK+ +++A+ N ++R + R Sbjct: 112 TPKEMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAEGERRAREASAAFAQRLDEEDGAF 171 Query: 49 ------DE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95 DE L NILL GPTG GKT +++ LA+ A PF + T T+ GYV Sbjct: 172 EDENVVDENSLDDVTLEKSNILLCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYV 231 Query: 96 GRNVEQIIRDLVDVAINIVRESRR 119 G +VE I+ L+ A V+ ++R Sbjct: 232 GEDVESILHKLLQNANYDVQAAQR 255 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 68/223 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVS-----------TKYG 289 GIV++DE DK+ +R S N + ++R EGVQ+ LL +VEG++V+ +++ Sbjct: 256 GIVYIDEIDKL-SRKSDN-VSITRDVSGEGVQQALLKMVEGTTVNVPEKGGRKNPNSQFV 313 Query: 290 SINTDHILFIASGAF----------------HVSRPA----------------------- 310 ++T +ILFI GAF +P Sbjct: 314 QLDTTNILFICGGAFTGLESVIQQRLSKSSIGFGKPVIARDEPNSKQAVEAAAKALQEVE 373 Query: 311 -------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 L+PE GRFPV V L +L + + ILT + QY+ L++ G L +T Sbjct: 374 TGDIVSYGLIPEFVGRFPVCVPLSALGEKELVDILTKPRDAVGKQYQRLLEMHGADLTYT 433 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 ++++ +A AV + GAR L+T++ER+L D F D Sbjct: 434 DEALSLIARAAVKRGT-----GARGLRTLLERLLTDAMFEVPD 471 >gi|308799613|ref|XP_003074587.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri] gi|116000758|emb|CAL50438.1| CLP protease regulatory subunit CLPX (ISS) [Ostreococcus tauri] Length = 506 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 27/130 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------QQLPADL----------RD 49 +PR++V LD YI+GQ AK+ +++A+ N ++R + ADL R Sbjct: 101 TPRQMVRVLDEYIVGQAHAKKVLSVAVYNHYKRVGAESEQRAREAADLSAVERELENDRT 160 Query: 50 E---------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 E L NI+L GPTG GKT +++ LA+ A PF + T T+ GYVG +VE Sbjct: 161 ESANSFDDVTLEKSNIILCGPTGSGKTLLAKTLAKFANVPFAIADSTTLTQAGYVGEDVE 220 Query: 101 QIIRDLVDVA 110 I+ L+ A Sbjct: 221 SILHKLLQNA 230 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 81/241 (33%) Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVS----------- 285 GIV++DE DK+ V RD VS EGVQ+ LL +VEG+ V+ Sbjct: 240 GIVYIDEIDKLARKSDTVSVTRD------VSGEGVQQALLKMVEGTVVNVPEKGGRKNPN 293 Query: 286 TKYGSINTDHILFIASGAF----------------HVSRPAD------------------ 311 +++ ++T +ILFI GAF +P Sbjct: 294 SQFVPLDTANILFICGGAFTGLENVIQQRQSKSSIGFGKPVSARDEPNSKEAIEAAAKAM 353 Query: 312 ------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 L+PE GRFPV V L++L + + ILT + Q++ LM G+ Sbjct: 354 QEVETGDIVSYGLIPEFVGRFPVCVPLQALGEKELVDILTKPRDAIGKQFQRLMDMHGVE 413 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD---LQEKTVVIDA 416 L +T+D++ +A AV + GAR L+T++ER+L D F D + E V+ID Sbjct: 414 LQYTDDALAHIASAAVKRGT-----GARGLRTLLERLLTDAMFEVPDDPMISE--VIIDG 466 Query: 417 E 417 E Sbjct: 467 E 467 >gi|302697103|ref|XP_003038230.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8] gi|300111927|gb|EFJ03328.1| hypothetical protein SCHCODRAFT_46048 [Schizophyllum commune H4-8] Length = 450 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 163/425 (38%), Gaps = 127/425 (29%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPAD----------------------------- 46 LD++IIGQ++AK+ +++ + N + R Q A Sbjct: 5 LDQFIIGQENAKKVLSVGVFNHYNRVQANASYREAQEDARREYEESARTIYDHEPPSAPP 64 Query: 47 -------------------LRDELMP------KNILLVGPTGVGKTAISRRLARLAGAPF 81 L + +P N+L++GPTG GKTA+++ LAR PF Sbjct: 65 GVSSANVQPMRRSKPPHLTLHADAIPYPYYEKSNVLMIGPTGSGKTALAKTLARTLDVPF 124 Query: 82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK 141 + T FT+ GYVG +VE I L+ A + E EQ + +E +D + K Sbjct: 125 AVSDATAFTQAGYVGEDVEMAIHRLLQAA------NWNPERAEQGIVFIDE--IDKIARK 176 Query: 142 TATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMG 201 + + T D++ D+ GG V L + G Sbjct: 177 SGSGGT-----------------------DSTRDV------GGEGV----QQALLRMLEG 203 Query: 202 SGRKKKIRMSVQKCY--PELMRDESDRLIDMDTVHRDSIQMVENYGIVFL-----DEFDK 254 S + + +VQ Y +D ++ + ++ I ++ I+F+ + DK Sbjct: 204 SIVTVQAKGAVQSDYSSSSTGKDSAEGARGRLSAAKNDIFQIDTSNILFIMSGAFEGLDK 263 Query: 255 IVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHIL-------FIASGAFHV 306 ++ + G IG + L S + + S N+ +IL +A G Sbjct: 264 VIEKRIAKGSIGFTAT--------LTRESKNNWPFFSPNSQNILEQVEISDLLAYG---- 311 Query: 307 SRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDS 366 L+PE R P L L D R ILT+ + +L+ QY L + + FT D+ Sbjct: 312 -----LIPEFVNRLPSITALAPLTIPDLRRILTEVKGSLLSQYTSLFGYWSVEIRFTGDA 366 Query: 367 IDALA 371 IDA+ Sbjct: 367 IDAIC 371 >gi|123967080|ref|YP_001012161.1| ATP-dependent protease ATP-binding subunit ClpX [Prochlorococcus marinus str. MIT 9515] gi|166214803|sp|A2BZ43|CLPX_PROM5 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|123201446|gb|ABM73054.1| Clp protease ATP-binding subunit, ClpX [Prochlorococcus marinus str. MIT 9515] Length = 455 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 15/112 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-------------LMPKN 55 P EI + LD ++GQ+ AK+ +++A+ N ++R L L++E L N Sbjct: 83 PLEIKTFLDNQVVGQESAKKILSVAVYNHYKR--LTWRLKEENKDNNSNDCHATKLQKSN 140 Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 ILL+GPTG GKT +++ LA PF + T TE GYVG +VE I+ L+ Sbjct: 141 ILLIGPTGSGKTLLAQTLAEFLDVPFAVADATTLTEAGYVGEDVENILLRLL 192 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 62/224 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 205 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYHDCIQI 264 Query: 292 NTDHILFIASGAF-------------HV-------------------SRPA--------- 310 +T ILFI GAF H SR A Sbjct: 265 DTSQILFICGGAFIGLEDIVQKRLGRHSIGFTTNSDESKIDAKKLVDSRDALKNLELDDL 324 Query: 311 ---DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L L K ILT+ L+ Q+K L+ + + L+F +S+ Sbjct: 325 VKYGLIPEFIGRIPVCAVLDRLTKETLESILTEPRDALVKQFKTLLSMDNVELNFEPESV 384 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT 411 +A+A+ A + GAR L++++E ++ D+ ++ +E T Sbjct: 385 EAIANEAFKRKT-----GARALRSIIEELMLDLMYTLPSQEEVT 423 >gi|225164863|ref|ZP_03727085.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae bacterium TAV2] gi|224800532|gb|EEG18906.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Opitutaceae bacterium TAV2] Length = 490 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 64/232 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ + +Y I Sbjct: 223 GIVYIDEIDKIGRKTDNVSITRDVSGEGVQQALLKILEGTICNVPPNGGRKHPNQEYVRI 282 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T +ILFI GAF + R P DL+ Sbjct: 283 DTSNILFICGGAFVGLDSIIQRRLGQRSLGFGNGVAFDPRKPMTAEEIMDGLAPVDLIRF 342 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L +D +L T+++L+ QY +L +G+ L T D++ A+ Sbjct: 343 GMIPEFIGRLPVVSVLDPLTVADLEKVLLRTKNSLVKQYGKLFSMDGVRLRITNDALRAI 402 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDAEYV 419 A AV L + GAR L+ ++E ++ +I + +D+ E VVIDA V Sbjct: 403 AQKAVELKT-----GARALRAILENIMLEIMYELPQRADVDE--VVIDASVV 447 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 49/158 (31%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA------------DLRD------- 49 P EI + LD ++IGQ AK+ +++A+ N ++R + A D R Sbjct: 63 PSEIKAALDDHVIGQDHAKKVLSVAVYNHYKRLRSAALSNPASASGKAGDARGRHAASGS 122 Query: 50 ------------------------------ELMPKNILLVGPTGVGKTAISRRLARLAGA 79 E+ NILL GPTG GKT ++R LAR+ Sbjct: 123 TAPASAAQSAATRGPLTDGIATPPLEFAEVEIEKSNILLAGPTGSGKTLLARTLARVLDV 182 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES 117 PF + T TE GYVG +VE ++ L+ A VR++ Sbjct: 183 PFAIADATTLTEAGYVGEDVENVVLRLLQAAGGDVRKA 220 >gi|15645984|ref|NP_208165.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori 26695] gi|6225167|sp|O25926|CLPX_HELPY RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2314544|gb|AAD08417.1| ATP-dependent protease ATPase subunit (clpX) [Helicobacter pylori 26695] Length = 446 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 16/133 (12%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50 L++ +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + Sbjct: 76 LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 135 Query: 51 ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 L NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L Sbjct: 136 EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 195 Query: 107 VDVAINIVRESRR 119 + + V+++++ Sbjct: 196 LQASDWNVQKAQK 208 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 209 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 268 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 269 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 328 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 329 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 388 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 389 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 428 >gi|40889781|pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 16/133 (12%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE------------ 50 L++ +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + Sbjct: 6 LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHL 65 Query: 51 ----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 L NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L Sbjct: 66 EEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRL 125 Query: 107 VDVAINIVRESRR 119 + + V+++++ Sbjct: 126 LQASDWNVQKAQK 138 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 198 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 199 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 258 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 259 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 318 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 319 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 358 >gi|46390353|dbj|BAD15818.1| putative ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) [Oryza sativa Japonica Group] Length = 666 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 32/135 (23%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------QQLPADLRD----------- 49 +P+EI LD+Y+IGQ AK+ +++A+ N ++R + ADL Sbjct: 231 TPKEICQGLDKYVIGQDRAKKVLSVAVYNHYKRIYHKSLQKGSGADLGGFDGEADDDDGV 290 Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPF--------------IKVEVTKFTEIGYV 95 EL N+LL+GPTG GKT +++ LAR PF +K+ F + GYV Sbjct: 291 ELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAIPKVKLNSCAFLQAGYV 350 Query: 96 GRNVEQIIRDLVDVA 110 G +VE I+ L+ VA Sbjct: 351 GEDVESILYKLLAVA 365 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 71/238 (29%) Query: 245 GIVFLDEFDKIVARD-----SGNGIGVSR----EGVQRDLLPLVEGSSVST-KYGS---- 290 G+V++DE DKI + + +SR EGVQ+ LL ++EG+ V+ + G+ Sbjct: 375 GMVYIDEVDKITKKADVFNMQAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHP 434 Query: 291 ------INTDHILFIASGA------------------FHVSRPAD--------------- 311 I+T ILFI GA F A+ Sbjct: 435 RGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGISSAQVTSSL 494 Query: 312 -------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 L+PE GRFP+ V L +LN+ +L + ++ L Q+K+L + Sbjct: 495 LESVESGDLIAYGLIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNV 554 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 L FT+ ++ +A A++ N+ GAR L+T++E +L D + D + IDA Sbjct: 555 KLHFTDAALRIIAKKAMSKNT-----GARGLRTILENILMDAMYEIPDAKSGEKRIDA 607 >gi|228982521|ref|ZP_04142780.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis Bt407] gi|228776704|gb|EEM25012.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus thuringiensis Bt407] Length = 395 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P EI ++LDR +IGQ DAK+ + + + N ++R + + ++ + NILL+G +G GKT Sbjct: 64 PHEIKNKLDRDVIGQDDAKKVLTVEIYNHYKR--IYSKVKTNIPKNNILLIGESGCGKTH 121 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + ++++ P V+ T TE GY G++V+ I+ L+ A Sbjct: 122 LVETISKIINIPMTIVDATTITETGYSGKDVDSILSSLIQEA 163 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR-EGVQRDLLPLVEGSSVSTKYG---------SINTD 294 GIVF+DE DK+ R S + EGVQ+ LL ++EG++ + + +INT Sbjct: 173 GIVFIDEVDKLAKRTSHTSTKDPQGEGVQQALLKMIEGTNFTIEQNRQSIKRTTVTINTS 232 Query: 295 HILFIASGAF------------------------HVSRPAD----------------LLP 314 +ILFI GAF V D L+P Sbjct: 233 NILFIFGGAFDGLQEIVDKRMNKHKKTIGFTNADTVEASKDNSKMSPISIEDLIQFGLIP 292 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR P+ + L L K D IL +I +Y +L K E L FT+++I+ +A A Sbjct: 293 EFIGRIPLILTLNPLTKEDLMDILMKPNGAIIPEYIKLFKEEQKDLRFTDEAIEYIATEA 352 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 ++ +GAR ++ ++ + + D+ + Sbjct: 353 LHKG-----LGARGMKGIVAKKMSDLLY 375 >gi|207109179|ref|ZP_03243341.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori HPKX_438_CA4C1] Length = 220 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 92 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 151 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 152 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 210 >gi|195590182|ref|XP_002084825.1| GD12633 [Drosophila simulans] gi|194196834|gb|EDX10410.1| GD12633 [Drosophila simulans] Length = 694 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 63/209 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS-TKYGSI-------NTDHI 296 GIV+LDE D+I A SG+ +G+Q+ +L ++EGS VS T G + +T +I Sbjct: 444 GIVYLDEVDQICAL-SGS------KGIQQGMLKMLEGSVVSLTNRGQLFGKAVQMDTTNI 496 Query: 297 LFIASGAF----------------------HVSRP----------------ADL-----L 313 LF+ASGAF P DL + Sbjct: 497 LFVASGAFTGLDKIIERRINEKNSDVTSTGEAGPPNAHQQERDKCLIKVQACDLAEFGMI 556 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE G FP+ V SL+ ILT+ + L+ QYK + +G+ L F+ D++ + A + Sbjct: 557 PEFVGHFPIIVPFHSLDAYMLVRILTEPPNALVSQYKAMFHLDGVELTFSHDALISAAQL 616 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ G++GAR L+ +ME++L D F Sbjct: 617 AMK-----GNMGARGLRPIMEQLLLDPMF 640 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NI+++GPTG GKT +++ +A+ PF + T + GYVG ++E ++ L+ Sbjct: 374 ELEKSNIMMLGPTGSGKTLVAKSIAKCLDVPFALCDCTTLMQAGYVGGDIESVLVKLLKD 433 Query: 110 AINIVRESRR-----DEVREQASINAEERILDALV 139 A N V ++ DEV + +++ + I ++ Sbjct: 434 ANNDVERAQTGIVYLDEVDQICALSGSKGIQQGML 468 >gi|332672822|gb|AEE69639.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori 83] Length = 448 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVCITKDCV 430 >gi|307638046|gb|ADN80496.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori 908] gi|325996650|gb|ADZ52055.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori 2018] gi|325998239|gb|ADZ50447.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori 2017] Length = 452 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 87 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 146 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206 Query: 112 NIVRESRR 119 V+++++ Sbjct: 207 WNVQKAQK 214 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 394 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434 >gi|210135559|ref|YP_002301998.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori P12] gi|210133527|gb|ACJ08518.1| ATP-dependent clp protease ClpX [Helicobacter pylori P12] Length = 448 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDDQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|15612353|ref|NP_224006.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori J99] gi|8134369|sp|Q9ZJL8|CLPX_HELPJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|4155892|gb|AAD06862.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori J99] Length = 452 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 87 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206 Query: 112 NIVRESRR 119 V+++++ Sbjct: 207 WNVQKAQK 214 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 215 GIVFIDEIDKISRLSEHRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 394 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434 >gi|317179825|dbj|BAJ57611.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F32] Length = 448 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|323356155|gb|EGA87960.1| Mcx1p [Saccharomyces cerevisiae VL3] Length = 421 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 99/414 (23%), Positives = 177/414 (42%), Gaps = 99/414 (23%) Query: 38 WRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 WR Q +L EL N+L+VGP+G GKT ++ LA++ P + T+ T Sbjct: 25 WRNLQRQFNLAGREVDEDLELSKSNVLVVGPSGSGKTLLATTLAKILNVPIAITDCTQLT 84 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150 + GY+G +VE I E+ +NAE + A Sbjct: 85 QAGYIGEDVEVCI--------------------ERLLVNAEFDVARA------------- 111 Query: 151 FRKKLRDGEISDKEIDIEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIR 209 G I EID ++A ++ I D+ G G +L + E K+ Sbjct: 112 -----EKGIIVLDEID-KLAKPAASIGTKDVSGEGVQQSLLKIIE----------GHKVE 155 Query: 210 MSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 ++V++ P ++ + D + T +D + +V+ I+F+ G +G+ + Sbjct: 156 ITVKR--P--VKHDIDGQKNQTTTKKDEVFVVDTSNILFMI---------MGAFVGLDKH 202 Query: 270 GVQR--DLLPLVE-GSSVST------------KYGSINTDHILFIASG----AFHVSRPA 310 V+R D+ + + G SV + K+ NT + + +G A ++ P Sbjct: 203 IVKRIEDMKKIQKAGESVESSNSKEVEKERAKKFRFSNTLEQVELDNGKKVCALDLTTPT 262 Query: 311 DL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + K G+ L T+ Sbjct: 263 DLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFGVRLCVTQK 322 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 ++ +A A+ + GAR L+ +MER+L ++++ V+ID V Sbjct: 323 ALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYVLIDEATV 371 >gi|254779913|ref|YP_003058019.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori B38] gi|254001825|emb|CAX30068.1| ATP-dependent Clp protease ATP-binding subunit clpX; ATPase subunit/chaperone protein [Helicobacter pylori B38] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|317014767|gb|ADU82203.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori Gambia94/24] Length = 452 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 87 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206 Query: 112 NIVRESRR 119 V+++++ Sbjct: 207 WNVQKAQK 214 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 394 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434 >gi|317011705|gb|ADU85452.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori SouthAfrica7] Length = 452 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 87 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNMELEHLEEVEL 146 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 206 Query: 112 NIVRESRR 119 V+++++ Sbjct: 207 WNVQKAQK 214 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 394 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434 >gi|208435267|ref|YP_002266933.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27] gi|208433196|gb|ACI28067.1| ATP-dependent protease ATPase subunit [Helicobacter pylori G27] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|261837486|gb|ACX97252.1| ATP-dependent C1p protease [Helicobacter pylori 51] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|217034446|ref|ZP_03439859.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10] gi|216943116|gb|EEC22590.1| hypothetical protein HP9810_11g28 [Helicobacter pylori 98-10] gi|317176837|dbj|BAJ54626.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F16] gi|317181320|dbj|BAJ59104.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F57] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|188528163|ref|YP_001910850.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori Shi470] gi|188144403|gb|ACD48820.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori Shi470] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|207091895|ref|ZP_03239682.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori HPKX_438_AG0C1] Length = 446 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 81 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 140 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 141 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 200 Query: 112 NIVRESRR 119 V+++++ Sbjct: 201 WNVQKAQK 208 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 209 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 268 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 269 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 328 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 329 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 388 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 389 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 428 >gi|315586024|gb|ADU40405.1| ATP-dependent Clp protease ATP-binding subunit [Helicobacter pylori 35A] gi|317178339|dbj|BAJ56127.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori F30] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|261838902|gb|ACX98667.1| ATP-dependent protease ATP-binding subunit [Helicobacter pylori 52] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|308062658|gb|ADO04546.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori Cuz20] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|308064149|gb|ADO06036.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori Sat464] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|308185155|ref|YP_003929288.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori SJM180] gi|308061075|gb|ADO02971.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori SJM180] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|109946697|ref|YP_663925.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter acinonychis str. Sheeba] gi|109713918|emb|CAJ98926.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter acinonychis str. Sheeba] Length = 436 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 13/125 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELM-------------PK 54 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L + Sbjct: 74 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKERLNKQESDLELEHLEEVELGKS 133 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + V Sbjct: 134 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 193 Query: 115 RESRR 119 +++++ Sbjct: 194 QKAQK 198 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 199 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 258 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 259 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVSYGLIP 318 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR P+ L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 319 ELIGRLPILSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 378 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 379 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 418 >gi|308473141|ref|XP_003098796.1| hypothetical protein CRE_30105 [Caenorhabditis remanei] gi|308268092|gb|EFP12045.1| hypothetical protein CRE_30105 [Caenorhabditis remanei] Length = 523 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 76/241 (31%) Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292 GIVFLDEFDKI SGN VS +GVQ+ LL LVEGS V + +I+ Sbjct: 265 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLSPNSKVTID 323 Query: 293 TDHILFI-------------------------ASGAFH------------------VSRP 309 T +ILF+ AS + H VS+ Sbjct: 324 TTNILFVSSGAFSNIEHIIARRMDKRSLGFSSASTSPHEESDQHTSEKLRDSDEEVVSKA 383 Query: 310 AD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK 354 D ++PE+ GRFPV V LNK+ +LT+ + +L+ Q K+ + Sbjct: 384 RDEMLKQCDQGDLIAFGMIPELVGRFPVIVPFHCLNKTHLMSVLTEPKGSLVAQTKKFFE 443 Query: 355 TEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 E + L F+ ++I+ +A++AV + GAR L++++E+ + + + K V I Sbjct: 444 NENVELRFSPEAIEMIAEMAVKRKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEI 498 Query: 415 D 415 + Sbjct: 499 N 499 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 50/149 (33%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40 P+EIV L++Y++GQ++AK+ +A+A+ +RR Sbjct: 104 PKEIVEHLNKYVVGQEEAKKCLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKIFRK 163 Query: 41 ------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLAG 78 +Q+ DL +D L+ K N++L+G +G GKT ++++LA + Sbjct: 164 QNPEIEEEYIPEYIEKSQRQILKDLEKRQDILLEKSNMILLGASGTGKTYMTQKLAEVLD 223 Query: 79 APFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 P + + T T+ GYVG +V+ +I+ L+ Sbjct: 224 VPIVICDCTTLTQAGYVGDDVDTVIQKLL 252 >gi|317010052|gb|ADU80632.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori India7] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQNNQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|308183486|ref|YP_003927613.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori PeCan4] gi|308065671|gb|ADO07563.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori PeCan4] Length = 452 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 87 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVEL 146 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 147 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 205 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 215 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 274 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 275 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 334 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 335 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 394 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 395 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 434 >gi|217032416|ref|ZP_03437910.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128] gi|298737033|ref|YP_003729563.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter pylori B8] gi|216945895|gb|EEC24513.1| hypothetical protein HPB128_164g16 [Helicobacter pylori B128] gi|298356227|emb|CBI67099.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter pylori B8] Length = 448 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAKLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|218510874|ref|ZP_03508752.1| ATP-dependent protease ATP-binding subunit ClpX [Rhizobium etli Brasil 5] Length = 324 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 57/210 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 119 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV 178 Query: 292 NTDHILFIASGAF-------------------------------HVSR---PADL----- 312 +T +ILFI GAF V R P DL Sbjct: 179 DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQDDRRVGEVLRELEPEDLVKFGL 238 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L++ IL++ ++ LI QY+ L + E + L F ED++ +A Sbjct: 239 IPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIAR 298 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ V GAR L+++ME++L D F Sbjct: 299 KAI-----VRKTGARGLRSIMEKILLDTMF 323 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Query: 27 KRAVAIALRNRWRR-QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 K+ +++A+ N ++R + EL NI+LVGPTG GKT +++ LAR+ PF + Sbjct: 25 KKILSVAVHNHYKRLAHASKNGEVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMAD 84 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T TE GYVG +VE II L+ A N+ R R Sbjct: 85 ATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 118 >gi|154298243|ref|XP_001549545.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10] gi|150858152|gb|EDN33344.1| hypothetical protein BC1G_11966 [Botryotinia fuckeliana B05.10] Length = 612 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 97/280 (34%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVSTKYGS--- 290 +SIQ E GI+F DE DK+ A+ + +G VS EGVQ+ LL ++EG++V+ S Sbjct: 244 NSIQKCET-GIIFFDEIDKL-AKPAVMTHGRDVSGEGVQQGLLKMIEGTTVTVNAKSDKN 301 Query: 291 -------------------------INTDHILFIASGAF--------------------- 304 I+T +ILF+ +GAF Sbjct: 302 ASNSNRSMDRGGREASPPARSEQYTIDTSNILFVFAGAFIGLEKIISQRLSTGSSIGFNS 361 Query: 305 ------------------------HVS----RPADLLPEIQGRFPVRVHLKSLNKSDFRL 336 H + + L+PE+ GR P+ L L+ Sbjct: 362 SLSSSSSSFFSSNPSKENQKDILVHATSTDLQAYGLIPELLGRIPITTSLSPLSLPQLVS 421 Query: 337 ILTDTESNLILQYKELMKT---EGIILDFTEDSIDALADVAVNLNSTVGD---------- 383 ILT+ ++L+ QY L +T GIIL FT+ +++A+A A+ +S+ Sbjct: 422 ILTEPRNSLVKQYTALFETYGSHGIILQFTKLALEAIASRALYGSSSPSSKENKGKGEKG 481 Query: 384 --IGARRLQTVMERVLEDISF-SASDLQEKTVVIDAEYVR 420 IGAR L+++ME VL++I F S + V++D +V+ Sbjct: 482 TGIGARGLRSIMENVLQEIMFIGPSSPNIRYVLVDEAFVK 521 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 45/74 (60%) Query: 44 PADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 P+ R + N++L+GP+GVGKT I + LAR+ PF V+ + T+ GY+G ++E I Sbjct: 176 PSQNRTIIEKSNLMLLGPSGVGKTYILQTLARVLEVPFATVDCSSLTQAGYIGTDIESSI 235 Query: 104 RDLVDVAINIVRES 117 L+ + N +++ Sbjct: 236 ERLLLASSNSIQKC 249 >gi|195054491|ref|XP_001994158.1| GH23301 [Drosophila grimshawi] gi|193896028|gb|EDV94894.1| GH23301 [Drosophila grimshawi] Length = 675 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 392 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 445 Query: 287 KYGSINTDHILFIASGAF--------------------------------HVSRPAD--- 311 + ++T +ILF+ASGA+ + P + Sbjct: 446 ETVQVDTTNILFVASGAYTGLDRLIGRRLNEKYLGFGMPSTSGSGRRAAQSAAAPMENDQ 505 Query: 312 -----LLPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L ++Q R FPV V SLN S ILT+ + L+ QYK L Sbjct: 506 EERDKCLTKVQARDLVEFGMIPEFVGRFPVIVPFHSLNVSMLVRILTEPRNALVPQYKAL 565 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FTED+++++A +A+ ++ GAR L+++ME++L D F ++V Sbjct: 566 LGLDEVELSFTEDAVESIAALAMERHT-----GARGLRSIMEQLLLDPMFIVPGSDIRSV 620 Query: 413 VIDAEYVR 420 I +YVR Sbjct: 621 HITGDYVR 628 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NI+++GPTG GKT I++ +AR PF + T T+ GYVG ++E +I L+ D Sbjct: 322 KLEKSNIIMLGPTGSGKTLIAQTIARCLDVPFAICDCTTLTQAGYVGEDIESVISKLLQD 381 Query: 109 VAINIVR 115 N+ R Sbjct: 382 ANYNVER 388 >gi|312074325|ref|XP_003139920.1| hypothetical protein LOAG_04335 [Loa loa] gi|307764922|gb|EFO24156.1| hypothetical protein LOAG_04335 [Loa loa] Length = 364 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 85/318 (26%), Positives = 138/318 (43%), Gaps = 79/318 (24%) Query: 171 DTSSDI--SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKC----YPELMRDES 224 D SD+ SN + G + VG L+++ +K++ + +++ C + D+ Sbjct: 31 DKDSDLGKSNILLMGPSGVGKTYLTQILAKIL------DVPIAMCDCTVLTQSGYVGDDV 84 Query: 225 DRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR---DSGNGIGVSREGVQRDLLPLVEG 281 D +I + D GIVFLDEFDKI + +S + V GVQ+ L LVEG Sbjct: 85 DTVIQKLLANADGDTDAAQRGIVFLDEFDKISSSLDFESRSFRDVGGRGVQQAFLKLVEG 144 Query: 282 SSVSTKY-GS------INTDHILFIASGAFH----------------------------- 305 + V K GS ++T +ILFIASGAF+ Sbjct: 145 TVVKVKQPGSNGTRVDVDTTNILFIASGAFNNLDRIVSQRLHKKLVGFGAGKDEELCCHY 204 Query: 306 --------VSRPAD---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 VS+ D ++PE+ GRFPV V SL + I+ + + Sbjct: 205 LTGKDETKVSKDRDDLLKQADHIDLIKYGMVPELVGRFPVLVPFTSLTEELLVRIMKEPK 264 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 S+++ Q ++ + I L FT+ ++ +A A + GAR L+++ E+VL D + Sbjct: 265 SSIVSQAEKQFLLDDIRLCFTDCALKEIARTAAQKGT-----GARALRSITEKVLLDAKY 319 Query: 403 SASDLQEKTVVIDAEYVR 420 + +VIDA V+ Sbjct: 320 DLPGTEIHKLVIDANVVK 337 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 39/58 (67%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 +L NILL+GP+GVGKT +++ LA++ P + T T+ GYVG +V+ +I+ L+ Sbjct: 35 DLGKSNILLMGPSGVGKTYLTQILAKILDVPIAMCDCTVLTQSGYVGDDVDTVIQKLL 92 >gi|207743050|ref|YP_002259442.1| partial clpx protein [Ralstonia solanacearum IPO1609] gi|206594447|emb|CAQ61374.1| putative partial clpx protein [Ralstonia solanacearum IPO1609] Length = 147 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P EI LD+Y+IGQ+ AK+ +A+A+ N ++R + D EL NILL+GPTG GK Sbjct: 69 TPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGK 128 Query: 67 TAISRRLARLAGAPFI 82 T +++ LARL PF+ Sbjct: 129 TLLAQTLARLLNVPFV 144 >gi|297734727|emb|CBI16961.3| unnamed protein product [Vitis vinifera] Length = 562 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 35/138 (25%) Query: 8 SPREIVSELDRYIIGQQDAKR--------------------AVAIALRNRWRR------- 40 +P+EI LD+++IGQ+ AK+ +++A+ N ++R Sbjct: 125 TPKEICKGLDKFVIGQERAKKLDFIPFSDFLVRSNWCQTWEVLSVAVYNHYKRIYHGSLQ 184 Query: 41 -----QQLPADLRD---ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 + +++ D EL N+LL+GPTG GKT +++ LAR PF+ + T T+ Sbjct: 185 KGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 244 Query: 93 GYVGRNVEQIIRDLVDVA 110 GYVG +VE I+ L+ VA Sbjct: 245 GYVGEDVESILYKLLTVA 262 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 70/257 (27%) Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284 L + TV ++Q + G+V++DE DKI + + VS EGVQ+ LL ++EG+ V Sbjct: 255 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTIV 313 Query: 285 ST-KYGS----------INTDHILFIASGAF----------------HVSRPA------- 310 + + G+ I+T ILFI GAF P Sbjct: 314 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQDSSIGFGAPVRANMRTG 373 Query: 311 -----------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLIL 347 L+PE GRFP+ V L +L + +LT+ ++ L Sbjct: 374 GLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVKVLTEPKNALGK 433 Query: 348 QYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDL 407 QYK+L + L FTE ++ +A A+ V + GAR L+ ++E +L + + D+ Sbjct: 434 QYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRALLESILTEAMYEIPDV 488 Query: 408 QEK-----TVVIDAEYV 419 + VV+D E V Sbjct: 489 KTGKDRVDAVVVDEESV 505 >gi|189234285|ref|XP_969886.2| PREDICTED: similar to ATP-dependent clp protease atp-binding subunit clpx [Tribolium castaneum] Length = 604 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 89/254 (35%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 330 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 383 Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312 ++T +ILF+ASGA++ VS+ A L Sbjct: 384 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQ 443 Query: 313 ------------LPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLI 346 L ++Q GRFPV V SLNK+ ILT+ ++ L+ Sbjct: 444 TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALL 503 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ + L FT ++D++A +A+ + GAR L+ +ME +L + F Sbjct: 504 PQYQRLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPG 558 Query: 407 LQEKTVVIDAEYVR 420 TV + EYVR Sbjct: 559 SGITTVHVTEEYVR 572 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 260 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 319 Query: 110 A 110 A Sbjct: 320 A 320 >gi|270002375|gb|EEZ98822.1| hypothetical protein TcasGA2_TC004428 [Tribolium castaneum] Length = 590 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 89/254 (35%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 316 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTVVNVPERNSPRKLRG 369 Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312 ++T +ILF+ASGA++ VS+ A L Sbjct: 370 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVSESQGRRAVSQQASLYQSSQ 429 Query: 313 ------------LPEIQ--------------GRFPVRVHLKSLNKSDFRLILTDTESNLI 346 L ++Q GRFPV V SLNK+ ILT+ ++ L+ Sbjct: 430 TAEEENAEKDAALKQVQARDLIDFGMIPEFVGRFPVLVPFHSLNKNMLVRILTEPKNALL 489 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ + L FT ++D++A +A+ + GAR L+ +ME +L + F Sbjct: 490 PQYQRLLAMDQCELSFTPGALDSIATLAMERKT-----GARGLRAIMESLLLEPMFEVPG 544 Query: 407 LQEKTVVIDAEYVR 420 TV + EYVR Sbjct: 545 SGITTVHVTEEYVR 558 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 246 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 305 Query: 110 A 110 A Sbjct: 306 A 306 >gi|126640550|ref|YP_001083534.1| ATP-dependent protease ATP-binding subunit ClpX [Acinetobacter baumannii ATCC 17978] Length = 364 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 4/95 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPAD---LRD-ELMPKNILLVGPTGVGKTAISRRLAR 75 +IGQ AK+ +++A+ N ++R ++ +D E+ NILL+GPTG GKT +++ LAR Sbjct: 1 MIGQDLAKKTLSVAVYNHYKRLKVGQSGHVSKDVEIAKSNILLIGPTGSGKTLLAQTLAR 60 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 L PF + T TE GYVG +VE I++ L+ A Sbjct: 61 LLDVPFAMADATTLTEAGYVGEDVENIVQKLLQKA 95 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 58/206 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-----------TKYGSI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 105 GIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQI 164 Query: 292 NTDHILFIASGAF-----------------------------------HVSRPADL---- 312 +T +ILFI GAF P DL Sbjct: 165 DTSNILFICGGAFAGLEKIVQQRQEKGGIGFTADVKNKDETKKLAELFRQVEPTDLVKFG 224 Query: 313 -LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 +PE GR PV L+ L++ ILT+ ++ L QY+ L E + L F + ++ A+A Sbjct: 225 LIPEFIGRLPVIATLEELDEEALMQILTEPKNALTRQYQYLFNMENVDLVFEDSALRAVA 284 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 A+ N+ GAR L++++E VL Sbjct: 285 KRALERNT-----GARGLRSILENVL 305 >gi|171690260|ref|XP_001910055.1| hypothetical protein [Podospora anserina S mat+] gi|170945078|emb|CAP71189.1| unnamed protein product [Podospora anserina S mat+] Length = 599 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 92/370 (24%), Positives = 146/370 (39%), Gaps = 74/370 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE I L+ A V Sbjct: 221 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVESCIERLLIEANYDV 280 Query: 115 RESRRDEVREQASINAEERILDAL--VGKTATSNTREVFRKKLRDG---EISDKEIDIEV 169 + + + +LD + + T N R+V + ++ + ++ I V Sbjct: 281 KAAEHGII-----------VLDEFDKIARKETVNGRDVGGEGVQQALLKLVEGTKVTITV 329 Query: 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLID 229 D + P G S + SG+ +D Sbjct: 330 KDNRPSRTQNQPPTGYG------STTPPQAPPSGK-----------------------VD 360 Query: 230 MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE----------GVQRDLLPLV 279 T+ +I V V LD+ ++ R S IG E +D+LPL Sbjct: 361 QYTIDTTNILFVFCGAFVGLDK--TVLRRVSKPSIGFGSEIRGGRSFSSTNSLKDILPL- 417 Query: 280 EGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDF 334 Y + I ++ PADL +PE+ GR L L+ + Sbjct: 418 ------ESYRHLPHQPIFEPNFTPLDLTTPADLQAFGFIPELIGRLHNICALSPLSLEEL 471 Query: 335 RLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 ILT+ ++L+ QY L +T L FT ++ A+A+ A + GAR L+ ME Sbjct: 472 YRILTEPRNSLVAQYTALFETYPSKLFFTRSALYAIAERAAK-----NETGARGLKMEME 526 Query: 395 RVLEDISFSA 404 RVL + + A Sbjct: 527 RVLAEPMYDA 536 >gi|153803692|ref|ZP_01958278.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae MZO-3] gi|124120769|gb|EAY39512.1| ATP-dependent hsl protease ATP-binding subunit HslU [Vibrio cholerae MZO-3] Length = 53 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/48 (72%), Positives = 39/48 (81%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK 54 +PREIVSEL+R+IIGQ AKRAVAIALRNRWRR QL LR E+ PK Sbjct: 4 MTPREIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPK 51 >gi|317013160|gb|ADU83768.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori Lithuania75] Length = 448 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 16/118 (13%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------LM 52 P+E+ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 84 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELS 143 Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 144 KSNILLLGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 201 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|297380556|gb|ADI35443.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Helicobacter pylori v225d] Length = 448 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------L 51 +P+++ + LD Y+IGQ+ AK+ ++A+ N ++R L+ + L Sbjct: 83 APKDLKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDSQDSDLELEHLEEVEL 142 Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + Sbjct: 143 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 202 Query: 112 NIVRESRR 119 V+++++ Sbjct: 203 WNVQKAQK 210 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 211 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 270 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 271 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 330 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 331 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIARLA 390 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 391 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 430 >gi|222632348|gb|EEE64480.1| hypothetical protein OsJ_19330 [Oryza sativa Japonica Group] Length = 504 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%) Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GIV++DE DK++ + N VS EGVQ LL + EG+ S+S Y + Sbjct: 186 GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 245 Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311 NT +ILFI G+F H+ P Sbjct: 246 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 305 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L L+++ +L + ++ + QYK+L K + L FTE+ Sbjct: 306 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 365 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419 ++ +A A + + GAR L+++ME +L + F D +E V++D E V Sbjct: 366 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 419 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 26/129 (20%) Query: 8 SPREIVSELDRYIIGQQDAKR------------AVAIALRNRWRRQQLPADLRD------ 49 +P+EI LD +++GQ AK+ VA+ + R + ++ Sbjct: 48 TPKEIRRGLDEFVVGQDKAKKVNETSLLVGVVLCVAVHITPRGIQNSSNCSMKSSACGDV 107 Query: 50 --------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 EL NILL+GPTG GKT +++ LAR A PF+ + T T+ GY G +VE Sbjct: 108 SMSGDDDIELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVES 167 Query: 102 IIRDLVDVA 110 II +L+ A Sbjct: 168 IICNLLAAA 176 >gi|325657413|gb|ADZ39188.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657415|gb|ADZ39189.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657417|gb|ADZ39190.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657421|gb|ADZ39192.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657423|gb|ADZ39193.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657425|gb|ADZ39194.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] gi|325657429|gb|ADZ39196.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] Length = 208 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 50/180 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 29 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 89 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208 >gi|108563744|ref|YP_628060.1| ATP-dependent protease ATP-binding subunit ClpX [Helicobacter pylori HPAG1] gi|107837517|gb|ABF85386.1| ATP-dependent protease ATPase subunit [Helicobacter pylori HPAG1] Length = 307 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 55/225 (24%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIVF+DE DKI I VS EGVQ+ LL +VEGS V+ + I Sbjct: 70 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQI 129 Query: 292 NTDHILFIASGAF--------------------------------HVSRPADL-----LP 314 +T ILFI +GAF H+ + DL +P Sbjct: 130 DTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIP 189 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L S++ IL ++ LI QY++L K + + L F E++I +A +A Sbjct: 190 ELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 249 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 + + GAR L+ ++E DI F L+ V I + V Sbjct: 250 LERKT-----GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCV 289 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 41/65 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LA+ P + T TE GYVG +VE I+ L+ + V Sbjct: 5 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 64 Query: 115 RESRR 119 +++++ Sbjct: 65 QKAQK 69 >gi|115465091|ref|NP_001056145.1| Os05g0533900 [Oryza sativa Japonica Group] gi|48843829|gb|AAT47088.1| putative ATP-dependent Clp protease subunit clpX [Oryza sativa Japonica Group] gi|113579696|dbj|BAF18059.1| Os05g0533900 [Oryza sativa Japonica Group] Length = 406 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 69/239 (28%) Query: 245 GIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGS-----------SVSTKYGSI 291 GIV++DE DK++ + N VS EGVQ LL + EG+ S+S Y + Sbjct: 88 GIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRKRNQDSISDGYVEV 147 Query: 292 NTDHILFIASGAF--------------HVS--RPAD------------------------ 311 NT +ILFI G+F H+ P Sbjct: 148 NTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNAIGESCCVEAIESD 207 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L L+++ +L + ++ + QYK+L K + L FTE+ Sbjct: 208 DLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKLFKMNDVKLHFTEN 267 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419 ++ +A A + + GAR L+++ME +L + F D +E V++D E V Sbjct: 268 ALRLIAKKAASRET-----GARELRSIMEDILTEAMFEIPDAREGKEKIIAVLVDEESV 321 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 40/61 (65%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR A PF+ + T T+ GY G +VE II +L+ Sbjct: 18 ELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNLLAA 77 Query: 110 A 110 A Sbjct: 78 A 78 >gi|325657419|gb|ADZ39191.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] Length = 208 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 50/180 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 29 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88 Query: 292 NTDHILFIASGAF---------HVSRPA----------------------------DLLP 314 NT +ILFI GAF +++ + L+P Sbjct: 89 NTQNILFICGGAFVGLENIVKNRINKSSIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILIDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208 >gi|170044440|ref|XP_001849855.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex quinquefasciatus] gi|167867595|gb|EDS30978.1| ATP-dependent Clp protease ATP-binding subunit clpX [Culex quinquefasciatus] Length = 614 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 104/248 (41%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 334 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 387 Query: 287 KYGSINTDHILFIASGAF-----------------------------------------H 305 + ++T +ILF+ASGA+ Sbjct: 388 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 447 Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 V R A+L +PE GRFPV V SL+ ILT+ + L+ QYK L Sbjct: 448 VERDANLRKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVEMLVRILTEPRNALVPQYKAL 507 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L F ED++ +A +A+ + GAR L+ +ME +L + F KTV Sbjct: 508 LGMDQVELTFAEDALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVKTV 562 Query: 413 VIDAEYVR 420 I + VR Sbjct: 563 HITDDCVR 570 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A Sbjct: 269 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 324 >gi|147791350|emb|CAN75136.1| hypothetical protein VITISV_040753 [Vitis vinifera] Length = 600 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ V+ + G+ I Sbjct: 312 GIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI 371 Query: 292 NTDHILFIASGAF--------------------------HVSRPA--------------- 310 +T ILFI GAF P Sbjct: 372 DTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTXAAVASSLLETVESS 431 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L +L ++ +LT+ ++ L QYK++ + G+ L FT++ Sbjct: 432 DLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKN 491 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ ++ A + N+ GAR L++ +E +L B + D++ +IDA Sbjct: 492 ALRLISRKAXSKNT-----GARGLRSXLENILMBAMYEIPDVRTGNDIIDA 537 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 37/149 (24%) Query: 3 LTFNF-SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR---QQL----------PA-DL 47 L NF +P+EI LD+++IGQ+ AK+ +++A+ N ++R Z L PA D Sbjct: 159 LGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHZSLQKCDPTWRIRPAEDT 218 Query: 48 RD-----------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFI----------KVEV 86 D EL NILL+GPTG G T + F + Sbjct: 219 SDDKAEATDNDSVELEKSNILLMGPTGSGSTGSLSIIMLFLITWFTWYFHFFKDREDITC 278 Query: 87 TKFTEIGYVGRNVEQIIRDLVDVA-INIV 114 GYVG +VE I+ L+ VA N+V Sbjct: 279 QNLGTAGYVGEDVESILYKLLMVADYNVV 307 >gi|218189491|gb|EEC71918.1| hypothetical protein OsI_04712 [Oryza sativa Indica Group] Length = 630 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 27/130 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAV---------AIALRNRWRR--------------QQLP 44 +PRE+ LD ++IGQ AK+ + ++A+ N ++R L Sbjct: 204 TPREMCRRLDEFVIGQGKAKKVLEGACHNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLD 263 Query: 45 ADLRD----ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 A D E+ N+LL+GPTG GKT +++ LAR+ PFI + T T+ GYVG +VE Sbjct: 264 AASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVE 323 Query: 101 QIIRDLVDVA 110 I++ L+ A Sbjct: 324 SILQKLLVAA 333 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + GS I Sbjct: 343 GIVYIDEVDKITKKAESVNVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 402 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ P Sbjct: 403 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRTNMRSSEVTDPMVTSSLLESVESG 462 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ Sbjct: 463 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 522 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418 ++ +A A+ N+ GAR L+ ++E +L + + D EKT VV+D E Sbjct: 523 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 575 Query: 419 V 419 + Sbjct: 576 I 576 >gi|325657427|gb|ADZ39195.1| ATP-dependent Clp protease subunit X [Borrelia burgdorferi] Length = 208 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 50/180 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI ++ I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 29 GIIYIDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVANVPPRGGRKHPYEDTIEI 88 Query: 292 NTDHILFIASGAF--------------HVSRPA-----------------------DLLP 314 NT +ILFI GAF + A L+P Sbjct: 89 NTQNILFICGGAFVGLENIVKNRINKSFIGFSAIEKKNIREDTSLKYLEMEDLIKFGLIP 148 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GR PV +L+ LNK D IL D +++++ QY + K + + L F +D+++++ D A Sbjct: 149 EFVGRLPVHSYLEKLNKEDLLRILVDPQNSIVKQYYHMFKMDNVELVFEKDALESIVDEA 208 >gi|316967042|gb|EFV51535.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpX [Trichinella spiralis] Length = 580 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 38/143 (26%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----QQLPADLRDE------------- 50 P+EI + LD++++GQ+ AK+ +++A+ N ++R + +P D Sbjct: 164 PKEIYNYLDKFVVGQEQAKKVLSVAVYNHYKRVYLCPRPVPGSKNDNGDSSRPVTPMMTT 223 Query: 51 -------------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 L NILL+GPTG GKT +++ +A+ PF + T T+ Sbjct: 224 KGKCLFVHGFGCVVYPELRLEKSNILLLGPTGCGKTLLAQTVAQCLDVPFAICDCTTLTQ 283 Query: 92 IGYVGRNVEQII-RDLVDVAINI 113 GYVG +VE +I R L D N+ Sbjct: 284 AGYVGEDVESVISRLLQDANYNV 306 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 7/107 (6%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V SL+++ ILT+ +++LI QYK L + I L FT+D+++A+A Sbjct: 452 MIPEFVGRLPVLVQFHSLDQNLLVRILTEPQNSLIAQYKALFTMDQIDLHFTDDALNAIA 511 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA--SDLQEKTVVIDA 416 +A+ + GAR L+ ++E +L D F +D+ TV DA Sbjct: 512 RLALQKKT-----GARGLRAIVESILLDPMFECPGTDVSSVTVTADA 553 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST-KYGS------ 290 GIVFLDE DKI A RD G EGVQ+ LL ++EGS V+ ++GS Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQALLKMLEGSVVNVPQHGSRKMRGE 365 Query: 291 ---INTDHILFIASGAFH 305 ++T ++LF+ASGAF+ Sbjct: 366 NIQVDTTNVLFVASGAFN 383 >gi|261884907|ref|ZP_06008946.1| ATP-dependent protease ATP-binding subunit ClpX [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 217 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 53/197 (26%) Query: 266 VSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAF---------- 304 VS EGVQ+ LL ++EGS V+ + I+T +ILF+ GAF Sbjct: 8 VSGEGVQQALLKIIEGSPVNIPPKGGRKHPNQDFIQIDTTNILFVCGGAFDGLNEIIERR 67 Query: 305 ---------HVSRPAD------------------LLPEIQGRFPVRVHLKSLNKSDFRLI 337 + R D L+PE+ GR L + D I Sbjct: 68 IGKNVLGFGQIKRGRDDKQNLISLVEPDDLVHFGLIPELIGRLHAIATLNEITTDDMVKI 127 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 LT+ ++ L+ QY++L +G L F D+I +A A+N + GAR L+++ME ++ Sbjct: 128 LTEPKNALLKQYQKLFAIDGAXLKFDNDAIKEVATQAINRXT-----GARGLRSIMEDIM 182 Query: 398 EDISFSASDLQEKTVVI 414 DI F+ DL+ V+I Sbjct: 183 MDIMFNLPDLKGYDVII 199 >gi|5353573|gb|AAD42187.1|AF134983_1 energy-dependent regulator of proteolysis [Mus musculus] Length = 632 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 87/251 (34%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 354 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 407 Query: 291 ---INTDHILFIASGAFH-----VSR-----------PADL------------------- 312 ++T ++LF+ASGAF+ +SR P++L Sbjct: 408 TVQVDTTNVLFVASGAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAADLANRSGESNT 467 Query: 313 ------------------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 +PE GR PV V L SL++ ILT+ + +I Q Sbjct: 468 HQDIEEKDRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQ 527 Query: 349 YKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQ 408 Y+ L + L+ TED++ A+A +A+ + GAR L+++ME++L + F + Sbjct: 528 YQALFSMDKCELNVTEDALKAIARLALERKT-----GARGLRSIMEKLLLEPMFEVPNSD 582 Query: 409 EKTVVIDAEYV 419 V +D E V Sbjct: 583 IVCVEVDKEVV 593 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343 Query: 109 VAINI 113 N+ Sbjct: 344 ANYNV 348 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213 >gi|226532215|ref|NP_001140773.1| hypothetical protein LOC100272848 [Zea mays] gi|194701024|gb|ACF84596.1| unknown [Zea mays] Length = 346 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 65/244 (26%) Query: 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KY 288 TV ++Q + G+V++DE DKI + I VS EGVQ+ LL ++EG+ V+ + Sbjct: 50 TVADFNVQAAQQ-GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 108 Query: 289 GS----------INTDHILFIASGAF----------------HVSRPA------------ 310 G+ I+T ILFI GAF P Sbjct: 109 GARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRVGGTSSA 168 Query: 311 ------------------DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 L+PE GRFP+ V L +LN+ +LT+ ++ L Q+K+L Sbjct: 169 QVTSSLLESVESGDLIAYGLIPEFIGRFPILVSLTALNEDQLVQVLTEPKNALGKQFKKL 228 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + L FT+ ++ +A+ A++ N+ GAR L+T++E +L D + D + Sbjct: 229 FSMNDVKLHFTDGALRIIAEKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEK 283 Query: 413 VIDA 416 IDA Sbjct: 284 RIDA 287 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 34/52 (65%) Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ VA Sbjct: 1 MGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVA 52 >gi|297517735|ref|ZP_06936121.1| ATP-dependent protease ATP-binding subunit ClpX [Escherichia coli OP50] Length = 334 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQVLLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAFH-----VSR-------------------------------PADLL-- 313 +T ILFI GAF +S P DL+ Sbjct: 149 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 208 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+ Sbjct: 209 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 268 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 269 AKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 309 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 >gi|238005674|gb|ACR33872.1| unknown [Zea mays] Length = 362 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 64/231 (27%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-KYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + G+ I Sbjct: 73 GIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQI 132 Query: 292 NTDHILFIASGAF-----------HVSR-------------------------------- 308 +T +ILFI GAF H S Sbjct: 133 DTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESG 192 Query: 309 ---PADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GRFP+ V L SL++ +LT+ ++ L QY +L + + L FTE+ Sbjct: 193 DLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEE 252 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 ++ +A A++ N+ GAR L++++E +L + + + + IDA Sbjct: 253 ALRLIAKRAISKNT-----GARGLRSILESILTEAMYEIPETRTGKDKIDA 298 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 EL NIL++GPTG GKT +++ LAR PF+ + T T+ GYVG +VE I+ L+ Sbjct: 3 ELEKSNILVMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLL 60 >gi|158290292|ref|XP_563112.3| AGAP002996-PA [Anopheles gambiae str. PEST] gi|157017824|gb|EAL40794.3| AGAP002996-PA [Anopheles gambiae str. PEST] Length = 641 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 104/248 (41%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 360 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 413 Query: 287 KYGSINTDHILFIASGAF-----------------------------------------H 305 + ++T +ILF+ASGA+ Sbjct: 414 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASASPMDNDQ 473 Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 V R A+L +PE GRFPV V SL+ ILT+ + L+ QYK L Sbjct: 474 VERDANLKKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKAL 533 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L FT++++ +A +A+ + GAR L+ +ME +L + F K V Sbjct: 534 LGMDQVELSFTDEALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVKGV 588 Query: 413 VIDAEYVR 420 I E VR Sbjct: 589 RITEESVR 596 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A Sbjct: 295 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 350 >gi|222619642|gb|EEE55774.1| hypothetical protein OsJ_04339 [Oryza sativa Japonica Group] Length = 572 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 73/241 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVS-TKYGS----------I 291 GIV++DE DKI + + VS EGVQ+ LL ++EG+ VS + GS I Sbjct: 136 GIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEKGSRKNSRNESIQI 195 Query: 292 NTDHILFIASGAF-----------------------------HVSRPA------------ 310 +T ILFI GAF V+ P Sbjct: 196 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRINMRSSEVTDPMVTSSLLESVESG 255 Query: 311 -----DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ Sbjct: 256 DLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKMFSLNKVKLHFTDG 315 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEY 418 ++ +A A+ N+ GAR L+ ++E +L + + D EKT VV+D E Sbjct: 316 ALRIVAKKAIARNT-----GARGLRAILESLLLEAMYEIPD--EKTGSERVDAVVVDEEA 368 Query: 419 V 419 + Sbjct: 369 I 369 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 27/122 (22%) Query: 16 LDRYIIGQQDAKRAV---------AIALRNRWRR--------------QQLPADLRD--- 49 LD ++IGQ AK+ + ++A+ N ++R L A D Sbjct: 5 LDEFVIGQGKAKKVLEGACQNWVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNN 64 Query: 50 -ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 E+ N+LL+GPTG GKT +++ LAR+ PFI + T T+ GYVG +VE I++ L+ Sbjct: 65 IEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLV 124 Query: 109 VA 110 A Sbjct: 125 AA 126 >gi|213022612|ref|ZP_03337059.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 266 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 22 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 81 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 82 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 141 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 142 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 201 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 202 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 242 >gi|213610197|ref|ZP_03370023.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 275 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 60/226 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 31 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 90 Query: 292 NTDHILFIASGAF------------------------------------HVSRPADLL-- 313 +T ILFI GAF P DL+ Sbjct: 91 DTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKF 150 Query: 314 ---PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDAL 370 PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+ Sbjct: 151 GLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAI 210 Query: 371 ADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A A+ + GAR L++++E L D + +++ + VVID Sbjct: 211 ARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 251 >gi|229025936|ref|ZP_04182328.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1272] gi|228735382|gb|EEL85985.1| ATP-dependent Clp protease ATP-binding subunit clpX [Bacillus cereus AH1272] Length = 295 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 56/209 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GI+++DE DK+ + I VS EGVQ+ LL ++EG+ S ++ I Sbjct: 52 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 111 Query: 292 NTDHILFIASGAF------------------------------HVSR---PADLL----- 313 +T +ILFI GAF HV P DLL Sbjct: 112 DTTNILFICGGAFDGIEPIIKRRLGEKVIGFGAEKKNADVNEKHVLSHVLPEDLLRFGLI 171 Query: 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 PE GR PV +L+ L++ ILT ++ L+ Q+++L++ + + L+F E ++ +A Sbjct: 172 PEFIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALVEIAKK 231 Query: 374 AVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L++++E ++ D+ F Sbjct: 232 AIERKT-----GARGLRSIIEGLMLDVMF 255 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ LAR+ PF + T TE GYVG +VE I+ L+ A Sbjct: 1 MAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 42 >gi|147770637|emb|CAN64542.1| hypothetical protein VITISV_013764 [Vitis vinifera] Length = 730 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 43/146 (29%) Query: 8 SPREIVSELDRYIIGQQDAKR----------------------------AVAIALRNRWR 39 +P+EI LD+++IGQ+ AK+ +++A+ N ++ Sbjct: 269 TPKEICKGLDKFVIGQERAKKFSGIEVYIVEIGKWGHSFKRSNWCQTWEVLSVAVYNHYK 328 Query: 40 R------------QQLPADLRD---ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 R + +++ D EL N+LL+GPTG GKT +++ LAR PF+ Sbjct: 329 RIYHGSLQKGSGAESGTSEVDDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIA 388 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVA 110 + T T+ GYVG +VE I+ L+ VA Sbjct: 389 DATTLTQAGYVGEDVESILYKLLTVA 414 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 108/273 (39%), Gaps = 86/273 (31%) Query: 227 LIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSV 284 L + TV ++Q + G+V++DE DKI + + VS EGVQ+ LL ++EG+ + Sbjct: 407 LYKLLTVAEFNVQAAQQ-GMVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTDL 465 Query: 285 S-TKYG--------------------------SINTDHILFIASGAF------------- 304 + Y I+T ILFI GAF Sbjct: 466 KWSGYKILRGIKQXIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISDRRQD 525 Query: 305 ---HVSRPA------------------------------DLLPEIQGRFPVRVHLKSLNK 331 P L+PE GRFP+ V L +L + Sbjct: 526 SSIGFGAPVRANMRTGGLTNAVVTSSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTE 585 Query: 332 SDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 +LT+ ++ L QYK+L + L FTE ++ +A A+ V + GAR L+ Sbjct: 586 DQLVKVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRQIAKKAM-----VKNTGARGLRA 640 Query: 392 VMERVLEDISFSASDLQEK-----TVVIDAEYV 419 ++E +L + + D++ VV+D E V Sbjct: 641 LLESILTEAMYEIPDVKTGKDRVDAVVVDEESV 673 >gi|238483617|ref|XP_002373047.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357] gi|220701097|gb|EED57435.1| ATP-dependent Clp protease, putative [Aspergillus flavus NRRL3357] Length = 553 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 105/446 (23%), Positives = 178/446 (39%), Gaps = 90/446 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQLPADLRDE----LMPKNILLVGPT 62 +P+ + LD++++GQ AK+ +++A+ N ++R Q+L RDE L+ K Sbjct: 86 TPKTLKQYLDQFVVGQDRAKKILSVAVYNHYQRVQEL--QRRDEEAVELLAKR------- 136 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR--- 119 + ++ R + PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 137 -ARRESVDRHPVEV---PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERGII 192 Query: 120 --DEVREQASINAE-------ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVA 170 DEV + A+ E + AL+ K T +V K+ ++ + + Sbjct: 193 VLDEVDKIAAAKVSHGKDVGGEGVQQALL-KIIEGTTVQVQAKQEKNAPRAGGTPN--TY 249 Query: 171 DTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDM 230 ++S + N P G+ E+++ R I + L + + M Sbjct: 250 PSNSPLGNSPYPPSNGGGMSQKGEVYNV-----RTDNILFIFSGAFVGLHK------VVM 298 Query: 231 DTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREG----VQRDLLPLVEGSSVST 286 D + R SI F + V S + R G +P+V GS Sbjct: 299 DRISRGSIG------------FGQPVRTPSNSD---ERPGQSTTANNQPVPIVPGSEEEA 343 Query: 287 KYGSINTDHILFIASG-------------AFHVSRPADL-----LPEIQGRFPVRVHLKS 328 Y H+ F S A + P DL +PE+ GR PV L + Sbjct: 344 LY----KKHLPFFTSASPESPDGEPTYFNALDLINPTDLQNYGFIPELVGRVPVTAALST 399 Query: 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARR 388 L + ILT+ ++L+ QY L GI L FT ++ +A A + + GAR Sbjct: 400 LTQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIAANAFTMGT-----GARA 454 Query: 389 LQTVMERVLEDISFSASDLQEKTVVI 414 L+T ME +L D + K V++ Sbjct: 455 LRTEMETILSDAMYETPGSSVKFVLV 480 >gi|260813876|ref|XP_002601642.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae] gi|229286941|gb|EEN57654.1| hypothetical protein BRAFLDRAFT_124317 [Branchiostoma floridae] Length = 664 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 95/267 (35%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVST----------KYGS 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 363 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPERNTRKLRGESVP 419 Query: 291 INTDHILFIASGAFH-----VSR-----------PADLLP-------------------- 314 ++T +ILF+ASGAF+ +SR PA++ P Sbjct: 420 VDTTNILFVASGAFNGLDRIISRRRHEKYLGFGAPANISPGRRAATASDVQSMTEGTNAQ 479 Query: 315 -------------------------EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 E GR PV V L+SL+++ ILT + LI QY Sbjct: 480 ADNEEKDAMLAHVQARDLIEFGMIPEFVGRLPVVVALQSLSQAMLVRILTQPRNALIPQY 539 Query: 350 KELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDL 407 + L + + + L+ ++D+++A+A +A+ + GAR L+ +ME +L D F SD+ Sbjct: 540 QALFQMDKVQLEVSDDALEAIAQLALERKT-----GARGLRAIMETLLLDPMFEVPGSDI 594 Query: 408 ----QEKTVVI---DAEYVRL---HIG 424 EK V++ A+Y L H G Sbjct: 595 VGVRLEKEVILGQKPAQYFSLLDFHTG 621 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 NILL+GPTG GKT +++ LAR PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 298 NILLLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADANYNV 357 >gi|170088152|ref|XP_001875299.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650499|gb|EDR14740.1| predicted protein [Laccaria bicolor S238N-H82] Length = 491 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 43/146 (29%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-----------------QQLPAD---- 46 +PRE+V L+++I+GQ++AK+ +++A+ N + R + +P D Sbjct: 51 TPRELVEYLNQFIVGQENAKKVLSVAVYNHYNRVRANLAFEADEIETNNTRDVPPDSRSG 110 Query: 47 --------LRDELMP--------------KNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 LR + P N+L++GPTG GKT +++ LA++ PF Sbjct: 111 VASARIRPLRKQASPLSLSARRMVPLFEKSNVLVIGPTGSGKTLLAKTLAKVLDVPFSVS 170 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVA 110 + T FT+ GYVG + + I+ L+ A Sbjct: 171 DATSFTQAGYVGEDADMAIQRLLQAA 196 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 87/218 (39%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGSSVSTK-----YG------ 289 GI+++DE DKI AR S G SR EGVQ+ LL ++EGS V+ + Y Sbjct: 206 GIIYIDEIDKI-ARKSSTGTEGSRDVGGEGVQQALLRMMEGSVVTVQAKGAVYAEAAPSG 264 Query: 290 ---------------------SINTDHILFIASGAF--------------HVSRPADL-- 312 I+T ++LFI SGAF + A+L Sbjct: 265 GEGHSRSGQRPSQATPKPDTYQIDTSNVLFILSGAFVGLDKVIKQRVAKGSIGFTANLTS 324 Query: 313 ------LP----------------------------EIQGRFPVRVHLKSLNKSDFRLIL 338 LP E R P L L SD + IL Sbjct: 325 TDGDGPLPFFTPNRKTQHNILDLVETSDLVKYGFIPEFISRLPSITALSPLTVSDLKRIL 384 Query: 339 TDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVN 376 T+ + +L+ QY+ L G+ + FT ++D + A + Sbjct: 385 TEVKGSLMSQYQSLFGYSGVEIRFTSAALDEICQKAFD 422 >gi|242088601|ref|XP_002440133.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor] gi|241945418|gb|EES18563.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor] Length = 546 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 68/239 (28%) Query: 244 YGIVFLDEFDKIVARDSG--NGIGVSREGVQRDLLPLVEGSSVSTK-----------YGS 290 +GIV++DE DK+ + + VS EGVQ+ LL + EG+ +S Y Sbjct: 228 HGIVYIDEVDKLTKKADCREDRRDVSGEGVQQALLKIFEGTVISVPRKRSQDNMPQGYVE 287 Query: 291 INTDHILFIASGAF----------------------HVSRPAD----------------- 311 +NT +ILFI GAF H R Sbjct: 288 VNTRNILFICGGAFFGLEKIVAERHQHPVGFGIPICHELRNCSWTTALQESCSIDTVEND 347 Query: 312 ------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTED 365 L+PE GR P+ V L +L++ +L + ++ + QYK+L K + L FT++ Sbjct: 348 DLIAYGLIPEFIGRLPITVGLNNLSEEQLVQVLREPKNAIGKQYKKLFKMNDVKLYFTDN 407 Query: 366 SIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEK-----TVVIDAEYV 419 ++ +A A + GAR L+++ME +L + F D +E V++D E V Sbjct: 408 ALRMIAKKA-----AAKETGARGLRSIMEDILTEAMFEIPDAREGKEKVIAVLVDEESV 461 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT +++ LAR PF+ + T T+ GY G +VE +I L+ Sbjct: 159 ELEKSNILLIGPTGTGKTLLAKTLARYVNVPFVIADATAITQAGYSGEDVESVIYKLLVA 218 Query: 110 A 110 A Sbjct: 219 A 219 >gi|322694066|gb|EFY85906.1| putative MCX1 protein [Metarhizium acridum CQMa 102] Length = 575 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 99/260 (38%), Gaps = 104/260 (40%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS----------------SVSTK 287 YGIV LDEFDK+ R+S G V EGVQ+ LL LVEG+ ++T Sbjct: 261 YGIVVLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINVKDNRSSRSTPPITTN 320 Query: 288 YG---------------------SINTDHILFIASGAF---------HVSRPA------- 310 Y +I+T +ILF+ GAF V+RP+ Sbjct: 321 YSSGGSSSSAPQAVPPGGKVDQYTIDTSNILFVFCGAFVGLDKAVLQRVARPSMGFGGEL 380 Query: 311 ------------------------DLLPEIQ----------------------GRFPVRV 324 D +PE GR Sbjct: 381 RGRSTLSGSKHILPPSVYAHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNIC 440 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L L+ SD +LT+ ++L+ QY L +T L FTE ++ A+A+ A + + Sbjct: 441 ALSPLSTSDLLRVLTEPRNSLVAQYTALFETYPSRLHFTEKALYAIAERAAAIGT----- 495 Query: 385 GARRLQTVMERVLEDISFSA 404 GAR L+ MERVL + F A Sbjct: 496 GARGLKMEMERVLAEPMFDA 515 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + T+ GY+G++VE I L+ Sbjct: 197 NLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLL 249 >gi|145608352|ref|XP_360644.2| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15] gi|145015830|gb|EDK00320.1| hypothetical protein MGG_03187 [Magnaporthe oryzae 70-15] Length = 574 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 125/514 (24%), Positives = 187/514 (36%), Gaps = 159/514 (30%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 F PR++ LD +++GQ+ AK+ + N ++ Q+ ++ DE + L+ Sbjct: 72 QFYPRDLKRRLDEFVVGQERAKKTTTSVVFNHYQGQRRRQNIEDERRVEEERLLRQQHFQ 131 Query: 66 KTAISRRLARLAGAPFIKVEVTKFT-----EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 + A G P K+E E + G + + + L + + V E RD Sbjct: 132 RARREPHPAEGQGHPESKLERKPNADNLGFEDDFPGHH--ESAQGLHEQDPSFVEEFLRD 189 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 + R+ + ++ L +G T T V + V T SD ++F Sbjct: 190 DARDSRHVTIQKSNL-LCIGPTGVGKTYIVEH--------------LNVPFTISDCNSFT 234 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 G I V+ C L LI+ D + Sbjct: 235 QAG-----------------------YIGQDVEACIERL-------LIEADY----DVNA 260 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------------- 284 EN GIV LDEFDK+ R+S NG V EGVQ+ LL LVEGS V Sbjct: 261 AEN-GIVVLDEFDKLARRESVNGRDVGGEGVQQALLKLVEGSKVTVNVKDTRSSRSPSPI 319 Query: 285 STKYG-------------------SINTDHILFIASGAF--------------------- 304 ++ Y +I+T +ILFI GAF Sbjct: 320 TSNYNGGSQTSQSSPPPGPRVEQITIDTTNILFIFCGAFVGLDKIVLRRVAKPTIGFGSE 379 Query: 305 --------------------HVSRP-------------ADL-----LPEIQGRFPVRVHL 326 H+ +P ADL +PE+ GR L Sbjct: 380 PIRNGDALPREMYAHLPHQPHMVKPGTSGFTPLDLTTPADLQAFGFIPELIGRIHNICAL 439 Query: 327 KSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGA 386 L+ + ILT+ ++L+ QYK L +T L FT ++ A+A+ A + GA Sbjct: 440 TPLSLDELLRILTEPRNSLVAQYKALFETYPSRLFFTSRALYAIAERAAK-----NETGA 494 Query: 387 RRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 R L+ MERVL + F D VVID V+ Sbjct: 495 RGLKMEMERVLAEPMF---DAPMPYVVIDEACVK 525 >gi|157138274|ref|XP_001664208.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti] gi|108869543|gb|EAT33768.1| ATP-dependent clp protease atp-binding subunit clpx [Aedes aegypti] Length = 633 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 103/248 (41%), Gaps = 83/248 (33%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 353 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 406 Query: 291 ----INTDHILFIASGAF-----------------------------------------H 305 ++T +ILF+ASGA+ Sbjct: 407 ETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGFGMPASSSEGRRAAQASAAPMDNDQ 466 Query: 306 VSRPADL-------------LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL 352 V R A+L +PE GRFPV V SL+ ILT+ + L+ QYK L Sbjct: 467 VERDANLRKVQAKDLVEFGMIPEFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKAL 526 Query: 353 MKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTV 412 + + + L F E ++ +A +A+ + GAR L+ +ME +L + F +TV Sbjct: 527 LGMDQVELTFAEGALKQIAQLAMERQT-----GARGLRAIMETLLLEPMFEVPGSDVQTV 581 Query: 413 VIDAEYVR 420 I + VR Sbjct: 582 HITEDCVR 589 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A Sbjct: 288 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 343 >gi|328352816|emb|CCA39214.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pichia pastoris CBS 7435] Length = 565 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 31/131 (23%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50 +P+++ LDR+I+GQ+ K+ +++A+ + R A R++ Sbjct: 104 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 163 Query: 51 --------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 L N+LL+GP+G GKT I++ LA+ PFI + T T+ GYVG Sbjct: 164 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 223 Query: 97 RNVEQIIRDLV 107 ++E I L+ Sbjct: 224 EDIESCIEKLL 234 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L D +LT+ ++++ QY T + L T +I +A Sbjct: 379 LIPELIGRLPIVSSLSPLTVDDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIA 438 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431 ++++ N T GAR L+ ++E++L + + V++D + + I D ET Sbjct: 439 EISIK-NGT----GARGLRAILEKLLLNAKYDCPGSSISFVLVDTDVISKSI-DENKETG 492 Query: 432 MYHF 435 + F Sbjct: 493 EFVF 496 >gi|254572115|ref|XP_002493167.1| Mitochondrial ATP-binding protein, possibly a mitochondrial chaperone with non-proteolytic function [Pichia pastoris GS115] gi|238032965|emb|CAY70988.1| Mitochondrial ATP-binding protein, possibly a mitochondrial chaperone with non-proteolytic function [Pichia pastoris GS115] Length = 600 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 31/131 (23%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----------------- 50 +P+++ LDR+I+GQ+ K+ +++A+ + R A R++ Sbjct: 122 TPKQLKQYLDRFIVGQEKCKKIMSVAVYTHYVRINNQAQKRNQKVDSSEENVENGFPNVT 181 Query: 51 --------------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 L N+LL+GP+G GKT I++ LA+ PFI + T T+ GYVG Sbjct: 182 KEFEDENDPDYVPDLEKSNVLLLGPSGSGKTLIAKTLAKCLQVPFIIQDCTSLTQAGYVG 241 Query: 97 RNVEQIIRDLV 107 ++E I L+ Sbjct: 242 EDIESCIEKLL 252 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P+ L L D +LT+ ++++ QY T + L T +I +A Sbjct: 414 LIPELIGRLPIVSSLSPLTVDDLVAVLTEPRNSILKQYVHFFDTVNVKLAITSKAIRRIA 473 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETD 431 ++++ N T GAR L+ ++E++L + + V++D + + I D ET Sbjct: 474 EISIK-NGT----GARGLRAILEKLLLNAKYDCPGSSISFVLVDTDVISKSI-DENKETG 527 Query: 432 MYHF 435 + F Sbjct: 528 EFVF 531 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGSINT-DHILFIASG 302 GI+ LDE DK+ G ++ EGVQ+ LL LVEG++V+ + N DH F +G Sbjct: 265 GIIVLDEIDKLAKPSVYTGTKDIAGEGVQQGLLKLVEGTTVTVQCKRSNAPDHNQFGLNG 324 >gi|282852260|ref|ZP_06261607.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282556594|gb|EFB62209.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 90 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 56/89 (62%) Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 + D +++L+ QY L+K +GI L FT+++ID +A +A +N +IGARRL T++E++L Sbjct: 1 MKDPQNSLLKQYIALLKADGIKLVFTQEAIDRIAQIAFEVNQGTDNIGARRLATILEKLL 60 Query: 398 EDISFSASDLQEKTVVIDAEYVRLHIGDF 426 ED+ + D+ + I +YV + D Sbjct: 61 EDVLYEGPDMNMGEITITQKYVDQKLSDI 89 >gi|148990170|ref|ZP_01821401.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP6-BS73] gi|147924437|gb|EDK75526.1| ATP-dependent protease ATP-binding subunit [Streptococcus pneumoniae SP6-BS73] Length = 289 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 55/208 (26%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ SV + G + Sbjct: 58 GIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQV 117 Query: 292 NTDHILFIASGAF-------------------HVSRPAD------------------LLP 314 +T +ILFI GAF ++ D ++P Sbjct: 118 DTKNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIP 177 Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A+ A Sbjct: 178 ELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKA 237 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISF 402 + + GAR L++++E + D+ F Sbjct: 238 IERKT-----GARGLRSIIEETMLDVMF 260 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 G GKT +++ LA+ PF + T TE GYVG +VE I+ L+ VA NI R R Sbjct: 1 GSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERAER 57 >gi|319789499|ref|YP_004151132.1| ATPase associated with various cellular activities AAA_5 [Thermovibrio ammonificans HB-1] gi|317114001|gb|ADU96491.1| ATPase associated with various cellular activities AAA_5 [Thermovibrio ammonificans HB-1] Length = 560 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 19/183 (10%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK----YGSINTDHILFI 299 +GIVF+DE DKI+ ++S N +Q LL +VEG+ V+ + +++T H+ FI Sbjct: 231 FGIVFIDEIDKILIQESENSFYT---WLQNFLLTMVEGTVVTGETEREVKTMDTSHLTFI 287 Query: 300 ASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG-I 358 +GAF + P D PE +GR V V L L + E I + K+ G + Sbjct: 288 FAGAFSQTSPDDFFPEFRGRLNVTVKFNELG-------LEELEQ--IARLKDFAGFMGDL 338 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAE 417 + D+ A+A+ A LN +GARR+ V+ +V +S A VV+D Sbjct: 339 FVKVEPDAYKAVAEEAFRLNRDCY-LGARRVDEVISKVNAALSRELALGRLSLPVVVDYS 397 Query: 418 YVR 420 YV+ Sbjct: 398 YVK 400 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71 I +E+ + ++GQ + + V A+ L + R + NILLVGPTG GKT ++R Sbjct: 13 ISAEISKELVGQDEGVKKVVTAICENLE-SYLSGNSR-KTAKNNILLVGPTGSGKTELAR 70 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 R++ L PF++V +T +T GY GR+ + I+ Sbjct: 71 RISELLDLPFVRVNITDYTLTGYKGRDPQSIV 102 >gi|328707305|ref|XP_003243358.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|328707307|ref|XP_001949996.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like isoform 1 [Acyrthosiphon pisum] Length = 556 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 50/152 (32%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------QQLPADL---RDE 50 P+EI L++Y+IGQ+ AK+ +A+A+ N +R Q+L +L R+ Sbjct: 124 PKEIFVNLNKYVIGQELAKKVLAVAVYNHCKRIIHNITTPKKNDVIDQRLLDNLQNSREN 183 Query: 51 L-------MPK-------------------------NILLVGPTGVGKTAISRRLARLAG 78 L MP+ NI+L+GPTG GKT +++ +A+ Sbjct: 184 LSNNHIFGMPQMDSTKNNQDEIKITSIFEDTLLEKSNIILLGPTGCGKTLLAQTIAKQLD 243 Query: 79 APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PF + T T+ GYVG ++E +I L+ A Sbjct: 244 VPFAICDCTNLTQAGYVGEDIESVIGKLLQAA 275 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 7/107 (6%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V SLN++ ILT+ +++ + Q+K L + + L FT++++ A+A Sbjct: 426 MIPEFVGRFPVLVPFHSLNRNLLVRILTEPKNSTVKQFKLLFGLDKVELTFTDEALRAIA 485 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L+ ++E +L D F SD+ V DA Sbjct: 486 SQALEKKT-----GARGLRAIVESILLDPMFEIPGSDVVSVHVTEDA 527 >gi|52855560|gb|AAU88654.1| clp protease ATP-binding subunit [Escherichia coli] Length = 222 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 13/96 (13%) Query: 31 AIALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83 A+A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 AVAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM 54 Query: 84 VEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 ADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 90 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 91 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 150 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 151 DTSKILFICGGAF 163 >gi|328771874|gb|EGF81913.1| hypothetical protein BATDEDRAFT_34654 [Batrachochytrium dendrobatidis JAM81] Length = 746 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 69/252 (27%) Query: 245 GIVFLDEFDKIVARD---SGNGIGVSREGVQRDLLPLVEGS--SVSTKYG---------- 289 GIVF+DE DKI R + N VS EGVQ+ LL ++EG+ +++ K G Sbjct: 445 GIVFIDEIDKISRRSDASNPNQRDVSGEGVQQGLLRMLEGTVVNITVKAGATGAKRSATQ 504 Query: 290 -----SINTDHILFIASGAF--------------------------------------HV 306 S++T +ILFI SGAF H Sbjct: 505 GSEVFSVDTSNILFICSGAFVGLDKIVQSRTGVKGSIGFDAPLTQTHCSETTNKLNPFHS 564 Query: 307 SRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILD 361 P DL+ PE GR P+ L+ + IL + ++ ++ QY+E+ + + L Sbjct: 565 VEPDDLIKFGFIPEFIGRLPIIASSDPLSVEELERILVEPKNAIVKQYQEIFRRSNLELL 624 Query: 362 FTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRL 421 ++ +A +A NS GAR L+ ++E L+D + + K +V+D + V Sbjct: 625 VHPLALRKIATLATAKNS-----GARGLRRIIESALQDALYEYPGSEYKYIVLDEDAVVT 679 Query: 422 -HIGDFPSETDM 432 +G F E M Sbjct: 680 GKVGHFKQEKYM 691 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 54/146 (36%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRR-----------------------------QQLPAD 46 LD++++GQ+ K+A+++A+ N ++R Q + + Sbjct: 287 LDQHVVGQERLKKALSVAIYNHYKRVDHNCGTSATEIDPREGMTEYLFDFAKLSQWVYPN 346 Query: 47 LRDELMPK-------------------------NILLVGPTGVGKTAISRRLARLAGAPF 81 ELM + NILL+GPTG GKT I++ +A++ PF Sbjct: 347 YCFELMSRFTGDTVKKRGRPSAVDVEPLTIDKSNILLLGPTGSGKTLIAKTVAKILNVPF 406 Query: 82 IKVEVTKFTEIGYVGRNVEQIIRDLV 107 + T FT+ GYVG +VE I L+ Sbjct: 407 SMNDATPFTQAGYVGDDVEVCIHRLL 432 >gi|227547149|ref|ZP_03977198.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212366|gb|EEI80262.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 67 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 44/60 (73%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 L+ +E+ +L++ + + +D+I VE +GIVF+DE DKI R +G VSREGVQRDLLPL Sbjct: 8 LIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPL 67 >gi|88809299|ref|ZP_01124807.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 7805] gi|88786518|gb|EAR17677.1| ATP-dependent protease ATP-binding subunit [Synechococcus sp. WH 7805] Length = 344 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 62/215 (28%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GI+++DE DKI + I VS EGVQ+ LL ++EG+ +V + G I Sbjct: 96 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQI 155 Query: 292 NTDHILFIASGAF---------HVSR------PAD------------------------- 311 +T ILFI GAF + R PAD Sbjct: 156 DTSQILFICGGAFVGLDDVVQKRMGRNAIGFVPADGRGRGKATRDLQAAQVLRHLEPDDL 215 Query: 312 ----LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 L+PE GR PV L+ L++ ILT+ L+ Q++ L+ + + L+F +I Sbjct: 216 VRYGLIPEFIGRMPVSAVLEPLDEHALESILTEPRDALVKQFRTLLSMDNVQLEFEPRAI 275 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+A A + GAR L+ ++E ++ D+ + Sbjct: 276 EAIAQEAHRRKT-----GARALRGIVEELMLDLMY 305 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%) Query: 32 IALRNRWRRQQLPADLRDE-------LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R D + E L NILL+GPTG GKT +++ LA + PF Sbjct: 1 VAVYNHYKRLAWQGDGKGETEETATRLHKSNILLIGPTGCGKTLLAQTLAEMLDVPFAVA 60 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVA 110 + T TE GYVG +VE I+ L+ A Sbjct: 61 DATTLTEAGYVGEDVENILLRLLQKA 86 >gi|221131979|ref|XP_002167314.1| PREDICTED: similar to ClpX caseinolytic protease X homolog [Hydra magnipapillata] Length = 683 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 71/241 (29%) Query: 245 GIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTKYGS----------INT 293 GI+FLDE DKI + + V EGVQ+ LL ++EG+ V+ + ++T Sbjct: 414 GIIFLDEVDKISCVSGFHQVRDVGGEGVQQGLLKMLEGTVVNVPERTSRKMRGENVPVDT 473 Query: 294 DHILFIASGAFH---------------------------------VSR--PAD------L 312 +I+F+ASGAF+ +S+ P++ L Sbjct: 474 TNIMFVASGAFNGLEDIVRRRQQDKSLGFGSSTKKKSNEIMDLQTISKLEPSERSDRDAL 533 Query: 313 LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 L +++ R P+ V + SL+ + ILT+ ++ LI QY+ L K + + Sbjct: 534 LAQVEARDLIGYGMIPEFVGRLPILVSINSLDVNALVTILTEPKNALIPQYQHLFKMDKV 593 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEY 418 L FT+D++ +A +A + GAR L++++E++L D F A + V ID + Sbjct: 594 DLHFTKDALRKIALLAQERKT-----GARGLKSILEKILLDPMFDAPGSEISAVYIDEDT 648 Query: 419 V 419 V Sbjct: 649 V 649 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A Sbjct: 349 NILLLGPTGSGKTLLAQTIAKCLDVPFAMCDCTSLTQAGYVGEDIESVITKLLQEA 404 >gi|322707680|gb|EFY99258.1| putative MCX1 protein [Metarhizium anisopliae ARSEF 23] Length = 523 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 99/260 (38%), Gaps = 104/260 (40%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGS----------------SVSTK 287 YGIV LDEFDK+ R+S G V EGVQ+ LL LVEG+ ++T Sbjct: 209 YGIVVLDEFDKLARRESPTGRDVGGEGVQQALLKLVEGTKITINVKDNRSSRSTPPITTN 268 Query: 288 YG---------------------SINTDHILFIASGAF---------HVSRPA------- 310 Y +I+T +ILF+ GAF V++P+ Sbjct: 269 YSSGGSSSSAPQAVPPGGKVDQYTIDTSNILFVFCGAFVGLDKAVLQRVAKPSMGFGGEL 328 Query: 311 ------------------------DLLPEIQ----------------------GRFPVRV 324 D +PE GR Sbjct: 329 RGRSTLSGSKHILPLSVYAHIAHHDAMPEASFTPLDLATPADLQSFGFIPELIGRLHNIC 388 Query: 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L L+ SD +LT+ ++L+ QY L +T L FTE ++ A+A+ A + + Sbjct: 389 ALSPLSTSDLLRVLTEPRNSLVAQYTALFETYPSRLRFTEKALYAIAERAAAIGT----- 443 Query: 385 GARRLQTVMERVLEDISFSA 404 GAR L+ MER+L + F A Sbjct: 444 GARGLKMEMERILAEPMFDA 463 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + T+ GY+G++VE I L+ Sbjct: 145 NLLLIGPTGVGKTYILETLSKQIHVPFSICDCNSLTQAGYIGQDVETCIERLL 197 >gi|52855662|gb|AAU88705.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 208 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855514|gb|AAU88631.1| clp protease ATP-binding subunit [Shigella boydii] Length = 219 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|331241319|ref|XP_003333308.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312298|gb|EFP88889.1| ATP-dependent Clp protease ATP-binding subunit clpX [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 584 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 15/146 (10%) Query: 289 GSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTES 343 GS NT H A PADL +PE GR PV LK+L ++D +LT+ ++ Sbjct: 398 GSGNTAHGRL--PDALEQVEPADLNAFGLIPEFIGRIPVLASLKALTENDLLRVLTEPKN 455 Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 L+ QY++L K G+ + FT + A+A +A N T GAR L+ +ME++L D ++ Sbjct: 456 CLLKQYEQLFKINGVAIKFTLPAQRAIARLA-NEKKT----GARGLRQIMEKILLDSMYT 510 Query: 404 ASDLQEKTVVIDAEYVRLHIGDFPSE 429 A + ++ID V +G P++ Sbjct: 511 APQSSIRYILIDESVV---LGQTPAK 533 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40 SPR+I ELD Y+I Q DAK+ +++A+ N + R Sbjct: 38 SPRDIHRELDNYVIAQSDAKKILSVAVFNHYIR 70 >gi|52855484|gb|AAU88616.1| clp protease ATP-binding subunit [Escherichia coli] Length = 213 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855482|gb|AAU88615.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855564|gb|AAU88656.1| clp protease ATP-binding subunit [Shigella flexneri 2a] Length = 214 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855496|gb|AAU88622.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 217 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|116204749|ref|XP_001228185.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51] gi|88176386|gb|EAQ83854.1| hypothetical protein CHGG_10258 [Chaetomium globosum CBS 148.51] Length = 579 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 103/260 (39%), Gaps = 104/260 (40%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS----------------TK 287 +GI+ LDEFDKI R++ NG V EGVQ+ LL LVEG+ V+ + Sbjct: 259 HGIIVLDEFDKIAKRETVNGRDVGGEGVQQALLKLVEGTKVTINIKDQRQSRTTNNPPSG 318 Query: 288 YG----------------SINTDHILFIASGAF---------HVSRPA------------ 310 YG +I+T +ILF+ GAF V++P+ Sbjct: 319 YGPSNPQSTPPAGKVDQYTIDTTNILFVFCGAFVGLDKTVLRRVAKPSIGFGSEVRGRSA 378 Query: 311 ------DLL-PEIQGRFPV-----------------------------------RVH--- 325 D+L PE+ P R+H Sbjct: 379 SMSGSKDILPPEMYSHLPHQPAFAGGSSGTGFTPLDLTTPADLQAYGFIPELIGRLHNIC 438 Query: 326 -LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDI 384 L L+ + ILT+ ++L+ QY L +T L+FT ++ A+A+ A + Sbjct: 439 ALTPLSLDELYRILTEPRNSLVAQYTALFETYPSKLNFTRKALTAIAERAAK-----NET 493 Query: 385 GARRLQTVMERVLEDISFSA 404 GAR L+ MERVL D + A Sbjct: 494 GARGLKMEMERVLADPMYDA 513 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE I L+ Sbjct: 195 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVESCIERLL 247 >gi|52855620|gb|AAU88684.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 197 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 8 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 67 Query: 110 AINIVRESRR 119 V++++R Sbjct: 68 CDYDVQKAQR 77 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 78 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 137 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 138 DTSKILFICGGAF 150 >gi|52855520|gb|AAU88634.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855522|gb|AAU88635.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855568|gb|AAU88658.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855604|gb|AAU88676.1| clp protease ATP-binding subunit [Shigella boydii] Length = 219 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855486|gb|AAU88617.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855510|gb|AAU88629.1| clp protease ATP-binding subunit [Shigella sonnei] gi|52855524|gb|AAU88636.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855530|gb|AAU88639.1| clp protease ATP-binding subunit [Shigella flexneri 2a] Length = 220 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855136|gb|AAU88442.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855138|gb|AAU88443.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855542|gb|AAU88645.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855570|gb|AAU88659.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 221 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 13/95 (13%) Query: 32 IALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 +A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF Sbjct: 1 VAVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 54 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + T TE GYVG +VE II+ L+ V++++R Sbjct: 55 DATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 89 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 90 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 149 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 150 DTSKILFICGGAF 162 >gi|52855688|gb|AAU88718.1| clp protease ATP-binding subunit [Shigella boydii] Length = 203 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855628|gb|AAU88688.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 202 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 13 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72 Query: 110 AINIVRESRR 119 V++++R Sbjct: 73 CDYDVQKAQR 82 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 83 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 143 DTSKILFICGGAF 155 >gi|52855626|gb|AAU88687.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 203 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|320166605|gb|EFW43504.1| ATP-dependent protease ATP-binding subunit [Capsaspora owczarzaki ATCC 30864] Length = 716 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 51/168 (30%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSV----------STKYGSINT 293 GI+FLDE DKI G + V EGVQ+ L ++EG+ V + + ++T Sbjct: 489 GIIFLDEVDKIARSYEGARVKDVGGEGVQQGFLKILEGAVVNVPDKGARKTAQNFIQLDT 548 Query: 294 DHILFIASGAFH---------VS------------------------RPADL-----LPE 315 +ILFIASGAF VS +P DL +PE Sbjct: 549 SNILFIASGAFSGLEKLVANRVSQSSLGFNASVKAQNASDMEFLGQVQPTDLQKFGMIPE 608 Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKEL--MKTEGIILD 361 GRFP+ VHL +L++ D IL + ++ LI QY+ L M+ + I++D Sbjct: 609 FIGRFPLLVHLDALSEKDLTRILVEPKNALIPQYQALFAMEKDKILVD 656 >gi|52855622|gb|AAU88685.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 202 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|196001235|ref|XP_002110485.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens] gi|190586436|gb|EDV26489.1| hypothetical protein TRIADDRAFT_50037 [Trichoplax adhaerens] Length = 563 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFPV H++SL++ ILT+ E+ L+ QYK L + + + L T+ + A+A Sbjct: 415 LIPEFVGRFPVLCHIESLDEEALMRILTEPENALLRQYKALFEMDKVQLAITDGACLAIA 474 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYV 419 +A+ + GAR L+++MER+L D F SD+ E ++ID + V Sbjct: 475 KMALQKKT-----GARGLRSIMERLLLDSMFEVPGSDIVE--IIIDEDVV 517 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 59/164 (35%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRR---------------------------- 40 PR+I L RYI+GQ+ AKR +++A+ N ++R Sbjct: 110 PRKIYDYLCRYIVGQERAKRILSVAVYNHYKRLYFNNLPVLSKPAFDKQNWKQKTDGTKD 169 Query: 41 -------------------QQLP---ADLRD------ELMPKNILLVGPTGVGKTAISRR 72 Q+ P DL D +L NI+L GPTG KT +++ Sbjct: 170 QGNLMQIRGRNATQTNQLQQETPINGTDLLDNNISALKLEKSNIVLFGPTG--KTLLAQT 227 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINIVR 115 LAR PF + T T+ GYVG ++E +I L+ D N+ R Sbjct: 228 LARCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQDANYNVSR 271 >gi|52855606|gb|AAU88677.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855614|gb|AAU88681.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855616|gb|AAU88682.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 198 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 9 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 68 Query: 110 AINIVRESRR 119 V++++R Sbjct: 69 CDYDVQKAQR 78 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 79 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 138 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 139 DTSKILFICGGAF 151 >gi|294855151|gb|ADF44513.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B827] gi|294855153|gb|ADF44514.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E1492] gi|294855155|gb|ADF44515.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E807] gi|294855157|gb|ADF44516.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. H442] gi|294855159|gb|ADF44517.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. M863] gi|294855161|gb|ADF44518.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW10509] gi|294855163|gb|ADF44519.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW11930] gi|294855165|gb|ADF44520.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW11966] gi|294855167|gb|ADF44521.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B1147] gi|294855169|gb|ADF44522.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW09231] gi|294855171|gb|ADF44523.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW09276] gi|294855173|gb|ADF44524.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW09254] gi|294855175|gb|ADF44525.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW09266] gi|294855177|gb|ADF44526.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TA04] gi|294855179|gb|ADF44527.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B685] gi|294855181|gb|ADF44528.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14182] gi|294855183|gb|ADF44529.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii TW11588] gi|294855185|gb|ADF44530.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. H605] gi|294855187|gb|ADF44531.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B49] gi|294855189|gb|ADF44532.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW09308] gi|294855191|gb|ADF44533.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B1225] gi|294855193|gb|ADF44534.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. B646] gi|294855195|gb|ADF44535.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E1118] gi|294855197|gb|ADF44536.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E1195] gi|294855199|gb|ADF44537.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E1196] gi|294855201|gb|ADF44538.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E471] gi|294855203|gb|ADF44539.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E472] gi|294855205|gb|ADF44540.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. E620] gi|294855207|gb|ADF44541.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. M1108] gi|294855209|gb|ADF44542.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TA290] gi|294855211|gb|ADF44543.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14263] gi|294855213|gb|ADF44544.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14264] gi|294855215|gb|ADF44545.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14265] gi|294855217|gb|ADF44546.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14266] gi|294855219|gb|ADF44547.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. TW14267] gi|294855221|gb|ADF44548.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. RL325/96] gi|294855223|gb|ADF44549.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia sp. Z205] gi|294855225|gb|ADF44550.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855227|gb|ADF44551.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855229|gb|ADF44552.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855231|gb|ADF44553.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855233|gb|ADF44554.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855235|gb|ADF44555.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855237|gb|ADF44556.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia albertii] gi|294855239|gb|ADF44557.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia coli] gi|294855241|gb|ADF44558.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia coli] gi|294855245|gb|ADF44560.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia fergusonii] gi|294855247|gb|ADF44561.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia fergusonii] Length = 175 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|261194559|ref|XP_002623684.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081] gi|239588222|gb|EEQ70865.1| ATP-dependent Clp protease [Ajellomyces dermatitidis SLH14081] Length = 615 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 40/153 (26%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 +P+ + LD++++GQ AK+ +++A+ N ++R Sbjct: 94 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELRAQQARRQQRTI 153 Query: 41 -------------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 LP D + K NILL+GP+GVGKT +++ LAR+ PF + Sbjct: 154 HTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDC 213 Query: 87 TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T FT+ GY+G + + + L+ A V ++ R Sbjct: 214 TPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 246 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L ILT+ ++L+ QY L GI L FT Sbjct: 436 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 495 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A+ A+++ + GAR L+T ME +L D F A K V++ Sbjct: 496 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 541 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 181 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 232 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 233 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 291 Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304 GS+N TD+ILFI SGAF Sbjct: 292 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 348 >gi|52855708|gb|AAU88728.1| clp protease ATP-binding subunit [Shigella sp. AR-21793] Length = 207 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855624|gb|AAU88686.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 204 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 16 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75 Query: 110 AINIVRESRR 119 V++++R Sbjct: 76 CDYDVQKAQR 85 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 86 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 146 DTSKILFICGGAF 158 >gi|52855694|gb|AAU88721.1| clp protease ATP-binding subunit [Shigella boydii] Length = 204 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 16 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75 Query: 110 AINIVRESRR 119 V++++R Sbjct: 76 CDYDVQKAQR 85 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 86 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 146 DTSKILFICGGAF 158 >gi|52855660|gb|AAU88704.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 205 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 16 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75 Query: 110 AINIVRESRR 119 V++++R Sbjct: 76 CDYDVQKAQR 85 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 86 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 146 DTSKILFICGGAF 158 >gi|52697084|gb|AAU86279.1| clp protease ATP-binding subunit [Escherichia albertii] gi|52855612|gb|AAU88680.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855644|gb|AAU88696.1| clp protease ATP-binding subunit [Shigella flexneri 2a] gi|52855650|gb|AAU88699.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855682|gb|AAU88715.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855690|gb|AAU88719.1| clp protease ATP-binding subunit [Shigella boydii] Length = 199 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|52697054|gb|AAU86264.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697056|gb|AAU86265.1| clp protease ATP-binding subunit [Escherichia albertii] gi|52697058|gb|AAU86266.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855698|gb|AAU88723.1| clp protease ATP-binding subunit [Shigella sonnei] Length = 204 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|302171548|gb|ADK97701.1| ATP-dependent Clp protease [Escherichia coli] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+E + + ++ + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEVTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|168983667|dbj|BAG11712.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983669|dbj|BAG11713.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52697082|gb|AAU86278.1| clp protease ATP-binding subunit [Escherichia albertii] gi|52855594|gb|AAU88671.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 201 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 11 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70 Query: 110 AINIVRESRR 119 V++++R Sbjct: 71 CDYDVQKAQR 80 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 81 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 141 DTSKILFICGGAF 153 >gi|52697086|gb|AAU86280.1| clp protease ATP-binding subunit [Escherichia albertii] gi|52855494|gb|AAU88621.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855554|gb|AAU88651.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855584|gb|AAU88666.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855634|gb|AAU88691.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 201 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|223972210|dbj|BAH23282.1| clp protease ATP-binding subunit [Escherichia coli] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855172|gb|AAU88460.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855506|gb|AAU88627.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855512|gb|AAU88630.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855702|gb|AAU88725.1| clp protease ATP-binding subunit [Shigella sonnei] Length = 202 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 11 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70 Query: 110 AINIVRESRR 119 V++++R Sbjct: 71 CDYDVQKAQR 80 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 81 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 141 DTSKILFICGGAF 153 >gi|52855596|gb|AAU88672.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855610|gb|AAU88679.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855618|gb|AAU88683.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855638|gb|AAU88693.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855640|gb|AAU88694.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855652|gb|AAU88700.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855654|gb|AAU88701.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855706|gb|AAU88727.1| clp protease ATP-binding subunit [Shigella sp. K-319] Length = 203 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|125615424|gb|ABN46172.1| clp protease ATP-binding subunit [Escherichia coli] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855674|gb|AAU88711.1| clp protease ATP-binding subunit [Shigella boydii] Length = 208 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855648|gb|AAU88698.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 202 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 13 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72 Query: 110 AINIVRESRR 119 V++++R Sbjct: 73 CDYDVQKAQR 82 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 83 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 143 DTSKILFICGGAF 155 >gi|52855526|gb|AAU88637.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 214 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELSKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|125615302|gb|ABN46111.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615304|gb|ABN46112.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615306|gb|ABN46113.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615308|gb|ABN46114.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615310|gb|ABN46115.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615312|gb|ABN46116.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615314|gb|ABN46117.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615316|gb|ABN46118.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615318|gb|ABN46119.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615320|gb|ABN46120.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615322|gb|ABN46121.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615324|gb|ABN46122.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615326|gb|ABN46123.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615328|gb|ABN46124.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615330|gb|ABN46125.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615332|gb|ABN46126.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615334|gb|ABN46127.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615336|gb|ABN46128.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615338|gb|ABN46129.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615340|gb|ABN46130.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615342|gb|ABN46131.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615344|gb|ABN46132.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615346|gb|ABN46133.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615348|gb|ABN46134.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615350|gb|ABN46135.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615352|gb|ABN46136.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615354|gb|ABN46137.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615356|gb|ABN46138.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615358|gb|ABN46139.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615360|gb|ABN46140.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615362|gb|ABN46141.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615364|gb|ABN46142.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615366|gb|ABN46143.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615368|gb|ABN46144.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615370|gb|ABN46145.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615372|gb|ABN46146.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615374|gb|ABN46147.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615376|gb|ABN46148.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615378|gb|ABN46149.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615380|gb|ABN46150.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615382|gb|ABN46151.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615384|gb|ABN46152.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615386|gb|ABN46153.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615388|gb|ABN46154.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615390|gb|ABN46155.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615392|gb|ABN46156.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615394|gb|ABN46157.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615396|gb|ABN46158.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615398|gb|ABN46159.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615400|gb|ABN46160.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615402|gb|ABN46161.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615404|gb|ABN46162.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615406|gb|ABN46163.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615408|gb|ABN46164.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615410|gb|ABN46165.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615412|gb|ABN46166.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615414|gb|ABN46167.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615416|gb|ABN46168.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615418|gb|ABN46169.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615420|gb|ABN46170.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615422|gb|ABN46171.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615426|gb|ABN46173.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615428|gb|ABN46174.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615430|gb|ABN46175.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615432|gb|ABN46176.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615434|gb|ABN46177.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615436|gb|ABN46178.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615438|gb|ABN46179.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615440|gb|ABN46180.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615442|gb|ABN46181.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615444|gb|ABN46182.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615446|gb|ABN46183.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615448|gb|ABN46184.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615450|gb|ABN46185.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615452|gb|ABN46186.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615454|gb|ABN46187.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615456|gb|ABN46188.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615458|gb|ABN46189.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615460|gb|ABN46190.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615462|gb|ABN46191.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615464|gb|ABN46192.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615466|gb|ABN46193.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615468|gb|ABN46194.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615470|gb|ABN46195.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615472|gb|ABN46196.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615474|gb|ABN46197.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615476|gb|ABN46198.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615478|gb|ABN46199.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615480|gb|ABN46200.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615482|gb|ABN46201.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615484|gb|ABN46202.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615486|gb|ABN46203.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615488|gb|ABN46204.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615490|gb|ABN46205.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615492|gb|ABN46206.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615494|gb|ABN46207.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615496|gb|ABN46208.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615498|gb|ABN46209.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615500|gb|ABN46210.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615502|gb|ABN46211.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615504|gb|ABN46212.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615506|gb|ABN46213.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615508|gb|ABN46214.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615510|gb|ABN46215.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615512|gb|ABN46216.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615514|gb|ABN46217.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615516|gb|ABN46218.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615518|gb|ABN46219.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615520|gb|ABN46220.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615522|gb|ABN46221.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615524|gb|ABN46222.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615526|gb|ABN46223.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615528|gb|ABN46224.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615530|gb|ABN46225.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615532|gb|ABN46226.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615534|gb|ABN46227.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615536|gb|ABN46228.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615538|gb|ABN46229.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615540|gb|ABN46230.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615542|gb|ABN46231.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615544|gb|ABN46232.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615546|gb|ABN46233.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615548|gb|ABN46234.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615550|gb|ABN46235.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615552|gb|ABN46236.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615554|gb|ABN46237.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615556|gb|ABN46238.1| clp protease ATP-binding subunit [Escherichia coli] gi|125615558|gb|ABN46239.1| clp protease ATP-binding subunit [Escherichia coli] gi|134290119|gb|ABO70250.1| CplX [Escherichia coli] gi|134290121|gb|ABO70251.1| CplX [Escherichia coli] gi|134290123|gb|ABO70252.1| CplX [Escherichia coli] gi|134290125|gb|ABO70253.1| CplX [Escherichia coli] gi|134290127|gb|ABO70254.1| CplX [Escherichia coli] gi|134290129|gb|ABO70255.1| CplX [Escherichia coli] gi|134290131|gb|ABO70256.1| CplX [Escherichia coli] gi|134290133|gb|ABO70257.1| CplX [Escherichia coli] gi|134290135|gb|ABO70258.1| CplX [Escherichia coli] gi|134290137|gb|ABO70259.1| CplX [Escherichia coli] gi|134290139|gb|ABO70260.1| CplX [Escherichia coli] gi|134290141|gb|ABO70261.1| CplX [Escherichia coli] gi|134290143|gb|ABO70262.1| CplX [Escherichia coli] gi|134290145|gb|ABO70263.1| CplX [Escherichia coli] gi|134290147|gb|ABO70264.1| CplX [Escherichia coli] gi|134290149|gb|ABO70265.1| CplX [Escherichia coli] gi|134290151|gb|ABO70266.1| CplX [Escherichia coli] gi|134290153|gb|ABO70267.1| CplX [Escherichia coli] gi|134290155|gb|ABO70268.1| CplX [Escherichia coli] gi|134290157|gb|ABO70269.1| CplX [Escherichia coli] gi|134290159|gb|ABO70270.1| CplX [Escherichia coli] gi|134290161|gb|ABO70271.1| CplX [Escherichia coli] gi|134290163|gb|ABO70272.1| CplX [Escherichia coli] gi|168983657|dbj|BAG11707.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983659|dbj|BAG11708.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983661|dbj|BAG11709.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983663|dbj|BAG11710.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983665|dbj|BAG11711.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H7] gi|168983671|dbj|BAG11714.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H6] gi|168983673|dbj|BAG11715.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H6] gi|168983675|dbj|BAG11716.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Escherichia coli O55:H6] gi|223972206|dbj|BAH23280.1| clp protease ATP-binding subunit [Escherichia coli] gi|223972208|dbj|BAH23281.1| clp protease ATP-binding subunit [Escherichia coli] gi|223972212|dbj|BAH23283.1| clp protease ATP-binding subunit [Escherichia coli] gi|239829713|gb|ACS28706.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829715|gb|ACS28707.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829717|gb|ACS28708.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829719|gb|ACS28709.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829721|gb|ACS28710.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829723|gb|ACS28711.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829725|gb|ACS28712.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829727|gb|ACS28713.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829729|gb|ACS28714.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829731|gb|ACS28715.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829733|gb|ACS28716.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829735|gb|ACS28717.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829737|gb|ACS28718.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829739|gb|ACS28719.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829741|gb|ACS28720.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829743|gb|ACS28721.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829745|gb|ACS28722.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829747|gb|ACS28723.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829749|gb|ACS28724.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829751|gb|ACS28725.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829753|gb|ACS28726.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829755|gb|ACS28727.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829757|gb|ACS28728.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829759|gb|ACS28729.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829761|gb|ACS28730.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829763|gb|ACS28731.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829765|gb|ACS28732.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829767|gb|ACS28733.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829769|gb|ACS28734.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829771|gb|ACS28735.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829773|gb|ACS28736.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829775|gb|ACS28737.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829777|gb|ACS28738.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829779|gb|ACS28739.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829781|gb|ACS28740.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829783|gb|ACS28741.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829785|gb|ACS28742.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829787|gb|ACS28743.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829789|gb|ACS28744.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829791|gb|ACS28745.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829793|gb|ACS28746.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829795|gb|ACS28747.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829797|gb|ACS28748.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829799|gb|ACS28749.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829801|gb|ACS28750.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829803|gb|ACS28751.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829805|gb|ACS28752.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829807|gb|ACS28753.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829809|gb|ACS28754.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829811|gb|ACS28755.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829813|gb|ACS28756.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829815|gb|ACS28757.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829817|gb|ACS28758.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829819|gb|ACS28759.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829821|gb|ACS28760.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829823|gb|ACS28761.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829825|gb|ACS28762.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829827|gb|ACS28763.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829829|gb|ACS28764.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829831|gb|ACS28765.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829833|gb|ACS28766.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829835|gb|ACS28767.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829837|gb|ACS28768.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829839|gb|ACS28769.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829841|gb|ACS28770.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829843|gb|ACS28771.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829845|gb|ACS28772.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829847|gb|ACS28773.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829849|gb|ACS28774.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829851|gb|ACS28775.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829853|gb|ACS28776.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829855|gb|ACS28777.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829857|gb|ACS28778.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829859|gb|ACS28779.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829861|gb|ACS28780.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829863|gb|ACS28781.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829865|gb|ACS28782.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829867|gb|ACS28783.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829869|gb|ACS28784.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829871|gb|ACS28785.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829873|gb|ACS28786.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829875|gb|ACS28787.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829877|gb|ACS28788.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829879|gb|ACS28789.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829881|gb|ACS28790.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829883|gb|ACS28791.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829885|gb|ACS28792.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829887|gb|ACS28793.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829889|gb|ACS28794.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829891|gb|ACS28795.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829893|gb|ACS28796.1| ATP-dependent Clp protease protein [Escherichia coli] gi|239829895|gb|ACS28797.1| ATP-dependent Clp protease protein [Escherichia coli] gi|258642951|gb|ACV86039.1| ATP-dependent Clp protease [Shigella flexneri] gi|297494744|gb|ADI41098.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494746|gb|ADI41099.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494748|gb|ADI41100.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494750|gb|ADI41101.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494752|gb|ADI41102.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494754|gb|ADI41103.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494756|gb|ADI41104.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494758|gb|ADI41105.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494760|gb|ADI41106.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494762|gb|ADI41107.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494764|gb|ADI41108.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494766|gb|ADI41109.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494768|gb|ADI41110.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494772|gb|ADI41112.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494774|gb|ADI41113.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494776|gb|ADI41114.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494778|gb|ADI41115.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494780|gb|ADI41116.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494782|gb|ADI41117.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494784|gb|ADI41118.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494786|gb|ADI41119.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494788|gb|ADI41120.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494790|gb|ADI41121.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494792|gb|ADI41122.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494794|gb|ADI41123.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494796|gb|ADI41124.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494798|gb|ADI41125.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494800|gb|ADI41126.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494802|gb|ADI41127.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494804|gb|ADI41128.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494806|gb|ADI41129.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494808|gb|ADI41130.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494810|gb|ADI41131.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494812|gb|ADI41132.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494814|gb|ADI41133.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494816|gb|ADI41134.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494818|gb|ADI41135.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494820|gb|ADI41136.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494822|gb|ADI41137.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494824|gb|ADI41138.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494826|gb|ADI41139.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494828|gb|ADI41140.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494830|gb|ADI41141.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494832|gb|ADI41142.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494834|gb|ADI41143.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494836|gb|ADI41144.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494838|gb|ADI41145.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494840|gb|ADI41146.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494842|gb|ADI41147.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494844|gb|ADI41148.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494846|gb|ADI41149.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494848|gb|ADI41150.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494850|gb|ADI41151.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494852|gb|ADI41152.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494854|gb|ADI41153.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494856|gb|ADI41154.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494858|gb|ADI41155.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494860|gb|ADI41156.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494862|gb|ADI41157.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494864|gb|ADI41158.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494866|gb|ADI41159.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494868|gb|ADI41160.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494870|gb|ADI41161.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494872|gb|ADI41162.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494874|gb|ADI41163.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494876|gb|ADI41164.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494878|gb|ADI41165.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494880|gb|ADI41166.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494882|gb|ADI41167.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494884|gb|ADI41168.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494886|gb|ADI41169.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494888|gb|ADI41170.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494890|gb|ADI41171.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494892|gb|ADI41172.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494894|gb|ADI41173.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494896|gb|ADI41174.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494898|gb|ADI41175.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494900|gb|ADI41176.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494902|gb|ADI41177.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494904|gb|ADI41178.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494906|gb|ADI41179.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494908|gb|ADI41180.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494910|gb|ADI41181.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494912|gb|ADI41182.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494914|gb|ADI41183.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494916|gb|ADI41184.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494918|gb|ADI41185.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494920|gb|ADI41186.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494922|gb|ADI41187.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494924|gb|ADI41188.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494926|gb|ADI41189.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494928|gb|ADI41190.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494930|gb|ADI41191.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494932|gb|ADI41192.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494934|gb|ADI41193.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494936|gb|ADI41194.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494938|gb|ADI41195.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494940|gb|ADI41196.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494942|gb|ADI41197.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494944|gb|ADI41198.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494946|gb|ADI41199.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494948|gb|ADI41200.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494950|gb|ADI41201.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494952|gb|ADI41202.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494954|gb|ADI41203.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494956|gb|ADI41204.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494958|gb|ADI41205.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494960|gb|ADI41206.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494962|gb|ADI41207.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494964|gb|ADI41208.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494966|gb|ADI41209.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494968|gb|ADI41210.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494970|gb|ADI41211.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494972|gb|ADI41212.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494974|gb|ADI41213.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494976|gb|ADI41214.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494978|gb|ADI41215.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494980|gb|ADI41216.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494982|gb|ADI41217.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494984|gb|ADI41218.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494986|gb|ADI41219.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494988|gb|ADI41220.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494990|gb|ADI41221.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494992|gb|ADI41222.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494994|gb|ADI41223.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494996|gb|ADI41224.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297494998|gb|ADI41225.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495000|gb|ADI41226.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495002|gb|ADI41227.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495004|gb|ADI41228.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495006|gb|ADI41229.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495008|gb|ADI41230.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495010|gb|ADI41231.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495012|gb|ADI41232.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495014|gb|ADI41233.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495016|gb|ADI41234.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495018|gb|ADI41235.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495020|gb|ADI41236.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495022|gb|ADI41237.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495024|gb|ADI41238.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495026|gb|ADI41239.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495028|gb|ADI41240.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495030|gb|ADI41241.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495032|gb|ADI41242.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495034|gb|ADI41243.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495036|gb|ADI41244.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495038|gb|ADI41245.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495040|gb|ADI41246.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495042|gb|ADI41247.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495044|gb|ADI41248.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495046|gb|ADI41249.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495048|gb|ADI41250.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495050|gb|ADI41251.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495052|gb|ADI41252.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495054|gb|ADI41253.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495056|gb|ADI41254.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495058|gb|ADI41255.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495060|gb|ADI41256.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495062|gb|ADI41257.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495064|gb|ADI41258.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495066|gb|ADI41259.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495068|gb|ADI41260.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495070|gb|ADI41261.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495072|gb|ADI41262.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495074|gb|ADI41263.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495076|gb|ADI41264.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495078|gb|ADI41265.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495080|gb|ADI41266.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495082|gb|ADI41267.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495084|gb|ADI41268.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495086|gb|ADI41269.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495088|gb|ADI41270.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495090|gb|ADI41271.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495092|gb|ADI41272.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495094|gb|ADI41273.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495096|gb|ADI41274.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495098|gb|ADI41275.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495100|gb|ADI41276.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495102|gb|ADI41277.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495106|gb|ADI41279.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495108|gb|ADI41280.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495110|gb|ADI41281.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495112|gb|ADI41282.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495114|gb|ADI41283.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495116|gb|ADI41284.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495118|gb|ADI41285.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495120|gb|ADI41286.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495122|gb|ADI41287.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495124|gb|ADI41288.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495126|gb|ADI41289.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495128|gb|ADI41290.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495130|gb|ADI41291.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495132|gb|ADI41292.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495134|gb|ADI41293.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495136|gb|ADI41294.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495138|gb|ADI41295.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495140|gb|ADI41296.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495142|gb|ADI41297.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495144|gb|ADI41298.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495146|gb|ADI41299.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495148|gb|ADI41300.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495150|gb|ADI41301.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495152|gb|ADI41302.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495154|gb|ADI41303.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495156|gb|ADI41304.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495158|gb|ADI41305.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495160|gb|ADI41306.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495162|gb|ADI41307.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495164|gb|ADI41308.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495166|gb|ADI41309.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495168|gb|ADI41310.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495170|gb|ADI41311.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495172|gb|ADI41312.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495174|gb|ADI41313.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495176|gb|ADI41314.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495178|gb|ADI41315.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495180|gb|ADI41316.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495182|gb|ADI41317.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495184|gb|ADI41318.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495186|gb|ADI41319.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495188|gb|ADI41320.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495190|gb|ADI41321.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495192|gb|ADI41322.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495194|gb|ADI41323.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495196|gb|ADI41324.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495198|gb|ADI41325.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495200|gb|ADI41326.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495202|gb|ADI41327.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495204|gb|ADI41328.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495206|gb|ADI41329.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495208|gb|ADI41330.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495210|gb|ADI41331.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495212|gb|ADI41332.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495214|gb|ADI41333.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495216|gb|ADI41334.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495218|gb|ADI41335.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495220|gb|ADI41336.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495222|gb|ADI41337.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495224|gb|ADI41338.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495226|gb|ADI41339.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495230|gb|ADI41341.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495232|gb|ADI41342.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495234|gb|ADI41343.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495236|gb|ADI41344.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495238|gb|ADI41345.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495240|gb|ADI41346.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495242|gb|ADI41347.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495244|gb|ADI41348.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495246|gb|ADI41349.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495248|gb|ADI41350.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495250|gb|ADI41351.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495252|gb|ADI41352.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495254|gb|ADI41353.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495256|gb|ADI41354.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495258|gb|ADI41355.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495260|gb|ADI41356.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495262|gb|ADI41357.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495264|gb|ADI41358.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495266|gb|ADI41359.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495268|gb|ADI41360.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495270|gb|ADI41361.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495272|gb|ADI41362.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495274|gb|ADI41363.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495276|gb|ADI41364.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495278|gb|ADI41365.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495280|gb|ADI41366.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495282|gb|ADI41367.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495284|gb|ADI41368.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495286|gb|ADI41369.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495288|gb|ADI41370.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495290|gb|ADI41371.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495292|gb|ADI41372.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495294|gb|ADI41373.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495296|gb|ADI41374.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495298|gb|ADI41375.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495300|gb|ADI41376.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495302|gb|ADI41377.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495304|gb|ADI41378.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495306|gb|ADI41379.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495308|gb|ADI41380.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495310|gb|ADI41381.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495312|gb|ADI41382.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495314|gb|ADI41383.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495316|gb|ADI41384.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495318|gb|ADI41385.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495320|gb|ADI41386.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495322|gb|ADI41387.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495324|gb|ADI41388.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495326|gb|ADI41389.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495328|gb|ADI41390.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495330|gb|ADI41391.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495332|gb|ADI41392.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495334|gb|ADI41393.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495336|gb|ADI41394.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495338|gb|ADI41395.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495340|gb|ADI41396.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495342|gb|ADI41397.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495344|gb|ADI41398.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495346|gb|ADI41399.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495348|gb|ADI41400.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495350|gb|ADI41401.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495352|gb|ADI41402.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495354|gb|ADI41403.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495356|gb|ADI41404.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495358|gb|ADI41405.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495360|gb|ADI41406.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495362|gb|ADI41407.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495364|gb|ADI41408.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495366|gb|ADI41409.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495368|gb|ADI41410.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495370|gb|ADI41411.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495372|gb|ADI41412.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495374|gb|ADI41413.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495376|gb|ADI41414.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495378|gb|ADI41415.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495380|gb|ADI41416.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495382|gb|ADI41417.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495384|gb|ADI41418.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495386|gb|ADI41419.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495388|gb|ADI41420.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495390|gb|ADI41421.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495392|gb|ADI41422.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495394|gb|ADI41423.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495396|gb|ADI41424.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495398|gb|ADI41425.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495400|gb|ADI41426.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495402|gb|ADI41427.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495404|gb|ADI41428.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495406|gb|ADI41429.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495408|gb|ADI41430.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495410|gb|ADI41431.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495412|gb|ADI41432.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495414|gb|ADI41433.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495416|gb|ADI41434.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495418|gb|ADI41435.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495420|gb|ADI41436.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495422|gb|ADI41437.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495424|gb|ADI41438.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495426|gb|ADI41439.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495428|gb|ADI41440.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495430|gb|ADI41441.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495432|gb|ADI41442.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495434|gb|ADI41443.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495436|gb|ADI41444.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495438|gb|ADI41445.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495440|gb|ADI41446.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495442|gb|ADI41447.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495444|gb|ADI41448.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495446|gb|ADI41449.1| ATP-dependent Clp protease protein [Escherichia coli] gi|297495448|gb|ADI41450.1| ATP-dependent Clp protease protein [Escherichia coli] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855672|gb|AAU88710.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855696|gb|AAU88722.1| clp protease ATP-binding subunit [Shigella sonnei] Length = 203 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52697060|gb|AAU86267.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697066|gb|AAU86270.1| clp protease ATP-binding subunit [Shigella boydii] Length = 205 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|297494770|gb|ADI41111.1| ATP-dependent Clp protease protein [Escherichia coli] Length = 189 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855664|gb|AAU88706.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855666|gb|AAU88707.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855684|gb|AAU88716.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855700|gb|AAU88724.1| clp protease ATP-binding subunit [Shigella sonnei] gi|52855704|gb|AAU88726.1| clp protease ATP-binding subunit [Shigella sp. K-380] Length = 201 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855582|gb|AAU88665.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855598|gb|AAU88673.1| clp protease ATP-binding subunit [Shigella boydii] Length = 205 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52697076|gb|AAU86275.1| clp protease ATP-binding subunit [Escherichia albertii] Length = 199 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855174|gb|AAU88461.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855534|gb|AAU88641.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855656|gb|AAU88702.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 200 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|52855680|gb|AAU88714.1| clp protease ATP-binding subunit [Shigella boydii] Length = 210 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|57996842|emb|CAI45869.1| negative response regulator [Escherichia coli] Length = 200 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855518|gb|AAU88633.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855528|gb|AAU88638.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855540|gb|AAU88644.1| clp protease ATP-binding subunit [Escherichia coli] Length = 203 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 11 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70 Query: 110 AINIVRESRR 119 V++++R Sbjct: 71 CDYDVQKAQR 80 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 81 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 141 DTSKILFICGGAF 153 >gi|52855692|gb|AAU88720.1| clp protease ATP-binding subunit [Shigella boydii] Length = 204 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|52855632|gb|AAU88690.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 209 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|52855538|gb|AAU88643.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855602|gb|AAU88675.1| clp protease ATP-binding subunit [Shigella flexneri 2a] Length = 202 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|52855678|gb|AAU88713.1| clp protease ATP-binding subunit [Shigella boydii] Length = 210 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 16 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 75 Query: 110 AINIVRESRR 119 V++++R Sbjct: 76 CDYDVQKAQR 85 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 86 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 145 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 146 DTSKILFICGGAF 158 >gi|52855670|gb|AAU88709.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855676|gb|AAU88712.1| clp protease ATP-binding subunit [Shigella boydii] Length = 204 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 13 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72 Query: 110 AINIVRESRR 119 V++++R Sbjct: 73 CDYDVQKAQR 82 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 83 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 143 DTSKILFICGGAF 155 >gi|52855592|gb|AAU88670.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855600|gb|AAU88674.1| clp protease ATP-binding subunit [Shigella boydii] Length = 204 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|297495228|gb|ADI41340.1| ATP-dependent Clp protease protein [Escherichia coli] Length = 189 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855164|gb|AAU88456.1| clp protease ATP-binding subunit [Escherichia coli] Length = 211 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 17 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76 Query: 110 AINIVRESRR 119 V++++R Sbjct: 77 CDYDVQKAQR 86 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 87 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 147 DTSKILFICGGAF 159 >gi|52855578|gb|AAU88663.1| clp protease ATP-binding subunit [Escherichia coli] Length = 202 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855516|gb|AAU88632.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 204 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855140|gb|AAU88444.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855150|gb|AAU88449.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855556|gb|AAU88652.1| clp protease ATP-binding subunit [Escherichia coli] Length = 213 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%) Query: 33 ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF + Sbjct: 1 AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T TE GYVG +VE II+ L+ V++++R Sbjct: 55 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|297495104|gb|ADI41278.1| ATP-dependent Clp protease protein [Escherichia coli] Length = 189 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|52855576|gb|AAU88662.1| clp protease ATP-binding subunit [Escherichia coli] Length = 209 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|52855498|gb|AAU88623.1| clp protease ATP-binding subunit [Shigella boydii] Length = 215 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%) Query: 33 ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF + Sbjct: 1 AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T TE GYVG +VE II+ L+ V++++R Sbjct: 55 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|52855504|gb|AAU88626.1| clp protease ATP-binding subunit [Shigella boydii] Length = 216 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%) Query: 33 ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF + Sbjct: 1 AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T TE GYVG +VE II+ L+ V++++R Sbjct: 55 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|52697042|gb|AAU86258.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855142|gb|AAU88445.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855546|gb|AAU88647.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855548|gb|AAU88648.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855636|gb|AAU88692.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 214 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 13/94 (13%) Query: 33 ALRNRWRRQQLPADLRD-------ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 A+ N ++R LR+ EL NILL+GPTG GKT ++ LARL PF + Sbjct: 1 AVYNHYKR------LRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 54 Query: 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 T TE GYVG +VE II+ L+ V++++R Sbjct: 55 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|71988663|ref|NP_001021562.1| hypothetical protein K07A3.3 [Caenorhabditis elegans] gi|51988143|gb|AAU20843.1| Hypothetical protein K07A3.3b [Caenorhabditis elegans] Length = 518 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 49/162 (30%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 P+EIV L++Y++GQ++AK+ +A+A+ +RR Sbjct: 99 LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158 Query: 41 -------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLA 77 +Q+ DL +D ++ K N++L+G +G GKT ++++LA + Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 P + + T T+ GYVG +V+ +I+ L+ A+ + + +R Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQR 260 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 75/247 (30%) Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEG------------SSVSTK 287 GIVFLDEFDKI SGN VS +GVQ+ LL LVEG S V+ Sbjct: 261 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 319 Query: 288 YGSI---------NTDHIL----------FIASGAFH------------------VSRPA 310 +I N +HI+ F+++ + H VS+ Sbjct: 320 TSNILFIASGAFSNIEHIVARRMDKRSLGFLSATSPHKLGDQDTTEKLRDSDEEIVSKAR 379 Query: 311 D---------------LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT 355 + ++PE+ GRFPV V L+K+ +LT+ +LI Q K+ + Sbjct: 380 NEMIKQCDQGDLISFGMIPELVGRFPVIVPFHCLDKTHLMSVLTEPRGSLIAQTKKFFEN 439 Query: 356 EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVID 415 E + L F+ +I+A+A++AV + GAR L++++E+ + + + K V I Sbjct: 440 ENVELRFSPAAIEAIAEMAVKRKT-----GARALKSIVEKAVMNAKYEVPGSDVKCVEIT 494 Query: 416 AEYVRLH 422 + ++ H Sbjct: 495 DQNLKDH 501 >gi|52697070|gb|AAU86272.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697072|gb|AAU86273.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855588|gb|AAU88668.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 206 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52697068|gb|AAU86271.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855586|gb|AAU88667.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 208 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855552|gb|AAU88650.1| clp protease ATP-binding subunit [Escherichia coli] Length = 204 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 11 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70 Query: 110 AINIVRESRR 119 V++++R Sbjct: 71 CDYDVQKAQR 80 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 81 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 141 DTSKILFICGGAF 153 >gi|52855630|gb|AAU88689.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 207 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 13 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 72 Query: 110 AINIVRESRR 119 V++++R Sbjct: 73 CDYDVQKAQR 82 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 83 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 142 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 143 DTSKILFICGGAF 155 >gi|52697046|gb|AAU86260.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697048|gb|AAU86261.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697050|gb|AAU86262.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697052|gb|AAU86263.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855162|gb|AAU88455.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855500|gb|AAU88624.1| clp protease ATP-binding subunit [Shigella sonnei] gi|52855532|gb|AAU88640.1| clp protease ATP-binding subunit [Shigella dysenteriae] Length = 212 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52697074|gb|AAU86274.1| clp protease ATP-binding subunit [Shigella boydii] Length = 207 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855490|gb|AAU88619.1| clp protease ATP-binding subunit [Escherichia coli] Length = 215 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855160|gb|AAU88454.1| clp protease ATP-binding subunit [Escherichia coli] Length = 211 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855166|gb|AAU88457.1| clp protease ATP-binding subunit [Escherichia coli] Length = 216 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 17 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76 Query: 110 AINIVRESRR 119 V++++R Sbjct: 77 CDYDVQKAQR 86 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 87 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 147 DTSKILFICGGAF 159 >gi|52855590|gb|AAU88669.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 207 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 11 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 70 Query: 110 AINIVRESRR 119 V++++R Sbjct: 71 CDYDVQKAQR 80 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 81 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 140 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 141 DTSKILFICGGAF 153 >gi|303319225|ref|XP_003069612.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240109298|gb|EER27467.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|320040972|gb|EFW22905.1| ATP-dependent Clp protease [Coccidioides posadasii str. Silveira] Length = 611 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 56/160 (35%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 87 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146 Query: 43 ----------------LPADLRDELMPK----------------NILLVGPTGVGKTAIS 70 P + D+L P NILL+GP+GVGKT ++ Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + LAR+ PF + T FT+ GY+G + + + L+ A Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAA 246 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L+++ ILT+ ++L+ QY L GI L FT Sbjct: 440 PPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRNSLVNQYTTLFALSGIELRFT 499 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 500 TAALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 545 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 55/174 (31%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG++V Sbjct: 242 -LLAAANYDVAQAEHGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAK 300 Query: 285 ----STKYG------------------------------SINTDHILFIASGAF 304 + ++G ++ TD+ILFI SGAF Sbjct: 301 PEKNAPRHGGSPTNFPGTSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAF 354 >gi|52855642|gb|AAU88695.1| clp protease ATP-binding subunit [Shigella flexneri] Length = 207 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855562|gb|AAU88655.1| clp protease ATP-binding subunit [Escherichia coli] Length = 210 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855144|gb|AAU88446.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855146|gb|AAU88447.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855544|gb|AAU88646.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855550|gb|AAU88649.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855566|gb|AAU88657.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855580|gb|AAU88664.1| clp protease ATP-binding subunit [Escherichia coli] Length = 218 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|52855502|gb|AAU88625.1| clp protease ATP-binding subunit [Shigella sonnei] Length = 213 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|119182495|ref|XP_001242376.1| hypothetical protein CIMG_06272 [Coccidioides immitis RS] Length = 612 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 56/160 (35%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 87 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRRAEEHEAFLARQARREAVEG 146 Query: 43 ----------------LPADLRDELMPK----------------NILLVGPTGVGKTAIS 70 P + D+L P NILL+GP+GVGKT ++ Sbjct: 147 HPLESEFPGQQRTISLPPCEYSDDLSPPGTDSLVDTTPLMLEKSNILLLGPSGVGKTLMA 206 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + LAR+ PF + T FT+ GY+G + + + L+ A Sbjct: 207 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAA 246 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L+++ ILT+ ++L+ QY L GI L FT Sbjct: 441 PPDLQSYGFIPELVGRIPITTALSPLSQNLLLRILTEPRNSLVNQYTTLFALSGIELRFT 500 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 501 TAALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 546 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 55/174 (31%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG++V Sbjct: 242 -LLAAANYDVAQAEHGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAK 300 Query: 285 ----STKYG------------------------------SINTDHILFIASGAF 304 + ++G ++ TD+ILFI SGAF Sbjct: 301 PEKNAPRHGGSPTNFPGTSLGGSSFSSSTQGPSGKAEVYNVRTDNILFIFSGAF 354 >gi|52855608|gb|AAU88678.1| clp protease ATP-binding subunit [Shigella dysenteriae] gi|52855646|gb|AAU88697.1| clp protease ATP-binding subunit [Shigella flexneri 2a] Length = 207 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 10 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 69 Query: 110 AINIVRESRR 119 V++++R Sbjct: 70 CDYDVQKAQR 79 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 80 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 139 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 140 DTSKILFICGGAF 152 >gi|52855148|gb|AAU88448.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855152|gb|AAU88450.1| clp protease ATP-binding subunit [Escherichia coli] Length = 219 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|52697044|gb|AAU86259.1| clp protease ATP-binding subunit [Shigella boydii] Length = 217 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|52855158|gb|AAU88453.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855492|gb|AAU88620.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855558|gb|AAU88653.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855572|gb|AAU88660.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855574|gb|AAU88661.1| clp protease ATP-binding subunit [Escherichia coli] Length = 217 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ + ++ + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855168|gb|AAU88458.1| clp protease ATP-binding subunit [Escherichia coli] Length = 217 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 17 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 76 Query: 110 AINIVRESRR 119 V++++R Sbjct: 77 CDYDVQKAQR 86 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 87 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 146 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 147 DTSKILFICGGAF 159 >gi|261755784|ref|ZP_05999493.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3 str. 686] gi|261745537|gb|EEY33463.1| ATP-dependent hsl protease ATP-binding subunit [Brucella suis bv. 3 str. 686] Length = 57 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 383 DIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +IGARRLQTVME+VL++ISF+A D T +IDA YV+ IG TD+ FIL Sbjct: 3 NIGARRLQTVMEKVLDEISFTAPDKAGATFIIDAAYVKEKIGGLAKNTDLSRFIL 57 >gi|52697062|gb|AAU86268.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697064|gb|AAU86269.1| clp protease ATP-binding subunit [Shigella boydii] Length = 215 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 15 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 74 Query: 110 AINIVRESRR 119 V++++R Sbjct: 75 CDYDVQKAQR 84 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 85 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 144 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 145 DTSKILFICGGAF 157 >gi|60117397|gb|AAX14456.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Wolbachia endosymbiont of Drosophila mojavensis] Length = 176 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 12/126 (9%) Query: 303 AFHVSRPADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 A H +P DL+ PE GR P+ L L+ D +LT+ + LI QYK L+ Sbjct: 23 ALHDVQPEDLIKFGLIPEFVGRVPITAVLDELDHEDLIHVLTEPRNALIKQYKALLAFSK 82 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD--LQEKTVVID 415 + L+F++++I A+A A++ + GAR L+ ++E +L DI +++ + + T+VI Sbjct: 83 VNLEFSDEAISAIAKKAISYKT-----GARMLRAILESLLLDIMYTSGNGGFEGSTIVIT 137 Query: 416 AEYVRL 421 + V+L Sbjct: 138 KKMVQL 143 >gi|52855154|gb|AAU88451.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855156|gb|AAU88452.1| clp protease ATP-binding subunit [Escherichia coli] Length = 218 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 18 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 77 Query: 110 AINIVRESRR 119 V++++R Sbjct: 78 CDYDVQKAQR 87 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 88 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 147 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 148 DTSKILFICGGAF 160 >gi|52855658|gb|AAU88703.1| clp protease ATP-binding subunit [Shigella flexneri] gi|52855668|gb|AAU88708.1| clp protease ATP-binding subunit [Shigella boydii] gi|52855686|gb|AAU88717.1| clp protease ATP-binding subunit [Shigella boydii] Length = 213 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855508|gb|AAU88628.1| clp protease ATP-binding subunit [Shigella boydii] Length = 211 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|52855170|gb|AAU88459.1| clp protease ATP-binding subunit [Escherichia coli] Length = 214 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 14 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 73 Query: 110 AINIVRESRR 119 V++++R Sbjct: 74 CDYDVQKAQR 83 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 84 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 143 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 144 DTSKILFICGGAF 156 >gi|52855488|gb|AAU88618.1| clp protease ATP-binding subunit [Escherichia coli] gi|52855536|gb|AAU88642.1| clp protease ATP-binding subunit [Escherichia coli] Length = 220 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 19 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 78 Query: 110 AINIVRESRR 119 V++++R Sbjct: 79 CDYDVQKAQR 88 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 89 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 148 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 149 DTSKILFICGGAF 161 >gi|71988660|ref|NP_001021561.1| hypothetical protein K07A3.3 [Caenorhabditis elegans] gi|31746617|gb|AAF39912.2| Hypothetical protein K07A3.3a [Caenorhabditis elegans] Length = 356 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 49/162 (30%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 P+EIV L++Y++GQ++AK+ +A+A+ +RR Sbjct: 99 LHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKERKKM 158 Query: 41 -------------------QQLPADL---RDELMPK-NILLVGPTGVGKTAISRRLARLA 77 +Q+ DL +D ++ K N++L+G +G GKT ++++LA + Sbjct: 159 RKQNPEEEEYYPEYVQKSQRQILKDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVL 218 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 P + + T T+ GYVG +V+ +I+ L+ A+ + + +R Sbjct: 219 DVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQR 260 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 13/72 (18%) Query: 245 GIVFLDEFDKIVA-----RDSGNGIGVSREGVQRDLLPLVEGSSVSTK-------YGSIN 292 GIVFLDEFDKI SGN VS +GVQ+ LL LVEGS V + +I+ Sbjct: 261 GIVFLDEFDKIYTSSDPLHTSGNR-DVSGKGVQQALLKLVEGSLVKVRDPLAPNSKVTID 319 Query: 293 TDHILFIASGAF 304 T +ILFIASGAF Sbjct: 320 TSNILFIASGAF 331 >gi|52697078|gb|AAU86276.1| clp protease ATP-binding subunit [Shigella boydii] gi|52697080|gb|AAU86277.1| clp protease ATP-binding subunit [Shigella boydii] Length = 212 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 44/70 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL NILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 12 ELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 71 Query: 110 AINIVRESRR 119 V++++R Sbjct: 72 CDYDVQKAQR 81 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 82 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 141 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 142 DTSKILFICGGAF 154 >gi|255083629|ref|XP_002508389.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299] gi|226523666|gb|ACO69647.1| hypothetical protein MICPUN_61722 [Micromonas sp. RCC299] Length = 877 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 6/114 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFPV V L+SL + + +L + + QY+ LM+ G+ L+FT+ ++ +A Sbjct: 713 LIPEFVGRFPVTVPLRSLGEDELVRVLMGPRNAVGRQYQRLMRMHGVDLEFTDGALRVIA 772 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-VVIDAEYVRLHIG 424 A+ + GAR L+T++ER+L + F D + VV+D R +G Sbjct: 773 RAALRR-----ETGARGLRTLVERLLTEAMFEVPDAPDVVKVVVDESSARRGLG 821 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NILL GPTG GKT +++ LA P + + T T+ GYVG +VE ++ L+ A Sbjct: 437 NILLCGPTGSGKTLLAKTLAEFVDVPIVIADATTLTQAGYVGEDVESLLHKLLQAA 492 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DK+ + I VS EGVQ+ LL +VEG+ +V K G + Sbjct: 502 GIVYIDEIDKLTRKSENLSITRDVSGEGVQQALLKMVEGTVVNVPEKGGRKNPRGDFIQV 561 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 562 DTSDILFICGGAF 574 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40 +PR +V LD Y++GQ AK+ +A+A+ N ++R Sbjct: 260 TPRRMVQMLDAYVVGQTHAKKVLAVAVYNHYKR 292 >gi|332375668|gb|AEE62975.1| unknown [Dendroctonus ponderosae] Length = 582 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 106/254 (41%), Gaps = 89/254 (35%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 312 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 365 Query: 291 ----INTDHILFIASGAFH-----------------------------VSRPADL----- 312 ++T +ILF+ASGA++ V++ A L Sbjct: 366 ETIQVDTTNILFVASGAYNGLERLIQRRNNENYLGFGAPVTAGQGRRAVAQEATLHSSTQ 425 Query: 313 ------------LPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLI 346 L ++Q R FPV V SL++S ILT+ + LI Sbjct: 426 SAEEENLEKDQALRQVQARDLIDFGMIPEFVGRFPVLVPFHSLDQSMLVRILTEPNNALI 485 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD 406 QY+ L+ + L FT D+++A+A A++ + GAR L+ +ME +L + F Sbjct: 486 PQYQRLLAMDQCQLSFTSDALNAIASQAMDRKT-----GARGLRAIMETLLLEPMFEVPG 540 Query: 407 LQEKTVVIDAEYVR 420 V + E VR Sbjct: 541 AGISEVHVTDECVR 554 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 242 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIGKLLQD 301 Query: 110 A 110 A Sbjct: 302 A 302 >gi|72028078|ref|XP_797563.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) [Strongylocentrotus purpuratus] gi|115950156|ref|XP_001175999.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) [Strongylocentrotus purpuratus] Length = 615 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 9/111 (8%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFP+ V L SL++ + ILT+ + +I Q++ L K + L T+D++ A+A Sbjct: 484 MIPEFVGRFPIFVSLGSLDEEMLQRILTEPRNAIIPQFEALFKMDSCQLTITDDALKAVA 543 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDAEYVR 420 +A+ + GAR L+++ME +L + F SD++E V++DAE V+ Sbjct: 544 QLALERKT-----GARGLRSIMEIILLESMFEIPGSDIEE--VIVDAEVVQ 587 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 11/118 (9%) Query: 6 NFSPREI-----VSELDRYI---IGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNI 56 NF+PRE+ +S + GQQ A+ ++R + L A++ D +L NI Sbjct: 223 NFTPRELLQLAGISNQGNALGASSGQQGAQGPTETDHQHRGS-ELLYANVFDLKLDKSNI 281 Query: 57 LLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 L++GPTG GKT +++ +A PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 282 LMLGPTGSGKTLLAQTIATCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLADANFNV 339 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GI+FLDE DKI A RD G EGVQ+ LL L+EG+ V+ S Sbjct: 345 GIIFLDEVDKIGAVPGIHQLRDVGG------EGVQQGLLKLLEGTVVNVPERSSRKLRGE 398 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 399 SVPVDTTNILFVASGAFN 416 >gi|321258063|ref|XP_003193801.1| ATP-dependent Clp protease ATP-binding subunit [Cryptococcus gattii WM276] gi|317460271|gb|ADV22014.1| ATP-dependent Clp protease ATP-binding subunit, putative [Cryptococcus gattii WM276] Length = 611 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 38/56 (67%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+L++GPTG GKT ++R LARL PF+ + T +T+ GYVG +VE + L+ A Sbjct: 222 NVLMIGPTGTGKTLMARTLARLLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDELMP 53 SP+ + S L +Y++GQ+ AKR +++A+ N ++R LP+ EL P Sbjct: 8 SPKHLYSHLSKYVVGQERAKRILSVAVYNHYQRIAPLLPSVDEQELSP 55 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L+ D ILT+ + L+ QY +L G L FT+ ++ +A Sbjct: 482 LIPEFLGRLPILSTLHPLSIDDMVRILTEPNNALLKQYIKLFGNYGSELCFTDKAVREIA 541 >gi|302656403|ref|XP_003019955.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517] gi|291183732|gb|EFE39331.1| hypothetical protein TRV_06001 [Trichophyton verrucosum HKI 0517] Length = 603 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 50/162 (30%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43 +P+ + LD +++GQ AKR +++A+ N ++R Q+L Sbjct: 88 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147 Query: 44 ----------PADLRDELMPK----------------NILLVGPTGVGKTAISRRLARLA 77 P D+ +P NILL+GP+GVGKT +++ LAR+ Sbjct: 148 PVEADYTSFRPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMAKTLARVL 207 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 208 SVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294 Query: 288 --------------------YGS------------INTDHILFIASGAF 304 Y S I TD+ILFI SGAF Sbjct: 295 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 343 >gi|255950672|ref|XP_002566103.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593120|emb|CAP99496.1| Pc22g22080 [Penicillium chrysogenum Wisconsin 54-1255] Length = 579 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 52/164 (31%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40 +P+ + LD+Y++GQ AK+ +++A+ N ++R Sbjct: 84 TPKVLKQYLDQYVVGQDRAKKVLSVAVYNHYQRVQELVRREEEAAEALAKRQRREALETH 143 Query: 41 -----------QQLP----------ADLRD----ELMPKNILLVGPTGVGKTAISRRLAR 75 Q P AD D +L NILL+GP+GVGKT +++ LAR Sbjct: 144 HLDGVQKTTSVPQTPRSRPNTPLEQADFADTSPLQLEKSNILLLGPSGVGKTLMAKTLAR 203 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 204 VLSVPFSISDCTVFTQAGYIGEDAEVCVHRLLAAADYNVEQAER 247 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 27/157 (17%) Query: 276 LPLVEGSSVSTKYGSINTDHILFIASG-------------AFHVSRPADL-----LPEIQ 317 LP++ GS Y H+ F +S A + P+DL +PE+ Sbjct: 361 LPILPGSEEEALY----KKHLPFFSSASPAGSGAEPTYFNALDLLTPSDLQSYGFIPELI 416 Query: 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 GR PV L +L++ ILT+ ++L+ QY L GI L FT ++ +A A + Sbjct: 417 GRIPVTAALSALSQPLLMRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAGNAFAM 476 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 + GAR L+T ME +L D F A K V++ Sbjct: 477 GT-----GARALRTEMETILSDAMFEAPGSSVKFVLV 508 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 11/71 (15%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-----------STKYGSINT 293 GI+ LDE DKI A +G V EGVQ+ LL ++EG++V +TK ++ T Sbjct: 248 GIIVLDEVDKIAAAKVSHGKDVGGEGVQQALLKIIEGTTVQVQAKPEKNPRATKVYNVRT 307 Query: 294 DHILFIASGAF 304 D+ILF+ SGAF Sbjct: 308 DNILFVFSGAF 318 >gi|315636710|ref|ZP_07891940.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri JV22] gi|315479025|gb|EFU69728.1| ATP-dependent Clp protease ATP-binding subunit [Arcobacter butzleri JV22] Length = 147 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR + L + + D ILT+ ++ LI QY +L + + ++L+F +D++ LA Sbjct: 32 LIPELIGRLHMIATLNEITQDDMVHILTEPKNALIKQYVKLFELDNVVLEFEKDALKELA 91 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ V GAR L++++E ++ DI F + KTVVI E V Sbjct: 92 KLAI-----VRKTGARGLRSILEDIMLDIMFDLPKYKNKTVVITKEVV 134 >gi|50310995|ref|XP_455520.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644656|emb|CAG98228.1| KLLA0F09691p [Kluyveromyces lactis] Length = 505 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 50/150 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--------------------------- 40 SP+E+ + LD YI+GQ D K+ ++A+ N + R Sbjct: 32 SPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKLDST 91 Query: 41 ------------------QQLPADLRD-----ELMPKNILLVGPTGVGKTAISRRLARLA 77 +QL +L + EL N+++VGP+G GKT ++ LAR+ Sbjct: 92 SPIEFTSTEAEQGMRNLQRQLSLELDNDDEDLELSKSNLMVVGPSGSGKTLLATTLARML 151 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 P + T+ T+ GY+G +VE I L+ Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLL 181 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 84/255 (32%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSSVSTKYGS------------- 290 GI+ LDE DK+ + G VS EGVQ+ LL ++EG V Sbjct: 194 GIIVLDEVDKLAKPAASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQT 253 Query: 291 ---------INTDHILFIASGAF-----HVSR---------------------------- 308 ++T +ILF+ GAF H+ + Sbjct: 254 AAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTI 313 Query: 309 ------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNL 345 P+DL +PE+ GR P+ L+ L ++D IL + + L Sbjct: 314 EHIDIGDGKTISALNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEPRNAL 373 Query: 346 ILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 + QY+ + K G+ L TE ++ +A A+ + GAR L+ +MER+L ++++ Sbjct: 374 LHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGT-----GARGLRGIMERLLLNVNYECP 428 Query: 406 DLQEKTVVIDAEYVR 420 D V+++ E V+ Sbjct: 429 DSGISYVLVNEETVK 443 >gi|322790222|gb|EFZ15221.1| hypothetical protein SINV_05303 [Solenopsis invicta] Length = 404 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 39/149 (26%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRR----QQLPADL-----------------R 48 + I LD+ ++GQ AKR +++A+ N ++R Q + L R Sbjct: 15 KAIYKYLDKCVVGQLHAKRVLSVAVYNHYKRIYNNQPVAKSLEQTNLVNTQEINHLFTDR 74 Query: 49 D--------ELMPKN----------ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 D L+PKN I+++GPTG GKT + +A PF+ + + T Sbjct: 75 DLKSSSSNGNLVPKNDKKHQLAKSNIMMIGPTGSGKTLLIETIAEFLNVPFVICDCSALT 134 Query: 91 EIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + GY G + E II++L+ A +V ++ + Sbjct: 135 QSGYYGDDPENIIKNLLQKADGVVEQAEK 163 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +LN+ IL + ++ +I QY+ L + + L F ++++ A+A Sbjct: 291 MIPEFIGRFPVLVPFHTLNEDVLARILIEPKNAIIPQYQMLFSKDKVKLTFDKNALTAIA 350 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+T++E +L + F Sbjct: 351 SLALEKGT-----GARGLRTIIESLLLEPMF 376 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG--------SINTDHI 296 GIVFLDE DKI G V+ EGVQ++LL ++EG+ + K ++T +I Sbjct: 164 GIVFLDEVDKIKTM-INKGRDVAGEGVQQELLKMLEGTIIYVKNNRLQDKNEIPVDTTNI 222 Query: 297 LFIASGAF 304 LF+ASGA+ Sbjct: 223 LFVASGAY 230 >gi|70990236|ref|XP_749967.1| ATP-dependent Clp protease [Aspergillus fumigatus Af293] gi|66847599|gb|EAL87929.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus Af293] gi|159130447|gb|EDP55560.1| ATP-dependent Clp protease, putative [Aspergillus fumigatus A1163] Length = 638 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 53/165 (32%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 110 TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEEKAELLARQARREALEHH 169 Query: 43 -----LPADLRDELMP-----------------------KNILLVGPTGVGKTAISRRLA 74 P R +P NILL+GP+GVGKT +++ LA Sbjct: 170 PAEDEFPGQQRTVHLPTSPKSTTSNEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKTLA 229 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 R+ PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 230 RVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 274 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP +S ++ G + F A + P DL +PE+ GR Sbjct: 424 GSEEEALYKKHLPFFTAASPTSPDG----EPPYF---NALDLLNPTDLQNYGFIPELIGR 476 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L +L++ ILT+ ++L+ QY L GI L FT ++ +A A + + Sbjct: 477 IPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAANAFAMGT 536 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F K V+I Sbjct: 537 -----GARALRTEMENILSDAMFETPGSSVKFVLI 566 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 63/179 (35%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233 SN + G + VG +++ ++V+ + S+ C P I D V Sbjct: 209 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 258 Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-- 284 HR + NY GI+ LDE DKI A +G VS EGVQ+ LL ++EG++V Sbjct: 259 HR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEGTTVQV 316 Query: 285 --------------STKYGSIN-------------------------TDHILFIASGAF 304 + Y S N TD+ILFI SGAF Sbjct: 317 QAKQERNAHRTSGTPSSYPSNNPFGNSPFSQSPTGNAPQKGEIYNVRTDNILFIFSGAF 375 >gi|294855243|gb|ADF44559.1| ATPase/ClpX-ClpP ATP-dependent serine protease specificity subunit [Escherichia fergusonii] Length = 175 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 43/70 (61%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL ILL+GPTG GKT ++ LARL PF + T TE GYVG +VE II+ L+ Sbjct: 1 ELGKSTILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQK 60 Query: 110 AINIVRESRR 119 V++++R Sbjct: 61 CDYDVQKAQR 70 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V + G + Sbjct: 71 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 130 Query: 292 NTDHILFIASGAF 304 +T ILFI GAF Sbjct: 131 DTSKILFICGGAF 143 >gi|113205069|ref|NP_001037854.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 2 [Mus musculus] gi|38174645|gb|AAH61153.1| Caseinolytic peptidase X (E.coli) [Mus musculus] Length = 620 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 60/162 (37%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPK------- 54 I + LD+Y++GQ AK+ +++A+ N ++R QQ A+ + L P+ Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 232 Query: 55 ------------------------------------------NILLVGPTGVGKTAISRR 72 NILL+GPTG GKT +++ Sbjct: 233 ISPHGNALGASMQQQVNQQMPQEKRGGEVLDSSQDDIKLEKSNILLLGPTGSGKTLLAQT 292 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 LA+ PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 293 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 334 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 479 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 538 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 539 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 581 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 340 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 396 Query: 291 INTDHILFIASGAFH 305 ++T ++LF+ASGAF+ Sbjct: 397 VDTTNVLFVASGAFN 411 >gi|291402836|ref|XP_002718045.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1 [Oryctolagus cuniculus] Length = 619 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 60/162 (37%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR----------QQLPADLRDELMPK------- 54 I + LD+Y++GQ AK+ +++A+ N ++R QQ A+ + L P+ Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEAEKQTSLTPRELLQIAG 231 Query: 55 ------------------------------------------NILLVGPTGVGKTAISRR 72 NILL+GPTG GKT +++ Sbjct: 232 ISPHGNALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKSNILLLGPTGSGKTLLAQT 291 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 LA+ PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 292 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 333 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 14/127 (11%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 478 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 537 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE---------YVRLH 422 +A+ + GAR L+++ME++L + F + V +D E Y+R Sbjct: 538 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRAP 592 Query: 423 IGDFPSE 429 D P E Sbjct: 593 AKDSPEE 599 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 339 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 395 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 396 VDTTNILFVASGAFN 410 >gi|156550057|ref|XP_001605256.1| PREDICTED: similar to ATP-dependent clp protease atp-binding subunit clpx [Nasonia vitripennis] Length = 592 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 89/236 (37%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 322 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 375 Query: 291 ----INTDHILFIASGAFH-----VSR------------PAD------------------ 311 ++T +ILF+ASGA++ VSR PA Sbjct: 376 DTLQVDTTNILFVASGAYNGLDRLVSRRKNEKYLGFGATPASESPGRRAASLADVANMSP 435 Query: 312 -----------LLPEIQGR--------------FPVRVHLKSLNKSDFRLILTDTESNLI 346 LL +++ R FPV V +LN+ ILT+ ++ ++ Sbjct: 436 STEDDNKEKDVLLRQVEARDLIDFGMIPEFVGRFPVLVPFHTLNREMLVRILTEPKNAMV 495 Query: 347 LQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 QY+ L + + L FT +++DA+A +A+ + GAR L+ +ME +L + F Sbjct: 496 PQYQMLFSMDKVELTFTPEALDAIASMAMERKT-----GARGLRAIMESLLLEPMF 546 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A +V Sbjct: 257 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 316 >gi|52219008|ref|NP_001004581.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Danio rerio] gi|51859089|gb|AAH81643.1| Zgc:92303 [Danio rerio] Length = 610 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 65/190 (34%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR------------------------------- 40 I + LD+Y++GQ AK+ +++A+ N ++R Sbjct: 161 IFAYLDKYVVGQDHAKKVLSVAVYNHYKRIYNNMPAGSRQQQVEVEKQASLTPRELLQIA 220 Query: 41 ------------------QQLPADLRD-----------ELMPKNILLVGPTGVGKTAISR 71 QQ P + R +L NI+L+GPTG GKT +++ Sbjct: 221 GISPHGNALGASMQQQLNQQTPPEKRGGEVLDSTHTDIKLEKSNIVLLGPTGSGKTLLAQ 280 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQA 126 LA+ PF + T T+ GYVG ++E +I L+ A ++ ++++ DEV + Sbjct: 281 TLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVIEKAQQGIVFLDEVDKIG 340 Query: 127 SINAEERILD 136 S+ ++ D Sbjct: 341 SVPGIHQLRD 350 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ T D++ A+A Sbjct: 469 MIPEFVGRLPVVVPLHSLDEETLVRILTEPRNAVVPQYQALFSMDKCELNMTPDALRAIA 528 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+++ME++L D F Sbjct: 529 RLALERKT-----GARGLRSIMEKLLLDPMF 554 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 329 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNTRKLRGETVQ 385 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 386 VDTTNILFVASGAFN 400 >gi|6478309|gb|AAF13813.1|AF130815_5 heat shock protein HslU [Buchnera aphidicola] Length = 72 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425 I +A++A N ++ +IGARRL TV+E ++EDISF+AS+ + + VV ID EYV H+ D Sbjct: 1 IRYIAEIAWKANESIENIGARRLYTVLEHLMEDISFNASNNKTEIVVNIDKEYVSKHLDD 60 Query: 426 FPSETDMYHFIL 437 D+ FIL Sbjct: 61 LILNNDLSRFIL 72 >gi|119497351|ref|XP_001265434.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL 181] gi|119413596|gb|EAW23537.1| ATP-dependent Clp protease, putative [Neosartorya fischeri NRRL 181] Length = 591 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 55/167 (32%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 61 TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRREEENAELLARRARRQALEHH 120 Query: 43 -----LPADLRDELMP-------------------------KNILLVGPTGVGKTAISRR 72 P R +P NILL+GP+GVGKT +++ Sbjct: 121 PAEDEFPGQQRTVHLPTSPKSTTSNPDEALLSDSSPLQLEKSNILLLGPSGVGKTLMAKT 180 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 LAR+ PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 181 LARVLSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 227 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP +S ++ G + F A + P DL +PE+ GR Sbjct: 377 GSEEEALYKKHLPFFTAASPTSPDG----EPPYF---NALDLLNPTDLQNYGFIPELIGR 429 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L +L++ ILT+ ++L+ QY L GI L FT ++ +A A + + Sbjct: 430 IPVTAALSALSQPLLVRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKVAANAFAMGT 489 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F K V+I Sbjct: 490 -----GARALRTEMENILSDAMFETPGSSVKFVLI 519 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 63/179 (35%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233 SN + G + VG +++ ++V+ + S+ C P I D V Sbjct: 162 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 211 Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV-- 284 HR + NY GI+ LDE DK+ A +G VS EGVQ+ LL ++EG++V Sbjct: 212 HR--LLAAANYDVEQAERGIIVLDEVDKLAAAKVNHGKDVSGEGVQQALLKIIEGTTVQV 269 Query: 285 --------------STKYGSIN-------------------------TDHILFIASGAF 304 + Y S N TD+ILFI SGAF Sbjct: 270 QAKQERNAHRTSGTPSSYPSNNPLGNPPFSQSPTGNAPQKGEIYNVRTDNILFIFSGAF 328 >gi|167042795|gb|ABZ07513.1| hypothetical protein ALOHA_HF4000ANIW137I15ctg1g1 [uncultured marine microorganism HF4000_ANIW137I15] Length = 82 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 46 DLRD-ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 DL D E+ N+LL+GPTG GKT +++ +AR+ PF V+ T E GYVG +VE II Sbjct: 2 DLNDVEIQKSNVLLIGPTGSGKTLLAQTMARILDVPFAIVDATTLNEAGYVGEDVENIIL 61 Query: 105 DLVDVAINIVRESRR 119 L+ A V+ + R Sbjct: 62 KLLQNADYDVQRAER 76 >gi|58265886|ref|XP_570099.1| chaperone [Cryptococcus neoformans var. neoformans JEC21] gi|134110598|ref|XP_776126.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258794|gb|EAL21479.1| hypothetical protein CNBD1740 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226332|gb|AAW42792.1| chaperone, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 629 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+L++GPTG GKT ++R LA++ PF+ + T +T+ GYVG +VE + L+ A Sbjct: 222 NVLMIGPTGTGKTLMARTLAQMLNVPFVTCDATTYTQAGYVGEDVENCVLRLLQAA 277 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ L L+ D IL + + L+ QY +L + G L FT+ ++ +A Sbjct: 500 LIPEFLGRLPILSTLHPLSIDDMVRILAEPNNALLKQYIKLFENYGSELCFTDKAVREIA 559 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 ++ AR L+ V+E VL D F + +I VR Sbjct: 560 REGLDRGGG-----ARGLRGVLEEVLLDAMFEVPGSSVRYCLITEAVVR 603 >gi|119222225|gb|ABL62310.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222227|gb|ABL62311.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222229|gb|ABL62312.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222231|gb|ABL62313.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222233|gb|ABL62314.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222235|gb|ABL62315.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222237|gb|ABL62316.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222239|gb|ABL62317.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222241|gb|ABL62318.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 199 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 115 RESRR 119 ++R Sbjct: 62 ERAQR 66 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 67 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 127 DTTNILFICGGAF 139 >gi|326485123|gb|EGE09133.1| ATP-dependent Clp protease [Trichophyton equinum CBS 127.97] Length = 604 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD +++GQ AKR +++A+ N ++R Q Sbjct: 81 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140 Query: 43 -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70 P R D+ +P NILL+GP+GVGKT ++ Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294 Query: 290 ----------------------------------SINTDHILFIASGAF 304 +I TD+ILFI SGAF Sbjct: 295 PERNASRPSAGGSGSSSGTSYNPTSGPSGKAEVYNIRTDNILFIFSGAF 343 >gi|302505569|ref|XP_003014491.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371] gi|291178312|gb|EFE34102.1| hypothetical protein ARB_07053 [Arthroderma benhamiae CBS 112371] Length = 610 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD +++GQ AKR +++A+ N ++R Q Sbjct: 88 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 147 Query: 43 -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70 P R D+ +P NILL+GP+GVGKT ++ Sbjct: 148 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 207 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 208 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 256 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 433 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 492 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 493 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 538 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 191 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 242 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 243 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 301 Query: 288 --------------------YGS------------INTDHILFIASGAF 304 Y S I TD+ILFI SGAF Sbjct: 302 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 350 >gi|327300811|ref|XP_003235098.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892] gi|326462450|gb|EGD87903.1| ATP-dependent Clp protease [Trichophyton rubrum CBS 118892] Length = 594 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 57/169 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------- 42 +P+ + LD +++GQ AKR +++A+ N ++R Q Sbjct: 72 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 131 Query: 43 -----LPADLR-----------DELMPK----------------NILLVGPTGVGKTAIS 70 P R D+ +P NILL+GP+GVGKT ++ Sbjct: 132 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 191 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 192 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 240 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 417 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 476 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 477 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 522 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 175 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 226 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTK-- 287 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 227 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 285 Query: 288 --------------------YGS------------INTDHILFIASGAF 304 Y S I TD+ILFI SGAF Sbjct: 286 PERNASRPSPGGSGSSGGTSYNSTSGPSGKAEVYNIRTDNILFIFSGAF 334 >gi|119222397|gb|ABL62396.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222399|gb|ABL62397.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222401|gb|ABL62398.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222403|gb|ABL62399.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222405|gb|ABL62400.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222407|gb|ABL62401.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222421|gb|ABL62408.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222423|gb|ABL62409.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus NewJersey2] gi|119222425|gb|ABL62410.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222427|gb|ABL62411.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222429|gb|ABL62412.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222431|gb|ABL62413.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222433|gb|ABL62414.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222435|gb|ABL62415.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222437|gb|ABL62416.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222439|gb|ABL62417.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 197 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 115 RESRR 119 ++R Sbjct: 62 ERAQR 66 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 67 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 127 DTTNILFICGGAF 139 >gi|119222469|gb|ABL62432.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222471|gb|ABL62433.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222473|gb|ABL62434.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222475|gb|ABL62435.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222477|gb|ABL62436.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222479|gb|ABL62437.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222483|gb|ABL62439.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222485|gb|ABL62440.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222487|gb|ABL62441.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 197 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + Sbjct: 1 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60 Query: 115 RESRR 119 ++R Sbjct: 61 ERAQR 65 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 66 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 125 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 126 DTTNILFICGGAF 138 >gi|119222243|gb|ABL62319.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222245|gb|ABL62320.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222247|gb|ABL62321.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222249|gb|ABL62322.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222251|gb|ABL62323.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222253|gb|ABL62324.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 198 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + Sbjct: 1 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 60 Query: 115 RESRR 119 ++R Sbjct: 61 ERAQR 65 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 66 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 125 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 126 DTTNILFICGGAF 138 >gi|119222481|gb|ABL62438.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 198 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + Sbjct: 2 NILLLGPTGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDI 61 Query: 115 RESRR 119 ++R Sbjct: 62 ERAQR 66 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 67 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 126 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 127 DTTNILFICGGAF 139 >gi|255719754|ref|XP_002556157.1| KLTH0H06380p [Lachancea thermotolerans] gi|238942123|emb|CAR30295.1| KLTH0H06380p [Lachancea thermotolerans] Length = 508 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 51/162 (31%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRW-----RRQQLPADLRDELMPK-------- 54 SP+E+ LD Y++GQ K+ +++A+ N + +++++ A L+ EL+ K Sbjct: 32 SPKELRKFLDNYVVGQTTGKKVLSVAVYNHYLRVNDKQKRIDAKLQRELLEKQQQEDDKD 91 Query: 55 -------------------------------------NILLVGPTGVGKTAISRRLARLA 77 N+L+VGP+G GKT ++ LAR+ Sbjct: 92 EPIYTGSNEAKVGFQNLQTQLARGMDPKDDDLELSKSNVLVVGPSGSGKTLLASTLARVL 151 Query: 78 GAPFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINIVRESR 118 P + T+ T+ GY+G +VE I R L++ ++ + R Sbjct: 152 DVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAER 193 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 87/258 (33%) Query: 245 GIVFLDEFDKIVARDSGNGIG-VSREGVQRDLLPLVEGSS-------------------- 283 GI+ LDE DK+ + G VS EGVQ+ LL ++EG S Sbjct: 194 GIIVLDELDKLAKPAASIGTKDVSGEGVQQALLKILEGHSIEVTVKRPINKKKDGQNNNQ 253 Query: 284 VSTKYGS---INTDHILFIASGAF-----HVSR--------------------------- 308 VS K ++T +ILF+ GAF HV + Sbjct: 254 VSAKKDETFVVDTSNILFMLMGAFVGLDKHVVKRINRLKAISNGETIEDKSEDSKRLRFS 313 Query: 309 ---------------------PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTE 342 P DL +PE+ GR P+ L+ L ++D IL + + Sbjct: 314 NTIEKVELSNGKKVSALNLATPTDLVAYGLIPELIGRVPIITALEPLERTDLYHILREPK 373 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 + L+ QY+ + K G+ L TE ++ +A A++ + GAR L+ +MER+L ++++ Sbjct: 374 NALLNQYEYIFKQFGVKLCVTEKALMKVAHFALDEGT-----GARGLRGIMERLLLNVNY 428 Query: 403 SASDLQEKTVVIDAEYVR 420 V+++ + V+ Sbjct: 429 ECPGSGISYVLVNEDTVK 446 >gi|121703305|ref|XP_001269917.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1] gi|119398060|gb|EAW08491.1| ATP-dependent Clp protease, putative [Aspergillus clavatus NRRL 1] Length = 613 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 51/163 (31%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43 +P+ + LD++++GQ AK+ +++A+ N ++R Q+L Sbjct: 86 TPKTLKQYLDQFVVGQDRAKKILSVAVFNHYQRVQELQRRDEENAELLARRARREAIEHH 145 Query: 44 PAD-----LRDELMPK----------------------NILLVGPTGVGKTAISRRLARL 76 PA+ PK NILL+GP+GVGKT +++ LAR+ Sbjct: 146 PAEGQQRTAHPPPHPKPIASIPDDSALGASSALHLEKSNILLLGPSGVGKTLMAKTLARV 205 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 PF + T FT+ GY+G + E + L+ A V ++ R Sbjct: 206 LSVPFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAER 248 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 17/155 (10%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP SS + S +++ F A + P DL +PE+ GR Sbjct: 399 GSEEEALYKKYLPFFTASSPT----SPDSEPTYF---NALDLLNPTDLQSYGFIPELVGR 451 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L +L++S ILT+ ++L+ QY L GI L FT ++ +A A + + Sbjct: 452 IPVTAALSTLSQSLLVRILTEPRNSLLAQYITLFSLSGIELRFTSSALHRVAANAFTMGT 511 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F K V++ Sbjct: 512 -----GARALRTEMETILSDAMFETPGSSVKFVLV 541 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 69/179 (38%), Gaps = 63/179 (35%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD---TV 233 SN + G + VG +++ ++V+ + S+ C P I D V Sbjct: 183 SNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAG----YIGEDAEVCV 232 Query: 234 HRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST 286 HR + NY GI+ LDE DKI A +G V EGVQ+ LL ++EG++V Sbjct: 233 HR--LLAAANYDVEQAERGIIVLDEVDKIAAAKVSHGKDVGGEGVQQALLKIIEGTTVQV 290 Query: 287 K----------------YGSIN-------------------------TDHILFIASGAF 304 + Y S N TD+ILFI SGAF Sbjct: 291 QAKQEKGAPRTSGAPNSYPSNNPLGNASFSQSNTGNISQKGEVYNVRTDNILFICSGAF 349 >gi|46205724|ref|ZP_00048164.2| COG1219: ATP-dependent protease Clp, ATPase subunit [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 56/205 (27%) Query: 266 VSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAF---------- 304 +S EGVQ+ LL ++EG+ S ++ ++T +ILFI GAF Sbjct: 1 MSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQR 60 Query: 305 ----------HVSRPAD-------------------LLPEIQGRFPVRVHLKSLNKSDFR 335 V P D L+PE GR PV L+ L++ + Sbjct: 61 GKGTSIGFGASVQAPDDRRTGEIFRSVEPEDLLKFGLIPEFVGRLPVLATLEDLDEEALK 120 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 IL + ++ L+ QY+ L + E + L F ++++ +A A+ + GAR L++++E Sbjct: 121 KILQEPKNALVKQYQRLFEMENVELTFQDEALSLVARKAIERKT-----GARGLRSILET 175 Query: 396 VLEDISFSASDLQE-KTVVIDAEYV 419 +L D + L + VVI E V Sbjct: 176 ILLDTMYDLPGLDSVEQVVIGPEVV 200 >gi|325662428|ref|ZP_08151034.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471262|gb|EGC74486.1| hypothetical protein HMPREF0490_01773 [Lachnospiraceae bacterium 4_1_37FAA] Length = 155 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR PV V L+ L++ ILT+ +S ++ QY++L++ +G+ L F ED++ +A Sbjct: 26 LIPELVGRVPVTVTLEQLDEDALIRILTEPKSAIVKQYQKLLELDGVDLQFDEDALKEIA 85 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVIDAEYVR 420 ++++ + GAR L+ ++E V+ D F SD + KT I V+ Sbjct: 86 KISLSRKT-----GARGLRAILENVMMDTMFKVPSDDKIKTCRITENVVK 130 >gi|315453009|ref|YP_004073279.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter felis ATCC 49179] gi|315132061|emb|CBY82689.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Helicobacter felis ATCC 49179] Length = 896 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +SP+ I + LD+++IGQ+ AK+ +++ + ++R + + L N + +GP+G G Sbjct: 587 KYSPKAIKAYLDQFVIGQEQAKKQMSLVFSDHYKRIRGQSSLEK----ANAICIGPSGSG 642 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 KT + + P+ FT GY+G Q+ L A ++++++ Sbjct: 643 KTFLIEMATKYLDLPYCIANAASFTPTGYIGNETNQMFATLYSSADKDIQKAQK 696 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 43/204 (21%) Query: 245 GIVFLDEFDKIVARDSGNGIGVS---REGVQRDLLPLVEGSSVSTKYG--------SINT 293 G++ LDE DK+ G G R+GVQ +LL ++E VS YG ++ T Sbjct: 697 GVLVLDEIDKL-----GQGSWHDKEWRQGVQNELLKVIEKGIVSFDYGGRASGETITLQT 751 Query: 294 DHILFIASGAFHV----SRPADLLPEIQG--------------RFPVRVHLKSLNKSDFR 335 DH+LFI G F + ++ LP+ RF VRV ++++ Sbjct: 752 DHMLFIVLGHFEKLWKDNSSSEKLPQFSNEDLIECGMKREFLRRFSVRVVFEAVDIE--- 808 Query: 336 LILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER 395 +LT+ + ++E + EG +L+F++++ L N+ +G L + Sbjct: 809 -MLTELLDRRLKPFQEEFRAEGSVLEFSQEAKHLLVK-----NALKEGVGMSGLDQKLHE 862 Query: 396 VLEDISFSASDLQEKTVVIDAEYV 419 VL + F + +ID +++ Sbjct: 863 VLMPLRFDLENYYGLRCLIDFDHL 886 >gi|126277064|ref|XP_001367093.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 2 [Monodelphis domestica] Length = 617 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 60/162 (37%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE--------LMPKNI----- 56 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + L P+ + Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELLQIAG 229 Query: 57 --------------------------------------------LLVGPTGVGKTAISRR 72 LL+GPTG GKT +++ Sbjct: 230 ISPHGNALGASMQQQVNQQIPQEKRGGEVLDSAHDDIKLEKSNILLLGPTGSGKTLLAQT 289 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 LA+ PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 290 LAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 331 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 476 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 535 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A++ + GAR L+++ME++L + F + V +D E V Sbjct: 536 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 578 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 337 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 393 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 394 VDTTNILFVASGAFN 408 >gi|326468658|gb|EGD92667.1| ATP-dependent Clp protease [Trichophyton tonsurans CBS 112818] Length = 604 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 57/169 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43 +P+ + LD +++GQ AKR +++A+ N ++R Q+L Sbjct: 81 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEELLAQRARRESMESH 140 Query: 44 -----------------PADLRDELMPK----------------NILLVGPTGVGKTAIS 70 P D+ +P NILL+GP+GVGKT ++ Sbjct: 141 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLIDSSINMLEKSNILLLGPSGVGKTLMA 200 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 201 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 249 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 426 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 485 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 486 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 531 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 184 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 235 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 236 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 294 Query: 290 ----------------------------------SINTDHILFIASGAF 304 +I TD+ILFI SGAF Sbjct: 295 PERNASRPSAGGSGSSSGTSYNPTSGPSGKAEVYNIRTDNILFIFSGAF 343 >gi|315048507|ref|XP_003173628.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma gypseum CBS 118893] gi|311341595|gb|EFR00798.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Arthroderma gypseum CBS 118893] Length = 655 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 57/169 (33%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-QQL----------------------- 43 +P+ + LD +++GQ AKR +++A+ N ++R Q+L Sbjct: 130 TPKVLKQHLDNFVVGQDRAKRVLSVAVYNHYQRVQELQRRLEEHEEHLAQRARRESMESH 189 Query: 44 -----------------PADLRDELMPK----------------NILLVGPTGVGKTAIS 70 P D+ +P NILL+GP+GVGKT ++ Sbjct: 190 PVEDEFPGQQRTIHLSAPRRYYDDNLPSEQDPLVDSSINMLEKSNILLLGPSGVGKTLMA 249 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 250 KTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQTER 298 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 475 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 534 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 535 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 580 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 233 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 284 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG 289 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 285 -LLAAANYDVEQTERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 343 Query: 290 ----------------------------------SINTDHILFIASGAF 304 +I TD+ILFI SGAF Sbjct: 344 PERNASRPSSGSNSSPGGSSYNSTSSPSGKAEVYNIRTDNILFIFSGAF 392 >gi|239613498|gb|EEQ90485.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ER-3] Length = 624 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 54/167 (32%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 +P+ + LD++++GQ AK+ +++A+ N ++R Sbjct: 89 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 148 Query: 41 ---------QQ------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72 QQ LP D + K NILL+GP+GVGKT +++ Sbjct: 149 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 208 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 209 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 255 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L ILT+ ++L+ QY L GI L FT Sbjct: 445 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 504 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A+ A+++ + GAR L+T ME +L D F A K V++ Sbjct: 505 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 550 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 190 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 241 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 242 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 300 Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304 GS+N TD+ILFI SGAF Sbjct: 301 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 357 >gi|225678960|gb|EEH17244.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paracoccidioides brasiliensis Pb03] Length = 518 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G + E + + LP + + + GS + + F + P DL +PE+ GR Sbjct: 302 GSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF---NPLDLLTPPDLQTYGFIPELVGR 358 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 P+ L L ILT+ ++L+ QY L GI L FT ++ +A A+++ + Sbjct: 359 IPITTALSQLTHRLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 418 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V++ Sbjct: 419 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 448 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 43/148 (29%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRR---------------------------------- 40 LD++++GQ AK+ +++A+ N ++R Sbjct: 5 HLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARPEFPGQQRTIHTHA 64 Query: 41 --------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 + LP D + K NILL+GP+GVGKT +++ LAR+ PF + T T+ Sbjct: 65 ANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVLSVPFSMSDCTPLTQ 124 Query: 92 IGYVGRNVEQIIRDLVDVAINIVRESRR 119 GY+G + + + L+ A V ++ R Sbjct: 125 AGYIGEDADVCVHRLLAAANYDVAQAER 152 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%) Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 + + ++ + + + SN + G + VG +++ ++V+ + S+ C P Sbjct: 73 EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 126 Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 D+ VHR + NY GI+ LDE DKI +G VS EGVQ+ L Sbjct: 127 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 183 Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293 L ++EG++V + GS+N T Sbjct: 184 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSSSFGGSSFSSPAPPGSSGKAEVYNVRT 243 Query: 294 DHILFIASGAF 304 D+ILFI SGAF Sbjct: 244 DNILFIFSGAF 254 >gi|327357376|gb|EGE86233.1| ATP-dependent Clp protease [Ajellomyces dermatitidis ATCC 18188] Length = 629 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 54/167 (32%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 +P+ + LD++++GQ AK+ +++A+ N ++R Sbjct: 94 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVEG 153 Query: 41 ---------QQ------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72 QQ LP D + K NILL+GP+GVGKT +++ Sbjct: 154 HPVETEFPGQQRTIHTQRTTNDDNARSGPLPVDSSPLTLEKSNILLLGPSGVGKTLMAKT 213 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 LAR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 214 LARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVAQAER 260 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L ILT+ ++L+ QY L GI L FT Sbjct: 450 PPDLQTYGFIPELVGRIPITTALSQLTHPLLLRILTEPRNSLLAQYTTLFSLSGIELRFT 509 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A+ A+++ + GAR L+T ME +L D F A K V++ Sbjct: 510 TPALHKIANNAMSMAT-----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 555 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 58/177 (32%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 195 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 246 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY- 288 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ + Sbjct: 247 -LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 305 Query: 289 ---------GSIN--------------------------------TDHILFIASGAF 304 GS+N TD+ILFI SGAF Sbjct: 306 PERSAPRSGGSLNSNPGSGSGNFGGSSFNSTPPGSSGKAEVYNVRTDNILFIFSGAF 362 >gi|226287963|gb|EEH43476.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paracoccidioides brasiliensis Pb18] Length = 622 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G + E + + LP + + + GS + + F + P DL +PE+ GR Sbjct: 406 GSAEEALYKKHLPFFTPAPMPSTSGSADEEPTYF---NPLDLLTPPDLQTYGFIPELVGR 462 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 P+ L L ILT+ ++L+ QY L GI L FT ++ +A A+++ + Sbjct: 463 IPITTALSQLTHRLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 522 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V++ Sbjct: 523 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLV 552 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 53/166 (31%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR-------------------------- 40 +P+ + LD++++GQ AK+ +++A+ N ++R Sbjct: 91 LTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRESVES 150 Query: 41 --------------------------QQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 + LP D + K NILL+GP+GVGKT +++ L Sbjct: 151 HPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTL 210 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 AR+ PF + T T+ GY+G + + + L+ A V ++ R Sbjct: 211 ARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAER 256 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%) Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 + + ++ + + + SN + G + VG +++ ++V+ + S+ C P Sbjct: 177 EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 230 Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 D+ VHR + NY GI+ LDE DKI +G VS EGVQ+ L Sbjct: 231 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 287 Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293 L ++EG++V + GS+N T Sbjct: 288 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSSSFGGSSFSSPAPPGSSGKAEVYNVRT 347 Query: 294 DHILFIASGAF 304 D+ILFI SGAF Sbjct: 348 DNILFIFSGAF 358 >gi|62321058|dbj|BAD94134.1| CLP protease regulatory subunit CLPX-like [Arabidopsis thaliana] Length = 219 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 11/114 (9%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L +LN+ +LT+ +S L QYK+L + + L FTE + +A Sbjct: 68 LIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQLQFTEGATRLIA 127 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASD-LQE-----KTVVIDAEYV 419 A++ N+ GAR L++++E +L + F D + E K V++D E V Sbjct: 128 RKAMSKNT-----GARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEEAV 176 >gi|289809182|ref|ZP_06539811.1| ATP-dependent protease ATP-binding subunit HslU [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 36 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 24/35 (68%), Positives = 32/35 (91%) Query: 295 HILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSL 329 HILFIASGAF V++P+DL+PE+QGR P+RV L++L Sbjct: 1 HILFIASGAFQVAKPSDLIPELQGRLPIRVELQAL 35 >gi|154277104|ref|XP_001539397.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150414470|gb|EDN09835.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 617 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 50/154 (32%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQ------------------------ 42 +P+ + LD++++GQ AK+ +++A+ N ++R Q Sbjct: 88 LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147 Query: 43 -------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRRLARL 76 LP D + K NILL+GP+GVGKT +++ LAR+ Sbjct: 148 HPIESQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARV 207 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PF + T FT+ GY+G + + + L+ A Sbjct: 208 LSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 241 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP + + + GS + F + P DL +PE+ GR Sbjct: 400 GSEEEALYKKHLPFFTPAPLPSGSGSPVEEPTYF---NPLDLLTPVDLQTYGFIPELVGR 456 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L ILT+ ++L+ QY L GI L FT + +A A+++ + Sbjct: 457 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPARHKIASNAMSMAT 516 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V+I Sbjct: 517 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 546 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 89/178 (50%), Gaps = 16/178 (8%) Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS-DKEIDIEVADT 172 V+E +R E E+ + A++ +++ G S R + ++ + +I+ + I+ + Sbjct: 122 VQELQRQE-EEKEELKAQQARRESVEGHPIESQQRTIHTQRTTNDDIARSGPLPIDSSPL 180 Query: 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELMRDESDRLI 228 + + SN + G + VG +++ ++V+ + S+ C P + +++D + Sbjct: 181 TLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYIGEDADVCV 234 Query: 229 D--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV 284 + + D Q +GI+ LDE DK+ A +G VS EGVQ+ LL ++EG++V Sbjct: 235 HRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKIIEGTTV 290 >gi|3834447|gb|AAC70949.1| ATP-dependent Clp protease ATP-binding subunit Clpx [Streptomyces coelicolor A3(2)] Length = 139 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 7/73 (9%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLRD---ELMPKNILLVGP 61 PREI L+ Y++GQ+ AK+A+++A+ N ++R Q A R+ EL NILL+GP Sbjct: 64 PREIYEFLESYVVGQEAAKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGP 123 Query: 62 TGVGKTAISRRLA 74 TG GKT +++ LA Sbjct: 124 TGSGKTLLAQTLA 136 >gi|225554601|gb|EEH02897.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces capsulatus G186AR] Length = 621 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP + + + GS + + F + P DL +PE+ GR Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEEPTYF---NPLDLLTPVDLQTYGFIPELVGR 460 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L ILT+ ++L+ QY L GI L FT ++ +A A+++ + Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V+I Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 54/159 (33%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ----------------- 42 + +P+ + LD++++GQ AK+ +++A+ N ++ RQ+ Sbjct: 87 HLTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVE 146 Query: 43 ------------------------------LPADLRDELMPK-NILLVGPTGVGKTAISR 71 LP D + K NILL+GP+GVGKT +++ Sbjct: 147 GHPVETEFPGQQRTIHTQRTTNDDIARSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAK 206 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LAR+ PF + T FT+ GY+G + + + L+ A Sbjct: 207 TLARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220 + I+ + + + SN + G + VG +++ ++V+ + S+ C P + Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230 Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 +++D + + + D Q +GI+ LDE DK+ A +G VS EGVQ+ LL + Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288 Query: 279 VEGSSV 284 +EG++V Sbjct: 289 IEGTTV 294 >gi|23336808|ref|ZP_00121970.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Bifidobacterium longum DJO10A] Length = 202 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 6/109 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 LLPE GR PV LK L D ILT + LI QY++L +G+ L FTE +I A+A Sbjct: 76 LLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIA 135 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 D+A+ + GAR L++++ER L+D F L + K V++D V Sbjct: 136 DIAIKQGT-----GARGLRSIIERTLQDTMFQLPSLDDVKQVIVDKASV 179 >gi|295658937|ref|XP_002790028.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paracoccidioides brasiliensis Pb01] gi|226282111|gb|EEH37677.1| ATP-dependent Clp protease ATP-binding subunit clpX [Paracoccidioides brasiliensis Pb01] Length = 506 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 53/169 (31%) Query: 4 TFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR----------------------- 40 T +P+ + LD++++GQ AK+ +++A+ N ++R Sbjct: 93 TPRLTPKMLKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRREEEEEELMAQQARRES 152 Query: 41 -----------------------------QQLPADLRDELMPK-NILLVGPTGVGKTAIS 70 + LP D + K NILL+GP+GVGKT ++ Sbjct: 153 VESHPVETEFPGQQRTIHTHAANDDISRPEPLPVDTSPLTLEKSNILLLGPSGVGKTLMA 212 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 + LAR+ PF + T T+ GY+G + + + L+ A V ++ R Sbjct: 213 KTLARVLSVPFSMSDCTPLTQAGYIGEDADVCVHRLLAAANYDVAQAER 261 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 58/191 (30%) Query: 163 KEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRD 222 + + ++ + + + SN + G + VG +++ ++V+ + S+ C P Sbjct: 182 EPLPVDTSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPLTQAG 235 Query: 223 ESDRLIDMDTVHRDSIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDL 275 D+ VHR + NY GI+ LDE DKI +G VS EGVQ+ L Sbjct: 236 YIGEDADV-CVHR--LLAAANYDVAQAERGIICLDEVDKIATAKVSHGKDVSGEGVQQAL 292 Query: 276 LPLVEGSSVSTKY----------GSIN--------------------------------T 293 L ++EG++V + GS+N T Sbjct: 293 LKIIEGTTVQIQAKPERNAPRSGGSLNSNPGGSGSFGGSSFSSPAPPGSSGKAEVYNVRT 352 Query: 294 DHILFIASGAF 304 D+ILFI SGAF Sbjct: 353 DNILFIFSGAF 363 >gi|296809019|ref|XP_002844848.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma otae CBS 113480] gi|238844331|gb|EEQ33993.1| ATP-dependent Clp protease ATP-binding subunit clpX [Arthroderma otae CBS 113480] Length = 599 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 12/106 (11%) Query: 22 GQQDAKRAVAIALRNRWRRQQLPADLRDELM--------PKNILLVGPTGVGKTAISRRL 73 GQQ R + ++ R+ LP++ +D L+ NILL+GP+GVGKT +++ L Sbjct: 142 GQQ---RTIHLSAPRRYYDDNLPSE-QDPLVDSSINMLEKSNILLLGPSGVGKTLMAKTL 197 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 AR+ PF + T FT+ GY+G + + + L+ A V ++ R Sbjct: 198 ARVLSVPFSMSDCTPFTQAGYIGEDADVCVHRLLAAANYDVEQAER 243 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE+ GR P+ L L+ S ILT+ ++L+ QY L GI L FT Sbjct: 420 PSDLQAYGFIPELIGRIPITSALSPLSHSLLLRILTEPRNSLVNQYTTLFALSGIELRFT 479 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 480 TAALHKVAANAFAMST-----GARALRTEMESILADAMFEAPGSSVKFVLV 525 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%) Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 SN + G + VG +++ ++V+ + S+ C P D+ VHR Sbjct: 178 SNILLLGPSGVGKTLMAKTLARVL------SVPFSMSDCTPFTQAGYIGEDADV-CVHR- 229 Query: 237 SIQMVENY-------GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----- 284 + NY GI+ LDE DKI +G VS EGVQ+ LL ++EG+++ Sbjct: 230 -LLAAANYDVEQAERGIICLDEIDKIATAKVSHGKDVSGEGVQQALLKIIEGTTIQIQAK 288 Query: 285 ------------------------STKYG-----SINTDHILFIASGAF 304 S G +I TD+ILFI SGAF Sbjct: 289 PERNASRPSSGGNSSPGGSSYNPTSNSSGKAEVYNIRTDNILFIFSGAF 337 >gi|291402838|ref|XP_002718046.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 2 [Oryctolagus cuniculus] Length = 633 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 14/127 (11%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE---------YVRLH 422 +A+ + GAR L+++ME++L + F + V +D E Y+R Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYIRAP 606 Query: 423 IGDFPSE 429 D P E Sbjct: 607 AKDSPEE 613 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|297459396|ref|XP_001788707.2| PREDICTED: ClpX caseinolytic peptidase X homolog (E. coli) [Bos taurus] Length = 1795 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 1654 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 1713 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 1714 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 1756 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 1450 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 1509 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 1515 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 1571 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 1572 VDTTNILFVASGAFN 1586 Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 1334 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 1374 >gi|299483192|gb|ADJ19335.1| putative ATP-dependent protease ATP-binding subunit ClpX [Treponema primitia ZAS-2] Length = 230 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 E+ N+LL+GPTG GKT +++ LA+ PF V+ T TE GYVG +VE I+ L+ Sbjct: 2 EIEKSNVLLIGPTGTGKTLLAKTLAKKLKVPFAIVDATTLTEAGYVGEDVENILLKLIQS 61 Query: 110 A 110 A Sbjct: 62 A 62 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 52/156 (33%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ SV + G I Sbjct: 72 GIVYIDEIDKIARKGENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQEMIRI 131 Query: 292 NTDHILFIASGAF----------------------------------HVSRPADL----- 312 +T +ILFI GAF P DL Sbjct: 132 DTTNILFICGGAFVGLDKYIEQRVVQHPMGFGADVKERTGRNLKEMYDALHPDDLIQFGM 191 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ 348 +PE GR P+ V L+ + + DFR I+T+ + ++ Q Sbjct: 192 IPEFIGRLPITVSLEEMKREDFRGIITEPRNAIVKQ 227 >gi|325094879|gb|EGC48189.1| ATP-dependent Clp protease ATP-binding subunit clpX [Ajellomyces capsulatus H88] Length = 621 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP + + + GS + + F + P DL +PE+ GR Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEELTYF---NPLDLLTPVDLQTYGFIPELVGR 460 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L ILT+ ++L+ QY L GI L FT ++ +A A+++ + Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V+I Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 54/158 (34%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ------------------ 42 +P+ + LD++++GQ AK+ +++A+ N ++ RQ+ Sbjct: 88 LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147 Query: 43 -----------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72 LP D + K NILL+GP+GVGKT +++ Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LAR+ PF + T FT+ GY+G + + + L+ A Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220 + I+ + + + SN + G + VG +++ ++V+ + S+ C P + Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230 Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 +++D + + + D Q +GI+ LDE DK+ A +G VS EGVQ+ LL + Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288 Query: 279 VEGSSV 284 +EG++V Sbjct: 289 IEGTTV 294 >gi|240276945|gb|EER40455.1| ATP-dependent Clp protease ATP-binding subunit [Ajellomyces capsulatus H143] Length = 621 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 265 GVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGR 319 G E + + LP + + + GS + + F + P DL +PE+ GR Sbjct: 404 GSEEEALYKKHLPFFTPAPLPSGSGSPDEELTYF---NPLDLLTPVDLQTYGFIPELVGR 460 Query: 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS 379 PV L L ILT+ ++L+ QY L GI L FT ++ +A A+++ + Sbjct: 461 IPVITALSQLTHHLLLRILTEPRNSLLAQYTTLFSLSGIELRFTTPALHKIASNAMSMAT 520 Query: 380 TVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 GAR L+T ME +L D F A K V+I Sbjct: 521 -----GARGLRTEMEMILGDAMFEAPGSSVKFVLI 550 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 54/158 (34%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWR------RQQ------------------ 42 +P+ + LD++++GQ AK+ +++A+ N ++ RQ+ Sbjct: 88 LTPKILKQHLDQFVVGQDRAKKVLSVAVYNHYQRVQELQRQEEEKEELKAQQARRESVEG 147 Query: 43 -----------------------------LPADLRDELMPK-NILLVGPTGVGKTAISRR 72 LP D + K NILL+GP+GVGKT +++ Sbjct: 148 HPVETEFPGQQRTIHTQRTTNDDITRSGPLPIDSSPLTLEKSNILLLGPSGVGKTLMAKT 207 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LAR+ PF + T FT+ GY+G + + + L+ A Sbjct: 208 LARVLSVPFSISDCTPFTQAGYIGEDADVCVHRLLAAA 245 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 14/126 (11%) Query: 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYP----ELM 220 + I+ + + + SN + G + VG +++ ++V+ + S+ C P + Sbjct: 177 LPIDSSPLTLEKSNILLLGPSGVGKTLMAKTLARVL------SVPFSISDCTPFTQAGYI 230 Query: 221 RDESDRLID--MDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPL 278 +++D + + + D Q +GI+ LDE DK+ A +G VS EGVQ+ LL + Sbjct: 231 GEDADVCVHRLLAAANYDVAQA--EWGIICLDEVDKLAAAKVSHGKDVSGEGVQQALLKI 288 Query: 279 VEGSSV 284 +EG++V Sbjct: 289 IEGTTV 294 >gi|71023509|ref|XP_761984.1| hypothetical protein UM05837.1 [Ustilago maydis 521] gi|46101549|gb|EAK86782.1| hypothetical protein UM05837.1 [Ustilago maydis 521] Length = 2761 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII-RDLVDVAINI 113 NILL+GP+G GKT + R LA+ PF+ V+ T T GYVG +VE II R LV+ ++ Sbjct: 2281 NILLLGPSGSGKTLLLRTLAQALDVPFVHVDATPLTMAGYVGEDVESIIQRLLVEAGWDV 2340 Query: 114 VRESR 118 R R Sbjct: 2341 DRAQR 2345 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 24/134 (17%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P+DL +PE GR PV V L L+ D ++T+ ++L+ QY L K GI L + Sbjct: 2539 PSDLEQYGMIPEFIGRVPVSVVLNPLSHQDLIRVMTEPRNSLVDQYTSLFKLNGIELHIS 2598 Query: 364 EDSIDALADVAVNLNSTVGDIG--------------ARRLQTVMERVLEDI---SFSASD 406 +I+ + A+ S AR L+ +ME VL D S+ +S Sbjct: 2599 RGAIEEVVHRAMGTCSAANSKALVRNSADRGGGGGGARSLRRIMEDVLLDAFYESYGSSS 2658 Query: 407 LQEKTVVIDAEYVR 420 + K +++D + VR Sbjct: 2659 V--KYILVDRQSVR 2670 >gi|159479768|ref|XP_001697962.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas reinhardtii] gi|158274060|gb|EDO99845.1| ATP-dependent clp protease ATP-binding subunit [Chlamydomonas reinhardtii] Length = 561 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LL+GPTG GKT +++ LARL PF + T T+ GYVG +VE I+ L+ Sbjct: 253 ELDKSNMLLLGPTGSGKTLLAKTLARLVNVPFAMADATTLTQAGYVGDDVESILYKLLQA 312 Query: 110 A 110 Sbjct: 313 C 313 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 16/79 (20%) Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSR----EGVQRDLLPLVEGS--SVSTKYG----- 289 V GIV++DE DKI R S G ++R EGVQ+ LL ++EG+ +V K G Sbjct: 319 VAQQGIVYIDEIDKIAKR-SAEGFTITRDVSGEGVQQALLKMLEGTVVNVPEKGGRKNPR 377 Query: 290 ----SINTDHILFIASGAF 304 I+T ILFI GAF Sbjct: 378 GDFIQIDTRDILFIVGGAF 396 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRR 40 SPRE+V LD ++IGQ+ AK+ +A+A N ++R Sbjct: 100 SPRELVRALDAHVIGQEHAKKVLAVATHNHYKR 132 >gi|74000524|ref|XP_865858.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding subunit ClpX-like, mitochondrial precursor isoform 2 [Canis familiaris] Length = 142 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 1 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 60 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 61 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 103 >gi|163814186|ref|ZP_02205578.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759] gi|158450635|gb|EDP27630.1| hypothetical protein COPEUT_00340 [Coprococcus eutactus ATCC 27759] Length = 456 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 21/104 (20%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVG 65 SP +I LDR + GQ++AKRA A+ L N RRQ N+L GPTG G Sbjct: 158 SPAKIYEYLDRRVYGQKEAKRAAAMLLWNHVNGRRQ-------------NVLFAGPTGCG 204 Query: 66 KTAISRRLARLAGAPFIKVE-VTKFTEIGYVGRNVEQIIRDLVD 108 KT I R+LA+L P I + T T G+ G +R+L D Sbjct: 205 KTEIFRQLAKL--YPNIVIHNATSLTGTGWKGNTK---VRNLFD 243 >gi|327283765|ref|XP_003226611.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Anolis carolinensis] Length = 630 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 548 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A++ + GAR L+++ME++L + F + V +D E V Sbjct: 549 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 591 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339 Query: 109 VAINI 113 N+ Sbjct: 340 ANYNV 344 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 407 VDTTNILFVASGAFN 421 Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA LR + Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPATLRQQ 209 >gi|299747228|ref|XP_001836896.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis cinerea okayama7#130] gi|298407424|gb|EAU84513.2| ATP-dependent Clp protease ATP-binding subunit ClpX [Coprinopsis cinerea okayama7#130] Length = 508 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 63/166 (37%) Query: 8 SPREI------VSELDRYIIGQQDAKRAVAIALRNRWRR--------------------- 40 +PRE+ V L+++I+GQ+ AK+ +++A+ N + R Sbjct: 61 TPREVKEYRLLVQYLNQFIVGQETAKKVLSVAVYNHYNRVRANLELAMSNEDRLRTDPEI 120 Query: 41 -----------------------QQLPADLRDELMP----KNILLVGPTG---------V 64 P LR +P N+L++GPTG Sbjct: 121 EDAPDAHDGVSSATIRPIRNVAKTPPPLSLRPRQLPLFEKSNVLVIGPTGSGLMDESTLA 180 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ LAR+ PF + T FT+ GYVG +VE I+ L+ A Sbjct: 181 GKTLLAKTLARVLDVPFSASDATSFTQAGYVGEDVEMAIQRLLQAA 226 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 76/209 (36%), Gaps = 82/209 (39%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVSTKYGS----------- 290 GIV++DE DKI R S G V EGVQ+ LL ++EGS V+ + Sbjct: 236 GIVYIDEVDKIARRTSSGSEGSRDVGGEGVQQALLRMLEGSVVTVQAKGAVHAEPPGKGE 295 Query: 291 --------------------INTDHILFIASGAF--------------HVSRPADLLP-- 314 I+T ++LFI SGAF + A++LP Sbjct: 296 GIGRTGQRAPQVAPQPEVYHIDTSNVLFILSGAFVGLEGIIKQRVAKGSIGFTANILPDS 355 Query: 315 --------------------------------EIQGRFPVRVHLKSLNKSDFRLILTDTE 342 E GR P L L D R ILT+ + Sbjct: 356 ATPFFTPNRKSGKDSLLEMVETQDLVKYGFIPEFIGRLPSITTLSPLTIPDLRRILTEVK 415 Query: 343 SNLILQYKELMKTEGIILDFTEDSIDALA 371 +L+ QY+ L G+ + FT ++D + Sbjct: 416 GSLMSQYQALFGYSGVEIRFTSSALDEIC 444 >gi|74000526|ref|XP_865874.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted) isoform 3 [Canis familiaris] Length = 616 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 475 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 534 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 535 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 577 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 266 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 325 Query: 109 VAINI 113 N+ Sbjct: 326 ANYNV 330 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 336 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 392 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 393 VDTTNILFVASGAFN 407 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 155 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 195 >gi|7242140|ref|NP_006651.2| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial precursor [Homo sapiens] gi|14916956|sp|O76031|CLPX_HUMAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial; Flags: Precursor gi|7161189|emb|CAA06933.2| ClpX-like protein [Homo sapiens] gi|9665218|emb|CAC01291.1| ClpX protein [Homo sapiens] gi|119598121|gb|EAW77715.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a [Homo sapiens] gi|119598122|gb|EAW77716.1| ClpX caseinolytic peptidase X homolog (E. coli), isoform CRA_a [Homo sapiens] gi|120660350|gb|AAI30374.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens] gi|223460850|gb|AAI36488.1| ClpX caseinolytic peptidase X homolog (E. coli) [Homo sapiens] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|75070594|sp|Q5R7N3|CLPX_PONAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial; Flags: Precursor gi|55731022|emb|CAH92227.1| hypothetical protein [Pongo abelii] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|114657641|ref|XP_001174382.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 4 [Pan troglodytes] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|311245295|ref|XP_003121766.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Sus scrofa] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 406 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 407 TVQVDTTNILFVASGAFN 424 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|109081526|ref|XP_001108768.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 2 [Macaca mulatta] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|158258064|dbj|BAF85005.1| unnamed protein product [Homo sapiens] Length = 633 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|56119122|ref|NP_001007804.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial precursor [Rattus norvegicus] gi|81910247|sp|Q5U2U0|CLPX_RAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial; Flags: Precursor gi|55250758|gb|AAH85867.1| ClpX caseinolytic peptidase X homolog (E. coli) [Rattus norvegicus] gi|149041979|gb|EDL95820.1| caseinolytic peptidase X (E.coli) [Rattus norvegicus] Length = 633 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|297478977|ref|XP_002690567.1| PREDICTED: ClpX caseinolytic protease X homolog [Bos taurus] gi|296483742|gb|DAA25857.1| ClpX caseinolytic protease X homolog [Bos taurus] Length = 613 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 472 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 531 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 532 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 574 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 263 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 322 Query: 109 VAINI 113 N+ Sbjct: 323 ANYNV 327 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 333 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 389 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 390 VDTTNILFVASGAFN 404 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 152 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 192 >gi|74000522|ref|XP_852508.1| PREDICTED: similar to caseinolytic protease X (E.coli) (predicted) isoform 1 [Canis familiaris] Length = 633 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|297696878|ref|XP_002825604.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Pongo abelii] Length = 633 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|126277060|ref|XP_001367043.1| PREDICTED: similar to Caseinolytic peptidase X (E.coli) isoform 1 [Monodelphis domestica] Length = 631 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 490 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 549 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A++ + GAR L+++ME++L + F + V +D E V Sbjct: 550 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 592 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 281 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 340 Query: 109 VAINI 113 N+ Sbjct: 341 ANYNV 345 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 351 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 407 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 408 VDTTNILFVASGAFN 422 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 170 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 210 >gi|115361628|gb|ABI95884.1| ATP dependent Clp protease ATP-binding subunit ClpX1 [Pennisetum glaucum] Length = 174 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFP+ V L +LN+ +L + ++ L Q+K+L + L FT+ ++ +A Sbjct: 17 LIPEFIGRFPILVSLAALNEDQLVQVLMEPKNALGKQFKKLFSMNNVKLHFTDGALRIIA 76 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 A++ N+ GAR L+T++E +L D + D + IDA Sbjct: 77 KKAMSKNT-----GARGLRTILENILMDSMYEIPDAKSGEKRIDA 116 >gi|296213478|ref|XP_002753288.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Callithrix jacchus] Length = 633 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 406 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 407 TVQVDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|149691862|ref|XP_001498252.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 1 [Equus caballus] Length = 633 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|148694140|gb|EDL26087.1| caseinolytic peptidase X (E.coli) [Mus musculus] Length = 634 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343 Query: 109 VAINI 113 N+ Sbjct: 344 ANYNV 348 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410 Query: 291 INTDHILFIASGAFH 305 ++T ++LF+ASGAF+ Sbjct: 411 VDTTNVLFVASGAFN 425 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213 >gi|332235701|ref|XP_003267043.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Nomascus leucogenys] Length = 580 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 439 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 498 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 499 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 541 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 230 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 289 Query: 109 VAINI 113 N+ Sbjct: 290 ANYNV 294 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 300 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 353 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 354 TVQVDTTNILFVASGAFN 371 >gi|113205071|ref|NP_035932.2| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 1 [Mus musculus] Length = 634 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343 Query: 109 VAINI 113 N+ Sbjct: 344 ANYNV 348 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410 Query: 291 INTDHILFIASGAFH 305 ++T ++LF+ASGAF+ Sbjct: 411 VDTTNVLFVASGAFN 425 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213 >gi|14916542|sp|Q9JHS4|CLPX_MOUSE RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial; Flags: Precursor gi|9663733|emb|CAC01232.1| ClpX protein [Mus musculus] Length = 634 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 493 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 552 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 553 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 595 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 284 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 343 Query: 109 VAINI 113 N+ Sbjct: 344 ANYNV 348 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 410 Query: 291 INTDHILFIASGAFH 305 ++T ++LF+ASGAF+ Sbjct: 411 VDTTNVLFVASGAFN 425 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 213 >gi|114657643|ref|XP_001174375.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 599 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ TED++ A+A Sbjct: 458 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIA 517 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 518 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 560 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 249 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 308 Query: 109 VAINI 113 N+ Sbjct: 309 ANYNV 313 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 319 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 375 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 376 VDTTNILFVASGAFN 390 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 138 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 178 >gi|50545888|ref|XP_500482.1| YALI0B04158p [Yarrowia lipolytica] gi|49646348|emb|CAG82709.1| YALI0B04158p [Yarrowia lipolytica] Length = 576 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 46/151 (30%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD---------------- 49 + +PR+++++L+++I+GQ +K+ A+A+ N + R L D R Sbjct: 98 DMTPRKLLAKLNQFIVGQDRSKKVFAVAIYNHYLRSGLLIDERQWSDYMKRINAAKGKIS 157 Query: 50 ----------------------------ELMP--KNILLVGPTGVGKTAISRRLARLAGA 79 +++P N+L+VGP+G GKT +++ LA Sbjct: 158 DRWENTDEPQSTDYINVLKEEYDEETESQVIPDKANLLVVGPSGSGKTMMAKTLASFLSL 217 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P + T T+ GYVG +V+ ++ L V Sbjct: 218 PISISDCTALTQAGYVGDDVQSCVQQLYQVC 248 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 5/109 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR P V L L + D IL + ++ L+ Q++ K+ G + FT+ ++ +A Sbjct: 403 LIPELLGRAPTIVKLNHLTEEDLLRILIEPKNALVEQFRVKFKSFGTRIVFTKPALRIIA 462 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A++ +GAR L VME++ + ++ K V++D+ +R Sbjct: 463 KTALSEG-----LGARGLHAVMEKICLNANYECPGTSTKYVLVDSSVLR 506 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 23/83 (27%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------STKYG----- 289 +GI+ LDE DK+ R+ G+G VS EGVQ+ LL ++EG+ V T G Sbjct: 257 HGIIVLDEIDKLAKRE-GSGRDVSGEGVQQSLLKMLEGTLVQISGTPGRAQTTAGLPGGG 315 Query: 290 --------SINTDHILFIASGAF 304 +INT +ILFI GAF Sbjct: 316 SAMPKESVTINTQNILFILMGAF 338 >gi|281347326|gb|EFB22910.1| hypothetical protein PANDA_002175 [Ailuropoda melanoleuca] Length = 607 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 466 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 525 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 526 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 568 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 257 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 316 Query: 109 VAINI 113 N+ Sbjct: 317 ANYNV 321 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 327 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 383 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 384 VDTTNILFVASGAFN 398 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 146 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 186 >gi|167468556|ref|ZP_02333260.1| heat shock protein HslVU, ATPase subunit HslU [Yersinia pestis FV-1] Length = 54 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 384 IGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 +GARRL TV+ER++EDIS+ AS+ +++ IDAEYV H+ + ++ D+ FIL Sbjct: 1 MGARRLHTVLERLMEDISYDASESSGQSITIDAEYVGKHLDELVADEDLSRFIL 54 >gi|124006085|ref|ZP_01690921.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla marina ATCC 23134] gi|123988262|gb|EAY27915.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Microscilla marina ATCC 23134] Length = 370 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRY-IIGQQDAKRAVAI-ALRNRWRRQQLPAD--LRDELMPK-NILLVGPT 62 +P++I +++ + IGQ A +A+++ A R+ R + + D +DEL PK N LLVGPT Sbjct: 19 TPQDIYNKVRLHGYIGQHKAVQAISLMACRHIRRLKNVFVDKIPKDELPPKDNYLLVGPT 78 Query: 63 GVGKTA-ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT + ++ P +++T ++E GY+G++V I+ LV+ A Sbjct: 79 GSGKTYLVDIVFNKILHLPTTVIDITSYSETGYIGQDVVSILTRLVNAA 127 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 66/228 (28%) Query: 245 GIVFLDEFDKI-------VARDSGNGIGVSREGVQRDLLPLVEGSSV-------STKYG- 289 G+V LDEFDK+ V G VS GVQ++LL ++EG+ V + Y Sbjct: 137 GVVCLDEFDKLSTSKNSAVFAGQGTTKDVSGFGVQKELLKILEGAEVDVPEELSHSAYAP 196 Query: 290 --SINTDHILFIASGAFH----------------------------------------VS 307 +++T+ I F+A GAF Sbjct: 197 RDTMSTEFISFVALGAFSGITKTINHHNQQIGFGSKTETAYTDAIAYQLNENDLNKTVYF 256 Query: 308 RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSI 367 + ++PE+ GRF V L+K+ + IL N + +Y++ + L +D + Sbjct: 257 QEYGIMPELIGRFSRIVPFHPLDKAHLQDILV---KNTLKRYEKELALVKSSLKIDDDVL 313 Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS-ASDLQEKTVVI 414 + + D A+ + + GAR L+T + +ED F S L+++ I Sbjct: 314 EKIVDQAIEMET-----GARGLRTSLFGYIEDACFELYSHLEQQNTKI 356 >gi|301756913|ref|XP_002914296.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Ailuropoda melanoleuca] Length = 633 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 492 MIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 551 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 552 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVV 594 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 109 VAINI 113 N+ Sbjct: 343 ANYNV 347 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|66511659|ref|XP_394615.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Apis mellifera] Length = 586 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +L+K+ ILT+ ++ +I QY+ L + + L FT ++++A+A Sbjct: 458 MIPEFVGRFPVLVPFHTLDKNMLVRILTEPQNAMIPQYQMLFSMDKVDLTFTSEALNAIA 517 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+ +ME +L + F Sbjct: 518 SLAMEKKT-----GARGLRAIMESLLLEPMF 543 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 249 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 308 Query: 110 AINIV 114 A +V Sbjct: 309 ANYVV 313 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 319 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 372 Query: 291 ----INTDHILFIASGAF 304 I+T +ILF+ASGA+ Sbjct: 373 DTLQIDTTNILFVASGAY 390 >gi|315178884|gb|ADT85798.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC 11218] Length = 46 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/36 (72%), Positives = 30/36 (83%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL 43 +PREIV EL+R+IIGQ +AKRAVAIALRNRW L Sbjct: 5 TPREIVHELNRHIIGQDNAKRAVAIALRNRWASHAL 40 >gi|169597035|ref|XP_001791941.1| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15] gi|160707432|gb|EAT90945.2| hypothetical protein SNOG_01296 [Phaeosphaeria nodorum SN15] Length = 527 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L N++++GPTGVGKT + + LA+ G P + T FT+ GY+G +VE + L+ Sbjct: 185 QLEKSNVMILGPTGVGKTLMCKTLAKTLGVPIAMSDCTTFTQAGYIGDDVESCVARLLSA 244 Query: 110 A 110 A Sbjct: 245 A 245 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 41/101 (40%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV----------------STKY 288 GI+ LDE DKI G V EGVQ+ LL ++EG++V ST Sbjct: 255 GIIVLDEIDKIAGAKIAYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSAGKGPGGSTGR 314 Query: 289 GS-------------------------INTDHILFIASGAF 304 GS + TD+ILFI +GAF Sbjct: 315 GSPYDGPGSGESRSPPGPPGGKGEVFNVRTDNILFICTGAF 355 >gi|258571573|ref|XP_002544590.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus reesii 1704] gi|237904860|gb|EEP79261.1| ATP-dependent Clp protease ATP-binding subunit clpX [Uncinocarpus reesii 1704] Length = 524 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 42/65 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 N+LL+GP+GVGKT +++ LAR+ PF + T FT+ GY+G + + ++ L+ A V Sbjct: 102 NVLLLGPSGVGKTLMAKTLARVLSVPFSMSDCTPFTQAGYIGEDADVCVQRLLAAANYDV 161 Query: 115 RESRR 119 ++ R Sbjct: 162 AQAER 166 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 P DL +PE+ GR P+ L L+KS ILT+ ++L+ QY L GI L FT Sbjct: 353 PPDLQSYGFIPELVGRIPITTALSPLSKSLLLRILTEPRNSLVNQYTALFALSGIELCFT 412 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 ++ +A A +++ GAR L+T ME +L D F A K V++ Sbjct: 413 TSALHKIAANAFAVST-----GARALRTEMETILGDAMFEAPGSSVKFVLV 458 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 39/99 (39%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKY----------GSIN-- 292 GI+ LDE DKI +G VS EGVQ+ LL ++EG++V + GS N Sbjct: 167 GIICLDEVDKIATAKVSHGKDVSGEGVQQALLKIIEGTTVQIQAKPERNAPRQGGSSNNF 226 Query: 293 ---------------------------TDHILFIASGAF 304 TD+ILFI SGAF Sbjct: 227 PGSGLGGSSFSSSSPGSPGKSEVYNVRTDNILFIFSGAF 265 >gi|156358407|ref|XP_001624511.1| predicted protein [Nematostella vectensis] gi|156211296|gb|EDO32411.1| predicted protein [Nematostella vectensis] Length = 506 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 41/65 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ +AR PF + T T+ GYVG ++E +I L+ A V Sbjct: 191 NILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYVGEDIESVIAKLLQEAGGNV 250 Query: 115 RESRR 119 ++++ Sbjct: 251 EKAQQ 255 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 5/109 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + L+ QY+ L + + L D++ +A Sbjct: 395 MIPEFIGRLPVVVSLHSLDEDTLVKILTEPRNVLVPQYQALFAMDKVDLQLESDALQLIA 454 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 A+ + GAR L+ ++E +L D F A TV I + VR Sbjct: 455 QQALEKKT-----GARGLRAILENLLLDPMFDAPGSDIVTVRITEDVVR 498 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 11/72 (15%) Query: 245 GIVFLDEFDKIVARDSGNGI-GVSREGVQRDLLPLVEGSSVSTK----------YGSINT 293 GIVFLDE DKI A + + V EGVQ+ LL ++EG+ V+ +++T Sbjct: 256 GIVFLDEVDKIGAVPGVHNLRDVGGEGVQQGLLKILEGTVVNVPERNSRKMRGDTVAVDT 315 Query: 294 DHILFIASGAFH 305 +ILF+ASGAF+ Sbjct: 316 SNILFVASGAFN 327 >gi|320586123|gb|EFW98802.1| ATPase AAA-2 [Grosmannia clavigera kw1407] Length = 586 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L+++ PF + + FT+ GYVG++VE I L+ Sbjct: 201 NLLLIGPTGVGKTYILETLSKVLNIPFAICDCSSFTQAGYVGKDVETCIERLL 253 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 10/101 (9%) Query: 309 PADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFT 363 PADL +PE+ GR L L+ + ILT+ +LI QY L +T L FT Sbjct: 428 PADLQAFGFIPELIGRLHNICALTPLSVDELYRILTEPRHSLIAQYTALFETYPSRLYFT 487 Query: 364 EDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 + ++ A+A+ A + D GAR L+ +ERVL + F A Sbjct: 488 QRALHAIAERASKV-----DTGARGLKMELERVLAEPMFDA 523 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 36/97 (37%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEG----------------SSVSTK 287 +GIV LDEFDKI ++ N + EGVQ+ LL LVEG S +++ Sbjct: 265 FGIVILDEFDKIARKEEANNRDIGGEGVQQALLKLVEGTKVTVSIKDNHSSRSASPITST 324 Query: 288 YGS--------------------INTDHILFIASGAF 304 YGS I+T ILF+ SGAF Sbjct: 325 YGSPNASLPPQGSSASGKIEQYTIDTSRILFVFSGAF 361 >gi|167465317|ref|ZP_02330406.1| ATP-dependent protease ATP-binding subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 70 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 45/70 (64%) Query: 368 DALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFP 427 + +A +AV +N + +IGARR ++E++LED+SF A +L +T++I EYVR + + Sbjct: 1 EEIARIAVEVNQSTENIGARRSHRILEKLLEDLSFEAPELTLETMLITPEYVREKLSNIV 60 Query: 428 SETDMYHFIL 437 D+ +IL Sbjct: 61 ENRDLSQYIL 70 >gi|198429767|ref|XP_002119878.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Ciona intestinalis] Length = 393 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%) Query: 46 DLRDELMP-----KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 +L DE P NI+++GPTG GKT +++ LAR PF + T T+ GYVG ++E Sbjct: 26 NLEDESSPITLEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIE 85 Query: 101 QIIRDLV 107 +I L+ Sbjct: 86 SVIAKLL 92 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR P+ V L SL+ ILT+ + ++ Q++ L + L T ++ A+A Sbjct: 246 MIPEFVGRLPITVPLHSLSNEHLTKILTEPRNAVVPQFEALFNMDKSDLAITPSALRAIA 305 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 D+A+ + GAR L+++ME+++ D + V ID + VR Sbjct: 306 DLALERKT-----GARGLRSIMEQLMLDPMYDVPGSDIIGVCIDDDVVR 349 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL ++EG+ V+ + Sbjct: 105 GIVFLDEVDKISSVPGIHQLRDVGG------EGVQQGLLKMLEGTVVNVPERNSRKLRGD 158 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 159 SVVVDTTNILFVASGAFN 176 >gi|224062774|ref|XP_002200002.1| PREDICTED: ClpX caseinolytic protease X homolog [Taeniopygia guttata] Length = 630 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339 Query: 109 VAINI 113 NI Sbjct: 340 ANYNI 344 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 548 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A++ + GAR L+++ME++L + F + V +D + V Sbjct: 549 RLALDRKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 591 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 407 VDTTNILFVASGAFN 421 >gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 617 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL +VA Sbjct: 361 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-VRDLFNVA 417 >gi|148223569|ref|NP_001090028.1| ClpX caseinolytic peptidase X homolog [Xenopus laevis] gi|66911151|gb|AAH97522.1| MGC114642 protein [Xenopus laevis] Length = 624 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 274 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 333 Query: 109 VAINI 113 N+ Sbjct: 334 ANYNV 338 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L +ED++ A+A Sbjct: 483 MIPEFVGRLPVVVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSISEDALRAIA 542 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 543 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVV 585 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 344 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 400 Query: 291 INTDHILFIASGAFH 305 ++T +ILF++SGAF+ Sbjct: 401 VDTTNILFVSSGAFN 415 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 6/56 (10%) Query: 1 MKLTFN----FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 MKL F P++I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 148 MKLAFQQKPPPPPKKIFNYLDKYVVGQAFAKKVLSVAVYNHYKRIYNNIPANLRQQ 203 >gi|323650020|gb|ADX97096.1| mitochondrial ATP-dependent clp protease ATP-binding subunit clpx-like [Perca flavescens] Length = 194 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NI+L+GPTG GKT +++ LAR PF + T T+ GYVG ++E +I L+ Sbjct: 40 KLEKSNIILLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 99 Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136 A V ++++ DEV + S+ ++ D Sbjct: 100 ANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 131 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 110 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTVVNVPEKNSRKLRGE 163 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 164 TLQVDTTNILFVASGAFN 181 >gi|114657645|ref|XP_001174360.1| PREDICTED: ClpX caseinolytic protease X homolog isoform 1 [Pan troglodytes] Length = 553 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136 A V ++++ DEV + S+ ++ D Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|298204408|emb|CBI16888.3| unnamed protein product [Vitis vinifera] Length = 471 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL +VA Sbjct: 215 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-VRDLFNVA 271 >gi|241558211|ref|XP_002400180.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis] gi|215499741|gb|EEC09235.1| ATP-dependent Clp-type protease, putative [Ixodes scapularis] Length = 358 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V SL++ ILT+ + L+ QY+ L + + L F +D++ A+A Sbjct: 223 MIPEFVGRFPVLVPFHSLSEDMLVQILTEPRNALVPQYQMLFGMDKVELTFDQDALRAIA 282 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE-----YVRLHIGDF 426 +A+ + GAR L+ +ME +L + F +V I E L+I Sbjct: 283 RLAMERKT-----GARGLRAIMETILLEPMFEIPGSDVVSVHISHECAMGKCAPLYIKGR 337 Query: 427 PSETDMY 433 P + +MY Sbjct: 338 PGDREMY 344 >gi|169841963|ref|ZP_02875068.1| ATP-dependent protease ATP-binding subunit [candidate division TM7 single-cell isolate TM7a] Length = 86 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 EL N+LLVGPTG GKT +++ LA+ P + T TE GYVG +VE ++ L+ Sbjct: 2 ELQKSNVLLVGPTGSGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKA 61 Query: 110 A 110 A Sbjct: 62 A 62 >gi|71895647|ref|NP_001025723.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Gallus gallus] gi|53128038|emb|CAG31266.1| hypothetical protein RCJMB04_4h24 [Gallus gallus] Length = 630 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 489 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 548 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D + V Sbjct: 549 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 591 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 280 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 339 Query: 109 VAINI 113 N+ Sbjct: 340 ANYNV 344 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 350 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 406 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 407 VDTTNILFVASGAFN 421 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 169 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQ 209 >gi|12053339|emb|CAB66856.1| hypothetical protein [Homo sapiens] Length = 533 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136 A V ++++ DEV + S+ ++ D Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|312210457|emb|CBX90544.1| hypothetical protein [Leptosphaeria maculans] Length = 602 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+L++GPTGVGKT + + LA+ G P + T FT+ GY+G +VEQ + L + Sbjct: 194 NVLILGPTGVGKTLMCKTLAKTLGIPISMSDCTTFTQAGYIGDDVEQCVARLFSAS 249 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 39/99 (39%) Query: 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV---------STKYG------ 289 GI+ LDE DKI G V EGVQ+ LL ++EG++V ST+ G Sbjct: 259 GIIVLDEIDKIAGAKLSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSSTRPGGASGRG 318 Query: 290 ------------------------SINTDHILFIASGAF 304 +I TD+ILFI +GAF Sbjct: 319 SPVDMYQSPTPPPPPPGGAKGEVFNIRTDNILFICTGAF 357 Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 305 HVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGII 359 HV +PADL +PE+ GR P + +L++ +LT+ + +L+ Q + + Sbjct: 435 HV-QPADLQKYGMIPELIGRIPTVCAVSALDEGALVRVLTEPKDSLVRQEEHKAHLRNME 493 Query: 360 LDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 L FT ++ +A A + + GAR L+ V++++L + K +++ Sbjct: 494 LRFTTGALREIARKASKMGT-----GARGLRHVVDQLLLQAKYETPGSSVKHILV 543 >gi|7801087|emb|CAB91482.1| related to MCX1 protein [Neurospora crassa] Length = 563 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 55/157 (35%) Query: 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWR--------------------RQQLPA 45 F PR++ +D Y++GQ AK+ + + N ++ RQ+ Sbjct: 65 QFYPRDLKRRVDDYVVGQDRAKKTICSVIFNHYQNIRRRQHHEIQDQRQREKLQRQRYAR 124 Query: 46 DLRD------------ELMP-----------------------KNILLVGPTGVGKTAIS 70 D RD ++ P N+LL+GPTGVGKT I Sbjct: 125 DHRDLQDREGYSGSSRDIHPTPSVDDFYIPEDTNAPQRVKIDKSNLLLIGPTGVGKTYIL 184 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 L++ PF + FT+ GY+G++VE I L+ Sbjct: 185 ETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLL 221 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +GIV LDEFDKI R++ NG V EGVQ+ LL LVEG+ V+ Sbjct: 233 HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 274 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++ PADL +PE+ GR L L+ + ILT+ ++L+ QY L +T L Sbjct: 404 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 463 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 FT ++ A+A+ A + GAR L+ MERVL + + A Sbjct: 464 YFTRKALYAIAERAAK-----NETGARGLKMEMERVLAEPMYDA 502 >gi|114657639|ref|XP_001174378.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 533 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342 Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136 A V ++++ DEV + S+ ++ D Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRD 374 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 353 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 409 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 410 VDTTNILFVASGAFN 424 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQQ 212 >gi|326926841|ref|XP_003209605.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Meleagris gallopavo] Length = 609 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-D 108 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ D Sbjct: 259 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 318 Query: 109 VAINI 113 N+ Sbjct: 319 ANYNV 323 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ TED++ A+A Sbjct: 468 MIPEFVGRLPVVVPLHSLDEKTLVRILTEPRNAVVPQYQALFSMDKCELNVTEDALKAIA 527 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D + V Sbjct: 528 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKDVV 570 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 329 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 385 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 386 VDTTNILFVASGAFN 400 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRR--QQLPADLRDE 50 I + LD+Y++GQ AK+ +++A+ N ++R +PA+LR + Sbjct: 148 IYNYLDKYVVGQCFAKKVLSVAVYNHYKRIYNNIPANLRQQ 188 >gi|262198639|ref|YP_003269848.1| ATPase AAA [Haliangium ochraceum DSM 14365] gi|262081986|gb|ACY17955.1| ATPase AAA-2 domain protein [Haliangium ochraceum DSM 14365] Length = 384 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 64/109 (58%), Gaps = 6/109 (5%) Query: 8 SPREIVSELDRYII-GQQDAKRAVAI-ALRNRWRRQQLPADLRDE-LMPK--NILLVGPT 62 SPRE+ L+ GQ A+RA+ + A R+ R +++ D D L+P+ N L+VGPT Sbjct: 26 SPREMFQRLESLGYRGQPTARRALCLMAYRHVRRIKRIYLDGGDRGLLPRKANYLMVGPT 85 Query: 63 GVGKTAISRRLA-RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT + +L ++ P + V++T ++E GYVG++ I+ L+ A Sbjct: 86 GCGKTFLVEQLFDKILKLPTVLVDITTYSETGYVGQDPSSILTRLLHAA 134 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 17/86 (19%) Query: 236 DSIQMVENYGIVFLDEFDKIVARDSG---NGIGVSRE----GVQRDLLPLVEGSSV---- 284 D ++ + GIV LDEFDKI + + G G +++ GVQR+LL ++E S V Sbjct: 135 DDNPLMASIGIVCLDEFDKIASGQNNAVFAGAGTTKDVTGMGVQRELLKMLESSEVVVPL 194 Query: 285 ---STKYGS---INTDHILFIASGAF 304 + YG ++T I F+A+GAF Sbjct: 195 ELTHSSYGDHVVMSTADIAFVAAGAF 220 >gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa] gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa] Length = 556 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 7/81 (8%) Query: 30 VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89 + + L+ Q+L A L P+ +LLVGP G GKT ++R +A AG PF V ++F Sbjct: 283 IVLCLQGAMNYQKLGAKL-----PRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEF 337 Query: 90 TEIGYVGRNVEQIIRDLVDVA 110 E+ +VGR + IRDL + A Sbjct: 338 VEL-FVGRGAAR-IRDLFNAA 356 >gi|46116944|ref|XP_384490.1| hypothetical protein FG04314.1 [Gibberella zeae PH-1] Length = 604 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 10/104 (9%) Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++ PADL +PE+ GR L L+K D ILT+ ++L+ QY L +T L Sbjct: 446 LTTPADLQSFGFIPELIGRLHNICALSPLSKEDLFRILTEPRNSLVAQYTALFETYPSRL 505 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 FTE S+ A+A+ A + GAR L+ MERVL + F A Sbjct: 506 FFTEKSLYAIAERAA-----ASETGARGLKMEMERVLAEPMFDA 544 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE I L+ Sbjct: 226 NLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLL 278 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 30/42 (71%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 YGIV LDEFDKI R++ G V EGVQ+ LL LVEG+ V+ Sbjct: 290 YGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVT 331 >gi|321470305|gb|EFX81282.1| hypothetical protein DAPPUDRAFT_102627 [Daphnia pulex] Length = 375 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG N+E +I L+ D N+ Sbjct: 99 NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGENIESVIAKLLQDANYNV 158 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 164 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNAPRKLRG 217 Query: 291 ----INTDHILFIASGAF 304 ++T +ILF+ASGA+ Sbjct: 218 ETIQVDTTNILFVASGAY 235 >gi|113931262|ref|NP_001039078.1| ClpX caseinolytic peptidase X homolog [Xenopus (Silurana) tropicalis] gi|89273895|emb|CAJ83484.1| ClpX caseinolytic protease X homolog [Xenopus (Silurana) tropicalis] Length = 377 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 27 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 86 Query: 110 A 110 A Sbjct: 87 A 87 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L ED++ A+A Sbjct: 236 MIPEFVGRLPVVVPLHSLDEQTLVRILTEPRNAVVPQYQALFSMDKCELSINEDALRAIA 295 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 +A+ + GAR L+++ME++L + F + V +D E V Sbjct: 296 RLALERKT-----GARGLRSIMEKLLLEPMFEVPNSDIVCVEVDQEVV 338 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 23/78 (29%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI + RD G EGVQ+ LL L+EG+ V+ + Sbjct: 97 GIVFLDEVDKIGSVPGIHQLRDVGG------EGVQQGLLKLLEGTIVNVPEKNSRKLRGE 150 Query: 291 ---INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 151 TVQVDTTNILFVASGAFN 168 >gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis] gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis] Length = 636 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + IRDL VA Sbjct: 380 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFKVA 436 >gi|198412228|ref|XP_002121704.1| PREDICTED: similar to ATP-dependent Clp protease ATP-binding subunit clpX, partial [Ciona intestinalis] Length = 140 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 10/101 (9%) Query: 46 DLRDELMP-----KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 +L DE P NI+++GPTG GKT +++ LAR PF + T T+ GYVG ++E Sbjct: 32 NLEDETSPITLEKSNIVMLGPTGSGKTLLAQTLARCLDVPFAICDCTTLTQAGYVGEDIE 91 Query: 101 QIIRDLVDVAINIVRESRR-----DEVREQASINAEERILD 136 +I L+ A V + + DEV + +S+ ++ D Sbjct: 92 SVIAKLLQDAGGHVERAEQGIVFLDEVDKISSVPGIHQLRD 132 >gi|291221693|ref|XP_002730831.1| PREDICTED: ClpX caseinolytic protease X homolog [Saccoglossus kowalevskii] Length = 608 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NILL+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 269 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLL 321 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V L SL++ ILT+ + L+ Q+ L+ + L FT ++ A+A Sbjct: 476 MIPEFVGRFPVAVSLTSLDEEMLVRILTEPRNALVPQFHALLGMDKAELTFTPGALKAIA 535 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+ ++E VL D F Sbjct: 536 QMALERKT-----GARGLRAIVEGVLLDAMF 561 >gi|307203708|gb|EFN82674.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Harpegnathos saltator] Length = 589 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 252 KLEKSNILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 311 Query: 110 AINIV 114 A +V Sbjct: 312 ANYVV 316 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 5/111 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +L++ ILT+ ++ ++ Q++ L + + L F ++++A+A Sbjct: 461 MIPEFVGRFPVLVPFHTLDRDMLVRILTEPKNAIVPQFQMLFSMDKVELTFDINALNAIA 520 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLH 422 +A+ + GAR L+ +ME +L D F +V I + V+ H Sbjct: 521 SLAMERKT-----GARGLRAIMESLLLDPMFEVPGSDVMSVHITEQCVKGH 566 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 322 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 375 Query: 291 ----INTDHILFIASGAF 304 ++T +ILF+ASGA+ Sbjct: 376 ETLQVDTTNILFVASGAY 393 >gi|196250174|ref|ZP_03148868.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus sp. G11MC16] gi|196210358|gb|EDY05123.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Geobacillus sp. G11MC16] Length = 159 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 8/108 (7%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT ++ ++ QYK++++ +G+ L+F E ++ +A Sbjct: 32 LIPEFIGRLPVITTLEPLDEQALIDILTKPKNAIVKQYKKMLELDGVELEFEEAALREIA 91 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F S D+Q+ + +D Sbjct: 92 KKAIERKT-----GARGLRSIIEGIMLDVMFELPSREDVQKCIITVDT 134 >gi|332018141|gb|EGI58750.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Acromyrmex echinatior] Length = 592 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A +V Sbjct: 259 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 318 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +L++ ILT+ ++ +I QY+ L + + L F +++A+A Sbjct: 463 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIIPQYQMLFSMDKVELTFDTHALNAIA 522 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+ +ME +L + F Sbjct: 523 SLAMERKT-----GARGLRAIMESLLLEPMF 548 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 324 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 377 Query: 287 KYGSINTDHILFIASGAF 304 + ++T +ILF+ASGA+ Sbjct: 378 EMLQVDTTNILFVASGAY 395 >gi|322790207|gb|EFZ15206.1| hypothetical protein SINV_03991 [Solenopsis invicta] Length = 588 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A +V Sbjct: 255 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 314 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +L++ ILT+ ++ ++ QY+ L + + L F +++A+A Sbjct: 459 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVHALNAIA 518 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+ +ME +L + F Sbjct: 519 SLAMERKT-----GARGLRAIMESLLLEPMF 544 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 320 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 373 Query: 287 KYGSINTDHILFIASGAF 304 + ++T +ILF+ASGA+ Sbjct: 374 EMLQVDTTNILFVASGAY 391 >gi|299473631|emb|CBN78025.1| conserved unknown protein [Ectocarpus siliculosus] Length = 622 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 35/52 (67%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 N+++VGPTG GKT +++ LA+L P + + T T+ GYVG +VE I+ L Sbjct: 315 NVMIVGPTGSGKTLLAKTLAKLVDVPLVIADATCLTQAGYVGEDVESILHKL 366 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 44/112 (39%) Query: 245 GIVFLDEFDKI--------VARDSGNGIGVSREGVQRDLLPLVEGSSVS----------- 285 GIV+LDE DKI + RD VS EGVQ+ LL ++EG+ V+ Sbjct: 380 GIVYLDEIDKISRKMENVSITRD------VSGEGVQQALLKILEGAIVNVPKDGGRKNPR 433 Query: 286 TKYGSINTDHILFIASGA------------------FHVSRPADLL-PEIQG 318 + + ++T +ILFI GA F + PADL PE+QG Sbjct: 434 SDFIQVDTTNILFICGGAFAGLEHLINNRIAKSSIGFGANLPADLTNPEMQG 485 >gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana] gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana] gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana] Length = 622 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + IRDL + A Sbjct: 366 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 422 >gi|307180270|gb|EFN68303.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Camponotus floridanus] Length = 593 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 38/60 (63%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 NILL+GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A +V Sbjct: 260 NILLLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYVV 319 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V +L++ ILT+ ++ ++ QY+ L + + L F D+++A+A Sbjct: 464 MIPEFVGRFPVLVPFHTLDRDMLARILTEPKNAIVPQYQMLFSMDKVELTFDVDALNAIA 523 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +A+ + GAR L+ +ME +L + F Sbjct: 524 SLAMERKT-----GARGLRAIMESLLLEPMF 549 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 325 GIVFLDEVDKIGAIPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSSRKLRG 378 Query: 287 KYGSINTDHILFIASGAF 304 + ++T +ILF+ASGA+ Sbjct: 379 EMLQVDTTNILFVASGAY 396 >gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana] Length = 622 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + IRDL + A Sbjct: 366 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 422 >gi|213621494|ref|ZP_03374277.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 67 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 31/50 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 EL NILL GPTG GKT ++ LARL PF + T TE GYVG +V Sbjct: 18 ELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 67 >gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] Length = 616 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + IRDL + A Sbjct: 360 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEL-FVGRGAAR-IRDLFNAA 416 >gi|326680427|ref|XP_002667004.2| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Danio rerio] Length = 618 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NI+L+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 272 KLEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 331 Query: 110 AINIVRESRR-----DEVREQASINAEERILD 136 A V ++++ DEV + S+ ++ D Sbjct: 332 ANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 363 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 14/120 (11%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ T D++ A+A Sbjct: 482 MIPEFVGRLPVVVPLHSLDEEMLVQILTEPRNAVVPQYQALFSMDKCELNVTSDALRAIA 541 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS-------ASDLQEKTVVIDAE--YVRLH 422 +A+ + GAR L+++ME++L + F A +L + V E Y+R H Sbjct: 542 RLALERKT-----GARGLRSIMEKLLLEPMFEVPQSDIIAVELNKDVVQGKCEPRYIRTH 596 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 342 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 398 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 399 VDTTNILFVASGAFN 413 >gi|302900533|ref|XP_003048281.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729214|gb|EEU42568.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 603 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 10/104 (9%) Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++ PADL +PE+ GR L L+K D ILT+ +++L+ QY L +T L Sbjct: 446 LTTPADLQSFGFIPELIGRLHNICALSPLSKDDLFRILTEPKNSLVAQYTALFETYPSRL 505 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 FTE ++ A+A+ A + GAR L+ MERVL + F A Sbjct: 506 FFTEKALYAIAERAA-----ASETGARGLKMEMERVLAEPMFDA 544 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE I L+ Sbjct: 226 NLLLIGPTGVGKTYILETLSKKINVPFSICDCNSFTQAGYIGQDVETCIERLL 278 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +GIV LDEFDKI R++ G V EGVQ+ LL LVEG+ V+ Sbjct: 290 HGIVVLDEFDKIARRETTTGRDVGGEGVQQALLKLVEGTKVT 331 >gi|1616640|gb|AAB16818.1| unknown [Azospirillum brasilense] Length = 186 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 6/109 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L+++ ILT ++ L+ QY+ L + E + L+F++D++ ++ Sbjct: 61 LIPEFIGRLPVVATLSDLDETALVEILTKPKNALVKQYQRLFEMEDVRLEFSDDALRTIS 120 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 A+ + GAR L+++ME +L D F L ++++++ E V Sbjct: 121 HKAIQRKT-----GARGLRSIMESILLDPMFDLPGLSGVESILVNKEVV 164 >gi|71901994|ref|ZP_00684041.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella fastidiosa Ann-1] gi|71728239|gb|EAO30423.1| ATP-dependent Clp protease ATP binding subunit Clpx [Xylella fastidiosa Ann-1] Length = 161 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++S ILT+ ++ + Q+K+L + E + L+F +D++ A+A Sbjct: 37 LIPEFVGRLPVVATLDELDESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVA 96 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+T++E VL D + Sbjct: 97 RKALKRKT-----GARGLRTIVELVLLDTMY 122 >gi|22532109|gb|AAM97841.1|AF447727_3 ATP-dependent protease Clp ATP-binding subunit ClpX [Pseudomonas syringae] Length = 191 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 10/107 (9%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L+++ ILT+ ++ L QY +L + EG+ L+F D++ ++A Sbjct: 65 LIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVA 124 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID 415 A+ + GAR L++++E VL D + S SD+ + VVID Sbjct: 125 RRALERKT-----GARGLRSILEGVLLDTMYEIPSQSDVSK--VVID 164 >gi|223648098|gb|ACN10807.1| ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial precursor [Salmo salar] Length = 627 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 +L NI+L+GPTG GKT +++ LA+ PF + T T+ GYVG ++E +I L+ Sbjct: 276 KLEKSNIVLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 335 Query: 110 A 110 A Sbjct: 336 A 336 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 14/118 (11%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + +I QY+ L + L+ T +++ A+A Sbjct: 485 MIPEFVGRLPVVVPLHSLDEETLVRILTEPRNAVIPQYQALFNMDKCELNVTTEALRAIA 544 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQE----KTVVI---DAEYVR 420 +A+ + GAR L+++ME++L + F SD+ K VV+ + +YVR Sbjct: 545 RLALERKT-----GARGLRSIMEKLLLEPMFEVPCSDIMAVELTKDVVLGKSEPQYVR 597 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 346 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEKNSRKLRGETVQ 402 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 403 VDTTNILFVASGAFN 417 >gi|310798046|gb|EFQ32939.1| ATP-dependent Clp protease [Glomerella graminicola M1.001] Length = 585 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 41 QQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 ++ PA + ++ N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE Sbjct: 193 EEPPAPPQVKIDKSNLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVE 252 Query: 101 QIIRDLV 107 + L+ Sbjct: 253 TCVERLL 259 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 40/197 (20%) Query: 228 IDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE--------GVQRDL---- 275 +D T++ +I V V LD+ +V R S +G E G Q DL Sbjct: 349 VDQYTINTTNILFVFCGAFVGLDKV--VVRRVSKPSMGFGSELRGKQSLSGNQHDLPRHL 406 Query: 276 ---LPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADL-----LPEIQGRFPVRVHLK 327 LP V + ++ Y ++ ++ P DL +PE+ GR L Sbjct: 407 FSHLPHVSTDASASSYTPLD-------------LTTPVDLQTFGFIPELIGRVHNICALS 453 Query: 328 SLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGAR 387 L+ SD ILT+ ++L+ QY L +T L FT+ ++ A+A+ AV + GAR Sbjct: 454 PLSLSDLYRILTEPRNSLVAQYTALFETYPSRLHFTKKALYAIAERAVK-----AETGAR 508 Query: 388 RLQTVMERVLEDISFSA 404 L+ MERVL + F A Sbjct: 509 GLKMEMERVLAEPIFDA 525 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +GI+ LDEFDK+ R+S NG V EGVQ+ LL LVEGS V+ Sbjct: 271 HGIIVLDEFDKLAKRESMNGRDVGGEGVQQALLKLVEGSKVT 312 >gi|153871194|ref|ZP_02000428.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS] gi|152072343|gb|EDN69575.1| ClpX, ATPase regulatory subunit [Beggiatoa sp. PS] Length = 207 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE+ GR PV L+ L + ILT+ ++ L QYK L + EG L++ +++ A+A Sbjct: 81 LIPELVGRLPVTTTLEELEEEQLVQILTEPKNALTKQYKRLFEMEGTELEWRPEALKAVA 140 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYV 419 AV N+ GAR L++++E+VL D + + T V+ E V Sbjct: 141 RKAVTRNT-----GARGLRSILEQVLLDTMYELPSMNNATKVVVDETV 183 >gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] Length = 651 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A V L N R +++ A L P+ LLVGP G GKT +++ +A Sbjct: 183 VAGQEEAKEALKEVVDFLENPKRYEEIGAKL-----PRGALLVGPPGTGKTLMAKAVAGE 237 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 238 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 269 >gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa] Length = 635 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + IR+L VA Sbjct: 379 LPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEM-FVGRGAAR-IRELFSVA 435 >gi|68074487|ref|XP_679159.1| cell division protein FtsH [Plasmodium berghei strain ANKA] gi|56499835|emb|CAI04925.1| cell division protein FtsH, putative [Plasmodium berghei] Length = 849 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++NR R Q++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 171 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 224 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 225 YVGQGAKRI 233 >gi|207743051|ref|YP_002259443.1| partial clpx protein [Ralstonia solanacearum IPO1609] gi|206594448|emb|CAQ61375.1| probable partial clpx protein [Ralstonia solanacearum IPO1609] Length = 215 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 56/196 (28%) Query: 271 VQRDLLPLVEGS--SVSTKYG---------SINTDHILFIASGAFH-------------- 305 +Q+ LL L+EG+ SV + G ++T +ILFI GAF Sbjct: 1 MQQALLKLIEGTMASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKIIMQRSDKSG 60 Query: 306 -------VSR-------------PADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTD 340 SR P DL+ PE+ GR PV L L+++ IL + Sbjct: 61 IGFGAEVKSREERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDEAALMEILVE 120 Query: 341 TESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDI 400 ++ ++ QY++L+ EG+ L+ ++ A+A A+ + GAR L++++E L D+ Sbjct: 121 PKNAIVKQYQKLLAMEGVELEIRPSALTAIARKAIKRKT-----GARGLRSIVEHALMDV 175 Query: 401 SFSASDLQE-KTVVID 415 + + + + VVID Sbjct: 176 MYDLPNHKGVQKVVID 191 >gi|312375337|gb|EFR22728.1| hypothetical protein AND_14288 [Anopheles darlingi] Length = 699 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 35/53 (66%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ Sbjct: 342 NILMLGPTGSGKTLLAQTIAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLL 394 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVA 374 E GRFPV V SL+ ILT+ + L+ QYK L+ + + L FT++++ +A +A Sbjct: 552 EFVGRFPVLVPFHSLDVDMLVRILTEPRNALVPQYKALLGMDQVELSFTDEALKQIAQLA 611 Query: 375 VNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 + + GAR L+ +ME +L + F K V I E VR Sbjct: 612 MERQT-----GARGLRAIMETLLLEPMFEVPGSDVKGVSITEESVR 652 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVST----------- 286 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ Sbjct: 407 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNSPRKLRG 460 Query: 287 KYGSINTDHILFIASGAF 304 + ++T +ILF+ASGA+ Sbjct: 461 ETVQVDTTNILFVASGAY 478 >gi|115373589|ref|ZP_01460885.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|310825050|ref|YP_003957408.1| ATP-binding protein, clpx family [Stigmatella aurantiaca DW4/3-1] gi|115369431|gb|EAU68370.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Stigmatella aurantiaca DW4/3-1] gi|309398122|gb|ADO75581.1| ATP-binding protein, ClpX family [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 5/109 (4%) Query: 7 FSPREIVSELDRYII-GQQDAKRAVAI-ALRN--RWRRQQLPADLRDELMPKNILLVGPT 62 SP+EI L + GQ++A+RA A+ A R+ R RR L + +N L +GPT Sbjct: 28 LSPKEIDGRLTQLGYRGQEEARRAAAVLAYRHVRRVRRLYLEGIPPEGAARENCLFLGPT 87 Query: 63 GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT + L R + P + + T+F+E GYVG +V ++ L + A Sbjct: 88 GSGKTYLVELLFREILSVPTVMADATQFSETGYVGDDVNTLVSRLYEAA 136 >gi|82594547|ref|XP_725471.1| cell division protein FtsH [Plasmodium yoelii yoelii str. 17XNL] gi|23480490|gb|EAA17036.1| cell division protein ftsh homolog [Plasmodium yoelii yoelii] Length = 867 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++NR R Q++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 183 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 236 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 237 YVGQGAKRI 245 >gi|293332851|ref|NP_001169842.1| hypothetical protein LOC100383734 [Zea mays] gi|224031951|gb|ACN35051.1| unknown [Zea mays] Length = 190 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 14/115 (12%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR P+ V L +LN+ +LT+ +++L QY+++ + L FT+ ++ LA Sbjct: 29 LIPEFIGRLPILVSLAALNEGQLVQVLTEPKNSLSKQYRKMFNLNKVKLHFTDGALRLLA 88 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKT-------VVIDAEYV 419 A+ ++ GAR L+ ++E VL + + D EKT VV+D E + Sbjct: 89 KKAIAKST-----GARGLRAILETVLLEAMYEVPD--EKTGNERVDAVVVDEEAI 136 >gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii] gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii] Length = 494 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL+GP G GKT ++R LA AG PF ++F E+ +VGR + IR+L VA Sbjct: 248 FPKGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAAR-IRELFTVA 304 >gi|195940567|ref|ZP_03085949.1| ATP-dependent protease ATP-binding subunit [Escherichia coli O157:H7 str. EC4024] Length = 211 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 6/105 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F ++++DA+A Sbjct: 87 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 146 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D + +++ + VVID Sbjct: 147 KKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 186 >gi|70948653|ref|XP_743809.1| cell division protein FtsH [Plasmodium chabaudi chabaudi] gi|56523487|emb|CAH79007.1| cell division protein FtsH, putative [Plasmodium chabaudi chabaudi] Length = 850 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++NR R Q++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 171 IKNRERYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 224 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 225 YVGQGAKRI 233 >gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii] gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii] Length = 570 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL+GP G GKT ++R LA AG PF ++F E+ +VGR + IR+L VA Sbjct: 359 FPKGVLLIGPPGTGKTLLARALAGEAGVPFFAASASEFVEM-FVGRGAAR-IRELFTVA 415 >gi|34762745|ref|ZP_00143734.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887595|gb|EAA24675.1| ATP-dependent clp protease ATP-binding subunit clpX [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 119 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR PV L +L++ ILT ++ ++ QY++L K EG+ L+FT++++ +A Sbjct: 5 IIPELVGRLPVITTLDNLDEQTLINILTKPKNAIVKQYQKLCKLEGVELEFTQEALTEIA 64 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ +GAR L+ ++E + DI F Sbjct: 65 KRALKRK-----MGARGLRAIIEHTMLDIMF 90 >gi|330928214|ref|XP_003302171.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1] gi|311322644|gb|EFQ89757.1| hypothetical protein PTT_13894 [Pyrenophora teres f. teres 0-1] Length = 604 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+L++GPTGVGKT + + LA+ G P + T FT+ GY+G +VE + L + Sbjct: 199 NVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 254 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 32/93 (34%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-------------- 289 +GI+ LDE DKI G V EGVQ+ LL ++EG++V + Sbjct: 263 HGIIVLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSANRPGGLSGG 322 Query: 290 ------------------SINTDHILFIASGAF 304 +I TD+ILFI +GAF Sbjct: 323 PLGSPPPPGPGGNKGEVFNIRTDNILFICTGAF 355 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 14/97 (14%) Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ--YKELMKTEGIIL 360 +PADL +PE+ GR P + +L++ +LT+ + +LI Q YK ++ I L Sbjct: 435 QPADLQKFGMIPELIGRIPTVCAVSALDEQALVRVLTEPKDSLIRQEEYKSFLRN--IEL 492 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 FT ++ +A A + + GAR L+ V++++L Sbjct: 493 RFTNGALREIARKASKMGT-----GARGLRHVVDQLL 524 >gi|221061817|ref|XP_002262478.1| cell division protein ftsh [Plasmodium knowlesi strain H] gi|193811628|emb|CAQ42356.1| cell division protein ftsh, putative [Plasmodium knowlesi strain H] Length = 862 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 +RNR + Q++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 172 IRNREKYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 225 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 226 YVGQGAKRI 234 >gi|167948130|ref|ZP_02535204.1| ATP-dependent protease ATP-binding subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 181 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT+ ++ L QY L + EG L+ D++ A+A Sbjct: 56 LIPEFVGRLPVVATLQELDEDSLVKILTEPKNALTKQYGRLFEMEGCELEIRADALRAIA 115 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+T++E+VL D + Sbjct: 116 GKAMERKT-----GARGLRTILEQVLLDTMY 141 >gi|119476202|ref|ZP_01616554.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2143] gi|119450829|gb|EAW32063.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [marine gamma proteobacterium HTCC2143] Length = 154 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L+ ILT+ +++L QY +L + E + +DF ED + A+A Sbjct: 27 LIPEFVGRLPVIATLEELDVDALVSILTEPKNSLTRQYSKLFEMESVEVDFREDGVRAIA 86 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVL 397 + A++ + GAR L++++E VL Sbjct: 87 EKAMHRKT-----GARGLRSILENVL 107 >gi|242016280|ref|XP_002428757.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis] gi|212513442|gb|EEB16019.1| ATP-dependent Clp protease ATP-binding subunit Clpx, putative [Pediculus humanus corporis] Length = 589 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ A Sbjct: 259 NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDA 314 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V SLN+ ILT+ ++ ++ QY+ L + + L F+ +++ +A Sbjct: 464 MIPEFVGRFPVLVAFHSLNEDFLVRILTEPKNAIVPQYQMLFSMDKVDLTFSPEALRGIA 523 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A+ + GAR L+ +ME +L D F Sbjct: 524 RQAMERKT-----GARGLRAIMETLLLDSMF 549 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 24/79 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 324 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPEKNSPRKLRG 377 Query: 291 ----INTDHILFIASGAFH 305 ++T +ILF+ASGA++ Sbjct: 378 ETIQVDTTNILFVASGAYN 396 >gi|325117386|emb|CBZ52938.1| putative cell division protein [Neospora caninum Liverpool] Length = 959 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKTA++R +A AG P+ ++F EI YVG+ + +R L A Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168 Query: 112 N 112 N Sbjct: 169 N 169 >gi|189195398|ref|XP_001934037.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979916|gb|EDU46542.1| ATP-dependent Clp protease ATP-binding subunit clpX [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 606 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 N+L++GPTGVGKT + + LA+ G P + T FT+ GY+G +VE + L + Sbjct: 201 NVLILGPTGVGKTLMCKTLAKTLGLPISISDCTTFTQAGYIGDDVESCVARLFSAS 256 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 32/93 (34%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYG-------------- 289 +GI+ LDE DKI G V EGVQ+ LL ++EG++V + Sbjct: 265 HGIIVLDEIDKIAGSKMSYGKDVGGEGVQQALLKIIEGTTVQVQAKPERSANRPGGLSGG 324 Query: 290 ------------------SINTDHILFIASGAF 304 +I TD+ILFI +GAF Sbjct: 325 PLGSPPPPGPGGNKGEVFNIRTDNILFICTGAF 357 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 14/97 (14%) Query: 308 RPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQ--YKELMKTEGIIL 360 +PADL +PE+ GR P + SL++ +LT+ + +LI Q YK ++ I L Sbjct: 437 QPADLQKFGMIPELIGRIPTVCAVSSLDEHALVRVLTEPKDSLIRQEEYKSFLRN--IEL 494 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 FT ++ +A A + + GAR L+ V++++L Sbjct: 495 RFTNGALREIARKASKMGT-----GARGLRHVVDQLL 526 >gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] Length = 604 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 156 VAGQEEAKENLQEIVDFLNNPAKYKEIGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 210 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 211 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 242 >gi|302418874|ref|XP_003007268.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium albo-atrum VaMs.102] gi|261354870|gb|EEY17298.1| ATP-dependent Clp protease ATP-binding subunit clpX [Verticillium albo-atrum VaMs.102] Length = 583 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 96/267 (35%), Gaps = 106/267 (39%) Query: 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSV------------- 284 I+ EN GIV LDEFDK+ ++ +G VS EGVQ+ LL LVEGS V Sbjct: 263 IKAAEN-GIVVLDEFDKLASKTPAHGRDVSGEGVQQALLKLVEGSRVTLNVKENRSSRST 321 Query: 285 ---STKYG---------------------SINTDHILFIASGAF---------HVSRPA- 310 +T Y +I+T +ILFI GAF VS+P+ Sbjct: 322 PPMTTNYNSGGSSPSSSQSSPPQGKVDQYTIDTSNILFIMCGAFVGLRSIVERRVSKPSM 381 Query: 311 ------------------------DLLPEIQGRFPVRVH--------------------- 325 D LP P H Sbjct: 382 GFGSDLRGRQNLSGDKHDLPKHLFDHLPHTNPDAPASTHTPLDLTTPADLQAFGFIPELI 441 Query: 326 --------LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNL 377 L L D ILT+T +L+ QY L +T L FT ++ A+A A Sbjct: 442 GRVSNICALNPLTLDDLFRILTETRHSLVAQYTALFETYPSRLHFTRKALYAIAAEAAKA 501 Query: 378 NSTVGDIGARRLQTVMERVLEDISFSA 404 + AR L+ MERVL + F A Sbjct: 502 ETG-----ARGLKMEMERVLAEPIFEA 523 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+L++G TG GKT I L++ PF + FT+ GY+G++VE I L+ Sbjct: 204 NLLVMGNTGTGKTYILETLSKKLNVPFTIADCNAFTQAGYIGQDVETCIERLL 256 >gi|237831685|ref|XP_002365140.1| cell division protein, putative [Toxoplasma gondii ME49] gi|211962804|gb|EEA97999.1| cell division protein, putative [Toxoplasma gondii ME49] gi|221506694|gb|EEE32311.1| cell division protein, putative [Toxoplasma gondii VEG] Length = 978 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKTA++R +A AG P+ ++F EI YVG+ + +R L A Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168 Query: 112 N 112 N Sbjct: 169 N 169 >gi|221487011|gb|EEE25257.1| cell division protein, putative [Toxoplasma gondii GT1] Length = 978 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKTA++R +A AG P+ ++F EI YVG+ + +R L A Sbjct: 111 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 168 Query: 112 N 112 N Sbjct: 169 N 169 >gi|312171573|emb|CBX79831.1| ATP-dependent Clp protease ATP-binding subunit clpX [Erwinia amylovora ATCC BAA-2158] Length = 206 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 34/172 (19%) Query: 252 FDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSI-----NTDHILFIASGAF 304 DK+V++ DSG GIG S V+G S G + D I F Sbjct: 36 LDKVVSQRVDSGIGIGFSAS---------VKGKSEKATEGELLAQVEPEDLIKF------ 80 Query: 305 HVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F E Sbjct: 81 ------GLIPEFIGRLPVVATLSELSEEALIQILCEPKNALTKQYQALFNLEGVELEFRE 134 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 +++ A+A+ A+ L T GAR L++++E L D + + + + VVID Sbjct: 135 EALKAIANKAM-LRKT----GARGLRSIVEGALLDTMYDLPSVDDVEKVVID 181 >gi|289616254|emb|CBI57050.1| unnamed protein product [Sordaria macrospora] Length = 647 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 N+LL+GPTGVGKT I L++ PF + FT+ GY+G++VE I L+ Sbjct: 253 NLLLIGPTGVGKTYILETLSKKLNVPFTISDCNSFTQAGYIGQDVEACIERLL 305 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +GIV LDEFDKI R++ NG V EGVQ+ LL LVEG+ V+ Sbjct: 317 HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 358 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++ PADL +PE+ GR L L+ + ILT+ ++L+ QY L +T L Sbjct: 488 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 547 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 FT ++ A+A+ A + GAR L+ MERVL + + A Sbjct: 548 YFTRKALYAIAEKAAK-----NETGARGLKMEMERVLAEPMYDA 586 >gi|157065028|gb|ABV04347.1| membrane protein FtsH1 [Toxoplasma gondii] Length = 1250 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKTA++R +A AG P+ ++F EI YVG+ + +R L A Sbjct: 383 LPKGVLLVGPPGTGKTALARAVATEAGVPYFYASGSEFVEI-YVGQGARR-VRGLFSYAR 440 Query: 112 N 112 N Sbjct: 441 N 441 >gi|321470999|gb|EFX81973.1| hypothetical protein DAPPUDRAFT_302881 [Daphnia pulex] Length = 563 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV-DVAINI 113 NIL++GPTG GKT +++ +A+ PF + T T+ GYVG ++E +I L+ D N+ Sbjct: 221 NILMLGPTGSGKTLLAQTIAQCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 280 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFPV V SL++ ILT+ + L+ Q++ L + + L F+ +++ A++ Sbjct: 425 MIPEFVGRFPVIVPFHSLSQDTLVRILTEPRNALVPQFQMLFGMDKVELTFSPEALRAIS 484 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF--SASDLQEKTVVIDA 416 A+ + GAR L+ +ME +L D F SD+ V DA Sbjct: 485 KQAMEKKT-----GARGLRAIMETLLLDAMFEIPGSDIVSVHVTEDA 526 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 24/78 (30%) Query: 245 GIVFLDEFDKIVA-------RDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS------- 290 GIVFLDE DKI A RD G EGVQ+ +L ++EG+ V+ + Sbjct: 286 GIVFLDEVDKIGAVPGIHQLRDVGG------EGVQQGMLKMLEGTIVNVPERNAPRKLRG 339 Query: 291 ----INTDHILFIASGAF 304 ++T +ILF+ASGA+ Sbjct: 340 ETIQVDTTNILFVASGAY 357 >gi|108758848|ref|YP_628809.1| ATP-binding protein [Myxococcus xanthus DK 1622] gi|108462728|gb|ABF87913.1| ATP-binding protein, ClpX family [Myxococcus xanthus DK 1622] Length = 386 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%) Query: 7 FSPREIVSEL-DRYIIGQQDAKRAVAI-ALRN--RWRRQQLPADLRDELMPKNILLVGPT 62 SPREI L D GQ +A+RA ++ A R+ R R L + M +N L +GPT Sbjct: 34 LSPREIDERLSDLGYRGQTEARRAASVLAYRHLRRIRHLFLEGLAPEPGMRENCLFLGPT 93 Query: 63 GVGKTAISRRLAR-LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT + L R + P + + T+F+E GYVG +V ++ L + A Sbjct: 94 GSGKTFLVELLFREILAVPTVLADATQFSETGYVGDDVSTLLSRLYEAA 142 >gi|156095797|ref|XP_001613933.1| cell division protein FtsH [Plasmodium vivax SaI-1] gi|148802807|gb|EDL44206.1| cell division protein FtsH, putative [Plasmodium vivax] Length = 896 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 +RNR + Q++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 180 IRNREKYQEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 233 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 234 YVGQGAKRI 242 >gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] Length = 635 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L N R +++ A L P+ LLVGP G GKT +++ +A Sbjct: 187 VAGQEEAKESLKEVVDFLENPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 241 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 242 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 273 >gi|1142616|gb|AAA84743.1| ClpX-like protein [Bacillus subtilis subsp. subtilis str. 168] Length = 190 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 62/107 (57%), Gaps = 7/107 (6%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L+ L++ ILT ++ L+ Q+K++++ + + L+F E+++ +A Sbjct: 64 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 123 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFS--ASDLQEKTVVIDA 416 A+ + GAR L++++E ++ D+ F + D EK V+ A Sbjct: 124 KKAIERKT-----GARGLRSIIEGIMLDVMFELPSRDDIEKCVITGA 165 >gi|320333578|ref|YP_004170289.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] gi|319754867|gb|ADV66624.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] Length = 624 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 10/101 (9%) Query: 13 VSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 VS R + G ++AK+ V L+N + Q+ A++ PK +LLVGP G GKT + Sbjct: 163 VSTTFRDVAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLL 217 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +R +A A APF V ++F E+ +VG + +R L D A Sbjct: 218 ARAVAGEADAPFFSVSASEFMEM-FVGVGASR-VRTLFDDA 256 >gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122] gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122] Length = 697 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF+ + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|3413695|gb|AAC31219.1| heat shock protein [Buchnera aphidicola] Length = 72 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 367 IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGD 425 I +A+ A +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV H+ + Sbjct: 1 IRHIAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDE 60 Query: 426 FPSETDMYHFIL 437 D+ FIL Sbjct: 61 LILNNDLNRFIL 72 >gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] Length = 653 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N R QQL A + P+ +LLVGP G GKT +++ +A Sbjct: 180 VAGAEEAKRELTEVVDFLKNPERYQQLGAKI-----PRGVLLVGPPGTGKTLLAKAVAGE 234 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF ++F E+ +VG + +RDL + A Sbjct: 235 AGVPFFSTSASEFVEL-FVGVGASR-VRDLFNQA 266 >gi|8134494|sp|O69227|HSLU_BUCSC RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Length = 72 Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 370 LADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVV-IDAEYVRLHIGDFPS 428 +A+ A +N ++ +IGARRL TV+E ++EDIS+++ + + + V+ ID EYV H+ + Sbjct: 4 IAEAAWKVNESIENIGARRLYTVLEHLMEDISYNSCNNKNELVINIDEEYVSKHLDELIL 63 Query: 429 ETDMYHFIL 437 D+ FIL Sbjct: 64 NNDLNRFIL 72 >gi|302831638|ref|XP_002947384.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f. nagariensis] gi|300267248|gb|EFJ51432.1| hypothetical protein VOLCADRAFT_87717 [Volvox carteri f. nagariensis] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 43 LPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 LPA +R MP +LL GP G GKT +++ +A AG PF V ++F E+ +VGR +I Sbjct: 192 LPAQVR---MPSGVLLCGPPGTGKTLLAKAVAGEAGVPFFAVSASEFVEL-FVGRGAARI 247 >gi|254426145|ref|ZP_05039862.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196188568|gb|EDX83533.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 652 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 15/97 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL Sbjct: 207 IPKGVLLVGPPGTGKTLLARAIAGEAGVPFFSISASEFIEM-FVGVGASR-VRDLF---- 260 Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTR 148 ++ ++QA LDAL GK+ SN R Sbjct: 261 --------EQAKQQAPCIVFIDELDAL-GKSRASNNR 288 >gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21172] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30] gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus 132] gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30] gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus TW20] gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus CGS01] gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA131] gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA177] gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus T0131] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus MW2] gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781] gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763] gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300] gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937] gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus MR1] gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2] gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781] gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763] gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300] gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937] gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus subsp. aureus ST398] gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981] gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus JKD6159] gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH60] gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03] gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00] gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21189] gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21193] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|284161864|ref|YP_003400487.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284011861|gb|ADB57814.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM 5631] Length = 349 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 ++GQ++AK+ V + L+ ++ + PKN+L GP G GKT ++ LA A Sbjct: 104 VVGQEEAKKKVRVILKYLQNPEKF-----GKWAPKNVLFYGPPGTGKTMTAKALANEANV 158 Query: 80 PFIKVEVTKFT--EIGYVGRNVEQIIRDLVDVAINIV 114 PFI V+ TK +G R + ++ VA IV Sbjct: 159 PFISVKSTKLIGEHVGDGARRIHELYERARQVAPCIV 195 >gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 667 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 167 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 223 >gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635] gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED133] gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11] gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46] Length = 697 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 253 >gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group] Length = 577 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL Sbjct: 322 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 374 >gi|218195010|gb|EEC77437.1| hypothetical protein OsI_16238 [Oryza sativa Indica Group] Length = 571 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL Sbjct: 316 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 368 >gi|323310018|gb|EGA63213.1| Mcx1p [Saccharomyces cerevisiae FostersO] Length = 271 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 303 AFHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 A ++ P DL +PE+ GR P+ L+ L + D IL + ++ L+ QY+ + K G Sbjct: 92 ALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLFHILKEPKNALLDQYEYIFKQFG 151 Query: 358 IILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAE 417 + L T+ ++ +A A+ + GAR L+ +MER+L ++++ V+ID Sbjct: 152 VRLCVTQKALKKVAQFALKEGT-----GARGLRGIMERLLLNVNYDCPGSNIAYVLIDEA 206 Query: 418 YV 419 V Sbjct: 207 TV 208 >gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group] Length = 584 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL Sbjct: 329 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 381 >gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2] gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2] Length = 617 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A+ L++ R Q+ A MPK LLVGP G GKT +++ +A Sbjct: 170 VAGQEEAKAALQEMVEFLKSPQRYTQIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 224 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VGR + +RDL A Sbjct: 225 ANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 256 >gi|213852302|ref|ZP_03381834.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 200 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 6/105 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR PV L L++ IL + ++ L QY+ L EG+ L+F +++++A+A Sbjct: 77 LIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRDEALNAIA 136 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 A+ + GAR L++++E L D + +++ + VVID Sbjct: 137 RKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 176 >gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group] Length = 588 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A AG PF V ++F E+ +VGR + +RDL Sbjct: 333 LPRGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEV-FVGRGAAR-VRDL 385 >gi|213419826|ref|ZP_03352892.1| ATP-dependent protease ATP-binding subunit [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 171 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 34/172 (19%) Query: 252 FDKIVAR--DSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRP 309 DK++A ++G+GIG G++V K + +L P Sbjct: 2 LDKVIANRVETGSGIGF--------------GATVKAKSDKASEGELL-------SQVEP 40 Query: 310 ADLL-----PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTE 364 DL+ PE GR PV L L++ IL + ++ L QY+ L EG+ L+F + Sbjct: 41 EDLIKFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALTKQYQALFNLEGVDLEFRD 100 Query: 365 DSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVID 415 ++++A+A A+ + GAR L++++E L D + +++ + VVID Sbjct: 101 EALNAIARKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVID 147 >gi|297599045|ref|NP_001046600.2| Os02g0293500 [Oryza sativa Japonica Group] gi|255670812|dbj|BAF08514.2| Os02g0293500 [Oryza sativa Japonica Group] Length = 189 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GRFP+ V L SL++ +LT ++ L QY +L + + L FTE ++ ++ Sbjct: 27 LIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQYTKLFEMNDVKLHFTEKALRLIS 86 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416 A+ N+ GAR L++++E +L + + +++ IDA Sbjct: 87 KRAIAKNT-----GARGLRSILESLLTESMYEIPEIRTGKDKIDA 126 >gi|330826818|ref|YP_004390121.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] gi|329312190|gb|AEB86605.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] Length = 626 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 207 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 263 >gi|241764607|ref|ZP_04762622.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN] gi|241365928|gb|EER60558.1| ATP-dependent metalloprotease FtsH [Acidovorax delafieldii 2AN] Length = 626 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 204 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 260 >gi|319764601|ref|YP_004128538.1| ATP-dependent metalloprotease ftsh [Alicycliphilus denitrificans BC] gi|317119162|gb|ADV01651.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans BC] Length = 626 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 207 MPKGILLVGPPGTGKTLLARAMAGEAGVPFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 263 >gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818] Length = 864 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 14/99 (14%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK +LL GP G GKT ++ +A PFIKV + IG + EQ IRDL + AI Sbjct: 196 PKGLLLHGPPGCGKTLLASAIAGEWEVPFIKVSAPEL--IGGTSGDSEQFIRDLFEQAIA 253 Query: 113 IVRESRR------DEV------REQASINAEERILDALV 139 I + +R DE+ RE A E RI+ L+ Sbjct: 254 IAQRDKRGCIVFLDEIDTITSKRENAQREMERRIVAQLM 292 >gi|270307761|ref|YP_003329819.1| ATP-dependent metalloprotease, cell division protein [Dehalococcoides sp. VS] gi|270153653|gb|ACZ61491.1| ATP-dependent metalloprotease, cell division protein [Dehalococcoides sp. VS] Length = 499 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++R + Q L A + PK ILL+GP G GKT +++ +A AG PF + ++F E+ Sbjct: 69 LKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM- 122 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 123 FVGVGASR-VRDLFDQA 138 >gi|269837856|ref|YP_003320084.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] gi|310943107|sp|D1C4U5|FTSH3_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|269787119|gb|ACZ39262.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] Length = 489 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP+ +LL GP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 87 MPRGVLLAGPPGTGKTLLARAVAGEAGVPFFAMSASQFVEV-YVGVGAKR-VRDLFAAA 143 >gi|147669015|ref|YP_001213833.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. BAV1] gi|146269963|gb|ABQ16955.1| membrane protease FtsH catalytic subunit [Dehalococcoides sp. BAV1] Length = 604 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK+ V L++R + Q L A + PK ILL+GP G GKT +++ +A Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL D A Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 243 >gi|164427356|ref|XP_956468.2| hypothetical protein NCU03359 [Neurospora crassa OR74A] gi|157071709|gb|EAA27232.2| hypothetical protein NCU03359 [Neurospora crassa OR74A] Length = 828 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 400 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 456 >gi|126668409|ref|ZP_01739366.1| ftsH; cell division protein [Marinobacter sp. ELB17] gi|126627118|gb|EAZ97758.1| ftsH; cell division protein [Marinobacter sp. ELB17] Length = 613 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 188 MPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|289432284|ref|YP_003462157.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT] gi|288946004|gb|ADC73701.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. GT] Length = 604 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK+ V L++R + Q L A + PK ILL+GP G GKT +++ +A Sbjct: 157 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL D A Sbjct: 212 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 243 >gi|57234811|ref|YP_181136.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes 195] gi|57225259|gb|AAW40316.1| ATP-dependent metalloprotease FtsH [Dehalococcoides ethenogenes 195] Length = 608 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK+ V L++R + Q L A + PK ILL+GP G GKT +++ +A Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL D A Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 247 >gi|12082995|gb|AAG48698.1|AF323913_1 intermembrane space AAA protease IAP-1 [Neurospora crassa] gi|12082997|gb|AAG48699.1|AF323914_1 intermembrane space AAA protease IAP-1 [Neurospora crassa] gi|21622385|emb|CAD37039.1| AAA protease IAP-1 (mitochondrial intermembrane space) [Neurospora crassa] Length = 738 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 287 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 343 >gi|226354926|ref|YP_002784666.1| cell division protease FtsH [Deinococcus deserti VCD115] gi|226316916|gb|ACO44912.1| putative cell division protease ftsH; putative membrane protein [Deinococcus deserti VCD115] Length = 622 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + QL A++ PK +LLVGP G GKT ++R +A Sbjct: 171 VAGHEEAKRELIEVVDFLKNPAKYHQLGAEI-----PKGVLLVGPPGTGKTLLARAIAGE 225 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 A PF V ++F E+ +VG Sbjct: 226 ADVPFFSVSASEFMEM-FVG 244 >gi|124267249|ref|YP_001021253.1| vesicle-fusing ATPase [Methylibium petroleiphilum PM1] gi|310943139|sp|A2SHH9|FTSH_METPP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|124260024|gb|ABM95018.1| Vesicle-fusing ATPase [Methylibium petroleiphilum PM1] Length = 617 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LL+GPTG GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 MPKGVLLMGPTGTGKTLLARAVAGEAGVPFFSISGSEFIEM-FVGVGAAR-VRDLFEQA 246 >gi|320594231|gb|EFX06634.1| intermembrane space aaa protease iap-1 [Grosmannia clavigera kw1407] Length = 811 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 378 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFTAA 434 >gi|289616165|emb|CBI56961.1| putative ATP-dependent peptidase [Sordaria macrospora] Length = 846 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 395 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNMSGSEFEEV-YVGVGAKR-VRDLFAAA 451 >gi|73748233|ref|YP_307472.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1] gi|73659949|emb|CAI82556.1| ATP-dependent metalloprotease FtsH [Dehalococcoides sp. CBDB1] Length = 608 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK+ V L++R + Q L A + PK ILL+GP G GKT +++ +A Sbjct: 161 VAGVDEAKQEVGEVVEFLKSREKFQALGARI-----PKGILLIGPPGTGKTLLAKAIAGE 215 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL D A Sbjct: 216 AGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 247 >gi|324537345|gb|ADY49500.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ascaris suum] Length = 129 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 L+PE GR L LN+ D ILT ++ ++ QY++L + + L F ++ A+A Sbjct: 27 LIPEFMGRISNIAPLVPLNEKDMLHILTKPKNAIVKQYEKLFAMDNVELKFEPQALKAMA 86 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA-SDLQEKTVVIDAEY 418 + N +GAR L +++E+ + D+ F D ++VID Y Sbjct: 87 HKTIERN-----VGARGLSSILEKTMNDLMFEVPGDKTVTSIVIDKCY 129 >gi|302382576|ref|YP_003818399.1| ATP-dependent Clp protease ATP-binding subunit clpA [Brevundimonas subvibrioides ATCC 15264] gi|302193204|gb|ADL00776.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Brevundimonas subvibrioides ATCC 15264] Length = 770 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 RE+ ++L+R + GQ A VA A++ A LRD P + L GPTGVGKT Sbjct: 459 RELQTDLNRAVFGQDAAIEQVASAMKLAR------AGLRDPQKPIGSFLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 513 VAKQLASTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 563 >gi|282898112|ref|ZP_06306107.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9] gi|281197256|gb|EFA72157.1| hypothetical protein CRD_02680 [Raphidiopsis brookii D9] Length = 157 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR P+ ++ L++ ILT S L+ QY++L+K + + L+F E+++ A+A Sbjct: 33 MIPEFIGRMPMVAVVEPLDEDALMAILTQPRSALVKQYQKLLKMDNVNLEFKEEALSAIA 92 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 A + GAR L+ ++E ++ D+ + Sbjct: 93 QEAYRRKT-----GARALRGIVEELMLDVMY 118 >gi|298530331|ref|ZP_07017733.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfonatronospira thiodismutans ASO3-1] gi|298509705|gb|EFI33609.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfonatronospira thiodismutans ASO3-1] Length = 743 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDRY----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S +E + LD++ I GQ A +A+ A++ R R A LR+E N LL+GPT Sbjct: 439 SDKEKLFSLDQHLQDAIFGQDKAIQALTRAVK-RSR-----AGLREENKTIGNFLLIGPT 492 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT +SR++A++ G FI+ +++++ E V R Sbjct: 493 GVGKTELSRQMAQVMGVSFIRFDMSEYMEKHAVAR 527 >gi|288931073|ref|YP_003435133.1| ATPase AAA [Ferroglobus placidus DSM 10642] gi|288893321|gb|ADC64858.1| AAA ATPase central domain protein [Ferroglobus placidus DSM 10642] Length = 352 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 13/116 (11%) Query: 6 NFSPREIVSELDRYI-----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 N+S R+IV+E+ + + +GQ++AKR I L ++ + PKN+L G Sbjct: 89 NYS-RDIVTEIVKDVKLDDVVGQEEAKRKARIILEYLKNPEKF-----GKWAPKNVLFYG 142 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114 P G GKT +++ LA A PF+ V+ T+ +G R + ++ +A IV Sbjct: 143 PPGTGKTMMAKALANEAKVPFLSVKSTRLIGEHVGEGARKIHELYERAKQIAPCIV 198 >gi|124806673|ref|XP_001350791.1| cell division protein FtsH, putative [Plasmodium falciparum 3D7] gi|23496919|gb|AAN36471.1|AE014850_36 cell division protein FtsH, putative [Plasmodium falciparum 3D7] Length = 880 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++NR + ++ A MPK +LLVGP G GKT ++R +A A P+I +F EI Sbjct: 168 IKNREKYHEMGA-----RMPKGVLLVGPPGSGKTMLARAVATEANVPYIYTSGPEFIEI- 221 Query: 94 YVGRNVEQI 102 YVG+ ++I Sbjct: 222 YVGQGAKRI 230 >gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] Length = 626 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL A Sbjct: 201 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 257 >gi|94498369|ref|ZP_01304927.1| ATP dependent Clp protease [Sphingomonas sp. SKA58] gi|94422124|gb|EAT07167.1| ATP dependent Clp protease [Sphingomonas sp. SKA58] Length = 776 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 18/109 (16%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++ Sbjct: 459 LTTDLKRVVFGQDKAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVA 512 Query: 71 RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 R+LA L G P + +++++ E GYVG + ++ D VD Sbjct: 513 RQLATLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561 >gi|227872254|ref|ZP_03990614.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268] gi|227841901|gb|EEJ52171.1| M41 family FtsH endopeptidase [Oribacterium sinus F0268] Length = 649 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ YVG + +RDL D A Sbjct: 228 IPKGALLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFVEM-YVGMGAAK-VRDLFDQA 284 >gi|291276742|ref|YP_003516514.1| putative Cell division protein FtsH [Helicobacter mustelae 12198] gi|290963936|emb|CBG39773.1| putative Cell division protein FtsH [Helicobacter mustelae 12198] Length = 511 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP+ +LLVGP GVGKT I++ +A AG PF F +I Y G ++ +R+L VA Sbjct: 159 MPRGVLLVGPPGVGKTLIAKAMAGEAGVPFFYQSSASFVQI-YTGMGAKR-VRELFSVA 215 >gi|160933739|ref|ZP_02081127.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753] gi|156867616|gb|EDO60988.1| hypothetical protein CLOLEP_02600 [Clostridium leptum DSM 753] Length = 660 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%) Query: 28 RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 R + L+N R +L A + PK +LLVGP G GKT ++R +A AG PF + + Sbjct: 192 REIVEFLKNPKRFNELGARI-----PKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGS 246 Query: 88 KFTEIGYVGRNVEQIIRDLVDVA 110 F E+ +VG + +RDL D A Sbjct: 247 DFVEM-FVGVGASR-VRDLFDQA 267 >gi|221135516|ref|ZP_03561819.1| ATP-dependent protease ATP-binding subunit ClpX [Glaciecola sp. HTCC2999] Length = 147 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%) Query: 304 FHVSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGI 358 F P DL +PE GR PV L+ LN+ ILT ++ + QY L E Sbjct: 11 FKAVEPEDLVRYGLIPEFIGRLPVVTSLEELNEEALIQILTQPKNAITKQYGALFALEDT 70 Query: 359 ILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 L+F ED++ A+A A+ + GAR L++++E VL Sbjct: 71 QLEFREDALTAIAKKAMERKT-----GARGLRSIVEAVL 104 >gi|320352510|ref|YP_004193849.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus DSM 2032] gi|320121012|gb|ADW16558.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus DSM 2032] Length = 605 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 246 >gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] Length = 635 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L R +++ A L P+ LLVGP G GKT +++ +A Sbjct: 189 VAGQEEAKESLKEVVDFLEKPQRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 243 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 244 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 275 >gi|168047367|ref|XP_001776142.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672517|gb|EDQ59053.1| predicted protein [Physcomitrella patens subsp. patens] Length = 495 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VGR +I Sbjct: 238 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSASASEFVEM-FVGRGAARI 287 >gi|295397215|ref|ZP_06807315.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] gi|294974538|gb|EFG50265.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] Length = 646 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L+ + Q++ A P+ +LLVGP G GKT +++ +A Sbjct: 210 VAGQDEAKESLVEVVDYLKEPKKYQEIGAQ-----APRGVLLVGPPGTGKTLMAKAVAGE 264 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 265 AGVPFFSIAGSEFVEM-FVGRGAAK-VRDLFKQA 296 >gi|148926085|ref|ZP_01809771.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845564|gb|EDK22656.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8486] Length = 527 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 173 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 229 >gi|84683661|ref|ZP_01011564.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Maritimibacter alkaliphilus HTCC2654] gi|84668404|gb|EAQ14871.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacterales bacterium HTCC2654] Length = 777 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ DA A++ A++ A LRD P N L GPTGVGKT Sbjct: 463 RDLEGSLKRVVFGQDDAITALSSAIKLSR------AGLRDPEKPIGNYLFAGPTGVGKTE 516 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++R+LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 517 VARQLASQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 573 >gi|53804996|ref|YP_113346.1| cell division protein FtsH [Methylococcus capsulatus str. Bath] gi|81682587|sp|Q60AK1|FTSH_METCA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|53758757|gb|AAU93048.1| cell division protein FtsH [Methylococcus capsulatus str. Bath] Length = 637 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 223 MPKGVLLVGPPGTGKTLLARAVAGEAGVPFFNISGSEFIEL-FVGVGAAR-VRDLFEQA 279 >gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] Length = 727 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|210623041|ref|ZP_03293528.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275] gi|210153844|gb|EEA84850.1| hypothetical protein CLOHIR_01478 [Clostridium hiranonis DSM 13275] Length = 627 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKEALTEIVDYLHNPAKYREIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL A Sbjct: 222 AGVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 253 >gi|86150472|ref|ZP_01068697.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596784|ref|ZP_01100021.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218562621|ref|YP_002344400.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839067|gb|EAQ56331.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191625|gb|EAQ95597.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360327|emb|CAL35123.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315928364|gb|EFV07679.1| metalloprotease [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|255539168|ref|XP_002510649.1| Cell division protease ftsH, putative [Ricinus communis] gi|223551350|gb|EEF52836.1| Cell division protease ftsH, putative [Ricinus communis] Length = 692 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL D A Sbjct: 297 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFDKA 353 >gi|116199775|ref|XP_001225699.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51] gi|88179322|gb|EAQ86790.1| hypothetical protein CHGG_08043 [Chaetomium globosum CBS 148.51] Length = 745 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 281 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNTA 337 >gi|315058448|gb|ADT72777.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|284926235|gb|ADC28587.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni IA3902] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] Length = 710 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|298242611|ref|ZP_06966418.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297555665|gb|EFH89529.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 656 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ISR +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 203 IPKGLLLVGPPGTGKTLISRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 259 >gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] Length = 710 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|57237830|ref|YP_179078.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221] gi|57166634|gb|AAW35413.1| cell division protein FtsH, putative [Campylobacter jejuni RM1221] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|283956403|ref|ZP_06373883.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 1336] gi|283792123|gb|EFC30912.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 1336] Length = 536 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 182 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 238 >gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] Length = 685 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|86152943|ref|ZP_01071148.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612530|ref|YP_001000684.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|167005606|ref|ZP_02271364.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81-176] gi|85843828|gb|EAQ61038.1| atpase ec atp-dependent zn proteases [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249291|gb|EAQ72252.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM 10331] gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM 10331] Length = 660 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R QL A + PK ILLVGP G GKT ++R +A AG PF+ V + F E+ Sbjct: 192 LRDPSRFSQLGARI-----PKGILLVGPPGTGKTLLARAVAGEAGVPFMSVSGSDFMEM- 245 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 246 FVGVGAAR-VRDLFQTA 261 >gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] Length = 711 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] Length = 709 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|153952493|ref|YP_001397916.1| putative cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] gi|152939939|gb|ABS44680.1| putative cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU121] Length = 685 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|157415262|ref|YP_001482518.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81116] gi|157386226|gb|ABV52541.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 81116] gi|307747904|gb|ADN91174.1| cell division protein (ftsH) [Campylobacter jejuni subsp. jejuni M1] gi|315932133|gb|EFV11076.1| ATPase family associated with various cellular activities (AAA) family protein [Campylobacter jejuni subsp. jejuni 327] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|86150829|ref|ZP_01069045.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|85841999|gb|EAQ59245.1| cell division protein FtsH, putative [Campylobacter jejuni subsp. jejuni 260.94] Length = 538 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|332707340|ref|ZP_08427390.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332353831|gb|EGJ33321.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 597 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQAK 230 Query: 112 N 112 N Sbjct: 231 N 231 >gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] Length = 711 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2] gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2] Length = 552 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108 MPK +LLVGP GVGKT I++ +A AG PF + F +I YVG + V ++ + + Sbjct: 186 MPKGVLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGSAFVQI-YVGMGAKRVRELFKKAKE 244 Query: 109 VAINIV 114 +A +IV Sbjct: 245 MAPSIV 250 >gi|302419019|ref|XP_003007340.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102] gi|261352991|gb|EEY15419.1| cell division protease ftsH [Verticillium albo-atrum VaMs.102] Length = 718 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 275 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFTSA 331 >gi|169334953|ref|ZP_02862146.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM 17244] gi|169257691|gb|EDS71657.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM 17244] Length = 604 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK A + L N R QQ+ A + PK LLVGP G GKT +++ +A Sbjct: 167 VAGEDEAKEALTEIVDFLHNPGRYQQIGAKI-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 253 >gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis FRI909] Length = 700 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|269928564|ref|YP_003320885.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] gi|310943109|sp|D1C8C0|FTSH4_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 4 gi|269787921|gb|ACZ40063.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] Length = 658 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+++AK ++ LRN + + A L P+ ILLVGP G GKT ++R +A Sbjct: 205 VAGEEEAKAELSEVVDFLRNPMKYHAIGARL-----PRGILLVGPPGTGKTLLARAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL + A Sbjct: 260 AGVPFFSVSASEFVEM-FVGVGASR-VRDLFERA 291 >gi|269926167|ref|YP_003322790.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] gi|269789827|gb|ACZ41968.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 193 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 249 >gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100] gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100] Length = 532 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +LLVGP GVGKT I++ +A AG PF F EI YVG +++ Sbjct: 178 MPKGVLLVGPPGVGKTLIAKAVAGEAGVPFFYQSGASFVEI-YVGMGAKRV 227 >gi|307105269|gb|EFN53519.1| hypothetical protein CHLNCDRAFT_136599 [Chlorella variabilis] Length = 609 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 9/86 (10%) Query: 20 IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G AKR +A L+N + ++ A MP +LL GP G GKT ++R +A Sbjct: 330 VAGMDAAKRELAEVVACLKNSSKFARMGAQ-----MPSGVLLSGPPGTGKTLLARAVAGE 384 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQI 102 AG PF V ++F E+ +VGR +I Sbjct: 385 AGVPFFAVSASEFVEL-FVGRGAARI 409 >gi|205356716|ref|ZP_03223477.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345454|gb|EDZ32096.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni CG8421] Length = 536 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG +++ Sbjct: 182 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 231 >gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A] gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis RP62A] gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU144] gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU028] gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU045] Length = 700 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|296808071|ref|XP_002844374.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS 113480] gi|238843857|gb|EEQ33519.1| intermembrane space AAA protease IAP-1 [Arthroderma otae CBS 113480] Length = 803 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 427 >gi|269836808|ref|YP_003319036.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] gi|310943090|sp|D1C1U7|FTSH1_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|269786071|gb|ACZ38214.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM 20745] Length = 653 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 195 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 251 >gi|307721184|ref|YP_003892324.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294] gi|306979277|gb|ADN09312.1| AAA ATPase central domain protein [Sulfurimonas autotrophica DSM 16294] Length = 551 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +LLVGP GVGKT I++ +A AG PF F +I YVG +++ Sbjct: 185 MPKGVLLVGPPGVGKTMIAKAVAHEAGVPFYYQSGASFVQI-YVGMGAKRV 234 >gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] Length = 695 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AGAPF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|254413594|ref|ZP_05027364.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196179701|gb|EDX74695.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 612 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQAK 246 Query: 112 N 112 N Sbjct: 247 N 247 >gi|294011232|ref|YP_003544692.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium japonicum UT26S] gi|292674562|dbj|BAI96080.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingobium japonicum UT26S] Length = 773 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++R+ Sbjct: 462 TDLKRVVFGQNRAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 515 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA L G P + +++++ E GYVG + ++ D VD Sbjct: 516 LAHLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 562 >gi|218295185|ref|ZP_03496021.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23] gi|218244388|gb|EED10913.1| ATP-dependent metalloprotease FtsH [Thermus aquaticus Y51MC23] Length = 615 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + +L A++ PK +LLVGP G GKT ++R +A Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF V ++F E+ +VG Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240 >gi|291517938|emb|CBK73159.1| ATP-dependent protease Clp, ATPase subunit [Butyrivibrio fibrisolvens 16/4] Length = 214 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 56/196 (28%) Query: 275 LLPLVEGSSVSTKYG-----------SINTDHILFIASGAF-------------HVS--- 307 +L L+EG+ V G +INT +ILFI GAF H S Sbjct: 1 MLKLLEGADVEVPIGASSKNAMVPTTTINTRNILFICGGAFPAMDEIIKARLNKHSSMGF 60 Query: 308 -----------------------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESN 344 R ++PE GR P+ + L++ IL + ++ Sbjct: 61 MADLKDKYDDDKNILQKVTVEDLREFGMIPEFIGRLPIVFATEMLDEDMLVRILKEPKNA 120 Query: 345 LILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS- 403 +I QY++L++ + + L+F E ++ A+A A++ +GAR L++++E + DI + Sbjct: 121 IIKQYQKLLELDEVKLEFEEGALHAIARKALD-----KKLGARGLRSIIEEFMLDIMYEI 175 Query: 404 ASDLQEKTVVIDAEYV 419 D V+I +Y+ Sbjct: 176 PKDDNIGQVIITEDYI 191 >gi|198415852|ref|XP_002129659.1| PREDICTED: similar to ATPase family, AAA domain containing 1 [Ciona intestinalis] Length = 373 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 28/44 (63%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 L PK ILL GP G GKT I++ AR AG FI +EV + T+ Y Sbjct: 135 LPPKGILLYGPPGCGKTMIAKATAREAGCAFINIEVQQLTDKWY 178 >gi|309777529|ref|ZP_07672482.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53] gi|308914704|gb|EFP60491.1| cell division protease FtsH [Erysipelotrichaceae bacterium 3_1_53] Length = 618 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A+ L++ R +++ A MPK LLVGP G GKT +++ +A Sbjct: 171 VAGQEEAKAALQEMVEFLKSPERYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 225 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VGR + +RDL A Sbjct: 226 ANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 257 >gi|221635848|ref|YP_002523724.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] gi|310943102|sp|B9L3S8|FTSH2_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|221157798|gb|ACM06916.1| cell division protein FtsH [Thermomicrobium roseum DSM 5159] Length = 699 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+++AK +A L+N + ++ A L P+ +LLVGP G GKT ++R +A Sbjct: 253 VAGEEEAKAELAQVVDFLKNPAKYHRIGARL-----PRGVLLVGPPGTGKTLLARAVAGE 307 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL + A Sbjct: 308 AGVPFFSVSASEFVEM-FVGVGASR-VRDLFERA 339 >gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] Length = 635 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L R +++ A L P+ LLVGP G GKT +++ +A Sbjct: 187 VAGQEEAKESLKEVVDFLEKPKRYEEIGAKL-----PRGALLVGPPGTGKTLLAKAVAGE 241 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VGR + +RDL A Sbjct: 242 AGVPFFSISGSEFVEM-FVGRGAAK-VRDLFKQA 273 >gi|15827019|ref|NP_301282.1| integral membrane peptidase [Mycobacterium leprae TN] gi|221229497|ref|YP_002502913.1| putative integral membrane peptidase [Mycobacterium leprae Br4923] gi|13092566|emb|CAC29730.1| putative integral membrane peptidase [Mycobacterium leprae] gi|219932604|emb|CAR70315.1| putative integral membrane peptidase [Mycobacterium leprae Br4923] Length = 790 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 239 FVGVGASR-VRDLFDQA 254 >gi|320450983|ref|YP_004203079.1| cell division protein FtsH [Thermus scotoductus SA-01] gi|320151152|gb|ADW22530.1| cell division protein FtsH [Thermus scotoductus SA-01] Length = 617 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + +L A++ PK +LLVGP G GKT ++R +A Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLELGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF V ++F E+ +VG Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240 >gi|71034003|ref|XP_766643.1| cell division protein FtsH [Theileria parva strain Muguga] gi|68353600|gb|EAN34360.1| cell division protein FtsH, putative [Theileria parva] Length = 806 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT +++ +A G PFI +F EI YVG+ ++I Sbjct: 263 VPKGILLVGPPGTGKTMLAKAVATETGIPFIYTSGPEFVEI-YVGQGAQRI 312 >gi|47220509|emb|CAG05535.1| unnamed protein product [Tetraodon nigroviridis] Length = 669 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 14/125 (11%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GR PV V L SL++ ILT+ + ++ QY+ L + L+ E ++ A+A Sbjct: 500 MIPEFVGRLPVVVPLHSLDEDTLVRILTEPRNAVVPQYQALFSMDKCELNVNEAALRAIA 559 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSA--SDLQEKTVVIDA-------EYVRLH 422 +A+ + GAR L+++ME++L + F SD+ V DA YVRL Sbjct: 560 RMALERKT-----GARGLRSIMEKLLLEPMFEVPHSDIVAVEVDKDAVQGKSQPRYVRLD 614 Query: 423 IGDFP 427 + P Sbjct: 615 LRPAP 619 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 17/75 (22%) Query: 245 GIVFLDEFDKIVARDSGNGIG----VSREGVQRDLLPLVEGSSVSTKYGS---------- 290 GIVFLDE DKI S GI V EGVQ+ LL L+EG+ V+ + Sbjct: 354 GIVFLDEVDKI---GSVPGIHQLRDVGGEGVQQGLLKLLEGTVVNVPEKNSRKLRGETVQ 410 Query: 291 INTDHILFIASGAFH 305 ++T +ILF+ASGAF+ Sbjct: 411 VDTTNILFVASGAFN 425 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 33/115 (28%) Query: 55 NILLVGPTG----------------------------VGKTAISRRLARLAGAPFIKVEV 86 NI+L+GPTG GKT +++ LAR PF + Sbjct: 261 NIILLGPTGSGDGGRRPSASACPGGLSLTTPPHPLTVAGKTLLAQTLARCLDVPFAICDC 320 Query: 87 TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR-----DEVREQASINAEERILD 136 T T+ GYVG ++E +I L+ A V ++++ DEV + S+ ++ D Sbjct: 321 TTLTQAGYVGEDIESVIAKLLQDANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRD 375 >gi|14423720|sp|Q9CD58|FTSH_MYCLE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|3097225|emb|CAA18796.1| cell division protein FtsH [Mycobacterium leprae] Length = 787 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPCRYQTLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 236 FVGVGASR-VRDLFDQA 251 >gi|283954556|ref|ZP_06372075.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 414] gi|283793960|gb|EFC32710.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni 414] Length = 538 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L++GP GVGKT I++ +A AG PF + F EI YVG ++ +R+L A Sbjct: 184 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 240 >gi|242091595|ref|XP_002441630.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor] gi|241946915|gb|EES20060.1| hypothetical protein SORBIDRAFT_09g030660 [Sorghum bicolor] Length = 771 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 295 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFNAA 351 >gi|221632324|ref|YP_002521545.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159] gi|310943092|sp|B9KXV3|FTSH1_THERP RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|221157088|gb|ACM06215.1| metalloprotease FtsH [Thermomicrobium roseum DSM 5159] Length = 652 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 195 IPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 251 >gi|57168871|ref|ZP_00368001.1| cell division protein (ftsH) [Campylobacter coli RM2228] gi|305431978|ref|ZP_07401145.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20] gi|57019707|gb|EAL56393.1| cell division protein (ftsH) [Campylobacter coli RM2228] gi|304445062|gb|EFM37708.1| ATP-dependent metalloprotease FtsH [Campylobacter coli JV20] Length = 534 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT I++ +A AG PF + F EI YVG +++ Sbjct: 180 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 229 >gi|294340162|emb|CAZ88534.1| Cell division protease ftsH [Thiomonas sp. 3As] Length = 629 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LLVGP GVGKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 211 PKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 266 >gi|296135939|ref|YP_003643181.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12] gi|295796061|gb|ADG30851.1| ATP-dependent metalloprotease FtsH [Thiomonas intermedia K12] Length = 629 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LLVGP GVGKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 211 PKGVLLVGPPGVGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 266 >gi|206896312|ref|YP_002247246.1| putative cell division protease FtsH [Coprothermobacter proteolyticus DSM 5265] gi|206738929|gb|ACI18007.1| putative cell division protease FtsH [Coprothermobacter proteolyticus DSM 5265] Length = 605 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK+ + L+N + Q + A + PK +LLVGP GVGKT +++ +A Sbjct: 167 VAGSEEAKKDLLEIVDFLKNPKKYQLIGAKI-----PKGVLLVGPPGVGKTLMAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL + A Sbjct: 222 AGVPFFSVSGSEFVEM-FVGVGAAR-VRDLFEQA 253 >gi|84997856|ref|XP_953649.1| metalloprotease/cell division cycle protein (FtsH ) [Theileria annulata] gi|65304646|emb|CAI72971.1| metalloprotease/cell division cycle protein (FtsH homologue), putative [Theileria annulata] Length = 805 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT +++ +A G PFI +F EI YVG+ ++I Sbjct: 263 VPKGILLVGPPGTGKTMLAKAVATETGIPFIYTSGPEFVEI-YVGQGAQRI 312 >gi|328866875|gb|EGG15258.1| Putative FtsH protease [Dictyostelium fasciculatum] Length = 729 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 28/195 (14%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 ++G ++AK + + LRN + + R+ + PK ILLVGP G GKT +++ LA Sbjct: 202 VVGAEEAKSELQDLVDYLRNPGKYAE-----RNIVTPKGILLVGPPGTGKTLLAKALAGE 256 Query: 77 AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV----------RESRRDEVRE 124 A PFI + ++F E IG + V ++ + +A IV S+R Sbjct: 257 ARIPFISINGSEFEEMFIGVGAKRVRELFAEARKMAPCIVFIDEIDSVGGSRSKRINYHP 316 Query: 125 QASINAEERILDALVGKT-----ATSNTREVFRKKL-RDGEISDKEIDIEVAD-TSSDIS 177 ++N LD G+ A +N +E L R G D+ I +++ D ++ I Sbjct: 317 SDALNQLLVELDGFTGREGVIVLAATNFQETLDPALVRSGRF-DRSIQVQLPDYVNTQIL 375 Query: 178 NFDIPGGASVGILNL 192 PG + + NL Sbjct: 376 AQSTPGFSGADLFNL 390 >gi|119194407|ref|XP_001247807.1| hypothetical protein CIMG_01578 [Coccidioides immitis RS] Length = 811 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435 >gi|303311303|ref|XP_003065663.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides posadasii C735 delta SOWgp] gi|240105325|gb|EER23518.1| ATP-dependent metalloprotease FtsH family protein [Coccidioides posadasii C735 delta SOWgp] Length = 811 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435 >gi|309790421|ref|ZP_07684983.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] gi|308227534|gb|EFO81200.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] Length = 642 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 200 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 256 >gi|316935669|ref|YP_004110651.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] gi|315603383|gb|ADU45918.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] Length = 617 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 MPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|312113350|ref|YP_004010946.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC 17100] gi|311218479|gb|ADP69847.1| ATP-dependent metalloprotease FtsH [Rhodomicrobium vannielii ATCC 17100] Length = 626 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G+GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 188 VPKGILLVGPPGIGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|171688928|ref|XP_001909404.1| hypothetical protein [Podospora anserina S mat+] gi|170944426|emb|CAP70537.1| unnamed protein product [Podospora anserina S mat+] Length = 771 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 312 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFNAA 368 >gi|320039500|gb|EFW21434.1| intermembrane space AAA protease IAP-1 [Coccidioides posadasii str. Silveira] Length = 811 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 379 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 435 >gi|258510218|ref|YP_003183652.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476944|gb|ACV57263.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 602 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 18/97 (18%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 +EL+ + +D KR A+ R +PK +LLVGP G GKT ++R + Sbjct: 168 AELEEIVEFLKDPKRFTALGAR----------------IPKGVLLVGPPGTGKTLLARAV 211 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A AG PF + + F E+ +VG + +RDL D A Sbjct: 212 AGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 246 >gi|118463779|ref|YP_879822.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104] gi|118165066|gb|ABK65963.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium 104] Length = 799 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 236 FVGVGASR-VRDLFDQA 251 >gi|41406546|ref|NP_959382.1| hypothetical protein MAP0448 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394895|gb|AAS02765.1| FtsH [Mycobacterium avium subsp. paratuberculosis K-10] Length = 799 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 236 FVGVGASR-VRDLFDQA 251 >gi|302343613|ref|YP_003808142.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] gi|301640226|gb|ADK85548.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] Length = 609 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK +LLVGP G GKT +SR +A AG PF + ++F E+ +VG Sbjct: 185 MPKGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEL-FVG 228 >gi|254773201|ref|ZP_05214717.1| ATP-dependent metallopeptidase HflB [Mycobacterium avium subsp. avium ATCC 25291] Length = 799 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 236 FVGVGASR-VRDLFDQA 251 >gi|163847597|ref|YP_001635641.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus J-10-fl] gi|222525452|ref|YP_002569923.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl] gi|163668886|gb|ABY35252.1| ATP-dependent metalloprotease FtsH [Chloroflexus aurantiacus J-10-fl] gi|222449331|gb|ACM53597.1| ATP-dependent metalloprotease FtsH [Chloroflexus sp. Y-400-fl] Length = 654 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 201 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 257 >gi|326792449|ref|YP_004310270.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] gi|326543213|gb|ADZ85072.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] Length = 655 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N+ R Q+ A + PK +LLVGP G GKT +++ +A AG PF + + F E+ Sbjct: 186 LKNQNRYIQVGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 239 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 240 FVGVGASR-VRDLFEQA 255 >gi|293630868|gb|ACB29725.3| FtsH4 protein [Triticum monococcum subsp. aegilopoides] gi|293630870|gb|ACU00615.2| FtsH4 protein [Triticum monococcum subsp. monococcum] Length = 706 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 252 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 308 >gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 369 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIGQ+DAK+ I ++ Q P +L E PKN+L GP G GKT ++R LA + Sbjct: 124 IIGQEDAKKKCKIIMK----YLQNP-ELFGEWAPKNVLFYGPPGTGKTMMARALATETDS 178 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 179 SFIMVKAPEL--IGEHVGDSA-KMIRELYKKA 207 >gi|307294290|ref|ZP_07574134.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium chlorophenolicum L-1] gi|306880441|gb|EFN11658.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingobium chlorophenolicum L-1] Length = 773 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++R+ Sbjct: 462 TDLKRVVFGQNRAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 515 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA L G P + +++++ E GYVG + ++ D VD Sbjct: 516 LATLLGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 562 >gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens MLS10] gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens MLS10] Length = 681 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I+R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|284049192|ref|YP_003399531.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] gi|283953413|gb|ADB48216.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] Length = 635 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N R + + A +MPK +LLVGP G GKT +++ +A Sbjct: 169 VAGQDEAKEALQEIVNYLHNPARYKAIGA-----VMPKGVLLVGPPGTGKTLLAKAVAGE 223 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 224 AKVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 255 >gi|327401704|ref|YP_004342543.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6] gi|327317212|gb|AEA47828.1| Microtubule-severing ATPase [Archaeoglobus veneficus SNP6] Length = 354 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 ++GQ++AKR V + L ++ + P+N+L GP G GKT ++ LA A Sbjct: 110 VVGQEEAKRKVKVILEFLKNPEKF-----GKWAPRNVLFYGPPGTGKTMTAKALANEAKV 164 Query: 80 PFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114 PF+ V+ TK +G R + ++ VA IV Sbjct: 165 PFLSVKSTKLIGEHVGDGARRIHELYERARQVAPCIV 201 >gi|254457852|ref|ZP_05071279.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD 1] gi|207085245|gb|EDZ62530.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD 1] Length = 547 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 MP+ +LLVGP GVGKT I++ +A AG PF F +I YVG ++ + +L A Sbjct: 181 MPRGVLLVGPPGVGKTMIAKAVAHEAGVPFFYQSGASFVQI-YVGMGAKR-VHELFHAAK 238 Query: 112 N 112 N Sbjct: 239 N 239 >gi|164686639|ref|ZP_02210667.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM 16795] gi|164604368|gb|EDQ97833.1| hypothetical protein CLOBAR_00232 [Clostridium bartlettii DSM 16795] Length = 672 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R +L A + PK IL+VGP G GKT +SR +A AG PF + + F E+ Sbjct: 188 LKNPKRYIELGARI-----PKGILMVGPPGTGKTYLSRAVAGEAGVPFFTISGSDFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGASR-VRDLFEQA 257 >gi|258567738|ref|XP_002584613.1| cell division protein ftsH [Uncinocarpus reesii 1704] gi|237906059|gb|EEP80460.1| cell division protein ftsH [Uncinocarpus reesii 1704] Length = 826 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L + A Sbjct: 394 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKR-VRELFNQA 450 >gi|159472685|ref|XP_001694475.1| predicted protein [Chlamydomonas reinhardtii] gi|158276699|gb|EDP02470.1| predicted protein [Chlamydomonas reinhardtii] Length = 234 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MP +LL GP G GKT +++ +A AG PF V ++F E+ +VGR +I Sbjct: 40 MPSGVLLCGPPGTGKTLLAKAVAGEAGVPFFAVSASEFVEM-FVGRGAARI 89 >gi|78778614|ref|YP_396726.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9312] gi|78712113|gb|ABB49290.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. MIT 9312] Length = 617 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 250 >gi|255550758|ref|XP_002516427.1| Protein YME1, putative [Ricinus communis] gi|223544247|gb|EEF45768.1| Protein YME1, putative [Ricinus communis] Length = 716 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 256 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 312 >gi|219849535|ref|YP_002463968.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM 9485] gi|310943124|sp|B8G4Q6|FTSH_CHLAD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219543794|gb|ACL25532.1| ATP-dependent metalloprotease FtsH [Chloroflexus aggregans DSM 9485] Length = 656 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 201 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 257 >gi|148658441|ref|YP_001278646.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1] gi|148570551|gb|ABQ92696.1| ATP-dependent metalloprotease FtsH [Roseiflexus sp. RS-1] Length = 640 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 196 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252 >gi|315638250|ref|ZP_07893432.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21] gi|315481786|gb|EFU72408.1| cell division protein (ftsH) [Campylobacter upsaliensis JV21] Length = 530 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L++GP GVGKT I++ +A AG PF + F EI YVG +++ Sbjct: 177 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 226 >gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] Length = 648 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 249 >gi|253721988|gb|ACT34058.1| FtsH4 [Aegilops tauschii] Length = 709 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 246 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 302 >gi|15807950|ref|NP_285613.1| cell division protein FtsH [Deinococcus radiodurans R1] gi|6460771|gb|AAF12476.1|AE001863_101 cell division protein FtsH [Deinococcus radiodurans R1] Length = 655 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 9/86 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + Q+ A++ PK +LLVGP G GKT ++R +A Sbjct: 202 VAGHEEAKRELIEVVDFLKNPAKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 256 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQI 102 A PF V ++F E+ +VG ++ Sbjct: 257 ADVPFFSVSASEFMEM-FVGVGASRV 281 >gi|149193778|ref|ZP_01870876.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2] gi|149135731|gb|EDM24209.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2] Length = 493 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP GVGKT I++ LA AG PF + F ++ YVG ++ +RDL A Sbjct: 127 LPKGVLLVGPPGVGKTLIAKALAGEAGVPFFYQSGSSFVQM-YVGVGAKR-VRDLFSKA 183 >gi|78777221|ref|YP_393536.1| peptidase M41 [Sulfurimonas denitrificans DSM 1251] gi|78497761|gb|ABB44301.1| Peptidase M41 [Sulfurimonas denitrificans DSM 1251] Length = 547 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MP+ +LLVGP GVGKT I++ +A AG PF F +I YVG +++ Sbjct: 181 MPRGVLLVGPPGVGKTMIAKAVANAAGVPFYYQSGASFVQI-YVGMGAKRV 230 >gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa] gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa] Length = 723 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 264 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 320 >gi|18401040|ref|NP_565616.1| ftsh4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] gi|75100022|sp|O80983|FTSH4_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 4, mitochondrial; Short=AtFTSH4; Flags: Precursor gi|20197264|gb|AAC31223.2| FtsH protease, putative [Arabidopsis thaliana] gi|330252705|gb|AEC07799.1| cell division protease ftsH-4 [Arabidopsis thaliana] Length = 717 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 315 >gi|257438694|ref|ZP_05614449.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] gi|257198829|gb|EEU97113.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] Length = 688 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT ++R A AG PF + + F E+ YVG + +RDL D A Sbjct: 221 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASR-VRDLFDKA 277 >gi|225016527|ref|ZP_03705719.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum DSM 5476] gi|224950756|gb|EEG31965.1| hypothetical protein CLOSTMETH_00433 [Clostridium methylpentosum DSM 5476] Length = 662 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF + + F E+ YVG + +RDL + A Sbjct: 209 IPKGVLLIGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASR-VRDLFEQA 265 >gi|326475725|gb|EGD99734.1| intermembrane space AAA protease [Trichophyton tonsurans CBS 112818] Length = 802 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 370 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 419 >gi|57242029|ref|ZP_00369969.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195] gi|57017221|gb|EAL54002.1| cell division protein (ftsH) [Campylobacter upsaliensis RM3195] Length = 530 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L++GP GVGKT I++ +A AG PF + F EI YVG +++ Sbjct: 177 MPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI-YVGMGAKRV 226 >gi|297565113|ref|YP_003684085.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] gi|296849562|gb|ADH62577.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] Length = 620 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 10/101 (9%) Query: 13 VSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 VS + + G +AKR V L+N + + A++ PK +LLVGP G GKT + Sbjct: 159 VSTTFKDVAGHTEAKRELMEVVDFLKNPQKYIAIGAEI-----PKGVLLVGPPGTGKTLL 213 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 SR +A AG PF V ++F E+ +VG + +R L + A Sbjct: 214 SRAIAGEAGVPFFSVSASEFMEM-FVGVGASR-VRSLFEEA 252 >gi|156740727|ref|YP_001430856.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM 13941] gi|156232055|gb|ABU56838.1| ATP-dependent metalloprotease FtsH [Roseiflexus castenholzii DSM 13941] Length = 638 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 196 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252 >gi|326499736|dbj|BAJ86179.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 707 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 252 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 308 >gi|218290651|ref|ZP_03494742.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius LAA1] gi|218239316|gb|EED06514.1| ATP-dependent metalloprotease FtsH [Alicyclobacillus acidocaldarius LAA1] Length = 602 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 246 >gi|255947742|ref|XP_002564638.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591655|emb|CAP97894.1| Pc22g06060 [Penicillium chrysogenum Wisconsin 54-1255] Length = 798 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL Sbjct: 364 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 416 >gi|297825729|ref|XP_002880747.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp. lyrata] gi|297326586|gb|EFH57006.1| hypothetical protein ARALYDRAFT_481469 [Arabidopsis lyrata subsp. lyrata] Length = 718 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 315 >gi|302499021|ref|XP_003011507.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371] gi|291175058|gb|EFE30867.1| hypothetical protein ARB_02357 [Arthroderma benhamiae CBS 112371] Length = 718 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 286 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 335 >gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740] gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella succinogenes] Length = 579 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+ L PK +LL+GP GVGKT I++ +A AG PF + F +I Sbjct: 200 LKNPAKYQKFGTKL-----PKGVLLMGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFAQI- 253 Query: 94 YVGRNVEQIIRDL 106 YVG ++ +RDL Sbjct: 254 YVGMGAKR-VRDL 265 >gi|326485351|gb|EGE09361.1| intermembrane space AAA protease IAP-1 [Trichophyton equinum CBS 127.97] Length = 793 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 378 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 427 >gi|302659076|ref|XP_003021233.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517] gi|291185121|gb|EFE40615.1| hypothetical protein TRV_04665 [Trichophyton verrucosum HKI 0517] Length = 717 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 285 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 334 >gi|289422494|ref|ZP_06424337.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius 653-L] gi|289157066|gb|EFD05688.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus anaerobius 653-L] Length = 625 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +SR +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGILMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|242769231|ref|XP_002341728.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC 10500] gi|218724924|gb|EED24341.1| intermembrane space AAA protease IAP-1 [Talaromyces stipitatus ATCC 10500] Length = 807 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL Sbjct: 372 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 424 >gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis] Length = 705 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F EI +VG+ + +RDL A Sbjct: 323 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAAGPEFDEI-FVGQGARR-VRDLFKAA 379 >gi|53804153|ref|YP_114227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus capsulatus str. Bath] gi|53757914|gb|AAU92205.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus capsulatus str. Bath] Length = 756 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ S L + GQ +A A++ A++ A LRD P + L GPTGVGKT Sbjct: 452 RDLESNLKMLVFGQDEAIAALSSAIKLSR------AGLRDGQKPIGSFLFAGPTGVGKTE 505 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LAR+ G I+ +++++ E V R Sbjct: 506 VTRQLARMLGVELIRFDMSEYMERHTVSR 534 >gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog [Acyrthosiphon pisum] Length = 710 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F EI VG+ + IRDL A Sbjct: 306 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGSEFDEI-LVGQGARR-IRDLFKAA 362 >gi|255316772|gb|ACU01771.1| protease FtsH-like protein 4 [Brachypodium distachyon] Length = 589 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 129 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 185 >gi|147676533|ref|YP_001210748.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI] gi|146272630|dbj|BAF58379.1| ATP-dependent Zn proteases [Pelotomaculum thermopropionicum SI] Length = 609 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 177 LKNPKKFQELGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 231 FVGVGASR-VRDLFDQA 246 >gi|309799589|ref|ZP_07693815.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus infantis SK1302] gi|308116777|gb|EFO54227.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Streptococcus infantis SK1302] Length = 128 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 6/109 (5%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE+ GR PV L+ L D IL + + L+ QY+ L+ + + L+F ++++ +A Sbjct: 14 IIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIA 73 Query: 372 DVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 + A+ + GAR L++++E + D+ F + KTV I E V Sbjct: 74 NKAIERKT-----GARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAV 117 >gi|302390612|ref|YP_003826433.1| membrane protease FtsH catalytic subunit [Thermosediminibacter oceani DSM 16646] gi|302201240|gb|ADL08810.1| membrane protease FtsH catalytic subunit [Thermosediminibacter oceani DSM 16646] Length = 599 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 245 >gi|166032913|ref|ZP_02235742.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC 27755] gi|166027270|gb|EDR46027.1| hypothetical protein DORFOR_02634 [Dorea formicigenerans ATCC 27755] Length = 441 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 13/78 (16%) Query: 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 ++P+ I LD + Q++AK+A AI L N + ++ +N++L GPTG GK Sbjct: 131 WTPQMIYEYLDENVYRQENAKKAAAIMLYNHLKGRR-----------RNMILAGPTGCGK 179 Query: 67 TAISRRLARLAGAPFIKV 84 T I R L + PFIK+ Sbjct: 180 TEIWRSLQKR--FPFIKI 195 >gi|327295456|ref|XP_003232423.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892] gi|326465595|gb|EGD91048.1| intermembrane space AAA protease [Trichophyton rubrum CBS 118892] Length = 806 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 374 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 423 >gi|118593590|ref|ZP_01550967.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614] gi|118433808|gb|EAV40468.1| ATP-dependent metalloprotease FtsH [Stappia aggregata IAM 12614] Length = 608 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|11498884|ref|NP_070113.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] gi|2649294|gb|AAB89960.1| cell division control protein, AAA family, putative [Archaeoglobus fulgidus DSM 4304] Length = 352 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Query: 9 PREIVSELDRYI-----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 PR I +E+ R I +GQ++AKR + L ++ + PKN+L GP G Sbjct: 91 PRVIETEIVRDITLDDVVGQEEAKRKAKVILEYLRNPEKF-----GKWAPKNVLFYGPPG 145 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKF--TEIGYVGRNVEQIIRDLVDVAINIV 114 GKT +++ L+ A PF+ V+ TK +G R V ++ +A IV Sbjct: 146 TGKTMMAKALSNEAKTPFLSVKSTKLIGEHVGDGARRVHELYERARQLAPCIV 198 >gi|323451269|gb|EGB07147.1| hypothetical protein AURANDRAFT_12251 [Aureococcus anophagefferens] Length = 313 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + G QDAKR++ + +R +L LR +PK +LL GP G GKT I R +A +GA Sbjct: 32 VAGLQDAKRSIMEMVIWPMQRPELFTGLR--AVPKGMLLFGPPGTGKTLIGRAIASSSGA 89 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + ++G + E+++R + VA Sbjct: 90 TFFSISASSLMS-KWIGES-EKLVRTMFAVA 118 >gi|291296855|ref|YP_003508253.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] gi|290471814|gb|ADD29233.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] Length = 622 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V ++F E+ +VG + +R L D A Sbjct: 198 IPKGVLLVGPPGTGKTLLTRAVAGEAGVPFFSVSASEFMEM-FVGVGASR-VRTLFDEA 254 >gi|224372903|ref|YP_002607275.1| ATPase Zn protease [Nautilia profundicola AmH] gi|223589089|gb|ACM92825.1| ATPase EC ATP-dependent Zn protease [Nautilia profundicola AmH] Length = 494 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP GVGKT I++ LA AG PF + F ++ YVG ++ +RDL Sbjct: 128 LPKGVLLVGPPGVGKTLIAKALAGEAGVPFFYQSGSSFVQM-YVGVGAKR-VRDL 180 >gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1] Length = 790 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKT ++R +A AG PF + ++F EI +VG ++ +R+L A Sbjct: 339 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFTAAK 396 Query: 112 N 112 N Sbjct: 397 N 397 >gi|313113476|ref|ZP_07799065.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf. prausnitzii KLE1255] gi|310624203|gb|EFQ07569.1| ATP-dependent metallopeptidase HflB [Faecalibacterium cf. prausnitzii KLE1255] Length = 723 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT ++R A AG PF + + F E+ YVG + +RDL D A Sbjct: 246 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSISGSDFVEM-YVGVGASR-VRDLFDKA 302 >gi|315042828|ref|XP_003170790.1| cell division protease ftsH [Arthroderma gypseum CBS 118893] gi|311344579|gb|EFR03782.1| cell division protease ftsH [Arthroderma gypseum CBS 118893] Length = 805 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A AG PF + ++F EI YVG +++ Sbjct: 373 LPKGILLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-YVGVGAKRV 422 >gi|212542291|ref|XP_002151300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC 18224] gi|210066207|gb|EEA20300.1| intermembrane space AAA protease IAP-1 [Penicillium marneffei ATCC 18224] Length = 788 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL Sbjct: 353 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDL 405 >gi|148258950|ref|YP_001243535.1| cell division protein [Bradyrhizobium sp. BTAi1] gi|146411123|gb|ABQ39629.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 630 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF+ + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTMLARAIAGEAGVPFLSINGSEFVEM-FVGVGAAR-VRDLFEQA 250 >gi|47969542|emb|CAG25608.1| ftsH-like protease [Pisum sativum] Length = 706 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 258 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFTAA 314 >gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172] gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172] Length = 680 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK ++A L N + +++ A + PK ILLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKESLAEIVDFLHNPGKYKEIGARV-----PKGILLVGPPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 AKVPFFTISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|254502137|ref|ZP_05114288.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii DFL-11] gi|222438208|gb|EEE44887.1| ATP-dependent metallopeptidase HflB subfamily [Labrenzia alexandrii DFL-11] Length = 608 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|255655844|ref|ZP_05401253.1| cell division protein [Clostridium difficile QCD-23m63] gi|296450877|ref|ZP_06892626.1| cell division protein FtsH [Clostridium difficile NAP08] gi|296879122|ref|ZP_06903117.1| cell division protein FtsH [Clostridium difficile NAP07] gi|296260249|gb|EFH07095.1| cell division protein FtsH [Clostridium difficile NAP08] gi|296429665|gb|EFH15517.1| cell division protein FtsH [Clostridium difficile NAP07] Length = 605 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A++ L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 166 VAGQDEAKEALSEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 220 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + IRDL A Sbjct: 221 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 252 >gi|94986281|ref|YP_605645.1| ATP-dependent metalloprotease FtsH [Deinococcus geothermalis DSM 11300] gi|94556562|gb|ABF46476.1| membrane protease FtsH catalytic subunit [Deinococcus geothermalis DSM 11300] Length = 621 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + Q+ A++ PK +LLVGP G GKT ++R +A Sbjct: 168 VAGHEEAKRELIEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 222 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 A PF V ++F E+ +VG Sbjct: 223 ADVPFFSVSASEFMEM-FVG 241 >gi|310794449|gb|EFQ29910.1| ATP-dependent metallopeptidase HflB [Glomerella graminicola M1.001] Length = 763 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A AG PF + ++F E+ YVG ++ +RDL A Sbjct: 303 LPKGILMVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRDLFASA 359 >gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 618 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829] gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829] gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829] Length = 635 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 25/103 (24%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 S REIVS LD + K+ AI R PK LLVGP G GKT Sbjct: 195 SLREIVSFLD-------NPKKYAAIGAR----------------CPKGALLVGPPGTGKT 231 Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++R +A A PF ++ ++F E+ +VGR + +RDL A Sbjct: 232 LLARAVAGEAKVPFFQISGSEFVEM-FVGRGAAK-VRDLFKQA 272 >gi|46198343|ref|YP_004010.1| cell division protein ftsH [Thermus thermophilus HB27] gi|46195965|gb|AAS80383.1| cell division protein ftsH [Thermus thermophilus HB27] Length = 618 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + ++ A++ PK +LLVGP G GKT ++R +A Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF V ++F E+ +VG Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240 >gi|67538836|ref|XP_663192.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4] gi|40743041|gb|EAA62231.1| hypothetical protein AN5588.2 [Aspergillus nidulans FGSC A4] Length = 802 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 365 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 421 >gi|312898314|ref|ZP_07757704.1| negative regulator of genetic competence ClpC/MecB [Megasphaera micronuciformis F0359] gi|310620233|gb|EFQ03803.1| negative regulator of genetic competence ClpC/MecB [Megasphaera micronuciformis F0359] Length = 809 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 14/91 (15%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A RAVA A+R A L+D P + L +GP+GVGKT ++R L Sbjct: 501 ELHKRVIGQDEAVRAVAKAMRRSG------AGLKDPKRPVGSFLFLGPSGVGKTELARAL 554 Query: 74 ARLAG-----APFIKVEVTKFTEIGYVGRNV 99 A AG I++++++FTE V R V Sbjct: 555 A--AGLFGDEEAMIRIDMSEFTESHAVARLV 583 >gi|253701843|ref|YP_003023032.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] gi|251776693|gb|ACT19274.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] Length = 616 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK R V L+ + QQ+ + PK +LLVGP G GKT ++R +A Sbjct: 177 VAGMEEAKQELREVVDYLKEPKKFQQIGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RDL A Sbjct: 232 AGVPFFSISASAFIEM-FVGVGASR-VRDLFATA 263 >gi|55980372|ref|YP_143669.1| cell division protein FtsH [Thermus thermophilus HB8] gi|55771785|dbj|BAD70226.1| cell division protein FtsH [Thermus thermophilus HB8] Length = 618 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AKR V L+N + ++ A++ PK +LLVGP G GKT ++R +A Sbjct: 167 VAGHEEAKRELMEVVDFLKNPKKYLEIGAEI-----PKGVLLVGPPGTGKTLLARAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF V ++F E+ +VG Sbjct: 222 AGVPFFSVSASEFMEM-FVG 240 >gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus] Length = 753 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V +F EI VG+ + +RDL A Sbjct: 332 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 388 >gi|119476067|ref|ZP_01616419.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143] gi|119450694|gb|EAW31928.1| Peptidase M41, FtsH [marine gamma proteobacterium HTCC2143] Length = 641 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 44 PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 PA R+ MPK IL++GP G GKT ++R A AG PF V ++F E+ +VG + Sbjct: 218 PAHYRELGAKMPKGILMMGPPGCGKTLLARATAGEAGVPFFSVSGSEFIEM-FVGVGASR 276 Query: 102 IIRDLVDVA 110 +RD+ + A Sbjct: 277 -VRDMFNNA 284 >gi|148256655|ref|YP_001241240.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1] gi|146408828|gb|ABQ37334.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 615 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247 >gi|325283722|ref|YP_004256263.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] gi|324315531|gb|ADY26646.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] Length = 634 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK+ V L+N + Q+ A++ PK +LLVGP G GKT ++R +A Sbjct: 170 VAGHEEAKKELVEVVDFLKNPGKYHQIGAEI-----PKGVLLVGPPGTGKTLLARAIAGE 224 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 A PF V ++F E+ +VG Sbjct: 225 ADVPFFSVSASEFMEM-FVG 243 >gi|71028972|ref|XP_764129.1| hypothetical protein [Theileria parva strain Muguga] gi|68351083|gb|EAN31846.1| hypothetical protein, conserved [Theileria parva] Length = 680 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK ILL G G GKT I+R LA AG PFI ++F E+ +VG + IRDL A Sbjct: 241 LPKGILLAGSPGTGKTLIARALASEAGVPFIHASGSEFEEM-FVGVGARR-IRDLFKTAK 298 Query: 112 NI 113 +I Sbjct: 299 SI 300 >gi|226290113|gb|EEH45597.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis Pb18] Length = 813 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 433 >gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] Length = 646 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK +V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 198 VAGQEEAKESVKEIVDFLHNPAKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 252 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 AG PF + + F E+ +VG + +RDL AI Sbjct: 253 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQAI 285 >gi|259484950|tpe|CBF81608.1| TPA: intermembrane space AAA protease IAP-1 (AFU_orthologue; AFUA_4G11530) [Aspergillus nidulans FGSC A4] Length = 784 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 347 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 403 >gi|295401966|ref|ZP_06811928.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius C56-YS93] gi|312109217|ref|YP_003987533.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1] gi|294975968|gb|EFG51584.1| ATP-dependent metalloprotease FtsH [Geobacillus thermoglucosidasius C56-YS93] gi|311214318|gb|ADP72922.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y4.1MC1] Length = 634 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|119493542|ref|ZP_01624207.1| cell division protein; FtsH [Lyngbya sp. PCC 8106] gi|119452596|gb|EAW33778.1| cell division protein; FtsH [Lyngbya sp. PCC 8106] Length = 615 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253 >gi|146339824|ref|YP_001204872.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278] gi|146192630|emb|CAL76635.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) [Bradyrhizobium sp. ORS278] Length = 615 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247 >gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469] gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469] Length = 644 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+ LLVGP G GKT I++ +A AG PF ++ ++F E+ +VGR + +RDL A Sbjct: 216 CPRGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAK-VRDLFKQA 272 >gi|255306855|ref|ZP_05351026.1| cell division protein [Clostridium difficile ATCC 43255] Length = 583 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 144 VAGQDEAKEALTEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 198 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + IRDL A Sbjct: 199 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 230 >gi|218188506|gb|EEC70933.1| hypothetical protein OsI_02523 [Oryza sativa Indica Group] Length = 702 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 249 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 305 >gi|295669392|ref|XP_002795244.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis Pb01] gi|226285178|gb|EEH40744.1| proteasome-activating nucleotidase [Paracoccidioides brasiliensis Pb01] Length = 813 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 433 >gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] Length = 632 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980] gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980 UF-70] Length = 774 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L A Sbjct: 329 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFTAA 385 >gi|126699436|ref|YP_001088333.1| cell division protein [Clostridium difficile 630] gi|254975463|ref|ZP_05271935.1| cell division protein [Clostridium difficile QCD-66c26] gi|255092850|ref|ZP_05322328.1| cell division protein [Clostridium difficile CIP 107932] gi|255101000|ref|ZP_05329977.1| cell division protein [Clostridium difficile QCD-63q42] gi|255314593|ref|ZP_05356176.1| cell division protein [Clostridium difficile QCD-76w55] gi|255517267|ref|ZP_05384943.1| cell division protein [Clostridium difficile QCD-97b34] gi|255650373|ref|ZP_05397275.1| cell division protein [Clostridium difficile QCD-37x79] gi|260683487|ref|YP_003214772.1| cell division protein [Clostridium difficile CD196] gi|260687083|ref|YP_003218216.1| cell division protein [Clostridium difficile R20291] gi|306520332|ref|ZP_07406679.1| cell division protein [Clostridium difficile QCD-32g58] gi|115250873|emb|CAJ68698.1| Cell division protease FtsH1 [Clostridium difficile] gi|260209650|emb|CBA63344.1| cell division protein [Clostridium difficile CD196] gi|260213099|emb|CBE04494.1| cell division protein [Clostridium difficile R20291] Length = 605 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 166 VAGQDEAKEALTEIVDFLHNPEKYKKIGAQ-----MPKGALLVGPPGTGKTLLAKAVAGE 220 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + IRDL A Sbjct: 221 ANVPFFSISGSEFVEM-FVGMGASR-IRDLFKQA 252 >gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays] gi|223947901|gb|ACN28034.1| unknown [Zea mays] Length = 710 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 255 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311 >gi|182678216|ref|YP_001832362.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] gi|182634099|gb|ACB94873.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250 >gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|84996863|ref|XP_953153.1| metallopeptidase [Theileria annulata strain Ankara] gi|65304149|emb|CAI76528.1| metallopeptidase, putative [Theileria annulata] Length = 691 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK ILL G G GKT I+R LA AG PFI ++F E+ +VG + IRDL A Sbjct: 241 LPKGILLAGSPGTGKTLIARALASEAGVPFIHASGSEFEEM-FVGVGARR-IRDLFTTAK 298 Query: 112 NI 113 +I Sbjct: 299 SI 300 >gi|296422010|ref|XP_002840556.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636774|emb|CAZ84747.1| unnamed protein product [Tuber melanosporum] Length = 406 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 12/111 (10%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN-----VEQIIRDLV 107 PK +LL GP G GKT +++ LAR +GA FI + ++ TE Y N V + R L Sbjct: 133 PKGVLLYGPPGCGKTMLAKALARESGACFINLHISTLTEKWYGDSNKLVSAVFTLARKLQ 192 Query: 108 DV-----AINIVRESRRDEVREQASINAEERI--LDALVGKTATSNTREVF 151 I+ V SR E +++ E + D L+ +AT N ++ Sbjct: 193 PTIVFIDEIDAVLRSRSSSDHEASTMVKAEFMTHWDGLLSSSATGNASQIL 243 >gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus kaustophilus HTA426] gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III heat-shock) [Geobacillus kaustophilus HTA426] Length = 632 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus thermodenitrificans NG80-2] gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III heat-shock) [Geobacillus thermodenitrificans NG80-2] gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] Length = 631 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|30248910|ref|NP_840980.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718] gi|30138527|emb|CAD84817.1| ftsH; cell division protein [Nitrosomonas europaea ATCC 19718] Length = 619 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 196 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 251 >gi|114331375|ref|YP_747597.1| ATP-dependent metalloprotease FtsH [Nitrosomonas eutropha C91] gi|114308389|gb|ABI59632.1| membrane protease FtsH catalytic subunit [Nitrosomonas eutropha C91] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 196 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 251 >gi|166031091|ref|ZP_02233920.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC 27755] gi|166028938|gb|EDR47695.1| hypothetical protein DORFOR_00776 [Dorea formicigenerans ATCC 27755] Length = 607 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKR---AVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + L N R +++ A MPK ILLVGP G GKT +++ +A Sbjct: 169 RDVAGEDEAKENLSEIVEYLHNPARYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVA 223 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 224 GEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFQQA 257 >gi|197117402|ref|YP_002137829.1| cell division ATP-dependent zinc protease FtsH [Geobacter bemidjiensis Bem] gi|197086762|gb|ACH38033.1| cell division ATP-dependent zinc protease FtsH [Geobacter bemidjiensis Bem] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK R V L+ + QQ+ + PK +LLVGP G GKT ++R +A Sbjct: 177 VAGMEEAKQELREVVEYLKEPKKFQQVGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RDL A Sbjct: 232 AGVPFFSISASAFIEM-FVGVGASR-VRDLFATA 263 >gi|28209972|ref|NP_780916.1| cell division protein ftsH [Clostridium tetani E88] gi|28202407|gb|AAO34853.1| cell division protein ftsH [Clostridium tetani E88] Length = 603 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 249 >gi|115437804|ref|NP_001043385.1| Os01g0574500 [Oryza sativa Japonica Group] gi|75330321|sp|Q8LQJ8|FTSH5_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 5, mitochondrial; Short=OsFTSH5; Flags: Precursor gi|20521392|dbj|BAB91903.1| cell division protein ftsH (ftsH)-like [Oryza sativa Japonica Group] gi|113532916|dbj|BAF05299.1| Os01g0574500 [Oryza sativa Japonica Group] gi|125570901|gb|EAZ12416.1| hypothetical protein OsJ_02306 [Oryza sativa Japonica Group] Length = 715 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 262 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 318 >gi|328949928|ref|YP_004367263.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] gi|328450252|gb|AEB11153.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] Length = 621 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V ++F E+ +VG + +R L D A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFMEM-FVGVGASR-VRTLFDEA 253 >gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|212637911|ref|YP_002314431.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1] gi|212559391|gb|ACJ32446.1| ATP-dependent Zn protease FtsH [Anoxybacillus flavithermus WK1] Length = 627 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|115391201|ref|XP_001213105.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624] gi|114194029|gb|EAU35729.1| hypothetical protein ATEG_03927 [Aspergillus terreus NIH2624] Length = 824 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 389 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 445 >gi|17228756|ref|NP_485304.1| cell division protein [Nostoc sp. PCC 7120] gi|17130608|dbj|BAB73218.1| cell division protein [Nostoc sp. PCC 7120] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|327353808|gb|EGE82665.1| cell division protease ftsH [Ajellomyces dermatitidis ATCC 18188] Length = 804 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 372 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 428 >gi|312281735|dbj|BAJ33733.1| unnamed protein product [Thellungiella halophila] Length = 717 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 259 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 315 >gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10] gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10] Length = 551 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI YVG ++ +R+L A Sbjct: 329 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEI-YVGVGAKR-VRELFTAA 385 >gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 615 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 199 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 255 >gi|17865463|sp|Q9BAE0|FTSH_MEDSA RecName: Full=ATP-dependent zinc metalloprotease FTSH, chloroplastic; Flags: Precursor gi|13183728|gb|AAK15322.1|AF332134_1 FtsH protease [Medicago sativa] Length = 706 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 285 IPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 341 >gi|261191725|ref|XP_002622270.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis SLH14081] gi|239589586|gb|EEQ72229.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis SLH14081] gi|239608671|gb|EEQ85658.1| intermembrane space AAA protease IAP-1 [Ajellomyces dermatitidis ER-3] Length = 807 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 375 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 431 >gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|114568747|ref|YP_755427.1| ATP-dependent metalloprotease FtsH [Maricaulis maris MCS10] gi|114339209|gb|ABI64489.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10] Length = 607 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 190 MPKGILLVGPPGTGKTLFARAMAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEKA 246 >gi|254560086|ref|YP_003067181.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens DM4] gi|254267364|emb|CAX23199.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens DM4] Length = 620 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 196 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252 >gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] Length = 710 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 255 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311 >gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] Length = 635 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 250 >gi|75906798|ref|YP_321094.1| FtsH peptidase [Anabaena variabilis ATCC 29413] gi|75700523|gb|ABA20199.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|32266378|ref|NP_860410.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC 51449] gi|32262428|gb|AAP77476.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC 51449] Length = 562 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ +A AG PF + F +I YVG +++ Sbjct: 195 LPKGVLLVGPPGVGKTMIAKAVAGEAGVPFFYQSGSSFVQI-YVGMGAKRV 244 >gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis OL] gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis OL] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] Length = 646 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 202 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGIGASR-VRDLFDQA 258 >gi|186684974|ref|YP_001868170.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186467426|gb|ACC83227.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor obsidiansis OB47] gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor obsidiansis OB47] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|225181447|ref|ZP_03734890.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT 1] gi|225167845|gb|EEG76653.1| ATP-dependent metalloprotease FtsH [Dethiobacter alkaliphilus AHT 1] Length = 652 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I+R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 185 IPKGVLLVGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 241 >gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 646 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 202 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGIGASR-VRDLFDQA 258 >gi|119510170|ref|ZP_01629309.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119465231|gb|EAW46129.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 291 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 9/78 (11%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 208 IPKGVLLVGPPGTGKTMLAKAVAGEAGVPFFSISGSEFIEL-FVGVGASR-VRDLFDQAK 265 Query: 111 ------INIVRESRRDEV 122 + I R++RR + Sbjct: 266 QQAPCIVFIDRKTRRKPL 283 >gi|32473777|ref|NP_866771.1| cell division protein FtsH [Rhodopirellula baltica SH 1] gi|81661369|sp|Q7URM7|FTSH2_RHOBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|32444313|emb|CAD74311.1| cell division protein FtsH [Rhodopirellula baltica SH 1] Length = 728 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 25 DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 D R V L+N + Q L + PK +LLVGP G GKT +++ +A AG PF + Sbjct: 261 DEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 315 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 + F E+ +VG + +RD+ A+N Sbjct: 316 SGSDFVEM-FVGVGAAR-VRDMFTQAVN 341 >gi|319938337|ref|ZP_08012733.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1] gi|319806520|gb|EFW03182.1| hypothetical protein HMPREF9488_03569 [Coprobacillus sp. 29_1] Length = 574 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 10/99 (10%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRN--RWRRQQLPADLRDELMPKNILL 58 M LT +FS + + ++ + IIGQ A + +L + ++ Q P+ + LL Sbjct: 317 MSLTTSFSYQNLEEQMKQEIIGQDKAIHTIVESLESLSQYPHPQKPSGI--------YLL 368 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 VG +G+GKT ++ LA+L F+K+++++++E V + Sbjct: 369 VGGSGIGKTQTAKSLAKLLNRNFVKLDMSEYSEPSSVSK 407 >gi|119512548|ref|ZP_01631626.1| cell division protein [Nodularia spumigena CCY9414] gi|119462809|gb|EAW43768.1| cell division protein [Nodularia spumigena CCY9414] Length = 612 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|30526336|gb|AAP32310.1| putative FtsH protease [Solanum lycopersicum] Length = 714 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 257 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 313 >gi|327537415|gb|EGF24144.1| cell division protein FtsH [Rhodopirellula baltica WH47] Length = 728 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 25 DAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 D R V L+N + Q L + PK +LLVGP G GKT +++ +A AG PF + Sbjct: 261 DEVREVVDFLKNSEKYQSLGGRI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 315 Query: 85 EVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 + F E+ +VG + +RD+ A+N Sbjct: 316 SGSDFVEM-FVGVGAAR-VRDMFTQAVN 341 >gi|225682684|gb|EEH20968.1| cell division protease ftsH [Paracoccidioides brasiliensis Pb03] Length = 541 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 105 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 161 >gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626] gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626] Length = 631 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+ LLVGP G GKT I++ +A AG PF ++ ++F E+ +VGR + +RDL A Sbjct: 206 PRGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEM-FVGRGAAK-VRDLFKQA 261 >gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM 6725] gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM 6725] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|86157216|ref|YP_464001.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773727|gb|ABC80564.1| AAA ATPase [Anaeromyxobacter dehalogenans 2CP-C] Length = 760 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 R +V EL + I GQ A A+A A++ R L + E + L GPTGVGKT + Sbjct: 451 RSLVPELRKVIYGQDQAIEAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGR 97 +++LAR+ G F++ ++T++ E V R Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533 >gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor kristjanssonii 177R1B] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|125526519|gb|EAY74633.1| hypothetical protein OsI_02522 [Oryza sativa Indica Group] Length = 709 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 255 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311 >gi|2077957|emb|CAA73318.1| ATPase [Arabidopsis thaliana] Length = 634 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 226 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 282 >gi|298489876|ref|YP_003720053.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298231794|gb|ADI62930.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|166363123|ref|YP_001655396.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085496|dbj|BAG00204.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|159028065|emb|CAO87142.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor lactoaceticus 6A] gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor lactoaceticus 6A] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator] Length = 776 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V +F EI VG+ + +RDL A Sbjct: 355 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 411 >gi|325982976|ref|YP_004295378.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212] gi|325532495|gb|ADZ27216.1| ATP-dependent metalloprotease FtsH [Nitrosomonas sp. AL212] Length = 613 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 PKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|91786625|ref|YP_547577.1| FtsH-2 peptidase [Polaromonas sp. JS666] gi|91695850|gb|ABE42679.1| membrane protease FtsH catalytic subunit [Polaromonas sp. JS666] Length = 609 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGGGAAR-VRDLFEQA 248 >gi|332297160|ref|YP_004439082.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema brennaborense DSM 12168] gi|332180263|gb|AEE15951.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Treponema brennaborense DSM 12168] Length = 863 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTA 68 R + S L+R I GQ +A V A++ R R A LRD + N L GPTGVGKT Sbjct: 537 RNLESVLEREIFGQDEAVSLVVQAVK-RSR-----AGLRDPDKTAANFLFAGPTGVGKTE 590 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R LA+ G P ++ +++++ E V R Sbjct: 591 LARALAQSLGMPLLRFDMSEYQEKHTVSR 619 >gi|323491004|ref|ZP_08096198.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2] gi|323395360|gb|EGA88212.1| ATP-dependent metalloprotease FtsH [Planococcus donghaensis MPA1U2] Length = 672 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor kronotskyensis 2002] gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor kronotskyensis 2002] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor hydrothermalis 108] gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor hydrothermalis 108] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 256 >gi|307150022|ref|YP_003885406.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306980250|gb|ADN12131.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|297852714|ref|XP_002894238.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp. lyrata] gi|297340080|gb|EFH70497.1| hypothetical protein ARALYDRAFT_891950 [Arabidopsis lyrata subsp. lyrata] Length = 720 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 298 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 354 >gi|224065699|ref|XP_002301927.1| precursor of protein cell division protease ftsh-like protein [Populus trichocarpa] gi|222843653|gb|EEE81200.1| precursor of protein cell division protease ftsh-like protein [Populus trichocarpa] Length = 704 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338 >gi|218440504|ref|YP_002378833.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218173232|gb|ACK71965.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 616 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|168007929|ref|XP_001756660.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692256|gb|EDQ78614.1| predicted protein [Physcomitrella patens subsp. patens] Length = 677 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 225 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFSAA 281 >gi|115437800|ref|NP_001043384.1| Os01g0574400 [Oryza sativa Japonica Group] gi|75272532|sp|Q8LQJ9|FTSH4_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 4, mitochondrial; Short=OsFTSH4; Flags: Precursor gi|20521391|dbj|BAB91902.1| cell division protein-like [Oryza sativa Japonica Group] gi|113532915|dbj|BAF05298.1| Os01g0574400 [Oryza sativa Japonica Group] gi|125570900|gb|EAZ12415.1| hypothetical protein OsJ_02305 [Oryza sativa Japonica Group] Length = 709 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 255 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 311 >gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta] Length = 723 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V +F EI VG+ + +RDL A Sbjct: 319 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 375 >gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] Length = 675 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 575 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP G GKT +++ +A AG PF V ++F E+ +VGR + +RDL Sbjct: 320 LPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEM-FVGRGAAR-VRDL 372 >gi|308081381|ref|NP_001183829.1| hypothetical protein LOC100502422 [Zea mays] gi|238014784|gb|ACR38427.1| unknown [Zea mays] Length = 475 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 53 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 109 >gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior] Length = 749 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF V +F EI VG+ + +RDL A Sbjct: 340 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEI-LVGQGARR-VRDLFRAA 396 >gi|302849390|ref|XP_002956225.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f. nagariensis] gi|300258528|gb|EFJ42764.1| hypothetical protein VOLCADRAFT_83523 [Volvox carteri f. nagariensis] Length = 640 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 215 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEV-FVGVGARR-VRDLFTAA 271 >gi|240172853|ref|ZP_04751512.1| membrane-bound protease [Mycobacterium kansasii ATCC 12478] Length = 746 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPGRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 236 FVGVGASR-VRDLFDQA 251 >gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] Length = 645 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q++ A + PK LLVGP G GKT +++ +A AG PF + ++F E+ Sbjct: 187 LHNPQKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM- 240 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 241 FVGMGASK-VRDLFKQA 256 >gi|22297675|ref|NP_680922.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22293852|dbj|BAC07684.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 612 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|18422193|ref|NP_568604.1| VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] gi|17865467|sp|Q9FH02|FTSH5_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 5, chloroplastic; Short=AtFTSH5; AltName: Full=Protein VARIEGATED 1; Flags: Precursor gi|10177012|dbj|BAB10200.1| cell division protein FtsH [Arabidopsis thaliana] gi|22022513|gb|AAM83215.1| AT5g42270/K5J14_7 [Arabidopsis thaliana] gi|332007407|gb|AED94790.1| cell division protease ftsH-5 [Arabidopsis thaliana] Length = 704 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338 >gi|332187792|ref|ZP_08389526.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas sp. S17] gi|332012142|gb|EGI54213.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Sphingomonas sp. S17] Length = 772 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++R+ Sbjct: 461 TDLKRVVFGQNAAIENLSSAIKLSR------AGLRDPDKPIGNYLFTGPTGVGKTEVARQ 514 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA + G P + +++++ E GYVG + ++ D VD Sbjct: 515 LATILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561 >gi|302387411|ref|YP_003823233.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] gi|302198039|gb|ADL05610.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] Length = 625 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 9/113 (7%) Query: 3 LTFNFSPREIVSELD-----RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57 +TF S +I +E + R + GQ++AK A+ + + Q AD+ L PK L Sbjct: 158 MTFGKSNPKIYAESETGKTFRDVAGQEEAKEALK-EIVDFLHNPQKYADIGASL-PKGAL 215 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 216 LVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 266 >gi|226363733|ref|YP_002781515.1| ATP-dependent protease FtsH [Rhodococcus opacus B4] gi|226242222|dbj|BAH52570.1| ATP-dependent protease FtsH [Rhodococcus opacus B4] Length = 768 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ D A Sbjct: 239 FVGVGASR-VRDMFDQA 254 >gi|297795319|ref|XP_002865544.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp. lyrata] gi|297311379|gb|EFH41803.1| hypothetical protein ARALYDRAFT_494803 [Arabidopsis lyrata subsp. lyrata] Length = 701 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 279 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 335 >gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] Length = 658 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 181 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 237 >gi|17865457|sp|O82150|FTSH_TOBAC RecName: Full=ATP-dependent zinc metalloprotease FTSH, chloroplastic; AltName: Full=DS9; Flags: Precursor gi|5804782|dbj|BAA33755.2| chloroplast FtsH protease [Nicotiana tabacum] Length = 714 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 285 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 341 >gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046] Length = 679 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257 >gi|222424562|dbj|BAH20236.1| AT5G42270 [Arabidopsis thaliana] Length = 510 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 88 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 144 >gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905] gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905] Length = 660 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 181 IPKGILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 237 >gi|18402995|ref|NP_564563.1| FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] gi|17865766|sp|Q39102|FTSH1_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 1, chloroplastic; Short=AtFTSH1; Flags: Precursor gi|5734790|gb|AAD50055.1|AC007980_20 ATP-dependent metalloprotease [Arabidopsis thaliana] gi|20268684|gb|AAM14046.1| putative chloroplast FtsH protease [Arabidopsis thaliana] gi|21689847|gb|AAM67567.1| putative chloroplast FtsH protease [Arabidopsis thaliana] gi|332194407|gb|AEE32528.1| cell division protease ftsH-1 [Arabidopsis thaliana] Length = 716 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 294 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 350 >gi|315924893|ref|ZP_07921110.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC 23263] gi|315621792|gb|EFV01756.1| cell division protein FtsH [Pseudoramibacter alactolyticus ATCC 23263] Length = 678 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 186 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFDSA 242 >gi|189191032|ref|XP_001931855.1| cell division protease ftsH [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973461|gb|EDU40960.1| cell division protease ftsH [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 784 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 342 LPKGVLLVGPPGTGKTLLARACAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTAA 398 >gi|163816595|ref|ZP_02207959.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759] gi|158448295|gb|EDP25290.1| hypothetical protein COPEUT_02786 [Coprococcus eutactus ATCC 27759] Length = 629 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK +A L N + +++ A MPK ILLVGP G GKT +++ +A Sbjct: 193 VAGEDEAKENLAEIVEYLHNPGKYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVAGE 247 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 248 ANVPFFSMSGSEFVEM-FVGMGASK-VRDLFQQA 279 >gi|302753920|ref|XP_002960384.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii] gi|302767824|ref|XP_002967332.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii] gi|300165323|gb|EFJ31931.1| hypothetical protein SELMODRAFT_144519 [Selaginella moellendorffii] gi|300171323|gb|EFJ37923.1| hypothetical protein SELMODRAFT_139726 [Selaginella moellendorffii] Length = 628 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 206 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 262 >gi|225559825|gb|EEH08107.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus G186AR] Length = 822 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 390 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 446 >gi|148553054|ref|YP_001260636.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas wittichii RW1] gi|148498244|gb|ABQ66498.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sphingomonas wittichii RW1] Length = 771 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++R+ Sbjct: 461 TDLKRVVFGQDKAIEVLSSAIKLSR------AGLRDPDKPIGNYLFSGPTGVGKTEVARQ 514 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA + G P + +++++ E GYVG + ++ D VD Sbjct: 515 LASILGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 561 >gi|240276299|gb|EER39811.1| intermembrane space AAA protease IAP-1 [Ajellomyces capsulatus H143] Length = 818 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 386 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 442 >gi|317133210|ref|YP_004092524.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense YUAN-3] gi|315471189|gb|ADU27793.1| ATP-dependent metalloprotease FtsH [Ethanoligenens harbinense YUAN-3] Length = 622 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 255 >gi|224031915|gb|ACN35033.1| unknown [Zea mays] Length = 463 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 53 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 109 >gi|238601601|ref|XP_002395453.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553] gi|215466220|gb|EEB96383.1| hypothetical protein MPER_04493 [Moniliophthora perniciosa FA553] Length = 74 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 32/51 (62%) Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GPTG GKT + + LA++ PF + T FT+ GYVG +VE I+ L+ A Sbjct: 1 GPTGSGKTLLVKTLAKVLDVPFSVSDATSFTQAGYVGEDVEMAIQRLLQAA 51 >gi|325089842|gb|EGC43152.1| intermembrane space AAA protease [Ajellomyces capsulatus H88] Length = 818 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L + A Sbjct: 386 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFNQA 442 >gi|227202564|dbj|BAH56755.1| AT5G42270 [Arabidopsis thaliana] Length = 574 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 282 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 338 >gi|220907269|ref|YP_002482580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219863880|gb|ACL44219.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 612 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|23097534|ref|NP_691000.1| cell division protein [Oceanobacillus iheyensis HTE831] gi|22775757|dbj|BAC12035.1| cell division protein (general stress protein) [Oceanobacillus iheyensis HTE831] Length = 675 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 251 >gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 453 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ D A Sbjct: 191 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEM-FVGVGASR-VRDMFDQA 247 >gi|254294359|ref|YP_003060382.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hirschia baltica ATCC 49814] gi|254042890|gb|ACT59685.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hirschia baltica ATCC 49814] Length = 769 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + I ++L R + GQ DA AV+ A++ A LR+ P + L GPTGVGKT Sbjct: 454 KSISADLKRVVYGQDDAIAAVSDAIK------LARAGLREANKPIGSYLFSGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++R+LA + G ++ +++++ E GYVG + ++ D VD + V Sbjct: 508 VARQLASILGVELLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDGVDQHPHCV 564 >gi|169144773|gb|ACA49157.1| ATP-dependent protease ClpX ATP-binding subunit [Allochromatium vinosum DSM 180] Length = 116 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 6/100 (6%) Query: 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNST 380 PV L+ L+++ LILT+ + L+ QY L + EG+ L+ +D++ ++ A+ + Sbjct: 1 PVMATLEELDEAALMLILTEPKHALVKQYARLFEMEGVQLEIRDDALREISRKAMERKT- 59 Query: 381 VGDIGARRLQTVMERVLEDISFSASDLQE-KTVVIDAEYV 419 GAR L+T+ME+VL D + + VVIDA + Sbjct: 60 ----GARGLRTIMEQVLLDTMYDLPSMDHVSKVVIDASVI 95 >gi|73663554|ref|YP_302335.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496069|dbj|BAE19390.1| ATP-dependent Zn metallopeptidase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 696 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGTPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254 >gi|282882499|ref|ZP_06291120.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B] gi|300814614|ref|ZP_07094865.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297641|gb|EFA90116.1| cell division protease FtsH [Peptoniphilus lacrimalis 315-B] gi|300511233|gb|EFK38482.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 645 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +SR +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFEAA 251 >gi|302141673|emb|CBI18876.3| unnamed protein product [Vitis vinifera] Length = 538 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 141 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 197 >gi|159471125|ref|XP_001693707.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158283210|gb|EDP08961.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 578 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 183 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYTSGSEFEEV-FVGVGARR-VRDLFAAA 239 >gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15] gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15] Length = 618 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL A Sbjct: 178 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEV-FVGVGARR-VRDLFTAA 234 >gi|320161491|ref|YP_004174715.1| cell division protein FtsH [Anaerolinea thermophila UNI-1] gi|319995344|dbj|BAJ64115.1| cell division protein FtsH [Anaerolinea thermophila UNI-1] Length = 623 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I++ ++ AG PF + ++F E+ +VG + +RDL D A Sbjct: 196 IPKGVLLVGPPGTGKTLIAKAVSGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFDQA 252 >gi|227824810|ref|ZP_03989642.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] gi|226905309|gb|EEH91227.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] Length = 646 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 10/98 (10%) Query: 16 LDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 L R + G +AK R V L+ + QL A + PK +LL GP G GKT +++ Sbjct: 152 LFRDVAGADEAKQELREVVEFLKAPQKYNQLGAKI-----PKGVLLYGPPGTGKTLLAKA 206 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +A AG PF + + F E+ +VG + +RDL D A Sbjct: 207 VAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 242 >gi|147797811|emb|CAN74077.1| hypothetical protein VITISV_000978 [Vitis vinifera] Length = 663 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 274 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 330 >gi|323139857|ref|ZP_08074887.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322394884|gb|EFX97455.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 619 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILLVGP G GKT ++R +A AG PF+ + ++F E+ +VG + +RDL Sbjct: 192 IPKGILLVGPPGTGKTLLARAVAGEAGVPFLSITGSEFVEM-FVGVGAAR-VRDL 244 >gi|315186428|gb|EFU20188.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Spirochaeta thermophila DSM 6578] Length = 758 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + EL + GQ +A AV A+ R +RR P + L VGPTGVGK Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAIKRARAGFRRPDKPV--------ASFLFVGPTGVGK 503 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R LA + G P ++ +++++ E V R Sbjct: 504 TELARSLADIMGVPLLRFDMSEYQEKHTVSR 534 >gi|307718943|ref|YP_003874475.1| ClpA-like protein [Spirochaeta thermophila DSM 6192] gi|306532668|gb|ADN02202.1| ClpA-like protein [Spirochaeta thermophila DSM 6192] Length = 758 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + EL + GQ +A AV A+ R +RR P + L VGPTGVGK Sbjct: 452 RNLEQELKARLFGQDEAVEAVVQAIKRARAGFRRPDKPV--------ASFLFVGPTGVGK 503 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R LA + G P ++ +++++ E V R Sbjct: 504 TELARSLADIMGVPLLRFDMSEYQEKHTVSR 534 >gi|297624945|ref|YP_003706379.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM 17093] gi|297166125|gb|ADI15836.1| ATP-dependent metalloprotease FtsH [Truepera radiovictrix DSM 17093] Length = 665 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF+ V ++F E+ +VG + +R+L + A Sbjct: 195 IPKGMLLVGPPGTGKTLLARAVAGEAGVPFLTVSASEFMEM-FVGVGASR-VRNLFEEA 251 >gi|160894591|ref|ZP_02075367.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50] gi|156863902|gb|EDO57333.1| hypothetical protein CLOL250_02143 [Clostridium sp. L2-50] Length = 640 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 214 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDEA 270 >gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 351 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP G GKT +++ +A AG PF V ++F E+ +VGR + +RDL Sbjct: 96 LPRGVLLAGPPGTGKTLLAKAVAGEAGIPFFSVSASEFVEM-FVGRGAAR-VRDL 148 >gi|225459844|ref|XP_002285925.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 706 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 284 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 340 >gi|115470052|ref|NP_001058625.1| Os06g0725900 [Oryza sativa Japonica Group] gi|75321991|sp|Q5Z974|FTSH1_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 1, chloroplastic; Short=OsFTSH1; Flags: Precursor gi|54291028|dbj|BAD61706.1| putative chloroplast FtsH protease [Oryza sativa Japonica Group] gi|113596665|dbj|BAF20539.1| Os06g0725900 [Oryza sativa Japonica Group] gi|215694335|dbj|BAG89328.1| unnamed protein product [Oryza sativa Japonica Group] Length = 686 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 264 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 320 >gi|317126811|ref|YP_004093093.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM 2522] gi|315471759|gb|ADU28362.1| ATP-dependent metalloprotease FtsH [Bacillus cellulosilyticus DSM 2522] Length = 680 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 256 >gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] Length = 643 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I++ +A AG F+ + + F E+ YVG + +RDL D A Sbjct: 220 IPKGVLLVGPPGTGKTLIAKAVAGEAGVHFLSISGSDFVEL-YVGVGASR-VRDLFDQA 276 >gi|218198909|gb|EEC81336.1| hypothetical protein OsI_24516 [Oryza sativa Indica Group] Length = 630 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 208 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 264 >gi|121708056|ref|XP_001272015.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL 1] gi|119400163|gb|EAW10589.1| intermembrane space AAA protease IAP-1 [Aspergillus clavatus NRRL 1] Length = 789 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 353 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFSQA 409 >gi|227824800|ref|ZP_03989632.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] gi|226905299|gb|EEH91217.1| ATP-dependent metalloprotease ftsH [Acidaminococcus sp. D21] Length = 625 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L + R Q + A MPK +LLVGP G GKT +++ +A Sbjct: 169 VAGQDEAKEALQEIVSFLHDPSRYQAIGAT-----MPKGVLLVGPPGTGKTLLAKAVAGE 223 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 224 AKVPFFSISGSEFIEM-FVGMGAAR-VRDLFKQA 255 >gi|237751691|ref|ZP_04582171.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC 43879] gi|229373057|gb|EEO23448.1| ATP-dependent zinc metalloproteinase [Helicobacter bilis ATCC 43879] Length = 584 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP GVGKT I++ +A +G PF + F ++ YVG ++ +RDL Sbjct: 216 LPKGVLLVGPPGVGKTMIAKAIAGESGVPFFYHSGSSFVQV-YVGVGAQR-VRDL 268 >gi|125598556|gb|EAZ38336.1| hypothetical protein OsJ_22711 [Oryza sativa Japonica Group] Length = 686 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 264 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 320 >gi|255088145|ref|XP_002505995.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299] gi|226521266|gb|ACO67253.1| hypothetical protein MICPUN_106506 [Micromonas sp. RCC299] Length = 718 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QL A + PK LLVGP G GKT +++ +A AG PF ++F E+ Sbjct: 270 LKNPDKYTQLGAKI-----PKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEL- 323 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 324 FVGVGASR-VRDLFEKA 339 >gi|238605865|ref|XP_002396565.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553] gi|215469372|gb|EEB97495.1| hypothetical protein MPER_03174 [Moniliophthora perniciosa FA553] Length = 140 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLN 378 R P L L D R ILT+ + +L+ QY+ L G+ + FT +ID + A Sbjct: 8 RLPSITSLAPLTIPDLRRILTEVKGSLLSQYQALFGYSGVEIRFTSSAIDEICRKASEKG 67 Query: 379 STVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 GAR L+ +ME++L + + + V+I E VR Sbjct: 68 G-----GARGLRGIMEKILLEPMYEVPGSDIRHVLITEEVVR 104 >gi|209524573|ref|ZP_03273121.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209495031|gb|EDZ95338.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 621 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253 >gi|164687436|ref|ZP_02211464.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM 16795] gi|164603210|gb|EDQ96675.1| hypothetical protein CLOBAR_01077 [Clostridium bartlettii DSM 16795] Length = 666 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N + +++ A MPK LLVGP G GKT +++ +A Sbjct: 174 VAGQDEAKEALTEIVDFLHNPKKYEEIGA-----TMPKGALLVGPPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 229 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 260 >gi|220910286|ref|YP_002485597.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219866897|gb|ACL47236.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 623 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q+ A + PK +LLVGP G GKT +++ +A AG PF + ++F E+ Sbjct: 187 LKNPQRYSQIGARI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL- 240 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 241 FVGVGSAR-VRDLFEQA 256 >gi|312220414|emb|CBY00355.1| similar to intermembrane space AAA protease IAP-1 [Leptosphaeria maculans] Length = 772 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 332 LPKGVLLIGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTAA 388 >gi|290997828|ref|XP_002681483.1| aaa ATPase family protein [Naegleria gruberi] gi|284095107|gb|EFC48739.1| aaa ATPase family protein [Naegleria gruberi] Length = 948 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 25/152 (16%) Query: 44 PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNV 99 P RD +PK LLVGP G GKT +++ +A AG PF + ++F E +G V Sbjct: 488 PKKFRDIGARIPKGALLVGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEMVVGVGPARV 547 Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASI-----------NAEERILDALVGKT------ 142 ++ ++ D A +I+ D V Q N ++L + G T Sbjct: 548 RKLFKEAKDNAPSIIFIDEIDAVGRQRGTGKFMGRNDERENTLNQLLVEMDGFTPATGVV 607 Query: 143 --ATSNTREVFRKKL-RDGEISDKEIDIEVAD 171 A +N E+ K L R G D+ ID+ +AD Sbjct: 608 VLAATNRSEILDKALTRPGRF-DRSIDVSIAD 638 >gi|120553945|ref|YP_958296.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8] gi|310943138|sp|A1TZE0|FTSH_MARAV RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|120323794|gb|ABM18109.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8] Length = 633 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RD+ A Sbjct: 217 VMPKGVLLVGPPGTGKTLLARAIAGEAEVPFFSISASEFIEM-FVGVGAAR-VRDMFQTA 274 >gi|291566002|dbj|BAI88274.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 621 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253 >gi|224475654|ref|YP_002633260.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp. carnosus TM300] gi|222420261|emb|CAL27075.1| ATP-dependent metalloprotease FtsH [Staphylococcus carnosus subsp. carnosus TM300] Length = 700 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|160943998|ref|ZP_02091228.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii M21/2] gi|158444674|gb|EDP21678.1| hypothetical protein FAEPRAM212_01499 [Faecalibacterium prausnitzii M21/2] Length = 714 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT ++R A AG PF + + F E+ YVG + +RDL D A Sbjct: 245 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYSLSGSDFVEM-YVGVGASR-VRDLFDKA 301 >gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z] gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z] Length = 429 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I++ +A AG PF+++ ++ Y+G Q++RDL ++A Sbjct: 200 PKGVLLYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVH-KYIGEGA-QLVRDLFEMA 255 >gi|332970938|gb|EGK09912.1| cell division protein FtsH [Desmospora sp. 8437] Length = 632 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 249 >gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus pseudintermedius ED99] Length = 704 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] Length = 645 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 195 MPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGMGASR-VRDLFKQA 251 >gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 584 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG + +RDL + A Sbjct: 167 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVEL-FVGVGASR-VRDLFEKA 223 >gi|332704015|ref|ZP_08424103.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio africanus str. Walvis Bay] gi|332554164|gb|EGJ51208.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio africanus str. Walvis Bay] Length = 769 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ +EL + GQ A ++A +++ R R A L +E P N LL+GPTGVGKT Sbjct: 444 KDLDNELKGRVFGQDQAVDSIARSIK-RSR-----AGLGNETRPLGNFLLIGPTGVGKTE 497 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++++LA + G F++ +++++ E V R Sbjct: 498 LAKQLAEVMGVKFLRYDMSEYMEKHAVAR 526 >gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] Length = 704 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|295395571|ref|ZP_06805765.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC 49030] gi|294971590|gb|EFG47471.1| ATP-dependent metalloprotease FtsH [Brevibacterium mcbrellneri ATCC 49030] Length = 727 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK ++L GP G GKT ++R +A AG PF + + F E+ YVG + +RDL + A Sbjct: 223 IPKGVMLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-YVGVGASR-VRDLFEQAK 280 Query: 112 N 112 N Sbjct: 281 N 281 >gi|293401426|ref|ZP_06645569.1| cell division protein FtsH [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305064|gb|EFE46310.1| cell division protein FtsH [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 617 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + GQ++AK ++ L++ + ++ A MPK LLVGP G GKT +++ +A Sbjct: 167 RDVAGQEEAKESLQEMVDFLKDPEKYSKIGAQ-----MPKGALLVGPPGTGKTLLAKAVA 221 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VGR + +RDL A Sbjct: 222 GEANVPFFSISGSEFVEM-FVGRGAAR-VRDLFKQA 255 >gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] Length = 700 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AGAPF + + F E+ +VG + +RDL A Sbjct: 225 LPKGVLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 281 >gi|145350390|ref|XP_001419590.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579822|gb|ABO97883.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 651 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I++ +A AG PF ++F E+ +VG + +RDL + A Sbjct: 217 IPKGCLLVGPPGTGKTLIAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 273 >gi|320451085|ref|YP_004203181.1| cell division protein FtsH [Thermus scotoductus SA-01] gi|320151254|gb|ADW22632.1| cell division protein FtsH [Thermus scotoductus SA-01] Length = 627 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP GVGKT I+R +A A PFI + F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGVGKTHIARAVAGEAKVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244 >gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] Length = 625 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PFI + ++F E+ +VG + +RDL A Sbjct: 204 MPKGILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEM-FVGMGASK-VRDLFKKA 260 >gi|281207472|gb|EFA81655.1| Putative FtsH protease [Polysphondylium pallidum PN500] Length = 791 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%) Query: 48 RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 R+ ++PK ILLVGP G GKT +++ LA A PF+ + ++F E+ ++G ++ +RDL Sbjct: 272 RNIVIPKGILLVGPPGTGKTLLAKALAGEARIPFLTINGSEFEEM-FIGVGAKR-VRDLF 329 Query: 108 DVA 110 + A Sbjct: 330 ETA 332 >gi|114769424|ref|ZP_01447050.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255] gi|114550341|gb|EAU53222.1| Chaperonin clpA/B [alpha proteobacterium HTCC2255] Length = 771 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 RE+ + L R + GQ A A+A A++ A LR+ P N L GPTGVGKT Sbjct: 458 RELDASLKRVVFGQDPAIDALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 511 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G I+ +++++ E GYVG + ++ D VD Sbjct: 512 VAKQLADTLGVELIRFDMSEYMEKHAISRLIGAPPGYVGFDQGGLLTDGVD 562 >gi|159899548|ref|YP_001545795.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC 23779] gi|159892587|gb|ABX05667.1| ATP-dependent metalloprotease FtsH [Herpetosiphon aurantiacus ATCC 23779] Length = 651 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +SR +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 221 IPRGVLMVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 277 >gi|319790336|ref|YP_004151969.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1] gi|317114838|gb|ADU97328.1| ATP-dependent metalloprotease FtsH [Thermovibrio ammonificans HB-1] Length = 631 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QQL + PK +LL GP G GKT +++ +A A PF+ V ++F E+ Sbjct: 176 LKNPKKYQQLGGRI-----PKGVLLAGPPGTGKTLLAKAIAGEANVPFLSVSGSEFVEM- 229 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 230 FVGVGASR-VRDLFDQA 245 >gi|302791427|ref|XP_002977480.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii] gi|300154850|gb|EFJ21484.1| hypothetical protein SELMODRAFT_443489 [Selaginella moellendorffii] Length = 684 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 233 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 289 >gi|254825866|ref|ZP_05230867.1| FtsH [Listeria monocytogenes FSL J1-194] gi|293595105|gb|EFG02866.1| FtsH [Listeria monocytogenes FSL J1-194] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|83593444|ref|YP_427196.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum rubrum ATCC 11170] gi|83576358|gb|ABC22909.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum rubrum ATCC 11170] Length = 779 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L + GQ A A+A A++ A LR+ P N L GPTGVGKT ++R+L Sbjct: 462 DLKTMVFGQDQAIEALASAIKLAR------AGLREPTKPIGNYLFSGPTGVGKTEVARQL 515 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 AR+ G ++ +++++ E GYVG + ++ D VD + V Sbjct: 516 ARILGIELVRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAVDQQPHCV 567 >gi|307243201|ref|ZP_07525374.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] gi|306493462|gb|EFM65442.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] Length = 680 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +S+ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGILMVGPPGTGKTYLSKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|315274601|ref|ZP_07869471.1| putative cell division protease [Listeria marthii FSL S4-120] gi|313615771|gb|EFR89029.1| putative cell division protease [Listeria marthii FSL S4-120] Length = 270 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|228919016|ref|ZP_04082396.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956507|ref|ZP_04118304.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107752|ref|ZP_04237389.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-15] gi|229125583|ref|ZP_04254616.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-Cer4] gi|229142872|ref|ZP_04271314.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST24] gi|228640584|gb|EEK96972.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST24] gi|228657900|gb|EEL13705.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-Cer4] gi|228675725|gb|EEL30932.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-15] gi|228803197|gb|EEM50018.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840665|gb|EEM85926.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|152992606|ref|YP_001358327.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1] gi|151424467|dbj|BAF71970.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1] Length = 557 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT IS+ +A AG PF F I YVG +++ Sbjct: 191 LPKGVLLVGPPGVGKTLISKAVAGEAGVPFFYQSGASFVHI-YVGMGAKRV 240 >gi|113955040|ref|YP_730039.1| cell division protein FtsH3 [Synechococcus sp. CC9311] gi|113882391|gb|ABI47349.1| cell division protein FtsH3 [Synechococcus sp. CC9311] Length = 632 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 208 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 264 >gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4] gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus pseudofirmus OF4] Length = 679 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254 >gi|229194456|ref|ZP_04321260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1293] gi|228589046|gb|EEK47060.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1293] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|226222849|ref|YP_002756956.1| cell division protein ftsH [Listeria monocytogenes Clip81459] gi|225875311|emb|CAS04008.1| Putative cell division protein ftsH [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 695 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402] gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402] Length = 690 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257 >gi|308807935|ref|XP_003081278.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast precursor (ISS) [Ostreococcus tauri] gi|116059740|emb|CAL55447.1| FTSH_MEDSA Cell division protein ftsH homolog, chloroplast precursor (ISS) [Ostreococcus tauri] Length = 662 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I++ +A AG PF ++F E+ +VG + +RDL + A Sbjct: 221 IPKGCLLVGPPGTGKTLIAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 277 >gi|254933060|ref|ZP_05266419.1| FtsH [Listeria monocytogenes HPB2262] gi|254992585|ref|ZP_05274775.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL J2-064] gi|21667250|gb|AAM74002.1|AF467001_3 FtsH [Listeria monocytogenes] gi|293584618|gb|EFF96650.1| FtsH [Listeria monocytogenes HPB2262] Length = 687 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|56961888|ref|YP_173610.1| cell-division protein FtsH [Bacillus clausii KSM-K16] gi|56908122|dbj|BAD62649.1| cell-division protein FtsH [Bacillus clausii KSM-K16] Length = 662 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 253 >gi|46906452|ref|YP_012841.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype 4b str. F2365] gi|47093162|ref|ZP_00230937.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b H7858] gi|46879716|gb|AAT03018.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes serotype 4b str. F2365] gi|47018469|gb|EAL09227.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 4b H7858] gi|328467976|gb|EGF39003.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes 1816] gi|332310629|gb|EGJ23724.1| ATP-dependent zinc metalloprotease FtsH [Listeria monocytogenes str. Scott A] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|302780769|ref|XP_002972159.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii] gi|300160458|gb|EFJ27076.1| hypothetical protein SELMODRAFT_172575 [Selaginella moellendorffii] Length = 669 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 218 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 274 >gi|296166676|ref|ZP_06849101.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897941|gb|EFG77522.1| cell division protein FtsH [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 794 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|254977185|ref|ZP_05273657.1| cell division protein [Clostridium difficile QCD-66c26] gi|255094514|ref|ZP_05323992.1| cell division protein [Clostridium difficile CIP 107932] gi|255102771|ref|ZP_05331748.1| cell division protein [Clostridium difficile QCD-63q42] gi|255308592|ref|ZP_05352763.1| cell division protein [Clostridium difficile ATCC 43255] gi|255316266|ref|ZP_05357849.1| cell division protein [Clostridium difficile QCD-76w55] gi|255518927|ref|ZP_05386603.1| cell division protein [Clostridium difficile QCD-97b34] gi|255652106|ref|ZP_05399008.1| cell division protein [Clostridium difficile QCD-37x79] gi|255657509|ref|ZP_05402918.1| cell division protein [Clostridium difficile QCD-23m63] gi|306521840|ref|ZP_07408187.1| cell division protein [Clostridium difficile QCD-32g58] Length = 656 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +SR +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus halodurans C-125] gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus halodurans C-125] Length = 657 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 247 >gi|322822382|gb|EFZ28450.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 712 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%) Query: 2 KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57 K FNF REI VS + G +AK V L+N R Q L A L PK +L Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 L GP GVGKT +++ +A A PF+ ++F E+ YVG +++ Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342 >gi|255024485|ref|ZP_05296471.1| cell division protein FtsH [Listeria monocytogenes FSL J1-208] Length = 240 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 168 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 224 >gi|218458415|ref|ZP_03498506.1| cell division protein ftsH (ATP-dependent zinc-metallo protease) [Rhizobium etli Kim 5] Length = 192 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A AG P+ + ++F E+ +VG + +RDL + A Sbjct: 66 MPKGVLLVGPPGTGKTLLAKAVAGEAGVPYFSISGSEFVEM-FVGVGAAR-VRDLFEQA 122 >gi|168044454|ref|XP_001774696.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673996|gb|EDQ60511.1| predicted protein [Physcomitrella patens subsp. patens] Length = 687 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 235 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYCSGSEFEEM-FVGVGARR-VRDLFAAA 291 >gi|326494184|dbj|BAJ90361.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 594 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF + F E+ YVG ++ +R+L A Sbjct: 136 LPKGVLLMGPPGTGKTMLARAVAGEAGVPFCACSGSDFEEV-YVGLGAKR-VRELFQSA 192 >gi|156084264|ref|XP_001609615.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis] gi|154796867|gb|EDO06047.1| ATP-dependent metalloprotease FtsH family protein [Babesia bovis] Length = 706 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A L PK ILL GP G GKT ++R +A AG PFI+ ++F E+ Sbjct: 253 LKNPEKFERLGAKL-----PKGILLSGPPGTGKTLLARAIAGEAGVPFIQASGSEFEEM- 306 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + IR+L +A Sbjct: 307 FVGVGARR-IRELFALA 322 >gi|116073248|ref|ZP_01470510.1| Peptidase M41, FtsH [Synechococcus sp. RS9916] gi|116068553|gb|EAU74305.1| Peptidase M41, FtsH [Synechococcus sp. RS9916] Length = 621 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259 >gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus] Length = 679 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254 >gi|229176666|ref|ZP_04304071.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 172560W] gi|229188351|ref|ZP_04315400.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 10876] gi|228595150|gb|EEK52920.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 10876] gi|228606833|gb|EEK64249.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 172560W] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum] gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum] Length = 716 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 11/105 (10%) Query: 9 PREIVSELDRYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 P EI D + G +AK+ V L+N + QL L PK +LLVGP G G Sbjct: 267 PEEIHVTFDD-VKGADEAKQELKDVVEFLKNPDKFSQLGGKL-----PKGVLLVGPPGTG 320 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 KT ++R +A AG PF +F EI VG+ + +RDL A Sbjct: 321 KTLLARAVAGEAGVPFFHAAGPEFDEI-LVGQGARR-VRDLFKSA 363 >gi|16799329|ref|NP_469597.1| hypothetical protein lin0252 [Listeria innocua Clip11262] gi|16412681|emb|CAC95485.1| ftsH [Listeria innocua Clip11262] Length = 690 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|167036728|ref|YP_001664306.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039447|ref|YP_001662432.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|256751850|ref|ZP_05492722.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] gi|300915473|ref|ZP_07132786.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307725228|ref|YP_003904979.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] gi|320115150|ref|YP_004185309.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|310943091|sp|B0K5A3|FTSH1_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|166853687|gb|ABY92096.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514] gi|166855562|gb|ABY93970.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749257|gb|EEU62289.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus CCSD1] gi|300888533|gb|EFK83682.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561] gi|307582289|gb|ADN55688.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513] gi|319928241|gb|ADV78926.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 611 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 249 >gi|323456556|gb|EGB12423.1| hypothetical protein AURANDRAFT_52218 [Aureococcus anophagefferens] Length = 798 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT ++R +A AG PF ++F E+ YVG + +RDL + A Sbjct: 301 LPKGCLLMGPPGTGKTLLARAIAGEAGVPFFYASGSEFEEM-YVGVGARR-VRDLFEAA 357 >gi|299820645|ref|ZP_07052534.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601] gi|299817666|gb|EFI84901.1| ATP-dependent metalloprotease FtsH [Listeria grayi DSM 20601] Length = 687 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 210 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 266 >gi|229067830|ref|ZP_04201148.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus F65185] gi|228715314|gb|EEL67172.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus F65185] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|229170916|ref|ZP_04298519.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus MM3] gi|228612582|gb|EEK69801.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus MM3] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|220915955|ref|YP_002491259.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Anaeromyxobacter dehalogenans 2CP-1] gi|219953809|gb|ACL64193.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Anaeromyxobacter dehalogenans 2CP-1] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 R +V EL + I GQ A A+A A++ R L + E + L GPTGVGKT + Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGR 97 +++LAR+ G F++ ++T++ E V R Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533 >gi|158334765|ref|YP_001515937.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305006|gb|ABW26623.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 635 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 256 >gi|254854450|ref|ZP_05243798.1| FtsH [Listeria monocytogenes FSL R2-503] gi|300766353|ref|ZP_07076312.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL N1-017] gi|258607850|gb|EEW20458.1| FtsH [Listeria monocytogenes FSL R2-503] gi|300512952|gb|EFK40040.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes FSL N1-017] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|145257829|ref|XP_001401861.1| protein YME1 [Aspergillus niger CBS 513.88] gi|134074464|emb|CAK38759.1| unnamed protein product [Aspergillus niger] Length = 803 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 370 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 426 >gi|228912805|ref|ZP_04076453.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925319|ref|ZP_04088416.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931568|ref|ZP_04094475.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943872|ref|ZP_04106258.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228983321|ref|ZP_04143535.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089197|ref|ZP_04220479.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-42] gi|229119728|ref|ZP_04248990.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 95/8201] gi|229136912|ref|ZP_04265540.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST26] gi|229153844|ref|ZP_04281975.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 4342] gi|229182460|ref|ZP_04309712.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BGSC 6E1] gi|228601040|gb|EEK58608.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BGSC 6E1] gi|228629648|gb|EEK86344.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus ATCC 4342] gi|228646577|gb|EEL02783.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST26] gi|228663753|gb|EEL19331.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus 95/8201] gi|228694160|gb|EEL47841.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-42] gi|228776435|gb|EEM24787.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228815829|gb|EEM62064.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828120|gb|EEM73847.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834366|gb|EEM79906.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846865|gb|EEM91869.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|217965694|ref|YP_002351372.1| cell division protein FtsH [Listeria monocytogenes HCC23] gi|217334964|gb|ACK40758.1| cell division protein FtsH [Listeria monocytogenes HCC23] gi|307569759|emb|CAR82938.1| ATP-dependent metalloprotease [Listeria monocytogenes L99] Length = 690 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|164424835|ref|XP_963250.2| hypothetical protein NCU05427 [Neurospora crassa OR74A] gi|157070682|gb|EAA34014.2| hypothetical protein NCU05427 [Neurospora crassa OR74A] Length = 391 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 244 YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVS 285 +GIV LDEFDKI R++ NG V EGVQ+ LL LVEG+ V+ Sbjct: 61 HGIVVLDEFDKIARRETVNGRDVGGEGVQQALLKLVEGTKVT 102 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Query: 306 VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 ++ PADL +PE+ GR L L+ + ILT+ ++L+ QY L +T L Sbjct: 232 LASPADLQAFGFIPELIGRLHNICALSPLSLDELYRILTEPRNSLVAQYTALFETYPSKL 291 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 FT ++ A+A+ A + GAR L+ MERVL + + A Sbjct: 292 YFTRKALYAIAERAAK-----NETGARGLKMEMERVLAEPMYDA 330 >gi|295702308|ref|YP_003595383.1| cell division protease FtsH [Bacillus megaterium DSM 319] gi|294799967|gb|ADF37033.1| cell division protease FtsH [Bacillus megaterium DSM 319] Length = 636 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252 >gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|197121251|ref|YP_002133202.1| ATP-dependent Clp protease ATP-binding subunit clpA [Anaeromyxobacter sp. K] gi|196171100|gb|ACG72073.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Anaeromyxobacter sp. K] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 R +V EL + I GQ A A+A A++ R L + E + L GPTGVGKT + Sbjct: 451 RSLVPELRKVIYGQDQAIDAIASAIK--LSRSGLASP---EKPIGSFLFSGPTGVGKTEL 505 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGR 97 +++LAR+ G F++ ++T++ E V R Sbjct: 506 AKQLARILGVEFLRFDMTEYQEKHTVSR 533 >gi|158336375|ref|YP_001517549.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158306616|gb|ABW28233.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258 >gi|291166566|gb|EFE28612.1| ATP-dependent metalloprotease FtsH [Filifactor alocis ATCC 35896] Length = 666 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +S+ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGILMVGPPGTGKTYLSKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|289433575|ref|YP_003463447.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169819|emb|CBH26357.1| ATP-dependent metalloprotease FtsH [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 213 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 269 >gi|322420971|ref|YP_004200194.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] gi|320127358|gb|ADW14918.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] Length = 616 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 207 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISASAFIEM-FVGVGASR-VRDL 259 >gi|229027912|ref|ZP_04184067.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1271] gi|228733426|gb|EEL84253.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1271] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|229074127|ref|ZP_04207174.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-18] gi|229094787|ref|ZP_04225793.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-29] gi|229100862|ref|ZP_04231670.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-28] gi|229113742|ref|ZP_04243178.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-3] gi|228669739|gb|EEL25145.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock1-3] gi|228682562|gb|EEL36631.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-28] gi|228688655|gb|EEL42527.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-29] gi|228709021|gb|EEL61147.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-18] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|223985489|ref|ZP_03635548.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM 12042] gi|223962578|gb|EEF67031.1| hypothetical protein HOLDEFILI_02854 [Holdemania filiformis DSM 12042] Length = 619 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A++ L N + ++L A MPK LLVGP G GKT +++ +A Sbjct: 168 VAGQDEAKEALSEIVDFLHNPDKYKKLGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 222 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 223 ANVPFFSISGSEFVEM-FVGMGAAR-VRDLFKQA 254 >gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] Length = 670 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|116871603|ref|YP_848384.1| cell division ATP-dependent metalloprotease FtsH [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740481|emb|CAK19601.1| cell division ATP-dependent metalloprotease FtsH [Listeria welshimeri serovar 6b str. SLCC5334] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|126701185|ref|YP_001090082.1| cell division protein [Clostridium difficile 630] gi|260685079|ref|YP_003216364.1| cell division protein [Clostridium difficile CD196] gi|260688737|ref|YP_003219871.1| cell division protein [Clostridium difficile R20291] gi|296452819|ref|ZP_06894506.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08] gi|296879929|ref|ZP_06903901.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07] gi|115252622|emb|CAJ70465.1| Cell division protease FtsH2 [Clostridium difficile] gi|260211242|emb|CBA66769.1| cell division protein [Clostridium difficile CD196] gi|260214754|emb|CBE07450.1| cell division protein [Clostridium difficile R20291] gi|296258367|gb|EFH05275.1| M41 family endopeptidase FtsH [Clostridium difficile NAP08] gi|296429043|gb|EFH14918.1| M41 family endopeptidase FtsH [Clostridium difficile NAP07] Length = 664 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +SR +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGMLMVGPPGTGKTYLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|16802266|ref|NP_463751.1| hypothetical protein lmo0220 [Listeria monocytogenes EGD-e] gi|224500329|ref|ZP_03668678.1| hypothetical protein LmonF1_11934 [Listeria monocytogenes Finland 1988] gi|224503460|ref|ZP_03671767.1| hypothetical protein LmonFR_13282 [Listeria monocytogenes FSL R2-561] gi|254829311|ref|ZP_05233998.1| ftsH [Listeria monocytogenes FSL N3-165] gi|254832459|ref|ZP_05237114.1| hypothetical protein Lmon1_13976 [Listeria monocytogenes 10403S] gi|255028436|ref|ZP_05300387.1| hypothetical protein LmonL_03016 [Listeria monocytogenes LO28] gi|284803041|ref|YP_003414906.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578] gi|284996182|ref|YP_003417950.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923] gi|16409585|emb|CAD00747.1| ftsH [Listeria monocytogenes EGD-e] gi|258601724|gb|EEW15049.1| ftsH [Listeria monocytogenes FSL N3-165] gi|284058603|gb|ADB69544.1| hypothetical protein LM5578_2798 [Listeria monocytogenes 08-5578] gi|284061649|gb|ADB72588.1| hypothetical protein LM5923_2747 [Listeria monocytogenes 08-5923] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|30018336|ref|NP_829967.1| cell division protein ftsH [Bacillus cereus ATCC 14579] gi|218234053|ref|YP_002364915.1| cell division protein FtsH [Bacillus cereus B4264] gi|296500898|ref|YP_003662598.1| cell division protein FtsH [Bacillus thuringiensis BMB171] gi|29893876|gb|AAP07168.1| Cell division protein ftsH [Bacillus cereus ATCC 14579] gi|218162010|gb|ACK62002.1| cell division protein FtsH [Bacillus cereus B4264] gi|296321950|gb|ADH04878.1| cell division protein ftsH [Bacillus thuringiensis BMB171] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|294496941|ref|YP_003560641.1| cell division protease FtsH [Bacillus megaterium QM B1551] gi|294346878|gb|ADE67207.1| cell division protease FtsH [Bacillus megaterium QM B1551] Length = 636 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252 >gi|290894272|ref|ZP_06557239.1| ftsH protein [Listeria monocytogenes FSL J2-071] gi|290556156|gb|EFD89703.1| ftsH protein [Listeria monocytogenes FSL J2-071] Length = 690 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|88809073|ref|ZP_01124582.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805] gi|88787015|gb|EAR18173.1| Peptidase M41, FtsH [Synechococcus sp. WH 7805] Length = 625 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259 >gi|71420458|ref|XP_811493.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70876163|gb|EAN89642.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 712 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%) Query: 2 KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57 K FNF REI VS + G +AK V L+N R Q L A L PK +L Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 L GP GVGKT +++ +A A PF+ ++F E+ YVG +++ Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342 >gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar chinensis CT-43] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|317144506|ref|XP_001820171.2| protein YME1 [Aspergillus oryzae RIB40] Length = 805 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 366 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 422 >gi|307266278|ref|ZP_07547819.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] gi|326391162|ref|ZP_08212707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] gi|306918728|gb|EFN48961.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii Rt8.B1] gi|325992795|gb|EGD51242.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus JW 200] Length = 611 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 249 >gi|253576848|ref|ZP_04854173.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon 786 str. D14] gi|251843715|gb|EES71738.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. oral taxon 786 str. D14] Length = 709 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|229148475|ref|ZP_04276732.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1550] gi|228635017|gb|EEK91589.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus m1550] Length = 585 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202 >gi|238486048|ref|XP_002374262.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus NRRL3357] gi|220699141|gb|EED55480.1| intermembrane space AAA protease IAP-1 [Aspergillus flavus NRRL3357] Length = 624 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG +++ Sbjct: 185 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 234 >gi|149183225|ref|ZP_01861670.1| FtsH [Bacillus sp. SG-1] gi|148849058|gb|EDL63263.1| FtsH [Bacillus sp. SG-1] Length = 608 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 233 >gi|148240025|ref|YP_001225412.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147848564|emb|CAK24115.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 625 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 259 >gi|33152553|ref|NP_873906.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP] gi|33148777|gb|AAP96295.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP] Length = 639 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 241 >gi|89897277|ref|YP_520764.1| hypothetical protein DSY4531 [Desulfitobacterium hafniense Y51] gi|89336725|dbj|BAE86320.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 614 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ ++K A+A L N + ++ A+L PK LLVGP G GKT +++ +A Sbjct: 176 VAGQDESKEALAEIIDFLHNPKKYSEIGANL-----PKGALLVGPPGTGKTLLAKAVAGE 230 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 231 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFQQA 262 >gi|83768030|dbj|BAE58169.1| unnamed protein product [Aspergillus oryzae] Length = 719 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 280 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKR-VRELFTQA 336 >gi|47097259|ref|ZP_00234819.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 1/2a F6854] gi|254900995|ref|ZP_05260919.1| hypothetical protein LmonJ_14313 [Listeria monocytogenes J0161] gi|254913937|ref|ZP_05263949.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818] gi|254938273|ref|ZP_05269970.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900] gi|47014359|gb|EAL05332.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes str. 1/2a F6854] gi|258610883|gb|EEW23491.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes F6900] gi|293591955|gb|EFG00290.1| ATP-dependent metalloprotease FtsH [Listeria monocytogenes J2818] Length = 691 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|311694246|gb|ADP97119.1| cell division protein FtsH [marine bacterium HP15] Length = 637 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 9/70 (12%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RD+ Sbjct: 221 VMPKGVLLVGPPGTGKTLLARAIAGEAEVPFYSISASEFIEM-FVGVGAAR-VRDM---- 274 Query: 111 INIVRESRRD 120 +E+R+D Sbjct: 275 ---FKEARKD 281 >gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] Length = 616 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 233 >gi|229039971|ref|ZP_04189735.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH676] gi|228727379|gb|EEL78572.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH676] Length = 582 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199 >gi|229159239|ref|ZP_04287264.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus R309803] gi|228624254|gb|EEK81055.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus R309803] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] Length = 612 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 229 >gi|261403931|ref|YP_003240172.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10] gi|329925503|ref|ZP_08280377.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5] gi|261280394|gb|ACX62365.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. Y412MC10] gi|328939786|gb|EGG36126.1| ATP-dependent metallopeptidase HflB [Paenibacillus sp. HGF5] Length = 689 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|206972571|ref|ZP_03233514.1| cell division protein FtsH [Bacillus cereus AH1134] gi|229077355|ref|ZP_04210025.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-2] gi|206732473|gb|EDZ49652.1| cell division protein FtsH [Bacillus cereus AH1134] gi|228705952|gb|EEL58268.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock4-2] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|118473106|ref|YP_890326.1| cell division protein [Mycobacterium smegmatis str. MC2 155] gi|118174393|gb|ABK75289.1| cell division protein [Mycobacterium smegmatis str. MC2 155] Length = 770 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|71668170|ref|XP_821024.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70886390|gb|EAN99173.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 712 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 11/105 (10%) Query: 2 KLTFNFSPREI-VSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNIL 57 K FNF REI VS + G +AK V L+N R Q L A L PK +L Sbjct: 245 KSRFNFK-REISVSTRLADVAGLTEAKHEVVEVIDFLKNPARYQALGAKL-----PKGVL 298 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 L GP GVGKT +++ +A A PF+ ++F E+ YVG +++ Sbjct: 299 LDGPPGVGKTLLAKAVAGEAMVPFLSCSGSEFEEV-YVGVGAQRV 342 >gi|302038231|ref|YP_003798553.1| cell division protease FtsH [Candidatus Nitrospira defluvii] gi|300606295|emb|CBK42628.1| Cell division protease FtsH [Candidatus Nitrospira defluvii] Length = 594 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 183 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 239 >gi|229917401|ref|YP_002886047.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b] gi|229468830|gb|ACQ70602.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sp. AT1b] Length = 674 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252 >gi|228950614|ref|ZP_04112749.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228809089|gb|EEM55573.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 585 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202 >gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842] gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842] gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|301051803|ref|YP_003790014.1| cell division protein [Bacillus anthracis CI] gi|300373972|gb|ADK02876.1| cell division protein [Bacillus cereus biovar anthracis str. CI] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|183219658|ref|YP_001837654.1| cell division protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909795|ref|YP_001961350.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774471|gb|ABZ92772.1| ATP-dependent Zn protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778080|gb|ABZ96378.1| Cell division protease; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 650 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D Sbjct: 211 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 265 >gi|111021379|ref|YP_704351.1| cell division protein FtsH [Rhodococcus jostii RHA1] gi|110820909|gb|ABG96193.1| cell division protein FtsH [Rhodococcus jostii RHA1] Length = 756 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPMRYQSLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ D A Sbjct: 239 FVGVGASR-VRDMFDQA 254 >gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH 391-98] Length = 639 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|251794099|ref|YP_003008830.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2] gi|247541725|gb|ACS98743.1| ATP-dependent metalloprotease FtsH [Paenibacillus sp. JDR-2] Length = 670 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|256082754|ref|XP_002577618.1| ATP-dependent clp protease ATP-binding subunit clpx [Schistosoma mansoni] gi|238662943|emb|CAZ33856.1| ATP-dependent clp protease ATP-binding subunit clpx, putative [Schistosoma mansoni] Length = 320 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 5/82 (6%) Query: 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALA 371 ++PE GRFP+ L SLN+ +LT+ + LI QY+ L +G L T ++ A+A Sbjct: 237 MIPEFVGRFPIITALHSLNEEMLVRVLTEPRNALIKQYQLLFNIDGCELRVTPGALKAIA 296 Query: 372 DVAVNLNSTVGDIGARRLQTVM 393 +A++ ++ GAR L++V+ Sbjct: 297 RLALSQHT-----GARGLRSVL 313 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 15/75 (20%) Query: 245 GIVFLDEFDKIVARDSGNGIG---VSREGVQRDLLPLVEGSSVST-----------KYGS 290 GIV LDE DKI ++ +G+ + VS EGVQ+ +L L+EGS V+ + Sbjct: 86 GIVVLDEIDKISSK-TGHHLSTRDVSGEGVQQAMLKLLEGSVVNVPDVKSPRKLRGETFV 144 Query: 291 INTDHILFIASGAFH 305 ++T +ILFIA GAF+ Sbjct: 145 VDTTNILFIACGAFN 159 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 VGKT +++ LA PF + T T+ GYVG +VE I L+ A Sbjct: 30 VGKTLLAQTLAHYLNVPFALYDCTSITQAGYVGEDVESTIGRLLQNA 76 >gi|218295295|ref|ZP_03496131.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23] gi|218244498|gb|EED11023.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23] Length = 283 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R ++ A + PK +LLVGP GVGKT I+R +A A PFI + F E+ Sbjct: 175 LKNPGRFHEMGARI-----PKGVLLVGPPGVGKTHIARAVAGEARVPFITASGSDFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 229 FVGVGAAR-VRDLFETA 244 >gi|158337706|ref|YP_001518882.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158307947|gb|ABW29564.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258 >gi|70993660|ref|XP_751677.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus Af293] gi|66849311|gb|EAL89639.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus Af293] gi|159125401|gb|EDP50518.1| intermembrane space AAA protease IAP-1 [Aspergillus fumigatus A1163] Length = 799 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG +++ Sbjct: 363 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 412 >gi|47570189|ref|ZP_00240843.1| cell division protein FtsH [Bacillus cereus G9241] gi|47553133|gb|EAL11530.1| cell division protein FtsH [Bacillus cereus G9241] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|30260256|ref|NP_842633.1| cell division protein FtsH [Bacillus anthracis str. Ames] gi|47525318|ref|YP_016667.1| cell division protein FtsH [Bacillus anthracis str. 'Ames Ancestor'] gi|49183099|ref|YP_026351.1| cell division protein FtsH [Bacillus anthracis str. Sterne] gi|49476704|ref|YP_034418.1| cell division protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145151|ref|YP_081677.1| cell division protein [Bacillus cereus E33L] gi|65317526|ref|ZP_00390485.1| COG0465: ATP-dependent Zn proteases [Bacillus anthracis str. A2012] gi|118475836|ref|YP_892987.1| FtsH-2 peptidase [Bacillus thuringiensis str. Al Hakam] gi|165872578|ref|ZP_02217210.1| cell division protein FtsH [Bacillus anthracis str. A0488] gi|167635100|ref|ZP_02393417.1| cell division protein FtsH [Bacillus anthracis str. A0442] gi|167641516|ref|ZP_02399764.1| cell division protein FtsH [Bacillus anthracis str. A0193] gi|170707578|ref|ZP_02898031.1| cell division protein FtsH [Bacillus anthracis str. A0389] gi|177655624|ref|ZP_02936987.1| cell division protein FtsH [Bacillus anthracis str. A0174] gi|190568979|ref|ZP_03021880.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I] gi|196036369|ref|ZP_03103766.1| cell division protein FtsH [Bacillus cereus W] gi|196041768|ref|ZP_03109058.1| cell division protein FtsH [Bacillus cereus NVH0597-99] gi|196047383|ref|ZP_03114596.1| cell division protein FtsH [Bacillus cereus 03BB108] gi|206977945|ref|ZP_03238832.1| cell division protein FtsH [Bacillus cereus H3081.97] gi|217957641|ref|YP_002336183.1| cell division protein FtsH [Bacillus cereus AH187] gi|218901267|ref|YP_002449101.1| cell division protein FtsH [Bacillus cereus AH820] gi|222093835|ref|YP_002527884.1| cell division protein [Bacillus cereus Q1] gi|225862118|ref|YP_002747496.1| cell division protein FtsH [Bacillus cereus 03BB102] gi|227812739|ref|YP_002812748.1| cell division protein FtsH [Bacillus anthracis str. CDC 684] gi|229600537|ref|YP_002864717.1| cell division protein FtsH [Bacillus anthracis str. A0248] gi|254724206|ref|ZP_05185991.1| cell division protein FtsH [Bacillus anthracis str. A1055] gi|254735467|ref|ZP_05193175.1| cell division protein FtsH [Bacillus anthracis str. Western North America USA6153] gi|254744631|ref|ZP_05202310.1| cell division protein FtsH [Bacillus anthracis str. Kruger B] gi|254756336|ref|ZP_05208365.1| cell division protein FtsH [Bacillus anthracis str. Vollum] gi|254762392|ref|ZP_05214234.1| cell division protein FtsH [Bacillus anthracis str. Australia 94] gi|300119160|ref|ZP_07056861.1| cell division protein FtsH [Bacillus cereus SJ1] gi|30253577|gb|AAP24119.1| cell division protein FtsH [Bacillus anthracis str. Ames] gi|47500466|gb|AAT29142.1| cell division protein FtsH [Bacillus anthracis str. 'Ames Ancestor'] gi|49177026|gb|AAT52402.1| cell division protein FtsH [Bacillus anthracis str. Sterne] gi|49328260|gb|AAT58906.1| cell division protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978620|gb|AAU20170.1| cell division protein [Bacillus cereus E33L] gi|118415061|gb|ABK83480.1| membrane protease FtsH catalytic subunit [Bacillus thuringiensis str. Al Hakam] gi|164711706|gb|EDR17251.1| cell division protein FtsH [Bacillus anthracis str. A0488] gi|167510501|gb|EDR85899.1| cell division protein FtsH [Bacillus anthracis str. A0193] gi|167529574|gb|EDR92324.1| cell division protein FtsH [Bacillus anthracis str. A0442] gi|170127574|gb|EDS96448.1| cell division protein FtsH [Bacillus anthracis str. A0389] gi|172080035|gb|EDT65134.1| cell division protein FtsH [Bacillus anthracis str. A0174] gi|190559903|gb|EDV13887.1| cell division protein FtsH [Bacillus anthracis Tsiankovskii-I] gi|195990999|gb|EDX54970.1| cell division protein FtsH [Bacillus cereus W] gi|196021785|gb|EDX60479.1| cell division protein FtsH [Bacillus cereus 03BB108] gi|196027388|gb|EDX66005.1| cell division protein FtsH [Bacillus cereus NVH0597-99] gi|206743851|gb|EDZ55271.1| cell division protein FtsH [Bacillus cereus H3081.97] gi|217067927|gb|ACJ82177.1| cell division protein FtsH [Bacillus cereus AH187] gi|218538348|gb|ACK90746.1| cell division protein FtsH [Bacillus cereus AH820] gi|221237882|gb|ACM10592.1| cell division protein [Bacillus cereus Q1] gi|225790446|gb|ACO30663.1| cell division protein FtsH [Bacillus cereus 03BB102] gi|227006912|gb|ACP16655.1| cell division protein FtsH [Bacillus anthracis str. CDC 684] gi|229264945|gb|ACQ46582.1| cell division protein FtsH [Bacillus anthracis str. A0248] gi|298723482|gb|EFI64223.1| cell division protein FtsH [Bacillus cereus SJ1] gi|324324055|gb|ADY19315.1| cell division protein FtsH [Bacillus thuringiensis serovar finitimus YBT-020] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|307110057|gb|EFN58294.1| hypothetical protein CHLNCDRAFT_142278 [Chlorella variabilis] Length = 640 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 229 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFAAA 285 >gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] Length = 584 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199 >gi|159465357|ref|XP_001690889.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158279575|gb|EDP05335.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 727 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF ++F E+ +VG + +RDL + A Sbjct: 292 IPKGCLLVGPPGTGKTLLAKAVAGEAGTPFFSCAASEFVEV-FVGVGASR-VRDLFEKA 348 >gi|103485664|ref|YP_615225.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256] gi|98975741|gb|ABF51892.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256] Length = 779 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A ++ A++ A LRD P N L GPTGVGKT ++++ Sbjct: 461 TDLKRVVFGQNTAIEVLSSAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTEVAKQ 514 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA + G P + +++++ E GYVG + ++ D +D Sbjct: 515 LASIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAID 561 >gi|308182460|ref|YP_003926587.1| cell division protein (ftsH) [Helicobacter pylori PeCan4] gi|308064645|gb|ADO06537.1| cell division protein (ftsH) [Helicobacter pylori PeCan4] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|255521742|ref|ZP_05388979.1| cell division protein ftsH [Listeria monocytogenes FSL J1-175] Length = 400 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 268 >gi|253681305|ref|ZP_04862103.1| cell division protease FtsH [Clostridium botulinum D str. 1873] gi|253562543|gb|EES91994.1| cell division protease FtsH [Clostridium botulinum D str. 1873] Length = 657 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] Length = 585 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202 >gi|229083384|ref|ZP_04215734.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-44] gi|228699920|gb|EEL52555.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus Rock3-44] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|300857286|ref|YP_003782270.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528] gi|300437401|gb|ADK17168.1| ATP-dependent metalloprotease [Clostridium ljungdahlii DSM 13528] Length = 602 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL D A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 249 >gi|257440207|ref|ZP_05615962.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium prausnitzii A2-165] gi|257197241|gb|EEU95525.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium prausnitzii A2-165] Length = 767 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 9/89 (10%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 +EL + IIGQ DA VA A++ R R ADL P + + VGPTGVGKT + ++L Sbjct: 473 TELKKKIIGQDDAVHLVAQAVK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 526 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A P I+++++++ E V R + Sbjct: 527 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 555 >gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 585 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 146 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 202 >gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] Length = 648 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 257 >gi|170688931|ref|ZP_02880133.1| cell division protein FtsH [Bacillus anthracis str. A0465] gi|254682308|ref|ZP_05146169.1| cell division protein FtsH [Bacillus anthracis str. CNEVA-9066] gi|170667155|gb|EDT17916.1| cell division protein FtsH [Bacillus anthracis str. A0465] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|170077524|ref|YP_001734162.1| cell division protein ftsH like protein (ATP-dependent zinc metallopeptidase) [Synechococcus sp. PCC 7002] gi|169885193|gb|ACA98906.1| Cell division protein ftsH like protein (ATP-dependent zinc metallopeptidase) [Synechococcus sp. PCC 7002] Length = 625 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|42779144|ref|NP_976391.1| cell division protein FtsH [Bacillus cereus ATCC 10987] gi|42735059|gb|AAS38999.1| cell division protein FtsH [Bacillus cereus ATCC 10987] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] Length = 633 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|329948202|ref|ZP_08295074.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170 str. F0386] gi|328522935|gb|EGF50040.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 170 str. F0386] Length = 692 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293 >gi|284053281|ref|ZP_06383491.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str. Paraca] Length = 280 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 197 IPKGLLLVGPPGTGKTLMAKAVAGEAGVPFFSISASEFVEL-FVGTGAAR-VRDLFEQA 253 >gi|215424853|ref|ZP_03422772.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis T92] Length = 755 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 177 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 231 FVGVGASR-VRDLFEQA 246 >gi|89100506|ref|ZP_01173367.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911] gi|89084772|gb|EAR63912.1| Cell division protein ftsH [Bacillus sp. NRRL B-14911] Length = 662 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] Length = 582 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 143 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 199 >gi|157413381|ref|YP_001484247.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215] gi|157387956|gb|ABV50661.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9215] Length = 584 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%) Query: 28 RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 + V LR + Q L A +PK +LL+GP G GKT +++ +A +G PF+ + + Sbjct: 147 KEVITFLREPKKFQNLGAK-----VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISAS 201 Query: 88 KFTEIGYVGRNVEQIIRDLVDVA 110 +F E+ +VG + +RDL A Sbjct: 202 EFVEL-FVGVGASR-VRDLFSKA 222 >gi|15611341|ref|NP_222992.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99] gi|4154795|gb|AAD05852.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|307636980|gb|ADN79430.1| cell division protein [Helicobacter pylori 908] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|119222371|gb|ABL62383.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222373|gb|ABL62384.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222375|gb|ABL62385.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222377|gb|ABL62386.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222379|gb|ABL62387.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222381|gb|ABL62388.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 190 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%) Query: 62 TGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 TG GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 1 TGSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 58 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 59 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 118 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 119 DTTNILFICGGAF 131 >gi|15843222|ref|NP_338259.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551] gi|13883577|gb|AAK48073.1| cell division protein FtsH [Mycobacterium tuberculosis CDC1551] gi|323717718|gb|EGB26918.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis CDC1551A] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|332707482|ref|ZP_08427528.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332353740|gb|EGJ33234.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 626 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257 >gi|325995572|gb|ADZ50977.1| Cell division protein [Helicobacter pylori 2018] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|268608651|ref|ZP_06142378.1| ATP-dependent metalloprotease FtsH [Ruminococcus flavefaciens FD-1] Length = 667 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + +++ A + PK +LL+GP G GKT ++R +A AG PF + + F E+ Sbjct: 186 LKNPSKYKEIGAKV-----PKGVLLLGPPGTGKTLLARAVAGEAGCPFFPISGSDFVEM- 239 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 240 FVGVGASR-VRDLFEQA 255 >gi|168187052|ref|ZP_02621687.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] gi|169295060|gb|EDS77193.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] Length = 657 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|158334484|ref|YP_001515656.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158304725|gb|ABW26342.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 629 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258 >gi|87125460|ref|ZP_01081305.1| Peptidase M41, FtsH [Synechococcus sp. RS9917] gi|86166760|gb|EAQ68022.1| Peptidase M41, FtsH [Synechococcus sp. RS9917] Length = 625 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 257 >gi|325997167|gb|ADZ49375.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|315644387|ref|ZP_07897527.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453] gi|315280264|gb|EFU43556.1| ATP-dependent metalloprotease FtsH [Paenibacillus vortex V453] Length = 689 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|306790883|ref|ZP_07429205.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu004] gi|306795990|ref|ZP_07434292.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu006] gi|306801237|ref|ZP_07437905.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu008] gi|306805451|ref|ZP_07442119.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu007] gi|306969742|ref|ZP_07482403.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu009] gi|308369172|ref|ZP_07416832.2| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu002] gi|308371396|ref|ZP_07424839.2| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu003] gi|308372684|ref|ZP_07429508.2| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu005] gi|308328489|gb|EFP17340.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu002] gi|308328904|gb|EFP17755.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu003] gi|308332742|gb|EFP21593.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu004] gi|308340235|gb|EFP29086.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu005] gi|308343556|gb|EFP32407.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu006] gi|308348024|gb|EFP36875.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu007] gi|308351965|gb|EFP40816.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu008] gi|308352751|gb|EFP41602.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu009] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|260202801|ref|ZP_05770292.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] gi|289572264|ref|ZP_06452491.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] gi|289536695|gb|EFD41273.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|255322312|ref|ZP_05363458.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] gi|255300685|gb|EET79956.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] Length = 555 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT +++ +A AG PF F +I YVG +++ Sbjct: 188 MPKGVLMVGPPGVGKTLVAKAVAGEAGVPFFYQSGASFVQI-YVGMGAKRV 237 >gi|158338030|ref|YP_001519206.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158308271|gb|ABW29888.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 631 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFEQA 258 >gi|126695586|ref|YP_001090472.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301] gi|126542629|gb|ABO16871.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9301] Length = 617 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum Rt17-B1] gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum Rt17-B1] Length = 614 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 192 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFEQA 248 >gi|15610746|ref|NP_218127.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium tuberculosis H37Rv] gi|31794786|ref|NP_857279.1| membrane-bound protease FTSH (cell division protein) [Mycobacterium bovis AF2122/97] gi|121639529|ref|YP_979753.1| membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663474|ref|YP_001284997.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra] gi|148824816|ref|YP_001289569.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis F11] gi|215405659|ref|ZP_03417840.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis 02_1987] gi|215413533|ref|ZP_03422205.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis 94_M4241A] gi|215432584|ref|ZP_03430503.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis EAS054] gi|215447950|ref|ZP_03434702.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis T85] gi|218755392|ref|ZP_03534188.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis GM 1503] gi|219559685|ref|ZP_03538761.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis T17] gi|224992026|ref|YP_002646715.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172] gi|253800650|ref|YP_003033651.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 1435] gi|254233111|ref|ZP_04926437.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis C] gi|254366165|ref|ZP_04982209.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis str. Haarlem] gi|254552724|ref|ZP_05143171.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184530|ref|ZP_05762004.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis CPHL_A] gi|260198654|ref|ZP_05766145.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T46] gi|289441041|ref|ZP_06430785.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T46] gi|289445204|ref|ZP_06434948.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis CPHL_A] gi|289555872|ref|ZP_06445082.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 605] gi|289571849|ref|ZP_06452076.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T17] gi|289747446|ref|ZP_06506824.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987] gi|289748124|ref|ZP_06507502.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T92] gi|289755737|ref|ZP_06515115.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054] gi|289759770|ref|ZP_06519148.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85] gi|289763788|ref|ZP_06523166.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis GM 1503] gi|294993728|ref|ZP_06799419.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis 210] gi|297636285|ref|ZP_06954065.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 4207] gi|297733279|ref|ZP_06962397.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN R506] gi|298527088|ref|ZP_07014497.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis 94_M4241A] gi|306974083|ref|ZP_07486744.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu010] gi|307081791|ref|ZP_07490961.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu011] gi|307086407|ref|ZP_07495520.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu012] gi|313660609|ref|ZP_07817489.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN V2475] gi|61224305|sp|P0A4V9|FTSH_MYCBO RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|158513773|sp|A5U8T5|FTSH_MYCTA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|158517768|sp|P0C5C0|FTSH_MYCTU RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|2113966|emb|CAB08956.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|31620383|emb|CAD95826.1| MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN) [Mycobacterium bovis AF2122/97] gi|121495177|emb|CAL73663.1| Membrane-bound protease ftsH [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602904|gb|EAY61179.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis C] gi|134151677|gb|EBA43722.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis str. Haarlem] gi|148507626|gb|ABQ75435.1| cell division protein FtsH [Mycobacterium tuberculosis H37Ra] gi|148723343|gb|ABR07968.1| cell division protein ftsH (membrane-bound protease) [Mycobacterium tuberculosis F11] gi|224775141|dbj|BAH27947.1| membrane-bound protease [Mycobacterium bovis BCG str. Tokyo 172] gi|253322153|gb|ACT26756.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 1435] gi|289413960|gb|EFD11200.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T46] gi|289418162|gb|EFD15363.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis CPHL_A] gi|289440504|gb|EFD22997.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 605] gi|289545603|gb|EFD49251.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T17] gi|289687974|gb|EFD55462.1| cell division protein ftsH [Mycobacterium tuberculosis 02_1987] gi|289688711|gb|EFD56140.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis T92] gi|289696324|gb|EFD63753.1| membrane-bound protease ftsh [Mycobacterium tuberculosis EAS054] gi|289711294|gb|EFD75310.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis GM 1503] gi|289715334|gb|EFD79346.1| membrane-bound protease ftsh [Mycobacterium tuberculosis T85] gi|298496882|gb|EFI32176.1| membrane-bound protease ftsH (cell division protein) [Mycobacterium tuberculosis 94_M4241A] gi|308356600|gb|EFP45451.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu010] gi|308360557|gb|EFP49408.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu011] gi|308364173|gb|EFP53024.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis SUMu012] gi|326905448|gb|EGE52381.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis W-148] gi|328460381|gb|AEB05804.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis KZN 4207] Length = 760 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] Length = 617 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A+ L N + + + A+ MPK LLVGP G GKT ++R +A Sbjct: 166 VAGQDEAKEALMELVDFLHNPGKYKDIGAN-----MPKGALLVGPPGTGKTLLARAVAGE 220 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 221 AKVPFFSISGSEFVEM-FVGMGAAR-VRDLFKQA 252 >gi|254416851|ref|ZP_05030600.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196176397|gb|EDX71412.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 628 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL D A Sbjct: 197 IPKGVLLVGPPGTGKTLLAKAVAGEAEVPFFSISASEFVEL-FVGTGAAR-VRDLFDQA 253 >gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] Length = 605 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 44 PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 PA D LMPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + Sbjct: 187 PAKYTDVGALMPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK 245 Query: 102 IIRDLVDVA 110 +RDL A Sbjct: 246 -VRDLFKQA 253 >gi|304405792|ref|ZP_07387450.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus YK9] gi|304345035|gb|EFM10871.1| ATP-dependent metalloprotease FtsH [Paenibacillus curdlanolyticus YK9] Length = 671 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 254 >gi|87301141|ref|ZP_01083982.1| cell division protein [Synechococcus sp. WH 5701] gi|87284109|gb|EAQ76062.1| cell division protein [Synechococcus sp. WH 5701] Length = 626 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 257 >gi|320531218|ref|ZP_08032203.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171 str. F0337] gi|320136587|gb|EFW28550.1| ATP-dependent metallopeptidase HflB [Actinomyces sp. oral taxon 171 str. F0337] Length = 688 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293 >gi|317010567|gb|ADU84314.1| cell division protein FtsH3 [Helicobacter pylori SouthAfrica7] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|266622121|ref|ZP_06115056.1| cell division protein FtsH [Clostridium hathewayi DSM 13479] gi|288866171|gb|EFC98469.1| cell division protein FtsH [Clostridium hathewayi DSM 13479] Length = 622 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 9/113 (7%) Query: 3 LTFNFSPREIVSELDRY-----IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNIL 57 +TF S +I +E + + GQ++AK A+ + + Q AD+ L PK L Sbjct: 158 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALK-EIVDFLHNPQKYADIGASL-PKGAL 215 Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 216 LVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 266 >gi|223039935|ref|ZP_03610218.1| putative Cell division protease FtsH homolog [Campylobacter rectus RM3267] gi|222878803|gb|EEF13901.1| putative Cell division protease FtsH homolog [Campylobacter rectus RM3267] Length = 555 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT +++ +A AG PF F +I YVG +++ Sbjct: 188 MPKGVLMVGPPGVGKTLVAKAVAGEAGVPFFYQSGASFVQI-YVGMGAKRV 237 >gi|3426264|gb|AAC32257.1| cell division protein [Mycobacterium smegmatis] Length = 769 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|33866121|ref|NP_897680.1| cell division protein FtsH3 [Synechococcus sp. WH 8102] gi|33639096|emb|CAE08102.1| cell division protein FtsH3 [Synechococcus sp. WH 8102] Length = 624 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258 >gi|313680818|ref|YP_004058557.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus DSM 14977] gi|313153533|gb|ADR37384.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus DSM 14977] Length = 618 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF V ++F E+ +VG ++ Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFMEM-FVGVGASRV 248 >gi|310639530|ref|YP_003944288.1| ATP-dependent metalloprotease ftsh [Paenibacillus polymyxa SC2] gi|309244480|gb|ADO54047.1| ATP-dependent metalloprotease FtsH [Paenibacillus polymyxa SC2] Length = 679 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|310828188|ref|YP_003960545.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612] gi|308739922|gb|ADO37582.1| hypothetical protein ELI_2600 [Eubacterium limosum KIST612] Length = 611 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 15/118 (12%) Query: 3 LTFNFSPREIVSELD-----RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I E + + + GQ +AK A + L N + + A+L PK Sbjct: 152 MTFGKSNAKIYVEAETGKTFKDVAGQDEAKEALTEIVDFLHNPKKYADIGANL-----PK 206 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A + Sbjct: 207 GALLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQATD 262 >gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] Length = 677 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ A Sbjct: 218 VPKGILLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDMFQTA 274 >gi|289164075|ref|YP_003454213.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae NSW150] gi|288857248|emb|CBJ11073.1| protease, ATP-dependent zinc-metallo [Legionella longbeachae NSW150] Length = 553 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL Sbjct: 142 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDL 194 >gi|260886972|ref|ZP_05898235.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185] gi|260863034|gb|EEX77534.1| cell division protein FtsH [Selenomonas sputigena ATCC 35185] Length = 670 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 252 >gi|239907008|ref|YP_002953749.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio magneticus RS-1] gi|239796874|dbj|BAH75863.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Desulfovibrio magneticus RS-1] Length = 762 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%) Query: 14 SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71 EL + GQ DA A+A A LR+R A L + P + LL GPTGVGKT +++ Sbjct: 449 GELKNLVFGQNDAVDAIAKAILRSR-------AGLANAGKPTGSFLLAGPTGVGKTELAK 501 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGR 97 +LA + G F++ +++++ E V R Sbjct: 502 QLAAVLGVHFLRFDMSEYMEKHAVAR 527 >gi|119500238|ref|XP_001266876.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL 181] gi|119415041|gb|EAW24979.1| intermembrane space AAA protease IAP-1 [Neosartorya fischeri NRRL 181] Length = 821 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG +++ Sbjct: 385 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRV 434 >gi|169606596|ref|XP_001796718.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15] gi|111065055|gb|EAT86175.1| hypothetical protein SNOG_06344 [Phaeosphaeria nodorum SN15] Length = 763 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 21/145 (14%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A AG PF + ++F E+ YVG + V ++ + Sbjct: 323 LPKGVLLIGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEV-YVGVGAKRVRELFQQART 381 Query: 109 VAINIV----------RESRRDEVREQASINAEERILDALVGKT-----ATSNTREVFRK 153 A IV + RD + ++N LD T A +N E+ + Sbjct: 382 KAPAIVFIDELDAIGGKRKSRDANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQ 441 Query: 154 KL-RDGEISDKEIDIEVADTSSDIS 177 L R G D+ + +E+ D ++ Sbjct: 442 ALTRPGRF-DRHVQVELPDVGGRLA 465 >gi|109947137|ref|YP_664365.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba] gi|109714358|emb|CAJ99366.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba] Length = 550 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEAKVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|318042155|ref|ZP_07974111.1| cell division protein FtsH3 [Synechococcus sp. CB0101] Length = 626 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258 >gi|313673405|ref|YP_004051516.1| membrane protease ftsh catalytic subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312940161|gb|ADR19353.1| membrane protease FtsH catalytic subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 603 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 240 >gi|326773865|ref|ZP_08233147.1| cell division protein [Actinomyces viscosus C505] gi|326636004|gb|EGE36908.1| cell division protein [Actinomyces viscosus C505] Length = 691 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293 >gi|170076675|ref|YP_001733313.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002] gi|169884344|gb|ACA98057.1| ATP-dependent metalloprotease FtsH subfamily [Synechococcus sp. PCC 7002] Length = 620 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|153952819|ref|YP_001393584.1| FtsH1 [Clostridium kluyveri DSM 555] gi|219853484|ref|YP_002470606.1| hypothetical protein CKR_0141 [Clostridium kluyveri NBRC 12016] gi|146345700|gb|EDK32236.1| FtsH1 [Clostridium kluyveri DSM 555] gi|219567208|dbj|BAH05192.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 600 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL D A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 247 >gi|270157541|ref|ZP_06186198.1| cell division protease FtsH-like protein [Legionella longbeachae D-4968] gi|269989566|gb|EEZ95820.1| cell division protease FtsH-like protein [Legionella longbeachae D-4968] Length = 601 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDL 242 >gi|215400737|ref|YP_002327499.1| putative cell division protein FtsH [Vaucheria litorea] gi|310946771|sp|B7T1V0|FTSH_VAULI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|194441187|gb|ACF70915.1| putative cell division protein FtsH [Vaucheria litorea] Length = 644 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++L+GP G GKT +++ +A AG PFI + ++F E+ +VG + +RDL A Sbjct: 207 IPKGVILIGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFKTA 263 >gi|123968548|ref|YP_001009406.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601] gi|123198658|gb|ABM70299.1| cell division protein FtsH4 [Prochlorococcus marinus str. AS9601] Length = 584 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG + +RDL A Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222 >gi|118619366|ref|YP_907698.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99] gi|118571476|gb|ABL06227.1| membrane-bound protease FtsH [Mycobacterium ulcerans Agy99] Length = 740 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|33860785|ref|NP_892346.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633727|emb|CAE18685.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 618 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 251 >gi|311029001|ref|ZP_07707091.1| cell division protease FtsH [Bacillus sp. m3-13] Length = 644 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252 >gi|312084249|ref|XP_003144198.1| hypothetical protein LOAG_08620 [Loa loa] gi|307760641|gb|EFO19875.1| hypothetical protein LOAG_08620 [Loa loa] Length = 324 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 22 GQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 G +AK R + LR+ R QL A L PK +LLVGP G GKT +++ +A A Sbjct: 234 GTDEAKNELRGIVSYLRDPERYTQLGARL-----PKGVLLVGPPGTGKTLLAKAIAGEAQ 288 Query: 79 APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 PF + ++F E+ +VG+ + +RDL I V Sbjct: 289 VPFFQASGSEFDEL-FVGQGARR-VRDLFGKIIRKV 322 >gi|303289655|ref|XP_003064115.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454431|gb|EEH51737.1| predicted protein [Micromonas pusilla CCMP1545] Length = 613 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF ++F E+ +VG + +RDL A Sbjct: 151 LPKGVLLVGPPGTGKTMLARAVAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFKAA 207 >gi|123967784|ref|YP_001008642.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601] gi|123197894|gb|ABM69535.1| cell division protein FtsH2 [Prochlorococcus marinus str. AS9601] Length = 617 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|317969090|ref|ZP_07970480.1| cell division protein FtsH3 [Synechococcus sp. CB0205] Length = 634 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 210 IPKGVLLVGPPGTGKTLLSKAVAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 266 >gi|317013731|gb|ADU81167.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori Gambia94/24] Length = 550 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] Length = 631 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A++ L + + ++ A MPK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKEALSEIVDFLHDPGKYTEIGAK-----MPKGALLVGPPGTGKTLLAQAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL A Sbjct: 222 AGVPFFSISGSEFVEM-FVGMGASR-VRDLFKQA 253 >gi|308066893|ref|YP_003868498.1| cell division protein ftsH-like protein [Paenibacillus polymyxa E681] gi|305856172|gb|ADM67960.1| Cell division protein ftsH-like protein [Paenibacillus polymyxa E681] Length = 678 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 255 >gi|123965493|ref|YP_001010574.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515] gi|123199859|gb|ABM71467.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9515] Length = 619 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 252 >gi|119484306|ref|ZP_01618923.1| cell division protein [Lyngbya sp. PCC 8106] gi|119457780|gb|EAW38903.1| cell division protein [Lyngbya sp. PCC 8106] Length = 612 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|113477219|ref|YP_723280.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|110168267|gb|ABG52807.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 613 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|291569833|dbj|BAI92105.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 612 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|254526296|ref|ZP_05138348.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221537720|gb|EEE40173.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 617 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|209525311|ref|ZP_03273853.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209494326|gb|EDZ94639.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 612 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|183985081|ref|YP_001853372.1| membrane-bound protease FtsH [Mycobacterium marinum M] gi|183178407|gb|ACC43517.1| membrane-bound protease FtsH [Mycobacterium marinum M] Length = 746 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|331268352|ref|YP_004394844.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum BKT015925] gi|329124902|gb|AEB74847.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum BKT015925] Length = 662 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|295094966|emb|CBK84057.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1] Length = 606 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + +++ A MPK ILLVGP G GKT +++ +A A PF + ++F E+ Sbjct: 187 LHNPGKYKEIGAS-----MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM- 240 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 241 FVGMGASK-VRDLFQQA 256 >gi|254432006|ref|ZP_05045709.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001] gi|197626459|gb|EDY39018.1| cell division protein FtsH2 [Cyanobium sp. PCC 7001] Length = 649 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + ++F E+ +VG + +RDL Sbjct: 207 IPKGVLLIGPPGTGKTLLARAIAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 259 >gi|254421464|ref|ZP_05035182.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196188953|gb|EDX83917.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 613 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae] Length = 721 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F E+ VG+ + +RDL A Sbjct: 318 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 374 >gi|310829343|ref|YP_003961700.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium limosum KIST612] gi|308741077|gb|ADO38737.1| ATP-dependent metallopeptidase HflB subfamily protein [Eubacterium limosum KIST612] Length = 627 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFYIISGSDFVEM-FVGVGASR-VRDLFETA 252 >gi|269991327|emb|CAX12511.1| cell division protein FtsH-like protein [Fucus vesiculosus] Length = 628 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +++VGP G GKT +++ +A AG PFI + ++F E+ +VG + +RDL + A Sbjct: 207 PKGVIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFETA 262 >gi|188584723|ref|YP_001916268.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane protease FtsH catalytic subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|310946749|sp|B2A3Q4|FTSH_NATTJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|179349410|gb|ACB83680.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, membrane protease FtsH catalytic subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 693 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT + R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 186 IPKGVLLVGPPGTGKTLLGRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 242 >gi|153003705|ref|YP_001378030.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Anaeromyxobacter sp. Fw109-5] gi|152027278|gb|ABS25046.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Anaeromyxobacter sp. Fw109-5] Length = 763 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + EL + I GQ A A+ A++ R L + R P N L GPTGVGKT Sbjct: 450 RNLEPELKKVIFGQNAAVEAIVSAIK--LSRSGLGSPER----PIGNFLFSGPTGVGKTE 503 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++++LAR+ G F++ ++T++ E V R Sbjct: 504 LAKQLARILGVEFLRFDMTEYQEKHTVSR 532 >gi|72382193|ref|YP_291548.1| peptidase M41, FtsH [Prochlorococcus marinus str. NATL2A] gi|72002043|gb|AAZ57845.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. NATL2A] Length = 575 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 11/90 (12%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 + D + + I L+N P L+D PK +LLVGP G GKT ++R +A A P Sbjct: 132 ESDELKEIVIFLKN-------PQTLKDLGAKTPKGVLLVGPPGTGKTLLARSIAGEADVP 184 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + ++F E+ +VG + +RDL A Sbjct: 185 FFSISASEFVEM-FVGVGAGR-VRDLFKSA 212 >gi|261856348|ref|YP_003263631.1| ATP-dependent Clp protease ATP-binding subunit clpA [Halothiobacillus neapolitanus c2] gi|261836817|gb|ACX96584.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Halothiobacillus neapolitanus c2] Length = 758 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S RE++ LDR + GQ+DA + ++R + LR P + L GPT Sbjct: 443 SDREVLRHLDRNLNMVVFGQEDAIEQITTSIR------MARSGLRTADKPIGSYLFAGPT 496 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT +S++LARL G ++ +++++ E V R Sbjct: 497 GVGKTEVSKQLARLLGIKLVRFDMSEYMERHSVSR 531 >gi|254479639|ref|ZP_05092942.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] gi|214034424|gb|EEB75195.1| ATP-dependent metallopeptidase HflB subfamily protein [Carboxydibrachium pacificum DSM 12653] Length = 608 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 246 >gi|157412585|ref|YP_001483451.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215] gi|157387160|gb|ABV49865.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9215] Length = 617 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|113476986|ref|YP_723047.1| FtsH-2 peptidase [Trichodesmium erythraeum IMS101] gi|110168034|gb|ABG52574.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 621 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 193 IPKGLLLVGPPGTGKTLLSKAVAGEAGVPFFSISGSEFVEL-FVGTGAAR-VRDLFKQA 249 >gi|332981202|ref|YP_004462643.1| membrane protease FtsH catalytic subunit [Mahella australiensis 50-1 BON] gi|332698880|gb|AEE95821.1| membrane protease FtsH catalytic subunit [Mahella australiensis 50-1 BON] Length = 602 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 192 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFDQA 248 >gi|296447237|ref|ZP_06889167.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] gi|296255296|gb|EFH02393.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] Length = 637 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL Sbjct: 197 IPKGILLVGPPGTGKTLLARAVAGEAGVPFYSITGSEFVEM-FVGVGAAR-VRDL 249 >gi|291279420|ref|YP_003496255.1| cell division protein FtsH [Deferribacter desulfuricans SSM1] gi|290754122|dbj|BAI80499.1| cell division protein FtsH [Deferribacter desulfuricans SSM1] Length = 613 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFD 240 >gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] Length = 684 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 196 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 252 >gi|124025741|ref|YP_001014857.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A] gi|123960809|gb|ABM75592.1| cell division protein FtsH4 [Prochlorococcus marinus str. NATL1A] Length = 575 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 11/90 (12%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 + D + + I L+N P L+D PK +LLVGP G GKT ++R +A A P Sbjct: 132 ESDELKEIVIFLKN-------PQTLKDLGAKTPKGVLLVGPPGTGKTLLARSIAGEADVP 184 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + ++F E+ +VG + +RDL A Sbjct: 185 FFSISASEFVEM-FVGVGAGR-VRDLFKSA 212 >gi|16329602|ref|NP_440330.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492513|sp|P72991|FTSH3_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|1652085|dbj|BAA17010.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|332800065|ref|YP_004461564.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1] gi|332697800|gb|AEE92257.1| ATP-dependent metalloprotease FtsH [Tepidanaerobacter sp. Re1] Length = 599 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 245 >gi|315446252|ref|YP_004079131.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1] gi|315264555|gb|ADU01297.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. Spyr1] Length = 789 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] Length = 609 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK +LL+GP G GKT ++R +A AG PF + ++F E+ +VG Sbjct: 190 MPKGVLLIGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVG 233 >gi|168044124|ref|XP_001774532.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674087|gb|EDQ60600.1| predicted protein [Physcomitrella patens subsp. patens] Length = 630 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF V ++F E+ +VG + +RDL Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFAVSGSEFVEM-FVGVGASR-VRDL 252 >gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST] gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST] Length = 570 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F E+ VG+ + +RDL A Sbjct: 161 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 217 >gi|330839242|ref|YP_004413822.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC 35185] gi|329747006|gb|AEC00363.1| ATP-dependent metalloprotease FtsH [Selenomonas sputigena ATCC 35185] Length = 663 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 189 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 245 >gi|322379440|ref|ZP_08053810.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1] gi|322380949|ref|ZP_08055015.1| cell division protein FtsH [Helicobacter suis HS5] gi|321146621|gb|EFX41455.1| cell division protein FtsH [Helicobacter suis HS5] gi|321148149|gb|EFX42679.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1] Length = 553 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+L L PK +LLVGP GVGKT I++ LA A PF + F +I Sbjct: 174 LKNPKKYQELKIKL-----PKGVLLVGPPGVGKTMIAKALASEAKVPFFYHSGSAFVQI- 227 Query: 94 YVGRNVEQI 102 YVG +++ Sbjct: 228 YVGVGAKRV 236 >gi|157364388|ref|YP_001471155.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO] gi|310946767|sp|A8F7F7|FTSH_THELT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|157314992|gb|ABV34091.1| ATP-dependent metalloprotease FtsH [Thermotoga lettingae TMO] Length = 626 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 194 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNQA 250 >gi|148243292|ref|YP_001228449.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147851602|emb|CAK29096.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 618 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 251 >gi|118443161|ref|YP_877130.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT] gi|310943127|sp|A0PXM8|FTSH_CLONN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|118133617|gb|ABK60661.1| ATP-dependent metalloprotease FtsH [Clostridium novyi NT] Length = 676 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256 >gi|256374468|ref|YP_003098128.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827] gi|255918771|gb|ACU34282.1| ATP-dependent metalloprotease FtsH [Actinosynnema mirum DSM 43827] Length = 743 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|154499606|ref|ZP_02037644.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC 29799] gi|150271684|gb|EDM98928.1| hypothetical protein BACCAP_03262 [Bacteroides capillosus ATCC 29799] Length = 665 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A AG F+ + + F E+ YVG + +RDL D A Sbjct: 202 IPKGILLVGPPGTGKTLLAKAVAGEAGVHFLSISGSDFVEL-YVGVGASR-VRDLFDQA 258 >gi|20808757|ref|NP_623928.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4] gi|20517401|gb|AAM25532.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4] Length = 611 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 249 >gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform 1 [Apis mellifera] Length = 734 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F EI VG+ + +RDL A Sbjct: 313 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFEEI-LVGQGARR-MRDLFKAA 369 >gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus] gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus] Length = 757 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F E+ VG+ + +RDL A Sbjct: 347 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 403 >gi|37521486|ref|NP_924863.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35212483|dbj|BAC89858.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 611 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|327482314|gb|AEA85624.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166] Length = 613 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 189 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 245 >gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] Length = 801 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 243 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 244 FVGVGASR-VRDLFEQA 259 >gi|303275720|ref|XP_003057154.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461506|gb|EEH58799.1| predicted protein [Micromonas pusilla CCMP1545] Length = 731 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF ++F E+ +VG + +RDL + A Sbjct: 294 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 350 >gi|148238691|ref|YP_001224078.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147847230|emb|CAK22781.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 617 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|307297687|ref|ZP_07577493.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium mesG1.Ag.4.2] gi|306916947|gb|EFN47329.1| ATP-dependent metalloprotease FtsH [Thermotogales bacterium mesG1.Ag.4.2] Length = 633 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 194 MPKGLLLVGPPGTGKTLLARAVAGEAGVPFFFISGSDFVEL-FVGVGAAR-VRDLFTQA 250 >gi|294678708|ref|YP_003579323.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003] gi|294477528|gb|ADE86916.1| cell division protease FtsH [Rhodobacter capsulatus SB 1003] Length = 631 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ D A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242 >gi|75116392|sp|Q67WJ2|FTSH6_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; Short=OsFTSH6; Flags: Precursor gi|51535393|dbj|BAD37263.1| putative chloroplast protease [Oryza sativa Japonica Group] gi|51535559|dbj|BAD37477.1| putative chloroplast protease [Oryza sativa Japonica Group] Length = 686 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 254 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFDRA 309 >gi|145222008|ref|YP_001132686.1| ATP-dependent metalloprotease FtsH [Mycobacterium gilvum PYR-GCK] gi|145214494|gb|ABP43898.1| membrane protease FtsH catalytic subunit [Mycobacterium gilvum PYR-GCK] Length = 794 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|325675047|ref|ZP_08154734.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707] gi|325554633|gb|EGD24308.1| ATP-dependent metalloprotease FtsH [Rhodococcus equi ATCC 33707] Length = 777 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|6692685|gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana] Length = 662 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308 >gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] Length = 795 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 170 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 223 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 224 FVGVGASR-VRDLFEQA 239 >gi|298709650|emb|CBJ31458.1| conserved unknown protein [Ectocarpus siliculosus] Length = 951 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 PK ILLVGP G GKT I++ A AG PF+ ++F + YVG V + R Sbjct: 459 PKGILLVGPPGTGKTLIAKACAGEAGVPFLYACGSEFNGV-YVGMGVAAVKR 509 >gi|291459314|ref|ZP_06598704.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str. F0262] gi|291418568|gb|EFE92287.1| cell division protein FtsH [Oribacterium sp. oral taxon 078 str. F0262] Length = 692 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 265 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGMGAAK-VRDLFEQA 321 >gi|300867979|ref|ZP_07112618.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300334000|emb|CBN57796.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 612 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 245 >gi|218245163|ref|YP_002370534.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257058189|ref|YP_003136077.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218165641|gb|ACK64378.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256588355|gb|ACU99241.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|56751224|ref|YP_171925.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81299108|ref|YP_399316.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|56686183|dbj|BAD79405.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81167989|gb|ABB56329.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 613 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 246 >gi|312138052|ref|YP_004005388.1| cell division related ATP-dependent protease ftsh [Rhodococcus equi 103S] gi|311887391|emb|CBH46703.1| cell division related ATP-dependent protease FtsH [Rhodococcus equi 103S] Length = 777 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|237746179|ref|ZP_04576659.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein [Oxalobacter formigenes HOxBLS] gi|229377530|gb|EEO27621.1| ftsh-2 peptidase, metallo peptidase, merops family m41 protein [Oxalobacter formigenes HOxBLS] Length = 655 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 195 IPHGILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDLFEQA 251 >gi|325067914|ref|ZP_08126587.1| ATP-dependent metalloprotease FtsH [Actinomyces oris K20] Length = 358 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 237 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDLFDQA 293 >gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM 15176] gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM 15176] Length = 681 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT ++R A AG PF + + F E+ YVG + +RDL + A Sbjct: 221 IPHGVLLVGPPGTGKTLLARACAGEAGVPFYAISGSDFVEM-YVGVGASR-VRDLFEKA 277 >gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi] Length = 790 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F E+ VG+ + +RDL A Sbjct: 381 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 437 >gi|302833547|ref|XP_002948337.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f. nagariensis] gi|300266557|gb|EFJ50744.1| hypothetical protein VOLCADRAFT_80122 [Volvox carteri f. nagariensis] Length = 722 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF ++F E+ +VG + +RDL + A Sbjct: 287 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSCAASEFVEV-FVGVGASR-VRDLFEKA 343 >gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 825 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI +VG ++ +R+L A Sbjct: 375 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFTAA 431 >gi|297724619|ref|NP_001174673.1| Os06g0229066 [Oryza sativa Japonica Group] gi|255676855|dbj|BAH93401.1| Os06g0229066 [Oryza sativa Japonica Group] Length = 486 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 249 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFDRA 304 >gi|148381465|ref|YP_001256006.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 3502] gi|153933552|ref|YP_001385840.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 19397] gi|153937590|ref|YP_001389247.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. Hall] gi|168180994|ref|ZP_02615658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226950981|ref|YP_002806072.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] gi|148290949|emb|CAL85085.1| cell division protein [Clostridium botulinum A str. ATCC 3502] gi|152929596|gb|ABS35096.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 19397] gi|152933504|gb|ABS39003.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. Hall] gi|182668051|gb|EDT80030.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226843941|gb|ACO86607.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] gi|322807850|emb|CBZ05425.1| cell division protein FtsH [Clostridium botulinum H04402 065] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti] gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti] Length = 598 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF +F E+ VG+ + +RDL A Sbjct: 188 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 244 >gi|224068787|ref|XP_002302825.1| predicted protein [Populus trichocarpa] gi|222844551|gb|EEE82098.1| predicted protein [Populus trichocarpa] Length = 485 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 265 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 321 >gi|88807968|ref|ZP_01123479.1| cell division protein FtsH2 [Synechococcus sp. WH 7805] gi|88788007|gb|EAR19163.1| cell division protein FtsH2 [Synechococcus sp. WH 7805] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|242279265|ref|YP_002991394.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM 2638] gi|242122159|gb|ACS79855.1| ATP-dependent metalloprotease FtsH [Desulfovibrio salexigens DSM 2638] Length = 689 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240 >gi|208434232|ref|YP_002265898.1| cell division protein [Helicobacter pylori G27] gi|208432161|gb|ACI27032.1| cell division protein [Helicobacter pylori G27] Length = 527 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 170 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 220 >gi|255558698|ref|XP_002520373.1| Cell division protein ftsH, putative [Ricinus communis] gi|223540420|gb|EEF41989.1| Cell division protein ftsH, putative [Ricinus communis] Length = 701 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 271 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 327 >gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis] gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis] Length = 1157 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 243 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 299 >gi|182625999|ref|ZP_02953762.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str. JGS1721] gi|177908706|gb|EDT71217.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens D str. JGS1721] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|120406320|ref|YP_956149.1| ATP-dependent metalloprotease FtsH [Mycobacterium vanbaalenii PYR-1] gi|119959138|gb|ABM16143.1| membrane protease FtsH catalytic subunit [Mycobacterium vanbaalenii PYR-1] Length = 781 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|269101027|ref|YP_003289175.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] gi|310943129|sp|D1J722|FTSH_ECTSI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|266631535|emb|CAV31206.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] gi|270118665|emb|CAT18723.1| Probable chloroplast ATP-dependent protease [Ectocarpus siliculosus] Length = 661 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +++VGP G GKT +++ +A AG PFI + ++F E+ +VG + +RDL + A Sbjct: 228 PKGVIIVGPPGTGKTLLAKAIAGEAGVPFISISGSEFVEM-FVGIGASR-VRDLFETA 283 >gi|301123763|ref|XP_002909608.1| cell division protease ftsH [Phytophthora infestans T30-4] gi|262100370|gb|EEY58422.1| cell division protease ftsH [Phytophthora infestans T30-4] Length = 658 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF ++F E+ YVG + +RDL + A Sbjct: 253 LPKGVLLTGPPGTGKTLLARAIAGEAGVPFFYSSGSEFEEM-YVGVGARR-VRDLFESA 309 >gi|229827992|ref|ZP_04454061.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM 14600] gi|229792586|gb|EEP28700.1| hypothetical protein GCWU000342_00041 [Shuttleworthia satelles DSM 14600] Length = 672 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL Sbjct: 201 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDL 253 >gi|146283987|ref|YP_001174140.1| cell division protein FtsH [Pseudomonas stutzeri A1501] gi|145572192|gb|ABP81298.1| cell division protein FtsH [Pseudomonas stutzeri A1501] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 177 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 233 >gi|110800961|ref|YP_697158.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC 13124] gi|110675608|gb|ABG84595.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC 13124] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae ARSEF 23] Length = 688 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI +VG ++ +R+L A Sbjct: 237 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFAAA 293 >gi|209524767|ref|ZP_03273314.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328] gi|209494911|gb|EDZ95219.1| ATP-dependent chaperone ClpB [Arthrospira maxima CS-328] Length = 928 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L R +IGQQ+A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 603 QLESHLHRRVIGQQEAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 656 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA + I+++++++ E V R V Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689 >gi|78211853|ref|YP_380632.1| FtsH peptidase [Synechococcus sp. CC9605] gi|78196312|gb|ABB34077.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19] gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19] Length = 627 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ D A Sbjct: 191 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 247 >gi|126696352|ref|YP_001091238.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301] gi|126543395|gb|ABO17637.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9301] Length = 584 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG + +RDL A Sbjct: 166 FPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222 >gi|89901195|ref|YP_523666.1| ATP-dependent metalloprotease FtsH [Rhodoferax ferrireducens T118] gi|89345932|gb|ABD70135.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rhodoferax ferrireducens T118] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|86607354|ref|YP_476117.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab] gi|86555896|gb|ABD00854.1| cell division protein FtsH [Synechococcus sp. JA-3-3Ab] Length = 638 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 257 >gi|18311452|ref|NP_563386.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens str. 13] gi|168206865|ref|ZP_02632870.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str. JGS1987] gi|168211208|ref|ZP_02636833.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str. ATCC 3626] gi|168215142|ref|ZP_02640767.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE str. F4969] gi|168218230|ref|ZP_02643855.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC 8239] gi|18146136|dbj|BAB82176.1| probable cell-division protein [Clostridium perfringens str. 13] gi|170661765|gb|EDT14448.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str. JGS1987] gi|170710762|gb|EDT22944.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str. ATCC 3626] gi|170713449|gb|EDT25631.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE str. F4969] gi|182379753|gb|EDT77232.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC 8239] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|87125051|ref|ZP_01080898.1| cell division protein [Synechococcus sp. RS9917] gi|86167371|gb|EAQ68631.1| cell division protein [Synechococcus sp. RS9917] Length = 616 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|331003433|ref|ZP_08326932.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412479|gb|EGG91868.1| hypothetical protein HMPREF0491_01794 [Lachnospiraceae oral taxon 107 str. F0167] Length = 603 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 197 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253 >gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 609 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK + + L N + ++ A MPK +LLVGP G GKT +++ +A Sbjct: 167 VAGEDEAKESLTEIVDYLHNPQKYTEVGAS-----MPKGLLLVGPPGTGKTMLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 253 >gi|254432227|ref|ZP_05045930.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001] gi|197626680|gb|EDY39239.1| ATP-dependent metalloprotease FtsH [Cyanobium sp. PCC 7001] Length = 614 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247 >gi|170760265|ref|YP_001788865.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str. Loch Maree] gi|169407254|gb|ACA55665.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str. Loch Maree] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|170755847|ref|YP_001783165.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str. Okra] gi|169121059|gb|ACA44895.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str. Okra] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|169343167|ref|ZP_02864188.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str. JGS1495] gi|169298719|gb|EDS80795.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens C str. JGS1495] Length = 601 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] Length = 638 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 257 >gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium dendrobatidis JAM81] Length = 464 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF ++ ++F E+ YVG + +R+L A Sbjct: 72 LPKGVLLYGPPGTGKTHLARAIAGEAGVPFFQMSGSEFDEL-YVGVGARR-VRELFAAA 128 >gi|33864841|ref|NP_896400.1| cell division protein FtsH2 [Synechococcus sp. WH 8102] gi|33632364|emb|CAE06820.1| cell division protein FtsH2 [Synechococcus sp. WH 8102] Length = 615 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 600 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 175 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 227 >gi|315652556|ref|ZP_07905537.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] gi|315485185|gb|EFU75586.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] Length = 603 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 197 MPKGILLVGPPGTGKTMLAKAVAGEANVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253 >gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 586 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 168 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 224 >gi|225026759|ref|ZP_03715951.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353] gi|224955878|gb|EEG37087.1| hypothetical protein EUBHAL_01011 [Eubacterium hallii DSM 3353] Length = 604 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|110803261|ref|YP_699726.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101] gi|110683762|gb|ABG87132.1| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101] Length = 601 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|42561751|ref|NP_563766.3| FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] gi|75331430|sp|Q8W585|FTSH8_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 8, chloroplastic; Short=AtFTSH8; Flags: Precursor gi|16930423|gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana] gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24 [Arabidopsis thaliana] gi|28392858|gb|AAO41866.1| putative FtsH protease [Arabidopsis thaliana] gi|332189865|gb|AEE27986.1| cell division protease ftsH-8 [Arabidopsis thaliana] Length = 685 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308 >gi|322824610|gb|EFZ29959.1| katanin-like protein, putative [Trypanosoma cruzi] Length = 926 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AKR+V A+ RR L LRD P+ +LL GP G GKT I+R +A A Sbjct: 608 IAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRAQC 665 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 F+ + + ++G + E+++R L VA+ Sbjct: 666 TFLNISASSLMS-KWMG-DGEKLVRCLFAVAV 695 >gi|298243635|ref|ZP_06967442.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297556689|gb|EFH90553.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 676 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + ++F E+ VG + +RDL D A Sbjct: 234 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEV-LVGVGASR-VRDLFDQA 290 >gi|291335263|gb|ADD94882.1| FtsH peptidase [uncultured marine bacterium MedDCM-OCT-S09-C166] Length = 616 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|260436648|ref|ZP_05790618.1| cell division protease FtsH [Synechococcus sp. WH 8109] gi|260414522|gb|EEX07818.1| cell division protease FtsH [Synechococcus sp. WH 8109] Length = 616 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 249 >gi|224128696|ref|XP_002320396.1| predicted protein [Populus trichocarpa] gi|222861169|gb|EEE98711.1| predicted protein [Populus trichocarpa] Length = 684 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319 >gi|116072106|ref|ZP_01469374.1| Peptidase M41, FtsH [Synechococcus sp. BL107] gi|116065729|gb|EAU71487.1| Peptidase M41, FtsH [Synechococcus sp. BL107] Length = 617 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|21954076|gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana] Length = 501 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 68 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 120 >gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205] Length = 626 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 248 >gi|315586280|gb|ADU40661.1| cell division protein (FtsH) [Helicobacter pylori 35A] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|254526680|ref|ZP_05138732.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202] gi|221538104|gb|EEE40557.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9202] Length = 584 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG + +RDL A Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVGVGASR-VRDLFSKA 222 >gi|153941351|ref|YP_001392879.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. Langeland] gi|152937247|gb|ABS42745.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. Langeland] gi|295320856|gb|ADG01234.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. 230613] Length = 601 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|317012128|gb|ADU82736.1| cell division protein (ftsH) [Helicobacter pylori Lithuania75] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|297848920|ref|XP_002892341.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338183|gb|EFH68600.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 685 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 252 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 308 >gi|168183605|ref|ZP_02618269.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf] gi|237796986|ref|YP_002864538.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] gi|182673184|gb|EDT85145.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Bf] gi|229262710|gb|ACQ53743.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] Length = 601 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|158335586|ref|YP_001516758.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305827|gb|ABW27444.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 611 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 244 >gi|78185610|ref|YP_378044.1| peptidase M41, FtsH [Synechococcus sp. CC9902] gi|78169904|gb|ABB27001.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus sp. CC9902] Length = 617 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|303233293|ref|ZP_07319964.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4] gi|302480593|gb|EFL43682.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4] Length = 635 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK LLVGP G GKT ++R +A A PF ++ ++F E+ +VGR + +RDL A Sbjct: 213 CPKGALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEFVEM-FVGRGAAK-VRDLFKQA 269 >gi|312113136|ref|YP_004010732.1| ATP-dependent Clp protease ATP-binding subunit clpA [Rhodomicrobium vannielii ATCC 17100] gi|311218265|gb|ADP69633.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodomicrobium vannielii ATCC 17100] Length = 786 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L R + GQ A A++ A++ A LRD P + L GPTGVGKT Sbjct: 459 RNLEGDLRRVVFGQDQAIHALSAAIKLAR------AGLRDAEKPIGSYLFSGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LA L G ++ +++++ E GYVG + ++ D VD Sbjct: 513 VARQLASLLGVQILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 563 >gi|317153521|ref|YP_004121569.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio aespoeensis Aspo-2] gi|316943772|gb|ADU62823.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio aespoeensis Aspo-2] Length = 776 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 7/84 (8%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRL 73 +L + GQ +A RA+A +++ R R A +R P LL GPTGVGKT ++R+L Sbjct: 461 DLKSVVFGQDEAVRALARSIK-RSR-----AGMRQSGRPVGCFLLTGPTGVGKTELARQL 514 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGR 97 A++ G F++ +++++ E V R Sbjct: 515 AKVLGISFLRYDMSEYMEKHAVAR 538 >gi|210623232|ref|ZP_03293671.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275] gi|210153769|gb|EEA84775.1| hypothetical protein CLOHIR_01621 [Clostridium hiranonis DSM 13275] Length = 668 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QL A + PK IL+VGP G GKT +S+ +A AG PF + + F E+ Sbjct: 178 LKNPKKYTQLGARI-----PKGILMVGPPGTGKTFLSKAVAGEAGVPFFSISGSDFVEM- 231 Query: 94 YVG 96 +VG Sbjct: 232 FVG 234 >gi|254421263|ref|ZP_05034981.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196188752|gb|EDX83716.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 668 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 244 IPKGVLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEM-FVGVGASR-VRDL 296 >gi|187777493|ref|ZP_02993966.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC 15579] gi|187774421|gb|EDU38223.1| hypothetical protein CLOSPO_01068 [Clostridium sporogenes ATCC 15579] Length = 601 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|317180091|dbj|BAJ57877.1| cell division protein [Helicobacter pylori F32] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|308063148|gb|ADO05035.1| cell division protein (ftsH) [Helicobacter pylori Sat464] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|237748251|ref|ZP_04578731.1| ftsH protein [Oxalobacter formigenes OXCC13] gi|229379613|gb|EEO29704.1| ftsH protein [Oxalobacter formigenes OXCC13] Length = 650 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P ILLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 196 IPHGILLVGPPGTGKTLLARAVAGEAGVPFFSINGSEFVEM-FVGVGAAR-VRDLFEQA 252 >gi|224111036|ref|XP_002332995.1| predicted protein [Populus trichocarpa] gi|222834384|gb|EEE72861.1| predicted protein [Populus trichocarpa] Length = 472 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 42 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 94 >gi|217033423|ref|ZP_03438853.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10] gi|216944128|gb|EEC23556.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|210134484|ref|YP_002300923.1| cell division protein FtsH [Helicobacter pylori P12] gi|210132452|gb|ACJ07443.1| cell division protein FtsH [Helicobacter pylori P12] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|188527092|ref|YP_001909779.1| cell division protein (ftsH) [Helicobacter pylori Shi470] gi|188143332|gb|ACD47749.1| cell division protein (ftsH) [Helicobacter pylori Shi470] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|78223097|ref|YP_384844.1| FtsH peptidase [Geobacter metallireducens GS-15] gi|78194352|gb|ABB32119.1| membrane protease FtsH catalytic subunit [Geobacter metallireducens GS-15] Length = 608 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|71414691|ref|XP_809439.1| katanin-like protein [Trypanosoma cruzi strain CL Brener] gi|70873820|gb|EAN87588.1| katanin-like protein, putative [Trypanosoma cruzi] Length = 923 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AKR+V A+ RR L LRD P+ +LL GP G GKT I+R +A A Sbjct: 608 IAGLEHAKRSVEEAIVWPLRRPDLFVGLRDP--PRGLLLFGPPGTGKTMIARAIANRAQC 665 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 F+ + + ++G + E+++R L VA+ Sbjct: 666 TFLNISASSLMS-KWMG-DGEKLVRCLFAVAV 695 >gi|226942974|ref|YP_002798047.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii DJ] gi|226717901|gb|ACO77072.1| ATP-dependent metallopeptidase M41, FtsH [Azotobacter vinelandii DJ] Length = 616 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 188 MPKGVLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] Length = 671 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 191 LQNPGKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 245 FVGVGASR-VRDLFEQA 260 >gi|323486012|ref|ZP_08091343.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum WAL-14163] gi|323400579|gb|EGA92946.1| hypothetical protein HMPREF9474_03094 [Clostridium symbiosum WAL-14163] Length = 625 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + + GQ +AK A + L N + ++ A ++PK Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258 >gi|317968672|ref|ZP_07970062.1| cell division protein FtsH [Synechococcus sp. CB0205] Length = 614 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247 >gi|255527646|ref|ZP_05394506.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296186911|ref|ZP_06855312.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] gi|255508659|gb|EET85039.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296048625|gb|EFG88058.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] Length = 600 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|217076556|ref|YP_002334272.1| putative Cell division protease FtsH-like protein [Thermosipho africanus TCF52B] gi|217036409|gb|ACJ74931.1| putative Cell division protease FtsH-like protein [Thermosipho africanus TCF52B] Length = 618 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 192 MPKGVLLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNKA 248 >gi|168016254|ref|XP_001760664.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688024|gb|EDQ74403.1| predicted protein [Physcomitrella patens subsp. patens] Length = 634 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R ++ AG PF ++F E+ +VG + +RDL + A Sbjct: 212 IPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 268 >gi|168034706|ref|XP_001769853.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678962|gb|EDQ65415.1| predicted protein [Physcomitrella patens subsp. patens] Length = 635 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 257 >gi|150020111|ref|YP_001305465.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis BI429] gi|149792632|gb|ABR30080.1| ATP-dependent metalloprotease FtsH [Thermosipho melanesiensis BI429] Length = 617 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 192 MPKGVLLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDLFNQA 248 >gi|161525463|ref|YP_001580475.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189349804|ref|YP_001945432.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|160342892|gb|ABX15978.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189333826|dbj|BAG42896.1| cell division protease [Burkholderia multivorans ATCC 17616] Length = 615 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|323692944|ref|ZP_08107165.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum WAL-14673] gi|323502945|gb|EGB18786.1| ATP-dependent metalloprotease FtsH [Clostridium symbiosum WAL-14673] Length = 625 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + + GQ +AK A + L N + ++ A ++PK Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQDEAKEALQEIVDFLHNPQKYAEIGA-----ILPK 204 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258 >gi|261837732|gb|ACX97498.1| metalloprotease [Helicobacter pylori 51] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|83646751|ref|YP_435186.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396] gi|123739894|sp|Q2SF13|FTSH_HAHCH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|83634794|gb|ABC30761.1| ATP-dependent Zn protease [Hahella chejuensis KCTC 2396] Length = 619 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 20/99 (20%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDE--------LMPKNILLVGPTGVGKTAISR 71 + GQ +AKR V Q+L LRD L P+ +LL+GP G GKT ++R Sbjct: 178 VAGQTNAKREV----------QELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLAR 227 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LA AG F + ++F E+ +VG + +R L +A Sbjct: 228 ALAGEAGVNFYPMSASEFIEV-FVGVGASR-VRQLFKIA 264 >gi|332673127|gb|AEE69944.1| cell division protein (ftsH) [Helicobacter pylori 83] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|328953179|ref|YP_004370513.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] gi|328453503|gb|AEB09332.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] Length = 624 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 244 >gi|291287208|ref|YP_003504024.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM 12809] gi|290884368|gb|ADD68068.1| ATP-dependent metalloprotease FtsH [Denitrovibrio acetiphilus DSM 12809] Length = 619 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 630 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262 >gi|4325041|gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum] Length = 693 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319 >gi|37522710|ref|NP_926087.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35213712|dbj|BAC91082.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 626 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGAAR-VRDLFEQA 256 >gi|322701840|gb|EFY93588.1| intermembrane space AAA protease IAP-1 [Metarhizium acridum CQMa 102] Length = 740 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F EI +VG ++ +R+L A Sbjct: 289 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEI-FVGVGAKR-VRELFAAA 345 >gi|147809607|emb|CAN73350.1| hypothetical protein VITISV_000418 [Vitis vinifera] Length = 694 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 264 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 320 >gi|3808101|emb|CAA09935.1| chloroplast protease [Capsicum annuum] Length = 693 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 319 >gi|108562713|ref|YP_627029.1| cell division protein [Helicobacter pylori HPAG1] gi|107836486|gb|ABF84355.1| cell division protein [Helicobacter pylori HPAG1] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|309780957|ref|ZP_07675696.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA] gi|330824647|ref|YP_004387950.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] gi|57282289|emb|CAD32530.1| putative zinc metallopeptidase [uncultured bacterium] gi|308920260|gb|EFP65918.1| FtsH cell division protein [Ralstonia sp. 5_7_47FAA] gi|329310019|gb|AEB84434.1| ATP-dependent metalloprotease FtsH [Alicycliphilus denitrificans K601] Length = 627 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLTKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|15644914|ref|NP_207084.1| cell division protein (ftsH) [Helicobacter pylori 26695] gi|2313382|gb|AAD07354.1| cell division protein (ftsH) [Helicobacter pylori 26695] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|75114857|sp|Q655S1|FTSH2_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; Short=OsFTSH2; Flags: Precursor gi|52075838|dbj|BAD45446.1| putative FtsH-like protein Pftf precursor [Oryza sativa Japonica Group] gi|125556417|gb|EAZ02023.1| hypothetical protein OsI_24055 [Oryza sativa Indica Group] gi|125598182|gb|EAZ37962.1| hypothetical protein OsJ_22309 [Oryza sativa Japonica Group] Length = 676 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302 >gi|87309826|ref|ZP_01091960.1| cell division protein FtsH [Blastopirellula marina DSM 3645] gi|87287590|gb|EAQ79490.1| cell division protein FtsH [Blastopirellula marina DSM 3645] Length = 651 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF V ++F ++ +VG + +RDL A Sbjct: 207 VPKGVLLIGPPGTGKTLLARAIAGEAGVPFYSVSGSEFIQM-FVGVGASR-VRDLFKTA 263 >gi|317181629|dbj|BAJ59413.1| cell division protein [Helicobacter pylori F57] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|317177101|dbj|BAJ54890.1| cell division protein [Helicobacter pylori F16] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|317008936|gb|ADU79516.1| cell division protein [Helicobacter pylori India7] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|311032289|ref|ZP_07710379.1| cell division protease FtsH [Bacillus sp. m3-13] Length = 327 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 36 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 92 >gi|195623450|gb|ACG33555.1| FtsH6 - Zea mays FtsH protease Length = 677 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302 >gi|297379508|gb|ADI34395.1| cell division protein (ftsH) [Helicobacter pylori v225d] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|282899237|ref|ZP_06307210.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281195873|gb|EFA70797.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 645 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262 >gi|225446693|ref|XP_002282107.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 694 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 264 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 320 >gi|87301887|ref|ZP_01084721.1| cell division protein [Synechococcus sp. WH 5701] gi|87283455|gb|EAQ75410.1| cell division protein [Synechococcus sp. WH 5701] Length = 614 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247 >gi|325000127|ref|ZP_08121239.1| membrane protease FtsH catalytic subunit [Pseudonocardia sp. P1] Length = 846 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 187 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 240 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 241 FVGVGASR-VRDLFEQA 256 >gi|317179319|dbj|BAJ57107.1| cell division protein [Helicobacter pylori F30] Length = 550 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter sulfurreducens KN400] Length = 610 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 610 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL D A Sbjct: 188 VPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFDQA 244 >gi|254822681|ref|ZP_05227682.1| ATP-dependent metallopeptidase HflB [Mycobacterium intracellulare ATCC 13950] Length = 811 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 183 LQNPGRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 236 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 237 FVGVGASR-VRDLFEQA 252 >gi|108804640|ref|YP_644577.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM 9941] gi|123069043|sp|Q1AV13|FTSH_RUBXD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|108765883|gb|ABG04765.1| ATP-dependent metalloprotease FtsH [Rubrobacter xylanophilus DSM 9941] Length = 651 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q+L A + PK LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 208 LENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 261 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 262 FVGVGASR-VRDLFEQA 277 >gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] Length = 652 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 227 MPKGVLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 283 >gi|308184089|ref|YP_003928222.1| cell division protein (ftsH) [Helicobacter pylori SJM180] gi|308060009|gb|ADO01905.1| cell division protein (ftsH) [Helicobacter pylori SJM180] Length = 550 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FIPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|218197842|gb|EEC80269.1| hypothetical protein OsI_22249 [Oryza sativa Indica Group] Length = 681 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D Sbjct: 249 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFD 302 >gi|187830110|ref|NP_001120721.1| filamentation temperature-sensitive H 2B [Zea mays] gi|166093209|gb|ABY82590.1| filamentation temperature-sensitive H 2B [Zea mays] gi|166093213|gb|ABY82592.1| filamentation temperature-sensitive H 2B [Zea mays] Length = 677 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302 >gi|319654928|ref|ZP_08009002.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2] gi|317393353|gb|EFV74117.1| cell division protein ftsH [Bacillus sp. 2_A_57_CT2] Length = 663 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 250 >gi|282896488|ref|ZP_06304508.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281198594|gb|EFA73475.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 645 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262 >gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5] gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5] Length = 670 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 192 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 245 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 246 FVGVGASR-VRDLFEQA 261 >gi|254778989|ref|YP_003057094.1| Cell division protein FtsH; putative signal peptide [Helicobacter pylori B38] gi|254000900|emb|CAX28836.1| Cell division protein FtsH; putative signal peptide [Helicobacter pylori B38] Length = 550 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|225375862|ref|ZP_03753083.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM 16841] gi|225212297|gb|EEG94651.1| hypothetical protein ROSEINA2194_01494 [Roseburia inulinivorans DSM 16841] Length = 598 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 183 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 239 >gi|298491599|ref|YP_003721776.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298233517|gb|ADI64653.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 645 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262 >gi|189425579|ref|YP_001952756.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ] gi|189421838|gb|ACD96236.1| ATP-dependent metalloprotease FtsH [Geobacter lovleyi SZ] Length = 635 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 190 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 242 >gi|115469444|ref|NP_001058321.1| Os06g0669400 [Oryza sativa Japonica Group] gi|113596361|dbj|BAF20235.1| Os06g0669400 [Oryza sativa Japonica Group] Length = 609 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 235 >gi|108805004|ref|YP_644941.1| FtsH-2 peptidase [Rubrobacter xylanophilus DSM 9941] gi|108766247|gb|ABG05129.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Rubrobacter xylanophilus DSM 9941] Length = 627 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q+L A + PK LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 184 LENPQKFQKLGARI-----PKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 237 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 238 FVGVGASR-VRDLFEQA 253 >gi|11465793|ref|NP_053937.1| cell division protein [Porphyra purpurea] gi|1706926|sp|P51327|FTSH_PORPU RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|1276793|gb|AAC08213.1| hypothetical chloroplast ORF 25 [Porphyra purpurea] Length = 628 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|318042673|ref|ZP_07974629.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 614 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 247 >gi|308061639|gb|ADO03527.1| cell division protein (ftsH) [Helicobacter pylori Cuz20] Length = 550 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|332654057|ref|ZP_08419801.1| cell division protein FtsH [Ruminococcaceae bacterium D16] gi|332517143|gb|EGJ46748.1| cell division protein FtsH [Ruminococcaceae bacterium D16] Length = 724 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + GQ +AK + + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 201 RDVAGQDEAKESLQEIIDILHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVA 255 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 256 GEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 285 >gi|261839142|gb|ACX98907.1| cell division protein [Helicobacter pylori 52] Length = 550 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|238923099|ref|YP_002936612.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238874771|gb|ACR74478.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 707 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N R + A L PK LLVGP G GKT +++ +A Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 260 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 287 >gi|237836501|ref|XP_002367548.1| AFG3 ATPase family protein [Toxoplasma gondii ME49] gi|211965212|gb|EEB00408.1| AFG3 ATPase family protein [Toxoplasma gondii ME49] Length = 1188 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK LLVGP G GKT +++ +A AG PF + ++F EI +VG + +R+L D A Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731 Query: 112 NIV 114 + Sbjct: 732 KVA 734 >gi|187830070|ref|NP_001120720.1| LOC100147734 [Zea mays] gi|166093207|gb|ABY82589.1| filamentation temperature-sensitive H 2A [Zea mays] gi|166093211|gb|ABY82591.1| filamentation temperature-sensitive H 2A [Zea mays] Length = 677 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 302 >gi|158319483|ref|YP_001511990.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158139682|gb|ABW17994.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 651 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN + L A + PK IL+VGP G GKT +++ +A AG PF + + F E+ Sbjct: 183 LRNPKKYMDLGARI-----PKGILMVGPPGTGKTYLTKAVAGEAGVPFFSISGSDFVEM- 236 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 237 FVGVGASR-VRDLFEQA 252 >gi|75908451|ref|YP_322747.1| FtsH-2 peptidase [Anabaena variabilis ATCC 29413] gi|75702176|gb|ABA21852.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 645 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262 >gi|52075839|dbj|BAD45447.1| putative chloroplast protease [Oryza sativa Japonica Group] Length = 472 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 42 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 94 >gi|67926179|ref|ZP_00519407.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [Crocosphaera watsonii WH 8501] gi|67851976|gb|EAM47507.1| AAA ATPase, central region:Peptidase M41, FtsH extracellular [Crocosphaera watsonii WH 8501] Length = 354 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|298736767|ref|YP_003729297.1| putative cell division protein [Helicobacter pylori B8] gi|298355961|emb|CBI66833.1| putative cell division protein [Helicobacter pylori B8] Length = 550 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 243 >gi|291523951|emb|CBK89538.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale DSM 17629] Length = 703 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N R + A L PK LLVGP G GKT +++ +A Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 260 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 287 >gi|284929257|ref|YP_003421779.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809701|gb|ADB95398.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 626 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|240144375|ref|ZP_04742976.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82] gi|257203626|gb|EEV01911.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis L1-82] Length = 608 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 254 >gi|168040828|ref|XP_001772895.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675806|gb|EDQ62297.1| predicted protein [Physcomitrella patens subsp. patens] Length = 696 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 266 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 322 >gi|149200008|ref|ZP_01877034.1| probable cell division protein FtsH [Lentisphaera araneosa HTCC2155] gi|149136881|gb|EDM25308.1| probable cell division protein FtsH [Lentisphaera araneosa HTCC2155] Length = 693 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK L+VGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 217 LPKGCLMVGPPGTGKTLLARAIAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFEQA 273 >gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA] gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA] Length = 614 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 241 >gi|303327632|ref|ZP_07358073.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3] gi|302862572|gb|EFL85505.1| cell division protein FtsH [Desulfovibrio sp. 3_1_syn3] Length = 681 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 177 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 229 >gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] Length = 798 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 243 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 244 FVGVGASR-VRDLFEQA 259 >gi|255084099|ref|XP_002508624.1| predicted protein [Micromonas sp. RCC299] gi|226523901|gb|ACO69882.1| predicted protein [Micromonas sp. RCC299] Length = 717 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK +LLVGP G GKT ++R +A AG PF ++F E +G R V + R Sbjct: 247 LPKGLLLVGPPGTGKTMLARAVAGEAGVPFFYTSGSEFEEMFVGVGARRVRDLFRAAKAA 306 Query: 110 AINIV 114 A IV Sbjct: 307 APCIV 311 >gi|221505298|gb|EEE30952.1| paraplegin, putative [Toxoplasma gondii VEG] Length = 1188 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK LLVGP G GKT +++ +A AG PF + ++F EI +VG + +R+L D A Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731 Query: 112 NIV 114 + Sbjct: 732 KVA 734 >gi|221484027|gb|EEE22331.1| peptidase M14 family protein [Toxoplasma gondii GT1] Length = 1188 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK LLVGP G GKT +++ +A AG PF + ++F EI +VG + +R+L D A Sbjct: 674 LPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEI-FVGVGASR-VRELFDEAR 731 Query: 112 NIV 114 + Sbjct: 732 KVA 734 >gi|241747692|ref|XP_002414347.1| 26S proteasome regulatory subunit, putative [Ixodes scapularis] gi|215508201|gb|EEC17655.1| 26S proteasome regulatory subunit, putative [Ixodes scapularis] Length = 365 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 27/42 (64%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ AR AGA FI +EV T+ Y Sbjct: 133 PKGVLLHGPPGCGKTMIAKATAREAGARFINLEVAALTDKWY 174 >gi|254416578|ref|ZP_05030329.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196176544|gb|EDX71557.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 629 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 195 IPKGVLLVGPPGTGKTMLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 251 >gi|218246670|ref|YP_002372041.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257059712|ref|YP_003137600.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218167148|gb|ACK65885.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256589878|gb|ACV00765.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 640 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 219 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 275 >gi|168001910|ref|XP_001753657.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695064|gb|EDQ81409.1| predicted protein [Physcomitrella patens subsp. patens] Length = 647 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R ++ AG PF ++F E+ +VG + +RDL + A Sbjct: 225 IPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 281 >gi|241662241|ref|YP_002980601.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] gi|240864268|gb|ACS61929.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] Length = 605 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|255071009|ref|XP_002507586.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299] gi|226522861|gb|ACO68844.1| aaa-metalloprotease chloroplast precursor [Micromonas sp. RCC299] Length = 619 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 245 >gi|206890631|ref|YP_002249322.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742569|gb|ACI21626.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 740 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + SEL I GQ +A +AV ++ A L++ P L GPTGVGKT Sbjct: 437 KNLESELKSVIFGQDEAVKAVVRVIK------LAKAGLKEPQRPIGCFLFTGPTGVGKTE 490 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA++ G FI+ +++++ E V + Sbjct: 491 LARQLAKILGIGFIRFDMSEYMEKHSVAK 519 >gi|166367879|ref|YP_001660152.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166090252|dbj|BAG04960.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 628 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|159028508|emb|CAO87315.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 628 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|84468324|dbj|BAE71245.1| putative zinc dependent protease [Trifolium pratense] Length = 702 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 272 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGIGASR-VRDLFKKA 328 >gi|84468286|dbj|BAE71226.1| putative zinc dependent protease [Trifolium pratense] Length = 692 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 262 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 318 >gi|17232428|ref|NP_488976.1| cell division protein [Nostoc sp. PCC 7120] gi|17134074|dbj|BAB76635.1| cell division protein [Nostoc sp. PCC 7120] Length = 645 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIEL-FVGVGAAR-VRDLFEQA 262 >gi|296084117|emb|CBI24505.3| unnamed protein product [Vitis vinifera] Length = 104 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 16/89 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASG 302 GIV++DE DKI + I VS EGVQ+ LL ++EG+ ++ S + IA G Sbjct: 14 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVSASIVESGD-----LIAYG 68 Query: 303 AFHVSRPADLLPEIQGRFPVRVHLKSLNK 331 L+PE GRFP+ V L +LN+ Sbjct: 69 ---------LIPEFIGRFPISVSLSALNE 88 >gi|168001607|ref|XP_001753506.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695385|gb|EDQ81729.1| predicted protein [Physcomitrella patens subsp. patens] Length = 688 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 258 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 310 >gi|327481003|gb|AEA84313.1| ATP-dependent metalloprotease FtsH [Pseudomonas stutzeri DSM 4166] Length = 626 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|300790552|ref|YP_003770843.1| cell division protease FtsH [Amycolatopsis mediterranei U32] gi|299800066|gb|ADJ50441.1| cell division protease FtsH [Amycolatopsis mediterranei U32] Length = 799 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 190 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 243 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 244 FVGVGASR-VRDLFEQA 259 >gi|292656040|ref|YP_003535937.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291370819|gb|ADE03046.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 474 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 IL VGP G GKT +SR LA G PF++V+++ T +G +NVE+ Sbjct: 220 KILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 268 >gi|254520537|ref|ZP_05132593.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] gi|226914286|gb|EEH99487.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] Length = 600 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|91775521|ref|YP_545277.1| FtsH-2 peptidase [Methylobacillus flagellatus KT] gi|91709508|gb|ABE49436.1| membrane protease FtsH catalytic subunit [Methylobacillus flagellatus KT] Length = 605 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15] gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter metallireducens GS-15] Length = 619 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK R + LR+ + QQ+ + PK +LLVGP G GKT ++R +A Sbjct: 177 VAGMENAKLELREIVDYLRDPKKFQQIGGKV-----PKGVLLVGPPGTGKTLLARAVAGE 231 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F+ + ++F E+ +VG + +RDL A Sbjct: 232 AGVTFLSITASQFIEM-FVGVGAGR-VRDLFATA 263 >gi|315453661|ref|YP_004073931.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC 49179] gi|3122116|sp|O32617|FTSH_HELFC RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|2660540|emb|CAA05102.1| cell cycle protein [Helicobacter felis] gi|315132713|emb|CBY83341.1| membrane bound zinc metallopeptidase [Helicobacter felis ATCC 49179] Length = 638 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL D+A Sbjct: 208 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEM-FVGLGASR-VRDLFDIA 264 >gi|331699843|ref|YP_004336082.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans CB1190] gi|326954532|gb|AEA28229.1| ATP-dependent metalloprotease FtsH [Pseudonocardia dioxanivorans CB1190] Length = 818 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPGRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|260437757|ref|ZP_05791573.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM 2876] gi|292809779|gb|EFF68984.1| ATP-dependent metalloprotease FtsH [Butyrivibrio crossotus DSM 2876] Length = 618 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + +L A + PK ++LVGP G GKT I++ +A AG PF + + F E+ Sbjct: 193 LKNPGKYVELGARI-----PKGVILVGPPGTGKTLIAKAVAGEAGVPFFSISGSDFVEM- 246 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 247 FVGVGASR-VRDLFEEA 262 >gi|291295836|ref|YP_003507234.1| ATP-dependent Clp protease ATP-binding subunit clpA [Meiothermus ruber DSM 1279] gi|290470795|gb|ADD28214.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus ruber DSM 1279] Length = 746 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R + GQ A VA A++ A LRD P + L GPTGVGKT ++R+L Sbjct: 454 ELKRAVFGQDRAVEEVASAIKLAR------AGLRDPQKPMGSYLFAGPTGVGKTELARQL 507 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 A G P ++ +++++ E GYVG + ++ D V Sbjct: 508 AASLGVPLLRFDMSEYMEKHSVSRLIGAPPGYVGFDQGGLLTDAV 552 >gi|315452779|ref|YP_004073049.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179] gi|315131831|emb|CBY82459.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179] Length = 560 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L L PK +LLVGP GVGKT I++ LA A PF + F +I Sbjct: 181 LKNPKKYQDLKIKL-----PKGVLLVGPPGVGKTMIAKALASEAKVPFFYHSGSAFVQI- 234 Query: 94 YVGRNVEQI 102 YVG +++ Sbjct: 235 YVGVGAKRV 243 >gi|300120569|emb|CBK20123.2| unnamed protein product [Blastocystis hominis] Length = 366 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ LA+ +G PFI ++++ + Y G + +++IR L + Sbjct: 122 LPKGVLLYGPPGTGKTMLAKALAKESGVPFINLQLSTLMNM-YFGES-QKLIRALFSMC 178 >gi|158335287|ref|YP_001516459.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158305528|gb|ABW27145.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 630 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263 >gi|83816138|ref|YP_445932.1| cell division protein FtsH [Salinibacter ruber DSM 13855] gi|294507843|ref|YP_003571901.1| cell division protein [Salinibacter ruber M8] gi|310943098|sp|D5HA94|FTSH2_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|83757532|gb|ABC45645.1| cell division protein FtsH [Salinibacter ruber DSM 13855] gi|294344171|emb|CBH24949.1| cell division protein [Salinibacter ruber M8] Length = 683 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A APF V + F E+ +VG + +RD+ A Sbjct: 220 VPKGVLLVGPPGTGKTLLARAVAGEANAPFFSVSGSDFMEM-FVGVGASR-VRDMFSEA 276 >gi|186682396|ref|YP_001865592.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464848|gb|ACC80649.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 621 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGSSR-VRDLFEQA 257 >gi|332297151|ref|YP_004439073.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM 12168] gi|332180254|gb|AEE15942.1| ATP-dependent metalloprotease FtsH [Treponema brennaborense DSM 12168] Length = 660 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF K+ + F E+ +VG + +RDL A Sbjct: 239 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFKISGSDFVEM-FVGVGASR-VRDLFKQA 295 >gi|313125289|ref|YP_004035553.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312291654|gb|ADQ66114.1| AAA+ family ATPase [Halogeometricum borinquense DSM 11551] Length = 456 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 IL VGP G GKT +SR LA G PF++V+++ T +G +NVE+ Sbjct: 221 KILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 269 >gi|160936160|ref|ZP_02083533.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC BAA-613] gi|158440970|gb|EDP18694.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC BAA-613] Length = 625 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRYII-----GQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + I G+++AK A + L N + + A+L PK Sbjct: 157 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 211 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 212 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 265 >gi|94986632|ref|YP_594565.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00] gi|94730881|emb|CAJ54244.1| ATP-dependent Zn proteases [Lawsonia intracellularis PHE/MN1-00] Length = 635 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238 >gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 627 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260 >gi|317484643|ref|ZP_07943546.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6] gi|316924117|gb|EFV45300.1| ATP-dependent metallopeptidase HflB [Bilophila wadsworthia 3_1_6] Length = 650 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238 >gi|77918603|ref|YP_356418.1| ATP-dependent zinc protease/ cell division protein [Pelobacter carbinolicus DSM 2380] gi|77544686|gb|ABA88248.1| membrane protease FtsH catalytic subunit [Pelobacter carbinolicus DSM 2380] Length = 616 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT + R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLGRAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|11467752|ref|NP_050804.1| cell division protein [Guillardia theta] gi|6016057|sp|O78516|FTSH_GUITH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|3603077|gb|AAC35738.1| hypothetical chloroplast RF25 [Guillardia theta] Length = 631 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|121603307|ref|YP_980636.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans CJ2] gi|120592276|gb|ABM35715.1| membrane protease FtsH catalytic subunit [Polaromonas naphthalenivorans CJ2] Length = 618 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250 >gi|113476779|ref|YP_722840.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|122964671|sp|Q10ZF7|FTSH_TRIEI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|110167827|gb|ABG52367.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 667 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 235 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 291 >gi|323697697|ref|ZP_08109609.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio sp. ND132] gi|323457629|gb|EGB13494.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio desulfuricans ND132] Length = 773 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S+L + GQ +A A+A +++ R R A +R P + LL GPTGVGKT Sbjct: 455 KSLESDLKAVVFGQDEAVAALAKSIK-RSR-----AGMRQAGRPVGSFLLTGPTGVGKTE 508 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA++ G F++ +++++ E V R Sbjct: 509 LARQLAKVLGIGFLRFDMSEYMEKHAVAR 537 >gi|302794532|ref|XP_002979030.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii] gi|300153348|gb|EFJ19987.1| hypothetical protein SELMODRAFT_152929 [Selaginella moellendorffii] Length = 595 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 165 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEV-FVGIGASR-VRDL 217 >gi|295696093|ref|YP_003589331.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] gi|295411695|gb|ADG06187.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912] Length = 536 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 MPK ++L GP G GKT ++R +A AG F+ ++F E YVG ++ IRDL D Sbjct: 139 MPKGVILYGPPGTGKTLLARAVAGEAGVEFVACSGSQFVE-QYVGLGAKK-IRDLFDQVR 196 Query: 112 NIVRES 117 I R + Sbjct: 197 RIGRPA 202 >gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] Length = 671 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 191 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 245 FVGVGASR-VRDLFEQA 260 >gi|170076977|ref|YP_001733615.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. PCC 7002] gi|169884646|gb|ACA98359.1| ATP-dependent metalloprotease, FtsH family [Synechococcus sp. PCC 7002] Length = 628 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|46579689|ref|YP_010497.1| cell division protein FtsH [Desulfovibrio vulgaris str. Hildenborough] gi|120602831|ref|YP_967231.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris DP4] gi|46449104|gb|AAS95756.1| cell division protein FtsH [Desulfovibrio vulgaris str. Hildenborough] gi|120563060|gb|ABM28804.1| membrane protease FtsH catalytic subunit [Desulfovibrio vulgaris DP4] gi|311233484|gb|ADP86338.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris RCH1] Length = 656 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|320536058|ref|ZP_08036116.1| phage putative tail component protein [Treponema phagedenis F0421] gi|320147108|gb|EFW38666.1| phage putative tail component protein [Treponema phagedenis F0421] Length = 678 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF ++ + F E+ +VG + +RDL A Sbjct: 237 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDLFKQA 293 >gi|315929039|gb|EFV08279.1| ftsH domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 456 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L+VGP GVGKT I++ +A A PF + F EI YVG ++ +R+L A Sbjct: 102 MPKGVLMVGPPGVGKTLIAKAVAGEAEVPFFYQSGSSFVEI-YVGMGAKR-VRELFSKA 158 >gi|302806390|ref|XP_002984945.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii] gi|300147531|gb|EFJ14195.1| hypothetical protein SELMODRAFT_156952 [Selaginella moellendorffii] Length = 595 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 165 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEV-FVGIGASR-VRDL 217 >gi|282601158|ref|ZP_05980957.2| negative regulator of genetic competence ClpC/MecB [Subdoligranulum variabile DSM 15176] gi|282570064|gb|EFB75599.1| negative regulator of genetic competence ClpC/MecB [Subdoligranulum variabile DSM 15176] Length = 750 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 38/281 (13%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 L +IIGQ +A AVA A++ R R ADL P + + VGPTGVGKT + ++LA Sbjct: 458 LKAHIIGQDEAVHAVAGAIK-RAR-----ADLSGRHRPASFIFVGPTGVGKTELVKQLAN 511 Query: 76 L---AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 P I ++++++ E V R L+ V ++ E+ + Sbjct: 512 QLFDTVDPLISIDMSEYMEKYAVSR--------LIGSPPGYVGYDEAGQLTEKVRRHPYS 563 Query: 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNL 192 +L + K A + + + L +G+I+D + + D SN I ++ G Sbjct: 564 VVLFDEIEK-AHPDVMNILLQILDEGKINDAQ------GRTVDFSNTVICMTSNAG---- 612 Query: 193 SELFSKVMGSGRKKKIRMSVQ--KCYPELMRDES-DRLIDMDTVHRDSIQMVENYGIVFL 249 S S G G+K ++ + + K E +R E R+ ++ T H S + +E + L Sbjct: 613 STDQSGATGFGKKLEVASADKSLKALQEFLRPEFIGRVDEIITFHPLSQENLEKIAALML 672 Query: 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGS 290 DE+ + + +GI ++ + Q L +V S STKYG+ Sbjct: 673 DEYKPGL---TNHGITLTYD--QPALAAIVAQS--STKYGA 706 >gi|220904981|ref|YP_002480293.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869280|gb|ACL49615.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 676 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 238 >gi|160943001|ref|ZP_02090239.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii M21/2] gi|158445695|gb|EDP22698.1| hypothetical protein FAEPRAM212_00478 [Faecalibacterium prausnitzii M21/2] Length = 616 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255 >gi|123966164|ref|YP_001011245.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515] gi|123200530|gb|ABM72138.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9515] Length = 584 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG + +RDL Sbjct: 167 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVEL-FVGVGASR-VRDL 219 >gi|123430779|ref|XP_001307955.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase [Trichomonas vaginalis G3] gi|121889610|gb|EAX95025.1| Clan MA, family M41, FtsH endopeptidase-like metallopeptidase [Trichomonas vaginalis G3] Length = 533 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 77 IPKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFESA 133 >gi|49246395|gb|AAT58329.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246409|gb|AAT58336.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246411|gb|AAT58337.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246415|gb|AAT58339.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 152 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 52 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108 >gi|212703544|ref|ZP_03311672.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098] gi|212673044|gb|EEB33527.1| hypothetical protein DESPIG_01589 [Desulfovibrio piger ATCC 29098] Length = 668 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 189 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 241 >gi|167770587|ref|ZP_02442640.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM 17241] gi|167667182|gb|EDS11312.1| hypothetical protein ANACOL_01933 [Anaerotruncus colihominis DSM 17241] Length = 603 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK ++A L N + +++ A MPK +LLVGP G GKT +++ +A Sbjct: 167 VAGEDEAKESLAEIVDYLHNPDKYREIGAS-----MPKGVLLVGPPGTGKTMLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 222 ASVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 253 >gi|126660834|ref|ZP_01731928.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126617885|gb|EAZ88660.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|49246399|gb|AAT58331.1| FtsH-like protein [Aegilops tauschii] gi|49246407|gb|AAT58335.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246421|gb|AAT58342.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246457|gb|AAT58360.1| FtsH-like protein [Triticum urartu] Length = 151 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 52 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108 >gi|332704382|ref|ZP_08424470.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] gi|332554531|gb|EGJ51575.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] Length = 671 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 239 >gi|313889140|ref|ZP_07822796.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844880|gb|EFR32285.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] Length = 652 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTYLSKAVAGEAGVPFFIMSGSDFVEM-FVGVGASR-VRDLFESA 252 >gi|295103468|emb|CBL01012.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii SL3/3] Length = 616 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255 >gi|282897116|ref|ZP_06305118.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281197768|gb|EFA72662.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|224284462|gb|ACN39965.1| unknown [Picea sitchensis] Length = 695 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 267 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGIGASR-VRDLFKKA 323 >gi|115374427|ref|ZP_01461709.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1] gi|115368519|gb|EAU67472.1| peptidase M41, FtsH [Stigmatella aurantiaca DW4/3-1] Length = 671 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL A Sbjct: 221 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFGQA 277 >gi|49246405|gb|AAT58334.1| FtsH-like protein [Triticum urartu] gi|49246419|gb|AAT58341.1| FtsH-like protein [Aegilops tauschii] gi|49246423|gb|AAT58343.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246425|gb|AAT58344.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246437|gb|AAT58350.1| FtsH-like protein [Triticum urartu] gi|49246441|gb|AAT58352.1| FtsH-like protein [Triticum urartu] gi|49246443|gb|AAT58353.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246445|gb|AAT58354.1| FtsH-like protein [Triticum urartu] gi|49246451|gb|AAT58357.1| FtsH-like protein [Aegilops tauschii] gi|49246455|gb|AAT58359.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 150 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 52 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108 >gi|303240182|ref|ZP_07326702.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] gi|302592273|gb|EFL62001.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] Length = 604 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL D A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFDQA 250 >gi|258651092|ref|YP_003200248.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM 44233] gi|258554317|gb|ACV77259.1| ATP-dependent metalloprotease FtsH [Nakamurella multipartita DSM 44233] Length = 760 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 183 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 236 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 237 FVGVGASR-VRDLFEQA 252 >gi|49246397|gb|AAT58330.1| FtsH-like protein [Lophopyrum elongatum] gi|49246413|gb|AAT58338.1| FtsH-like protein [Triticum urartu] gi|49246429|gb|AAT58346.1| FtsH-like protein [Triticum urartu] gi|49246431|gb|AAT58347.1| FtsH-like protein [Aegilops tauschii] gi|49246433|gb|AAT58348.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246447|gb|AAT58355.1| FtsH-like protein [Triticum monococcum] gi|49246449|gb|AAT58356.1| FtsH-like protein [Triticum monococcum] gi|49246453|gb|AAT58358.1| FtsH-like protein [Aegilops tauschii] gi|49246459|gb|AAT58361.1| FtsH-like protein [Aegilops tauschii] Length = 151 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 53 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109 >gi|78356558|ref|YP_388007.1| FtsH peptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218963|gb|ABB38312.1| membrane protease FtsH catalytic subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 665 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|24216518|ref|NP_713999.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str. 56601] gi|45656331|ref|YP_000417.1| cell division protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197827|gb|AAN51017.1| ATP-dependent Zn protease [Leptospira interrogans serovar Lai str. 56601] gi|45599565|gb|AAS69054.1| cell division protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 655 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +P +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266 >gi|260587358|ref|ZP_05853271.1| cell division protein FtsH [Blautia hansenii DSM 20583] gi|260542225|gb|EEX22794.1| cell division protein FtsH [Blautia hansenii DSM 20583] Length = 567 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 158 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 214 >gi|197302420|ref|ZP_03167475.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC 29176] gi|197298318|gb|EDY32863.1| hypothetical protein RUMLAC_01148 [Ruminococcus lactaris ATCC 29176] Length = 700 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 237 VAGQDEAKESLQEVVDFLHNPEKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 291 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ YVG + +RDL A Sbjct: 292 AGVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 323 >gi|172036185|ref|YP_001802686.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171697639|gb|ACB50620.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|49246401|gb|AAT58332.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246403|gb|AAT58333.1| FtsH-like protein [Triticum monococcum] gi|49246417|gb|AAT58340.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] gi|49246435|gb|AAT58349.1| FtsH-like protein [Triticum monococcum] Length = 152 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 53 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109 >gi|331083658|ref|ZP_08332769.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403869|gb|EGG83421.1| hypothetical protein HMPREF0992_01693 [Lachnospiraceae bacterium 6_1_63FAA] Length = 603 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 250 >gi|315124494|ref|YP_004066498.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018216|gb|ADT66309.1| putative membrane bound ATPase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 233 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 27/41 (65%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 MPK +L+VGP GVGKT I++ +A AG PF + F EI Sbjct: 184 MPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEI 224 >gi|282901547|ref|ZP_06309469.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281193590|gb|EFA68565.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|159905310|ref|YP_001548972.1| ATPase central domain-containing protein [Methanococcus maripaludis C6] gi|159886803|gb|ABX01740.1| AAA ATPase central domain protein [Methanococcus maripaludis C6] Length = 371 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IGQ DAK+ I ++ ++ E PKNIL GP G GKT ++R LA Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGPPGTGKTMLARALATETDV 182 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P ++ T+ IG +VG +QI Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204 >gi|186681813|ref|YP_001865009.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464265|gb|ACC80066.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium 1_7_47_FAA] gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium 1_7_47FAA] Length = 625 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRYII-----GQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + I G+++AK A + L N + + A+L PK Sbjct: 159 MTFGKSNAKIYAENETGITFADVAGEEEAKDALKEIVDFLHNPQKYADIGANL-----PK 213 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 214 GALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 267 >gi|300868425|ref|ZP_07113046.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300333559|emb|CBN58234.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|302818219|ref|XP_002990783.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii] gi|300141344|gb|EFJ08056.1| hypothetical protein SELMODRAFT_185567 [Selaginella moellendorffii] Length = 691 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 312 >gi|218885163|ref|YP_002434484.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756117|gb|ACL07016.1| ATP-dependent metalloprotease FtsH [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 671 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|254422833|ref|ZP_05036551.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196190322|gb|EDX85286.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 626 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFIEM-FVGVGSSR-VRDLFEQA 250 >gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|108760095|ref|YP_632507.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622] gi|108463975|gb|ABF89160.1| ATP-dependent metalloprotease FtsH [Myxococcus xanthus DK 1622] Length = 674 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL A Sbjct: 222 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFAQAT 279 Query: 112 N 112 + Sbjct: 280 S 280 >gi|49246427|gb|AAT58345.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 153 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 53 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 109 >gi|302530789|ref|ZP_07283131.1| cell division protein [Streptomyces sp. AA4] gi|302439684|gb|EFL11500.1| cell division protein [Streptomyces sp. AA4] Length = 667 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 59 LQNPARYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM- 112 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 113 FVGVGASR-VRDLFEQA 128 >gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] Length = 662 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK +++ L N + +++ A + PK +LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKDSLSEIVDFLHNPGKYKEIGAKV-----PKGVLLVGPPGTGKTLMAQAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] Length = 669 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 191 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 244 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 245 FVGVGASR-VRDLFEQA 260 >gi|116327328|ref|YP_797048.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120072|gb|ABJ78115.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 652 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +P +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266 >gi|75909397|ref|YP_323693.1| FtsH peptidase [Anabaena variabilis ATCC 29413] gi|75703122|gb|ABA22798.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|30684767|ref|NP_850156.1| VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] gi|75318709|sp|O80860|FTSH2_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 2, chloroplastic; Short=AtFTSH2; AltName: Full=Protein VARIEGATED 2; Flags: Precursor gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent protease [Arabidopsis thaliana] gi|3201633|gb|AAC20729.1| FtsH protease (VAR2) [Arabidopsis thaliana] gi|330253372|gb|AEC08466.1| cell division protease ftsH-2 [Arabidopsis thaliana] Length = 695 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315 >gi|17231134|ref|NP_487682.1| cell division protein [Nostoc sp. PCC 7120] gi|17132775|dbj|BAB75341.1| cell division protein [Nostoc sp. PCC 7120] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|307150315|ref|YP_003885699.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306980543|gb|ADN12424.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] Length = 671 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 193 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 246 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 247 FVGVGASR-VRDLFEQA 262 >gi|117927369|ref|YP_871920.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus 11B] gi|310943112|sp|A0LR74|FTSH_ACIC1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|117647832|gb|ABK51934.1| ATP-dependent metalloprotease FtsH [Acidothermus cellulolyticus 11B] Length = 666 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A AG PF+ V + F E+ +VG + +RDL + A Sbjct: 211 IPRGVLMVGPPGTGKTLMARAVAGEAGVPFLSVTGSSFVEM-FVGVGASR-VRDLFEEA 267 >gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] Length = 668 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 252 >gi|312282051|dbj|BAJ33891.1| unnamed protein product [Thellungiella halophila] Length = 693 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 258 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 314 >gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] Length = 765 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQAR 276 Query: 112 N 112 N Sbjct: 277 N 277 >gi|257438589|ref|ZP_05614344.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] gi|257198958|gb|EEU97242.1| cell division protein FtsH [Faecalibacterium prausnitzii A2-165] Length = 608 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 255 >gi|224141399|ref|XP_002324060.1| predicted protein [Populus trichocarpa] gi|222867062|gb|EEF04193.1| predicted protein [Populus trichocarpa] Length = 677 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 247 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 303 >gi|126437720|ref|YP_001073411.1| Mername-AA223 peptidase [Mycobacterium sp. JLS] gi|126237520|gb|ABO00921.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. JLS] Length = 784 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 236 FVGVGASR-VRDMFEQA 251 >gi|49246439|gb|AAT58351.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 154 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 54 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 110 >gi|54022362|ref|YP_116604.1| putative cell division protein [Nocardia farcinica IFM 10152] gi|54013870|dbj|BAD55240.1| putative cell division protein [Nocardia farcinica IFM 10152] Length = 796 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 187 LQNPVRYQALGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 240 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 241 FVGVGASR-VRDLFEQA 256 >gi|298345494|ref|YP_003718181.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063] gi|304391050|ref|ZP_07373002.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235555|gb|ADI66687.1| ATP-dependent metalloprotease FtsH [Mobiluncus curtisii ATCC 43063] gi|304325933|gb|EFL93179.1| cell division protein FtsH [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 759 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275 >gi|207092232|ref|ZP_03240019.1| cell division protein [Helicobacter pylori HPKX_438_AG0C1] Length = 286 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG +++ Sbjct: 201 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVGAGAKKV 251 >gi|166033186|ref|ZP_02236015.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC 27755] gi|166027543|gb|EDR46300.1| hypothetical protein DORFOR_02908 [Dorea formicigenerans ATCC 27755] Length = 612 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 256 >gi|119492884|ref|ZP_01623933.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106] gi|119452912|gb|EAW34085.1| ATP-dependent Zn protease [Lyngbya sp. PCC 8106] Length = 618 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 243 >gi|116332057|ref|YP_801775.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280211|sp|Q04Q03|FTSH_LEPBJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|116125746|gb|ABJ77017.1| ATP-dependent Zn protease [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 652 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +P +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL D Sbjct: 212 IPTGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFD 266 >gi|49246461|gb|AAT58362.1| FtsH-like protein [Hordeum vulgare subsp. spontaneum] Length = 152 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 52 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 108 >gi|42525986|ref|NP_971084.1| cell division protein FtsH [Treponema denticola ATCC 35405] gi|41816036|gb|AAS10965.1| cell division protein FtsH [Treponema denticola ATCC 35405] gi|325475667|gb|EGC78843.1| cell division protein FtsH [Treponema denticola F0402] Length = 658 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A AG PF ++ + F E+ +VG + +RDL Sbjct: 237 IPRGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDL 289 >gi|113477982|ref|YP_724043.1| FtsH peptidase [Trichodesmium erythraeum IMS101] gi|110169030|gb|ABG53570.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Trichodesmium erythraeum IMS101] Length = 628 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|326386213|ref|ZP_08207837.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM 19370] gi|326209438|gb|EGD60231.1| ATP dependent Clp protease [Novosphingobium nitrogenifigens DSM 19370] Length = 784 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ A +A A++ A LRD P + L GPTGVGKT ++R L Sbjct: 466 DLKRMVFGQDKAIEVLASAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARSL 519 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 A + G P + +++++ E GYVG + ++ D +D + V Sbjct: 520 ANIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHCV 571 >gi|222424645|dbj|BAH20277.1| AT2G30950 [Arabidopsis thaliana] Length = 695 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315 >gi|254410318|ref|ZP_05024097.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] gi|196182524|gb|EDX77509.1| ATP-dependent metallopeptidase HflB subfamily [Microcoleus chthonoplastes PCC 7420] Length = 627 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260 >gi|218779932|ref|YP_002431250.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfatibacillum alkenivorans AK-01] gi|218761316|gb|ACL03782.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfatibacillum alkenivorans AK-01] Length = 744 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 18/106 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 S+L + + GQ +A + VA A++ R R A L + P + L GPTGVGKT ++++ Sbjct: 452 SDLKKMVFGQDEAVQTVATAIK-RSR-----AGLASQERPVGSFLFTGPTGVGKTEVAKQ 505 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 LA+ G F++ +++++ E GYVG + ++ D V Sbjct: 506 LAQTLGIAFLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDAV 551 >gi|310821962|ref|YP_003954320.1| ATP-dependent metalloprotease ftsh [Stigmatella aurantiaca DW4/3-1] gi|309395034|gb|ADO72493.1| ATP-dependent metalloprotease FtsH [Stigmatella aurantiaca DW4/3-1] Length = 683 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ +VG + +RDL A Sbjct: 233 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDLFGQA 289 >gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 631 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263 >gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii ACS-065-V-Col13] Length = 651 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK +++ L N + +++ A + PK +LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKDSLSEIVDFLHNPGKYKEIGAKV-----PKGVLLVGPPGTGKTLMAQAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|302388370|ref|YP_003824192.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] gi|302198998|gb|ADL06569.1| ATP-dependent metalloprotease FtsH [Clostridium saccharolyticum WM1] Length = 606 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 192 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 246 >gi|198424141|ref|XP_002124796.1| PREDICTED: similar to paraplegin [Ciona intestinalis] Length = 743 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109 MPK LL GP GVGKT +++ +A +G PFI + F E+ G + V Q+ + + Sbjct: 305 MPKGCLLTGPPGVGKTLLAKAVASESGVPFIPKSGSDFVELIGGLGAKRVRQLFENARKM 364 Query: 110 AINIV 114 A IV Sbjct: 365 APCIV 369 >gi|220909618|ref|YP_002484929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219866229|gb|ACL46568.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 632 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 209 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 265 >gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 598 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 184 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASR-VRDL 236 >gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2] gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus maripaludis S2] Length = 371 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 ++GQ DAK+ I ++ +L E PKNIL GP G GKT ++R LA Sbjct: 128 VVGQIDAKKKCKIVIKYLEN-----PELFGEWAPKNILFYGPPGTGKTMLARALATETDV 182 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P ++ T+ IG +VG +QI Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204 >gi|24987367|pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R ++ A + PK +LLVGP GVGKT ++R +A A PFI + F E+ Sbjct: 59 LKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM- 112 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 113 FVGVGAAR-VRDLFETA 128 >gi|296392854|ref|YP_003657738.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM 44985] gi|296180001|gb|ADG96907.1| ATP-dependent metalloprotease FtsH [Segniliparus rotundus DSM 44985] Length = 698 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 189 LQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 243 FVGVGASR-VRDLFEQA 258 >gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca] Length = 634 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262 >gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] Length = 765 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQAR 276 Query: 112 N 112 N Sbjct: 277 N 277 >gi|119493933|ref|ZP_01624495.1| cell division protein [Lyngbya sp. PCC 8106] gi|119452331|gb|EAW33525.1| cell division protein [Lyngbya sp. PCC 8106] Length = 628 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri] gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri] Length = 966 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P +LL GP G GKT ++R +A AG PF T+F E+ +VG + IR+L D A Sbjct: 400 IPAGVLLCGPPGTGKTLLARCVAGEAGVPFFSCAGTEFMEM-FVGVGAAR-IRNLFDQAK 457 Query: 112 NIV 114 + Sbjct: 458 KVA 460 >gi|311893429|dbj|BAJ25846.1| ATP-dependent zinc metalloprotease ThFtsH8 [Eutrema salsugineum] Length = 693 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 258 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 314 >gi|255281636|ref|ZP_05346191.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255267703|gb|EET60908.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 626 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK A + L N + Q++ A MPK LLVGP G GKT +++ +A Sbjct: 183 VAGEDEAKEALMEIVNYLHNPEKYQKIGAK-----MPKGALLVGPPGTGKTLLAKAVAGE 237 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ + G + +RDL A Sbjct: 238 ARVPFFSISGSEFVEL-FAGMGAAK-VRDLFKQA 269 >gi|225571155|ref|ZP_03780153.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM 15053] gi|225159986|gb|EEG72605.1| hypothetical protein CLOHYLEM_07243 [Clostridium hylemonae DSM 15053] Length = 615 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 256 >gi|222424701|dbj|BAH20304.1| AT2G30950 [Arabidopsis thaliana] Length = 586 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 150 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 202 >gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 628 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 510 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 87 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 143 >gi|295102377|emb|CBK99922.1| ATP-dependent metalloprotease FtsH [Faecalibacterium prausnitzii L2-6] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 198 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|303287446|ref|XP_003063012.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455648|gb|EEH52951.1| predicted protein [Micromonas pusilla CCMP1545] Length = 284 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P LLVGP G GKT +++ +A AG PF V ++F E+ +VGR ++ Sbjct: 140 LPTGCLLVGPPGTGKTLLAKAVAGEAGVPFFSVAASEFVEL-FVGRGAARV 189 >gi|209523843|ref|ZP_03272396.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209495875|gb|EDZ96177.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 629 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262 >gi|254460098|ref|ZP_05073514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacterales bacterium HTCC2083] gi|206676687|gb|EDZ41174.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacteraceae bacterium HTCC2083] Length = 775 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 462 KDLEASLKRVVFGQDDAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 516 VAKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572 >gi|170593977|ref|XP_001901740.1| AAA ATPase [Brugia malayi] gi|158590684|gb|EDP29299.1| AAA ATPase, putative [Brugia malayi] Length = 353 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 30 VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89 + + +RN +++ L ++L PK +LL GP G GKT +++ +AR A A FI ++V+ Sbjct: 101 IPLKIRNIYKKLALSSNLLSP--PKGVLLYGPPGCGKTLLAKVIARAANARFINLQVSSL 158 Query: 90 TEIGY 94 + Y Sbjct: 159 CDKWY 163 >gi|291569654|dbj|BAI91926.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 629 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262 >gi|291568483|dbj|BAI90755.1| ClpB protein [Arthrospira platensis NIES-39] Length = 928 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L R +IGQQ A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 603 QLESHLHRRVIGQQQAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 656 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA + I+++++++ E V R V Sbjct: 657 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 689 >gi|146098803|ref|XP_001468475.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial ATP-dependent zinc metallopeptidase [Leishmania infantum] gi|134072843|emb|CAM71559.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania infantum JPCM5] gi|322502510|emb|CBZ37593.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 623 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58 K F F VS + + G +AK V L++ R Q L A L PK +LL Sbjct: 157 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVLL 211 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 GP GVGKT +++ +A A PF+ ++F E+ YVG ++ +R+L A N Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264 >gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei] gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei] Length = 735 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ VG+ + +RDL D A Sbjct: 276 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEV-LVGQGARR-VRDLFDKA 332 >gi|301061956|ref|ZP_07202683.1| cell division protease FtsH [delta proteobacterium NaphS2] gi|300443939|gb|EFK07977.1| cell division protease FtsH [delta proteobacterium NaphS2] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A +G PF + ++F E+ +VG + +RDL A Sbjct: 189 MPKGVLLVGPPGTGKTLLAKAVAGESGVPFFSLSGSEFVEM-FVGLGAAR-VRDLFTQA 245 >gi|284053803|ref|ZP_06384013.1| endopeptidase Clp ATP-binding chain [Arthrospira platensis str. Paraca] Length = 320 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L R +IGQQ A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 194 QLESHLHRRVIGQQQAVEAVSAAIR-RAR-----AGMKDPGRPIGSFLFMGPTGVGKTEL 247 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA + I+++++++ E V R V Sbjct: 248 ARALAEFLFDSEEAMIRIDMSEYMEKHAVSRLV 280 >gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex] Length = 697 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG P+ +F EI VG+ + +RDL A Sbjct: 290 LPKGVLLVGPPGTGKTLLARAVAGEAGVPYFHAAGPEFDEI-LVGQGARR-VRDLFKAA 346 >gi|312282199|dbj|BAJ33965.1| unnamed protein product [Thellungiella halophila] Length = 697 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 261 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 317 >gi|297822823|ref|XP_002879294.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp. lyrata] gi|297325133|gb|EFH55553.1| hypothetical protein ARALYDRAFT_482018 [Arabidopsis lyrata subsp. lyrata] Length = 695 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 259 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 315 >gi|288870055|ref|ZP_06112759.2| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM 13479] gi|288868612|gb|EFD00911.1| ATP-dependent metalloprotease FtsH [Clostridium hathewayi DSM 13479] Length = 606 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 194 IPKGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 248 >gi|197301564|ref|ZP_03166637.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC 29176] gi|197299294|gb|EDY33821.1| hypothetical protein RUMLAC_00290 [Ruminococcus lactaris ATCC 29176] Length = 1169 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IG ++AK +A + + + +PK +LL GP G GKT ++R +A + Sbjct: 737 VIGAENAK--TELAWFTEFLKNPKKYSMEGRRLPKGVLLYGPPGTGKTMLARAMAGESDV 794 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIR 104 F++ T+F YVG++ E I R Sbjct: 795 AFLETSATQFMN-SYVGKSEENIRR 818 >gi|22298276|ref|NP_681523.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22294455|dbj|BAC08285.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 631 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 208 IPKGVLLVGPPGTGKTMLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 260 >gi|303249374|ref|ZP_07335600.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio fructosovorans JJ] gi|302489212|gb|EFL49177.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio fructosovorans JJ] Length = 757 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 9/86 (10%) Query: 14 SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71 EL I GQ A A+A A LR+R A L ++ P + LL GPTGVGKT +++ Sbjct: 444 GELKDLIFGQDQAVDAIAKAILRSR-------AGLANDCKPTGSFLLAGPTGVGKTEMAK 496 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGR 97 +LA + G F++ +++++ E V R Sbjct: 497 QLAAVLGINFVRFDMSEYMEKHAVAR 522 >gi|254420804|ref|ZP_05034528.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas sp. BAL3] gi|196186981|gb|EDX81957.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas sp. BAL3] Length = 767 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66 S RE+ +L R + GQ+ A V+ A++ A LRD P + L GPTGVGK Sbjct: 455 SLRELEVDLKRAVFGQEQAIEQVSAAMK------LARAGLRDPNKPIGSFLFSGPTGVGK 508 Query: 67 TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 T ++++LA G + +++++ E GYVG + ++ D VD Sbjct: 509 TEVAKQLASTLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 561 >gi|167759637|ref|ZP_02431764.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704] gi|167662763|gb|EDS06893.1| hypothetical protein CLOSCI_01995 [Clostridium scindens ATCC 35704] Length = 614 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 255 >gi|46199430|ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27] gi|55981461|ref|YP_144758.1| cell division protein FtsH [Thermus thermophilus HB8] gi|81363931|sp|Q5SI82|FTSH_THET8 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|46197056|gb|AAS81470.1| cell division protein ftsH [Thermus thermophilus HB27] gi|55772874|dbj|BAD71315.1| cell division protein FtsH [Thermus thermophilus HB8] Length = 624 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP GVGKT ++R +A A PFI + F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244 >gi|37522147|ref|NP_925524.1| cell division protein [Gloeobacter violaceus PCC 7421] gi|35213147|dbj|BAC90519.1| cell division protein [Gloeobacter violaceus PCC 7421] Length = 630 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 262 >gi|24987364|pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus gi|24987365|pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp From Thermus Thermophilus gi|24987366|pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From Thermus Thermophilus Length = 254 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R ++ A + PK +LLVGP GVGKT ++R +A A PFI + F E+ Sbjct: 35 LKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM- 88 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 89 FVGVGAAR-VRDLFETA 104 >gi|315656174|ref|ZP_07909065.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493176|gb|EFU82776.1| cell division protein FtsH [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 759 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275 >gi|302785487|ref|XP_002974515.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii] gi|300158113|gb|EFJ24737.1| hypothetical protein SELMODRAFT_149856 [Selaginella moellendorffii] Length = 597 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 166 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 218 >gi|296415338|ref|XP_002837347.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633211|emb|CAZ81538.1| unnamed protein product [Tuber melanosporum] Length = 819 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT ++R +A AG PF + ++F E+ YVG +++ Sbjct: 377 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEV-YVGVGAKRV 426 >gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] Length = 671 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 199 LQNPAKYQALGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 252 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 253 FVGVGASR-VRDLFQQA 268 >gi|255084293|ref|XP_002508721.1| predicted protein [Micromonas sp. RCC299] gi|226523998|gb|ACO69979.1| predicted protein [Micromonas sp. RCC299] Length = 474 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P LLVGP G GKT +++ +A AG PF V ++F E+ +VGR ++ Sbjct: 185 LPTGCLLVGPPGTGKTLLAKAVAGEAGVPFFAVAASEFVEL-FVGRGAARV 234 >gi|225568885|ref|ZP_03777910.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM 15053] gi|225162384|gb|EEG75003.1| hypothetical protein CLOHYLEM_04964 [Clostridium hylemonae DSM 15053] Length = 663 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + Q+ A L PK LLVGP G GKT +++ +A Sbjct: 178 VAGQDEAKESLQEVVDFLHNPGKYTQIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 232 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 233 AKVPFFSLTGSSFVEM-YVGVGASR-VRDLFKQA 264 >gi|331092500|ref|ZP_08341322.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400721|gb|EGG80324.1| hypothetical protein HMPREF9477_01965 [Lachnospiraceae bacterium 2_1_46FAA] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 251 >gi|326431627|gb|EGD77197.1| ATP-dependent Zn protease [Salpingoeca sp. ATCC 50818] Length = 750 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF ++F E+ YVG + +RDL A Sbjct: 327 LPKGVLLMGPPGTGKTLLARAVAGEAGVPFFYSSGSEFDEM-YVGVGARR-VRDLFAAA 383 >gi|325663695|ref|ZP_08152099.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087217|ref|ZP_08336287.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470188|gb|EGC73421.1| hypothetical protein HMPREF0490_02840 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408903|gb|EGG88364.1| hypothetical protein HMPREF0987_02590 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 609 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 253 >gi|323705587|ref|ZP_08117161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium xylanolyticum LX-11] gi|323535064|gb|EGB24841.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium xylanolyticum LX-11] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|323142056|ref|ZP_08076904.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] gi|322413443|gb|EFY04314.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] Length = 651 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 185 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 241 >gi|291087305|ref|ZP_06346033.2| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1] gi|291075290|gb|EFE12654.1| ATP-dependent metalloprotease FtsH [Clostridium sp. M62/1] Length = 597 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 175 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 231 >gi|283798857|ref|ZP_06348010.1| cell division protein FtsH [Clostridium sp. M62/1] gi|291073395|gb|EFE10759.1| cell division protein FtsH [Clostridium sp. M62/1] Length = 620 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + + GQ++AK A + L N + ++ A L PK Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258 >gi|85057694|ref|YP_456610.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] gi|84789799|gb|ABC65531.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] Length = 417 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ LA A PF V ++F EI YVG + IRDL A Sbjct: 207 IPKGVLLEGPPGTGKTLLAKALANEAKVPFYAVSGSEFVEI-YVGVGASR-IRDLFQKA 263 >gi|56750609|ref|YP_171310.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81299751|ref|YP_399959.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|56685568|dbj|BAD78790.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|81168632|gb|ABB56972.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 630 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 258 >gi|325184426|emb|CCA18918.1| predicted protein putative [Albugo laibachii Nc14] Length = 675 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A A PF ++F E+ YVG + +RDL + A Sbjct: 261 LPKGVLLTGPPGTGKTLLARAIAGEASVPFFYASGSEFEEM-YVGVGARR-VRDLFEAA 317 >gi|310830691|ref|YP_003965792.1| Probable metalloprotease transmembrane protein [Paenibacillus polymyxa SC2] gi|309250158|gb|ADO59724.1| Probable metalloprotease transmembrane protein [Paenibacillus polymyxa SC2] Length = 606 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++ GP G GKT ++ LA AG PF V + F E YVG + +RD+ ++A Sbjct: 204 LPKGVIFYGPPGTGKTLFAKALAGEAGVPFFSVSGSDFVE-KYVGTGASR-VRDMFNLA 260 >gi|299469796|emb|CBN76650.1| FtsH protease [Ectocarpus siliculosus] Length = 738 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ++L GP G GKT I+R +A AG PFI ++F E+ +VG + +RDL D A Sbjct: 298 IPRGVILEGPPGTGKTLIARAVAGEAGVPFIATSGSEFVEM-FVGVGAAR-VRDLFDKA 354 >gi|317507802|ref|ZP_07965504.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC BAA-974] gi|316253921|gb|EFV13289.1| ATP-dependent metallopeptidase HflB [Segniliparus rugosus ATCC BAA-974] Length = 694 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 189 LQNPARYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 243 FVGVGASR-VRDLFEQA 258 >gi|291520851|emb|CBK79144.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7] Length = 677 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+++K R + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 182 VAGQEESKESLREIVDFLHNPEKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 237 AGVPFFSLSGSDFVEM-FVGVGASR-VRDL 264 >gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] Length = 695 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L + +++ A ++PK +LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|24211982|sp|Q8T5T1|MDN1_GIALA RecName: Full=Midasin; AltName: Full=MIDAS-containing protein gi|20147777|gb|AAM12656.1|AF494287_1 midasin [Giardia intestinalis] Length = 4835 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 13/119 (10%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109 +LLVGPTG+GKT + +AR G V ++ T+ GYV +++I+R+L D Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDAADLLGGYVPATLDRILRNLYDAI 411 Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDK 163 ++ + R+++ V E AE+ I L +TA S R+V RK++ GE+ ++ Sbjct: 412 TGSLGLYISVRKNQIFVTELHKSYAEKDIAKFLANCETALSGMRQVLRKEV--GEVVEQ 468 >gi|315498281|ref|YP_004087085.1| ATP-dependent clp protease, ATP-binding subunit clpa [Asticcacaulis excentricus CB 48] gi|315416293|gb|ADU12934.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Asticcacaulis excentricus CB 48] Length = 769 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ ++L R + GQ +A ++ A++ A LRD P + L GPTGVGKT Sbjct: 460 RDLTNDLQRVVFGQDEAIEQLSAAMKLAR------AGLRDANKPIGSYLFSGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++L++ G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLSQTLGIELLRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 564 >gi|300855649|ref|YP_003780633.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium ljungdahlii DSM 13528] gi|300435764|gb|ADK15531.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Clostridium ljungdahlii DSM 13528] Length = 746 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%) Query: 16 LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 L I GQ +A +AV A+ R+R + D N+L VGPTGVGKT IS++L+ Sbjct: 454 LKEKIFGQDEAVKAVVRAIKRSRAGFNE------DNKTVANLLFVGPTGVGKTEISKQLS 507 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 P I+ +++++ E V R Sbjct: 508 NALNIPLIRFDMSEYQEKHTVAR 530 >gi|295090291|emb|CBK76398.1| ATP-dependent metalloprotease FtsH [Clostridium cf. saccharolyticum K10] Length = 620 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 3 LTFNFSPREIVSELDRY-----IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPK 54 +TF S +I +E + + GQ++AK A + L N + ++ A L PK Sbjct: 150 MTFGKSNAKIYAESETGKTFADVAGQEEAKDALKEIVDFLHNPGKYAEIGATL-----PK 204 Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 GALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258 >gi|296082901|emb|CBI22202.3| unnamed protein product [Vitis vinifera] Length = 657 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302 >gi|67926050|ref|ZP_00519307.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] gi|67852105|gb|EAM47607.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] Length = 503 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|159108534|ref|XP_001704537.1| Midasin [Giardia lamblia ATCC 50803] gi|157432603|gb|EDO76863.1| Midasin [Giardia lamblia ATCC 50803] Length = 4835 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 13/119 (10%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109 +LLVGPTG+GKT + +AR G V ++ T+ GYV +++I+R+L D Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDAADLLGGYVPATLDRILRNLYDAI 411 Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRDGEISDK 163 ++ + R+++ V E AE+ I L +TA S R+V RK++ GE+ ++ Sbjct: 412 TGSLGLYISVRKNQIFVTELHKSYAEKDIAKFLANCETALSGMRQVLRKEV--GEVVEQ 468 >gi|8051696|dbj|BAA96090.1| FtsH [Thermus thermophilus] Length = 624 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP GVGKT ++R +A A PFI + F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244 >gi|291528586|emb|CBK94172.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1] Length = 702 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N R + A L PK LLVGP G GKT +++ +A Sbjct: 205 VAGQDEAKESLQEVVDFLHNPKRYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ ++G + +RDL Sbjct: 260 AGVPFFSLAGSDFVEM-FIGVGASR-VRDL 287 >gi|306526251|sp|P54813|YME1_CAEEL RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog gi|224490507|emb|CAA88955.2| C. elegans protein M03C11.5, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 723 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ VG+ + +RDL D A Sbjct: 280 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 336 >gi|222099058|ref|YP_002533626.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359] gi|221571448|gb|ACM22260.1| Cell division protein FtsH [Thermotoga neapolitana DSM 4359] Length = 610 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245 >gi|110668990|ref|YP_658801.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790] gi|109626737|emb|CAJ53204.1| AAA-type ATPase [Haloquadratum walsbyi DSM 16790] Length = 491 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 IL VGP G GKT +SR LA G PF++V+++ T +G +NVE+ Sbjct: 246 ILFVGPPGTGKTTVSRALAHELGLPFVEVKLSMITSQYLGETAKNVEK 293 >gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] Length = 628 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A V L + R ++ A ++PK +LLVGP G GKT +++ +A Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251 >gi|295688127|ref|YP_003591820.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756] gi|295430030|gb|ADG09202.1| ATP-dependent metalloprotease FtsH [Caulobacter segnis ATCC 21756] Length = 626 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I+R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|110591249|pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591250|pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591251|pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591252|pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591253|pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591254|pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP GVGKT ++R +A A PFI + F E+ +VG + +RDL + A Sbjct: 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 119 >gi|17554264|ref|NP_499298.1| YME1-Like (Yeast Mitochondrial Escape) AAA protease family member (ymel-1) [Caenorhabditis elegans] Length = 676 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ VG+ + +RDL D A Sbjct: 233 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 289 >gi|313888858|ref|ZP_07822518.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845031|gb|EFR32432.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] Length = 634 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A++ L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 171 VAGQDEAKEALSELVDFLHNPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 225 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 A PF + + F E+ +VG + +RDL A+ Sbjct: 226 AEVPFFSISGSAFVEM-FVGLGAAK-VRDLFKQAV 258 >gi|313114238|ref|ZP_07799786.1| putative ATP-dependent metalloprotease [Faecalibacterium cf. prausnitzii KLE1255] gi|310623432|gb|EFQ06839.1| putative ATP-dependent metalloprotease [Faecalibacterium cf. prausnitzii KLE1255] Length = 612 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL Sbjct: 199 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEM-FVGMGASK-VRDL 251 >gi|302876586|ref|YP_003845219.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|307687261|ref|ZP_07629707.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|302579443|gb|ADL53455.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] Length = 647 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 188 IPKGMLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFESA 244 >gi|297563885|ref|YP_003682858.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848334|gb|ADH70352.1| ATP-dependent metalloprotease FtsH [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 685 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|113953333|ref|YP_729587.1| cell division protein FtsH [Synechococcus sp. CC9311] gi|113880684|gb|ABI45642.1| cell division protein FtsH [Synechococcus sp. CC9311] Length = 617 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 194 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 250 >gi|315655900|ref|ZP_07908798.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333] gi|315489964|gb|EFU79591.1| cell division protein FtsH [Mobiluncus curtisii ATCC 51333] Length = 759 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275 >gi|300865379|ref|ZP_07110188.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506] gi|300336614|emb|CBN55338.1| FtsH-2 peptidase [Oscillatoria sp. PCC 6506] Length = 623 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEL-FVGVGSAR-VRDLFEQA 256 >gi|195614112|gb|ACG28886.1| FtsH6 - Zea mays FtsH protease Length = 691 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 316 >gi|220908960|ref|YP_002484271.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] gi|219865571|gb|ACL45910.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7425] Length = 631 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 198 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 254 >gi|219667350|ref|YP_002457785.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] gi|219537610|gb|ACL19349.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] Length = 608 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L + R + ADL PK LLVGP G GKT +++ +A Sbjct: 170 VAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PKGALLVGPPGTGKTLLAKAVAGE 224 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 225 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 256 >gi|332654867|ref|ZP_08420609.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] gi|332516210|gb|EGJ45818.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] Length = 605 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + ++F E+ +VGR + +RDL A Sbjct: 199 LPKGALLVGPPGTGKTLLAKAVAGEANVPFFSIAGSEFVEM-FVGRGAAK-VRDLFKQA 255 >gi|212274447|ref|NP_001130462.1| hypothetical protein LOC100191560 [Zea mays] gi|194689194|gb|ACF78681.1| unknown [Zea mays] Length = 691 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 260 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 316 >gi|253700538|ref|YP_003021727.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] gi|251775388|gb|ACT17969.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] Length = 598 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MP +LLVGP G GKT ++R +A A PF + ++F E+ YVG + +RDL Sbjct: 179 MPTGVLLVGPPGTGKTLLARAVAGEADVPFFSISGSEFVEM-YVGVGASR-VRDL 231 >gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328] gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328] gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] Length = 628 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A V L + R ++ A ++PK +LLVGP G GKT +++ +A Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251 >gi|89896820|ref|YP_520307.1| hypothetical protein DSY4074 [Desulfitobacterium hafniense Y51] gi|89336268|dbj|BAE85863.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L + R + ADL PK LLVGP G GKT +++ +A Sbjct: 173 VAGQDEAKEALTEIVDFLHDPSRYAAIGADL-----PKGALLVGPPGTGKTLLAKAVAGE 227 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 228 AKVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 259 >gi|311070716|ref|YP_003975639.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942] gi|310871233|gb|ADP34708.1| hypothetical protein BATR1942_18955 [Bacillus atrophaeus 1942] Length = 639 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|260893890|ref|YP_003239987.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4] gi|260866031|gb|ACX53137.1| ATP-dependent metalloprotease FtsH [Ammonifex degensii KC4] Length = 639 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT I+R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLYGPPGTGKTLIARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 247 >gi|229819199|ref|YP_002880725.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM 12333] gi|229565112|gb|ACQ78963.1| ATP-dependent metalloprotease FtsH [Beutenbergia cavernae DSM 12333] Length = 684 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT I+R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLIARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|239617940|ref|YP_002941262.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1] gi|310943134|sp|C5CES8|FTSH_KOSOT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|239506771|gb|ACR80258.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1] Length = 645 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL A Sbjct: 196 MPKGILLVGPPGTGKTLLARAVAGEANVPFFYISGSDFVEL-FVGVGAAR-VRDLFSQA 252 >gi|254441332|ref|ZP_05054825.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 307] gi|198251410|gb|EDY75725.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 307] Length = 773 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ S L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|170288157|ref|YP_001738395.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2] gi|170175660|gb|ACB08712.1| ATP-dependent metalloprotease FtsH [Thermotoga sp. RQ2] Length = 610 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245 >gi|154684588|ref|YP_001419749.1| hypothetical protein RBAM_000800 [Bacillus amyloliquefaciens FZB42] gi|154350439|gb|ABS72518.1| FtsH [Bacillus amyloliquefaciens FZB42] Length = 639 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|150392225|ref|YP_001322274.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] gi|310943093|sp|A6TWP7|FTSH2_ALKMQ RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|149952087|gb|ABR50615.1| ATP-dependent metalloprotease FtsH [Alkaliphilus metalliredigens QYMF] Length = 689 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL++GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGILMIGPPGTGKTYLTKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 253 >gi|332706533|ref|ZP_08426594.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332354417|gb|EGJ33896.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 660 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 239 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 291 >gi|304440187|ref|ZP_07400077.1| ATP-dependent metalloprotease FtsH [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371236|gb|EFM24852.1| ATP-dependent metalloprotease FtsH [Peptoniphilus duerdenii ATCC BAA-1640] Length = 633 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +SR +A A PF + + F E+ +VG + +RDL D A Sbjct: 195 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFLMSGSDFVEM-FVGVGASR-VRDLFDTA 251 >gi|225452799|ref|XP_002283393.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 676 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302 >gi|308171960|ref|YP_003918665.1| cell-division protein and general stress protein [Bacillus amyloliquefaciens DSM 7] gi|307604824|emb|CBI41195.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus amyloliquefaciens DSM 7] gi|328910030|gb|AEB61626.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus amyloliquefaciens LL3] Length = 639 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|153854743|ref|ZP_01995977.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814] gi|149752650|gb|EDM62581.1| hypothetical protein DORLON_01975 [Dorea longicatena DSM 13814] Length = 510 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 95 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEEA 151 >gi|169627637|ref|YP_001701286.1| cell division protein FtsH-like protein [Mycobacterium abscessus ATCC 19977] gi|169239604|emb|CAM60632.1| Cell division protein FtsH homolog [Mycobacterium abscessus] Length = 750 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 183 LQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 236 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 237 FVGVGASR-VRDLFEQA 252 >gi|147852346|emb|CAN80115.1| hypothetical protein VITISV_032527 [Vitis vinifera] Length = 676 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGIGASR-VRDLFNKA 302 >gi|220919476|ref|YP_002494780.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] gi|219957330|gb|ACL67714.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] Length = 618 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249 >gi|126725796|ref|ZP_01741638.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacterales bacterium HTCC2150] gi|126705000|gb|EBA04091.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacterales bacterium HTCC2150] Length = 775 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 462 RDLEGSLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 516 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 572 >gi|119510340|ref|ZP_01629475.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119464977|gb|EAW45879.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 622 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 200 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 256 >gi|328551770|gb|AEB22262.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus amyloliquefaciens TA208] Length = 639 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 662 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 191 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 247 >gi|328947523|ref|YP_004364860.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM 2489] gi|328447847|gb|AEB13563.1| ATP-dependent metalloprotease FtsH [Treponema succinifaciens DSM 2489] Length = 689 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT ++R +A AG PF ++ + F E+ +VG + +RDL Sbjct: 243 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEM-FVGVGASR-VRDL 295 >gi|302836203|ref|XP_002949662.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f. nagariensis] gi|300265021|gb|EFJ49214.1| hypothetical protein VOLCADRAFT_74350 [Volvox carteri f. nagariensis] Length = 692 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF V ++F E+ +VG + +RDL A Sbjct: 253 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDLFKKA 309 >gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] Length = 628 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A V L + R ++ A ++PK +LLVGP G GKT +++ +A Sbjct: 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGA-----VLPKGVLLVGPPGTGKTLLAQAVAGE 219 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 220 AKVPFFSMSGSEFVEM-FVGLGASK-VRDLFKQA 251 >gi|197124755|ref|YP_002136706.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] gi|196174604|gb|ACG75577.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] Length = 618 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249 >gi|157273412|gb|ABV27311.1| cell division protein FtsH [Candidatus Chloracidobacterium thermophilum] Length = 618 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFIEM-FVGVGAAR-VRDLFEQA 245 >gi|153954953|ref|YP_001395718.1| hypothetical protein CKL_2335 [Clostridium kluyveri DSM 555] gi|219855398|ref|YP_002472520.1| hypothetical protein CKR_2055 [Clostridium kluyveri NBRC 12016] gi|146347811|gb|EDK34347.1| ClpA [Clostridium kluyveri DSM 555] gi|219569122|dbj|BAH07106.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 746 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 32/45 (71%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 ++L VGPTGVGKT IS++LA+ PFI+ +++++ E V R V Sbjct: 488 SLLFVGPTGVGKTEISKQLAKALNIPFIRFDMSEYQEKHTVARLV 532 >gi|148269483|ref|YP_001243943.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1] gi|281411799|ref|YP_003345878.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10] gi|147735027|gb|ABQ46367.1| ATP-dependent metalloprotease FtsH [Thermotoga petrophila RKU-1] gi|281372902|gb|ADA66464.1| ATP-dependent metalloprotease FtsH [Thermotoga naphthophila RKU-10] Length = 610 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245 >gi|116075678|ref|ZP_01472937.1| cell division protein FtsH2 [Synechococcus sp. RS9916] gi|116066993|gb|EAU72748.1| cell division protein FtsH2 [Synechococcus sp. RS9916] Length = 615 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGCLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|167648378|ref|YP_001686041.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31] gi|167350808|gb|ABZ73543.1| ATP-dependent metalloprotease FtsH [Caulobacter sp. K31] Length = 626 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I+R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|304393349|ref|ZP_07375277.1| cell division protease FtsH [Ahrensia sp. R2A130] gi|303294356|gb|EFL88728.1| cell division protease FtsH [Ahrensia sp. R2A130] Length = 646 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 189 MPHGVLLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|197118688|ref|YP_002139115.1| cell division ATP-dependent zinc protease FtsH [Geobacter bemidjiensis Bem] gi|197088048|gb|ACH39319.1| cell division ATP-dependent zinc protease lipoprotein FtsH [Geobacter bemidjiensis Bem] Length = 599 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MP +LLVGP G GKT ++R +A A PF + ++F E+ YVG + +RDL Sbjct: 179 MPTGVLLVGPPGTGKTLLARAVAGEADVPFFSISGSEFVEM-YVGVGASR-VRDL 231 >gi|16127456|ref|NP_422020.1| cell division protein FtsH [Caulobacter crescentus CB15] gi|221236269|ref|YP_002518706.1| cell division protein FtsH [Caulobacter crescentus NA1000] gi|310943123|sp|B8H444|FTSH_CAUCN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|13424908|gb|AAK25188.1| cell division protein FtsH [Caulobacter crescentus CB15] gi|220965442|gb|ACL96798.1| cell division protein ftsH [Caulobacter crescentus NA1000] Length = 626 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I+R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGALLVGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|66827443|ref|XP_647076.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4] gi|60475264|gb|EAL73199.1| hypothetical protein DDB_G0267492 [Dictyostelium discoideum AX4] Length = 720 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 48 RDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 R+ +MPK ILLVGP G GKT +++ LA A FI + ++F E +VG ++ +R+L Sbjct: 192 RNIVMPKGILLVGPPGTGKTLLAKSLAGEARVSFITINGSEFEE-AFVGVGAKR-VRELF 249 Query: 108 DVA 110 + A Sbjct: 250 EAA 252 >gi|194017983|ref|ZP_03056590.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC 7061] gi|194010320|gb|EDW19895.1| putative Cell division protease FtsH homolog [Bacillus pumilus ATCC 7061] Length = 586 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 145 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 201 >gi|153007227|ref|YP_001381552.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152030800|gb|ABS28568.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 623 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 197 MPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 253 >gi|119513548|ref|ZP_01632566.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] gi|119461797|gb|EAW42816.1| Peptidase M41, FtsH [Nodularia spumigena CCY9414] Length = 628 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|325970630|ref|YP_004246821.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] gi|324025868|gb|ADY12627.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] Length = 651 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF K+ F E+ +VG + +RDL Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFKMSGADFVEM-FVGVGAAR-VRDL 292 >gi|150402945|ref|YP_001330239.1| ATPase central domain-containing protein [Methanococcus maripaludis C7] gi|150033975|gb|ABR66088.1| AAA ATPase central domain protein [Methanococcus maripaludis C7] Length = 371 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IGQ DAK+ I ++ ++ E PKNIL GP G GKT ++R LA Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGPPGTGKTMLARALATETEV 182 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P ++ T+ IG +VG +QI Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204 >gi|86160657|ref|YP_467442.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777168|gb|ABC84005.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 621 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 193 MPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 249 >gi|15643346|ref|NP_228390.1| cell division protein FtsH [Thermotoga maritima MSB8] gi|81553136|sp|Q9WZ49|FTSH_THEMA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|4981098|gb|AAD35665.1|AE001733_2 cell division protein FtsH [Thermotoga maritima MSB8] Length = 610 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL Sbjct: 193 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 245 >gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] Length = 456 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + +++ A L PK LLVGP G GKT +++ +A Sbjct: 208 VAGQDEAKESLQEVVDFLHNPKKYREIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 262 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 263 AGVPFFSLAGSDFVEM-FVGVGASR-VRDL 290 >gi|159027910|emb|CAO89717.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 600 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 178 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 230 >gi|300863957|ref|ZP_07108871.1| FtsH peptidase [Oscillatoria sp. PCC 6506] gi|300338031|emb|CBN54017.1| FtsH peptidase [Oscillatoria sp. PCC 6506] Length = 640 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 213 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 269 >gi|284043135|ref|YP_003393475.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684] gi|310943084|sp|D3F124|FTSH1_CONWI RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|283947356|gb|ADB50100.1| ATP-dependent metalloprotease FtsH [Conexibacter woesei DSM 14684] Length = 653 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] Length = 677 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L + +++ A ++PK +LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|157690851|ref|YP_001485313.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032] gi|157679609|gb|ABV60753.1| M41 family endopeptidase FtsH [Bacillus pumilus SAFR-032] Length = 634 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLARASAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|17229814|ref|NP_486362.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120] gi|54035877|sp|Q8YUL9|CLPB1_ANASP RecName: Full=Chaperone protein ClpB 1 gi|17131414|dbj|BAB74021.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120] Length = 880 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L + +IGQQ+A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR-RAR-----AGMKDPNRPIGSFLFMGPTGVGKTEL 623 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA+ A ++++++++ E V R V Sbjct: 624 ARALAQFLFDADDALVRLDMSEYMEKHSVSRLV 656 >gi|300088219|ref|YP_003758741.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527952|gb|ADJ26420.1| ATP-dependent metalloprotease FtsH [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 649 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++R R Q L A + PK +LL+G G GKT ++R +A AG PF + ++F E+ Sbjct: 177 LKSRERFQALGARI-----PKGVLLIGYPGTGKTLLARAIAGEAGVPFFSISGSEFVEM- 230 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 231 FVGVGASR-VRDLFEQA 246 >gi|225573964|ref|ZP_03782609.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM 10507] gi|225038781|gb|EEG49027.1| hypothetical protein RUMHYD_02058 [Blautia hydrogenotrophica DSM 10507] Length = 595 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 180 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 234 >gi|218133177|ref|ZP_03461981.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC 43243] gi|217992050|gb|EEC58054.1| hypothetical protein BACPEC_01039 [Bacteroides pectinophilus ATCC 43243] Length = 616 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK A + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 168 VAGQEEAKEALTEIVDFLHNPDKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 222 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 223 ADVPFFSIAGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|210613790|ref|ZP_03289904.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787] gi|210150999|gb|EEA82007.1| hypothetical protein CLONEX_02115 [Clostridium nexile DSM 1787] Length = 605 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 245 >gi|291530324|emb|CBK95909.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum 70/3] Length = 649 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++N + Q+L A + P+ +LL+GP G GKT +++ +A A PF + + F E+ Sbjct: 189 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 243 FVGVGASR-VRDLFDQA 258 >gi|160935941|ref|ZP_02083315.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC BAA-613] gi|158441183|gb|EDP18900.1| hypothetical protein CLOBOL_00836 [Clostridium bolteae ATCC BAA-613] Length = 604 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 248 >gi|284048929|ref|YP_003399268.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] gi|283953150|gb|ADB47953.1| ATP-dependent metalloprotease FtsH [Acidaminococcus fermentans DSM 20731] Length = 645 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 186 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 242 >gi|258405490|ref|YP_003198232.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfohalobium retbaense DSM 5692] gi|257797717|gb|ACV68654.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfohalobium retbaense DSM 5692] Length = 747 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 7/85 (8%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 SEL + GQ A + +++ R R A LR+ P N LLVGPTGVGKT ++++ Sbjct: 443 SELKGVVFGQDKAVSVIGQSIK-RSR-----AGLREAGKPVGNFLLVGPTGVGKTELAKQ 496 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGR 97 L+ + G F++ +++++ E V R Sbjct: 497 LSNVLGIHFMRFDMSEYMEKHAVAR 521 >gi|157163907|ref|YP_001467283.1| putative cell division protease FtsH-like protein [Campylobacter concisus 13826] gi|112801847|gb|EAT99191.1| putative Cell division protease FtsH homolog [Campylobacter concisus 13826] Length = 641 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 208 IPKGILLVGPPGTGKTLLARAVAGEASVPFFSMSASSFIEM-FVGVGASR-VRDLFENA 264 >gi|157875629|ref|XP_001686199.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial ATP-dependent zinc metallopeptidase gi|68129273|emb|CAJ07813.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain Friedlin] Length = 623 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58 K F F VS + + G +AK V L++ R Q L A L PK +LL Sbjct: 157 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPERYQTLGAKL-----PKGVLL 211 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 GP GVGKT +++ +A A PF+ ++F E+ YVG ++ +R+L A N Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264 >gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] Length = 254 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|308272158|emb|CBX28765.1| Cell division protease ftsH [uncultured Desulfobacterium sp.] Length = 609 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|294631641|ref|ZP_06710201.1| cell division protein FtsH [Streptomyces sp. e14] gi|292834974|gb|EFF93323.1| cell division protein FtsH [Streptomyces sp. e14] Length = 644 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 201 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 260 Query: 110 AINIV 114 A +I+ Sbjct: 261 APSII 265 >gi|291557137|emb|CBL34254.1| membrane protease FtsH catalytic subunit [Eubacterium siraeum V10Sc8a] Length = 649 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++N + Q+L A + P+ +LL+GP G GKT +++ +A A PF + + F E+ Sbjct: 189 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 243 FVGVGASR-VRDLFDQA 258 >gi|90109139|pdb|2CE7|A Chain A, Edta Treated gi|90109140|pdb|2CE7|B Chain B, Edta Treated gi|90109141|pdb|2CE7|C Chain C, Edta Treated gi|90109142|pdb|2CE7|D Chain D, Edta Treated gi|90109143|pdb|2CE7|E Chain E, Edta Treated gi|90109144|pdb|2CE7|F Chain F, Edta Treated gi|90109145|pdb|2CEA|A Chain A, Wildtype gi|90109146|pdb|2CEA|B Chain B, Wildtype gi|90109147|pdb|2CEA|C Chain C, Wildtype gi|90109148|pdb|2CEA|D Chain D, Wildtype gi|90109149|pdb|2CEA|E Chain E, Wildtype gi|90109150|pdb|2CEA|F Chain F, Wildtype Length = 476 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL Sbjct: 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 100 >gi|84501656|ref|ZP_00999828.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597] gi|84390277|gb|EAQ02836.1| ATP-dependent metalloprotease FtsH [Oceanicola batsensis HTCC2597] Length = 639 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|291521148|emb|CBK79441.1| ATP-dependent metalloprotease FtsH [Coprococcus catus GD/7] Length = 604 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 198 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|253581057|ref|ZP_04858318.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847720|gb|EES75689.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 600 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 180 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 234 >gi|159478022|ref|XP_001697103.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158274577|gb|EDP00358.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 689 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF V ++F E+ +VG + +RDL Sbjct: 248 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDL 300 >gi|296329571|ref|ZP_06872057.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672768|ref|YP_003864439.1| cell division protein and general stress protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153314|gb|EFG94177.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411011|gb|ADM36129.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. spizizenii str. W23] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|167751542|ref|ZP_02423669.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702] gi|167655350|gb|EDR99479.1| hypothetical protein EUBSIR_02543 [Eubacterium siraeum DSM 15702] Length = 661 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 ++N + Q+L A + P+ +LL+GP G GKT +++ +A A PF + + F E+ Sbjct: 201 MKNPRKYQELGAKI-----PRGVLLLGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM- 254 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 255 FVGVGASR-VRDLFDQA 270 >gi|114765727|ref|ZP_01444825.1| ATP-dependent metalloprotease FtsH [Pelagibaca bermudensis HTCC2601] gi|114541944|gb|EAU44979.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. HTCC2601] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX] gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41 [Thermobifida fusca YX] Length = 682 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 183 LQNPGKFQSLGAKI-----PKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 236 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 237 FVGVGASR-VRDLFEQA 252 >gi|268574816|ref|XP_002642387.1| C. briggsae CBR-YMEL-1 protein [Caenorhabditis briggsae] gi|187025389|emb|CAP35857.1| CBR-YMEL-1 protein [Caenorhabditis briggsae AF16] Length = 670 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ VG+ + +RDL D A Sbjct: 227 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEV-LVGQGARR-VRDLFDKA 283 >gi|332665521|ref|YP_004448309.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM 1100] gi|332334335|gb|AEE51436.1| ATP-dependent metalloprotease FtsH [Haliscomenobacter hydrossis DSM 1100] Length = 665 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 229 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 285 >gi|295094514|emb|CBK83605.1| ATP-dependent metalloprotease FtsH [Coprococcus sp. ART55/1] Length = 680 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 227 IPKGVLLVGPPGTGKTLMAKAIAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 279 >gi|289579225|ref|YP_003477852.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] gi|297545405|ref|YP_003677707.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528938|gb|ADD03290.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus Ab9] gi|296843180|gb|ADH61696.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 611 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFEQA 249 >gi|126737231|ref|ZP_01752966.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6] gi|126721816|gb|EBA18519.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. SK209-2-6] Length = 639 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|303235059|ref|ZP_07321683.1| Cell division protease FtsH [Finegoldia magna BVS033A4] gi|302493914|gb|EFL53696.1| Cell division protease FtsH [Finegoldia magna BVS033A4] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|302380252|ref|ZP_07268724.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] gi|302312035|gb|EFK94044.1| Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|166364178|ref|YP_001656451.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166086551|dbj|BAG01259.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 631 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 209 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 261 >gi|123968339|ref|YP_001009197.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. AS9601] gi|123198449|gb|ABM70090.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. AS9601] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|153005199|ref|YP_001379524.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152028772|gb|ABS26540.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 634 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|52078564|ref|YP_077355.1| cell-division protein and general stress protein [Bacillus licheniformis ATCC 14580] gi|52783926|ref|YP_089755.1| hypothetical protein BLi00085 [Bacillus licheniformis ATCC 14580] gi|319648593|ref|ZP_08002807.1| cell division protease ftsH [Bacillus sp. BT1B_CT2] gi|52001775|gb|AAU21717.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus licheniformis ATCC 14580] gi|52346428|gb|AAU39062.1| FtsH [Bacillus licheniformis ATCC 14580] gi|317389360|gb|EFV70173.1| cell division protease ftsH [Bacillus sp. BT1B_CT2] Length = 639 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|317970009|ref|ZP_07971399.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. CB0205] Length = 645 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 266 >gi|119963542|ref|YP_945966.1| cell division protein (ftsH) [Arthrobacter aurescens TC1] gi|119950401|gb|ABM09312.1| putative cell division protein (ftsH) [Arthrobacter aurescens TC1] Length = 689 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|16077137|ref|NP_387950.1| cell-division protein and general stress protein [Bacillus subtilis subsp. subtilis str. 168] gi|221307879|ref|ZP_03589726.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. 168] gi|221312201|ref|ZP_03594006.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317134|ref|ZP_03598428.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. JH642] gi|221321397|ref|ZP_03602691.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. SMY] gi|321313739|ref|YP_004206026.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis BSn5] gi|585159|sp|P37476|FTSH_BACSU RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName: Full=Cell division protease FtsH gi|467458|dbj|BAA05304.1| cell division protein [Bacillus subtilis] gi|2632336|emb|CAB11845.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis subsp. subtilis str. 168] gi|291482441|dbj|BAI83516.1| cell division protease FtsH [Bacillus subtilis subsp. natto BEST195] gi|320020013|gb|ADV94999.1| cell-division protein and general stress protein (class III heat-shock) [Bacillus subtilis BSn5] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLVGPPGTGKTLLAKACAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 249 >gi|255024033|ref|ZP_05296019.1| negative regulator of genetic competence ClpC/mecB [Listeria monocytogenes FSL J1-208] Length = 319 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 19/159 (11%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 42 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 95 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 + R LAR L G I++++++F E V + L+ V ++ E+ Sbjct: 96 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSK--------LIGSPPGYVGHEEAGQLTEK 147 Query: 126 ASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 N IL + K A + + +F + L DG ++D + Sbjct: 148 VRRNPYSIILLDEIEK-AHPDVQHMFLQILEDGRLTDSQ 185 >gi|254466957|ref|ZP_05080368.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales bacterium Y4I] gi|206687865|gb|EDZ48347.1| ATP-dependent metallopeptidase HflB subfamily [Rhodobacterales bacterium Y4I] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|163738353|ref|ZP_02145768.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis BS107] gi|163742230|ref|ZP_02149618.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10] gi|161384560|gb|EDQ08941.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis 2.10] gi|161388274|gb|EDQ12628.1| ATP-dependent metalloprotease FtsH [Phaeobacter gallaeciensis BS107] Length = 637 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 678 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L + +++ A ++PK +LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKDSLNEVVDFLHGPQKYKEIGA-----VLPKGVLLVGPPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 230 ANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|313234214|emb|CBY10282.1| unnamed protein product [Oikopleura dioica] Length = 634 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ ILL GP G GKT I++ +A AG PF+ ++F E+ YVG ++ IR L + A Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKR-IRKLFEQAR 256 Query: 112 N 112 N Sbjct: 257 N 257 >gi|220911094|ref|YP_002486403.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus A6] gi|219857972|gb|ACL38314.1| ATP-dependent metalloprotease FtsH [Arthrobacter chlorophenolicus A6] Length = 687 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256 >gi|169824691|ref|YP_001692302.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328] gi|167831496|dbj|BAG08412.1| ATP-dependent zinc metallopeptidase [Finegoldia magna ATCC 29328] Length = 631 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19] Length = 336 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 ++G ++AKRA ++ L+N P + RD PK +L GPTG GKT +R +A Sbjct: 92 VVGHEEAKRACSLLVEYLKN-------PEEFRD-WAPKTVLFYGPTGTGKTHTARAVAGE 143 Query: 77 AGAPFIKVEVTKFTEIG-YVGRNVEQIIR 104 A P + + + +G YVG E+I R Sbjct: 144 AKVPLLHMNAAEI--LGKYVGEASERIRR 170 >gi|2492515|sp|Q39444|FTSH_CAPAN RecName: Full=ATP-dependent zinc metalloprotease FTSH, chloroplastic; Flags: Precursor gi|929013|emb|CAA62084.1| ATPase [Capsicum annuum] Length = 662 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK LLVGP G GKT ++R +A AG PF ++F E+ +VG Sbjct: 262 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVG 305 >gi|260753078|ref|YP_003225971.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552441|gb|ACV75387.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 773 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A + +A A++ A LR+ P + L GPTGVGKT ++R+ Sbjct: 459 TDLKRVVFGQDKAIKTLASAIKLSR------AGLREMHKPIGSYLFSGPTGVGKTEVARQ 512 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA L G P + +++++ E GYVG + ++ D ++ Sbjct: 513 LASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIE 559 >gi|239629120|ref|ZP_04672151.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519266|gb|EEQ59132.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 604 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 248 >gi|126725519|ref|ZP_01741361.1| FtsH [Rhodobacterales bacterium HTCC2150] gi|126704723|gb|EBA03814.1| FtsH [Rhodobacterales bacterium HTCC2150] Length = 629 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231 >gi|56551301|ref|YP_162140.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis ZM4] gi|241760955|ref|ZP_04759044.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56542875|gb|AAV89029.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis ZM4] gi|241374574|gb|EER64035.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 773 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A + +A A++ A LR+ P + L GPTGVGKT ++R+ Sbjct: 459 TDLKRVVFGQDKAIKTLASAIKLSR------AGLREMHKPIGSYLFSGPTGVGKTEVARQ 512 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA L G P + +++++ E GYVG + ++ D ++ Sbjct: 513 LASLLGIPLKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAIE 559 >gi|186682152|ref|YP_001865348.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] gi|186464604|gb|ACC80405.1| ATP-dependent metalloprotease FtsH [Nostoc punctiforme PCC 73102] Length = 642 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 220 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 276 >gi|312075254|ref|XP_003140335.1| AAA ATPase [Loa loa] gi|307764496|gb|EFO23730.1| AAA ATPase [Loa loa] Length = 353 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 30 VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89 + + +RN +++ L ++L PK +LL GP G GKT +++ +AR A A FI ++V+ Sbjct: 101 IPLKIRNVYKKFALSSNLFSP--PKGVLLYGPPGCGKTLLAKIIARAANARFINLQVSSL 158 Query: 90 TEIGY 94 + Y Sbjct: 159 CDKWY 163 >gi|260431104|ref|ZP_05785075.1| cell division protease FtsH [Silicibacter lacuscaerulensis ITI-1157] gi|260414932|gb|EEX08191.1| cell division protease FtsH [Silicibacter lacuscaerulensis ITI-1157] Length = 638 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|225420297|ref|ZP_03762600.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme DSM 15981] gi|225041114|gb|EEG51360.1| hypothetical protein CLOSTASPAR_06640 [Clostridium asparagiforme DSM 15981] Length = 595 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 180 IPKGLLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 236 >gi|89892947|ref|YP_516434.1| hypothetical protein DSY0201 [Desulfitobacterium hafniense Y51] gi|89332395|dbj|BAE81990.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 657 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|320537708|ref|ZP_08037634.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema phagedenis F0421] gi|320145445|gb|EFW37135.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Treponema phagedenis F0421] Length = 795 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 11/99 (11%) Query: 4 TFNFSPREIVSELDRYI----IGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58 T + E + EL+++I GQ++A RAVA A++ R R A R + P N+ Sbjct: 481 TVTINETERLKELEQHIAAKVFGQEEAVRAVAQAVK-RSR-----AGFRAKNKPVANLFF 534 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GPTGVGKT ++R LA G + +++++ E V R Sbjct: 535 AGPTGVGKTELARSLAEELGIALHRFDMSEYQEKHTVSR 573 >gi|320095492|ref|ZP_08027162.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str. F0338] gi|319977577|gb|EFW09250.1| cell division protein FtsH [Actinomyces sp. oral taxon 178 str. F0338] Length = 687 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A A APF + ++F E+ YVG + +RDL D A Sbjct: 209 IPRGVLLYGPPGTGKTLLAKAVAGEAHAPFFSISGSEFMEL-YVGVGASR-VRDLFDRA 265 >gi|256784957|ref|ZP_05523388.1| cell division protein FtsH-like protein [Streptomyces lividans TK24] gi|289768848|ref|ZP_06528226.1| cell division protein [Streptomyces lividans TK24] gi|289699047|gb|EFD66476.1| cell division protein [Streptomyces lividans TK24] Length = 648 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 235 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 294 Query: 110 AINIV 114 A +I+ Sbjct: 295 APSII 299 >gi|237844975|ref|XP_002371785.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49] gi|211969449|gb|EEB04645.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49] gi|221501549|gb|EEE27322.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii VEG] Length = 831 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP+G GKT ++R +A AG PF+ F E+ +VG+ + +R L D A Sbjct: 337 VPRGVLLEGPSGTGKTLLARAVAGEAGVPFLSFSGGAFVEL-FVGQGASR-VRALFDAA 393 >gi|254454634|ref|ZP_05068071.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 238] gi|198269040|gb|EDY93310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Octadecabacter antarcticus 238] Length = 773 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ S L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLESALKRVVFGQDDAIVALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHSISRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|172036868|ref|YP_001803369.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171698322|gb|ACB51303.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 636 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 221 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 277 >gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens] Length = 807 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 P+ ILLVGP G GKT +++ +A A PFI ++F E+ YVG + +RDL Sbjct: 373 PRGILLVGPPGTGKTLLAKAVAGEADVPFISCSASEFVEL-YVGMGASR-VRDL 424 >gi|308812909|ref|XP_003083761.1| FtsH protease, putative (ISS) [Ostreococcus tauri] gi|116055643|emb|CAL57728.1| FtsH protease, putative (ISS) [Ostreococcus tauri] Length = 610 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF ++F E+ +VG + +RDL A Sbjct: 211 LPKGLLLVGPPGTGKTMLAKAVAGEAGVPFFYTSGSEFEEM-FVGVGARR-VRDLFKAA 267 >gi|113954954|ref|YP_730623.1| metalloprotease ATP-dependent, FtsH family protein [Synechococcus sp. CC9311] gi|113882305|gb|ABI47263.1| metalloprotease, ATP-dependent, FtsH family protein [Synechococcus sp. CC9311] Length = 643 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 219 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 271 >gi|219666214|ref|YP_002456649.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] gi|219536474|gb|ACL18213.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] Length = 657 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|313220370|emb|CBY31225.1| unnamed protein product [Oikopleura dioica] Length = 634 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ ILL GP G GKT I++ +A AG PF+ ++F E+ YVG ++ IR L + A Sbjct: 199 VPRGILLNGPPGTGKTLIAKAIAGEAGVPFLYASGSQFDEM-YVGVGAKR-IRKLFEQAR 256 Query: 112 N 112 N Sbjct: 257 N 257 >gi|259417972|ref|ZP_05741891.1| cell division protease FtsH [Silicibacter sp. TrichCH4B] gi|259346878|gb|EEW58692.1| cell division protease FtsH [Silicibacter sp. TrichCH4B] Length = 637 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|238922947|ref|YP_002936460.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238874619|gb|ACR74326.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 609 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 245 >gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] Length = 626 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I+R +A A PFI + F E+ +VG + +RDL + A Sbjct: 186 IPKGVLLVGPPGSGKTHIARAVAGEAKVPFIAASGSDFVEM-FVGVGAAR-VRDLFETA 242 >gi|284989213|ref|YP_003407767.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM 43160] gi|284062458|gb|ADB73396.1| ATP-dependent metalloprotease FtsH [Geodermatophilus obscurus DSM 43160] Length = 662 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 254 >gi|182418145|ref|ZP_02949445.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237666212|ref|ZP_04526199.1| cell division protease FtsH family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377963|gb|EDT75503.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237658302|gb|EEP55855.1| cell division protease FtsH family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 703 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLA 77 + GQ++AK + L+ PA + +PK +LLVGP G GKT I++ +A A Sbjct: 173 VAGQEEAKES----LKEVIDFLNCPAKYTEIGAKLPKGVLLVGPPGTGKTLIAKAVAGEA 228 Query: 78 GAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114 PF + + F E +G V ++ +D V A IV Sbjct: 229 KVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAKAPCIV 267 >gi|163745694|ref|ZP_02153054.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Oceanibulbus indolifex HEL-45] gi|161382512|gb|EDQ06921.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Oceanibulbus indolifex HEL-45] Length = 773 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ S L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLESSLKRVVFGQDDAIVALSSAIKLSR------AGLREPDKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|145341034|ref|XP_001415621.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus lucimarinus CCE9901] gi|144575844|gb|ABO93913.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus lucimarinus CCE9901] Length = 632 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 198 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 250 >gi|126696141|ref|YP_001091027.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543184|gb|ABO17426.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9301] Length = 637 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 269 >gi|16330069|ref|NP_440797.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492512|sp|P73437|FTSH4_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4 gi|1652556|dbj|BAA17477.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 628 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 262 >gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] Length = 637 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|67922579|ref|ZP_00516086.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] gi|67855588|gb|EAM50840.1| Peptidase M41, FtsH [Crocosphaera watsonii WH 8501] Length = 636 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 221 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 277 >gi|126656220|ref|ZP_01727604.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126622500|gb|EAZ93206.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 621 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus sp. WH 8109] gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus sp. WH 8109] Length = 599 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 185 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVEL-FVGVGASR-VRDL 237 >gi|157413172|ref|YP_001484038.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9215] gi|254526354|ref|ZP_05138406.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] gi|157387747|gb|ABV50452.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9215] gi|221537778|gb|EEE40231.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 637 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|149919978|ref|ZP_01908453.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1] gi|149819251|gb|EDM78685.1| probable ATP-dependent Clp protease [Plesiocystis pacifica SIR-1] Length = 767 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 L GPTGVGKT ++R+LARL G PF++ +++++ E V R Sbjct: 485 FLFTGPTGVGKTELARQLARLLGMPFLRFDMSEYMEKHSVSR 526 >gi|86139142|ref|ZP_01057712.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193] gi|85823986|gb|EAQ44191.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. MED193] Length = 640 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|254441752|ref|ZP_05055245.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter antarcticus 307] gi|198251830|gb|EDY76145.1| ATP-dependent metallopeptidase HflB subfamily [Octadecabacter antarcticus 307] Length = 628 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231 >gi|168334113|ref|ZP_02692326.1| ATP-dependent Zn protease [Epulopiscium sp. 'N.t. morphotype B'] Length = 670 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++ A + P+ +LLVGP G GKT +++ +A AG PF + + F E+ Sbjct: 185 LKNSAKYTEVGAKI-----PRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|154149469|ref|YP_001406077.1| putative cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] gi|153805478|gb|ABS52485.1| putative Cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] Length = 643 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + PK +LLVGP G GKT +++ +A A PF V + F E+ Sbjct: 196 LKNPGRYINLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVNGSSFIEM- 249 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 250 FVGVGASR-VRDLFETA 265 >gi|318041527|ref|ZP_07973483.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 654 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|307256620|ref|ZP_07538400.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864868|gb|EFM96771.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 631 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233 >gi|297564862|ref|YP_003683834.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus silvanus DSM 9946] gi|296849311|gb|ADH62326.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Meiothermus silvanus DSM 9946] Length = 734 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL I GQ +A + VA A++ A LRD P L GPTGVGKT ++R+ Sbjct: 442 AELSAEIYGQPNAVKEVASAIKLAR------AGLRDPHKPIGAYLFAGPTGVGKTELARQ 495 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGR 97 LA G P ++ +++++ E V R Sbjct: 496 LALKLGVPLLRFDMSEYMEKHTVSR 520 >gi|297588661|ref|ZP_06947304.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516] gi|297574034|gb|EFH92755.1| ATP-dependent metalloprotease FtsH [Finegoldia magna ATCC 53516] Length = 637 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|83816311|ref|YP_445161.1| cell division protein FtsH [Salinibacter ruber DSM 13855] gi|83757705|gb|ABC45818.1| cell division protein FtsH [Salinibacter ruber DSM 13855] Length = 686 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 LPTGVLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEM-FVGVGASR-VRDLFDQA 305 >gi|84501333|ref|ZP_00999538.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola batsensis HTCC2597] gi|84390624|gb|EAQ03112.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola batsensis HTCC2597] Length = 872 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R +IGQQ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ +A Sbjct: 565 LHRRVIGQQTAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618 Query: 75 RLA---GAPFIKVEVTKFTEIGYVGR 97 + +++++++F E V R Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVAR 644 >gi|322514379|ref|ZP_08067427.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC 25976] gi|322119730|gb|EFX91774.1| ATP-dependent metallopeptidase HflB [Actinobacillus ureae ATCC 25976] Length = 643 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|148264775|ref|YP_001231481.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4] gi|146398275|gb|ABQ26908.1| membrane protease FtsH catalytic subunit [Geobacter uraniireducens Rf4] Length = 617 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244 >gi|154174002|ref|YP_001407724.1| cell division protein FtsH [Campylobacter curvus 525.92] gi|112803610|gb|EAU00954.1| cell division protein FtsH [Campylobacter curvus 525.92] Length = 648 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 208 IPKGILLVGPPGTGKTLLARAVAGEADVPFFSMSASSFIEM-FVGVGASR-VRDLFENA 264 >gi|108801733|ref|YP_641930.1| Mername-AA223 peptidase [Mycobacterium sp. MCS] gi|119870884|ref|YP_940836.1| Mername-AA223 peptidase [Mycobacterium sp. KMS] gi|108772152|gb|ABG10874.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. MCS] gi|119696973|gb|ABL94046.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. KMS] Length = 783 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LQNPSRYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 236 FVGVGASR-VRDLFEQA 251 >gi|87198092|ref|YP_495349.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM 12444] gi|87133773|gb|ABD24515.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM 12444] Length = 792 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ A ++ A++ A LRD P + L GPTGVGKT ++R L Sbjct: 467 DLKRLVFGQDKAIEVLSSAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARSL 520 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 A++ G P + +++++ E GYVG + ++ D +D + V Sbjct: 521 AQIMGIPLQRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQQPHCV 572 >gi|159903386|ref|YP_001550730.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9211] gi|159888562|gb|ABX08776.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9211] Length = 637 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247] gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247] Length = 793 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 185 LQNPTRYQALGAKI-----PRGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 239 FVGVGASR-VRDLFEQA 254 >gi|254475383|ref|ZP_05088769.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11] gi|214029626|gb|EEB70461.1| ATP-dependent metallopeptidase HflB subfamily [Ruegeria sp. R11] Length = 639 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|83950084|ref|ZP_00958817.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM] gi|83837983|gb|EAP77279.1| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM] Length = 639 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN + +L + PK LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 173 LRNPQKFSRLGGQI-----PKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM- 226 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 227 FVGVGASR-VRDMFEQA 242 >gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA2] gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL044PA1] gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA3] gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08] Length = 719 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|307251349|ref|ZP_07533265.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856590|gb|EFM88730.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 631 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233 >gi|307247569|ref|ZP_07529613.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252149|ref|ZP_07534048.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261053|ref|ZP_07542734.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263234|ref|ZP_07544854.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306855934|gb|EFM88093.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860449|gb|EFM92463.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869250|gb|EFN01046.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871451|gb|EFN03175.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 631 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233 >gi|294507044|ref|YP_003571102.1| Cell division protein FtsH [Salinibacter ruber M8] gi|310943088|sp|D5H7Z5|FTSH1_SALRM RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|294343372|emb|CBH24150.1| Cell division protein FtsH [Salinibacter ruber M8] Length = 686 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 LPTGVLLVGPPGTGKTLLAKAVAGEAGVPFASISGSDFMEM-FVGVGASR-VRDLFDQA 305 >gi|284054936|ref|ZP_06385146.1| ATP-dependent metalloprotease FtsH [Arthrospira platensis str. Paraca] Length = 121 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 6 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 62 >gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238] gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238] Length = 639 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|187734574|ref|YP_001876686.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187424626|gb|ACD03905.1| ATPase AAA-2 domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 860 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 21/99 (21%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL +IGQ +A A+A ALR R R AD++D P + L +GPTGVGKT ++R L Sbjct: 534 ELKSKVIGQDEAASAIARALR-RSR-----ADIKDPRRPIGSFLFLGPTGVGKTYLARNL 587 Query: 74 ARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98 A + I+V+++++ E GYVG + Sbjct: 588 AEIMFGTSDALIQVDMSEYMEKHTTSRLIGSPPGYVGHD 626 >gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 637 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|118475540|ref|YP_892032.1| atpase ec atp-dependent Zn protease [Campylobacter fetus subsp. fetus 82-40] gi|118414766|gb|ABK83186.1| atpase ec atp-dependent zn protease [Campylobacter fetus subsp. fetus 82-40] Length = 556 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT I++ +A A PF F +I YVG +++ Sbjct: 188 MPKGVLMVGPPGVGKTLIAKAVAGEANVPFFYQSGASFVQI-YVGMGAKRV 237 >gi|17541224|ref|NP_501860.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family member (mspn-1) [Caenorhabditis elegans] gi|21903441|sp|P54815|MSP1_CAEEL RecName: Full=Mitochondrial sorting homolog gi|14530490|emb|CAA93516.2| C. elegans protein K04D7.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 342 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 P+ ILL GP G GKT +++ +AR AG FI ++V+ T+ Y Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWY 158 >gi|325961735|ref|YP_004239641.1| membrane protease FtsH catalytic subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323467822|gb|ADX71507.1| membrane protease FtsH catalytic subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 687 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 256 >gi|269218252|ref|ZP_06162106.1| putative cell division protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212380|gb|EEZ78720.1| putative cell division protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 1002 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 274 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFNKA 330 >gi|260576490|ref|ZP_05844480.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sp. SW2] gi|259021373|gb|EEW24679.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sp. SW2] Length = 772 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A+A A++ A LR+ P N L GPTGVGKT Sbjct: 459 RDLEKSLKRVVFGQDKAIEALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 513 VAKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569 >gi|255659247|ref|ZP_05404656.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] gi|260848701|gb|EEX68708.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] Length = 662 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|225574008|ref|ZP_03782653.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM 10507] gi|225038738|gb|EEG48984.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM 10507] Length = 617 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 42 QLPADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 P RD MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG Sbjct: 189 HYPEKYRDIGASMPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGA 247 Query: 100 EQIIRDLVDVA 110 + +RDL A Sbjct: 248 AK-VRDLFKQA 257 >gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 616 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL A Sbjct: 206 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDLFSNA 262 >gi|163814649|ref|ZP_02206038.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759] gi|158450284|gb|EDP27279.1| hypothetical protein COPEUT_00800 [Coprococcus eutactus ATCC 27759] Length = 641 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 215 IPKGVLLVGPPGTGKTLMAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 267 >gi|118490708|ref|XP_001238663.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella] gi|109238446|emb|CAK51410.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella] Length = 296 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 11/106 (10%) Query: 8 SPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 SP +I D + G ++ K R + L+N + Q + A L PK ILL GP G Sbjct: 54 SPEDIKDSFDS-VKGYEEVKKEVREIIEYLKNPEKFQAIGAKL-----PKGILLHGPPGT 107 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT ++R +A AG PF+ + F E+ +VG + IR L A Sbjct: 108 GKTLLARAIAGEAGVPFLHASGSDFEEM-FVGVGASR-IRSLFAAA 151 >gi|303251538|ref|ZP_07337712.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649536|gb|EFL79718.1| cell division protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 643 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|282856880|ref|ZP_06266138.1| cell division protease FtsH [Pyramidobacter piscolens W5455] gi|282585298|gb|EFB90608.1| cell division protease FtsH [Pyramidobacter piscolens W5455] Length = 607 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 44 PADLRD--ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 P RD MPK ILLVGP G GKT +++ +A + PF + ++F E+ +VG + Sbjct: 186 PGRYRDIGAKMPKGILLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK 244 Query: 102 IIRDLVDVA 110 +RDL A Sbjct: 245 -VRDLFKQA 252 >gi|260429534|ref|ZP_05783511.1| cell division protease FtsH [Citreicella sp. SE45] gi|260420157|gb|EEX13410.1| cell division protease FtsH [Citreicella sp. SE45] Length = 638 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|221480843|gb|EEE19267.1| metalloprotease m41 ftsh, putative [Toxoplasma gondii GT1] Length = 829 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP+G GKT ++R +A AG PF+ F E+ +VG+ + +R L D A Sbjct: 335 VPRGVLLEGPSGTGKTLLARAVAGEAGVPFLSFSGGAFVEL-FVGQGASR-VRALFDAA 391 >gi|210630009|ref|ZP_03296210.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279] gi|210160721|gb|EEA91692.1| hypothetical protein COLSTE_00094 [Collinsella stercoris DSM 13279] Length = 705 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 245 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEM-FVGVGASR-VRDLFKSA 301 >gi|163745829|ref|ZP_02153188.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45] gi|161380574|gb|EDQ04984.1| cell division protein FtsH [Oceanibulbus indolifex HEL-45] Length = 625 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 173 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 229 >gi|78779135|ref|YP_397247.1| FtsH peptidase [Prochlorococcus marinus str. MIT 9312] gi|78712634|gb|ABB49811.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. MIT 9312] Length = 637 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|21223942|ref|NP_629721.1| cell division protein FtsH-like protein [Streptomyces coelicolor A3(2)] gi|3191980|emb|CAA19379.1| cell division protein FtsH homolog [Streptomyces coelicolor A3(2)] Length = 648 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 235 MPRGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 294 Query: 110 AINIV 114 A +I+ Sbjct: 295 APSII 299 >gi|307245456|ref|ZP_07527544.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254410|ref|ZP_07536248.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258869|ref|ZP_07540601.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853797|gb|EFM86014.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862709|gb|EFM94665.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867220|gb|EFM99076.1| Membrane protease FtsH catalytic subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 631 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 177 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 233 >gi|295110697|emb|CBL24650.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162] Length = 701 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 + + GQ++AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 185 KNVAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL + A Sbjct: 240 GEANVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273 >gi|241762203|ref|ZP_04760285.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753787|ref|YP_003226680.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856522|ref|YP_163394.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis ZM4] gi|310946773|sp|C8WEG0|FTSH_ZYMMN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|241373250|gb|EER62869.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553150|gb|ACV76096.1| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775527|gb|AAV90283.2| ATP-dependent metalloprotease FtsH [Zymomonas mobilis subsp. mobilis ZM4] Length = 662 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 211 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 267 >gi|149202856|ref|ZP_01879827.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035] gi|149143402|gb|EDM31438.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. TM1035] Length = 627 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231 >gi|72388112|ref|XP_844480.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma brucei TREU927] gi|62359370|gb|AAX79808.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei] gi|70801013|gb|AAZ10921.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261327653|emb|CBH10630.1| metallo-peptidase, Clan MA(E) Family M41 [Trypanosoma brucei gambiense DAL972] Length = 719 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A L PK +LL GP GVGKT +++ +A A PF+ ++F E+ Sbjct: 288 LKNPSRYQALGAKL-----PKGVLLDGPPGVGKTLLAKAIAGEAMVPFLSCSGSEFEEV- 341 Query: 94 YVG 96 YVG Sbjct: 342 YVG 344 >gi|17541226|ref|NP_501861.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family member (mspn-1) [Caenorhabditis elegans] gi|14530491|emb|CAC42312.1| C. elegans protein K04D7.2b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 339 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 P+ ILL GP G GKT +++ +AR AG FI ++V+ T+ Y Sbjct: 114 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWY 155 >gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium] gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium] Length = 614 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A APF + ++F E+ +VG + +RDL A Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 259 >gi|116668719|ref|YP_829652.1| Mername-AA223 peptidase [Arthrobacter sp. FB24] gi|116608828|gb|ABK01552.1| membrane protease FtsH catalytic subunit [Arthrobacter sp. FB24] Length = 689 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1] Length = 711 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|302390907|ref|YP_003826727.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum DSM 5501] gi|302202984|gb|ADL11662.1| membrane protease FtsH catalytic subunit [Acetohalobium arabaticum DSM 5501] Length = 651 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 188 IPKGVLLVGPPGTGKTLMARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFE 242 >gi|295102061|emb|CBK99606.1| ATPases with chaperone activity, ATP-binding subunit [Faecalibacterium prausnitzii L2-6] Length = 766 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 9/89 (10%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 +EL + IIGQ +A VA A++ R R ADL P + + VGPTGVGKT + ++L Sbjct: 472 AELKKKIIGQDEAVHLVAQAVK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 525 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A P I+++++++ E V R + Sbjct: 526 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 554 >gi|258593181|emb|CBE69514.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease [NC10 bacterium 'Dutch sediment'] Length = 642 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++ + Q L A + P+ +LLVGP G GKT +++ +A AG PF + ++F E+ Sbjct: 181 LKHPQKYQALHAKI-----PRGLLLVGPPGCGKTLLAKAVAGEAGVPFFSLSGSEFVEV- 234 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 235 FVGVGASR-VRDLFEQA 250 >gi|296081650|emb|CBI20655.3| unnamed protein product [Vitis vinifera] Length = 1053 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ +VG + +RDL A Sbjct: 253 LPKGVLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 309 >gi|258513583|ref|YP_003189805.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans DSM 771] gi|257777288|gb|ACV61182.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum acetoxidans DSM 771] Length = 608 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|254509562|ref|ZP_05121629.1| ATP-dependent metallopeptidase HflB subfamily protein [Rhodobacteraceae bacterium KLH11] gi|221533273|gb|EEE36261.1| ATP-dependent metallopeptidase HflB subfamily protein [Rhodobacteraceae bacterium KLH11] Length = 638 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|83588978|ref|YP_428987.1| FtsH-2 peptidase [Moorella thermoacetica ATCC 39073] gi|83571892|gb|ABC18444.1| membrane protease FtsH catalytic subunit [Moorella thermoacetica ATCC 39073] Length = 645 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 639 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|253700219|ref|YP_003021408.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] gi|251775069|gb|ACT17650.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M21] Length = 612 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244 >gi|190149910|ref|YP_001968435.1| cell division protease FtsH-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252226|ref|ZP_07338394.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|189915041|gb|ACE61293.1| cell division protease FtsH-like protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649009|gb|EFL79197.1| cell division protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 643 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|168066693|ref|XP_001785268.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663138|gb|EDQ49920.1| predicted protein [Physcomitrella patens subsp. patens] Length = 693 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+L A + PK LLVGP G GKT +++ A AG PF+ + + F E+ Sbjct: 211 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 264 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 265 FVGVGPSR-VRDL 276 >gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L + + ++ A L PK LLVGP G GKT ++R +A Sbjct: 167 VAGQDEAKEALTEIVDFLHHPKKYSEIGATL-----PKGALLVGPPGTGKTLLARAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 222 ANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 253 >gi|116074799|ref|ZP_01472060.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916] gi|116068021|gb|EAU73774.1| hypothetical protein RS9916_29734 [Synechococcus sp. RS9916] Length = 638 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|308799531|ref|XP_003074546.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri] gi|116000717|emb|CAL50397.1| FtsH-like protein Pftf precursor (ISS) [Ostreococcus tauri] Length = 636 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 204 IPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 260 >gi|222056505|ref|YP_002538867.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221565794|gb|ACM21766.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 614 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244 >gi|89068036|ref|ZP_01155453.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516] gi|89046275|gb|EAR52332.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516] Length = 635 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|87302738|ref|ZP_01085549.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701] gi|87282621|gb|EAQ74579.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 5701] Length = 641 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267 >gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] Length = 619 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MPK ILLVGP G GKT +++ +A + PF + ++F E +G V + +D + Sbjct: 202 MPKGILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEK 261 Query: 110 AINIV 114 A IV Sbjct: 262 APCIV 266 >gi|256397526|ref|YP_003119090.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM 44928] gi|256363752|gb|ACU77249.1| ATP-dependent metalloprotease FtsH [Catenulispora acidiphila DSM 44928] Length = 672 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 208 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 264 >gi|85543015|gb|ABC71388.1| putative FtsH protease [Triticum monococcum] Length = 531 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ +VG + +RDL A Sbjct: 34 LPKGVLLVGPPGTGKTMLARAIAGEASVPFFSCSGSEFEEM-FVGVGARR-VRDLFAAA 90 >gi|99082201|ref|YP_614355.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040] gi|99038481|gb|ABF65093.1| ATP-dependent metalloprotease FtsH [Ruegeria sp. TM1040] Length = 637 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|46143708|ref|ZP_00134553.2| COG0465: ATP-dependent Zn proteases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208077|ref|YP_001053302.1| cell division protease FtsH-like protein [Actinobacillus pleuropneumoniae L20] gi|126096869|gb|ABN73697.1| cell division protease FtsH-like protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 640 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 242 >gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL001PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 371 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIGQ++AK+ I ++ + L E PKN+L GP G GKT ++R LA + Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209 >gi|254432500|ref|ZP_05046203.1| cell division protein FtsH [Cyanobium sp. PCC 7001] gi|197626953|gb|EDY39512.1| cell division protein FtsH [Cyanobium sp. PCC 7001] Length = 644 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|328767147|gb|EGF77198.1| hypothetical protein BATDEDRAFT_91915 [Batrachochytrium dendrobatidis JAM81] Length = 377 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT +++ LA+ +GA FI + V+ TE + G + ++++ L +A Sbjct: 143 PKGVLLYGPPGCGKTMLAKALAKESGACFINLHVSTLTE-KWFGES-QKLVNALFSIA 198 >gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA1] gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA2] gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL063PA1] gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA3] gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA2] gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL072PA2] gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA2] gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA3] gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA3] gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL072PA1] gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3] gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL013PA2] gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165] gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165] gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL020PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137] gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|197119016|ref|YP_002139443.1| cell division ATP-dependent zinc protease FtsH [Geobacter bemidjiensis Bem] gi|197088376|gb|ACH39647.1| cell division ATP-dependent zinc protease FtsH [Geobacter bemidjiensis Bem] Length = 612 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244 >gi|126728390|ref|ZP_01744206.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37] gi|126711355|gb|EBA10405.1| ATP-dependent metalloprotease FtsH [Sagittula stellata E-37] Length = 640 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|3820564|gb|AAC84037.1| ATP-dependent zinc metallopeptidase FtsH [Heliobacillus mobilis] Length = 601 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|56697937|ref|YP_168308.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3] gi|56679674|gb|AAV96340.1| ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3] Length = 639 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|87124413|ref|ZP_01080262.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917] gi|86167985|gb|EAQ69243.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. RS9917] Length = 638 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA4] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA1] gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL053PA2] gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL092PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|167629386|ref|YP_001679885.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum Ice1] gi|167592126|gb|ABZ83874.1| ATP-dependent metalloprotease ftsh [Heliobacterium modesticaldum Ice1] Length = 601 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|165976010|ref|YP_001651603.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876111|gb|ABY69159.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 640 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAGVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 242 >gi|91200867|emb|CAJ73922.1| strongly similar to cell division protein FtsH [Candidatus Kuenenia stuttgartiensis] Length = 637 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R A AG PF + ++F E+ +VG + +RD+ A Sbjct: 228 VPKGVLLIGPPGTGKTLLARATAGEAGVPFYSISASEFIEM-FVGVGAAR-VRDMFKKA 284 >gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740] gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes] Length = 648 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 218 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFETA 274 >gi|119025427|ref|YP_909272.1| hypothetical protein BAD_0409 [Bifidobacterium adolescentis ATCC 15703] gi|118765011|dbj|BAF39190.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 699 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 255 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 311 >gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL060PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL027PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139] gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139] gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA3] gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA4] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|47227684|emb|CAG09681.1| unnamed protein product [Tetraodon nigroviridis] Length = 319 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ AR +G FI ++ + T++ Y Sbjct: 130 PKGVLLFGPPGCGKTMIAKATARASGCKFINLQASTLTDMWY 171 >gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805] gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805] Length = 620 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASR-VRDL 242 >gi|326530356|dbj|BAJ97604.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 495 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK +LLVG G GKT ++R +A AG PF + F E+ YVG + +R+L A N Sbjct: 22 PKGVLLVGQPGTGKTMLARSMAGEAGVPFFSCSGSDFEEM-YVGVGARR-VRELFSAARN 79 >gi|323701589|ref|ZP_08113261.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans DSM 574] gi|323533362|gb|EGB23229.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum nigrificans DSM 574] Length = 608 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL046PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] Length = 611 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK LLVGP G GKT ++R +A + PF + ++F E+ +VGR + +R+L D A Sbjct: 197 PKGALLVGPPGTGKTLLARAVAGESHVPFFSIAGSEFVEM-FVGRGAAK-VRELFDEA 252 >gi|154486836|ref|ZP_02028243.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis L2-32] gi|154084699|gb|EDN83744.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis L2-32] Length = 699 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 255 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 311 >gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes KPA171202] gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187] gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes KPA171202] gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187] gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA2] gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL025PA1] gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL063PA2] gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL007PA1] gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL056PA1] gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL086PA1] gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA1] gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL053PA1] gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL045PA1] gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA1] gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL078PA1] gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL038PA1] gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL030PA1] gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL030PA2] gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2] gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL043PA1] gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL043PA2] gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|78779330|ref|YP_397442.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9312] gi|78712829|gb|ABB50006.1| ATP-dependent metalloprotease FtsH [Prochlorococcus marinus str. MIT 9312] Length = 584 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LL+GP G GKT +++ +A +G PF+ + ++F E+ +VG Sbjct: 166 VPKGVLLIGPPGTGKTLLAKAIAGESGVPFLSISASEFVEL-FVG 209 >gi|22299375|ref|NP_682622.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22295558|dbj|BAC09384.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 644 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 204 IPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 256 >gi|134298005|ref|YP_001111501.1| ATP-dependent metalloprotease FtsH [Desulfotomaculum reducens MI-1] gi|134050705|gb|ABO48676.1| membrane protease FtsH catalytic subunit [Desulfotomaculum reducens MI-1] Length = 615 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 253 >gi|84687701|ref|ZP_01015574.1| ATP-dependent metalloprotease FtsH [Maritimibacter alkaliphilus HTCC2654] gi|84664284|gb|EAQ10775.1| ATP-dependent metalloprotease FtsH [Rhodobacterales bacterium HTCC2654] Length = 630 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 175 IPKGALLVGPPGTGKTLLARSVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231 >gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL046PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL074PA1] gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL083PA1] gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL082PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL013PA1] gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL059PA1] gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA1] gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA3] gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL067PA1] gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL027PA1] gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL059PA2] gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA3] gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL083PA2] gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA1] gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL025PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|322420024|ref|YP_004199247.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] gi|320126411|gb|ADW13971.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] Length = 612 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 192 IPKGVLLMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 244 >gi|156185988|gb|ABU55312.1| ATP-dependent protease ATP-binding subunit [Callosobruchus chinensis] Length = 26 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 19/26 (73%), Positives = 23/26 (88%) Query: 33 ALRNRWRRQQLPADLRDELMPKNILL 58 ALRNRWRR Q+P LRDE++PKNIL+ Sbjct: 1 ALRNRWRRNQVPFPLRDEIIPKNILM 26 >gi|126733589|ref|ZP_01749336.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2] gi|126716455|gb|EBA13319.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. CCS2] Length = 633 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 179 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 235 >gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661] gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog MJ1494 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus jannaschii DSM 2661] Length = 371 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIGQ++AK+ I ++ + L E PKN+L GP G GKT ++R LA + Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209 >gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|242095232|ref|XP_002438106.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor] gi|241916329|gb|EER89473.1| hypothetical protein SORBIDRAFT_10g008130 [Sorghum bicolor] Length = 687 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 257 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFSKA 313 >gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 371 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIGQ++AK+ I ++ + L E PKN+L GP G GKT ++R LA + Sbjct: 126 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 180 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 209 >gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog - Methanococcus jannaschii Length = 373 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIGQ++AK+ I ++ + L E PKN+L GP G GKT ++R LA + Sbjct: 128 IIGQEEAKKKCRIIMKYLENPK-----LFGEWAPKNVLFYGPPGTGKTLMARALATETNS 182 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 183 SFILVKAPEL--IGEHVG-DASKMIRELYQRA 211 >gi|84495018|ref|ZP_00994137.1| putative cell division protein FtsH [Janibacter sp. HTCC2649] gi|84384511|gb|EAQ00391.1| putative cell division protein FtsH [Janibacter sp. HTCC2649] Length = 707 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|320101637|ref|YP_004177228.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC 43644] gi|319748919|gb|ADV60679.1| membrane protease FtsH catalytic subunit [Isosphaera pallida ATCC 43644] Length = 712 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG PF + ++F ++ +VG + +RD+ A Sbjct: 254 IPKGVLLVGPPGSGKTLLARAVAGEAGVPFFSISGSEFIQM-FVGVGASR-VRDMFKTA 310 >gi|317488913|ref|ZP_07947443.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA] gi|316911987|gb|EFV33566.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. 1_3_56FAA] Length = 725 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q + A + P+ LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 211 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 264 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 265 FVGVGASR-VRDLFQQA 280 >gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL082PA2] Length = 717 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|300121999|emb|CBK22573.2| unnamed protein product [Blastocystis hominis] Length = 652 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT ++R +A AG PF V ++F +I +VG + +R+L +VA Sbjct: 137 PHGVLLTGPPGTGKTLMARAVAGEAGVPFFFVSASEFEDI-FVGMGARR-VRELFNVA 192 >gi|116070597|ref|ZP_01467866.1| Peptidase M41, FtsH [Synechococcus sp. BL107] gi|116066002|gb|EAU71759.1| Peptidase M41, FtsH [Synechococcus sp. BL107] Length = 599 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 237 >gi|33861300|ref|NP_892861.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633877|emb|CAE19202.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 637 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAGSEFVEM-FVGVGASR-VRDLFKKA 269 >gi|256826672|ref|YP_003150631.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum DSM 15641] gi|256582815|gb|ACU93949.1| membrane protease FtsH catalytic subunit [Cryptobacterium curtum DSM 15641] Length = 759 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 226 IPRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 278 >gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM 20098] gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM 20098] Length = 692 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 244 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 300 >gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT 98-5491] gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491] gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT 98-5491] Length = 555 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ LA A PF F +I YVG +++ Sbjct: 189 LPKGVLLVGPPGVGKTLIAKALAGEAKVPFYYQSGASFVQI-YVGMGAKRV 238 >gi|212716401|ref|ZP_03324529.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM 16992] gi|225350934|ref|ZP_03741957.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660654|gb|EEB21229.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM 16992] gi|225158390|gb|EEG71632.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 700 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 256 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 312 >gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 620 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVEL-FVGVGASR-VRDL 242 >gi|123966074|ref|YP_001011155.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9515] gi|123200440|gb|ABM72048.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9515] Length = 637 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAGSEFVEM-FVGVGASR-VRDL 265 >gi|85706707|ref|ZP_01037799.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217] gi|85668765|gb|EAQ23634.1| ATP-dependent metalloprotease FtsH [Roseovarius sp. 217] Length = 629 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 175 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 231 >gi|1483215|emb|CAA68141.1| chloroplast FtsH protease [Arabidopsis thaliana] Length = 709 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF +F E+ +VG + +RDL + A Sbjct: 294 IPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSSRPQEFVEL-FVGVGASR-VRDLFEKA 350 >gi|78184725|ref|YP_377160.1| peptidase M41, FtsH [Synechococcus sp. CC9902] gi|78169019|gb|ABB26116.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus sp. CC9902] Length = 599 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 185 IPRGVLLVGPPGTGKTLLAKAIACEAGVPFFSMAASEFVEM-FVGVGASR-VRDL 237 >gi|87303473|ref|ZP_01086256.1| cell division protein [Synechococcus sp. WH 5701] gi|87281886|gb|EAQ73849.1| cell division protein [Synechococcus sp. WH 5701] Length = 603 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 166 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 218 >gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054] Length = 669 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|295106550|emb|CBL04093.1| membrane protease FtsH catalytic subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 781 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q + A + P+ LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 239 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 292 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 293 FVGVGASR-VRDLFQQA 308 >gi|220917560|ref|YP_002492864.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] gi|219955414|gb|ACL65798.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] Length = 635 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|119383442|ref|YP_914498.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans PD1222] gi|119373209|gb|ABL68802.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans PD1222] Length = 631 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|77464236|ref|YP_353740.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides 2.4.1] gi|126463078|ref|YP_001044192.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC 17029] gi|332559125|ref|ZP_08413447.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N] gi|77388654|gb|ABA79839.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides 2.4.1] gi|126104742|gb|ABN77420.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides ATCC 17029] gi|332276837|gb|EGJ22152.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides WS8N] Length = 633 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|313228702|emb|CBY17853.1| unnamed protein product [Oikopleura dioica] Length = 515 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AK A+ A+ +R L +R PK +LL GP G GKT I + +A AGA Sbjct: 248 IAGLKTAKEAINYAVIAPMKRPDLFTGIRS--APKGVLLFGPPGTGKTLIGKCIASQAGA 305 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T ++G E++++ L +A Sbjct: 306 TFFSISASSMTS-KWIGEG-EKLVKVLFTLA 334 >gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021] gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021] Length = 656 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 42 QLPADLR--DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 Q PA + +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG Sbjct: 184 QAPAKFQAIGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGA 242 Query: 100 EQIIRDLVDVA 110 + +RDL + A Sbjct: 243 SR-VRDLFEQA 252 >gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab] gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp. JA-3-3Ab] Length = 628 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 199 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 255 >gi|89053470|ref|YP_508921.1| FtsH peptidase [Jannaschia sp. CCS1] gi|88863019|gb|ABD53896.1| membrane protease FtsH catalytic subunit [Jannaschia sp. CCS1] Length = 641 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|146276618|ref|YP_001166777.1| ATP-dependent metalloprotease FtsH [Rhodobacter sphaeroides ATCC 17025] gi|145554859|gb|ABP69472.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides ATCC 17025] Length = 633 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|310816573|ref|YP_003964537.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25] gi|308755308|gb|ADO43237.1| ATP-dependent metalloprotease FtsH [Ketogulonicigenium vulgare Y25] Length = 635 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|257792624|ref|YP_003183230.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243] gi|257476521|gb|ACV56841.1| ATP-dependent metalloprotease FtsH [Eggerthella lenta DSM 2243] Length = 750 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q + A + P+ LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 236 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 289 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 290 FVGVGASR-VRDLFQQA 305 >gi|149915624|ref|ZP_01904150.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b] gi|149810516|gb|EDM70359.1| ATP-dependent metalloprotease FtsH [Roseobacter sp. AzwK-3b] Length = 641 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|302521006|ref|ZP_07273348.1| cell division protein FtsH [Streptomyces sp. SPB78] gi|333025313|ref|ZP_08453377.1| putative cell division protein FtsH [Streptomyces sp. Tu6071] gi|302429901|gb|EFL01717.1| cell division protein FtsH [Streptomyces sp. SPB78] gi|332745165|gb|EGJ75606.1| putative cell division protein FtsH [Streptomyces sp. Tu6071] Length = 682 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|154505068|ref|ZP_02041806.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149] gi|153794547|gb|EDN76967.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149] Length = 629 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 208 MPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGAAK-VRDLFQQA 264 >gi|86157920|ref|YP_464705.1| FtsH peptidase [Anaeromyxobacter dehalogenans 2CP-C] gi|197122777|ref|YP_002134728.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] gi|85774431|gb|ABC81268.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|196172626|gb|ACG73599.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] Length = 635 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 187 IPKGVLLMGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|87124626|ref|ZP_01080474.1| cell division protein [Synechococcus sp. RS9917] gi|86167505|gb|EAQ68764.1| cell division protein [Synechococcus sp. RS9917] Length = 587 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 163 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 215 >gi|326434668|gb|EGD80238.1| mosaic virus helicase domain binding protein [Salpingoeca sp. ATCC 50818] Length = 650 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G ++AKRA+ + R L LR MPK +LL GP G GKT I + +A + A Sbjct: 377 IAGLEEAKRAIQEMVVWPMMRPDLFKGLR--AMPKGVLLFGPPGTGKTLIGKCIASQSKA 434 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F V + T ++G E+++R L VA Sbjct: 435 TFFSVSASSLTS-KWIGEG-EKLVRALFAVA 463 >gi|167520684|ref|XP_001744681.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777012|gb|EDQ90630.1| predicted protein [Monosiga brevicollis MX1] Length = 447 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A AG PF ++F E+ +VG + +R+L VA Sbjct: 40 LPKGVLLMGPPGTGKTLLARAVAGEAGVPFFYCSGSEFDEM-FVGVGARR-VRELFAVA 96 >gi|148547674|ref|YP_001267776.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1] gi|310946757|sp|A5W382|FTSH_PSEP1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|148511732|gb|ABQ78592.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1] Length = 615 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL D A Sbjct: 190 VPKGTLLVGPPGTGKTLVAKAIAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFDQA 246 >gi|325832734|ref|ZP_08165497.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1] gi|325485873|gb|EGC88334.1| ATP-dependent metallopeptidase HflB [Eggerthella sp. HGA1] Length = 750 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q + A + P+ LLVGP G GKT ++R +A AG PF + + F E+ Sbjct: 236 LANPAKYQSMGAKI-----PRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 289 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 290 FVGVGASR-VRDLFQQA 305 >gi|300742493|ref|ZP_07072514.1| putative cell division protein [Rothia dentocariosa M567] gi|300381678|gb|EFJ78240.1| putative cell division protein [Rothia dentocariosa M567] Length = 722 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AGAPF + + F E+ +VG + +RDL Sbjct: 178 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASR-VRDL 230 >gi|239980352|ref|ZP_04702876.1| cell division protein ftsH-like protein [Streptomyces albus J1074] gi|291452215|ref|ZP_06591605.1| cell division protein FtsH [Streptomyces albus J1074] gi|291355164|gb|EFE82066.1| cell division protein FtsH [Streptomyces albus J1074] Length = 669 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|28572335|ref|NP_789115.1| FtsH-like cell division protein [Tropheryma whipplei TW08/27] gi|28410466|emb|CAD66852.1| FtsH-like putative cell division protein [Tropheryma whipplei TW08/27] Length = 666 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|220930906|ref|YP_002507814.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168] gi|310943131|sp|B8D065|FTSH_HALOH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219992216|gb|ACL68819.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168] Length = 630 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 195 VPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEM-FVGVGASR-VRDLFE 249 >gi|221640120|ref|YP_002526382.1| membrane protease FtsH catalytic subunit [Rhodobacter sphaeroides KD131] gi|221160901|gb|ACM01881.1| Membrane protease FtsH catalytic subunit precursor [Rhodobacter sphaeroides KD131] Length = 623 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 176 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 232 >gi|171741153|ref|ZP_02916960.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC 27678] gi|283455478|ref|YP_003360042.1| cell division protein [Bifidobacterium dentium Bd1] gi|306823451|ref|ZP_07456826.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC 27679] gi|309802710|ref|ZP_07696814.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium JCVIHMP022] gi|171276767|gb|EDT44428.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC 27678] gi|283102112|gb|ADB09218.1| ftsH Cell division protein [Bifidobacterium dentium Bd1] gi|304553158|gb|EFM41070.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC 27679] gi|308220774|gb|EFO77082.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium JCVIHMP022] Length = 688 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 244 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 300 >gi|119222409|gb|ABL62402.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222411|gb|ABL62403.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222413|gb|ABL62404.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222415|gb|ABL62405.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222417|gb|ABL62406.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222419|gb|ABL62407.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 188 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 G GKT +++ LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 1 GSGKTLLAQTLARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 57 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 58 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 117 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 118 DTTNILFICGGAF 130 >gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255] gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255] Length = 639 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPKGALLIGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|28493555|ref|NP_787716.1| cell division protein FtsH [Tropheryma whipplei str. Twist] gi|81437733|sp|Q83FV7|FTSH_TROWT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|28476597|gb|AAO44685.1| cell division protein FtsH [Tropheryma whipplei str. Twist] Length = 666 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|42524085|ref|NP_969465.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus HD100] gi|81616746|sp|Q6MJV1|FTSH2_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|39576293|emb|CAE80458.1| membrane bound zinc metallopeptidase [Bdellovibrio bacteriovorus HD100] Length = 615 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK ILLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 187 MPKGILLVGPPGTGKTLLAKAVAGEAQVPFYSITGSEFVEM-FVGVGAAR-VRDLFEQA 243 >gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum S17] gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010] gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum S17] gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010] Length = 697 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 304 >gi|295837282|ref|ZP_06824215.1| cell division protein [Streptomyces sp. SPB74] gi|295826448|gb|EDY46884.2| cell division protein [Streptomyces sp. SPB74] Length = 685 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|289642581|ref|ZP_06474723.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca glomerata] gi|289507576|gb|EFD28533.1| ATP-dependent metalloprotease FtsH [Frankia symbiont of Datisca glomerata] Length = 720 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|260576640|ref|ZP_05844627.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2] gi|259021125|gb|EEW24434.1| ATP-dependent metalloprotease FtsH [Rhodobacter sp. SW2] Length = 640 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|225429526|ref|XP_002279005.1| PREDICTED: similar to ftsH-like protease [Vitis vinifera] Length = 713 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ +VG + +RDL A Sbjct: 253 LPKGVLLVGPPGTGKTMLARAIAGEAEVPFFSCSGSEFEEM-FVGVGARR-VRDLFSAA 309 >gi|168014683|ref|XP_001759881.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689011|gb|EDQ75385.1| predicted protein [Physcomitrella patens subsp. patens] Length = 670 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+L A + PK LLVGP G GKT +++ A AG PF+ + + F E+ Sbjct: 188 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 241 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 242 FVGVGPSR-VRDL 253 >gi|148265280|ref|YP_001231986.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4] gi|146398780|gb|ABQ27413.1| ATP-dependent metalloprotease FtsH [Geobacter uraniireducens Rf4] Length = 617 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL Sbjct: 207 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDL 259 >gi|163841941|ref|YP_001626346.1| cell division protein [Renibacterium salmoninarum ATCC 33209] gi|162955417|gb|ABY24932.1| cell division protein [Renibacterium salmoninarum ATCC 33209] Length = 704 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254 >gi|148272023|ref|YP_001221584.1| cell division protein, membrane-bound ATP-dependent protease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829953|emb|CAN00878.1| cell division protein, membrane-bound ATP-dependent protease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 666 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|84516648|ref|ZP_01004007.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53] gi|84509684|gb|EAQ06142.1| ATP-dependent metalloprotease FtsH [Loktanella vestfoldensis SKA53] Length = 631 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 179 IPKGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 235 >gi|303272437|ref|XP_003055580.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463554|gb|EEH60832.1| predicted protein [Micromonas pusilla CCMP1545] Length = 570 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 P +LLVG G GKT ++R +A AG PFI V ++F E+ YVG + +RD+ Sbjct: 139 PSGVLLVGAPGTGKTLLARAVAGEAGVPFISVSASEFVEL-YVGMGAAR-VRDV 190 >gi|182437881|ref|YP_001825600.1| putative cell division protein FtsH [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778517|ref|ZP_08237782.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus XylebKG-1] gi|178466397|dbj|BAG20917.1| putative cell division protein FtsH [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658850|gb|EGE43696.1| ATP-dependent metalloprotease FtsH [Streptomyces cf. griseus XylebKG-1] Length = 688 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|168061955|ref|XP_001782950.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665568|gb|EDQ52248.1| predicted protein [Physcomitrella patens subsp. patens] Length = 872 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q+L A + PK LLVGP G GKT +++ A AG PF+ + + F E+ Sbjct: 390 LKNPKKYQELGAKI-----PKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM- 443 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 444 FVGVGPSR-VRDLFAQA 459 >gi|153004905|ref|YP_001379230.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] gi|152028478|gb|ABS26246.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. Fw109-5] Length = 687 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R A AG PF + ++F E+ +VG + +RDL Sbjct: 228 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 280 >gi|239942227|ref|ZP_04694164.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL 15998] gi|291445681|ref|ZP_06585071.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998] gi|291348628|gb|EFE75532.1| cell division protein FtsH [Streptomyces roseosporus NRRL 15998] Length = 673 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM 20213] gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM 20213] Length = 698 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 250 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 306 >gi|197122472|ref|YP_002134423.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] gi|196172321|gb|ACG73294.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter sp. K] Length = 705 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R A AG PF + ++F E+ +VG + +RDL Sbjct: 237 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 289 >gi|121535064|ref|ZP_01666881.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans Nor1] gi|121306314|gb|EAX47239.1| ATP-dependent metalloprotease FtsH [Thermosinus carboxydivorans Nor1] Length = 651 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|82702921|ref|YP_412487.1| ATP-dependent metalloprotease FtsH [Nitrosospira multiformis ATCC 25196] gi|82410986|gb|ABB75095.1| membrane protease FtsH catalytic subunit [Nitrosospira multiformis ATCC 25196] Length = 635 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 200 VPKGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 256 >gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC 824] gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC 824] gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA 2018] Length = 602 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] Length = 753 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253 >gi|325120488|emb|CBZ56042.1| ATP-dependent metalloprotease involved in cell division, related [Neospora caninum Liverpool] Length = 996 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILL GP G GKT ++R +A AG PFI ++F E+ +VG Sbjct: 446 LPKGILLQGPPGTGKTLLARAIAGEAGVPFIHASGSEFEEM-FVG 489 >gi|318061596|ref|ZP_07980317.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actG] gi|318077180|ref|ZP_07984512.1| cell division protein ftsH-like protein [Streptomyces sp. SA3_actF] Length = 684 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|311112388|ref|YP_003983610.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931] gi|310943882|gb|ADP40176.1| cell division protein FtsH [Rothia dentocariosa ATCC 17931] Length = 765 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AGAPF + + F E+ +VG + +RDL A Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGAPFYSISGSDFVEM-FVGVGASR-VRDLFKEA 268 >gi|282866362|ref|ZP_06275407.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE] gi|282558758|gb|EFB64315.1| ATP-dependent metalloprotease FtsH [Streptomyces sp. ACTE] Length = 685 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|302381982|ref|YP_003817805.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides ATCC 15264] gi|302192610|gb|ADL00182.1| ATP-dependent metalloprotease FtsH [Brevundimonas subvibrioides ATCC 15264] Length = 646 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|256826248|ref|YP_003150208.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius DSM 20547] gi|256689641|gb|ACV07443.1| membrane protease FtsH catalytic subunit [Kytococcus sedentarius DSM 20547] Length = 698 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 VPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253 >gi|239988693|ref|ZP_04709357.1| putative cell division protein FtsH [Streptomyces roseosporus NRRL 11379] Length = 684 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|238019160|ref|ZP_04599586.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748] gi|237863859|gb|EEP65149.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748] Length = 815 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ DA AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDDAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|297564905|ref|YP_003683877.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] gi|296849354|gb|ADH62369.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] Length = 626 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT I+R +A A PFI + F E+ +VG + +RDL + A Sbjct: 186 IPKGVLLVGPPGSGKTHIARAVAGEAKVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 242 >gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum NCIMB 41171] gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB 41171] gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB 41171] Length = 697 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 304 >gi|153813325|ref|ZP_01965993.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174] gi|149830615|gb|EDM85706.1| hypothetical protein RUMOBE_03742 [Ruminococcus obeum ATCC 29174] Length = 687 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 187 VAGQEEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL + A Sbjct: 242 ANVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273 >gi|119714708|ref|YP_921673.1| Mername-AA223 peptidase [Nocardioides sp. JS614] gi|119535369|gb|ABL79986.1| membrane protease FtsH catalytic subunit [Nocardioides sp. JS614] Length = 681 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|322494944|emb|CBZ30247.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 623 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58 K F F VS + + G +AK V L++ R Q L A L PK +LL Sbjct: 157 KSRFMFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKHPGRYQTLGAKL-----PKGVLL 211 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 GP GVGKT +++ +A A PF+ ++F E+ YVG ++ +R+L A N Sbjct: 212 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 264 >gi|302544353|ref|ZP_07296695.1| putative cell division protein [Streptomyces hygroscopicus ATCC 53653] gi|302461971|gb|EFL25064.1| putative cell division protein [Streptomyces himastatinicus ATCC 53653] Length = 669 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|289449797|ref|YP_003475214.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184344|gb|ADC90769.1| ATP-dependent metallopeptidase HflB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 673 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + +L A + P+ ILLVGP G GKT +++ +A AG PF + + F E+ Sbjct: 187 LKNPKKYSELGARI-----PRGILLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 240 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 241 FVGVGASR-VRDL 252 >gi|219870744|ref|YP_002475119.1| cell division protein [Haemophilus parasuis SH0165] gi|219690948|gb|ACL32171.1| cell division protein [Haemophilus parasuis SH0165] Length = 642 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 +P +I + L + G +AK VA LR+ + Q+L + PK IL+VGP G Sbjct: 145 APDQIKTRLTD-VAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGT 198 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 GKT +++ +A A PF + + F E+ +VG + +RDL D A Sbjct: 199 GKTLLAKAIAGEANVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 242 >gi|218132155|ref|ZP_03460959.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC 43243] gi|217992949|gb|EEC58947.1| hypothetical protein BACPEC_00012 [Bacteroides pectinophilus ATCC 43243] Length = 216 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 88 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 144 >gi|170780555|ref|YP_001708887.1| cell division protein ftsH-like protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155123|emb|CAQ00223.1| cell division protein ftsH homolog [Clavibacter michiganensis subsp. sepedonicus] Length = 666 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|167772096|ref|ZP_02444149.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM 17241] gi|167665894|gb|EDS10024.1| hypothetical protein ANACOL_03470 [Anaerotruncus colihominis DSM 17241] Length = 653 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 207 IPKGVLLMGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 263 >gi|66954652|dbj|BAD99306.1| FtsH protease [Solanum lycopersicum] Length = 672 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 242 IPKGFLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 298 >gi|331084309|ref|ZP_08333414.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401844|gb|EGG81421.1| hypothetical protein HMPREF0992_02338 [Lachnospiraceae bacterium 6_1_63FAA] Length = 626 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 206 MPKGALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 262 >gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp. 12_1_47BFAA] gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp. 12_1_47BFAA] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|313114589|ref|ZP_07800097.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255] gi|310623053|gb|EFQ06500.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 769 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 9/89 (10%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 EL + IIGQ +A VA A++ R R ADL P + + VGPTGVGKT + ++L Sbjct: 474 GELKKKIIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQL 527 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A P I+++++++ E V R + Sbjct: 528 ANQLFDGPDPLIRLDMSEYMEKYAVSRMI 556 >gi|307327053|ref|ZP_07606243.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu 4113] gi|306887351|gb|EFN18347.1| ATP-dependent metalloprotease FtsH [Streptomyces violaceusniger Tu 4113] Length = 680 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|269796484|ref|YP_003315939.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM 10542] gi|269098669|gb|ACZ23105.1| membrane protease FtsH catalytic subunit [Sanguibacter keddieii DSM 10542] Length = 684 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFNQA 250 >gi|315498688|ref|YP_004087492.1| ATP-dependent metalloprotease ftsh [Asticcacaulis excentricus CB 48] gi|315416700|gb|ADU13341.1| ATP-dependent metalloprotease FtsH [Asticcacaulis excentricus CB 48] Length = 633 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGALLVGPPGTGKTMLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|328954112|ref|YP_004371446.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] gi|328454436|gb|AEB10265.1| ATP-dependent metalloprotease FtsH [Desulfobacca acetoxidans DSM 11109] Length = 625 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT + R +A AG PF+ + + F E+ +VG + +RDL Sbjct: 208 IPKGVLLVGPPGTGKTLLGRAVAGEAGVPFLSLTGSDFVEM-FVGVGAAR-VRDL 260 >gi|324506581|gb|ADY42806.1| Paraplegin [Ascaris suum] Length = 788 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-I 92 L+N R +L A L PK LL GP G GKT +++ LA + APFI + T+F E I Sbjct: 337 LKNPGRYTKLGAKL-----PKGALLTGPPGCGKTLLAKALAAESSAPFISMNGTEFVEMI 391 Query: 93 GYVG 96 G +G Sbjct: 392 GGLG 395 >gi|313681700|ref|YP_004059438.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994] gi|313154560|gb|ADR33238.1| ATPase AAA-2 domain protein [Sulfuricurvum kujiense DSM 16994] Length = 859 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 12/93 (12%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I EL+R ++GQ+ A AVA A+ RN+ A L D+ P + L +GPTGVGKT Sbjct: 566 IEDELNRDVVGQERATHAVARAIKRNK-------AGLSDKSRPIGSFLFLGPTGVGKTQT 618 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 ++ LA+ + I+++++++ E V R V Sbjct: 619 AKTLAKFLFDSSESMIRIDMSEYMEKHAVSRLV 651 >gi|311743363|ref|ZP_07717170.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM 15272] gi|311313431|gb|EFQ83341.1| ATP-dependent metalloprotease FtsH [Aeromicrobium marinum DSM 15272] Length = 687 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 276 >gi|296110154|ref|YP_003620535.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154] gi|295831685|gb|ADG39566.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154] Length = 632 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N PR L +IGQ A VA+ L NR A L D P++ L +GPTGV Sbjct: 289 LNLLPR-----LKSQVIGQDTALEKVAMKLTNR------EAGLADTSKPESFLFMGPTGV 337 Query: 65 GKTAISRRLA-RLAGAP--FIKVEVTKFTEIG 93 GKT +++LA L G FI+ ++++F G Sbjct: 338 GKTETAKQLALNLFGNAQNFIRFDMSEFKFAG 369 >gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] Length = 676 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|323357528|ref|YP_004223924.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037] gi|323273899|dbj|BAJ74044.1| ATP-dependent Zn protease [Microbacterium testaceum StLB037] Length = 670 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFNQA 255 >gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F] gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM 1217] Length = 696 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304 >gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum subsp. longum F8] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC 33331] Length = 682 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|220917260|ref|YP_002492564.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] gi|310943116|sp|B8J992|FTSH_ANAD2 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219955114|gb|ACL65498.1| ATP-dependent metalloprotease FtsH [Anaeromyxobacter dehalogenans 2CP-1] Length = 706 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R A AG PF + ++F E+ +VG + +RDL Sbjct: 238 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 290 >gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 640 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDLFKKA 259 >gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C] gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C] Length = 677 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. longum JDM301] gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. longum JDM301] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|257461436|ref|ZP_05626532.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268] gi|257441159|gb|EEV16306.1| Cell division protease FtsH homolog [Campylobacter gracilis RM3268] Length = 649 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + PK +LLVGP G GKT +++ +A A PF V + F E+ Sbjct: 198 LKNPERYISLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM- 251 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL D A Sbjct: 252 FVGVGASR-VRDLFDNA 267 >gi|260589993|ref|ZP_05855906.1| cell division protein FtsH [Blautia hansenii DSM 20583] gi|260539800|gb|EEX20369.1| cell division protein FtsH [Blautia hansenii DSM 20583] Length = 631 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 211 MPKGALLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 267 >gi|160880188|ref|YP_001559156.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] gi|310943128|sp|A9KIG5|FTSH_CLOPH RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|160428854|gb|ABX42417.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] Length = 577 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK ++L GP G GKT I++ +A AG PF + + F ++ YVG +I Sbjct: 178 MPKGVMLYGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQM-YVGVGASRI 227 >gi|86158199|ref|YP_464984.1| FtsH-2 peptidase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774710|gb|ABC81547.1| membrane protease FtsH catalytic subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 702 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R A AG PF + ++F E+ +VG + +RDL Sbjct: 237 IPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVEM-FVGVGAAR-VRDL 289 >gi|326429214|gb|EGD74784.1| hypothetical protein PTSG_07017 [Salpingoeca sp. ATCC 50818] Length = 552 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Query: 37 RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 R RRQQ + L + + +LL GP G GKTAI+ LA AG PF + + GY+G Sbjct: 261 RHRRQQPNSRLSLQQPQRWLLLHGPHGTGKTAIAHALANSAGLPFAALNMEGVD--GYLG 318 Query: 97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN 146 + ++ L+ A ++ + D V ++ E L+A+ G + ++ Sbjct: 319 HSRAHVLEALLTAASDLACKP-TDNVTPGCAVVVLEH-LEAIAGHNSATD 366 >gi|183602057|ref|ZP_02963426.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp. lactis HN019] gi|219682966|ref|YP_002469349.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium animalis subsp. lactis AD011] gi|241190543|ref|YP_002967937.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195949|ref|YP_002969504.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218942|gb|EDT89584.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp. lactis HN019] gi|219620616|gb|ACL28773.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium animalis subsp. lactis AD011] gi|240248935|gb|ACS45875.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250503|gb|ACS47442.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178278|gb|ADC85524.1| FtsH [Bifidobacterium animalis subsp. lactis BB-12] Length = 698 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 250 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRDLFDEA 306 >gi|182420046|ref|ZP_02951280.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237669537|ref|ZP_04529517.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376083|gb|EDT73670.1| putative Cell division protease FtsH [Clostridium butyricum 5521] gi|237654981|gb|EEP52541.1| cell division protease FtsH [Clostridium butyricum E4 str. BoNT E BL5262] Length = 601 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILLVGP G GKT +++ +A AG PF + + F E+ +VG Sbjct: 191 IPKGILLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVG 234 >gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A] gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A] gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A] Length = 697 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] Length = 765 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 219 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGMGASR-VRDLFEQA 275 >gi|329888406|ref|ZP_08267004.1| metalloprotease [Brevundimonas diminuta ATCC 11568] gi|328846962|gb|EGF96524.1| metalloprotease [Brevundimonas diminuta ATCC 11568] Length = 650 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 197 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253 >gi|271966202|ref|YP_003340398.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021] gi|270509377|gb|ACZ87655.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021] Length = 641 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+ +++VGP G GKT I+R +A A PF+ V + F E+ +VG + +RDL D A Sbjct: 220 PRGVIMVGPPGTGKTLIARAVAGEAAVPFLSVTGSAFVEM-FVGVGASR-VRDLFDEA 275 >gi|254385665|ref|ZP_05000988.1| cell division protein FtsH [Streptomyces sp. Mg1] gi|194344533|gb|EDX25499.1| cell division protein FtsH [Streptomyces sp. Mg1] Length = 673 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|152964507|ref|YP_001360291.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans SRS30216] gi|151359024|gb|ABS02027.1| ATP-dependent metalloprotease FtsH [Kineococcus radiotolerans SRS30216] Length = 659 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 255 >gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 676 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 202 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFETG 258 >gi|297159329|gb|ADI09041.1| cell division protein ftsH-like protein [Streptomyces bingchenggensis BCW-1] Length = 678 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 261 >gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 697 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 249 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 305 >gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 661 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|197103226|ref|YP_002128604.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1] gi|196480502|gb|ACG80029.1| ATP-dependent metalloprotease FtsH [Phenylobacterium zucineum HLK1] Length = 610 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 185 MPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 241 >gi|197106744|ref|YP_002132121.1| cell division protein FtsH [Phenylobacterium zucineum HLK1] gi|196480164|gb|ACG79692.1| cell division protein FtsH [Phenylobacterium zucineum HLK1] Length = 627 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT I+R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGALLIGPPGTGKTLIARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium longum NCC2705] gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium longum NCC2705] Length = 696 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304 >gi|315650241|ref|ZP_07903314.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] gi|315487486|gb|EFU77795.1| cell division protein FtsH [Eubacterium saburreum DSM 3986] Length = 608 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK I+LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 200 IPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 254 >gi|294672830|ref|YP_003573446.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella ruminicola 23] gi|294473076|gb|ADE82465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella ruminicola 23] Length = 737 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ +A R V A+ Q A L D+ P ++L VGPTGVGKT ++R LA+ G Sbjct: 453 IYGQDEAIRQVVEAV------QMSKAGLLDDNKPLASLLFVGPTGVGKTEVARVLAKELG 506 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++ +++++TE GY+G ++ D + N V Sbjct: 507 IALLRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 553 >gi|313893296|ref|ZP_07826871.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. oral taxon 158 str. F0412] gi|313442192|gb|EFR60609.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. oral taxon 158 str. F0412] Length = 815 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ DA AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDDAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1] Length = 606 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L + + ++ A+L PK LLVGP G GKT +++ +A Sbjct: 165 VAGQDEAKEALKEIVDFLHDPGKYAEIGANL-----PKGALLVGPPGTGKTLLAQAVAGE 219 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 A PF + ++F E+ +VG + +RDL A+ Sbjct: 220 AEVPFFSISGSEFVEM-FVGMGAAK-VRDLFSQAV 252 >gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 672 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp. BAL3] gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp. BAL3] Length = 654 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 196 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 252 >gi|159043664|ref|YP_001532458.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12] gi|157911424|gb|ABV92857.1| ATP-dependent metalloprotease FtsH [Dinoroseobacter shibae DFL 12] Length = 638 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|313906218|ref|ZP_07839564.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] gi|313468948|gb|EFR64304.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] Length = 622 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 189 MPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 245 >gi|299144251|ref|ZP_07037331.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518736|gb|EFI42475.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 623 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK A + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 184 VAGQDEAKEALTEIVDFLHNPKKYTKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 239 ADVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 270 >gi|291571747|dbj|BAI94019.1| cell division protein FtsH [Arthrospira platensis NIES-39] Length = 628 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 256 >gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68] gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68] Length = 696 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 248 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDLFDEA 304 >gi|24217184|ref|NP_714667.1| shikimic acid kinase I [Leptospira interrogans serovar Lai str. 56601] gi|45655682|ref|YP_003491.1| shikimate kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24202230|gb|AAN51682.1| shikimate kinase [Leptospira interrogans serovar Lai str. 56601] gi|45602653|gb|AAS72128.1| shikimate kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 179 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR 104 M KN L+GP GVGK+ ISR+L+++ G P + ++ EIG G ++ + I+ Sbjct: 1 MKKNFALIGPRGVGKSKISRKLSKITGMPVVSTDMIAVYEIG--GMSIPEFIQ 51 >gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] Length = 680 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|206889700|ref|YP_002248469.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741638|gb|ACI20695.1| metalloprotease FtsH [Thermodesulfovibrio yellowstonii DSM 11347] Length = 603 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVG G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 189 IPKGILLVGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 245 >gi|29831209|ref|NP_825843.1| cell division protein FtsH [Streptomyces avermitilis MA-4680] gi|29608323|dbj|BAC72378.1| putative cell division protein FtsH [Streptomyces avermitilis MA-4680] Length = 664 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|21221831|ref|NP_627610.1| cell division protein ftsH-like protein [Streptomyces coelicolor A3(2)] gi|256786989|ref|ZP_05525420.1| cell division protein ftsH-like protein [Streptomyces lividans TK24] gi|289770882|ref|ZP_06530260.1| cell division protein FtsH [Streptomyces lividans TK24] gi|4808343|emb|CAB42757.1| cell division protein ftsH homolog [Streptomyces coelicolor A3(2)] gi|289701081|gb|EFD68510.1| cell division protein FtsH [Streptomyces lividans TK24] Length = 668 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|119387548|ref|YP_918582.1| ATP-dependent metalloprotease FtsH [Paracoccus denitrificans PD1222] gi|119378123|gb|ABL72886.1| membrane protease FtsH catalytic subunit [Paracoccus denitrificans PD1222] Length = 610 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG F+ + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEAGVTFLSISGSEFVEL-FVGVGAAR-VRDLFEQA 244 >gi|307946409|ref|ZP_07661744.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp. TrichSKD4] gi|307770073|gb|EFO29299.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseibium sp. TrichSKD4] Length = 824 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 18/109 (16%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + +EL R + GQ DA +A A++ A LR+ P + L GPTGVGKT ++ Sbjct: 466 LSAELKRVVYGQNDAIDTLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVA 519 Query: 71 RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 R+LA G I+ +++++ E GYVG + ++ D VD Sbjct: 520 RQLASSLGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 568 >gi|209522887|ref|ZP_03271445.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] gi|209496936|gb|EDZ97233.1| ATP-dependent metalloprotease FtsH [Arthrospira maxima CS-328] Length = 651 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 223 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 279 >gi|294630627|ref|ZP_06709187.1| cell division protein [Streptomyces sp. e14] gi|292833960|gb|EFF92309.1| cell division protein [Streptomyces sp. e14] Length = 668 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4] Length = 524 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 117 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 173 >gi|291518252|emb|CBK73473.1| ATP-dependent metalloprotease FtsH [Butyrivibrio fibrisolvens 16/4] Length = 515 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ++LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 82 IPKGVILVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 134 >gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22] gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei 87.22] Length = 660 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|302553170|ref|ZP_07305512.1| cell division protein FtsH [Streptomyces viridochromogenes DSM 40736] gi|302470788|gb|EFL33881.1| cell division protein FtsH [Streptomyces viridochromogenes DSM 40736] Length = 669 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 249 >gi|296131747|ref|YP_003638994.1| ATP-dependent metalloprotease FtsH [Thermincola sp. JR] gi|296030325|gb|ADG81093.1| ATP-dependent metalloprotease FtsH [Thermincola potens JR] Length = 646 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|288921153|ref|ZP_06415441.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f] gi|288347462|gb|EFC81751.1| ATP-dependent metalloprotease FtsH [Frankia sp. EUN1f] Length = 751 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 253 >gi|281420562|ref|ZP_06251561.1| putative cell division protein FtsH [Prevotella copri DSM 18205] gi|281405335|gb|EFB36015.1| putative cell division protein FtsH [Prevotella copri DSM 18205] Length = 695 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + GQ+ AK+ V + + + Q DL ++ PK LLVGP G GKT +++ +A AG Sbjct: 201 VAGQEGAKQEVK-EIVDFLKNPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 258 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDL 106 PF + + F E+ +VG + +RDL Sbjct: 259 PFFSMSGSDFVEM-FVGVGASR-VRDL 283 >gi|331003929|ref|ZP_08327418.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411949|gb|EGG91349.1| hypothetical protein HMPREF0491_02280 [Lachnospiraceae oral taxon 107 str. F0167] Length = 608 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK I+LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 200 IPKGIILVGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 254 >gi|269128700|ref|YP_003302070.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM 43183] gi|268313658|gb|ACZ00033.1| ATP-dependent metalloprotease FtsH [Thermomonospora curvata DSM 43183] Length = 672 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] Length = 476 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 69 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 125 >gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense] gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense] Length = 647 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + F E+ YVG + IRDL A Sbjct: 206 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEV-YVGLGASR-IRDLFKEA 262 >gi|160902338|ref|YP_001567919.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95] gi|310943104|sp|A9BJK3|FTSH3_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|160359982|gb|ABX31596.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95] Length = 645 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 194 MPKGVLLVGEPGTGKTLLARAVAGEAGVPFFYISGSDFVEL-FVGVGAAR-VRDLFNQA 250 >gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis] Length = 691 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G+GKT ++R +A AG F ++F E+ +VG ++ +RDL A Sbjct: 255 LPKGVLLVGPPGIGKTLLARAIAGEAGVNFFNTSGSEFEEM-FVGLGAKR-VRDLFAAA 311 >gi|269957762|ref|YP_003327551.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM 15894] gi|269306443|gb|ACZ31993.1| ATP-dependent metalloprotease FtsH [Xylanimonas cellulosilytica DSM 15894] Length = 669 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|297201400|ref|ZP_06918797.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083] gi|197713809|gb|EDY57843.1| cell division protein FtsH [Streptomyces sviceus ATCC 29083] Length = 666 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|149072041|ref|YP_001293616.1| cell division protein [Rhodomonas salina] gi|134302992|gb|ABO70796.1| cell division protein [Rhodomonas salina] Length = 628 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A +G PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGESGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 696 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 222 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFETG 278 >gi|262196734|ref|YP_003267943.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365] gi|310943130|sp|D0LWB8|FTSH_HALO1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|262080081|gb|ACY16050.1| ATP-dependent metalloprotease FtsH [Haliangium ochraceum DSM 14365] Length = 682 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +L++GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 224 IPKGVLMMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 278 >gi|240144490|ref|ZP_04743091.1| negative regulator of genetic competence ClpC/mecB [Roseburia intestinalis L1-82] gi|257203477|gb|EEV01762.1| negative regulator of genetic competence ClpC/mecB [Roseburia intestinalis L1-82] Length = 815 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ + L + +IGQ+DA AVA A+R R R L+D P + L +GPTGVGKT Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTE 560 Query: 69 ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96 IS+ LA + I+V+++++ E GYVG Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602 >gi|322381175|ref|ZP_08055178.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae B-3650] gi|321154751|gb|EFX47022.1| hypothetical protein PL1_0087 [Paenibacillus larvae subsp. larvae B-3650] Length = 677 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 251 >gi|125974738|ref|YP_001038648.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum ATCC 27405] gi|256005251|ref|ZP_05430218.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 2360] gi|281418793|ref|ZP_06249812.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20] gi|125714963|gb|ABN53455.1| membrane protease FtsH catalytic subunit [Clostridium thermocellum ATCC 27405] gi|255990802|gb|EEU00917.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 2360] gi|281407877|gb|EFB38136.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum JW20] gi|316941872|gb|ADU75906.1| ATP-dependent metalloprotease FtsH [Clostridium thermocellum DSM 1313] Length = 599 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|114797326|ref|YP_758892.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC 15444] gi|114737500|gb|ABI75625.1| ATP-dependent metalloprotease FtsH [Hyphomonas neptunium ATCC 15444] Length = 639 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPKGALLVGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|167626375|ref|YP_001676875.1| microtubule-severing ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596376|gb|ABZ86374.1| Microtubule-severing ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 649 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 250 >gi|111225921|ref|YP_716715.1| cell division protein FtsH [Frankia alni ACN14a] gi|111153453|emb|CAJ65211.1| Cell division protein FtsH (ATP-dependent zinc-metallo protease) [Frankia alni ACN14a] Length = 739 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|86742989|ref|YP_483389.1| Mername-AA223 peptidase [Frankia sp. CcI3] gi|86569851|gb|ABD13660.1| membrane protease FtsH catalytic subunit [Frankia sp. CcI3] Length = 753 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|332000025|ref|NP_001193643.1| fidgetin-like protein 1 [Bos taurus] Length = 677 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A AGA F + + T +VG E+++R L VA Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492 >gi|146278243|ref|YP_001168402.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides ATCC 17025] gi|145556484|gb|ABP71097.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides ATCC 17025] Length = 783 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 471 RDLEKTLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 524 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA + G ++ +++++ E GYVG + ++ D VD + V Sbjct: 525 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 581 >gi|68478796|ref|XP_716560.1| hypothetical protein CaO19.1252 [Candida albicans SC5314] gi|68478899|ref|XP_716504.1| hypothetical protein CaO19.8836 [Candida albicans SC5314] gi|46438174|gb|EAK97509.1| hypothetical protein CaO19.8836 [Candida albicans SC5314] gi|46438231|gb|EAK97565.1| hypothetical protein CaO19.1252 [Candida albicans SC5314] Length = 687 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++ IR+L A Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313 >gi|323487347|ref|ZP_08092647.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum WAL-14163] gi|323694214|ref|ZP_08108390.1| cell division protein FtsH [Clostridium symbiosum WAL-14673] gi|323399392|gb|EGA91790.1| hypothetical protein HMPREF9474_04398 [Clostridium symbiosum WAL-14163] gi|323501687|gb|EGB17573.1| cell division protein FtsH [Clostridium symbiosum WAL-14673] Length = 592 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 183 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 239 >gi|313609585|gb|EFR85116.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes FSL F2-208] Length = 433 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 129 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 182 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 183 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 225 >gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] Length = 718 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|261885533|ref|ZP_06009572.1| atpase ec atp-dependent Zn protease [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 325 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L+VGP GVGKT I++ +A A PF F +I YVG +++ Sbjct: 188 MPKGVLMVGPPGVGKTLIAKAVAGEANVPFFYQSGASFVQI-YVGMGAKRV 237 >gi|257457970|ref|ZP_05623129.1| cell division protease FtsH homolog [Treponema vincentii ATCC 35580] gi|257444683|gb|EEV19767.1| cell division protease FtsH homolog [Treponema vincentii ATCC 35580] Length = 671 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A +G PF ++ + F E+ +VG + +RDL A Sbjct: 241 IPRGVLLVGPPGTGKTLLARAVAGESGVPFFRISGSDFVEM-FVGVGASR-VRDLFKQA 297 >gi|254993258|ref|ZP_05275448.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria monocytogenes FSL J2-064] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|241668806|ref|ZP_04756384.1| microtubule-severing ATPase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 649 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 250 >gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] Length = 587 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 180 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 236 >gi|170738633|ref|YP_001767288.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46] gi|168192907|gb|ACA14854.1| ATP-dependent metalloprotease FtsH [Methylobacterium sp. 4-46] Length = 640 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|75761782|ref|ZP_00741718.1| Cell division protein ftsH / Peptidase family M41 [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490732|gb|EAO54012.1| Cell division protein ftsH / Peptidase family M41 [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 267 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LLVGP G GKT ++R +A AG PF + + F E+ +VG Sbjct: 194 IPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVG 237 >gi|302559295|ref|ZP_07311637.1| cell division protein [Streptomyces griseoflavus Tu4000] gi|302476913|gb|EFL40006.1| cell division protein [Streptomyces griseoflavus Tu4000] Length = 668 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|224015872|ref|XP_002297581.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220967748|gb|EED86130.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 500 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A AG PF ++F E+ YVG ++ IR+L + A Sbjct: 50 LPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEV-YVGLGAKR-IRELFEAA 106 >gi|217964903|ref|YP_002350581.1| negative regulator of genetic competence ClpC/mecB [Listeria monocytogenes HCC23] gi|217334173|gb|ACK39967.1| negative regulator of genetic competence ClpC/mecB [Listeria monocytogenes HCC23] gi|307570538|emb|CAR83717.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria monocytogenes L99] Length = 724 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 420 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 473 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|254852492|ref|ZP_05241840.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503] gi|300764207|ref|ZP_07074202.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes FSL N1-017] gi|258605801|gb|EEW18409.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503] gi|300515197|gb|EFK42249.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes FSL N1-017] gi|328466890|gb|EGF37999.1| ATP-dependent protease [Listeria monocytogenes 1816] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|154148871|ref|YP_001406629.1| putative cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] gi|153804880|gb|ABS51887.1| putative Cell division protease FtsH-like protein [Campylobacter hominis ATCC BAA-381] Length = 561 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +L++GP GVGKT I++ +A AG PF F EI +VG +++ Sbjct: 195 LPKGVLMIGPPGVGKTLIAKAVAGEAGVPFFYQSGASFAEI-FVGVGAKRV 244 >gi|220927544|ref|YP_002504453.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10] gi|310943126|sp|B8I4B9|FTSH_CLOCE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|219997872|gb|ACL74473.1| ATP-dependent metalloprotease FtsH [Clostridium cellulolyticum H10] Length = 619 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712] Length = 672 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 259 >gi|312898242|ref|ZP_07757633.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359] gi|310620739|gb|EFQ04308.1| ATP-dependent metalloprotease [Megasphaera micronuciformis F0359] Length = 649 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN + + A + PK +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 160 LRNPAKYNAIGAKI-----PKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 213 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 214 FVGVGASR-VRDL 225 >gi|308049698|ref|YP_003913264.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas balearica DSM 9799] gi|307631888|gb|ADN76190.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ferrimonas balearica DSM 9799] Length = 758 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 22/114 (19%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 +E++ LDR + GQ A A+ A+R + L +E P N L GPTGV Sbjct: 451 KEVLENLDRNLKMVVFGQDPAIEALTAAIR------LARSGLGNEGKPVGNFLFAGPTGV 504 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 GKT ++++LAR G I+ +++++ E GYVG + ++ D V Sbjct: 505 GKTEVTQQLARQLGVELIRFDMSEYMERHSVSRLVGAPPGYVGYDQGGLLTDAV 558 >gi|296535580|ref|ZP_06897761.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] gi|296264096|gb|EFH10540.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] Length = 622 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGILLVGPPGTGKTLVARAIAGEAGVSFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|291538077|emb|CBL11188.1| ATPases with chaperone activity, ATP-binding subunit [Roseburia intestinalis XB6B4] Length = 815 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ + L + +IGQ+DA AVA A+R R R L+D P + L +GPTGVGKT Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPKRPIGSFLFLGPTGVGKTE 560 Query: 69 ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96 IS+ LA + I+V+++++ E GYVG Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602 >gi|291534335|emb|CBL07447.1| ATPases with chaperone activity, ATP-binding subunit [Roseburia intestinalis M50/1] Length = 815 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 21/102 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ + L + +IGQ+DA AVA A+R R R L+D P + L +GPTGVGKT Sbjct: 507 RKLEATLHKRVIGQEDAVSAVAKAVR-RGR-----VGLKDPRRPIGSFLFLGPTGVGKTE 560 Query: 69 ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96 IS+ LA + I+V+++++ E GYVG Sbjct: 561 ISKALAEAVFGSEQSMIRVDMSEYMEKHSVSKMIGSPPGYVG 602 >gi|290893448|ref|ZP_06556432.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J2-071] gi|290556949|gb|EFD90479.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J2-071] Length = 724 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 420 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 473 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|238881317|gb|EEQ44955.1| hypothetical protein CAWG_03255 [Candida albicans WO-1] Length = 687 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++ IR+L A Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313 >gi|237753269|ref|ZP_04583749.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430] gi|229375536|gb|EEO25627.1| zinc metallopeptidase [Helicobacter winghamensis ATCC BAA-430] Length = 642 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + PK +LLVGP G GKT +++ +A A PF V + F E+ Sbjct: 199 LKNPERYATLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 252 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 253 FVGVGASR-VRDLFENA 268 >gi|226223615|ref|YP_002757722.1| ATP-dependent protease [Listeria monocytogenes Clip81459] gi|225876077|emb|CAS04783.1| ATP-dependent protease [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|220925336|ref|YP_002500638.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS 2060] gi|219949943|gb|ACL60335.1| ATP-dependent metalloprotease FtsH [Methylobacterium nodulans ORS 2060] Length = 640 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|154174286|ref|YP_001408236.1| putative cell division protease FtsH-like protein [Campylobacter curvus 525.92] gi|112802796|gb|EAU00140.1| putative Cell division protease FtsH-like protein [Campylobacter curvus 525.92] Length = 556 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +L++GP GVGKT +++ +A A PF F +I YVG ++ +R+L + A Sbjct: 185 MPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQI-YVGMGAKR-VRELFNKA 241 >gi|330507066|ref|YP_004383494.1| AAA ATPase family protein [Methanosaeta concilii GP-6] gi|328927874|gb|AEB67676.1| AAA ATPase family protein associated with various cellular activities [Methanosaeta concilii GP-6] Length = 366 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 24/92 (26%) Query: 20 IIGQQDAKRAVAIALR--------NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISR 71 ++GQ++AKR V I + RW P+NIL G +G GKT I++ Sbjct: 121 VVGQEEAKRKVKIVEKYLSDPERFGRW-------------APRNILFYGVSGTGKTMIAK 167 Query: 72 RLARLAGAPFIKVEVTKFTEIG-YVGRNVEQI 102 L+ AG P + V+ T IG +VG QI Sbjct: 168 ALSAKAGVPMLAVKSTSL--IGEFVGEGARQI 197 >gi|254931380|ref|ZP_05264739.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262] gi|293582931|gb|EFF94963.1| ATP-dependent Clp protease [Listeria monocytogenes HPB2262] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|254877338|ref|ZP_05250048.1| ATP-dependent metalloprotease [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843359|gb|EET21773.1| ATP-dependent metalloprotease [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 639 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFDQA 240 >gi|241954902|ref|XP_002420172.1| subunit of the mitochondrial inner membrane i-AAA protease complex, putative [Candida dubliniensis CD36] gi|223643513|emb|CAX42394.1| subunit of the mitochondrial inner membrane i-AAA protease complex, putative [Candida dubliniensis CD36] Length = 687 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++ IR+L A Sbjct: 257 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 313 >gi|167856351|ref|ZP_02479079.1| cell division protease FtsH-like protein [Haemophilus parasuis 29755] gi|167852518|gb|EDS23804.1| cell division protease FtsH-like protein [Haemophilus parasuis 29755] Length = 645 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR+ + Q+L + PK IL+VGP G GKT +++ +A Sbjct: 159 VAGCDEAKEEVAEVVDFLRDPTKFQKLGGRI-----PKGILMVGPPGTGKTLLAKAIAGE 213 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL D A Sbjct: 214 ANVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 245 >gi|157737374|ref|YP_001490057.1| cell division protein FtsH [Arcobacter butzleri RM4018] gi|157699228|gb|ABV67388.1| cell division protein FtsH [Arcobacter butzleri RM4018] Length = 490 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I+R +A A PF F I YVG +++ Sbjct: 145 LPKGVLLVGPPGVGKTLIARAVAGEADVPFFYQSGASFVHI-YVGMGAKKV 194 >gi|46907229|ref|YP_013618.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria monocytogenes serotype 4b str. F2365] gi|254823731|ref|ZP_05228732.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194] gi|46880496|gb|AAT03795.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Listeria monocytogenes serotype 4b str. F2365] gi|293592952|gb|EFG00713.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|326202847|ref|ZP_08192714.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM 2782] gi|325986924|gb|EGD47753.1| ATP-dependent metalloprotease FtsH [Clostridium papyrosolvens DSM 2782] Length = 619 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 252 >gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM 14796] gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM 14796] Length = 627 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 188 IPRGVLLVGPPGCGKTLLARAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQAK 245 Query: 112 N 112 N Sbjct: 246 N 246 >gi|328475348|gb|EGF46121.1| ATP-dependent protease [Listeria monocytogenes 220] gi|332311405|gb|EGJ24500.1| ATP-dependent Clp protease [Listeria monocytogenes str. Scott A] Length = 722 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|325474420|gb|EGC77607.1| ATP-dependent Clp protease [Treponema denticola F0402] Length = 785 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L + I GQ A V A++ R R A R + P N L VGPTGVGKT +++ LA Sbjct: 491 LSKKIFGQDTAIEGVTKAVK-RSR-----AGFRSKDKPVANFLFVGPTGVGKTELAKTLA 544 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 G P ++ +++++ E V R Sbjct: 545 EELGIPLLRFDMSEYQEKHTVSR 567 >gi|303271193|ref|XP_003054958.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462932|gb|EEH60210.1| predicted protein [Micromonas pusilla CCMP1545] Length = 833 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK +L GP G GKT +++ +A AG PF ++F E +G + V + R DV Sbjct: 279 IPKGVLFEGPPGTGKTLLAKAVAGEAGVPFFYANGSEFVEMFVGVAAKRVRDLFRRARDV 338 Query: 110 AINIV 114 + +I+ Sbjct: 339 SPSII 343 >gi|148906545|gb|ABR16425.1| unknown [Picea sitchensis] Length = 1036 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 +P+ ILL GP G GKT ++R +AR G PF+ +F+E G Sbjct: 551 LPRGILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESG 592 >gi|42527627|ref|NP_972725.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema denticola ATCC 35405] gi|41818455|gb|AAS12644.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Treponema denticola ATCC 35405] Length = 785 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L + I GQ A V A++ R R A R + P N L VGPTGVGKT +++ LA Sbjct: 491 LSKKIFGQDTAIEGVTKAVK-RSR-----AGFRSKDKPVANFLFVGPTGVGKTELAKTLA 544 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 G P ++ +++++ E V R Sbjct: 545 EELGIPLLRFDMSEYQEKHTVSR 567 >gi|258592316|emb|CBE68625.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease [NC10 bacterium 'Dutch sediment'] Length = 603 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A A APF + + F E+ +VG + +RDL + Sbjct: 185 IPKGVLLMGPPGTGKTLLARAIAGEANAPFFSISGSDFVEM-FVGVGASR-VRDLFE 239 >gi|167465129|ref|ZP_02330218.1| Cell division protein ftsH [Paenibacillus larvae subsp. larvae BRL-230010] Length = 629 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 147 IPKGVLLNGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 203 >gi|307265667|ref|ZP_07547220.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919311|gb|EFN49532.1| Vesicle-fusing ATPase [Thermoanaerobacter wiegelii Rt8.B1] Length = 493 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 K ILL GP G GKT +++ A+ + FI ++F E+ Y G ++ +R+L + A N+ Sbjct: 97 KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETAKNL 154 Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167 R+ E + A I +E +D L K T+ + + + L DG SD EI+I Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208 Query: 168 EV 169 V Sbjct: 209 LV 210 >gi|281209066|gb|EFA83241.1| 26S protease regulatory subunit 6B [Polysphondylium pallidum PN500] Length = 411 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P E S++ I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT Sbjct: 152 PSESYSDIGGSDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 206 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 LAKAVAHHTSASFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 246 >gi|260911509|ref|ZP_05918097.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str. F0295] gi|260634373|gb|EEX52475.1| cell division protein FtsH [Prevotella sp. oral taxon 472 str. F0295] Length = 669 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + GQ+ AK+ V + + + Q DL ++ PK LLVGP G GKT +++ +A AG Sbjct: 197 VAGQEGAKQEVQ-EIVDFLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 254 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PF + + F E+ +VG + +RDL A Sbjct: 255 PFFSMSGSDFVEM-FVGVGASR-VRDLFHQA 283 >gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82] gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82] Length = 604 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253 >gi|242310140|ref|ZP_04809295.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489] gi|239523437|gb|EEQ63303.1| zinc metallopeptidase [Helicobacter pullorum MIT 98-5489] Length = 642 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + PK +LLVGP G GKT +++ +A A PF V + F E+ Sbjct: 199 LKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 252 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 253 FVGVGASR-VRDLFENA 268 >gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 672 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 292 >gi|194758523|ref|XP_001961511.1| GF14896 [Drosophila ananassae] gi|190615208|gb|EDV30732.1| GF14896 [Drosophila ananassae] Length = 383 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 24 QDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 Q+ + V + +R+R +RR QL PK +LL GP G GKT I++ +A+ AG F Sbjct: 105 QELRETVVLPVRHRELFRRSQLWR------APKGVLLHGPPGCGKTLIAKAIAKDAGMRF 158 Query: 82 IKVEVTKFTEIGY 94 I ++V T+ Y Sbjct: 159 INLDVAVLTDKWY 171 >gi|302836037|ref|XP_002949579.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f. nagariensis] gi|300264938|gb|EFJ49131.1| hypothetical protein VOLCADRAFT_89963 [Volvox carteri f. nagariensis] Length = 559 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LLVGP G GKT +++ +A AG PF + ++F E+ YVG + +R+L A Sbjct: 236 PAGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISASEFVEL-YVGMGAMR-VRELFAAA 291 >gi|240142553|ref|YP_002967066.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens AM1] gi|240012500|gb|ACS43725.1| protease, ATP-dependent zinc-metallo [Methylobacterium extorquens AM1] Length = 610 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|239929769|ref|ZP_04686722.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] gi|291438095|ref|ZP_06577485.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] gi|291340990|gb|EFE67946.1| cell division protein ftsH-like protein [Streptomyces ghanaensis ATCC 14672] Length = 668 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 248 >gi|229816586|ref|ZP_04446885.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM 13280] gi|229807921|gb|EEP43724.1| hypothetical protein COLINT_03644 [Collinsella intestinalis DSM 13280] Length = 747 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 246 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFTISGSEFVEM-FVGVGASR-VRDL 298 >gi|169830305|ref|YP_001716287.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis audaxviator MP104C] gi|169637149|gb|ACA58655.1| ATP-dependent metalloprotease FtsH [Candidatus Desulforudis audaxviator MP104C] Length = 620 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 247 >gi|162455574|ref|YP_001617941.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] gi|310943108|sp|A9EXK6|FTSH4_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 4 gi|161166156|emb|CAN97461.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] Length = 648 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +L++GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 197 IPKGVLMMGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 251 >gi|326389230|ref|ZP_08210798.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200] gi|325994593|gb|EGD53017.1| Vesicle-fusing ATPase [Thermoanaerobacter ethanolicus JW 200] Length = 493 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 K ILL GP G GKT +++ A+ + FI ++F E+ Y G ++ +R+L + A N+ Sbjct: 97 KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETAKNL 154 Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167 R+ E + A I +E +D L K T+ + + + L DG SD EI+I Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208 Query: 168 EV 169 V Sbjct: 209 LV 210 >gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] Length = 679 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 256 >gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo] gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia bovis] Length = 658 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP G GKT +++ +A A PFI +F EI +VG+ +++ Sbjct: 247 IPKGVLLVGPPGTGKTMLAKAVATEANIPFIYTSGPEFVEI-FVGQGAQRV 296 >gi|322378643|ref|ZP_08053079.1| cell division protein (ftsH) [Helicobacter suis HS1] gi|322379895|ref|ZP_08054181.1| cell division protein (ftsH) [Helicobacter suis HS5] gi|321147690|gb|EFX42304.1| cell division protein (ftsH) [Helicobacter suis HS5] gi|321148950|gb|EFX43414.1| cell division protein (ftsH) [Helicobacter suis HS1] Length = 645 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL ++A Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEM-FVGLGASR-VRDLFEIA 271 >gi|268316402|ref|YP_003290121.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252] gi|310946760|sp|D0MGU8|FTSH_RHOM4 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|262333936|gb|ACY47733.1| ATP-dependent metalloprotease FtsH [Rhodothermus marinus DSM 4252] Length = 697 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 243 LPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 295 >gi|256833317|ref|YP_003162044.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM 20603] gi|256686848|gb|ACV09741.1| ATP-dependent metalloprotease FtsH [Jonesia denitrificans DSM 20603] Length = 677 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFQQA 255 >gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] Length = 559 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F EI VG+ + +RDL VA Sbjct: 141 LPKGVLLVGPPGTGKTLLARAVAGEARVPFFHAAGPEFDEI-LVGQGARR-VRDLFKVA 197 >gi|153011781|ref|YP_001372994.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] gi|151563669|gb|ABS17165.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] Length = 610 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|153813437|ref|ZP_01966105.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174] gi|149830458|gb|EDM85550.1| hypothetical protein RUMOBE_03857 [Ruminococcus obeum ATCC 29174] Length = 633 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|150951427|ref|XP_001387744.2| mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases [Scheffersomyces stipitis CBS 6054] gi|149388585|gb|EAZ63721.2| mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases [Pichia stipitis CBS 6054] Length = 703 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++ IR+L A Sbjct: 273 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-IRELFSQA 329 >gi|118581289|ref|YP_902539.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] gi|310946754|sp|A1AT11|FTSH_PELPD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|118503999|gb|ABL00482.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] Length = 623 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL Sbjct: 206 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEM-FVGVGASR-VRDL 258 >gi|322712438|gb|EFZ04011.1| ATPase family AAA domain-containing protein 1 [Metarhizium anisopliae ARSEF 23] Length = 427 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N +I+R + +A Sbjct: 161 PSGVLLFGPPGCGKTMLAKALAHESGASFINLHISTMTEKWYGDSN--KIVRAVFSLA 216 >gi|148828042|ref|YP_001292795.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719284|gb|ABR00412.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 856 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIRRRR------AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|149234483|ref|XP_001523121.1| hypothetical protein LELG_05667 [Lodderomyces elongisporus NRRL YB-4239] gi|146453230|gb|EDK47486.1| hypothetical protein LELG_05667 [Lodderomyces elongisporus NRRL YB-4239] Length = 702 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++I Sbjct: 273 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 322 >gi|297616334|ref|YP_003701493.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus DSM 12680] gi|297144171|gb|ADI00928.1| ATP-dependent metalloprotease FtsH [Syntrophothermus lipocalidus DSM 12680] Length = 600 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLYGPPGTGKTLMARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFENA 245 >gi|295107774|emb|CBL21727.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162] Length = 630 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 198 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFKQA 254 >gi|255282855|ref|ZP_05347410.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255266629|gb|EET59834.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 641 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + GQ +AK ++ L+N + + + A PK LLVGP G GKT +++ +A Sbjct: 203 RDVAGQDEAKESLEEMVDYLKNPEKYRAIGAQ-----QPKGALLVGPPGTGKTLLAKAVA 257 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + ++F E+ +VG + +RDL A Sbjct: 258 GEAGVPFYHLTGSEFVEM-FVGVGASR-VRDLFQTA 291 >gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] Length = 604 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249 >gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 667 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 296 >gi|116074892|ref|ZP_01472153.1| cell division protein FtsH4 [Synechococcus sp. RS9916] gi|116068114|gb|EAU73867.1| cell division protein FtsH4 [Synechococcus sp. RS9916] Length = 606 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 177 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVEL-FVGVGASR-VRDL 229 >gi|116618213|ref|YP_818584.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097060|gb|ABJ62211.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 632 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 14/92 (15%) Query: 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGV 64 N PR L +IGQ A VA+ L NR A L D P++ L +GPTGV Sbjct: 289 LNLLPR-----LKSQVIGQDTALEKVAMKLTNR------EAGLADTSKPESFLFMGPTGV 337 Query: 65 GKTAISRRLA-RLAGAP--FIKVEVTKFTEIG 93 GKT +++LA L G FI+ ++++F G Sbjct: 338 GKTETAKQLALNLFGNKQNFIRFDMSEFKFAG 369 >gi|326803021|ref|YP_004320839.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae ACS-120-V-Col10a] gi|326650125|gb|AEA00308.1| ATP-dependent metallopeptidase HflB [Aerococcus urinae ACS-120-V-Col10a] Length = 716 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A A PF + ++F E+ +VG + +RDL D A Sbjct: 226 IPKGVLLEGPPGTGKTLLAKAVAGEANVPFYSISGSEFVEM-FVGVGASR-VRDLFDTA 282 >gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1] Length = 604 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249 >gi|226304114|ref|YP_002764072.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4] gi|310946759|sp|C0ZPK5|FTSH_RHOE4 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|226183229|dbj|BAH31333.1| ATP-dependent protease FtsH [Rhodococcus erythropolis PR4] Length = 854 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 186 LQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 239 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 240 FVGVGASR-VRDMFEQA 255 >gi|153812538|ref|ZP_01965206.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174] gi|149831463|gb|EDM86551.1| hypothetical protein RUMOBE_02937 [Ruminococcus obeum ATCC 29174] Length = 595 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK ++LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 178 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 232 >gi|146342770|ref|YP_001207818.1| cell division protein FtsH-like protein [Bradyrhizobium sp. ORS278] gi|146195576|emb|CAL79603.1| Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) [Bradyrhizobium sp. ORS278] Length = 618 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250 >gi|328885330|emb|CCA58569.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712] Length = 611 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 201 MPRGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 260 Query: 110 AINIV 114 A I+ Sbjct: 261 APAII 265 >gi|328542273|ref|YP_004302382.1| ATP-dependent metalloprotease FtsH [polymorphum gilvum SL003B-26A1] gi|326412022|gb|ADZ69085.1| ATP-dependent metalloprotease FtsH [Polymorphum gilvum SL003B-26A1] Length = 610 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] Length = 738 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R ++L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 189 LQNPARYERLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 243 FVGVGASR-VRDLFEKA 258 >gi|290969236|ref|ZP_06560761.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1 str. 28L] gi|290780742|gb|EFD93345.1| ATP-dependent metallopeptidase HflB [Megasphaera genomosp. type_1 str. 28L] Length = 646 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 187 IPKGVLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 239 >gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 604 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249 >gi|322504676|emb|CAM38449.2| putative mitochondrial ATP-dependent zinc metallopeptidase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 790 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58 K F F VS + + G +AK V L+ R Q L A L PK +LL Sbjct: 324 KSRFTFKREMSVSTRLKDVAGLTEAKHEVVEVIDFLKQPERYQALGAKL-----PKGVLL 378 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 GP GVGKT +++ +A A PF+ ++F E+ YVG ++ +R+L A N Sbjct: 379 DGPPGVGKTLLAKAVAGEAMVPFVSCSGSEFEEV-YVGVGAQR-VRELFREAHNC 431 >gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1] Length = 604 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253 >gi|260432833|ref|ZP_05786804.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter lacuscaerulensis ITI-1157] gi|260416661|gb|EEX09920.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter lacuscaerulensis ITI-1157] Length = 774 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A+A A++ A LR+ P N L GPTGVGKT Sbjct: 461 KDLEASLKRVVFGQDQAIEALASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 514 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 515 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 571 >gi|296488727|gb|DAA30840.1| fidgetin-like [Bos taurus] Length = 974 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A AGA F + + T +VG E+++R L VA Sbjct: 734 PKGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 789 >gi|309808773|ref|ZP_07702659.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 01V1-a] gi|308168009|gb|EFO70141.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 01V1-a] Length = 575 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 117 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 173 >gi|301121358|ref|XP_002908406.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4] gi|262103437|gb|EEY61489.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4] Length = 433 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 16/132 (12%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK +LL GP G GKT ++R A+ A F+K+ + ++ ++G +++RD A Sbjct: 207 PKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQM-FIGDGA-KLVRD----AFE 260 Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164 + +E +D+ R A I +E LDA+ K S REV R L DG S+ + Sbjct: 261 LAKEKCKDQNRGGAIIFIDE--LDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFTSNTK 318 Query: 165 IDIEVADTSSDI 176 I + A D+ Sbjct: 319 IKVIAATNRPDV 330 >gi|190348776|gb|EDK41301.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 678 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++I Sbjct: 252 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 301 >gi|159902789|ref|YP_001550133.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211] gi|159887965|gb|ABX08179.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9211] Length = 602 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 235 >gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] Length = 604 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL A Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDLFGQA 253 >gi|148253363|ref|YP_001237948.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1] gi|146405536|gb|ABQ34042.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 618 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 194 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 250 >gi|297172541|gb|ADI23511.1| hypothetical protein [uncultured Gemmatimonadales bacterium HF0770_41L09] Length = 827 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + I+GQQDA AV+ A+R R R A L+D P + + GPTGVGKT + R L Sbjct: 519 ELHKRIVGQQDAIEAVSRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELGRAL 572 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGR 97 A A I+V+++++ E V R Sbjct: 573 AEFLFADSEALIRVDMSEYMEKFSVSR 599 >gi|226324146|ref|ZP_03799664.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758] gi|225207695|gb|EEG90049.1| hypothetical protein COPCOM_01924 [Coprococcus comes ATCC 27758] Length = 578 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 167 IPKGVLLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEDA 223 >gi|224418720|ref|ZP_03656726.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] gi|253826750|ref|ZP_04869635.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491] gi|313142239|ref|ZP_07804432.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] gi|253510156|gb|EES88815.1| Cell division protein FtsH [Helicobacter canadensis MIT 98-5491] gi|313131270|gb|EFR48887.1| zinc metallopeptidase [Helicobacter canadensis MIT 98-5491] Length = 643 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + PK +LLVGP G GKT +++ +A A PF V + F E+ Sbjct: 200 LKNPERYAALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEANVPFFSVSGSSFIEM- 253 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 254 FVGVGASR-VRDLFENA 269 >gi|302797795|ref|XP_002980658.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii] gi|300151664|gb|EFJ18309.1| hypothetical protein SELMODRAFT_233533 [Selaginella moellendorffii] Length = 453 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ A AG PF+ + + FTE+ +VG + +RDL Sbjct: 20 IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSR-VRDL 72 >gi|302805623|ref|XP_002984562.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii] gi|300147544|gb|EFJ14207.1| hypothetical protein SELMODRAFT_234574 [Selaginella moellendorffii] Length = 453 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ A AG PF+ + + FTE+ +VG + +RDL Sbjct: 20 IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFTEM-FVGVGPSR-VRDL 72 >gi|307111340|gb|EFN59574.1| hypothetical protein CHLNCDRAFT_132927 [Chlorella variabilis] Length = 538 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP G GKT ++R +A AGA FI + ++F E+ +VG + +RDL Sbjct: 90 IPRGVLLCGPPGTGKTLLARAVAGEAGATFIALNASEFVEM-FVGVGASR-VRDL 142 >gi|126724795|ref|ZP_01740638.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150] gi|126705959|gb|EBA05049.1| ATPase AAA-2 [Rhodobacterales bacterium HTCC2150] Length = 884 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ+ A R+V+ A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 576 ELGRRVIGQKSAVRSVSNAVR-RAR-----AGLNDEARPLGSFLFLGPTGVGKTELTKAV 629 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A + +++++++F E V R Sbjct: 630 AEFLFDDDSAMVRIDMSEFMEKHAVAR 656 >gi|118580667|ref|YP_901917.1| ATP-dependent metalloprotease FtsH [Pelobacter propionicus DSM 2379] gi|118503377|gb|ABK99859.1| membrane protease FtsH catalytic subunit [Pelobacter propionicus DSM 2379] Length = 621 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 188 IPKGVLLMGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240 >gi|315653939|ref|ZP_07906855.1| cell division protein FtsH [Lactobacillus iners ATCC 55195] gi|315488635|gb|EFU78281.1| cell division protein FtsH [Lactobacillus iners ATCC 55195] Length = 681 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279 >gi|146412816|ref|XP_001482379.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 678 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++I Sbjct: 252 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 301 >gi|33239707|ref|NP_874649.1| cell division protein FtsH2 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237232|gb|AAP99301.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 599 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 176 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 232 >gi|329889201|ref|ZP_08267544.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas diminuta ATCC 11568] gi|328844502|gb|EGF94066.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Brevundimonas diminuta ATCC 11568] Length = 767 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 18/113 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66 S RE+ ++L R + GQ+ A V+ A++ A LRD P L GPTGVGK Sbjct: 455 SLRELETDLKRVVFGQEQAIDQVSAAMK------LARAGLRDPNKPIGAFLFSGPTGVGK 508 Query: 67 TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 T ++ +LA G + +++++ E GYVG + ++ D VD Sbjct: 509 TEVANQLAATLGIEMQRFDMSEYMERHTVSRLIGAPPGYVGHDQGGLLTDAVD 561 >gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] Length = 604 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK +LLVGP G GKT +++ +A + PF + ++F E+ +VG + +RDL Sbjct: 197 MPKGVLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEM-FVGMGASK-VRDL 249 >gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 673 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 242 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 298 >gi|194476614|ref|YP_002048793.1| cell division protein [Paulinella chromatophora] gi|171191621|gb|ACB42583.1| cell division protein [Paulinella chromatophora] Length = 620 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEANVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|167038506|ref|YP_001666084.1| microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038751|ref|YP_001661736.1| microtubule-severing ATPase [Thermoanaerobacter sp. X514] gi|256751376|ref|ZP_05492255.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1] gi|300913664|ref|ZP_07130981.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561] gi|307723321|ref|YP_003903072.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513] gi|320116902|ref|YP_004187061.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852991|gb|ABY91400.1| Microtubule-severing ATPase [Thermoanaerobacter sp. X514] gi|166857340|gb|ABY95748.1| Microtubule-severing ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749758|gb|EEU62783.1| Microtubule-severing ATPase [Thermoanaerobacter ethanolicus CCSD1] gi|300890349|gb|EFK85494.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X561] gi|307580382|gb|ADN53781.1| Vesicle-fusing ATPase [Thermoanaerobacter sp. X513] gi|319929993|gb|ADV80678.1| Vesicle-fusing ATPase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 490 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 14/122 (11%) Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 K ILL GP G GKT +++ A+ + FI ++F E+ Y G ++ +R+L + A N+ Sbjct: 97 KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFETARNL 154 Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167 R+ ++ A I +E +D L K T+ + + + L DG SD EI+I Sbjct: 155 ARKENKN----SAIIFIDE--IDILGAKRGTNESHHEYDQTLNQLLVEMDGIKSDGEINI 208 Query: 168 EV 169 V Sbjct: 209 LV 210 >gi|328545133|ref|YP_004305242.1| ATP-dependent metallopeptidase HflB subfamily [polymorphum gilvum SL003B-26A1] gi|326414875|gb|ADZ71938.1| ATP-dependent metallopeptidase HflB subfamily [Polymorphum gilvum SL003B-26A1] Length = 604 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 VPKGILLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 660 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 240 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDLFEQA 296 >gi|168334136|ref|ZP_02692345.1| ATP-dependent metalloprotease FtsH [Epulopiscium sp. 'N.t. morphotype B'] Length = 577 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 MPK ++ GP G GKT +++ LA+ A PF V + F ++ YVG + IR+L Sbjct: 180 MPKGLIFYGPPGTGKTMMAKALAKEANVPFFSVSGSDFMQM-YVGVGASR-IREL----- 232 Query: 112 NIVRESRRDE 121 RE+++ E Sbjct: 233 --FREAKKSE 240 >gi|139439224|ref|ZP_01772666.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC 25986] gi|133775248|gb|EBA39068.1| Hypothetical protein COLAER_01680 [Collinsella aerofaciens ATCC 25986] Length = 712 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 224 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 276 >gi|116750857|ref|YP_847544.1| ATP-dependent metalloprotease FtsH [Syntrophobacter fumaroxidans MPOB] gi|116699921|gb|ABK19109.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Syntrophobacter fumaroxidans MPOB] Length = 607 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG Sbjct: 188 MPKGVLLVGPPGTGKTLLARAVAGEASVPFFTISGSEFVEM-FVG 231 >gi|259501001|ref|ZP_05743903.1| cell division protein FtsH [Lactobacillus iners DSM 13335] gi|302190550|ref|ZP_07266804.1| ATP-dependent metalloprotease FtsH [Lactobacillus iners AB-1] gi|309803794|ref|ZP_07697880.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 11V1-d] gi|312871501|ref|ZP_07731594.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 3008A-a] gi|312872538|ref|ZP_07732606.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2062A-h1] gi|312874306|ref|ZP_07734338.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2052A-d] gi|259167695|gb|EEW52190.1| cell division protein FtsH [Lactobacillus iners DSM 13335] gi|308164203|gb|EFO66464.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 11V1-d] gi|311090179|gb|EFQ48591.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2052A-d] gi|311091900|gb|EFQ50276.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2062A-h1] gi|311092896|gb|EFQ51247.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 3008A-a] Length = 681 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279 >gi|145355383|ref|XP_001421942.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582181|gb|ABP00236.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 636 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF ++F E+ +VG + +RDL A Sbjct: 237 LPKGLLLVGPPGTGKTMLAKAVAGEAGVPFFYSSGSEFEEM-FVGVGARR-VRDLFKAA 293 >gi|297172680|gb|ADI23647.1| hypothetical protein [uncultured Gemmatimonadales bacterium HF4000_15H13] Length = 826 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + I+GQQDA A++ A+R R R A L+D P + + GPTGVGKT ++R L Sbjct: 518 ELHKRIVGQQDAIEAISRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELARAL 571 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGR 97 A A I+V+++++ E V R Sbjct: 572 AEFLFADRDALIRVDMSEYMEKFSVSR 598 >gi|313682138|ref|YP_004059876.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994] gi|313154998|gb|ADR33676.1| AAA ATPase central domain protein [Sulfuricurvum kujiense DSM 16994] Length = 555 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MP+ +LLVGP GVGKT I++ +A A PF F +I YVG +++ Sbjct: 189 MPRGVLLVGPPGVGKTMIAKAVAAEADVPFFYQSGASFVQI-YVGMGAKRV 238 >gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN] gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN] Length = 692 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ + L+N + +L + PK LLVGP G GKT +++ +A Sbjct: 198 VAGQEGAKQEIQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 252 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AGAPF + + F E+ +VG Sbjct: 253 AGAPFFSMSGSDFVEM-FVG 271 >gi|255020027|ref|ZP_05292100.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidithiobacillus caldus ATCC 51756] gi|254970556|gb|EET28045.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acidithiobacillus caldus ATCC 51756] Length = 750 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L I GQ A R ++ A++ A LR P + L GPTGVGKT +SR+L Sbjct: 452 DLSLVIFGQDRAIRELSAAIKMAR------AGLRHHEKPVGSFLFAGPTGVGKTELSRQL 505 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGR 97 A L G P ++ +++++ E V R Sbjct: 506 ATLLGIPLLRFDMSEYMERHTVSR 529 >gi|229494160|ref|ZP_04387923.1| cell division protease FtsH [Rhodococcus erythropolis SK121] gi|229318522|gb|EEN84380.1| cell division protease FtsH [Rhodococcus erythropolis SK121] Length = 850 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 177 LQNPARYQALGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 231 FVGVGASR-VRDMFEQA 246 >gi|254519309|ref|ZP_05131365.1| ATPase AAA-2 domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913058|gb|EEH98259.1| ATPase AAA-2 domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 745 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 SEL + I GQ A V ++ A L D+ P ++L VGPTGVGKT I+R Sbjct: 452 SELKKNIFGQNQAIEEVTRCIKMSR------AGLNDDNKPVASMLFVGPTGVGKTEIARV 505 Query: 73 LARLAGAPFIKVEVTKFTE 91 LA+ G ++ +++++ E Sbjct: 506 LAKTLGVDLVRFDMSEYGE 524 >gi|329920463|ref|ZP_08277195.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN 1401G] gi|328936139|gb|EGG32592.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN 1401G] Length = 681 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279 >gi|312874877|ref|ZP_07734896.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2053A-b] gi|325913172|ref|ZP_08175542.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B] gi|311089622|gb|EFQ48047.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LEAF 2053A-b] gi|325477593|gb|EGC80735.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 60-B] Length = 681 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279 >gi|16329797|ref|NP_440525.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492511|sp|P73179|FTSH1_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|1652282|dbj|BAA17205.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 665 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 243 IPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 299 >gi|309804710|ref|ZP_07698775.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 09V1-c] gi|309806990|ref|ZP_07700972.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 03V1-b] gi|309809579|ref|ZP_07703436.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN 2503V10-D] gi|325912455|ref|ZP_08174850.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 143-D] gi|308166102|gb|EFO68320.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 09V1-c] gi|308166610|gb|EFO68807.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners LactinV 03V1-b] gi|308170060|gb|EFO72096.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners SPIN 2503V10-D] gi|325475797|gb|EGC78968.1| ATP-dependent metallopeptidase HflB [Lactobacillus iners UPII 143-D] Length = 681 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL D A Sbjct: 223 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISASEFVEM-FVGVGASR-VRDLFDNA 279 >gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18] Length = 619 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL Sbjct: 207 VPKGILLVGPPGTGKTLLARAVAGEAGVNFFTISASQFIEM-FVGVGASR-VRDL 259 >gi|328954667|ref|YP_004372000.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans PW2] gi|328454991|gb|AEB06185.1| membrane protease FtsH catalytic subunit [Coriobacterium glomerans PW2] Length = 736 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 269 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 321 >gi|145349496|ref|XP_001419168.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579399|gb|ABO97461.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 560 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AGA F + ++F E+ +VG + +RDL A Sbjct: 95 VPKGVLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEM-FVGVGAAR-VRDLFQQA 151 >gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084] gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084] Length = 660 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +P +LLVGP G GKT +++ +A AG PF + + F E +G V + + +V Sbjct: 220 IPHGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKEV 279 Query: 110 AINIV 114 A +IV Sbjct: 280 APSIV 284 >gi|268679887|ref|YP_003304318.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946] gi|268617918|gb|ACZ12283.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 553 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ +A A PF F +I YVG +++ Sbjct: 187 LPKGVLLVGPPGVGKTMIAKAVAGEASVPFFYQSGATFVQI-YVGMGAKRV 236 >gi|162449912|ref|YP_001612279.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] gi|310943099|sp|A9FDV9|FTSH2_SORC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|161160494|emb|CAN91799.1| putative membrane bound zinc metallopeptidase [Sorangium cellulosum 'So ce 56'] Length = 607 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP+ +LLVGP G GKT ++R +A A PF ++F E+ +VG + +RDL A Sbjct: 187 MPRGVLLVGPPGTGKTLLARAIAGEASVPFFSASGSEFVEM-FVGVGAAR-VRDLFSQA 243 >gi|124024074|ref|YP_001018381.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303] gi|123964360|gb|ABM79116.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9303] Length = 615 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|307718729|ref|YP_003874261.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192] gi|306532454|gb|ADN01988.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192] Length = 619 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L+N + ++ A + PK +LLVG G GKT ++R +A Sbjct: 171 VAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLLARAVAGE 225 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 AG PF + + F E+ +VG + +RDL D Sbjct: 226 AGVPFFHMSGSDFVEM-FVGVGAAR-VRDLFD 255 >gi|302038046|ref|YP_003798368.1| cell division protease FtsH [Candidatus Nitrospira defluvii] gi|300606110|emb|CBK42443.1| Cell division protease FtsH [Candidatus Nitrospira defluvii] Length = 604 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +L+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 186 IPKGVLIVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE 240 >gi|227497061|ref|ZP_03927311.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM 15434] gi|226833458|gb|EEH65841.1| ATP-dependent metalloprotease FtsH [Actinomyces urogenitalis DSM 15434] Length = 721 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 245 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDLFEQA 301 >gi|146329099|ref|YP_001209564.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter nodosus VCS1703A] gi|146232569|gb|ABQ13547.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Dichelobacter nodosus VCS1703A] Length = 763 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 11/93 (11%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 R ++ L+R + GQ +A A+++A++ A LR++ P + L GPTGV Sbjct: 444 RNVLKTLERDLKTVVFGQDEAIHALSVAIKLSR------AGLREKEKPIASFLFTGPTGV 497 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GKT + R+LA + G ++ +++++ E V R Sbjct: 498 GKTEVCRQLAHVMGIKLLRFDMSEYMESHTVSR 530 >gi|332638690|ref|ZP_08417553.1| FtsH-2 peptidase [Weissella cibaria KACC 11862] Length = 687 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL D A Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDNA 281 >gi|332557735|ref|ZP_08412057.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides WS8N] gi|332275447|gb|EGJ20762.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides WS8N] Length = 771 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA + G ++ +++++ E GYVG + ++ D VD + V Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569 >gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] Length = 655 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 VPKGVLLVGPPGTGKTLMAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 261 >gi|37538489|gb|AAQ93011.1| FtsH-like protein precursor [Solanum lycopersicum] Length = 708 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLV P G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 286 IPKGCLLVDPPGTGKTLLARAVAGEAGVPFFSCAASEFVEL-FVGVGASR-VRDLFEKA 342 >gi|114706805|ref|ZP_01439705.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi HTCC2506] gi|114537753|gb|EAU40877.1| metalloprotease (cell division protein) FtsH [Fulvimarina pelagi HTCC2506] Length = 644 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|319781031|ref|YP_004140507.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166919|gb|ADV10457.1| ATP-dependent metalloprotease FtsH [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 642 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245 >gi|291276455|ref|YP_003516227.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198] gi|290963649|emb|CBG39481.1| membrane bound zinc metallopeptidase [Helicobacter mustelae 12198] Length = 631 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL ++A Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 259 >gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows witches'-broom phytoplasma AYWB] gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom phytoplasma AYWB] Length = 676 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + F E+ YVG + +RDL A Sbjct: 204 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEV-YVGVGASR-VRDLFKEA 260 >gi|47094004|ref|ZP_00231737.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes str. 4b H7858] gi|47017630|gb|EAL08430.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes str. 4b H7858] Length = 622 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA R VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 318 KNLESNLTGKVIGQEDAVRKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 371 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 372 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 414 >gi|255079830|ref|XP_002503495.1| predicted protein [Micromonas sp. RCC299] gi|226518762|gb|ACO64753.1| predicted protein [Micromonas sp. RCC299] Length = 1184 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R LA AG PF T+F E+ +VG + IR+L + A Sbjct: 557 IPMGVLLCGPPGTGKTLLARCLAGEAGVPFFACAGTEFMEM-FVGVGAAR-IRNLFNQA 613 >gi|254466814|ref|ZP_05080225.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacterales bacterium Y4I] gi|206687722|gb|EDZ48204.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacterales bacterium Y4I] Length = 774 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 461 KDLEKSLKRVVFGQDDAITALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 514 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 515 VAKQLADQLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 565 >gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514] gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514] Length = 567 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 16/103 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110 +PK +LL+GP G GKT +++ +A A A F V + FTE+ YVG ++ +R L A Sbjct: 184 LPKGVLLIGPPGTGKTMLAKAIAGEANANFFSVHGSDFTEV-YVGVGAKR-VRQLFKQAA 241 Query: 111 -----------INIVRESRRDEV--REQASINAEERILDALVG 140 I+ V ++R+ + +Q +INA +D G Sbjct: 242 KQQPSIIFIDEIDCVGKNRKFDTNGEQQQTINALLAAMDGFEG 284 >gi|152993642|ref|YP_001359363.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum sp. NBC37-1] gi|151425503|dbj|BAF73006.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfurovum sp. NBC37-1] Length = 729 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L +IIGQ +A +A A++ + P P + L VGPTGVGKTA++ +L Sbjct: 441 DLSAHIIGQNEAIEELATAIKRSYAGLNAPN------RPIGSFLFVGPTGVGKTALATQL 494 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNV 99 A F +++++++ E + R V Sbjct: 495 AETMHVHFERIDMSEYMEAHTISRLV 520 >gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B] gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus cellulolyticus 11B] Length = 654 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 183 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 239 >gi|308162675|gb|EFO65056.1| Midasin [Giardia lamblia P15] Length = 4835 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 11/113 (9%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----GYVGRNVEQIIRDLVDV- 109 +LLVGPTG+GKT + +AR G V ++ T+ GYV +++I+R+L D Sbjct: 352 LLLVGPTGIGKTTCLQVIARALGKKLHVVNMSSQTDTADLLGGYVPATLDRILRNLYDTI 411 Query: 110 --AINIVRESRRDE--VREQASINAEERILDALVG-KTATSNTREVFRKKLRD 157 ++ + R+++ V E AE+ I L +TA S ++V +K+ R+ Sbjct: 412 IGSLGLYISVRKNQTFVTELHKSYAEKDISKFLANCETALSGMKQVLKKETRE 464 >gi|268680380|ref|YP_003304811.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM 6946] gi|268618411|gb|ACZ12776.1| ATP-dependent metalloprotease FtsH [Sulfurospirillum deleyianum DSM 6946] Length = 643 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 217 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 273 >gi|119489291|ref|ZP_01622098.1| ATPase [Lyngbya sp. PCC 8106] gi|119454765|gb|EAW35910.1| ATPase [Lyngbya sp. PCC 8106] Length = 928 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L + +IGQQ+A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 605 QLESHLHQRVIGQQEAVAAVSAAIR-RAR-----AGMKDPSRPIGSFLFMGPTGVGKTEL 658 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA + I+++++++ E V R V Sbjct: 659 ARALAEFLFDSEDSLIRIDMSEYMEKHAVSRLV 691 >gi|46204752|ref|ZP_00049541.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 188 IPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 244 >gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii] gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii] Length = 858 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P+ +LLVGP G GKT +++ +A A PFI ++F E+ YVG ++ Sbjct: 402 PRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVEL-YVGMGASRV 450 >gi|255523432|ref|ZP_05390401.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296184714|ref|ZP_06853125.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] gi|255512890|gb|EET89161.1| ATP-dependent metalloprotease FtsH [Clostridium carboxidivorans P7] gi|296050496|gb|EFG89919.1| ATP-dependent metallopeptidase HflB [Clostridium carboxidivorans P7] Length = 613 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQEEAKESLIEIVDFLHNPKKYTDIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSISGSAFVEM-FVGMGASR-VRDLFEQA 253 >gi|33519575|ref|NP_878407.1| cell division protein FtsH [Candidatus Blochmannia floridanus] gi|33517238|emb|CAD83621.1| cell division protein FtsH [Candidatus Blochmannia floridanus] Length = 644 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILL+GP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 186 IPKGILLIGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242 >gi|300856978|ref|YP_003781962.1| putative ATP-dependent metalloprotease FtsH [Clostridium ljungdahlii DSM 13528] gi|300437093|gb|ADK16860.1| predicted ATP-dependent metalloprotease FtsH [Clostridium ljungdahlii DSM 13528] Length = 617 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 168 VAGQEEAKESLIEIVDFLHNSQKYVSIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 222 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 223 AKVPFFSISGSAFVEM-FVGMGASR-VRDLFKQA 254 >gi|124025672|ref|YP_001014788.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. NATL1A] gi|123960740|gb|ABM75523.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. NATL1A] Length = 640 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|124025019|ref|YP_001014135.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A] gi|123960087|gb|ABM74870.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL1A] Length = 615 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|72383431|ref|YP_292786.1| cell division protein FtsH2 [Prochlorococcus marinus str. NATL2A] gi|72003281|gb|AAZ59083.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. NATL2A] Length = 615 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii] gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii] Length = 857 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P+ +LLVGP G GKT +++ +A A PFI ++F E+ YVG ++ Sbjct: 401 PRGVLLVGPPGTGKTLLAKAVAGEASVPFISCSASEFVEL-YVGMGASRV 449 >gi|260467070|ref|ZP_05813250.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum WSM2075] gi|259029179|gb|EEW30475.1| ATP-dependent metalloprotease FtsH [Mesorhizobium opportunistum WSM2075] Length = 642 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245 >gi|119222383|gb|ABL62389.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222385|gb|ABL62390.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222387|gb|ABL62391.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222389|gb|ABL62392.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222391|gb|ABL62393.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222393|gb|ABL62394.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222395|gb|ABL62395.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 179 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 49 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 108 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 109 DTTNILFICGGAF 121 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 2 LARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 48 >gi|15893891|ref|NP_347240.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum ATCC 824] gi|15023472|gb|AAK78580.1|AE007575_4 ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum ATCC 824] gi|325508018|gb|ADZ19654.1| ATP-dependent zinc metallopeptidase FtsH (cell dividion protein) [Clostridium acetobutylicum EA 2018] Length = 621 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQEEAKESLVEIVDFLHNPNKYAEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSMSGSDFVEM-FVGMGAAR-VRDLFEQA 253 >gi|319646264|ref|ZP_08000494.1| ClpE protein [Bacillus sp. BT1B_CT2] gi|317392014|gb|EFV72811.1| ClpE protein [Bacillus sp. BT1B_CT2] Length = 698 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +E+ + L +IGQ++A + VA A+R R R A L+ + P + L VGPTGVGKT Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 452 Query: 69 ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97 +S+RLA L G I+++++++ E GYVG Sbjct: 453 LSKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGSPPGYVGH 495 >gi|315185669|gb|EFU19437.1| membrane protease FtsH catalytic subunit [Spirochaeta thermophila DSM 6578] Length = 619 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 10/92 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L+N + ++ A + PK +LLVG G GKT ++R +A Sbjct: 171 VAGQEEAKNELQEVVEFLKNPHKFTRMGARI-----PKGVLLVGMPGTGKTLLARAVAGE 225 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 AG PF + + F E+ +VG + +RDL D Sbjct: 226 AGVPFFHMSGSDFVEM-FVGVGAAR-VRDLFD 255 >gi|221638713|ref|YP_002524975.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides KD131] gi|221159494|gb|ACM00474.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides KD131] Length = 771 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA + G ++ +++++ E GYVG + ++ D VD + V Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569 >gi|254514304|ref|ZP_05126365.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma proteobacterium NOR5-3] gi|219676547|gb|EED32912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma proteobacterium NOR5-3] Length = 765 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ S L + GQ DA ++A +++ A LR P + LL GPTGVGKT Sbjct: 454 QKLESNLKMVVFGQDDAVTSLATSIK------MARAGLRGGDKPIGSFLLAGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA++ G I+ +++++ E V R Sbjct: 508 VTRQLAKILGLELIRFDMSEYMERHTVSR 536 >gi|33864065|ref|NP_895625.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313] gi|33635649|emb|CAE21973.1| cell division protein FtsH2 [Prochlorococcus marinus str. MIT 9313] Length = 615 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 192 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFEQA 248 >gi|77462844|ref|YP_352348.1| chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1] gi|126461737|ref|YP_001042851.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides ATCC 17029] gi|77387262|gb|ABA78447.1| Chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1] gi|126103401|gb|ABN76079.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Rhodobacter sphaeroides ATCC 17029] Length = 771 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 459 RDLEKTLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA + G ++ +++++ E GYVG + ++ D VD + V Sbjct: 513 VAKQLASILGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 569 >gi|52079919|ref|YP_078710.1| ATP-dependent Clp protease-like (class III stress gene) ClpE [Bacillus licheniformis ATCC 14580] gi|52785290|ref|YP_091119.1| ClpE [Bacillus licheniformis ATCC 14580] gi|52003130|gb|AAU23072.1| ATP-dependent Clp protease-like (class III stress gene) ClpE [Bacillus licheniformis ATCC 14580] gi|52347792|gb|AAU40426.1| ClpE [Bacillus licheniformis ATCC 14580] Length = 698 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +E+ + L +IGQ++A + VA A+R R R A L+ + P + L VGPTGVGKT Sbjct: 399 KELEAHLSSRVIGQKEAVKKVAKAVR-RSR-----AGLKSKNRPVGSFLFVGPTGVGKTE 452 Query: 69 ISRRLA-RLAGA--PFIKVEVTKFTE-----------IGYVGR 97 +S+RLA L G I+++++++ E GYVG Sbjct: 453 LSKRLAEELFGTKDAIIRLDMSEYMEKHAVSKLIGSPPGYVGH 495 >gi|13473326|ref|NP_104893.1| metalloprotease (cell division protein) FtsH [Mesorhizobium loti MAFF303099] gi|14024075|dbj|BAB50679.1| metalloprotease (cell division protein); FtsH [Mesorhizobium loti MAFF303099] Length = 642 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245 >gi|284054460|ref|ZP_06384670.1| cell division protein [Arthrospira platensis str. Paraca] Length = 75 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 6 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 62 >gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] Length = 651 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK R + L + ++ A L PK LLVGP G GKT +++ +A Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 266 >gi|119222209|gb|ABL62302.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222211|gb|ABL62303.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222213|gb|ABL62304.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222215|gb|ABL62305.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222217|gb|ABL62306.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222219|gb|ABL62307.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222221|gb|ABL62308.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222223|gb|ABL62309.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 156 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 24 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 83 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 84 DTTNILFICGGAF 96 >gi|150019592|ref|YP_001311846.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149906057|gb|ABR36890.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 710 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK +LLVGP G GKT I++ +A A PF + + F E +G V ++ +D V Sbjct: 203 LPKGVLLVGPPGTGKTLIAKAVAGEARVPFFSLSGSSFVEMFVGVGASRVRELFKDAVAK 262 Query: 110 AINIV 114 A I+ Sbjct: 263 APCII 267 >gi|253579752|ref|ZP_04857020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848751|gb|EES76713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 656 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 185 RDVAGQDEAKESLQEVVDFLHNPGKYTTIGAKL-----PKGALLVGPPGTGKTLLAKAVA 239 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL + A Sbjct: 240 GEAHVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273 >gi|221480992|gb|EEE19406.1| ftsH protease, putative [Toxoplasma gondii GT1] gi|221501714|gb|EEE27478.1| ftsH protease, putative [Toxoplasma gondii VEG] Length = 902 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILL GP G GKT ++R +A AG PF+ ++F E+ +VG Sbjct: 365 LPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVG 408 >gi|294655818|ref|XP_458013.2| DEHA2C07634p [Debaryomyces hansenii CBS767] gi|199430630|emb|CAG86073.2| DEHA2C07634p [Debaryomyces hansenii] Length = 670 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++I Sbjct: 238 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 287 >gi|119222125|gb|ABL62260.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222127|gb|ABL62261.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222129|gb|ABL62262.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222131|gb|ABL62263.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222133|gb|ABL62264.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222135|gb|ABL62265.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222137|gb|ABL62266.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222139|gb|ABL62267.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222141|gb|ABL62268.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222143|gb|ABL62269.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222145|gb|ABL62270.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222147|gb|ABL62271.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222149|gb|ABL62272.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222151|gb|ABL62273.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222153|gb|ABL62274.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222155|gb|ABL62275.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222157|gb|ABL62276.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222159|gb|ABL62277.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222161|gb|ABL62278.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222163|gb|ABL62279.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222165|gb|ABL62280.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222167|gb|ABL62281.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222169|gb|ABL62282.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222171|gb|ABL62283.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222173|gb|ABL62284.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222175|gb|ABL62285.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222177|gb|ABL62286.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222179|gb|ABL62287.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222181|gb|ABL62288.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222183|gb|ABL62289.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222185|gb|ABL62290.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222187|gb|ABL62291.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222189|gb|ABL62292.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222191|gb|ABL62293.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222193|gb|ABL62294.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222195|gb|ABL62295.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222197|gb|ABL62296.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222199|gb|ABL62297.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222201|gb|ABL62298.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222203|gb|ABL62299.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222205|gb|ABL62300.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222207|gb|ABL62301.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 153 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 21 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 81 DTTNILFICGGAF 93 >gi|114328415|ref|YP_745572.1| ATP-dependent Clp protease ATP-binding subunit clpA [Granulibacter bethesdensis CGDNIH1] gi|114316589|gb|ABI62649.1| ATP-dependent clp protease ATP-binding subunit clpA [Granulibacter bethesdensis CGDNIH1] Length = 851 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A++ A++ A LRD P N L GPTGVGKT Sbjct: 531 RTLERDLKAMVFGQDKAIEALSAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 584 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LA G I+ +++++ E GYVG + ++ D +D Sbjct: 585 VARQLATTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 635 >gi|94499671|ref|ZP_01306208.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65] gi|94428425|gb|EAT13398.1| ATP-binding protease component ClpA [Oceanobacter sp. RED65] Length = 757 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 11/99 (11%) Query: 4 TFNFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58 T N ++ + +LD+ + GQ +A +A A++ A L+ E P + L Sbjct: 441 TVNMDDKKTLMDLDKNMKMMVYGQDEAITELATAIKMSR------AGLKAEEKPIGSFLF 494 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GPTGVGKT ++R+LA + G ++ +++++ E V R Sbjct: 495 AGPTGVGKTEVTRQLAHVMGMELVRFDMSEYMEAHTVSR 533 >gi|75906365|ref|YP_320661.1| ATPase [Anabaena variabilis ATCC 29413] gi|75700090|gb|ABA19766.1| ATPase [Anabaena variabilis ATCC 29413] Length = 876 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L + +IGQQ+A AV+ A+R R R A ++D P + L +GPTGVGKT + Sbjct: 570 QLESHLHQRVIGQQEAVEAVSAAIR-RAR-----AGMKDPNRPIGSFLFMGPTGVGKTEL 623 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 +R LA+ + ++++++++ E V R V Sbjct: 624 ARALAQFLFDSDDALVRLDMSEYMEKHSVSRLV 656 >gi|110635496|ref|YP_675704.1| membrane protease FtsH catalytic subunit [Mesorhizobium sp. BNC1] gi|110286480|gb|ABG64539.1| membrane protease FtsH catalytic subunit [Chelativorans sp. BNC1] Length = 645 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ D A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245 >gi|154497127|ref|ZP_02035823.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC 29799] gi|150273526|gb|EDN00654.1| hypothetical protein BACCAP_01420 [Bacteroides capillosus ATCC 29799] Length = 764 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK ++ L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 263 VAGQDEAKESLVEIIDFLHNPQKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 317 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ YVG + +RDL Sbjct: 318 ANVPFFSISGSDFVEM-YVGVGASR-VRDL 345 >gi|145500528|ref|XP_001436247.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124403386|emb|CAK68850.1| unnamed protein product [Paramecium tetraurelia] Length = 652 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R LA AG F + ++F E+ +VG Q +R+L A Sbjct: 253 LPKGILLVGPPGSGKTLLARALAGEAGCSFFQKSGSEFDEM-FVGVGA-QRVRELFQNA 309 >gi|150014992|ref|YP_001307246.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149901457|gb|ABR32290.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 602 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVG 234 >gi|228982671|ref|ZP_04142930.1| Cell division protease FtsH [Bacillus thuringiensis Bt407] gi|228776854|gb|EEM25162.1| Cell division protease FtsH [Bacillus thuringiensis Bt407] Length = 568 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LL GP G GKT I++ LA A PF + + F E +VG + +RDL + A Sbjct: 168 MPKGVLLYGPPGTGKTLIAKALAGEAKVPFFSISGSDFIE-KFVGVGASR-VRDLFENA 224 >gi|86136457|ref|ZP_01055036.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. MED193] gi|85827331|gb|EAQ47527.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. MED193] Length = 776 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 463 KDLEKSLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 517 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 567 >gi|332669078|ref|YP_004452086.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484] gi|332338116|gb|AEE44699.1| ATP-dependent metalloprotease FtsH [Cellulomonas fimi ATCC 484] Length = 684 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 200 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 256 >gi|194368144|gb|ACF57964.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 150 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 22 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 81 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 82 DTTNILFICGGAF 94 >gi|159028807|emb|CAO89978.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 795 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 21/100 (21%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 S+L IIGQQ+A AV+ A+R R R +L++ P + + GPTGVGKT +++ Sbjct: 471 SQLHERIIGQQEAVNAVSRAIR-RAR-----VNLKNPNRPIASFIFAGPTGVGKTELTKA 524 Query: 73 LARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98 LA+L + + I++++++F E GY+G N Sbjct: 525 LAKLLFGSESSMIRLDMSEFMESHTVSKLIGAPPGYIGYN 564 >gi|119222357|gb|ABL62376.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222359|gb|ABL62377.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222361|gb|ABL62378.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222363|gb|ABL62379.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222365|gb|ABL62380.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222367|gb|ABL62381.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222369|gb|ABL62382.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222441|gb|ABL62418.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222443|gb|ABL62419.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222445|gb|ABL62420.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222447|gb|ABL62421.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222449|gb|ABL62422.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222451|gb|ABL62423.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 177 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 47 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 106 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 107 DTTNILFICGGAF 119 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 AR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 1 ARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 46 >gi|72382133|ref|YP_291488.1| FtsH peptidase [Prochlorococcus marinus str. NATL2A] gi|72001983|gb|AAZ57785.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. NATL2A] Length = 640 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 674 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + F E+ YVG + +RDL A Sbjct: 204 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEV-YVGVGASR-VRDLFKEA 260 >gi|32265608|ref|NP_859640.1| ATP-dependent Clp protease ClpA [Helicobacter hepaticus ATCC 51449] gi|54035810|sp|Q7VJY3|CLPB_HELHP RecName: Full=Chaperone protein ClpB gi|32261656|gb|AAP76706.1| ATP-dependent CLP protease ClpA [Helicobacter hepaticus ATCC 51449] Length = 859 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 12/93 (12%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ DA +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 564 IESELAKSVVGQDDAIKAIARAIKRNK-------AGLNDASRPIGSFLFLGPTGVGKTQC 616 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 ++ LA ++++++++ E V R V Sbjct: 617 AKTLAEFLFDNAKSLVRIDMSEYMEKHAVSRLV 649 >gi|239907761|ref|YP_002954502.1| cell division protein FtsH [Desulfovibrio magneticus RS-1] gi|239797627|dbj|BAH76616.1| cell division protein FtsH [Desulfovibrio magneticus RS-1] Length = 612 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK +LLVGP G GKT ++R +A A PF + ++F E+ +VG Sbjct: 193 MPKGVLLVGPPGTGKTLLARAVAGEAQVPFFSISGSEFVEM-FVG 236 >gi|229829756|ref|ZP_04455825.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM 14600] gi|229791745|gb|EEP27859.1| hypothetical protein GCWU000342_01853 [Shuttleworthia satelles DSM 14600] Length = 633 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ++LVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 208 IPKGVILVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 260 >gi|226954271|ref|ZP_03824735.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244] gi|294650475|ref|ZP_06727834.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein [Acinetobacter haemolyticus ATCC 19194] gi|226834999|gb|EEH67382.1| ATP-binding protease component [Acinetobacter sp. ATCC 27244] gi|292823618|gb|EFF82462.1| ATP-dependent Clp protease ATP-binding subunit ClpA family protein [Acinetobacter haemolyticus ATCC 19194] Length = 761 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 16/104 (15%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 +L R + GQ +A A+A A++ R L A + + + GPTGVGKT ++++LA Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGSFVFAGPTGVGKTEVTKQLA 508 Query: 75 RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 +L G F++ +++++ E GYVG + ++ D + Sbjct: 509 KLLGVEFVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 552 >gi|119222317|gb|ABL62356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222353|gb|ABL62374.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 149 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 21 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 81 DTTNILFICGGAF 93 >gi|330809354|ref|YP_004353816.1| cell division protein ftsH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377462|gb|AEA68812.1| putative cell division protein ftsH [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 608 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + + DL + A Sbjct: 188 IPKGTLLVGPPGTGKTLVAKAIAGEAGVPFFSISGSEFVEM-FVGVGAAR-VHDLFEQA 244 >gi|254430431|ref|ZP_05044134.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001] gi|197624884|gb|EDY37443.1| cell division protein FtsH3 [Cyanobium sp. PCC 7001] Length = 627 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 203 IPKGVLLVGPPGTGKTLLSKAVAGEASVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 259 >gi|160947241|ref|ZP_02094408.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270] gi|158446375|gb|EDP23370.1| hypothetical protein PEPMIC_01174 [Parvimonas micra ATCC 33270] Length = 651 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 193 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEEA 249 >gi|154318948|ref|XP_001558792.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10] gi|150857993|gb|EDN33185.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10] Length = 418 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 47/226 (20%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-- 110 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N +++R + +A Sbjct: 150 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN--KLVRAVFSLARK 207 Query: 111 ----------INIVRESRRDEVREQASINAEE--RILDALVGKT------------ATSN 146 I+ V RR E + + E + D L AT+ Sbjct: 208 LQPSIVFIDEIDAVLGQRRSGEHEASGMVKAEFMTLWDGLTSSNKSGLPARIMILGATNR 267 Query: 147 TREV-----------FRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSEL 195 +++ F L + +++ + DT +D +NFDI L+ + Sbjct: 268 IQDIDEAILRRMPKKFPVSLPSNSQRRRILNLILKDTKTDPNNFDIE--------YLTRV 319 Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMV 241 + + GS K+ R + E +R++ +R + M V +++ V Sbjct: 320 MAGMSGSDIKEACRDAAMVPVREFIREQRERGMSMSGVDHSNVRGV 365 >gi|145545762|ref|XP_001458565.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426385|emb|CAK91168.1| unnamed protein product [Paramecium tetraurelia] Length = 710 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + +QL A + P+ LL GP G GKT +++ A AG PF V ++F E+ Sbjct: 275 LTNSKKFKQLGAKI-----PRGALLTGPPGTGKTMLAKACAGEAGVPFFYVSGSEFVEM- 328 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 329 FVGLGASR-VRDLFEQA 344 >gi|119222453|gb|ABL62424.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222455|gb|ABL62425.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222457|gb|ABL62426.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222459|gb|ABL62427.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222461|gb|ABL62428.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222463|gb|ABL62429.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222465|gb|ABL62430.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222467|gb|ABL62431.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 178 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 48 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 107 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 108 DTTNILFICGGAF 120 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRR 119 LAR+ PF + T TE GYVG +VE II +L+ A + + ++R Sbjct: 1 LARILNVPFTIADATCLTEAGYVGEDVENIIVNLLQAADHDIERAQR 47 >gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 651 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK R + L + ++ A L PK LLVGP G GKT +++ +A Sbjct: 180 VAGQEEAKEALREIVDFLHKPKKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVASE 234 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL A Sbjct: 235 AEVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 266 >gi|298674165|ref|YP_003725915.1| AAA ATPase central domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287153|gb|ADI73119.1| AAA ATPase central domain protein [Methanohalobium evestigatum Z-7303] Length = 360 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 14/87 (16%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 +IGQ +A++ + L N D + P+NIL GP+G GKT +++ LA Sbjct: 113 VIGQDNARKKCKLVEKFLEN--------PDKFGKWAPRNILFYGPSGTGKTMLAKGLANK 164 Query: 77 AGAPFIKVEVTKFTEIG-YVGRNVEQI 102 P I ++ T+ IG YVG +QI Sbjct: 165 TDVPIITIKATEL--IGEYVGEGAKQI 189 >gi|288927650|ref|ZP_06421497.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str. F0108] gi|288330484|gb|EFC69068.1| cell division protein FtsH [Prevotella sp. oral taxon 317 str. F0108] Length = 667 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + GQ+ AK+ V + + Q DL ++ PK LLVGP G GKT +++ +A AG Sbjct: 197 VAGQEGAKQEVQ-EIVEFLKSPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 254 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PF + + F E+ +VG + +RDL A Sbjct: 255 PFFSMSGSDFVEM-FVGVGASR-VRDLFHQA 283 >gi|237844855|ref|XP_002371725.1| ftsH protease, putative [Toxoplasma gondii ME49] gi|211969389|gb|EEB04585.1| ftsH protease, putative [Toxoplasma gondii ME49] Length = 902 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILL GP G GKT ++R +A AG PF+ ++F E+ +VG Sbjct: 365 LPKGILLQGPPGTGKTLLARAIAGEAGVPFLHASGSEFEEM-FVG 408 >gi|148242501|ref|YP_001227658.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147850811|emb|CAK28305.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 639 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 212 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 264 >gi|83595069|ref|YP_428821.1| shikimate kinase [Rhodospirillum rubrum ATCC 11170] gi|124053399|sp|Q2RMW1|AROK_RHORT RecName: Full=Shikimate kinase; Short=SK gi|83577983|gb|ABC24534.1| shikimate kinase [Rhodospirillum rubrum ATCC 11170] Length = 188 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 26/35 (74%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 +P+ ++LVG G GKT I RRLA++AG PF+ +V Sbjct: 11 LPRTLVLVGLMGAGKTCIGRRLAQMAGVPFVDADV 45 >gi|297171669|gb|ADI22663.1| hypothetical protein [uncultured Gemmatimonadales bacterium HF0500_22O06] Length = 827 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + I+GQQDA AV+ A+R R R A L+D P + + GPTGVGKT + R L Sbjct: 519 ELHKRIVGQQDAIEAVSRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELGRAL 572 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGR 97 A A I+++++++ E V R Sbjct: 573 AEFLFADSEALIRIDMSEYMEKFSVSR 599 >gi|297811665|ref|XP_002873716.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319553|gb|EFH49975.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 685 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 255 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNRA 311 >gi|269958447|ref|YP_003328234.1| putative protease [Anaplasma centrale str. Israel] gi|269848276|gb|ACZ48920.1| putative protease [Anaplasma centrale str. Israel] Length = 610 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++R + Q+L + PK LL+GP G GKT ++R +A A PF + + F E+ Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVD 108 +VG + +RD+ + Sbjct: 231 FVGVGASR-VRDMFE 244 >gi|255280565|ref|ZP_05345120.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255269030|gb|EET62235.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 694 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 191 VAGQDEAKESLQEVVDFLENPGKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 245 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A APF + ++F E+ +VG + +R+L + A Sbjct: 246 AHAPFFSLSGSEFVEM-FVGVGASR-VRELFEEA 277 >gi|207111392|ref|ZP_03245554.1| cell division protein [Helicobacter pylori HPKX_438_CA4C1] Length = 52 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LL+GP GVGKT I++ LA A PF + F++I YVG Sbjct: 7 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYESGSAFSQI-YVG 51 >gi|156082435|ref|XP_001608702.1| ATPase, AAA family domain containing protein [Babesia bovis T2Bo] gi|154795951|gb|EDO05134.1| ATPase, AAA family domain containing protein [Babesia bovis] Length = 671 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%) Query: 30 VAIALRNRWRRQQLPADLRDELM--PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 V L+N+ + L +L L+ PK +LL GP G GKT +++ +A +AGA +V + Sbjct: 400 VKKTLKNKVAQPILRPELHTGLLRAPKGVLLFGPPGTGKTTLAKWIANVAGATCFEVSPS 459 Query: 88 KFTEIGYVGRNVEQIIRDLVDVA 110 T Y G + E II+ L VA Sbjct: 460 SITS-KYHGES-ESIIKALFKVA 480 >gi|308807062|ref|XP_003080842.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1| cell division prot (ISS) [Ostreococcus tauri] gi|116059303|emb|CAL55010.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1| cell division prot (ISS) [Ostreococcus tauri] Length = 891 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AGA F + ++F E+ +VG + +RDL A Sbjct: 439 VPKGVLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEM-FVGVGAAR-VRDLFQQA 495 >gi|50955660|ref|YP_062948.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952142|gb|AAT89843.1| cell division protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 667 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 196 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 252 >gi|330840857|ref|XP_003292425.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum] gi|325077347|gb|EGC31066.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum] Length = 405 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P E S++ I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT Sbjct: 147 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 201 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 202 LAKAVAHHTSAAFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 241 >gi|320583258|gb|EFW97473.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease [Pichia angusta DL-1] Length = 715 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L GP G GKT +++ A AG PF+ V ++F E+ YVG + +RDL A Sbjct: 277 IPKGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-YVGVGASR-VRDLFSTA 333 >gi|259505904|ref|ZP_05748806.1| cell division protein HflB [Corynebacterium efficiens YS-314] gi|259166508|gb|EEW51062.1| cell division protein HflB [Corynebacterium efficiens YS-314] Length = 328 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L + R Q L A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 184 LEDPTRYQDLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM- 237 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 238 FVGVGASR-VRDLFKQA 253 >gi|134094400|ref|YP_001099475.1| cell division protease [Herminiimonas arsenicoxydans] gi|133738303|emb|CAL61348.1| Cell division protease [Herminiimonas arsenicoxydans] Length = 635 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + P+ +LLVGP G GKT ++R +A A PF + + F E+ Sbjct: 176 LRDPTRFQKLGGRI-----PRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM- 229 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ D A Sbjct: 230 FVGVGASR-VRDMFDNA 245 >gi|119222289|gb|ABL62342.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222291|gb|ABL62343.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222293|gb|ABL62344.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222295|gb|ABL62345.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222297|gb|ABL62346.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222299|gb|ABL62347.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222301|gb|ABL62348.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222303|gb|ABL62349.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222305|gb|ABL62350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222307|gb|ABL62351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222309|gb|ABL62352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222311|gb|ABL62353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222313|gb|ABL62354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222315|gb|ABL62355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222319|gb|ABL62357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222321|gb|ABL62358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222323|gb|ABL62359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222325|gb|ABL62360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222327|gb|ABL62361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222329|gb|ABL62362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222331|gb|ABL62363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222333|gb|ABL62364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222335|gb|ABL62365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222337|gb|ABL62366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222339|gb|ABL62367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222341|gb|ABL62368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222343|gb|ABL62369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222345|gb|ABL62370.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222347|gb|ABL62371.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222349|gb|ABL62372.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222351|gb|ABL62373.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222355|gb|ABL62375.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 149 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 21 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 80 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 81 DTTNILFICGGAF 93 >gi|186470797|ref|YP_001862115.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] gi|310943122|sp|B2JVU2|FTSH_BURP8 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|184197106|gb|ACC75069.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] Length = 645 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 191 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247 >gi|81299807|ref|YP_400015.1| FtsH peptidase [Synechococcus elongatus PCC 7942] gi|81168688|gb|ABB57028.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 632 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDL 252 >gi|33240371|ref|NP_875313.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237898|gb|AAP99965.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 638 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|209543912|ref|YP_002276141.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl 5] gi|209531589|gb|ACI51526.1| ATP-dependent chaperone ClpB [Gluconacetobacter diazotrophicus PAl 5] Length = 867 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R ++GQ+ A +AVA A+R R R A L+D P + L +GPTGVGKT + + L Sbjct: 569 ELRRSVVGQEPALKAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELCKAL 622 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++V++++F E V R Sbjct: 623 ARFLFDDEKALLRVDMSEFMEKHAVSR 649 >gi|254995321|ref|ZP_05277511.1| cell division protein (ftsH) [Anaplasma marginale str. Mississippi] Length = 610 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++R + Q+L + PK LL+GP G GKT ++R +A A PF + + F E+ Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVD 108 +VG + +RD+ + Sbjct: 231 FVGVGASR-VRDMFE 244 >gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter subterraneus DSM 13965] gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter subterraneus DSM 13965] Length = 614 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|295397832|ref|ZP_06807896.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] gi|294973929|gb|EFG49692.1| cell division protein FtsH [Aerococcus viridans ATCC 11563] Length = 721 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 232 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSEFVEM-FVGVGASR-VRDLFENA 288 >gi|126739846|ref|ZP_01755537.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. SK209-2-6] gi|126719078|gb|EBA15789.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseobacter sp. SK209-2-6] Length = 743 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ DA A++ A++ A LR+ P N L GPTGVGKT Sbjct: 430 KDLEKTLKRVVFGQDDAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 483 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 484 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 534 >gi|19112067|ref|NP_595275.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe 972h-] gi|74675997|sp|O43078|SUR2_SCHPO RecName: Full=Protein sur2 gi|2894288|emb|CAA17029.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe] Length = 660 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G DAK ++ A+ + R +L LR+ + + +LL GP G GKT ++R +A A A Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQGLREPV--QGMLLFGPPGTGKTMLARAVATEAKA 438 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T Y+G + E+++R L +VA Sbjct: 439 TFFSISASSLTS-KYLG-DSEKLVRALFEVA 467 >gi|56750555|ref|YP_171256.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|56685514|dbj|BAD78736.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] Length = 632 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDL 252 >gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9313] gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str. MIT 9313] Length = 638 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|310658246|ref|YP_003935967.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii DSM 519] gi|308825024|emb|CBH21062.1| protease, ATP-dependent zinc-metallo [Clostridium sticklandii] Length = 656 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +S+ +A A PF + + F E+ +VG + +RDL + A Sbjct: 194 IPKGILMVGPPGTGKTYLSKAVAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 250 >gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis] gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis] Length = 752 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 349 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 405 >gi|152990129|ref|YP_001355851.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor sp. SB155-2] gi|151421990|dbj|BAF69494.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Nitratiruptor sp. SB155-2] Length = 729 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 15/93 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-----ILLVGPTGV 64 + + +L ++GQ++A +A+A++ R L P N L VGPTGV Sbjct: 437 KNLEEKLKERVLGQEEAVEQLAMAIKRS----------RAGLNPPNKPIGSFLFVGPTGV 486 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GKT +++ LAR G F + +++++ E V R Sbjct: 487 GKTELAKELARTMGVHFERFDMSEYMEKHAVSR 519 >gi|148708697|gb|EDL40644.1| fidgetin-like 1, isoform CRA_a [Mus musculus] Length = 701 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 461 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 516 >gi|56417151|ref|YP_154225.1| cell division protein [Anaplasma marginale str. St. Maries] gi|222475516|ref|YP_002563933.1| cell division protein (ftsH) [Anaplasma marginale str. Florida] gi|255003503|ref|ZP_05278467.1| cell division protein (ftsH) [Anaplasma marginale str. Puerto Rico] gi|255004625|ref|ZP_05279426.1| cell division protein (ftsH) [Anaplasma marginale str. Virginia] gi|56388383|gb|AAV86970.1| cell division protein [Anaplasma marginale str. St. Maries] gi|222419654|gb|ACM49677.1| cell division protein (ftsH) [Anaplasma marginale str. Florida] Length = 610 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L++R + Q+L + PK LL+GP G GKT ++R +A A PF + + F E+ Sbjct: 177 LKHRQKFQKLGGKI-----PKGCLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVD 108 +VG + +RD+ + Sbjct: 231 FVGVGASR-VRDMFE 244 >gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum] Length = 729 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ VG+ + +RDL + A Sbjct: 281 LPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEV-LVGQGARR-VRDLFERA 337 >gi|319957420|ref|YP_004168683.1| membrane protease ftsh catalytic subunit [Nitratifractor salsuginis DSM 16511] gi|319419824|gb|ADV46934.1| membrane protease FtsH catalytic subunit [Nitratifractor salsuginis DSM 16511] Length = 696 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 215 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSSFIEM-FVGVGASR-VRDLFEQA 271 >gi|332975520|gb|EGK12410.1| ATP-dependent Clp protease [Desmospora sp. 8437] Length = 722 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 9/68 (13%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67 +++ L+R +IGQ +A R VA A+R NR A LR P + L VGPTGVGKT Sbjct: 422 KDLPDRLNRQVIGQAEAVRKVAKAIRRNR-------AGLRKGTRPIGSFLFVGPTGVGKT 474 Query: 68 AISRRLAR 75 +++ LAR Sbjct: 475 ELAKTLAR 482 >gi|308481279|ref|XP_003102845.1| hypothetical protein CRE_29903 [Caenorhabditis remanei] gi|308260931|gb|EFP04884.1| hypothetical protein CRE_29903 [Caenorhabditis remanei] Length = 352 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 P+ ILL GP G GKT +++ +AR AG FI ++V+ T+ Y Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 158 >gi|293364098|ref|ZP_06610834.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2] gi|292552588|gb|EFF41362.1| ATP-dependent metallopeptidase HflB [Mycoplasma alligatoris A21JP2] Length = 675 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRDLVD 108 MPK ILL GP G GKT +++ A A PF + + F E+ YVG + V Q+I + Sbjct: 230 MPKGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRVRQVINEARK 288 Query: 109 VAINIV 114 A +I+ Sbjct: 289 NAPSII 294 >gi|224083241|ref|XP_002306970.1| predicted protein [Populus trichocarpa] gi|222856419|gb|EEE93966.1| predicted protein [Populus trichocarpa] Length = 641 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVG G GKT ++R +A AG PF ++F E+ +VG + +RDL + A Sbjct: 241 IPKGCLLVGSPGTGKTLLARAVAGEAGVPFFSCAASEFVEM-FVGVGASR-VRDLFEKA 297 >gi|157164271|ref|YP_001466756.1| M41 family peptidase [Campylobacter concisus 13826] gi|157101415|gb|EAT97495.2| putative Cell division protease FtsH homolog [Campylobacter concisus 13826] Length = 558 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MPK +L++GP GVGKT +++ +A A PF F +I YVG +++ Sbjct: 192 MPKGVLMIGPPGVGKTLVAKAVAGEANVPFFYQNGASFVQI-YVGMGAKRV 241 >gi|148708698|gb|EDL40645.1| fidgetin-like 1, isoform CRA_b [Mus musculus] Length = 686 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 446 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 501 >gi|89275983|gb|ABD66350.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275985|gb|ABD66351.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275987|gb|ABD66352.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275989|gb|ABD66353.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275991|gb|ABD66354.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275993|gb|ABD66355.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275995|gb|ABD66356.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275997|gb|ABD66357.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89275999|gb|ABD66358.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276001|gb|ABD66359.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276003|gb|ABD66360.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276005|gb|ABD66361.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276007|gb|ABD66362.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276009|gb|ABD66363.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276011|gb|ABD66364.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276013|gb|ABD66365.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276015|gb|ABD66366.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276017|gb|ABD66367.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276019|gb|ABD66368.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|89276021|gb|ABD66369.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368130|gb|ACF57957.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368132|gb|ACF57958.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368134|gb|ACF57959.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368136|gb|ACF57960.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368138|gb|ACF57961.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368140|gb|ACF57962.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368142|gb|ACF57963.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368146|gb|ACF57965.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368148|gb|ACF57966.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368150|gb|ACF57967.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368152|gb|ACF57968.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368154|gb|ACF57969.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368156|gb|ACF57970.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368158|gb|ACF57971.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|194368160|gb|ACF57972.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 150 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 22 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 81 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 82 DTTNILFICGGAF 94 >gi|51894333|ref|YP_077024.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81387870|sp|Q67JH0|FTSH3_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|51858022|dbj|BAD42180.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 626 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 245 >gi|317120983|ref|YP_004100986.1| membrane protease FtsH catalytic subunit [Thermaerobacter marianensis DSM 12885] gi|315590963|gb|ADU50259.1| membrane protease FtsH catalytic subunit [Thermaerobacter marianensis DSM 12885] Length = 615 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGVLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|308451925|ref|XP_003088853.1| hypothetical protein CRE_14423 [Caenorhabditis remanei] gi|308245130|gb|EFO89082.1| hypothetical protein CRE_14423 [Caenorhabditis remanei] Length = 364 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 P+ ILL GP G GKT +++ +AR AG FI ++V+ T+ Y Sbjct: 117 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 158 >gi|295109828|emb|CBL23781.1| ATP-dependent metalloprotease FtsH [Ruminococcus obeum A2-162] Length = 536 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 117 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 173 >gi|31560300|ref|NP_068691.2| fidgetin-like protein 1 [Mus musculus] gi|254039741|ref|NP_001156831.1| fidgetin-like protein 1 [Mus musculus] gi|254039743|ref|NP_001156832.1| fidgetin-like protein 1 [Mus musculus] gi|81913480|sp|Q8BPY9|FIGL1_MOUSE RecName: Full=Fidgetin-like protein 1 gi|26342268|dbj|BAC34796.1| unnamed protein product [Mus musculus] gi|30354687|gb|AAH51942.1| Fidgetin-like 1 [Mus musculus] gi|30851350|gb|AAH52415.1| Fidgetin-like 1 [Mus musculus] gi|56205315|emb|CAI25376.1| fidgetin-like 1 [Mus musculus] gi|74180683|dbj|BAE25569.1| unnamed protein product [Mus musculus] gi|148708699|gb|EDL40646.1| fidgetin-like 1, isoform CRA_c [Mus musculus] Length = 683 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498 >gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] Length = 638 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|119222265|gb|ABL62330.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 164 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 34 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 93 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 94 DTTNILFICGGAF 106 >gi|10442029|gb|AAG17290.1|AF263914_1 fidgetin-like 1 [Mus musculus] Length = 683 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498 >gi|66805379|ref|XP_636422.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4] gi|464860|sp|P34123|PRS6B_DICDI RecName: Full=26S protease regulatory subunit 6B homolog; AltName: Full=Tat-binding protein homolog 2 gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein [Dictyostelium discoideum] gi|60464797|gb|EAL62917.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4] Length = 403 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P E S++ I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT Sbjct: 145 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 199 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 200 LAKAVAHHTSAAFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 239 >gi|301059773|ref|ZP_07200667.1| Cell division protease FtsH [delta proteobacterium NaphS2] gi|300446099|gb|EFK09970.1| Cell division protease FtsH [delta proteobacterium NaphS2] Length = 605 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVG G GKT ++R +A +AG PF + + F E+ +VG + +RDL + Sbjct: 192 IPKGVLLVGAPGTGKTLLARAIAGVAGVPFFTLSGSDFVEM-FVGVGASR-VRDLFN 246 >gi|300916540|ref|ZP_07133270.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1] gi|300416164|gb|EFJ99474.1| ATP-dependent metallopeptidase HflB [Escherichia coli MS 115-1] Length = 416 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|256005875|ref|ZP_05430822.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360] gi|255990144|gb|EEU00279.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360] gi|316940931|gb|ADU74965.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313] Length = 803 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%) Query: 16 LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 L + +IGQ +A ++VA A+R NR AD + P + + VGPTGVGKT + + LA Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536 Query: 75 -RLAGA--PFIKVEVTKFTE-----------IGYVG 96 L G+ I+++++++ E GYVG Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572 >gi|260950831|ref|XP_002619712.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238847284|gb|EEQ36748.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 677 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++I Sbjct: 244 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRI 293 >gi|114797928|ref|YP_759752.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas neptunium ATCC 15444] gi|114738102|gb|ABI76227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas neptunium ATCC 15444] Length = 771 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 18/107 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ +A A+A +++ A LR+ P + L GPTGVGKT ++++ Sbjct: 459 ADLKRVVFGQDEAIEALAASIK------LARAGLREPNKPIGSYLFTGPTGVGKTEVAKQ 512 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 LA + G ++ +++++ E GYVG + ++ D VD Sbjct: 513 LASIMGVEMLRFDMSEYMERHTVSRLIGAPPGYVGYDEGGLLTDGVD 559 >gi|26353602|dbj|BAC40431.1| unnamed protein product [Mus musculus] Length = 683 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 443 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 498 >gi|56698001|ref|YP_168372.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria pomeroyi DSS-3] gi|56679738|gb|AAV96404.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Ruegeria pomeroyi DSS-3] Length = 775 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 462 KDLEASLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 515 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 516 VAKQLAETLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 572 >gi|125972833|ref|YP_001036743.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405] gi|125713058|gb|ABN51550.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405] Length = 803 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%) Query: 16 LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 L + +IGQ +A ++VA A+R NR AD + P + + VGPTGVGKT + + LA Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536 Query: 75 -RLAGA--PFIKVEVTKFTE-----------IGYVG 96 L G+ I+++++++ E GYVG Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572 >gi|326570972|gb|EGE20996.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis BC7] Length = 766 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|326562899|gb|EGE13186.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis 46P47B1] gi|326565260|gb|EGE15445.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis 12P80B1] Length = 766 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|225873635|ref|YP_002755094.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC 51196] gi|310943113|sp|C1F8X6|FTSH_ACIC5 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|225793772|gb|ACO33862.1| ATP-dependent metalloprotease FtsH [Acidobacterium capsulatum ATCC 51196] Length = 639 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242 >gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni] gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni] Length = 753 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 349 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 405 >gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis] gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis] Length = 749 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 346 LPKGVLLVGPPGTGKTLLARAVAGEASVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 402 >gi|167766201|ref|ZP_02438254.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1] gi|167712281|gb|EDS22860.1| hypothetical protein CLOSS21_00695 [Clostridium sp. SS2/1] Length = 679 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + L + R ++ A L PK LLVGP G GKT +++ +A Sbjct: 176 VAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 230 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RDL A Sbjct: 231 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 262 >gi|50084542|ref|YP_046052.1| ATP-binding protease component [Acinetobacter sp. ADP1] gi|49530518|emb|CAG68230.1| ATP-binding protease component [Acinetobacter sp. ADP1] Length = 758 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 +L R + GQ +A A+A A++ R L A + N + GPTGVGKT ++++LA Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGNFVFAGPTGVGKTEVTKQLA 508 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 +L G ++ +++++ E V R Sbjct: 509 KLLGVELVRFDMSEYMERHAVSR 531 >gi|326575833|gb|EGE25756.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis CO72] Length = 766 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|326570235|gb|EGE20280.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis BC8] Length = 766 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|225405623|ref|ZP_03760812.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme DSM 15981] gi|225042855|gb|EEG53101.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme DSM 15981] Length = 613 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 206 LPKGALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 262 >gi|281417032|ref|ZP_06248052.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20] gi|281408434|gb|EFB38692.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20] Length = 803 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 22/96 (22%) Query: 16 LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 L + +IGQ +A ++VA A+R NR AD + P + + VGPTGVGKT + + LA Sbjct: 484 LHKRVIGQHEAVKSVARAIRRNR-------ADFKKRKKPASFIFVGPTGVGKTELVKALA 536 Query: 75 -RLAGA--PFIKVEVTKFTE-----------IGYVG 96 L G+ I+++++++ E GYVG Sbjct: 537 VELFGSEEALIRLDMSEYMEKHTVSKLIGAPPGYVG 572 >gi|119222255|gb|ABL62325.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222257|gb|ABL62326.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222259|gb|ABL62327.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222261|gb|ABL62328.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222263|gb|ABL62329.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222267|gb|ABL62331.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222269|gb|ABL62332.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222271|gb|ABL62333.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222273|gb|ABL62334.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222275|gb|ABL62335.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222277|gb|ABL62336.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222279|gb|ABL62337.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222281|gb|ABL62338.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222283|gb|ABL62339.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222285|gb|ABL62340.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] gi|119222287|gb|ABL62341.1| ATP-dependent Clp protease ATP-binding subunit [Myxococcus xanthus] Length = 164 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 13/73 (17%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGS--SVSTKYG---------SI 291 GIV++DE DKI + I VS EGVQ+ LL L+EG+ +V K G + Sbjct: 34 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKLIEGTVANVPPKGGRKHPQQEFLQV 93 Query: 292 NTDHILFIASGAF 304 +T +ILFI GAF Sbjct: 94 DTTNILFICGGAF 106 >gi|326576915|gb|EGE26821.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis O35E] Length = 766 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|224535858|ref|ZP_03676397.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus DSM 14838] gi|224522581|gb|EEF91686.1| hypothetical protein BACCELL_00722 [Bacteroides cellulosilyticus DSM 14838] Length = 742 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 454 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 508 ISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554 >gi|83859795|ref|ZP_00953315.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633] gi|83852154|gb|EAP90008.1| FtsH, cell division protein FtsH [Oceanicaulis alexandrii HTCC2633] Length = 643 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLVGPPGTGKTLTARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|326563660|gb|EGE13912.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis 103P14B1] gi|326573268|gb|EGE23236.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis 101P30B1] Length = 766 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|296128488|ref|YP_003635738.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM 20109] gi|296020303|gb|ADG73539.1| ATP-dependent metalloprotease FtsH [Cellulomonas flavigena DSM 20109] Length = 682 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 203 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 259 >gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC 29799] gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC 29799] Length = 625 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL Sbjct: 215 LPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM-FVGMGAAK-VRDL 267 >gi|120556298|ref|YP_960649.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8] gi|120326147|gb|ABM20462.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei VT8] Length = 624 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|322436274|ref|YP_004218486.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9] gi|321164001|gb|ADW69706.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX9] Length = 639 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242 >gi|296113265|ref|YP_003627203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis RH4] gi|295920959|gb|ADG61310.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis RH4] Length = 766 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|295111163|emb|CBL27913.1| ATP-dependent metalloprotease FtsH [Synergistetes bacterium SGP1] Length = 633 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + + F E+ +VG + +RD+ + A Sbjct: 207 LPKGVLLVGPPGTGKTMLAKATAGEAGVPFFFITGSSFVEM-FVGVGAAR-VRDMFEQA 263 >gi|325679414|ref|ZP_08158999.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8] gi|324109011|gb|EGC03242.1| ATP-dependent metallopeptidase HflB [Ruminococcus albus 8] Length = 654 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 204 IPKGVLLLGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 260 >gi|283781331|ref|YP_003372086.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] gi|310946755|sp|D2QZ34|FTSH_PIRSD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|283439784|gb|ADB18226.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] Length = 700 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 254 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDMFQQA 310 >gi|253578998|ref|ZP_04856269.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849941|gb|EES77900.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 643 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 201 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 257 >gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi] gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi] Length = 754 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 351 LPKGVLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 407 >gi|194246667|ref|YP_002004306.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] gi|310943097|sp|B3QZS3|FTSH2_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|193807024|emb|CAP18460.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] Length = 686 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N ++ + + A + PK +LL GP GVGKT +++ +A A PF V + F E+ Sbjct: 251 LKNPFKYEAMGARI-----PKGVLLYGPPGVGKTLLAKAVAGEAKVPFFAVSGSDFIEV- 304 Query: 94 YVGRNVEQIIRDLVDVA 110 YVG + IR L + A Sbjct: 305 YVGLGASR-IRKLFNEA 320 >gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002] gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002] Length = 637 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL+GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 212 IPRGMLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDL 264 >gi|32822914|gb|AAH55215.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Danio rerio] Length = 418 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + S++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|326560255|gb|EGE10643.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis 7169] gi|326566427|gb|EGE16577.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis BC1] Length = 766 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI-----------GYVG 96 + L GPTGVGKT ISR+LA L G P ++ +++++ E GYVG Sbjct: 497 SFLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVG 549 >gi|293606967|ref|ZP_06689313.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC 43553] gi|292814633|gb|EFF73768.1| ATP-dependent metalloprotease FtsH [Achromobacter piechaudii ATCC 43553] Length = 513 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 93 IPKGVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 149 >gi|301098998|ref|XP_002898591.1| cell division protease ftsH [Phytophthora infestans T30-4] gi|262105016|gb|EEY63068.1| cell division protease ftsH [Phytophthora infestans T30-4] Length = 435 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP+G GKT ++R +A AG F+ + F E+ VGR + +RDL A Sbjct: 205 VPKGVLLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEM-LVGRGAAR-VRDLFTQA 261 >gi|302537185|ref|ZP_07289527.1| cell division protein [Streptomyces sp. C] gi|302446080|gb|EFL17896.1| cell division protein [Streptomyces sp. C] Length = 640 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 232 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKV 291 Query: 110 AINIV 114 A IV Sbjct: 292 APAIV 296 >gi|189230104|ref|NP_001121376.1| hypothetical protein LOC100158464 [Xenopus (Silurana) tropicalis] gi|157422738|gb|AAI53480.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Danio rerio] gi|183985575|gb|AAI66067.1| LOC100158464 protein [Xenopus (Silurana) tropicalis] Length = 418 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + S++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|149198608|ref|ZP_01875652.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155] gi|149138323|gb|EDM26732.1| probable ATP-dependent protease [Lentisphaera araneosa HTCC2155] Length = 754 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 7/87 (8%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + +L + + GQ A AV A++ + L DE P + L GPTGVGKT ++ Sbjct: 458 LADDLKKLVYGQDKAVEAVVKAVKTAR------SGLGDEDKPYGSFLFTGPTGVGKTELA 511 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++L+ L G F++ ++++++E + R Sbjct: 512 KQLSSLLGVKFLRFDMSEYSEKHSISR 538 >gi|126696787|ref|YP_001091673.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301] gi|126543830|gb|ABO18072.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9301] Length = 620 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|134287770|ref|YP_001109936.1| FtsH-2 peptidase [Burkholderia vietnamiensis G4] gi|134132420|gb|ABO60155.1| membrane protease FtsH catalytic subunit [Burkholderia vietnamiensis G4] Length = 633 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 196 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252 >gi|328873251|gb|EGG21618.1| 26S protease regulatory subunit 6B [Dictyostelium fasciculatum] Length = 411 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P E S++ I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT Sbjct: 152 PTEGYSDIGGSDIQKQEMREAVELPLTHHNLYKQIGID-----PPRGVLLYGPPGTGKTM 206 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 LAKAVAHHTSASFIRVVGSEFVQ-KYLGEG-PRLVRDVFRLA 246 >gi|254510894|ref|ZP_05122961.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacteraceae bacterium KLH11] gi|221534605|gb|EEE37593.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacteraceae bacterium KLH11] Length = 767 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ +A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 454 KDLEASLKRVVFGQDEAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 508 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 564 >gi|237820651|ref|NP_956044.2| proteasome 26S subunit, ATPase, 4 [Danio rerio] gi|169146760|emb|CAQ15368.1| novel protein (zgc:63709) [Danio rerio] Length = 418 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + S++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] Length = 639 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242 >gi|78779742|ref|YP_397854.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9312] gi|78713241|gb|ABB50418.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. MIT 9312] Length = 620 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|56118688|ref|NP_001008010.1| proteasome 26S ATPase subunit 4 isoform 1 [Xenopus (Silurana) tropicalis] gi|51703677|gb|AAH80888.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Xenopus (Silurana) tropicalis] gi|89268750|emb|CAJ83257.1| Psmc4 [Xenopus (Silurana) tropicalis] Length = 420 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + S++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 154 MMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 208 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 209 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256 >gi|33861820|ref|NP_893381.1| cell division protein FtsH3 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640188|emb|CAE19723.1| cell division protein FtsH3 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 620 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|320583004|gb|EFW97220.1| subunit of the mitochondrial inner membrane i-AAA protease complex, putative [Pichia angusta DL-1] Length = 668 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG ++ +R+L A Sbjct: 234 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKR-VRELFSKA 290 >gi|296161227|ref|ZP_06844036.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] gi|295888568|gb|EFG68377.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] Length = 634 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 196 VPKGVLLVGPPGTGKTLLARAVAGEAGVAFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 252 >gi|292491672|ref|YP_003527111.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] gi|291580267|gb|ADE14724.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] Length = 641 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILL+GP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 216 IPKGILLMGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 272 >gi|72382669|ref|YP_292024.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL2A] gi|72002519|gb|AAZ58321.1| membrane protease FtsH catalytic subunit [Prochlorococcus marinus str. NATL2A] Length = 624 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|296533023|ref|ZP_06895671.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas cervicalis ATCC 49957] gi|296266652|gb|EFH12629.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseomonas cervicalis ATCC 49957] Length = 790 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A++ A++ A LRD P N L GPTGVGKT Sbjct: 465 RNLERDLKAMVFGQDQAIDALSAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 518 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA+ G I+ +++++ E GYVG + ++ D +D Sbjct: 519 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDSID 569 >gi|291546276|emb|CBL19384.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5] Length = 621 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 202 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 258 >gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 502 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 8/89 (8%) Query: 22 GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 +Q+ K VA LRN + L L PK +LLVGP G GKT ++R +A A PF Sbjct: 80 AKQELKEIVAF-LRNPEKFSILGGKL-----PKGVLLVGPPGTGKTLLARAVAGEAKVPF 133 Query: 82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +F E+ VG+ + +RDL A Sbjct: 134 FHAAGPEFDEV-LVGQGARR-VRDLFKAA 160 >gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia] Length = 648 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R LA AG F ++F E+ +VG + +RD+ A Sbjct: 250 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVGVGASR-VRDIFKAA 306 >gi|123968995|ref|YP_001009853.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601] gi|123199105|gb|ABM70746.1| cell division protein FtsH3 [Prochlorococcus marinus str. AS9601] Length = 620 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|123966658|ref|YP_001011739.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515] gi|123201024|gb|ABM72632.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9515] Length = 620 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|94676658|ref|YP_589061.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219808|gb|ABF13967.1| ATP-dependent metalloprotease FtsH [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 627 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 170 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 223 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ D A Sbjct: 224 FVGVGASR-VRDMFDQA 239 >gi|268537162|ref|XP_002633717.1| Hypothetical protein CBG03401 [Caenorhabditis briggsae] gi|187036624|emb|CAP24301.1| hypothetical protein CBG_03401 [Caenorhabditis briggsae AF16] Length = 341 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 P+ ILL GP G GKT +++ +AR AG FI ++V+ T+ Y Sbjct: 116 PRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSILTDKWY 157 >gi|32490980|ref|NP_871234.1| hypothetical protein WGLp231 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166186|dbj|BAC24377.1| hflB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 638 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 243 >gi|189463817|ref|ZP_03012602.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM 17393] gi|189438767|gb|EDV07752.1| hypothetical protein BACINT_00150 [Bacteroides intestinalis DSM 17393] Length = 742 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 454 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 508 ISLQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554 >gi|124026388|ref|YP_001015503.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A] gi|123961456|gb|ABM76239.1| cell division protein FtsH3 [Prochlorococcus marinus str. NATL1A] Length = 635 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 213 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 269 >gi|303228848|ref|ZP_07315661.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a] gi|302516468|gb|EFL58397.1| Cell division protease FtsH [Veillonella atypica ACS-134-V-Col7a] Length = 636 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFGQA 242 >gi|229829568|ref|ZP_04455637.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM 14600] gi|229791557|gb|EEP27671.1| hypothetical protein GCWU000342_01665 [Shuttleworthia satelles DSM 14600] Length = 773 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 195 VAGQDEAKESLVEVVDFLHNPRKYIEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 249 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RDL A Sbjct: 250 AGVPFFSLAGSDFVEM-FVGVGASR-VRDLFKEA 281 >gi|198427611|ref|XP_002131406.1| PREDICTED: similar to fidgetin-like 1 [Ciona intestinalis] Length = 597 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T ++G+ E+++R L VA Sbjct: 356 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWIGQG-EKMVRALFAVA 411 >gi|197294456|ref|YP_001798997.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] gi|171853783|emb|CAM11716.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] Length = 708 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 49 DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107 D++ PK LL GP G GKT + + L+ A FI+ E +K + YVG VE+ + + Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAHFIEFEPSKLDKT-YVGEGVEEWEKIWME 368 Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140 D I + E +R D+ + SIN IL L G Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410 >gi|152997266|ref|YP_001342101.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas sp. MWYL1] gi|150838190|gb|ABR72166.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas sp. MWYL1] Length = 751 Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 11/97 (11%) Query: 6 NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60 N R+++S L+R + GQ +A A++ A++ A L+ E P + L+ G Sbjct: 440 NSDDRQVLSNLERNLKMVVFGQDNAIDALSAAIKLSR------AGLKAEQKPIGSFLMAG 493 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 PTGVGKT ++++LA+ G I+ +++++ E V R Sbjct: 494 PTGVGKTEVTKQLAKQLGLELIRFDMSEYMERHAVSR 530 >gi|224003627|ref|XP_002291485.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335] gi|220973261|gb|EED91592.1| chloroplast ftsH [Thalassiosira pseudonana CCMP1335] Length = 578 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MK +FNF P ++ D + G AK +A + + +Q +P LL G Sbjct: 112 MKPSFNFHPTTNITFED--VAGCDGAKLELAEIVD--FLKQPQAYTNNGCRIPAGALLYG 167 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P G GKT +++ +A AG PF+ + ++F E+ YVG ++ Sbjct: 168 PPGTGKTLLAKAVAGEAGVPFVSMSGSEFVEL-YVGVGASRV 208 >gi|213409774|ref|XP_002175657.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] gi|212003704|gb|EEB09364.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] Length = 629 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G +DAK ++ A+ + R +L LR+ + + +LL GP G GKT +++ +A A A Sbjct: 351 IAGLEDAKNSLKEAVIYPFLRPELFCGLREPV--QGMLLFGPPGTGKTMLAKAVATEAKA 408 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T Y+G + E+++R L VA Sbjct: 409 TFFSISASSLTS-KYLGES-EKLVRALFTVA 437 >gi|213409103|ref|XP_002175322.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces japonicus yFS275] gi|212003369|gb|EEB09029.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces japonicus yFS275] Length = 350 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104 PK +LL GP G GKT +++ LA+ +GA FI V V T+ G + VE + R Sbjct: 127 PKGLLLYGPPGCGKTMLAKALAKQSGATFINVNVGLLTDKWFGESNKLVEALFR 180 >gi|156045467|ref|XP_001589289.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980] gi|154694317|gb|EDN94055.1| hypothetical protein SS1G_09923 [Sclerotinia sclerotiorum 1980 UF-70] Length = 399 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N +++R + +A Sbjct: 132 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN--KLVRAVFSLA 187 >gi|317499321|ref|ZP_07957593.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] gi|316893412|gb|EFV15622.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] Length = 672 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + L + R ++ A L PK LLVGP G GKT +++ +A Sbjct: 176 VAGQGEAKETLTEMVDFLHHPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 230 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RDL A Sbjct: 231 AGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 262 >gi|254527134|ref|ZP_05139186.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538558|gb|EEE41011.1| ATP-dependent metallopeptidase HflB subfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 620 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|118411032|ref|YP_874427.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum] gi|116739779|gb|ABK20650.1| cell division protein FtsH-like protein [Phaeodactylum tricornutum] Length = 624 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V ++F E+ ++G + IRDL A Sbjct: 212 IPKGVLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEM-FIGIGASR-IRDLFKKA 268 >gi|158319193|ref|YP_001511700.1| ATPase [Alkaliphilus oremlandii OhILAs] gi|158139392|gb|ABW17704.1| ATPase AAA-2 domain protein [Alkaliphilus oremlandii OhILAs] Length = 758 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 11/81 (13%) Query: 15 ELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 +L R ++GQ+DA R+++ +R NR + R + P + + VGPTGVGKT + R L Sbjct: 465 QLHRRVVGQKDAVRSLSRTIRRNR-------SGFRKKRKPASFIFVGPTGVGKTELVRAL 517 Query: 74 A-RLAGA--PFIKVEVTKFTE 91 A L G+ I+V+++++ E Sbjct: 518 AEELFGSEEAMIRVDMSEYME 538 >gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211] gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211] Length = 577 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK LL+GP G GKT ++R +A A PF + ++F E +G V Q+ + ++ Sbjct: 155 IPKGFLLIGPPGTGKTLLARAIAGEANVPFFSISASEFVELFVGVGASRVRQLFKKALEK 214 Query: 110 AINIV 114 + +I+ Sbjct: 215 SPSII 219 >gi|310792034|gb|EFQ27561.1| ATPase [Glomerella graminicola M1.001] Length = 425 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +AR +GA FI + ++ TE Y N +++R + +A Sbjct: 168 PSGVLLYGPPGCGKTMLAKAVARESGASFINLHISTVTEKWYGDSN--KLVRAVFSLA 223 >gi|301109904|ref|XP_002904032.1| fidgetin-like protein [Phytophthora infestans T30-4] gi|262096158|gb|EEY54210.1| fidgetin-like protein [Phytophthora infestans T30-4] Length = 576 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G Q AK+ V + R + LR +PK +LL GP G GKT I + +A +GA Sbjct: 300 IAGLQFAKKCVNELVIWPMARPDIFTGLRS--LPKGLLLFGPPGTGKTLIGKAIASQSGA 357 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T ++G+ E+++R L VA Sbjct: 358 TFFSISASSLTS-KWIGQG-EKLVRTLFAVA 386 >gi|152990623|ref|YP_001356345.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor sp. SB155-2] gi|151422484|dbj|BAF69988.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Nitratiruptor sp. SB155-2] Length = 862 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 12/90 (13%) Query: 15 ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 EL +Y++GQ A +AVA A+ RN+ A L D P + + +GPTGVGKT ++ Sbjct: 568 ELKKYVVGQDAAIKAVARAIKRNK-------AGLSDTNRPIGSFMFLGPTGVGKTETAKT 620 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGRNV 99 LAR I+++++++ E V R V Sbjct: 621 LARFLFDTEKSLIRIDMSEYMEKHAVSRLV 650 >gi|154484306|ref|ZP_02026754.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC 27560] gi|149734783|gb|EDM50700.1| hypothetical protein EUBVEN_02019 [Eubacterium ventriosum ATCC 27560] Length = 657 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK +V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 187 VAGQEEAKESVVELVDFLHNPGKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 242 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 273 >gi|84994156|ref|XP_951800.1| 26S protease subunit [Theileria annulata strain Ankara] gi|65301961|emb|CAI74068.1| 26S protease subunit, putative [Theileria annulata] Length = 634 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I+G D K+ V + N L L PK ILL GP G GKT I++ +A ++ A Sbjct: 350 IVGLDDVKKVVIDKIVNPILMPNLHIGLFK--APKGILLFGPPGTGKTTIAKWIANVSNA 407 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 F ++ + T Y G + E II+ L VA+ Sbjct: 408 TFFEISPSSITSKFY-GES-ESIIKTLFKVAL 437 >gi|33865834|ref|NP_897393.1| FtsH ATP-dependent protease-like protein [Synechococcus sp. WH 8102] gi|33633004|emb|CAE07815.1| FtsH ATP-dependent protease homolog [Synechococcus sp. WH 8102] Length = 637 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 213 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 265 >gi|148260430|ref|YP_001234557.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5] gi|326403623|ref|YP_004283705.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] gi|146402111|gb|ABQ30638.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum JF-5] gi|325050485|dbj|BAJ80823.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] Length = 633 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 191 VPKGILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 247 >gi|157413822|ref|YP_001484688.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215] gi|157388397|gb|ABV51102.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9215] Length = 620 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|149248642|ref|XP_001528708.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL YB-4239] gi|146448662|gb|EDK43050.1| hypothetical protein LELG_01228 [Lodderomyces elongisporus NRRL YB-4239] Length = 1011 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK+ VA L++ + ++L A + P+ +L GP G GKT ++R A Sbjct: 543 VAGMEEAKQEVAEFVSFLKDPEKYEKLGAKI-----PRGAILSGPPGTGKTLLARATAGE 597 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL A Sbjct: 598 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 629 >gi|153953240|ref|YP_001394005.1| FtsH2 [Clostridium kluyveri DSM 555] gi|146346121|gb|EDK32657.1| FtsH2 [Clostridium kluyveri DSM 555] Length = 609 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 222 AKVPFFSISGSAFVEM-FVGMGAAR-VRDLFQQA 253 >gi|58865396|ref|NP_001011913.1| fidgetin-like protein 1 [Rattus norvegicus] gi|81911001|sp|Q6GX84|FIGL1_RAT RecName: Full=Fidgetin-like protein 1 gi|48686585|gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus] gi|48686587|gb|AAT46049.1| fidgetin-like 1 [Rattus norvegicus] gi|149016958|gb|EDL76063.1| rCG24478 [Rattus norvegicus] Length = 677 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492 >gi|291542951|emb|CBL16061.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus bromii L2-63] Length = 780 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 20/97 (20%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL 73 +EL + IIGQ +A +A+A A+R R R Q P P + + VGPTGVGKT + + L Sbjct: 485 NELKKKIIGQDEAVKALASAIR-RSRVQISP-----RRRPASFIFVGPTGVGKTELVKVL 538 Query: 74 AR-LAGAP--FIKVEVTKFTE-----------IGYVG 96 ++ L P I++++++F E GYVG Sbjct: 539 SKELFDTPETLIRLDMSEFMEKHSVSKIIGSPPGYVG 575 >gi|260436025|ref|ZP_05789995.1| putative Cell division protease FtsH family protein [Synechococcus sp. WH 8109] gi|260413899|gb|EEX07195.1| putative Cell division protease FtsH family protein [Synechococcus sp. WH 8109] Length = 639 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 215 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267 >gi|160893082|ref|ZP_02073870.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50] gi|156865165|gb|EDO58596.1| hypothetical protein CLOL250_00627 [Clostridium sp. L2-50] Length = 624 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK LLVGP G GKT +++ +A A PF + + F E+ YVG + +RDL A Sbjct: 213 LPKGALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFVEM-YVGVGASR-VRDLFKQAT 270 Query: 112 NIV 114 + Sbjct: 271 QMA 273 >gi|77464984|ref|YP_354488.1| chaperone ClpB [Rhodobacter sphaeroides 2.4.1] gi|77389402|gb|ABA80587.1| Chaperone ClpB [Rhodobacter sphaeroides 2.4.1] Length = 870 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ+ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642 >gi|87122217|ref|ZP_01078100.1| ATP-binding protease component ClpA [Marinomonas sp. MED121] gi|86162537|gb|EAQ63819.1| ATP-binding protease component ClpA [Marinomonas sp. MED121] Length = 750 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 11/99 (11%) Query: 4 TFNFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58 + N R+++ L+R + GQ A ++A A++ R L AD + P + L+ Sbjct: 438 SVNTDDRKVLENLERNLKMVVFGQDQAIESLADAIK--LSRAGLKADQK----PIGSFLM 491 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GPTGVGKT ++R+LA+ G I+ +++++ E V R Sbjct: 492 AGPTGVGKTEVTRQLAKQLGVELIRFDMSEYMERHAVSR 530 >gi|312880490|ref|ZP_07740290.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans DSM 12260] gi|310783781|gb|EFQ24179.1| membrane protease FtsH catalytic subunit [Aminomonas paucivorans DSM 12260] Length = 624 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 PK +LL GP G GKT ++R +A AG PF + + F E+ YVG ++ Sbjct: 215 PKGVLLFGPPGTGKTLLARAVAGEAGVPFFRAAGSDFVEM-YVGVGASRV 263 >gi|303230955|ref|ZP_07317698.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6] gi|302514337|gb|EFL56336.1| Cell division protease FtsH [Veillonella atypica ACS-049-V-Sch6] Length = 636 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFGQA 242 >gi|299830570|ref|YP_003735018.1| cell division protein FtsH-like protein [Durinskia baltica] gi|297384934|gb|ADI40233.1| cell division protein FtsH-like protein [Durinskia baltica] Length = 625 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V ++F E+ ++G + IRDL A Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIANEASVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 270 >gi|297570854|ref|YP_003696628.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum DSM 20595] gi|296931201|gb|ADH92009.1| ATP-dependent metalloprotease FtsH [Arcanobacterium haemolyticum DSM 20595] Length = 747 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 277 IPRGVLLYGPPGTGKTLLAKAVAGEAGVPFFHISASEFVEM-FVGVGASR-VRDL 329 >gi|254574458|ref|XP_002494338.1| hypothetical protein [Pichia pastoris GS115] gi|238034137|emb|CAY72159.1| hypothetical protein PAS_chr4_0889 [Pichia pastoris GS115] gi|328353845|emb|CCA40242.1| Mitochondrial member of the AAA family of ATPases [Pichia pastoris CBS 7435] Length = 686 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R A AG PF + ++F E+ YVG +++ Sbjct: 251 LPKGVLLTGPPGTGKTLLARATAGEAGVPFFFMSGSEFDEL-YVGVGAKRV 300 >gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940] gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940] Length = 750 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|261338170|ref|ZP_05966054.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM 20093] gi|270276807|gb|EFA22661.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM 20093] Length = 691 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ D A Sbjct: 245 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEM-FVGLGASR-VRDVFDEA 301 >gi|198282815|ref|YP_002219136.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666632|ref|YP_002425012.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247336|gb|ACH82929.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518845|gb|ACK79431.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 752 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 R+ + L+R I GQ+ A ++ A++ A LR P + L GPTGV Sbjct: 445 RQALKNLERDLGFVIFGQEKAIHELSAAIKMAR------AGLRHHEKPVGSFLFSGPTGV 498 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GKT +SR+LA L G P ++ +++++ E V R Sbjct: 499 GKTELSRQLASLLGIPLLRFDMSEYMERHTVSR 531 >gi|153813584|ref|ZP_01966252.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174] gi|149830329|gb|EDM85421.1| hypothetical protein RUMOBE_04007 [Ruminococcus obeum ATCC 29174] Length = 630 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 203 MPKGALLVGPPGTGKTLLAKAVAGEAEVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 259 >gi|144898736|emb|CAM75600.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Magnetospirillum gryphiswaldense MSR-1] Length = 764 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68 R + +L + GQ+ A A+A A++ A LR+ P L GPTGVGKT Sbjct: 454 RTLERDLKTLVFGQEKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LAR+ G + +++++ E GYVG + ++ D +D Sbjct: 508 VARQLARIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558 >gi|145351544|ref|XP_001420133.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus lucimarinus CCE9901] gi|144580366|gb|ABO98426.1| AAA-metalloprotease FtsH, chloroplast precursor [Ostreococcus lucimarinus CCE9901] Length = 677 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P ++LVG G GKT ++R +A AG PFI + ++F E+ YVG ++ Sbjct: 222 PSGVMLVGAPGTGKTLLARAVAGEAGVPFISISASEFVEL-YVGMGAARV 270 >gi|78212968|ref|YP_381747.1| FtsH peptidase [Synechococcus sp. CC9605] gi|78197427|gb|ABB35192.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 639 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 215 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEM-FVGVGASR-VRDL 267 >gi|288818844|ref|YP_003433192.1| chaperone protein [Hydrogenobacter thermophilus TK-6] gi|288788244|dbj|BAI69991.1| chaperone protein [Hydrogenobacter thermophilus TK-6] gi|308752431|gb|ADO45914.1| ATPase AAA-2 domain protein [Hydrogenobacter thermophilus TK-6] Length = 984 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 21/97 (21%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +I Q+ A +AVA A+R R R A L+D P L +GPTGVGKT +S+ L Sbjct: 684 ELHRRVIDQEHAVKAVAEAIR-RAR-----AGLKDPKRPIATFLFLGPTGVGKTELSKAL 737 Query: 74 ARLAGA---PFIKVEVTKFTE-----------IGYVG 96 A L I++++++F E GYVG Sbjct: 738 AELLFGDEEALIRLDMSEFKEEHSVAKLIGAPPGYVG 774 >gi|269925293|ref|YP_003321916.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] gi|310946768|sp|D1CDT8|FTSH_THET1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|269788953|gb|ACZ41094.1| ATP-dependent metalloprotease FtsH [Thermobaculum terrenum ATCC BAA-798] Length = 646 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK+ +A L+N + Q+L + PK +LL+GP G GKT ++R +A Sbjct: 199 VAGIEEAKQELAEIVDFLKNPQKYQRLGGTI-----PKGVLLIGPPGTGKTLLARAVAGE 253 Query: 77 AGAPFIKVEVTKFTEI 92 AG PF + ++F E+ Sbjct: 254 AGVPFFSMSGSEFVEM 269 >gi|197294332|ref|YP_001798873.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] gi|171853659|emb|CAM11538.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] Length = 713 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 49 DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107 D++ PK LL GP G GKT + + L+ A FI+ E +K + YVG VE+ + + Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368 Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140 D I + E +R D+ + SIN IL L G Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410 >gi|118411141|ref|YP_874535.1| cell division protein FtsH-like protein [Thalassiosira pseudonana] gi|224015722|ref|XP_002297509.1| plastid division protein [Thalassiosira pseudonana CCMP1335] gi|116739888|gb|ABK20758.1| cell division protein FtsH-like protein [Thalassiosira pseudonana] gi|220967773|gb|EED86149.1| plastid division protein [Thalassiosira pseudonana CCMP1335] Length = 642 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A A PF V ++F E+ ++G + +RDL A Sbjct: 215 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFQKA 271 >gi|126460853|ref|YP_001041967.1| ATPase [Rhodobacter sphaeroides ATCC 17029] gi|126102517|gb|ABN75195.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 870 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ+ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642 >gi|163815350|ref|ZP_02206725.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759] gi|158449324|gb|EDP26319.1| hypothetical protein COPEUT_01514 [Coprococcus eutactus ATCC 27759] Length = 674 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK ++ L N R ++ A L PK LLVGP G GKT +++ +A Sbjct: 232 VAGEDEAKESLTEMVDFLHNPKRYLEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 286 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIV 114 A PF + + F E+ YVG + +RDL A ++ Sbjct: 287 ANVPFFSMSGSSFVEM-YVGVGASR-VRDLFKQAADMA 322 >gi|17232268|ref|NP_488816.1| cell division protein [Nostoc sp. PCC 7120] gi|81769738|sp|Q8YMZ8|FTSH_ANASP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|17133913|dbj|BAB76475.1| cell division protein [Nostoc sp. PCC 7120] Length = 656 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 231 IPKGVLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 287 >gi|221640905|ref|YP_002527167.1| ATPase AAA-2 domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161686|gb|ACM02666.1| ATPase AAA-2 domain protein [Rhodobacter sphaeroides KD131] Length = 870 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ+ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642 >gi|239916685|ref|YP_002956243.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] gi|281414857|ref|ZP_06246599.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] gi|239837892|gb|ACS29689.1| membrane protease FtsH catalytic subunit [Micrococcus luteus NCTC 2665] Length = 696 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254 >gi|91215670|ref|ZP_01252640.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus torquis ATCC 700755] gi|91186136|gb|EAS72509.1| putative transmembrane AAA-metalloprotease FtsH [Psychroflexus torquis ATCC 700755] Length = 699 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 233 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 289 >gi|58039079|ref|YP_191043.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter oxydans 621H] gi|58001493|gb|AAW60387.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter oxydans 621H] Length = 771 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A+A A++ A LRD P N L GPTGVGKT Sbjct: 456 RHLERDLRNMVFGQDKAIDALAAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 509 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G I+ +++++ E GYVG + ++ D +D Sbjct: 510 VAKQLANSLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 560 >gi|332559883|ref|ZP_08414205.1| ATPase [Rhodobacter sphaeroides WS8N] gi|332277595|gb|EGJ22910.1| ATPase [Rhodobacter sphaeroides WS8N] Length = 870 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ+ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGRRVIGQRAALRAVANAVR-RAR-----AGLNDERRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 616 AEYLFDDDQAMVRIDMSEFMEKHSVAR 642 >gi|330850841|ref|YP_004376591.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC DA0580] gi|328835661|dbj|BAK18957.1| cell division protein FtsH-like protein [Fistulifera sp. JPCC DA0580] Length = 626 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V ++F E+ ++G + IRDL A Sbjct: 214 IPKGVLLVGPPGTGKTLLAKAIANEANVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 270 >gi|320159863|ref|YP_004173087.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC [Anaerolinea thermophila UNI-1] gi|319993716|dbj|BAJ62487.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC [Anaerolinea thermophila UNI-1] Length = 839 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++I+GQ +A A+A A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 517 ELRKHIVGQDEAIDAIAKAVR-RAR-----AGLKDPRRPIGSFIFLGPTGVGKTELTKAL 570 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 AR + I++++++F E V R V Sbjct: 571 ARFMFGSEEALIQLDMSEFMERHTVSRLV 599 >gi|75908658|ref|YP_322954.1| FtsH peptidase [Anabaena variabilis ATCC 29413] gi|75702383|gb|ABA22059.1| membrane protease FtsH catalytic subunit [Anabaena variabilis ATCC 29413] Length = 633 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 207 IPKGVLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 263 >gi|312144291|ref|YP_003995737.1| ATP-dependent metalloprotease FtsH [Halanaerobium sp. 'sapolanicus'] gi|311904942|gb|ADQ15383.1| ATP-dependent metalloprotease FtsH [Halanaerobium sp. 'sapolanicus'] Length = 634 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 7/75 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QL A + PK +L++GP G GKT +++ +A AG PF + + F E+ Sbjct: 174 LKNPQKFSQLGATV-----PKGVLMIGPPGTGKTLMAKAVAGEAGTPFYFISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVD 108 +VG + +RDL + Sbjct: 228 FVGVGASR-VRDLFE 241 >gi|289707001|ref|ZP_06503336.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58] gi|289556326|gb|EFD49682.1| ATP-dependent metallopeptidase HflB [Micrococcus luteus SK58] Length = 696 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA 254 >gi|156717542|ref|NP_001096311.1| fidgetin-like protein 1 [Xenopus (Silurana) tropicalis] gi|158513822|sp|A4IHT0|FIGL1_XENTR RecName: Full=Fidgetin-like protein 1 gi|134024394|gb|AAI35672.1| LOC100124890 protein [Xenopus (Silurana) tropicalis] Length = 656 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 416 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFTVA 471 >gi|78184634|ref|YP_377069.1| peptidase M41, FtsH [Synechococcus sp. CC9902] gi|78168928|gb|ABB26025.1| FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 [Synechococcus sp. CC9902] Length = 642 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 218 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 270 >gi|33862651|ref|NP_894211.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313] gi|33634567|emb|CAE20553.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9313] Length = 625 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|303238756|ref|ZP_07325288.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] gi|302593635|gb|EFL63351.1| ATP-dependent metalloprotease FtsH [Acetivibrio cellulolyticus CD2] Length = 617 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +L GP G GKT +++ LA AG PFI V + F E +VG + IR L + A Sbjct: 211 PKGTVLFGPPGTGKTLLAKALAGTAGVPFIAVSGSDFVE-KFVGVGASR-IRQLFEFA 266 >gi|255316594|ref|ZP_05358177.1| ATP-dependent metallopeptidase HflB [Clostridium difficile QCD-76w55] Length = 577 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++PK +L GP G GKT I++ +A AG PF + + F E+ YVG ++ +R+L + A Sbjct: 174 VLPKGAILYGPPGTGKTLIAKAVAGEAGVPFFSINGSDFIEL-YVGLGAKR-VRELFEEA 231 >gi|116070500|ref|ZP_01467769.1| Peptidase M41, FtsH [Synechococcus sp. BL107] gi|116065905|gb|EAU71662.1| Peptidase M41, FtsH [Synechococcus sp. BL107] Length = 642 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 218 IPRGLLLVGPPGTGKTLLAKAIAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 270 >gi|37522218|ref|NP_925595.1| cell division protein FtsH-like protein [Gloeobacter violaceus PCC 7421] gi|35213218|dbj|BAC90590.1| glr2649 [Gloeobacter violaceus PCC 7421] Length = 785 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104 P+ +LLVGP G GKT I+R +A AG PF + F +G + + QI R Sbjct: 108 PRGVLLVGPPGTGKTMIARAIANEAGVPFYSLAAADFANMFLGVGSQRIRQIYR 161 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIR 104 +P+ L VGP G GKT +++ +A AG PF + + FTE +G V Q+ R Sbjct: 368 VPRGFLFVGPPGTGKTLLAKAIANEAGVPFYALSGSDFTEVWVGLGASRVRQVYR 422 >gi|116195888|ref|XP_001223756.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51] gi|88180455|gb|EAQ87923.1| hypothetical protein CHGG_04542 [Chaetomium globosum CBS 148.51] Length = 414 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +AR +GA FI + ++ TE Y N +++R + +A Sbjct: 147 PSGVLLYGPPGCGKTMLAKAVARESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 202 >gi|307945083|ref|ZP_07660419.1| putative ATP-dependent hydrolase protein [Roseibium sp. TrichSKD4] gi|307770956|gb|EFO30181.1| putative ATP-dependent hydrolase protein [Roseibium sp. TrichSKD4] Length = 647 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 38 WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 W+R++L D + +LLVG G GKT +R LA GA F++ ++K +G++G Sbjct: 233 WKRKKLSWGDVD----RGVLLVGKPGTGKTVYARALAETCGAHFVECSLSKMQGLGHLGD 288 Query: 98 NVEQIIR 104 ++ I R Sbjct: 289 MLKGIGR 295 >gi|317056315|ref|YP_004104782.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7] gi|315448584|gb|ADU22148.1| ATP-dependent metalloprotease FtsH [Ruminococcus albus 7] Length = 663 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 204 IPKGVLLLGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 260 >gi|254520640|ref|ZP_05132696.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] gi|226914389|gb|EEH99590.1| ATP-dependent metalloprotease FtsH [Clostridium sp. 7_2_43FAA] Length = 638 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 174 VAGQDEAKESLKEIIDYLNNASKYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF+ + + F E+ + G + +RDL A Sbjct: 229 ANVPFLSISGSNFVEM-FAGMGAAK-VRDLFQEA 260 >gi|195572166|ref|XP_002104067.1| GD20762 [Drosophila simulans] gi|194199994|gb|EDX13570.1| GD20762 [Drosophila simulans] Length = 389 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 143 IQKQEVREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RDL +A Sbjct: 198 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225 >gi|193215173|ref|YP_001996372.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] gi|193088650|gb|ACF13925.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] Length = 640 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL+GP G GKT +++ +A AG PF + F E+ +VG + +RDL + A Sbjct: 226 PKGVLLLGPPGTGKTLLAKAVAGEAGVPFFSMSGADFVEM-FVGVGASR-VRDLFEQA 281 >gi|159903848|ref|YP_001551192.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211] gi|159889024|gb|ABX09238.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9211] Length = 619 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|124023616|ref|YP_001017923.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303] gi|123963902|gb|ABM78658.1| cell division protein FtsH3 [Prochlorococcus marinus str. MIT 9303] Length = 625 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|116495971|ref|YP_807705.1| ATP-dependent Zn protease [Lactobacillus casei ATCC 334] gi|191639450|ref|YP_001988616.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein FtsH) [Lactobacillus casei BL23] gi|239630370|ref|ZP_04673401.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067521|ref|YP_003789544.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang] gi|116106121|gb|ABJ71263.1| membrane protease FtsH catalytic subunit [Lactobacillus casei ATCC 334] gi|190713752|emb|CAQ67758.1| ATP-dependent zinc metalloendopeptidase FtsH (Cell division protein FtsH) [Lactobacillus casei BL23] gi|239526653|gb|EEQ65654.1| ATP-dependent Zn protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439928|gb|ADK19694.1| ATP-dependent Zn protease [Lactobacillus casei str. Zhang] gi|327383542|gb|AEA55018.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei LC2W] gi|327386735|gb|AEA58209.1| ATP-dependent metalloprotease FtsH [Lactobacillus casei BD-II] Length = 715 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277 >gi|90994519|ref|YP_537009.1| cell division protein [Porphyra yezoensis] gi|122225815|sp|Q1XDF9|FTSH_PORYE RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|90819083|dbj|BAE92452.1| unnamed protein product [Porphyra yezoensis] Length = 628 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1] gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1] Length = 372 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IGQ+ AK+ + R ++ + P+NIL GP+G GKT +++ LA Sbjct: 125 VIGQELAKQKCRLIERFLEEPERF-----GKWAPRNILFFGPSGTGKTMLAKALANKTDV 179 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P I V+ T+ IG YVG QI Sbjct: 180 PLIPVKATQL--IGEYVGDGARQI 201 >gi|288800838|ref|ZP_06406295.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str. F0039] gi|288332299|gb|EFC70780.1| cell division protein FtsH [Prevotella sp. oral taxon 299 str. F0039] Length = 671 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ AK+ + L+N R +L + PK LLVGP G GKT +++ +A Sbjct: 191 VAGQAGAKQEIEEIVEFLKNPSRYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 245 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 246 AGVPFFSMSGSDFVEM-FVGVGASR-VRDL 273 >gi|283850915|ref|ZP_06368201.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B] gi|283573838|gb|EFC21812.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B] Length = 605 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK +LL+GP G GKT ++R +A A PF + ++F E+ +VG Sbjct: 188 MPKGVLLIGPPGTGKTLLARAVAGEAQVPFFSISGSEFVEM-FVG 231 >gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008] gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008] Length = 642 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238 >gi|197294360|ref|YP_001798901.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] gi|171853687|emb|CAM11570.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] Length = 713 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 49 DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107 D++ PK LL GP G GKT + + L+ A FI+ E +K + YVG VE+ + + Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368 Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140 D I + E +R D+ + SIN IL L G Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410 >gi|94967095|ref|YP_589143.1| FtsH peptidase [Candidatus Koribacter versatilis Ellin345] gi|94549145|gb|ABF39069.1| membrane protease FtsH catalytic subunit [Candidatus Koribacter versatilis Ellin345] Length = 637 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 187 IPKGVLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|33240430|ref|NP_875372.1| cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237957|gb|AAQ00025.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 584 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK LLVGP G GKT +++ +A A PFI ++F E+ +VG Sbjct: 167 LPKGFLLVGPPGTGKTLLAKAIAGEANVPFISTTASEFVEL-FVG 210 >gi|299830367|ref|YP_003734582.1| cell division protein [Kryptoperidinium foliaceum] gi|297385069|gb|ADI40367.1| cell division protein [Kryptoperidinium foliaceum] Length = 627 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V ++F E+ ++G + IRDL A Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIANEASVPFYSVAGSEFVEM-FIGIGAAR-IRDLFKKA 272 >gi|294672833|ref|YP_003573449.1| ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23] gi|294473889|gb|ADE83278.1| putative ATP-dependent metalloprotease FtsH [Prevotella ruminicola 23] Length = 673 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 217 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDLFQQA 273 >gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] Length = 808 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|329122061|ref|ZP_08250669.1| cell division protein FtsH [Dialister micraerophilus DSM 19965] gi|327466868|gb|EGF12384.1| cell division protein FtsH [Dialister micraerophilus DSM 19965] Length = 613 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK +A LRN R + A + PK +LLVGP G GKT ++R +A Sbjct: 155 VAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVAGE 209 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 210 ARVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|281426190|ref|ZP_06257103.1| cell division protein FtsH [Prevotella oris F0302] gi|281399766|gb|EFB30597.1| cell division protein FtsH [Prevotella oris F0302] Length = 683 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ V L+N + +L + PK LLVGP G GKT +++ +A Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RD+ A Sbjct: 260 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFSQA 291 >gi|227533051|ref|ZP_03963100.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189452|gb|EEI69519.1| M41 family endopeptidase FtsH [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 715 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277 >gi|94496140|ref|ZP_01302718.1| AAA ATPase, central region [Sphingomonas sp. SKA58] gi|94424319|gb|EAT09342.1| AAA ATPase, central region [Sphingomonas sp. SKA58] Length = 859 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 EL + +IGQ DA +AV+ A+R R R A L+D P + L +GPTGVGKT +++ Sbjct: 565 GELGKRVIGQADAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 618 Query: 73 LARLA---GAPFIKVEVTKFTEIGYVGR 97 LA + +++++++F E V R Sbjct: 619 LASFLFDDDSAMVRIDMSEFMEKHSVAR 646 >gi|31742536|ref|NP_071399.2| fidgetin-like protein 1 [Homo sapiens] gi|112789543|ref|NP_001036227.1| fidgetin-like protein 1 [Homo sapiens] gi|158563967|sp|Q6PIW4|FIGL1_HUMAN RecName: Full=Fidgetin-like protein 1 gi|30354010|gb|AAH51867.1| Fidgetin-like 1 [Homo sapiens] gi|41393465|gb|AAS01996.1| unknown [Homo sapiens] gi|51094648|gb|EAL23899.1| fidgetin-like 1 [Homo sapiens] gi|119581379|gb|EAW60975.1| fidgetin-like 1, isoform CRA_a [Homo sapiens] gi|119581380|gb|EAW60976.1| fidgetin-like 1, isoform CRA_a [Homo sapiens] gi|190690423|gb|ACE86986.1| fidgetin-like 1 protein [synthetic construct] Length = 674 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|332865235|ref|XP_001154105.2| PREDICTED: fidgetin-like 1 isoform 5 [Pan troglodytes] gi|332865237|ref|XP_003339446.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865239|ref|XP_003318482.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865241|ref|XP_003339447.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865243|ref|XP_003318484.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865245|ref|XP_527740.3| PREDICTED: fidgetin-like 1 isoform 6 [Pan troglodytes] gi|332865247|ref|XP_001153855.2| PREDICTED: fidgetin-like 1 isoform 2 [Pan troglodytes] gi|332865249|ref|XP_003339448.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865251|ref|XP_003318486.1| PREDICTED: fidgetin-like 1 [Pan troglodytes] gi|332865253|ref|XP_001153978.2| PREDICTED: fidgetin-like 1 isoform 3 [Pan troglodytes] Length = 674 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|229541281|ref|ZP_04430341.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1] gi|229325701|gb|EEN91376.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1] Length = 718 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 21/96 (21%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L + +IGQ++A R VA A+R R R A L+ + P + L VGPTGVGKT +++RLA Sbjct: 427 LAKKVIGQEEAVRKVAKAIR-RSR-----AGLKAQSRPIGSFLFVGPTGVGKTELTKRLA 480 Query: 75 -RLAGA--PFIKVEVTKFTE-----------IGYVG 96 L G I+++++++ E GYVG Sbjct: 481 EELFGTKDAMIRLDMSEYMEKHSVSKLIGAPAGYVG 516 >gi|114613355|ref|XP_001154038.1| PREDICTED: similar to Fidgetin-like 1 isoform 4 [Pan troglodytes] Length = 674 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|114328467|ref|YP_745624.1| clpB protein [Granulibacter bethesdensis CGDNIH1] gi|114316641|gb|ABI62701.1| clpB protein [Granulibacter bethesdensis CGDNIH1] Length = 865 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ+DA RAVA A+R R R A L+D P + L +GPTGVGKT +++ L Sbjct: 568 ELRQRVVGQEDALRAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 621 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 622 AEFLFDDDRAMVRIDMSEFMEKHAVSR 648 >gi|148235265|ref|NP_001086763.1| fidgetin-like protein 1 [Xenopus laevis] gi|82235765|sp|Q6DDU8|FIGL1_XENLA RecName: Full=Fidgetin-like protein 1 gi|50415868|gb|AAH77410.1| Fignl1-prov protein [Xenopus laevis] Length = 655 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 415 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFTVA 470 >gi|33240787|ref|NP_875729.1| cell division protein FtsH3 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238316|gb|AAQ00382.1| Cell division protein FtsH [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 621 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEQA 258 >gi|313891687|ref|ZP_07825294.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E] gi|313119965|gb|EFR43150.1| cell division protease FtsH [Dialister microaerophilus UPII 345-E] Length = 613 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK +A LRN R + A + PK +LLVGP G GKT ++R +A Sbjct: 155 VAGADEAKEELAEVVDFLRNPGRYTDIGAKI-----PKGVLLVGPPGTGKTLLARAVAGE 209 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 210 ARVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|297288307|ref|XP_001083559.2| PREDICTED: fidgetin-like protein 1-like isoform 1 [Macaca mulatta] gi|297288309|ref|XP_002803318.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Macaca mulatta] gi|297288311|ref|XP_002803319.1| PREDICTED: fidgetin-like protein 1-like isoform 3 [Macaca mulatta] gi|297288313|ref|XP_002803320.1| PREDICTED: fidgetin-like protein 1-like isoform 4 [Macaca mulatta] gi|297288315|ref|XP_002803321.1| PREDICTED: fidgetin-like protein 1-like isoform 5 [Macaca mulatta] Length = 674 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|296118973|ref|ZP_06837546.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306] gi|295968071|gb|EFG81323.1| cell division protein FtsH [Corynebacterium ammoniagenes DSM 20306] Length = 853 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|162147426|ref|YP_001601887.1| chaperone clpB [Gluconacetobacter diazotrophicus PAl 5] gi|161786003|emb|CAP55585.1| Chaperone clpB [Gluconacetobacter diazotrophicus PAl 5] Length = 847 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R ++GQ+ A +AVA A+R R R A L+D P + L +GPTGVGKT + + L Sbjct: 569 ELRRLVVGQEPALKAVANAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELCKAL 622 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++V +++F E V R Sbjct: 623 ARFLFDDEKALLRVNMSEFMEKHAVSR 649 >gi|315640558|ref|ZP_07895666.1| cell division protein FtsH [Enterococcus italicus DSM 15952] gi|315483762|gb|EFU74250.1| cell division protein FtsH [Enterococcus italicus DSM 15952] Length = 699 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 235 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDTA 291 >gi|194476661|ref|YP_002048840.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora] gi|171191668|gb|ACB42630.1| FtsH ATP-dependent protease-like protein [Paulinella chromatophora] Length = 629 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF + ++F E+ +VG + +RDL Sbjct: 212 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFALSGSEFVEM-FVGVGASR-VRDL 264 >gi|149704647|ref|XP_001498326.1| PREDICTED: fidgetin-like 1 [Equus caballus] Length = 677 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492 >gi|327399481|ref|YP_004340350.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411] gi|327182110|gb|AEA34291.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411] Length = 612 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LLVG GVGKT ++ A AG PFI + ++F E+ +VG + +RDL + A Sbjct: 197 PKGVLLVGVPGVGKTLFAKATAGEAGVPFISISGSEFIEM-FVGVGASR-VRDLFNEA 252 >gi|317479380|ref|ZP_07938514.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides sp. 4_1_36] gi|316904454|gb|EFV26274.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides sp. 4_1_36] Length = 746 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558 >gi|315122873|ref|YP_004063362.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496275|gb|ADR52874.1| metalloprotease [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 660 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 192 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 249 Query: 112 N 112 N Sbjct: 250 N 250 >gi|310814544|ref|YP_003962508.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25] gi|308753279|gb|ADO41208.1| chaperone protein clpB [Ketogulonicigenium vulgare Y25] Length = 870 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ++A AVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGRRVIGQREAVHAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A +++++++F E V R Sbjct: 616 AEFLFDDDTAMVRIDMSEFMEKHSVAR 642 >gi|296209257|ref|XP_002751459.1| PREDICTED: fidgetin-like protein 1-like [Callithrix jacchus] Length = 674 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] gi|254040222|gb|ACT57018.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237 Query: 112 N 112 N Sbjct: 238 N 238 >gi|254393823|ref|ZP_05008935.1| cell division protein [Streptomyces clavuligerus ATCC 27064] gi|197707422|gb|EDY53234.1| cell division protein [Streptomyces clavuligerus ATCC 27064] Length = 685 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 273 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 332 Query: 110 AINIV 114 A IV Sbjct: 333 APAIV 337 >gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806] Length = 654 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDL 288 >gi|10434929|dbj|BAB14426.1| unnamed protein product [Homo sapiens] Length = 674 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|270293656|ref|ZP_06199858.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275123|gb|EFA20983.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 746 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558 >gi|229551624|ref|ZP_04440349.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1] gi|258540709|ref|YP_003175208.1| cell division protein FtsH [Lactobacillus rhamnosus Lc 705] gi|229315028|gb|EEN81001.1| M41 family endopeptidase FtsH [Lactobacillus rhamnosus LMS2-1] gi|257152385|emb|CAR91357.1| Cell division protein FtsH [Lactobacillus rhamnosus Lc 705] Length = 716 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277 >gi|294815367|ref|ZP_06774010.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064] gi|326443720|ref|ZP_08218454.1| cell division protein FtsH-like protein [Streptomyces clavuligerus ATCC 27064] gi|294327966|gb|EFG09609.1| FtsH cell division protein [Streptomyces clavuligerus ATCC 27064] Length = 677 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP +LL GP G GKT ++R +A AG PF ++F E +G V ++ + V Sbjct: 265 MPGGVLLAGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 324 Query: 110 AINIV 114 A IV Sbjct: 325 APAIV 329 >gi|199598785|ref|ZP_03212197.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001] gi|199590290|gb|EDY98384.1| ATP-dependent Zn protease [Lactobacillus rhamnosus HN001] Length = 716 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277 >gi|114776816|ref|ZP_01451859.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans PV-1] gi|114552902|gb|EAU55333.1| ATP-dependent metalloprotease FtsH [Mariprofundus ferrooxydans PV-1] Length = 643 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPKGVLLVGPPGTGKTLLARAIAGEAEVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|315320470|ref|YP_004072526.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005] gi|283568943|gb|ADB27480.1| metallo-endopeptidase FtsH [Thalassiosira oceanica CCMP1005] Length = 642 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A A PF V ++F E+ ++G + +RDL A Sbjct: 215 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFQKA 271 >gi|299141873|ref|ZP_07035008.1| cell division protein FtsH [Prevotella oris C735] gi|298576724|gb|EFI48595.1| cell division protein FtsH [Prevotella oris C735] Length = 681 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ V L+N + +L + PK LLVGP G GKT +++ +A Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RD+ A Sbjct: 260 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFSQA 291 >gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44] gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44] Length = 642 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238 >gi|258509509|ref|YP_003172260.1| cell division protein FtsH [Lactobacillus rhamnosus GG] gi|257149436|emb|CAR88409.1| Cell division protein FtsH [Lactobacillus rhamnosus GG] gi|259650777|dbj|BAI42939.1| ATP-dependent Zn protease FtsH [Lactobacillus rhamnosus GG] Length = 716 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 221 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 277 >gi|197294814|ref|YP_001799355.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] gi|171854141|emb|CAM12133.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] Length = 705 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 49 DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107 D++ PK LL GP G GKT + + L+ A FI+ E +K + YVG VE+ + + Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368 Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140 D I + E +R D+ + SIN IL L G Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410 >gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 654 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVEL-FVGTGAAR-VRDL 288 >gi|89069066|ref|ZP_01156447.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola granulosus HTCC2516] gi|89045435|gb|EAR51500.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicola granulosus HTCC2516] Length = 776 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 463 KDLEGSLKRVVFGQDPAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++L+++ G ++ +++++ E GYVG + ++ D VD + V Sbjct: 517 VAKQLSQILGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 573 >gi|67541767|ref|XP_664651.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4] gi|40742503|gb|EAA61693.1| hypothetical protein AN7047.2 [Aspergillus nidulans FGSC A4] gi|259483637|tpe|CBF79190.1| TPA: membrane-spanning ATPase, putative (AFU_orthologue; AFUA_4G03990) [Aspergillus nidulans FGSC A4] Length = 410 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 140 PSGVLLYGPPGCGKTMLAKALAHESGASFINLHISTLTEKWYGDSN------KLVNAVFS 193 Query: 113 IVRE 116 + R+ Sbjct: 194 LARK 197 >gi|328949957|ref|YP_004367292.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] gi|328450281|gb|AEB11182.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] Length = 630 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PFI + F E+ +VG + +RDL + A Sbjct: 186 IPRGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 242 >gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC 17745] gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27] gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC 17745] gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27] Length = 642 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238 >gi|193786555|dbj|BAG51338.1| unnamed protein product [Homo sapiens] Length = 674 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 667 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL A Sbjct: 235 IPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFIEL-FVGTGAAR-VRDLFKQA 291 >gi|148242853|ref|YP_001228010.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147851163|emb|CAK28657.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 626 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 204 IPKGVLLVGPPGTGKTLLSKAVAGEADVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 260 >gi|77918833|ref|YP_356648.1| cell division protein [Pelobacter carbinolicus DSM 2380] gi|123743049|sp|Q3A579|FTSH_PELCD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|77544916|gb|ABA88478.1| cell division protein [Pelobacter carbinolicus DSM 2380] Length = 646 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+ +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 209 PRGVLLVGPPGTGKTLMARAVAGEAEVPFFTISASQFIEM-FVGVGASR-VRDLFNNA 264 >gi|313680777|ref|YP_004058516.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus DSM 14977] gi|313153492|gb|ADR37343.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus DSM 14977] Length = 630 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PFI + F E+ +VG + +RDL + A Sbjct: 188 IPRGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 244 >gi|307822781|ref|ZP_07653012.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] gi|307736385|gb|EFO07231.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] Length = 640 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 20/108 (18%) Query: 2 KLTFNFSPREIVSELDRYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILL 58 K+T +FS + G ++AK VA LR+ + Q+L + P+ IL+ Sbjct: 146 KMTVHFSD----------VAGCEEAKEEVAELVDFLRDPQKFQKLGGQI-----PRGILM 190 Query: 59 VGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 VGP G GKT I+R +A AG F + + F E+ +VG + +RD+ Sbjct: 191 VGPPGTGKTLIARAIAGEAGVKFFTISGSDFVEM-FVGVGASR-VRDM 236 >gi|282878237|ref|ZP_06287033.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC 35310] gi|281299655|gb|EFA92028.1| ATP-dependent metallopeptidase HflB [Prevotella buccalis ATCC 35310] Length = 677 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + GQ AK+ V + + + Q DL ++ PK LLVGP G GKT +++ +A AG Sbjct: 202 VAGQAGAKQEVQ-EIVDFLKNPQKYTDLGGKI-PKGALLVGPPGTGKTLLAKAVAGEAGV 259 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDL 106 PF + + F E+ +VG + +RDL Sbjct: 260 PFFSMSGSDFVEM-FVGVGASR-VRDL 284 >gi|227509312|ref|ZP_03939361.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191242|gb|EEI71309.1| M41 family endopeptidase FtsH [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 717 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279 >gi|169335541|ref|ZP_02862734.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM 17244] gi|169258279|gb|EDS72245.1| hypothetical protein ANASTE_01956 [Anaerofustis stercorihominis DSM 17244] Length = 604 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A A PF + + F E+ +VG + +RDL + A Sbjct: 175 IPKGVLLVGPPGTGKTLLAKATAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFETA 231 >gi|154252573|ref|YP_001413397.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans DS-1] gi|154156523|gb|ABS63740.1| ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans DS-1] Length = 641 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|330443787|ref|YP_004376773.1| cell division protein FtsH [Chlamydophila pecorum E58] gi|328806897|gb|AEB41070.1| cell division protein FtsH [Chlamydophila pecorum E58] Length = 909 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT I++ ++ A PF + + F E+ +VG + IRD+ D A Sbjct: 453 IPKGVLLIGPPGTGKTLIAKAVSGEANRPFFSIAGSDFVEM-FVGVGASR-IRDMFDQA 509 >gi|330790803|ref|XP_003283485.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum] gi|325086595|gb|EGC39982.1| hypothetical protein DICPUDRAFT_44885 [Dictyostelium purpureum] Length = 627 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++PK ILLVGP G GKT +++ LA A FI + ++F E +VG + +RDL A Sbjct: 52 VIPKGILLVGPPGTGKTLLAKSLAGEAQVSFITINGSEFEE-AFVGVGARR-VRDLFQTA 109 >gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] Length = 633 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L+N + ++ A P+ LLVGP G GKT +++ +A Sbjct: 183 VAGQDEAKESLQEIVSFLKNPDKYTEIGARC-----PRGALLVGPPGTGKTLLAKAVAGE 237 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F ++ ++F E+ +VGR + +RDL A Sbjct: 238 AGVTFFQISGSEFVEM-FVGRGAAK-VRDLFKEA 269 >gi|254382002|ref|ZP_04997364.1| cell division protein [Streptomyces sp. Mg1] gi|194340909|gb|EDX21875.1| cell division protein [Streptomyces sp. Mg1] Length = 652 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91 LRN R Q+L A MP +LL G G GKT ++R +A AG PF ++F E Sbjct: 217 LRNPQRYQRLGAR-----MPGGVLLAGAPGTGKTLLARAVAGEAGVPFFSASASEFIEMI 271 Query: 92 IGYVGRNVEQIIRDLVDVAINIV 114 +G V ++ + VA IV Sbjct: 272 VGVGASRVRELFAEARKVAPAIV 294 >gi|153854579|ref|ZP_01995849.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814] gi|149752888|gb|EDM62819.1| hypothetical protein DORLON_01844 [Dorea longicatena DSM 13814] Length = 671 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 171 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 225 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ YVG + +RDL Sbjct: 226 AKVPFFSLSGSAFVEM-YVGVGASR-VRDL 253 >gi|39939199|ref|NP_950965.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39722308|dbj|BAD04798.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 364 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LL GP G GKT +++ LA AG PF V ++F E YVG Sbjct: 4 CIPKGVLLSGPPGTGKTLLAKALAGEAGVPFYAVSGSEFVE-RYVG 48 >gi|30468153|ref|NP_849040.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain 10D] gi|14423723|sp|Q9TJ83|FTSH_CYAME RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName: Full=FtsHCP gi|6539506|dbj|BAA88165.1| FtsH (FtsHcp) [Cyanidioschyzon merolae] gi|30409253|dbj|BAC76202.1| cell division protein ftsH homolog [Cyanidioschyzon merolae strain 10D] Length = 603 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL Sbjct: 186 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDL 238 >gi|326435213|gb|EGD80783.1| 26S protease regulatory subunit [Salpingoeca sp. ATCC 50818] Length = 878 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LVGP G GKT +++ +A AG PF+ V + F E+ +VG + +RDL A Sbjct: 444 VPKGAMLVGPPGTGKTLLAKAVAGEAGVPFLAVSGSDFVEM-FVGVGPSR-VRDLFKQA 500 >gi|307296254|ref|ZP_07576081.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1] gi|306878056|gb|EFN09279.1| ATP-dependent chaperone ClpB [Sphingobium chlorophenolicum L-1] Length = 860 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL + +IGQ DA +AV+ A+R R R A L+D P + L +GPTGVGKT +++ Sbjct: 566 AELGKRVIGQADAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 619 Query: 73 LARLA---GAPFIKVEVTKFTEIGYVGR 97 LA + +++++++F E V R Sbjct: 620 LAGFLFDDDSAMVRIDMSEFMEKHSVAR 647 >gi|238019647|ref|ZP_04600073.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748] gi|237863688|gb|EEP64978.1| hypothetical protein VEIDISOL_01521 [Veillonella dispar ATCC 17748] Length = 642 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 238 >gi|227522410|ref|ZP_03952459.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290] gi|227090468|gb|EEI25780.1| M41 family endopeptidase FtsH [Lactobacillus hilgardii ATCC 8290] Length = 717 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279 >gi|213404564|ref|XP_002173054.1| ATP-dependent metalloprotease YME1L1 [Schizosaccharomyces japonicus yFS275] gi|212001101|gb|EEB06761.1| ATP-dependent metalloprotease YME1L1 [Schizosaccharomyces japonicus yFS275] Length = 730 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ILL GP G GKT ++R +A AG PF + ++F E+ +VG ++ +R+L A Sbjct: 321 LPRGILLTGPPGTGKTMLARAVAGEAGVPFFFMSGSQFDEM-FVGVGAKR-VRELFATA 377 >gi|189095436|ref|YP_001936449.1| cell division protein [Heterosigma akashiwo] gi|310943132|sp|B2XTF7|FTSH_HETA2 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|157694779|gb|ABV66055.1| ATP-dependent Zn protease; cell division protein FtsH homolog [Heterosigma akashiwo] gi|157778010|gb|ABV70196.1| ATP-dependent Zn protease [Heterosigma akashiwo] Length = 663 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PFI + ++F E+ +VG + +R+L + A Sbjct: 236 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFINISGSEFVEM-FVGVGAAR-VRNLFEKA 292 >gi|197294205|ref|YP_001798746.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] gi|171853532|emb|CAM11383.1| Putative IMP dehydrogenase/GMP reductase [Candidatus Phytoplasma australiense] Length = 706 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 49 DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV- 107 D++ PK LL GP G GKT + + L+ A FI+ E +K + YVG VE+ + + Sbjct: 310 DKIRPKGYLLYGPPGTGKTFLLKALSNECNAYFIEFEPSKLDKT-YVGEGVEEWEKIWME 368 Query: 108 ----DVAINIVRE-----SRRDEVREQASINAEERILDALVG 140 D I + E +R D+ + SIN IL L G Sbjct: 369 AERHDKTIIFIDEISGMANREDKNSNKTSINIVNNILTKLDG 410 >gi|166031033|ref|ZP_02233862.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC 27755] gi|166029300|gb|EDR48057.1| hypothetical protein DORFOR_00714 [Dorea formicigenerans ATCC 27755] Length = 616 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 173 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 227 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 228 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 259 >gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806] Length = 625 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257 >gi|332251814|ref|XP_003275045.1| PREDICTED: fidgetin-like protein 1 isoform 1 [Nomascus leucogenys] gi|332251816|ref|XP_003275046.1| PREDICTED: fidgetin-like protein 1 isoform 2 [Nomascus leucogenys] gi|332251818|ref|XP_003275047.1| PREDICTED: fidgetin-like protein 1 isoform 3 [Nomascus leucogenys] gi|332251820|ref|XP_003275048.1| PREDICTED: fidgetin-like protein 1 isoform 4 [Nomascus leucogenys] gi|332251822|ref|XP_003275049.1| PREDICTED: fidgetin-like protein 1 isoform 5 [Nomascus leucogenys] gi|332251824|ref|XP_003275050.1| PREDICTED: fidgetin-like protein 1 isoform 6 [Nomascus leucogenys] Length = 674 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|329851349|ref|ZP_08266106.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis biprosthecum C19] gi|328840195|gb|EGF89767.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Asticcacaulis biprosthecum C19] Length = 771 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68 R++ ++L R + GQ +A ++ A++ A LRD P L GPTGVGKT Sbjct: 459 RDMKTDLQRVVFGQDEAIEQLSTAIKLAR------AGLRDPQKPIGCYLFSGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++L+ G ++ +++++ E GY+G + ++ D VD Sbjct: 513 VAKQLSATMGIDLLRFDMSEYMERHTVSRLIGAPPGYIGHDQGGLLTDAVD 563 >gi|307822845|ref|ZP_07653076.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] gi|307736449|gb|EFO07295.1| ATP-dependent metalloprotease FtsH [Methylobacter tundripaludum SV96] Length = 650 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 MPK +L+VGP G GKT ++R ++ A PF + ++F E+ +VG + +R+L + A Sbjct: 239 MPKGVLIVGPPGTGKTLLARAVSGEAQVPFFNISGSEFIEL-FVGVGAAR-VRELFEQAR 296 Query: 112 N 112 N Sbjct: 297 N 297 >gi|297680434|ref|XP_002817996.1| PREDICTED: fidgetin-like protein 1-like isoform 1 [Pongo abelii] gi|297680436|ref|XP_002817997.1| PREDICTED: fidgetin-like protein 1-like isoform 2 [Pongo abelii] Length = 674 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 434 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 489 >gi|289577374|ref|YP_003476001.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9] gi|297543661|ref|YP_003675963.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527087|gb|ADD01439.1| Vesicle-fusing ATPase [Thermoanaerobacter italicus Ab9] gi|296841436|gb|ADH59952.1| Vesicle-fusing ATPase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 498 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 14/122 (11%) Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 K ILL GP G GKT +++ A+ + FI ++F E+ Y G ++ +R+L A NI Sbjct: 97 KGILLTGPPGTGKTLLAKAAAKYTNSSFIATSGSEFIEM-YAGVGAQR-VRNLFKTAKNI 154 Query: 114 VRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR------DGEISDKEIDI 167 R+ E + A I +E +D L K T+ + + + L DG SD E++I Sbjct: 155 ARK----EGKNSAIIFIDE--IDILGVKRGTNESHHEYDQTLNQLLVEMDGIKSDGEVNI 208 Query: 168 EV 169 V Sbjct: 209 LV 210 >gi|219853875|ref|YP_002470997.1| hypothetical protein CKR_0532 [Clostridium kluyveri NBRC 12016] gi|219567599|dbj|BAH05583.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 617 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 175 VAGQEEAKESLVEIVDFLHNSQKYASIGARL-----PKGALLVGPPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 230 AKVPFFSISGSAFVEM-FVGMGAAR-VRDLFQQA 261 >gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] Length = 894 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFNQA 256 >gi|326475753|gb|EGD99762.1| ATPase family AAA domain-containing protein [Trichophyton tonsurans CBS 112818] Length = 415 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|294678496|ref|YP_003579111.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodobacter capsulatus SB 1003] gi|294477316|gb|ADE86704.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Rhodobacter capsulatus SB 1003] Length = 773 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A +A A++ A LR+ P N L GPTGVGKT Sbjct: 460 RDLEKTLKRVVFGQDKAIETLASAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 514 VAKQLANTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570 >gi|289434265|ref|YP_003464137.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170509|emb|CBH27049.1| ATP-dependent Clp protease, ATP-binding subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 722 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KHLESNLSGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|311740143|ref|ZP_07713975.1| ATP-dependent metalloprotease FtsH [Corynebacterium pseudogenitalium ATCC 33035] gi|311304698|gb|EFQ80769.1| ATP-dependent metalloprotease FtsH [Corynebacterium pseudogenitalium ATCC 33035] Length = 785 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|227512324|ref|ZP_03942373.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577] gi|227084499|gb|EEI19811.1| M41 family endopeptidase FtsH [Lactobacillus buchneri ATCC 11577] Length = 717 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 223 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 279 >gi|198274399|ref|ZP_03206931.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135] gi|198272765|gb|EDY97034.1| hypothetical protein BACPLE_00544 [Bacteroides plebeius DSM 17135] Length = 619 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L N + + A L PK LLVGP G GKT I+R +A Sbjct: 179 VAGQNEAKEMLKEIVDFLHNPKKYTDIGASL-----PKGALLVGPPGTGKTLIARAVAGE 233 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + ++F ++ +VG + +RDL Sbjct: 234 AKVPFFAISGSEFVQM-FVGMGAAK-VRDL 261 >gi|332702893|ref|ZP_08422981.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] gi|332553042|gb|EGJ50086.1| ATP-dependent metalloprotease FtsH [Desulfovibrio africanus str. Walvis Bay] Length = 628 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P+ +LLVGP G GKT ++R +A AG PF + + F E+ +VG ++ Sbjct: 209 VPRGVLLVGPPGCGKTLLARAVAGEAGVPFFSITGSDFMEM-FVGVGASRV 258 >gi|331091603|ref|ZP_08340437.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403360|gb|EGG82919.1| hypothetical protein HMPREF9477_01080 [Lachnospiraceae bacterium 2_1_46FAA] Length = 666 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 184 VAGQDEAKESLQEVVDFLHNPGKYTSIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 239 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 270 >gi|327274995|ref|XP_003222259.1| PREDICTED: fidgetin-like protein 1-like [Anolis carolinensis] Length = 688 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503 >gi|294084617|ref|YP_003551375.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664190|gb|ADE39291.1| ATPase with chaperone activity, ATP-binding subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 764 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 18/106 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ A A++ A++ A LR+ P N L GPTGVGKT ++R+L Sbjct: 453 DLKRLVFGQDAAISALSSAIKLSR------AGLREVEKPVGNYLFSGPTGVGKTEVARQL 506 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 A G I+ +++++ E GYVG + ++ D VD Sbjct: 507 AEALGIKLIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVD 552 >gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba] gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba] Length = 735 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 331 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 387 >gi|160888887|ref|ZP_02069890.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492] gi|156861786|gb|EDO55217.1| hypothetical protein BACUNI_01307 [Bacteroides uniformis ATCC 8492] Length = 746 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 458 IYGQEEAVRQVVEAV------QMSKAGLLDENKPLASLLFVGPTGVGKTEVAKVLAAELG 511 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 512 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 558 >gi|254495433|ref|ZP_05108357.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp. MED152] gi|85819788|gb|EAQ40945.1| AAA-metalloprotease FtsH, with ATPase domain [Polaribacter sp. MED152] Length = 657 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 227 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 283 >gi|282892294|ref|ZP_06300690.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497885|gb|EFB40236.1| hypothetical protein pah_c221o026 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 915 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L +GP G GKT I++ +A A PF + + F E+ +VG + IRD+ D A Sbjct: 457 IPKGVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASR-IRDMFDQA 513 >gi|81300123|ref|YP_400331.1| FtsH-2 peptidase [Synechococcus elongatus PCC 7942] gi|81169004|gb|ABB57344.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Synechococcus elongatus PCC 7942] Length = 623 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257 >gi|15805615|ref|NP_294311.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus radiodurans R1] gi|6458286|gb|AAF10168.1|AE001917_5 ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus radiodurans R1] Length = 741 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 18/106 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 ++L+R + GQ+ A AV+ A++ A LR+ P+ + L GPTGVGKT ++R Sbjct: 450 ADLNRRVYGQEPAVSAVSSAVKLAR------AGLRNPQKPQGSFLFAGPTGVGKTELARA 503 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 LA G I+ +++++ E GYVG + ++ D V Sbjct: 504 LAERLGVELIRFDMSEYQEPHTVARLIGAPPGYVGFDQGGLLTDAV 549 >gi|116626116|ref|YP_828272.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus Ellin6076] gi|116229278|gb|ABJ87987.1| ATP-dependent metalloprotease FtsH [Candidatus Solibacter usitatus Ellin6076] Length = 618 Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 174 IPKGVLLIGPPGTGKTLLARAIAGEASVPFFSISGSDFVEM-FVGVGASR-VRDLFE 228 >gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str. F0412] gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str. F0412] Length = 642 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 186 IPKGVLLAGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFTQA 242 >gi|217967257|ref|YP_002352763.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724] gi|217336356|gb|ACK42149.1| ATP-dependent metalloprotease FtsH [Dictyoglomus turgidum DSM 6724] Length = 607 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ILLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 189 IPRGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFTQA 245 >gi|297563907|ref|YP_003682880.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848356|gb|ADH70374.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 836 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL R +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHRRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I++++++F E V R Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDALIQLDMSEFMEKHTVSR 589 >gi|295395582|ref|ZP_06805776.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294971601|gb|EFG47482.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 870 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ DA ++V+ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRIIGQNDAIKSVSRAIR-RTR-----AGLKDPKRPSGSFI 546 Query: 58 LVGPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVGR 97 GPTGVGKT +++ LA L G + I +++++F+E V R Sbjct: 547 FAGPTGVGKTELAKALAEFLFGDESALISLDMSEFSEKHTVSR 589 >gi|227823185|ref|YP_002827157.1| endopeptidase Clp ATP-binding chain B ClpB [Sinorhizobium fredii NGR234] gi|227342186|gb|ACP26404.1| endopeptidase Clp ATP-binding chain B ClpB [Sinorhizobium fredii NGR234] Length = 868 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++++GQ DA +AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RAR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++V+++++ E V R Sbjct: 621 ARFLFDDETALMRVDMSEYMEKHSVAR 647 >gi|78212463|ref|YP_381242.1| FtsH-2 peptidase [Synechococcus sp. CC9605] gi|78196922|gb|ABB34687.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 624 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258 >gi|21672930|ref|NP_660995.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium tepidum TLS] gi|54035862|sp|Q8KG79|CLPB1_CHLTE RecName: Full=Probable chaperone protein ClpB 1 gi|21645986|gb|AAM71337.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium tepidum TLS] Length = 438 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 10/92 (10%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 I SEL R ++GQ +A RAV+ A++ R R A + DE P + + +GPTGVGKT ++ Sbjct: 135 IESELHRRVVGQDEAVRAVSDAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188 Query: 71 RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99 R LA I+++++++ E V R V Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220 >gi|258405847|ref|YP_003198589.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM 5692] gi|257798074|gb|ACV69011.1| ATP-dependent metalloprotease FtsH [Desulfohalobium retbaense DSM 5692] Length = 636 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT +SR +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGGPGTGKTLLSRAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC 29176] gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC 29176] Length = 622 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q++ A + PK LLVGP G GKT +++ +A A PF + ++F E+ Sbjct: 188 LHNPKKYQEIGA-----VCPKGALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 242 FVGMGASK-VRDLFKQA 257 >gi|78185050|ref|YP_377485.1| peptidase M41, FtsH [Synechococcus sp. CC9902] gi|78169344|gb|ABB26441.1| FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 [Synechococcus sp. CC9902] Length = 629 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 207 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 263 >gi|11467496|ref|NP_043642.1| ORF 644 [Odontella sinensis] gi|1706925|sp|P49825|FTSH_ODOSI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|1185191|emb|CAA91674.1| ORF 644 [Odontella sinensis] Length = 644 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVGP G GKT +++ +A A PF V ++F E+ ++G + +RDL A Sbjct: 218 IPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEM-FIGIGAAR-VRDLFKKA 274 >gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens YS-314] gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens YS-314] Length = 812 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] Length = 818 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta] gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta] Length = 737 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 333 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 389 >gi|119953564|ref|YP_945774.1| cell division protein FtsH [Borrelia turicatae 91E135] gi|119862335|gb|AAX18103.1| cell division protein FtsH [Borrelia turicatae 91E135] Length = 635 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 175 VAGQEEAKQELREVVEFLKNPKKFEKIGARI-----PKGVLLVGSPGTGKTLLAKAVAGE 229 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 230 AGVNFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 261 >gi|124003041|ref|ZP_01687892.1| respiratory chain complexes assembly protein RCA1 [Microscilla marina ATCC 23134] gi|123991691|gb|EAY31099.1| respiratory chain complexes assembly protein RCA1 [Microscilla marina ATCC 23134] Length = 696 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 239 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 295 >gi|326482686|gb|EGE06696.1| ATPase family AAA domain-containing protein 1-B [Trichophyton equinum CBS 127.97] Length = 415 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|301764501|ref|XP_002917669.1| PREDICTED: fidgetin-like protein 1-like [Ailuropoda melanoleuca] gi|281343445|gb|EFB19029.1| hypothetical protein PANDA_006009 [Ailuropoda melanoleuca] Length = 676 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 436 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 491 >gi|270047789|pdb|3KDS|E Chain E, Apo-Ftsh Crystal Structure gi|270047790|pdb|3KDS|F Chain F, Apo-Ftsh Crystal Structure gi|270047791|pdb|3KDS|G Chain G, Apo-Ftsh Crystal Structure Length = 465 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 MPK ILLVGP G G T ++R +A A PF + + F E+ +VG + +RDL Sbjct: 48 MPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVGVGAAR-VRDL 100 >gi|224436695|ref|ZP_03657699.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG 18818] gi|313143193|ref|ZP_07805386.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG 18818] gi|313128224|gb|EFR45841.1| ATP-dependent zinc metalloproteinase [Helicobacter cinaedi CCUG 18818] Length = 560 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LLVGP GVGKT I++ +A A PF + F +I Y G +++ Sbjct: 194 LPKGVLLVGPPGVGKTMIAKAVAGEANVPFFYQSGSSFVQI-YAGMGAKRV 243 >gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia] gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia] Length = 739 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 335 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 391 >gi|29829142|ref|NP_823776.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] gi|29606248|dbj|BAC70311.1| putative ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] Length = 842 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +SR LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSRALAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|56750248|ref|YP_170949.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] gi|56685207|dbj|BAD78429.1| ATP-dependent Zn protease [Synechococcus elongatus PCC 6301] Length = 627 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEARVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 261 >gi|317505297|ref|ZP_07963226.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606] gi|315663600|gb|EFV03338.1| ATP-dependent metalloprotease FtsH [Prevotella salivae DSM 15606] Length = 683 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ V L+N + +L + PK LLVGP G GKT +++ +A Sbjct: 205 VAGQEGAKQEVQEIVEFLKNPQKYTELGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 259 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF + + F E+ +VG Sbjct: 260 AGVPFFSMSGSDFVEM-FVG 278 >gi|283850416|ref|ZP_06367705.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio sp. FW1012B] gi|283574442|gb|EFC22413.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfovibrio sp. FW1012B] Length = 762 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 9/86 (10%) Query: 14 SELDRYIIGQQDAKRAVAIA-LRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISR 71 EL I GQ +A A++ A LR+R A L + P + LL GPTGVGKT +++ Sbjct: 449 GELKGLIYGQDEAVEAISKAILRSR-------AGLANAGKPTGSFLLAGPTGVGKTEMAK 501 Query: 72 RLARLAGAPFIKVEVTKFTEIGYVGR 97 +LA + G F++ +++++ E V R Sbjct: 502 QLAAVLGINFVRFDMSEYMEKHAVAR 527 >gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019] gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019] Length = 751 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +R+L D A Sbjct: 275 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 331 >gi|329123416|ref|ZP_08251980.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC 11116] gi|327470998|gb|EGF16453.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC 11116] Length = 638 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989] gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989] Length = 651 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ A Sbjct: 192 IPKGILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGTGASR-VRDMFKTA 248 >gi|218437468|ref|YP_002375797.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218170196|gb|ACK68929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 655 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 235 IPKGVLLIGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 291 >gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 625 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG F + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 257 >gi|222053541|ref|YP_002535903.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221562830|gb|ACM18802.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 586 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 M ILLVGP G GKT ++R +A AG PF + ++F E+ YVG + +RDL Sbjct: 178 MLTGILLVGPPGTGKTLLARAVAGEAGVPFFSMSGSEFVEM-YVGVGSSR-VRDL 230 >gi|301170081|emb|CBW29685.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae 10810] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|297243774|ref|ZP_06927704.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis AMD] gi|296888195|gb|EFH26937.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis AMD] Length = 769 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +R+L D A Sbjct: 259 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 315 >gi|302496375|ref|XP_003010189.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371] gi|291173730|gb|EFE29549.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371] Length = 426 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N Sbjct: 157 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 202 >gi|260436446|ref|ZP_05790416.1| cell division protease FtsH [Synechococcus sp. WH 8109] gi|260414320|gb|EEX07616.1| cell division protease FtsH [Synechococcus sp. WH 8109] Length = 624 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258 >gi|145632765|ref|ZP_01788498.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655] gi|144986421|gb|EDJ92987.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655] Length = 638 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|309973145|gb|ADO96346.1| ATP-dependent protease FtsH [Haemophilus influenzae R2846] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] Length = 595 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P+ ++L GP G GKT ++R LA AG PF V + F ++ YVG +I Sbjct: 187 IPRGVILYGPPGTGKTLLARALAGEAGVPFYAVSGSDFVQM-YVGVGAARI 236 >gi|317493620|ref|ZP_07952041.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918563|gb|EFV39901.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 648 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR+ R Q+L + PK IL+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|282899436|ref|ZP_06307403.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281195700|gb|EFA70630.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 272 >gi|258541380|ref|YP_003186813.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-01] gi|256632458|dbj|BAH98433.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-01] gi|256635515|dbj|BAI01484.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-03] gi|256638570|dbj|BAI04532.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-07] gi|256641624|dbj|BAI07579.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-22] gi|256644679|dbj|BAI10627.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-26] gi|256647734|dbj|BAI13675.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-32] gi|256650787|dbj|BAI16721.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653778|dbj|BAI19705.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO 3283-12] Length = 781 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 22/115 (19%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 +E++ L+R + GQ A A++ A++ A LRD P N L GPTGV Sbjct: 459 KEVLRSLERDLKGMVFGQDQAIDALSAAIKLAR------AGLRDAEKPIGNYLFSGPTGV 512 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 GKT ++R+LA G ++ +++++ E GYVG + ++ D +D Sbjct: 513 GKTEVARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAID 567 >gi|255325836|ref|ZP_05366928.1| membrane protease FtsH catalytic subunit [Corynebacterium tuberculostearicum SK141] gi|255297048|gb|EET76373.1| membrane protease FtsH catalytic subunit [Corynebacterium tuberculostearicum SK141] Length = 785 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura] gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura] Length = 745 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 341 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 397 >gi|197103300|ref|YP_002128678.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1] gi|196480576|gb|ACG80103.1| ATP-dependent metalloprotease [Phenylobacterium zucineum HLK1] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A AG F + ++F E+ +VG + +RDL + A Sbjct: 197 IPKGVLLVGPPGTGKTLLARAVAGEAGVKFFSITGSEFVEM-FVGVGAAR-VRDLFEQA 253 >gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis] gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis] Length = 744 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 340 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 396 >gi|148826966|ref|YP_001291719.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG] gi|148718208|gb|ABQ99335.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster] gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster] gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster] gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct] gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct] Length = 736 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 332 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 388 >gi|16273245|ref|NP_439486.1| cell division protein [Haemophilus influenzae Rd KW20] gi|2492507|sp|P71377|FTSH_HAEIN RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|1574793|gb|AAC22979.1| cell division protein (ftsH) [Haemophilus influenzae Rd KW20] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|88703372|ref|ZP_01101088.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Congregibacter litoralis KT71] gi|88702086|gb|EAQ99189.1| ATP-dependent clp protease, ATP-binding subunit ClpA [Congregibacter litoralis KT71] Length = 765 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 S L + GQ DA +++ +++ A LR P + LL GPTGVGKT ++R+ Sbjct: 458 SNLKMVVFGQDDAVSSLSTSIK------MARAGLRGGDKPIGSFLLAGPTGVGKTEVTRQ 511 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGR 97 LA++ G I+ +++++ E V R Sbjct: 512 LAKILGLELIRFDMSEYMERHTVSR 536 >gi|331701915|ref|YP_004398874.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL B-30929] gi|329129258|gb|AEB73811.1| ATP-dependent metalloprotease FtsH [Lactobacillus buchneri NRRL B-30929] Length = 711 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 222 IPHGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 278 >gi|325282894|ref|YP_004255435.1| ATPase AAA-2 domain-containing protein [Deinococcus proteolyticus MRP] gi|324314703|gb|ADY25818.1| ATPase AAA-2 domain protein [Deinococcus proteolyticus MRP] Length = 755 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 18/106 (16%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRR 72 S+L + GQ A AVA A++ A LRD P+ + L GPTGVGKT ++R Sbjct: 455 SDLAARVFGQDKAVEAVASAVKLAR------AGLRDPQKPQGMFLFAGPTGVGKTELARA 508 Query: 73 LARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107 LA G I+ +++++ E GYVG + ++ D V Sbjct: 509 LADRLGVELIRFDMSEYGEAHTVARLIGAPPGYVGFDQGGLLTDAV 554 >gi|291546955|emb|CBL20063.1| ATP-dependent metalloprotease FtsH [Ruminococcus sp. SR1/5] Length = 712 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 187 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 241 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + ++F E+ +VG + +RDL + A Sbjct: 242 AQVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 273 >gi|302666472|ref|XP_003024835.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517] gi|291188908|gb|EFE44224.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517] Length = 416 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200 Query: 113 IVRE 116 + R+ Sbjct: 201 LARK 204 >gi|261494532|ref|ZP_05991017.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309825|gb|EEY11043.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2 str. OVINE] Length = 647 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RDL D A Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEARVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 243 >gi|229844056|ref|ZP_04464197.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae 6P18H1] gi|229813050|gb|EEP48738.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae 6P18H1] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|210615344|ref|ZP_03290508.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787] gi|210150371|gb|EEA81380.1| hypothetical protein CLONEX_02724 [Clostridium nexile DSM 1787] Length = 688 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 202 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 256 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 257 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 288 >gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans] gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans] Length = 603 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 247 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 303 >gi|116072384|ref|ZP_01469651.1| Peptidase M41, FtsH [Synechococcus sp. BL107] gi|116064906|gb|EAU70665.1| Peptidase M41, FtsH [Synechococcus sp. BL107] Length = 624 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +S+ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLSKAVAGEAEVPFFIISGSEFVEL-FVGAGAAR-VRDLFEEA 258 >gi|15614742|ref|NP_243045.1| ATP-dependent proteinase [Bacillus halodurans C-125] gi|10174798|dbj|BAB05898.1| ATP-dependent proteinase [Bacillus halodurans C-125] Length = 711 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 20/103 (19%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 +++ + L R +IGQ +A VA A++ R R A L+ + P + + VGPTGVGKT + Sbjct: 414 KDLHNRLARQVIGQAEAVEKVAKAIK-RSR-----AGLKPKNRPISFMFVGPTGVGKTEL 467 Query: 70 SRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGRN 98 ++ LA+ L G+ I++++++F E GYVG + Sbjct: 468 TKTLAQELFGSKEAMIRLDMSEFMEKHSVSKLIGSPPGYVGHD 510 >gi|68250004|ref|YP_249116.1| cell division protein FtsH-like protein [Haemophilus influenzae 86-028NP] gi|145630773|ref|ZP_01786551.1| RNA polymerase sigma factor [Haemophilus influenzae R3021] gi|145634956|ref|ZP_01790663.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA] gi|145638915|ref|ZP_01794523.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII] gi|68058203|gb|AAX88456.1| cell division protein FtsH homolog 1 [Haemophilus influenzae 86-028NP] gi|144983655|gb|EDJ91115.1| RNA polymerase sigma factor [Haemophilus influenzae R3021] gi|145267822|gb|EDK07819.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA] gi|145271887|gb|EDK11796.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII] gi|309750888|gb|ADO80872.1| ATP-dependent protease FtsH [Haemophilus influenzae R2866] Length = 635 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster] Length = 740 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 336 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 392 >gi|319442402|ref|ZP_07991558.1| cell division protein [Corynebacterium variabile DSM 44702] Length = 821 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 VPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFKTA 255 >gi|319897096|ref|YP_004135291.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031] gi|317432600|emb|CBY80961.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031] Length = 635 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|313638539|gb|EFS03696.1| negative regulator of genetic competence ClpC/MecB [Listeria seeligeri FSL S4-171] Length = 722 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 418 KHLESNLSGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 471 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 472 LGRTLARELFGTIEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 514 >gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella copri DSM 18205] gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella copri DSM 18205] Length = 761 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 12/82 (14%) Query: 45 ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92 A L D+ P ++L VGPTGVGKT ++R+LA+ G ++ +++++TE Sbjct: 495 AGLTDDDKPLASLLFVGPTGVGKTEVARQLAKELGIELVRFDMSEYTEKHTVAKLIGSPA 554 Query: 93 GYVGRNVEQIIRDLVDVAINIV 114 GYVG ++ D + N V Sbjct: 555 GYVGYEDGGLLTDAIRKTPNCV 576 >gi|254362181|ref|ZP_04978297.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213] gi|261492458|ref|ZP_05989013.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2 str. BOVINE] gi|153093750|gb|EDN74693.1| M41 family endopeptidase FtsH [Mannheimia haemolytica PHL213] gi|261311874|gb|EEY13022.1| M41 family endopeptidase FtsH [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 647 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RDL D A Sbjct: 187 IPKGILMVGPPGTGKTLLAKAIAGEARVPFFTMAGSDFVEM-FVGVGASR-VRDLFDQA 243 >gi|145629420|ref|ZP_01785218.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae 22.1-21] gi|144978263|gb|EDJ88027.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae 22.1-21] Length = 638 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A] gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A] Length = 372 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IGQ+ AK+ + R ++ + P+NIL GP+G GKT +++ LA Sbjct: 125 VIGQELAKQKCRLIERFLEEPERF-----GKWAPRNILFFGPSGTGKTMLAKALANKTDV 179 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P I V+ T+ IG YVG QI Sbjct: 180 PIIPVKATQL--IGEYVGDGARQI 201 >gi|283783577|ref|YP_003374331.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05] gi|298252656|ref|ZP_06976450.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis 5-1] gi|283441441|gb|ADB13907.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05] gi|297533020|gb|EFH71904.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis 5-1] Length = 769 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +R+L D A Sbjct: 259 IPRGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEM-FVGLGASR-VRELFDEA 315 >gi|319776274|ref|YP_004138762.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047] gi|317450865|emb|CBY87089.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047] Length = 635 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|315039979|ref|XP_003169367.1| ATPase family AAA domain-containing protein 1-B [Arthroderma gypseum CBS 118893] gi|311346057|gb|EFR05260.1| ATPase family AAA domain-containing protein 1-B [Arthroderma gypseum CBS 118893] Length = 417 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200 Query: 113 IVRE 116 + R+ Sbjct: 201 LARK 204 >gi|312082078|ref|XP_003143295.1| hypothetical protein LOAG_07714 [Loa loa] gi|307761541|gb|EFO20775.1| hypothetical protein LOAG_07714 [Loa loa] Length = 753 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG----RNVEQIIRDL 106 +PK LL GP G GKT +++ LA + PFI + T+F E IG +G RN+ + + + Sbjct: 319 LPKGALLTGPPGCGKTFLAKALATESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKM 378 Query: 107 VDVAINI 113 I I Sbjct: 379 APCIIYI 385 >gi|291410705|ref|XP_002721627.1| PREDICTED: fidgetin-like 1 [Oryctolagus cuniculus] Length = 677 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 437 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 492 >gi|296138309|ref|YP_003645552.1| ATPase AAA [Tsukamurella paurometabola DSM 20162] gi|296026443|gb|ADG77213.1| ATPase AAA-2 domain protein [Tsukamurella paurometabola DSM 20162] Length = 855 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 28/187 (14%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 517 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 570 Query: 74 AR-LAGA--PFIKVEVTKFTE-----------IGYVGRN-----VEQIIRDLVDVAINIV 114 A L G I++++ +F + GYVG E++ R V + Sbjct: 571 ANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDE 630 Query: 115 RESRRDEVREQASINAEERILDALVGKTAT-SNTREVFRKKLRDGEISDKEIDIEVADTS 173 E E+ E+ L G+T NT +F L G+IS K + + Sbjct: 631 IEKAHSEIYNTLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTGDIS-KAVGLGFTQGD 689 Query: 174 SDISNFD 180 SD +N+D Sbjct: 690 SDGANYD 696 >gi|224438185|ref|ZP_03659120.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG 18818] gi|313144630|ref|ZP_07806823.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG 18818] gi|313129661|gb|EFR47278.1| membrane bound zinc metallopeptidase [Helicobacter cinaedi CCUG 18818] Length = 631 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL ++A Sbjct: 203 IPRGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 259 >gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae] gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae] Length = 740 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF +F E+ VG+ + +RDL A Sbjct: 336 LPKGVLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEV-LVGQGARR-VRDLFKAA 392 >gi|149178953|ref|ZP_01857530.1| cell division protein FtsH [Planctomyces maris DSM 8797] gi|148842227|gb|EDL56613.1| cell division protein FtsH [Planctomyces maris DSM 8797] Length = 685 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 232 IPKGVLLVGPPGTGKTMLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDMFQQA 288 >gi|83945503|ref|ZP_00957850.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis alexandrii HTCC2633] gi|83851079|gb|EAP88937.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Oceanicaulis alexandrii HTCC2633] Length = 777 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 22/113 (19%) Query: 10 REIVSELDRYIIGQQDA--KRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGK 66 R++ + L R + GQ DA K A AI L A LR+ P + L GPTGVGK Sbjct: 457 RDLENSLKRVVFGQDDAIEKLASAIKLAR--------AGLREPNKPIGSYLFSGPTGVGK 508 Query: 67 TAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 T ++R+LA G ++ +++++ E GYVG + + D +D Sbjct: 509 TEVARQLADTLGVELLRFDMSEYMERHTVSRLLGAPPGYVGYDQGGQLTDAID 561 >gi|307153166|ref|YP_003888550.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306983394|gb|ADN15275.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 639 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 219 IPKGVLLIGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 275 >gi|148826496|ref|YP_001291249.1| ATP-dependent chaperone ClpB [Haemophilus influenzae PittEE] gi|229845911|ref|ZP_04466023.1| ClpB [Haemophilus influenzae 7P49H1] gi|148716656|gb|ABQ98866.1| ClpB [Haemophilus influenzae PittEE] gi|229810915|gb|EEP46632.1| ClpB [Haemophilus influenzae 7P49H1] Length = 856 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPISSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|145636178|ref|ZP_01791848.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH] gi|145270700|gb|EDK10633.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH] Length = 550 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 98 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 154 >gi|52425019|ref|YP_088156.1| HflB protein [Mannheimia succiniciproducens MBEL55E] gi|52307071|gb|AAU37571.1| HflB protein [Mannheimia succiniciproducens MBEL55E] Length = 634 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT I++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGILMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|224367621|ref|YP_002601784.1| FtsH [Desulfobacterium autotrophicum HRM2] gi|223690337|gb|ACN13620.1| FtsH [Desulfobacterium autotrophicum HRM2] Length = 670 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT +SR +A AG PF + + F E+ +VG + +RDL Sbjct: 187 IPKGVLLVGAPGTGKTLLSRAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDL 239 >gi|215408553|emb|CAR31126.1| HflB protein [Candidatus Phytoplasma mali] Length = 162 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 56 IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 114 Query: 112 N 112 N Sbjct: 115 N 115 >gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus marisnigri JR1] gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1] Length = 805 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 +QD + AV L R R + L + PK +LL GP G GKT I++ +A +GA F+ Sbjct: 466 KQDIREAVEYPLTERERFENLGIE-----PPKGVLLYGPPGTGKTLIAKAVASESGANFV 520 Query: 83 KVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114 V+ + +G R V +I + VA +I+ Sbjct: 521 PVKGPQLLSKWVGESERAVREIFKKARQVAPSII 554 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 PK +LL GP G GKT I++ +A +GA FI + Sbjct: 218 PKGVLLYGPPGTGKTLIAKAVASESGAHFISI 249 >gi|152979124|ref|YP_001344753.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes 130Z] gi|150840847|gb|ABR74818.1| ATP-dependent metalloprotease FtsH [Actinobacillus succinogenes 130Z] Length = 650 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT I++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 184 IPKGILMVGPPGTGKTLIAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|326917214|ref|XP_003204896.1| PREDICTED: fidgetin-like protein 1-like [Meleagris gallopavo] Length = 688 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503 >gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 371 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I+GQ++AK+ I ++ +L + PKN+L GP G GKT ++R LA + Sbjct: 126 IVGQEEAKKKCRIIMKYLED-----PELFGDWAPKNVLFYGPPGTGKTLMARALATETNS 180 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQIIRDLVDVA 110 FI V+ + IG +VG + ++IR+L A Sbjct: 181 SFILVKAPEL--IGEHVG-DASKMIRELYQKA 209 >gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus subsp. fetus 82-40] Length = 643 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 261 >gi|118086623|ref|XP_001234039.1| PREDICTED: fidgetin-like 1 [Gallus gallus] Length = 688 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 448 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 503 >gi|70982115|ref|XP_746586.1| membrane-spanning ATPase [Aspergillus fumigatus Af293] gi|66844209|gb|EAL84548.1| membrane-spanning ATPase, putative [Aspergillus fumigatus Af293] gi|159122179|gb|EDP47301.1| membrane-spanning ATPase, putative [Aspergillus fumigatus A1163] Length = 419 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|327298125|ref|XP_003233756.1| ATPase family AAA domain-containing protein [Trichophyton rubrum CBS 118892] gi|326463934|gb|EGD89387.1| ATPase family AAA domain-containing protein [Trichophyton rubrum CBS 118892] Length = 416 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200 Query: 113 IVRE 116 + R+ Sbjct: 201 LARK 204 >gi|237749838|ref|ZP_04580318.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC 43879] gi|229374588|gb|EEO24979.1| membrane bound zinc metallopeptidase [Helicobacter bilis ATCC 43879] Length = 635 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEKA 262 >gi|329666678|gb|AEB92626.1| cell division protein FtsH-like protein [Lactobacillus johnsonii DPC 6026] Length = 708 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|260581319|ref|ZP_05849135.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW] gi|260091986|gb|EEW75933.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW] Length = 336 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|256848388|ref|ZP_05553831.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis 101-4-CHN] gi|256714986|gb|EEU29964.1| ATP-dependent metalloprotease FtsH [Lactobacillus coleohominis 101-4-CHN] Length = 708 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 224 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 280 >gi|227888867|ref|ZP_04006672.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200] gi|227850704|gb|EEJ60790.1| M41 family endopeptidase FtsH [Lactobacillus johnsonii ATCC 33200] Length = 708 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|148242588|ref|YP_001227745.1| cell division protein FtsH [Synechococcus sp. RCC307] gi|147850898|emb|CAK28392.1| Cell division protein FtsH [Synechococcus sp. RCC307] Length = 647 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL Sbjct: 220 IPRGVLLVGPPGTGKTLLARAIAGEAEVPFFTLSASEFVEM-FVGVGASR-VRDL 272 >gi|32266321|ref|NP_860353.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC 51449] gi|32262371|gb|AAP77419.1| membrane bound zinc metallopeptidase [Helicobacter hepaticus ATCC 51449] Length = 611 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL ++A Sbjct: 182 IPRGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSSFIEM-FVGLGASR-VRDLFEMA 238 >gi|294791953|ref|ZP_06757101.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. 6_1_27] gi|294457183|gb|EFG25545.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. 6_1_27] Length = 815 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ +A AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|296818593|ref|XP_002849633.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae CBS 113480] gi|238840086|gb|EEQ29748.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae CBS 113480] Length = 417 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 147 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 200 Query: 113 IVRE 116 + R+ Sbjct: 201 LARK 204 >gi|269798082|ref|YP_003311982.1| ATPase AAA [Veillonella parvula DSM 2008] gi|269094711|gb|ACZ24702.1| ATPase AAA-2 domain protein [Veillonella parvula DSM 2008] Length = 815 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ +A AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|42518369|ref|NP_964299.1| cell division protein FtsH-like protein [Lactobacillus johnsonii NCC 533] gi|41582654|gb|AAS08265.1| cell division protein FtsH-like protein [Lactobacillus johnsonii NCC 533] Length = 708 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|300859209|ref|YP_003784192.1| cell division protein [Corynebacterium pseudotuberculosis FRC41] gi|300686663|gb|ADK29585.1| cell division protein [Corynebacterium pseudotuberculosis FRC41] gi|302206898|gb|ADL11240.1| Cell division protease ftsH-like protein [Corynebacterium pseudotuberculosis C231] gi|302331465|gb|ADL21659.1| Cell division protein [Corynebacterium pseudotuberculosis 1002] gi|308277152|gb|ADO27051.1| Cell division protein [Corynebacterium pseudotuberculosis I19] Length = 667 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L + R +QL A + P+ +LL GP G GKT ++R +A AG PF + + F E+ Sbjct: 182 LEDPSRYEQLGAKI-----PRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM- 235 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 236 FVGVGASR-VRDL 247 >gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17] gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17] Length = 690 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 277 >gi|282880908|ref|ZP_06289599.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS 5C-B1] gi|281305131|gb|EFA97200.1| ATP-dependent metallopeptidase HflB [Prevotella timonensis CRIS 5C-B1] Length = 673 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ AK+ V L+N R L + PK LLVGP G GKT +++ +A Sbjct: 202 VAGQAGAKQEVQEIVDFLKNPHRYTDLGGKI-----PKGALLVGPPGTGKTLLAKAVAGE 256 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 AG PF + + F E+ +VG + +RDL Sbjct: 257 AGVPFFSMSGSDFVEM-FVGVGASR-VRDL 284 >gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] Length = 974 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|206901548|ref|YP_002250585.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12] gi|206740651|gb|ACI19709.1| cell division protein FtsH [Dictyoglomus thermophilum H-6-12] Length = 607 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ILLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL A Sbjct: 189 IPRGILLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM-FVGVGAAR-VRDLFTQA 245 >gi|170062572|ref|XP_001866728.1| aaa atpase [Culex quinquefasciatus] gi|167880462|gb|EDS43845.1| aaa atpase [Culex quinquefasciatus] Length = 394 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ AR AG FI ++V T+ Y Sbjct: 127 PKGVLLYGPPGCGKTLIAKATAREAGMRFINLDVAMLTDKWY 168 >gi|146338276|ref|YP_001203324.1| cell division protein FtsH [Bradyrhizobium sp. ORS278] gi|146191082|emb|CAL75087.1| Cell division protein FtsH; ATP-dependent zinc-metallo protease [Bradyrhizobium sp. ORS278] Length = 657 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 205 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 261 >gi|37523858|ref|NP_927235.1| hypothetical protein glr4289 [Gloeobacter violaceus PCC 7421] gi|35214864|dbj|BAC92230.1| glr4289 [Gloeobacter violaceus PCC 7421] Length = 504 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 15/101 (14%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 ++EL R++ + DA R R+ LP PK +L++G G GK+ I++ Sbjct: 235 LAELKRWLTQRSDA-------FTERARQYGLP-------QPKGMLILGVPGCGKSLIAKT 280 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 ARL G P +++++ + + VGR+ E +R+ + VA +I Sbjct: 281 TARLWGLPLLRLDIGRVYDGSMVGRS-EANLRNALRVAESI 320 >gi|282897599|ref|ZP_06305599.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281197522|gb|EFA72418.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 635 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 272 >gi|268318838|ref|YP_003292494.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785] gi|262397213|emb|CAX66227.1| ATP-dependent metalloprotease FtsH [Lactobacillus johnsonii FI9785] Length = 708 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|254294755|ref|YP_003060778.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814] gi|254043286|gb|ACT60081.1| ATP-dependent metalloprotease FtsH [Hirschia baltica ATCC 49814] Length = 640 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPKGALLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|188589992|ref|YP_001919612.1| putative Cell division protease FtsH homolog [Clostridium botulinum E3 str. Alaska E43] gi|251780453|ref|ZP_04823373.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500273|gb|ACD53409.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E3 str. Alaska E43] gi|243084768|gb|EES50658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 601 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVG 234 >gi|73981824|ref|XP_540351.2| PREDICTED: similar to fidgetin-like 1 [Canis familiaris] Length = 689 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 449 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 504 >gi|37522828|ref|NP_926205.1| hypothetical protein gll3259 [Gloeobacter violaceus PCC 7421] gi|35213830|dbj|BAC91200.1| gll3259 [Gloeobacter violaceus PCC 7421] Length = 507 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 15/101 (14%) Query: 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRR 72 ++EL R++ + DA R R+ LP PK +L++G G GK+ I++ Sbjct: 238 LAELKRWLTQRSDA-------FTERARQYGLP-------QPKGLLILGVPGCGKSLIAKT 283 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 ARL G P +++++ + + VGR+ E +R+ + VA +I Sbjct: 284 TARLWGLPLLRLDIGRVYDGSMVGRS-EANLRNALRVAESI 323 >gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574] gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574] Length = 690 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 277 >gi|300725894|ref|ZP_07059357.1| cell division protein FtsH [Prevotella bryantii B14] gi|299776831|gb|EFI73378.1| cell division protein FtsH [Prevotella bryantii B14] Length = 695 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 232 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDL 284 >gi|300114321|ref|YP_003760896.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] gi|299540258|gb|ADJ28575.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] Length = 644 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LL GP G GKT ++R +A A PF + ++F E+ +VG + RDL + A Sbjct: 206 MPKGVLLAGPPGTGKTLLARAIAGEARVPFFNISGSEFIEL-FVGVGAAR-ARDLFEQA 262 >gi|299117317|emb|CBN75277.1| conserved unknown protein [Ectocarpus siliculosus] Length = 418 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP+G GKT ++R +A A PF + F E+ VGR + +RDL Sbjct: 224 LPRGVLLSGPSGTGKTLLARAMAAEARVPFFSCSASDFVEM-LVGRGAAR-VRDL 276 >gi|282850309|ref|ZP_06259688.1| negative regulator of genetic competence ClpC/MecB [Veillonella parvula ATCC 17745] gi|282579802|gb|EFB85206.1| negative regulator of genetic competence ClpC/MecB [Veillonella parvula ATCC 17745] Length = 815 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ +A AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277] Length = 642 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|229847494|ref|ZP_04467591.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1] gi|229809635|gb|EEP45362.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1] Length = 480 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|300362402|ref|ZP_07058578.1| cell division protein FtsH [Lactobacillus gasseri JV-V03] gi|300353393|gb|EFJ69265.1| cell division protein FtsH [Lactobacillus gasseri JV-V03] Length = 708 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|303272557|ref|XP_003055640.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463614|gb|EEH60892.1| predicted protein [Micromonas pusilla CCMP1545] Length = 391 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 ++P +LL GP G GKT ++R LA A PF V T+F E+ +VG +I Sbjct: 42 VIPAGVLLCGPPGTGKTLLARCLAGEANVPFFAVAGTEFMEM-FVGVGAARI 92 >gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] Length = 977 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 255 >gi|83645152|ref|YP_433587.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis KCTC 2396] gi|83633195|gb|ABC29162.1| ATPase with chaperone activity, ATP-binding subunit [Hahella chejuensis KCTC 2396] Length = 759 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68 R + L + GQ A A+ A++ A L+ E P+ + L GPTGVGKT Sbjct: 452 RNLQRNLKMVVFGQDPAIEALVTAIKLSR------AGLKSEGKPEGSFLFAGPTGVGKTE 505 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA++ G ++ +++++ E V R Sbjct: 506 VTRQLAKILGVELVRFDMSEYMERHTVSR 534 >gi|50545691|ref|XP_500384.1| YALI0B01386p [Yarrowia lipolytica] gi|49646250|emb|CAG82601.1| YALI0B01386p [Yarrowia lipolytica] Length = 708 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A A PF V ++F E+ YVG ++ +R+L + A Sbjct: 258 LPKGVLLTGPPGTGKTLLARAVAGEADVPFYFVSGSEFDEM-YVGVGAKR-VRELFEKA 314 >gi|85108906|ref|XP_962658.1| ATPase family AAA domain-containing protein 1 [Neurospora crassa OR74A] gi|28924269|gb|EAA33422.1| ATPase family AAA domain-containing protein 1 [Neurospora crassa OR74A] Length = 414 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +++R + +A+ Sbjct: 153 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLALK 210 Query: 113 I 113 + Sbjct: 211 L 211 >gi|317010654|gb|ADU84401.1| cell division protein [Helicobacter pylori SouthAfrica7] Length = 632 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|294793817|ref|ZP_06758954.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. 3_1_44] gi|294455387|gb|EFG23759.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp. 3_1_44] Length = 815 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ +A AVA A+R R R A L+D P + L +GPTGVGKT ++R L Sbjct: 505 ELHKRVVGQDEAVTAVAKAVR-RAR-----AGLKDPKRPIGSFLFLGPTGVGKTELARAL 558 Query: 74 A-RLAG--APFIKVEVTKFTEIGYVGRNV 99 A L G + I+++++++ E V R V Sbjct: 559 ASSLFGDESAMIRLDMSEYMEKHTVSRLV 587 >gi|296121876|ref|YP_003629654.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] gi|296014216|gb|ADG67455.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] Length = 650 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL+GP G GKT ++R A AG PF + ++F ++ +VG + +RDL Sbjct: 229 IPKGVLLMGPPGTGKTLLARATAGEAGVPFYSINGSEFIQM-FVGVGASR-VRDL 281 >gi|303244707|ref|ZP_07331038.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] gi|302484921|gb|EFL47854.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] Length = 372 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 46 DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG-YVGRNVEQIIR 104 +L E PKNIL GP G GKT ++R LA P ++ T+ IG +VG +Q I+ Sbjct: 148 ELFGEWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATEL--IGEHVGDGSKQ-IQ 204 Query: 105 DLVDVAIN 112 DL + A+N Sbjct: 205 DLYNKALN 212 >gi|302838875|ref|XP_002950995.1| hypothetical protein VOLCADRAFT_35780 [Volvox carteri f. nagariensis] gi|300263690|gb|EFJ47889.1| hypothetical protein VOLCADRAFT_35780 [Volvox carteri f. nagariensis] Length = 135 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK +LLVGP G GKT ++R +A +G FI +F E+ Y+G + +RDL + A + Sbjct: 37 PKGVLLVGPPGNGKTLMARAVAGESGVAFISSSAAEFIEM-YMGLGAAR-VRDLFNTARS 94 Query: 113 IV 114 + Sbjct: 95 VA 96 >gi|297288317|ref|XP_002803322.1| PREDICTED: fidgetin-like protein 1-like isoform 6 [Macaca mulatta] gi|297288319|ref|XP_002803323.1| PREDICTED: fidgetin-like protein 1-like isoform 7 [Macaca mulatta] Length = 563 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378 >gi|187935018|ref|YP_001884419.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str. Eklund 17B] gi|187723171|gb|ACD24392.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B str. Eklund 17B] Length = 601 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LLVGP G GKT +++ ++ AG PF + + F E+ +VG Sbjct: 191 IPKGVLLVGPPGTGKTLLAKAISGEAGVPFFSISGSDFVEM-FVG 234 >gi|188584568|ref|YP_001928013.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001] gi|179348066|gb|ACB83478.1| ATP-dependent metalloprotease FtsH [Methylobacterium populi BJ001] Length = 642 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 437 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A A PF T+F E+ +VG + IR+L D A Sbjct: 94 IPAGVLLCGPPGTGKTLLARCVAGEANVPFFSCAGTEFMEM-FVGVGAAR-IRNLFDQA 150 >gi|154253239|ref|YP_001414063.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum lavamentivorans DS-1] gi|154157189|gb|ABS64406.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Parvibaculum lavamentivorans DS-1] Length = 794 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68 +++ +EL R + GQ A A+A +++ A LR+ P L GPTGVGKT Sbjct: 458 KDLDTELKRVVFGQNAAIDALAASIKLAR------AGLREAEKPIGCYLFSGPTGVGKTE 511 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LA + G ++ +++++ E GYVG + ++ D VD Sbjct: 512 VARQLASVLGVEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVD 562 >gi|116628950|ref|YP_814122.1| ATP-dependent Zn protease [Lactobacillus gasseri ATCC 33323] gi|238853549|ref|ZP_04643921.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4] gi|282852628|ref|ZP_06261970.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1] gi|116094532|gb|ABJ59684.1| membrane protease FtsH catalytic subunit [Lactobacillus gasseri ATCC 33323] gi|238833845|gb|EEQ26110.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 202-4] gi|282556370|gb|EFB61990.1| ATP-dependent metallopeptidase HflB [Lactobacillus gasseri 224-1] Length = 708 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPAGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 280 >gi|153952359|ref|YP_001397772.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] gi|152939805|gb|ABS44546.1| cell division protein FtsH [Campylobacter jejuni subsp. doylei 269.97] Length = 645 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|71031686|ref|XP_765485.1| AAA family ATPase [Theileria parva strain Muguga] gi|68352441|gb|EAN33202.1| AAA family ATPase, putative [Theileria parva] Length = 637 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 PK ILL GP G GKT I++ +A ++ A F ++ + T Y G + E II+ L VA+ Sbjct: 384 PKGILLFGPPGTGKTTIAKWIANVSNATFFEISPSSITSKFY-GES-ESIIKTLFKVAL 440 >gi|289618354|emb|CBI55078.1| unnamed protein product [Sordaria macrospora] Length = 414 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +++R + +A+ Sbjct: 153 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLALK 210 Query: 113 I 113 + Sbjct: 211 L 211 >gi|295836295|ref|ZP_06823228.1| cell division protein FtsH [Streptomyces sp. SPB74] gi|197697339|gb|EDY44272.1| cell division protein FtsH [Streptomyces sp. SPB74] Length = 651 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 241 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 300 Query: 110 AINIV 114 A +IV Sbjct: 301 APSIV 305 >gi|158340876|ref|YP_001522044.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|310943110|sp|A8ZNZ4|FTSH_ACAM1 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|158311117|gb|ABW32730.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 655 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 208 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSEFIEL-FVGIGAAR-VRDLFEQA 264 >gi|109947710|ref|YP_664938.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str. Sheeba] gi|109714931|emb|CAJ99939.1| membrane bound zinc metallopeptidase [Helicobacter acinonychis str. Sheeba] Length = 635 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 205 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 261 >gi|92118966|ref|YP_578695.1| ATP-dependent metalloprotease FtsH [Nitrobacter hamburgensis X14] gi|91801860|gb|ABE64235.1| membrane protease FtsH catalytic subunit [Nitrobacter hamburgensis X14] Length = 638 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|323450958|gb|EGB06837.1| hypothetical protein AURANDRAFT_59175 [Aureococcus anophagefferens] Length = 479 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P+ +LL GP G GKT ++R +A AG PFI ++F E+ +VG +I D N Sbjct: 64 PRGVLLEGPPGTGKTLLARAVAGEAGVPFISASGSEFVEM-FVGVGASRIRSLFADAKKN 122 >gi|320591014|gb|EFX03453.1| ATPase family aaa domain containing protein [Grosmannia clavigera kw1407] Length = 460 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N +++R + +A Sbjct: 140 PSGVLLYGPPGCGKTMLAKALAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 195 >gi|208434325|ref|YP_002265991.1| cell division protein [Helicobacter pylori G27] gi|208432254|gb|ACI27125.1| cell division protein [Helicobacter pylori G27] Length = 632 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|7671494|emb|CAB89335.1| FtsH-like protein Pftf precursor-like [Arabidopsis thaliana] Length = 687 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + RDL + A Sbjct: 255 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 311 >gi|2199518|gb|AAB66377.1| FtsH [Helicobacter pylori] Length = 632 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411] gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411] Length = 796 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFKQA 256 >gi|39938793|ref|NP_950559.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721902|dbj|BAD04392.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 422 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ LA PF V ++F E+ YVG + IRDL A Sbjct: 212 IPKGVLLEGPPGTGKTLLAKALANEVKIPFYAVSGSEFVEV-YVGVGASR-IRDLFQKA 268 >gi|329113826|ref|ZP_08242597.1| Cell division protease FtsH-like protein [Acetobacter pomorum DM001] gi|326696836|gb|EGE48506.1| Cell division protease FtsH-like protein [Acetobacter pomorum DM001] Length = 645 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|294494877|ref|YP_003541370.1| ATPase AAA [Methanohalophilus mahii DSM 5219] gi|292665876|gb|ADE35725.1| AAA ATPase central domain protein [Methanohalophilus mahii DSM 5219] Length = 428 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103 +LLVGP G GKT+++R L+ + PF++V+++ T+ +G +N++++ Sbjct: 211 VLLVGPPGTGKTSVARALSEMLSIPFVEVKLSMITDQYLGETAKNIDRVF 260 >gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC 43734] gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC 43734] Length = 796 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 200 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFKQA 256 >gi|298527838|ref|ZP_07015242.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira thiodismutans ASO3-1] gi|298511490|gb|EFI35392.1| ATP-dependent metalloprotease FtsH [Desulfonatronospira thiodismutans ASO3-1] Length = 644 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 237 >gi|145641634|ref|ZP_01797211.1| RNA polymerase sigma factor [Haemophilus influenzae R3021] gi|145273681|gb|EDK13550.1| RNA polymerase sigma factor [Haemophilus influenzae 22.4-21] Length = 416 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|21740068|emb|CAD39050.1| hypothetical protein [Homo sapiens] Length = 563 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378 >gi|21672968|ref|NP_661033.1| cell division protein FtsH [Chlorobium tepidum TLS] gi|21646027|gb|AAM71375.1| cell division protein FtsH [Chlorobium tepidum TLS] Length = 706 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDLFKSA 285 >gi|148258082|ref|YP_001242667.1| cell division protein FtsH [Bradyrhizobium sp. BTAi1] gi|146410255|gb|ABQ38761.1| membrane protease FtsH catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 638 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|46110102|ref|XP_382109.1| hypothetical protein FG01933.1 [Gibberella zeae PH-1] Length = 395 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +I+R + +A Sbjct: 147 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KIVRAVFSLA 202 >gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis] Length = 694 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LLVGP G GKT ++R +A A PF + ++F E+ YVG + +R+L A Sbjct: 183 PSGVLLVGPPGTGKTLLARAVAGEADVPFFSIAASEFVEL-YVGMGAMR-VRELFATA 238 >gi|270290205|ref|ZP_06196431.1| cell division protease FtsH [Pediococcus acidilactici 7_4] gi|304385526|ref|ZP_07367870.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284] gi|270281742|gb|EFA27574.1| cell division protease FtsH [Pediococcus acidilactici 7_4] gi|304328030|gb|EFL95252.1| cell division protein FtsH [Pediococcus acidilactici DSM 20284] Length = 694 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 276 >gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] Length = 910 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 205 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFTQA 261 >gi|217031605|ref|ZP_03437110.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128] gi|216946805|gb|EEC25401.1| hypothetical protein HPB128_21g163 [Helicobacter pylori B128] Length = 603 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 173 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 229 >gi|254455364|ref|ZP_05068793.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211] gi|207082366|gb|EDZ59792.1| ATP-dependent Zn protease [Candidatus Pelagibacter sp. HTCC7211] Length = 614 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +P+ LLVGP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + Sbjct: 166 IPRGALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFE 220 >gi|167761264|ref|ZP_02433391.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704] gi|167660930|gb|EDS05060.1| hypothetical protein CLOSCI_03669 [Clostridium scindens ATCC 35704] Length = 648 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 174 VAGQDEAKESLQEVVDFLHNPGKYTSVGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 229 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 260 >gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R] gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R] Length = 853 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 253 >gi|116493273|ref|YP_805008.1| FtsH-2 peptidase [Pediococcus pentosaceus ATCC 25745] gi|116103423|gb|ABJ68566.1| membrane protease FtsH catalytic subunit [Pediococcus pentosaceus ATCC 25745] Length = 693 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL D A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFDQA 276 >gi|115387825|ref|XP_001211418.1| ATPase family AAA domain-containing protein 1 [Aspergillus terreus NIH2624] gi|114195502|gb|EAU37202.1| ATPase family AAA domain-containing protein 1 [Aspergillus terreus NIH2624] Length = 422 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 150 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 203 Query: 113 IVRE 116 + R+ Sbjct: 204 LARK 207 >gi|145358053|ref|NP_568311.2| FTSH6 (FTSH PROTEASE 6); ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] gi|122231638|sp|Q1PDW5|FTSH6_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; Short=AtFTSH6; Flags: Precursor gi|91806862|gb|ABE66158.1| FtsH protease [Arabidopsis thaliana] gi|332004753|gb|AED92136.1| cell division protease ftsH-6 [Arabidopsis thaliana] Length = 688 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + RDL + A Sbjct: 256 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 312 >gi|300780435|ref|ZP_07090291.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030] gi|300534545|gb|EFK55604.1| cell division protein FtsH [Corynebacterium genitalium ATCC 33030] Length = 865 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 198 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 254 >gi|225027803|ref|ZP_03716995.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353] gi|224954853|gb|EEG36062.1| hypothetical protein EUBHAL_02062 [Eubacterium hallii DSM 3353] Length = 618 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++LVGP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 200 IPKGVILVGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEDA 256 >gi|224437409|ref|ZP_03658378.1| ATP-dependent Clp protease ClpA [Helicobacter cinaedi CCUG 18818] gi|313143871|ref|ZP_07806064.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818] gi|313128902|gb|EFR46519.1| chaperone protein clpB [Helicobacter cinaedi CCUG 18818] Length = 861 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 12/92 (13%) Query: 11 EIVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 563 DIESELTKSVVGQESAIKAIARAIKRNK-------AGLSDANRPIGSFLFLGPTGVGKTQ 615 Query: 69 ISRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA ++++++++ E V R Sbjct: 616 CAKTLAEFLFDNAKSLVRIDMSEYMEKHAVSR 647 >gi|198275273|ref|ZP_03207804.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135] gi|198271856|gb|EDY96126.1| hypothetical protein BACPLE_01432 [Bacteroides plebeius DSM 17135] Length = 738 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ +A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 453 IYGQDEAIRQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 506 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 I+ +++++ E GY+G ++ D + N V Sbjct: 507 ISLIRFDMSEYMEKHTIAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 553 >gi|170750724|ref|YP_001756984.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans JCM 2831] gi|170657246|gb|ACB26301.1| ATP-dependent metalloprotease FtsH [Methylobacterium radiotolerans JCM 2831] Length = 640 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2] gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2] Length = 660 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFEQA 272 >gi|145354425|ref|XP_001421485.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581722|gb|ABO99778.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 290 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT I R +A GA F + + T ++G E+++R L VA Sbjct: 42 VPKGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVAR 99 Query: 112 NI 113 ++ Sbjct: 100 HL 101 >gi|119486971|ref|XP_001262405.1| membrane-spanning ATPase, putative [Neosartorya fischeri NRRL 181] gi|119410562|gb|EAW20508.1| membrane-spanning ATPase, putative [Neosartorya fischeri NRRL 181] Length = 419 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 587 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP G GKT ++R +A AG PF + + F E+ +VG ++ Sbjct: 184 IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFALSGSSFVEL-FVGMGASRV 233 >gi|325264718|ref|ZP_08131447.1| cell division protein FtsH [Clostridium sp. D5] gi|324030010|gb|EGB91296.1| cell division protein FtsH [Clostridium sp. D5] Length = 696 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 229 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 283 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ YVG + +RDL Sbjct: 284 AKVPFFSLSGSAFVEM-YVGVGASR-VRDL 311 >gi|299139539|ref|ZP_07032713.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8] gi|298598467|gb|EFI54631.1| ATP-dependent metalloprotease FtsH [Acidobacterium sp. MP5ACTX8] Length = 637 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 188 IPKGVLMVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 242 >gi|167584242|ref|ZP_02376630.1| Peptidase M41, FtsH [Burkholderia ubonensis Bu] Length = 565 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|152980704|ref|YP_001353927.1| peptidase M41 (cell division protein) [Janthinobacterium sp. Marseille] gi|151280781|gb|ABR89191.1| peptidase M41 (cell division protein) [Janthinobacterium sp. Marseille] Length = 627 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + P+ +L+VGP G GKT ++R +A A PF + + F E+ Sbjct: 176 LRDPTRFQKLGGRI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 229 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ D A Sbjct: 230 FVGVGASR-VRDMFDNA 245 >gi|114613357|ref|XP_001153794.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 563 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 323 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 378 >gi|86748941|ref|YP_485437.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris HaA2] gi|86571969|gb|ABD06526.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas palustris HaA2] Length = 638 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|15611424|ref|NP_223075.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99] gi|6647534|sp|Q9ZM66|FTSH_HELPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|4154882|gb|AAD05932.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99] Length = 632 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|86150355|ref|ZP_01068581.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596161|ref|ZP_01099398.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 84-25] gi|218562730|ref|YP_002344509.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839180|gb|EAQ56443.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191002|gb|EAQ94974.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 84-25] gi|112360436|emb|CAL35233.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926536|gb|EFV05917.1| Membrane bound zinc metallopeptidase FtsH [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929883|gb|EFV09043.1| cell division protease FtsH [Campylobacter jejuni subsp. jejuni 305] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|330814166|ref|YP_004358405.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus Pelagibacter sp. IMCC9063] gi|327487261|gb|AEA81666.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus Pelagibacter sp. IMCC9063] Length = 756 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 18/99 (18%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 ++I L R I GQ A A+A +++ R + LRD N L GPTGVGKT Sbjct: 452 KDIEKNLKRIIYGQDHAIEALASSIK--LSR----SGLRDSNKTIGNYLFSGPTGVGKTE 505 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96 ++++LA+ G I+ ++++++E GYVG Sbjct: 506 LAKQLAKTLGVELIRFDMSEYSERHTISKLIGAPPGYVG 544 >gi|325114908|emb|CBZ50465.1| putative ATPase, AAA family domain-containing protein [Neospora caninum Liverpool] Length = 462 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P+ ILL GPTG GKT ++R +A + PF+ + F E+ YVG+ + +R L + A Sbjct: 75 PRGILLEGPTGTGKTLLARAVAGESSVPFLSISGGSFVEL-YVGQGAAR-VRALFEAA 130 >gi|325288402|ref|YP_004264583.1| membrane protease FtsH catalytic subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963803|gb|ADY54582.1| membrane protease FtsH catalytic subunit [Syntrophobotulus glycolicus DSM 8271] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ ++ AG PF + + F E+ +VG + +RDL + A Sbjct: 188 IPKGVLLFGPPGTGKTLLAKAVSGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 244 >gi|320335152|ref|YP_004171863.1| ATPase AAA-2 domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319756441|gb|ADV68198.1| ATPase AAA-2 domain protein [Deinococcus maricopensis DSM 21211] Length = 753 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRR 72 ++L + GQ +A R VA A++ A LRD P+ L GPTGVGKT ++R Sbjct: 448 TDLQARVFGQDEAVRQVAGAVKLAR------AGLRDPRRPQGAFLFAGPTGVGKTELARA 501 Query: 73 LARLAGAPFIKVEVTKFTEIGYVGR 97 LA + G I+ +++++ E V R Sbjct: 502 LADVLGVNLIRFDMSEYGEAHTVSR 526 >gi|317012217|gb|ADU82825.1| cell division protease FtsH [Helicobacter pylori Lithuania75] Length = 632 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|308182547|ref|YP_003926674.1| cell division protein [Helicobacter pylori PeCan4] gi|308064732|gb|ADO06624.1| cell division protein [Helicobacter pylori PeCan4] Length = 632 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|300120406|emb|CBK19960.2| unnamed protein product [Blastocystis hominis] Length = 408 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK ILL GP G GKT ++R A+ A FIK+ T + ++G +I+RD +A Sbjct: 183 PKGILLYGPPGTGKTLLARACAKQTDAAFIKLSATVLDQ-AHIGEG-SRIVRDCFSLAKK 240 Query: 113 IVRESR 118 + E + Sbjct: 241 KIEEKQ 246 >gi|294155986|ref|YP_003560370.1| cell division protein FtsH [Mycoplasma crocodyli MP145] gi|291600426|gb|ADE19922.1| cell division protein FtsH [Mycoplasma crocodyli MP145] Length = 669 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105 MPK ILL GP G GKT +++ A A PF + + F E+ YVG + V Q+I + Sbjct: 230 MPKGILLGGPPGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRVRQVITE 285 >gi|283954681|ref|ZP_06372199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414] gi|283793873|gb|EFC32624.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 414] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|10435339|dbj|BAB14567.1| unnamed protein product [Homo sapiens] Length = 254 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 14 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 69 >gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032] gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Corynebacterium glutamicum ATCC 13032] gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE) [Corynebacterium glutamicum ATCC 13032] Length = 853 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 197 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 253 >gi|332004754|gb|AED92137.1| cell division protease ftsH-6 [Arabidopsis thaliana] Length = 709 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + ++F E+ +VG + RDL + A Sbjct: 254 IPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-ARDLFNKA 310 >gi|317009024|gb|ADU79604.1| cell division protein (ftsH) [Helicobacter pylori India7] Length = 632 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|307637074|gb|ADN79524.1| cell division protein [Helicobacter pylori 908] gi|325995665|gb|ADZ51070.1| Cell division protein [Helicobacter pylori 2018] gi|325997261|gb|ADZ49469.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017] Length = 632 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|283956514|ref|ZP_06373994.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 1336] gi|283792234|gb|EFC31023.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 1336] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|285016905|ref|YP_003374616.1| ATPase AAA [Xanthomonas albilineans GPE PC73] gi|283472123|emb|CBA14630.1| hypothetical atpase of the aaa+ class protein [Xanthomonas albilineans] Length = 807 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 15/97 (15%) Query: 33 ALRNRWRRQQLPADLRDELM-------------PKNILLVGPTGVGKTAISRRLARLAGA 79 A++ W LP DE++ PK ILL GP G GKT I+R+LA+ AG Sbjct: 311 AVQRHWTDVALPDACLDEILKLVDLFVSGRAPAPKGILLHGPPGTGKTLIARKLAQHAGC 370 Query: 80 PFIKVEVT--KFTEIGYVGRNVEQIIRDLVDVAINIV 114 + V K +G G V+ I + D A I+ Sbjct: 371 HVEALGVADLKAAHVGNTGPKVQAIWQRCRDNAPAIL 407 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P+ IL+ GP G GKT ++R LA +G FI + + GY+G++ +++ Sbjct: 590 VPRGILMSGPPGTGKTQVARILANQSGLAFIALTSADL-KAGYLGQSGQRV 639 >gi|258577939|ref|XP_002543151.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704] gi|237903417|gb|EEP77818.1| hypothetical protein UREG_02667 [Uncinocarpus reesii 1704] Length = 410 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 137 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 190 Query: 113 IVRE 116 + R+ Sbjct: 191 LARK 194 >gi|86150719|ref|ZP_01068935.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 260.94] gi|157415377|ref|YP_001482633.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 81116] gi|315124593|ref|YP_004066597.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841889|gb|EAQ59135.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 260.94] gi|157386341|gb|ABV52656.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 81116] gi|307748018|gb|ADN91288.1| Cell division protease ftsH-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315018315|gb|ADT66408.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315932256|gb|EFV11199.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 327] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|86152928|ref|ZP_01071133.1| putative Cell division protein FtsH homolog [Campylobacter jejuni subsp. jejuni HB93-13] gi|205355861|ref|ZP_03222630.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni CG8421] gi|85843813|gb|EAQ61023.1| putative Cell division protein FtsH homolog [Campylobacter jejuni subsp. jejuni HB93-13] gi|205346295|gb|EDZ32929.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni CG8421] gi|284926344|gb|ADC28696.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni IA3902] Length = 645 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|115526687|ref|YP_783598.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris BisA53] gi|115520634|gb|ABJ08618.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas palustris BisA53] Length = 638 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|329114969|ref|ZP_08243724.1| ClpA-like protein [Acetobacter pomorum DM001] gi|326695412|gb|EGE47098.1| ClpA-like protein [Acetobacter pomorum DM001] Length = 781 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 22/115 (19%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 +E++ L+R + GQ A A++ A++ A LRD P N L GPTGV Sbjct: 458 KEVLRSLERDLKGMVFGQDQAIDALSAAIKLAR------AGLRDAEKPIGNYLFSGPTGV 511 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 GKT ++R+LA G ++ +++++ E GYVG + ++ D +D Sbjct: 512 GKTEVARQLATALGIELVRFDMSEYMERHSISRLLGAPPGYVGFDQGGLLTDAID 566 >gi|317013821|gb|ADU81257.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori Gambia94/24] Length = 632 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|315281718|ref|ZP_07870283.1| negative regulator of genetic competence ClpC/MecB [Listeria marthii FSL S4-120] gi|313614643|gb|EFR88222.1| negative regulator of genetic competence ClpC/MecB [Listeria marthii FSL S4-120] Length = 585 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 281 KNLESNLTGKVIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTE 334 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 335 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 377 >gi|224045854|ref|XP_002190590.1| PREDICTED: fidgetin-like 1 [Taeniopygia guttata] Length = 689 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 449 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 504 >gi|217033329|ref|ZP_03438760.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10] gi|216944270|gb|EEC23695.1| hypothetical protein HP9810_9g82 [Helicobacter pylori 98-10] Length = 632 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|210134573|ref|YP_002301012.1| cell division protein FtsH [Helicobacter pylori P12] gi|210132541|gb|ACJ07532.1| cell division protein FtsH [Helicobacter pylori P12] Length = 632 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|57237998|ref|YP_179247.1| cell division protein FtsH [Campylobacter jejuni RM1221] gi|57166802|gb|AAW35581.1| cell division protein FtsH [Campylobacter jejuni RM1221] gi|315058557|gb|ADT72886.1| Cell division protein FtsH [Campylobacter jejuni subsp. jejuni S3] Length = 645 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|317471079|ref|ZP_07930452.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA] gi|316901447|gb|EFV23388.1| ATP-dependent metallopeptidase HflB [Anaerostipes sp. 3_2_56FAA] Length = 609 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT I++ +A A PF + + F E+ +VG + +RDL Sbjct: 195 IPKGVLLVGPPGTGKTLIAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 247 >gi|306821413|ref|ZP_07455018.1| cell division protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550535|gb|EFM38521.1| cell division protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 678 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +L GP G GKT ++R +A A PF KV + F E+ YVG + +R+L A Sbjct: 232 LPNGVLFYGPPGTGKTLMARAIAGEASVPFYKVNGSDFVEL-YVGLGARR-VRNLYKTA 288 >gi|301059211|ref|ZP_07200149.1| cell division protease FtsH [delta proteobacterium NaphS2] gi|300446701|gb|EFK10528.1| cell division protease FtsH [delta proteobacterium NaphS2] Length = 630 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 183 IPKGVLLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFN 237 >gi|254779068|ref|YP_003057173.1| ATP-dependent zinc-metallo protease; putative signal peptide [Helicobacter pylori B38] gi|254000979|emb|CAX28923.1| ATP-dependent zinc-metallo protease; putative signal peptide [Helicobacter pylori B38] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|254386473|ref|ZP_05001776.1| clp-family ATP-binding protease [Streptomyces sp. Mg1] gi|194345321|gb|EDX26287.1| clp-family ATP-binding protease [Streptomyces sp. Mg1] Length = 841 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL R +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 495 FKLTEEESSRLLRMEDELHRRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 591 >gi|114327774|ref|YP_744931.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1] gi|114315948|gb|ABI62008.1| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1] Length = 642 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 189 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243 >gi|28212045|ref|NP_782989.1| cell division protein ftsH [Clostridium tetani E88] gi|28204488|gb|AAO36926.1| cell division protein ftsH [Clostridium tetani E88] Length = 624 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 173 VAGQEEAKESLMEIVDFLHNSDKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 227 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 228 AKVPFFSISGSGFVEM-FVGMGAAR-VRDLFEQA 259 >gi|83854838|ref|ZP_00948368.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter sp. NAS-14.1] gi|83941361|ref|ZP_00953823.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter sp. EE-36] gi|83842681|gb|EAP81848.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter sp. NAS-14.1] gi|83847181|gb|EAP85056.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Sulfitobacter sp. EE-36] Length = 773 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLEASLKRVVFGQDKAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|91978602|ref|YP_571261.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris BisB5] gi|91685058|gb|ABE41360.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas palustris BisB5] Length = 638 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|315638816|ref|ZP_07893988.1| cell division protein FtsH [Campylobacter upsaliensis JV21] gi|315481034|gb|EFU71666.1| cell division protein FtsH [Campylobacter upsaliensis JV21] Length = 640 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] Length = 579 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 15/98 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 MPK ++L GP G GKT +++ +A+ AG F + F ++ YVG + +RD Sbjct: 181 MPKGLILYGPPGTGKTLMAKAIAKEAGVAFFSASGSDFVQM-YVGVGASR-VRD------ 232 Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNTRE 149 I +E+R+ E+A I +E +DA +GK + N + Sbjct: 233 -IFKEARK---HEKAVIFIDE--IDA-IGKKRSQNAAQ 263 >gi|261837811|gb|ACX97577.1| metalloprotease [Helicobacter pylori 51] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|258645726|ref|ZP_05733195.1| cell division protein FtsH [Dialister invisus DSM 15470] gi|260403095|gb|EEW96642.1| cell division protein FtsH [Dialister invisus DSM 15470] Length = 628 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK +A L+N R + A + PK +LLVGP G GKT +++ +A Sbjct: 156 VAGEDEAKEELAEVVDFLKNPGRYTAIGAKI-----PKGVLLVGPPGTGKTLLAKAVAGE 210 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 211 AKVPFFSISGSDFVEM-FVGVGASR-VRDL 238 >gi|226355735|ref|YP_002785475.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus deserti VCD115] gi|226317725|gb|ACO45721.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus deserti VCD115] Length = 739 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73 +L + GQ +A AVA A++ A LRD+ P+ + L GPTGVGKT ++R L Sbjct: 450 DLKSRVFGQDEAVEAVASAVKLAR------AGLRDQTKPQGMFLFAGPTGVGKTELARAL 503 Query: 74 ARLAGAPFIKVEVTKFTEI-----------GYVGRNVEQIIRDLV 107 A G + +++++ E GYVG + ++ D V Sbjct: 504 AERLGIELTRFDMSEYQEAHTVARLIGAPPGYVGFDQGGLLTDAV 548 >gi|197287224|ref|YP_002153096.1| cell division protein [Proteus mirabilis HI4320] gi|227357081|ref|ZP_03841451.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906] gi|194684711|emb|CAR46686.1| cell division protein [Proteus mirabilis HI4320] gi|227162773|gb|EEI47736.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906] Length = 646 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LRDPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|308812043|ref|XP_003083329.1| aspartyl aminopeptidase (ISS) [Ostreococcus tauri] gi|116055209|emb|CAL57605.1| aspartyl aminopeptidase (ISS) [Ostreococcus tauri] Length = 1045 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 14/103 (13%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA- 110 +PK +LL GP G GKT I R +A GA F + + T ++G E+++R L VA Sbjct: 907 VPKGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVAR 964 Query: 111 -----------INIVRESRRDEVREQASINAEERILDALVGKT 142 I+ + +R+ + ++S + L L+G T Sbjct: 965 HLSPAVIFVDEIDSLLSARKSDGEHESSRRMKTEFLTLLIGAT 1007 >gi|108562803|ref|YP_627119.1| cell division protein [Helicobacter pylori HPAG1] gi|298736681|ref|YP_003729209.1| cell division protease FtsH [Helicobacter pylori B8] gi|107836576|gb|ABF84445.1| cell division protein [Helicobacter pylori HPAG1] gi|298355873|emb|CBI66745.1| cell division protease FtsH [Helicobacter pylori B8] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032] Length = 860 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 204 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 260 >gi|33865745|ref|NP_897304.1| cell division protein FtsH4 [Synechococcus sp. WH 8102] gi|33632915|emb|CAE07726.1| cell division protein FtsH4 [Synechococcus sp. WH 8102] Length = 615 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL Sbjct: 201 IPRGVLLVGPPGTGKTLLARAIAGEAEVPFFSMAASEFVEL-FVGVGASR-VRDL 253 >gi|332673225|gb|AEE70042.1| cell division protein FtsH [Helicobacter pylori 83] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|317177190|dbj|BAJ54979.1| cell division protein [Helicobacter pylori F16] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|310815409|ref|YP_003963373.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ketogulonicigenium vulgare Y25] gi|308754144|gb|ADO42073.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ketogulonicigenium vulgare Y25] Length = 769 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A+A A++ A LR+ P N L GPTGVGKT Sbjct: 458 KDLEPSLKRVVFGQDKAIEALASAIK------LARAGLREPEKPIGNYLFAGPTGVGKTE 511 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D +D Sbjct: 512 VAKQLADTLGVEMLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGID 562 >gi|305431847|ref|ZP_07401014.1| cell division protein FtsH [Campylobacter coli JV20] gi|304444931|gb|EFM37577.1| cell division protein FtsH [Campylobacter coli JV20] Length = 649 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 213 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 269 >gi|261839226|gb|ACX98991.1| cell division protein (ftsH) [Helicobacter pylori 52] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|167747338|ref|ZP_02419465.1| hypothetical protein ANACAC_02057 [Anaerostipes caccae DSM 14662] gi|167653316|gb|EDR97445.1| hypothetical protein ANACAC_02057 [Anaerostipes caccae DSM 14662] Length = 583 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT I++ +A A PF + + F E+ +VG + +RDL Sbjct: 169 IPKGVLLVGPPGTGKTLIAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 221 >gi|158337485|ref|YP_001518660.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] gi|158307726|gb|ABW29343.1| ATP-dependent metalloprotease FtsH-like protein [Acaryochloris marina MBIC11017] Length = 634 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL+GP G GKT +++ ++ AG PF + ++F E+ +VG + +RDL A Sbjct: 198 IPRGVLLIGPPGTGKTLLAKAISGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 254 >gi|281361487|ref|NP_649938.2| Rpt3R [Drosophila melanogaster] gi|54650682|gb|AAV36920.1| RE01104p [Drosophila melanogaster] gi|272476906|gb|AAF54440.2| Rpt3R [Drosophila melanogaster] Length = 405 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 159 IQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 213 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RDL +A Sbjct: 214 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 241 >gi|21064189|gb|AAM29324.1| AT28212p [Drosophila melanogaster] Length = 270 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 112 IQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 166 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RDL +A Sbjct: 167 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 194 >gi|1589774|gb|AAC44563.1| HpFtsH [Helicobacter pylori] Length = 632 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|27382257|ref|NP_773786.1| metalloprotease [Bradyrhizobium japonicum USDA 110] gi|5531227|emb|CAB51029.1| metalloprotease FtsH [Bradyrhizobium japonicum] gi|27355428|dbj|BAC52411.1| metalloprotease [Bradyrhizobium japonicum USDA 110] Length = 640 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|121612703|ref|YP_001000794.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 81-176] gi|167005709|ref|ZP_02271467.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 81-176] gi|87249221|gb|EAQ72182.1| cell division protein FtsH [Campylobacter jejuni subsp. jejuni 81-176] Length = 645 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|90426214|ref|YP_534584.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris BisB18] gi|90108228|gb|ABD90265.1| membrane protease FtsH catalytic subunit [Rhodopseudomonas palustris BisB18] Length = 638 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|110637033|ref|YP_677240.1| cell division protein, ATP-dependent metalloprotease [Cytophaga hutchinsonii ATCC 33406] gi|110279714|gb|ABG57900.1| membrane protease FtsH catalytic subunit [Cytophaga hutchinsonii ATCC 33406] Length = 692 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 236 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 292 >gi|308061729|gb|ADO03617.1| cell division protein (ftsH) [Helicobacter pylori Cuz20] gi|315586369|gb|ADU40750.1| cell division protein FtsH [Helicobacter pylori 35A] gi|317179228|dbj|BAJ57016.1| cell division protein [Helicobacter pylori F30] gi|317181720|dbj|BAJ59504.1| cell division protein [Helicobacter pylori F57] Length = 632 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|260582442|ref|ZP_05850233.1| cell division protein [Haemophilus influenzae NT127] gi|260094422|gb|EEW78319.1| cell division protein [Haemophilus influenzae NT127] Length = 456 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|163854236|ref|YP_001642279.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens PA1] gi|218533182|ref|YP_002423998.1| ATP-dependent metalloprotease FtsH [Methylobacterium chloromethanicum CM4] gi|240141697|ref|YP_002966177.1| cell division protease; ATP-dependent metalloprotease [Methylobacterium extorquens AM1] gi|254564205|ref|YP_003071300.1| cell division protease; ATP-dependent metalloprotease [Methylobacterium extorquens DM4] gi|163665841|gb|ABY33208.1| ATP-dependent metalloprotease FtsH [Methylobacterium extorquens PA1] gi|218525485|gb|ACK86070.1| ATP-dependent metalloprotease FtsH [Methylobacterium chloromethanicum CM4] gi|240011674|gb|ACS42900.1| cell division protease; ATP-dependent metalloprotease [Methylobacterium extorquens AM1] gi|254271483|emb|CAX27498.1| cell division protease; ATP-dependent metalloprotease [Methylobacterium extorquens DM4] Length = 642 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|116329654|ref|YP_799373.1| shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332539|ref|YP_802256.1| shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122279737|sp|Q04NM2|AROK_LEPBJ RecName: Full=Shikimate kinase; Short=SK gi|122282568|sp|Q04WV5|AROK_LEPBL RecName: Full=Shikimate kinase; Short=SK gi|116122547|gb|ABJ80440.1| Shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127406|gb|ABJ77498.1| Shikimate kinase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 179 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRD 105 M KN L+GP GVGK+ ISR+L+++ G P + ++ E+G G ++ + I++ Sbjct: 1 MRKNFALIGPRGVGKSKISRKLSKITGMPVVSTDMIAVYEMG--GISIPEFIQE 52 >gi|308184180|ref|YP_003928313.1| cell division protein (ftsH) [Helicobacter pylori SJM180] gi|308060100|gb|ADO01996.1| cell division protein (ftsH) [Helicobacter pylori SJM180] Length = 632 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|226329690|ref|ZP_03805208.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198] gi|225202876|gb|EEG85230.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198] Length = 424 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LRDPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|308799665|ref|XP_003074613.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri] gi|116000784|emb|CAL50464.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri] Length = 659 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P LLVGP G GKT ++R +A +G F V ++F E+ +VGR ++ Sbjct: 392 LPSGCLLVGPPGTGKTLLARAVAGESGVSFFPVAASEFVEL-FVGRGAARV 441 >gi|15645683|ref|NP_207860.1| cell division protein (ftsH) [Helicobacter pylori 26695] gi|2492508|sp|P71408|FTSH_HELPY RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|2314219|gb|AAD08115.1| cell division protein (ftsH) [Helicobacter pylori 26695] gi|317180726|dbj|BAJ58512.1| cell division protein [Helicobacter pylori F32] Length = 632 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|310657531|ref|YP_003935252.1| cell division protein ftsh [Clostridium sticklandii DSM 519] gi|308824309|emb|CBH20347.1| putative cell division protein ftsh [Clostridium sticklandii] Length = 645 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ++ GP G GKT +++ +A AG PF KV + F E+ YVG Sbjct: 232 LPNGVIFYGPPGTGKTLMAKAIAGEAGVPFFKVNGSDFVEL-YVG 275 >gi|297379599|gb|ADI34486.1| ATP-dependent metalloprotease FtsH [Helicobacter pylori v225d] Length = 632 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|258543659|ref|YP_003189092.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01] gi|256634737|dbj|BAI00713.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01] gi|256637793|dbj|BAI03762.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-03] gi|256640847|dbj|BAI06809.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-07] gi|256643902|dbj|BAI09857.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-22] gi|256646957|dbj|BAI12905.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-26] gi|256650010|dbj|BAI15951.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-32] gi|256653000|dbj|BAI18934.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656054|dbj|BAI21981.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-12] Length = 645 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|255264039|ref|ZP_05343381.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium sp. R2A62] gi|255106374|gb|EET49048.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thalassiobium sp. R2A62] Length = 774 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 459 RDLEKSLKRVVFGQDPAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 513 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 563 >gi|255038784|ref|YP_003089405.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM 18053] gi|254951540|gb|ACT96240.1| ATP-dependent metalloprotease FtsH [Dyadobacter fermentans DSM 18053] Length = 685 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 285 >gi|254461530|ref|ZP_05074946.1| cell division protein FtsH [Rhodobacterales bacterium HTCC2083] gi|206678119|gb|EDZ42606.1| cell division protein FtsH [Rhodobacteraceae bacterium HTCC2083] Length = 637 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|116872398|ref|YP_849179.1| ATP-dependent protease clpE [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741276|emb|CAK20398.1| ATP-dependent protease clpE [Listeria welshimeri serovar 6b str. SLCC5334] Length = 724 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 420 KNLESNLTGKVIGQEDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 473 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|84683911|ref|ZP_01011813.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Maritimibacter alkaliphilus HTCC2654] gi|84667664|gb|EAQ14132.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Rhodobacterales bacterium HTCC2654] Length = 873 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L + +IGQ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ +A Sbjct: 566 LHKRVIGQDQAVRAVANAVR-RAR-----AGLNDEARPLGSFLFLGPTGVGKTELTKAVA 619 Query: 75 RLA---GAPFIKVEVTKFTEIGYVGR 97 + +++++++F E V R Sbjct: 620 EFLFDDDSAMVRIDMSEFMEKHAVAR 645 >gi|57168002|ref|ZP_00367141.1| cell division protein FtsH [Campylobacter coli RM2228] gi|57020376|gb|EAL57045.1| cell division protein FtsH [Campylobacter coli RM2228] Length = 648 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 212 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 268 >gi|57506024|ref|ZP_00371947.1| cell division protein FtsH [Campylobacter upsaliensis RM3195] gi|57015632|gb|EAL52423.1| cell division protein FtsH [Campylobacter upsaliensis RM3195] Length = 640 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|315126398|ref|YP_004068401.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Pseudoalteromonas sp. SM9913] gi|315014912|gb|ADT68250.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Pseudoalteromonas sp. SM9913] Length = 753 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S +E + LDR + GQ + A+ A+R R + L +E P + L GPT Sbjct: 446 SDKETLKNLDRNLKMLVFGQDQSIDALTSAIR--LSR----SGLANENKPVGSFLFAGPT 499 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT ++++LA+ G FI+ +++++ E V R Sbjct: 500 GVGKTEVTKQLAKCMGVEFIRFDMSEYVERHAVSR 534 >gi|291060125|gb|ADD72860.1| putative Cell division protease FtsH-like protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 675 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF ++ + F E+ +VG + +RDL A Sbjct: 239 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEM-FVGIGASR-VRDLFKQA 295 >gi|237745684|ref|ZP_04576164.1| peptidase M41 [Oxalobacter formigenes HOxBLS] gi|229377035|gb|EEO27126.1| peptidase M41 [Oxalobacter formigenes HOxBLS] Length = 627 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGLLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFETA 245 >gi|226363749|ref|YP_002781531.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus opacus B4] gi|226242238|dbj|BAH52586.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus opacus B4] Length = 845 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AVA A+R R R A L+D P + + GP+GVGKT +++ L Sbjct: 511 ELHKRIIGQEDAVKAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELAKSL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|189219156|ref|YP_001939797.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4] gi|310943085|sp|B3DV46|FTSH1_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|189186014|gb|ACD83199.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4] Length = 636 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 31/163 (19%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R + L A + PK +LLVGP G GKT +++ +A A PF + ++F E+ Sbjct: 199 LKNPSRYRALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEM- 252 Query: 94 YVGRNVEQIIRDLVDVA------INIVRE----SRRDEVREQASINAEERILDALVGKT- 142 +VG + +RDL A I + E R+ VR Q + E+ L+ L+ + Sbjct: 253 FVGVGAAR-VRDLFGQAKSKAPCIVFIDELDAIGRQRGVRIQVGSDEHEQTLNQLLVEMD 311 Query: 143 -----------ATSNTREVF-RKKLRDGEISDKEIDIEVADTS 173 A +N E+ R LR G D+++ +++ D + Sbjct: 312 GFDPNEGIIVLAATNRPEILDRALLRPGRF-DRQVVVDLPDAN 353 >gi|188527188|ref|YP_001909875.1| cell division protein (ftsH) [Helicobacter pylori Shi470] gi|188143428|gb|ACD47845.1| cell division protein (ftsH) [Helicobacter pylori Shi470] gi|308063240|gb|ADO05127.1| cell division protein (ftsH) [Helicobacter pylori Sat464] Length = 632 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 202 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 258 >gi|184201574|ref|YP_001855781.1| cell division protein FtsH [Kocuria rhizophila DC2201] gi|183581804|dbj|BAG30275.1| ATP-dependent protease FtsH [Kocuria rhizophila DC2201] Length = 709 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 202 VPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQA 258 >gi|162146632|ref|YP_001601091.1| cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5] gi|161785207|emb|CAP54753.1| Cell division protein ftsH [Gluconacetobacter diazotrophicus PAl 5] Length = 646 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 191 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 245 >gi|145248756|ref|XP_001400717.1| ATPase family AAA domain-containing protein 1 [Aspergillus niger CBS 513.88] gi|134081386|emb|CAK41887.1| unnamed protein product [Aspergillus niger] Length = 415 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|121714425|ref|XP_001274823.1| membrane-spanning ATPase, putative [Aspergillus clavatus NRRL 1] gi|119402977|gb|EAW13397.1| membrane-spanning ATPase, putative [Aspergillus clavatus NRRL 1] Length = 419 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|111021395|ref|YP_704367.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus jostii RHA1] gi|110820925|gb|ABG96209.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus jostii RHA1] Length = 845 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AVA A+R R R A L+D P + + GP+GVGKT +++ L Sbjct: 511 ELHKRIIGQEDAVKAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELAKSL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|83592434|ref|YP_426186.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum ATCC 11170] gi|83575348|gb|ABC21899.1| membrane protease FtsH catalytic subunit [Rhodospirillum rubrum ATCC 11170] Length = 640 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 187 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241 >gi|50289553|ref|XP_447208.1| hypothetical protein [Candida glabrata CBS 138] gi|49526517|emb|CAG60141.1| unnamed protein product [Candida glabrata] Length = 750 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QL A + P+ +L GP G GKT +++ A AG PF+ V ++F E+ Sbjct: 297 LKNPAKYTQLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 350 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 351 FVGVGASR-VRDLFEQA 366 >gi|325995549|gb|ADZ50954.1| ClpB protein [Helicobacter pylori 2018] gi|325997145|gb|ADZ49353.1| ClpB protein [Helicobacter pylori 2017] Length = 856 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645 >gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14] Length = 618 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + PK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 200 VCPKGALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEM-FVGMGASK-VRDLFKQA 257 >gi|316932670|ref|YP_004107652.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] gi|315600384|gb|ADU42919.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris DX-1] Length = 638 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|242240755|ref|YP_002988936.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703] gi|242132812|gb|ACS87114.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703] Length = 654 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK IL+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|226226799|ref|YP_002760905.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27] gi|226089990|dbj|BAH38435.1| ATP-dependent protease FtsH [Gemmatimonas aurantiaca T-27] Length = 658 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 204 LPKGALLVGPPGTGKTLLAKAVAGEAGRPFFSMSGSDFVEM-FVGVGASR-VRDLFE 258 >gi|225556242|gb|EEH04531.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus G186AR] Length = 428 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201 Query: 113 IVRE 116 + R+ Sbjct: 202 LARK 205 >gi|241557135|ref|XP_002400178.1| ATPase, putative [Ixodes scapularis] gi|215501757|gb|EEC11251.1| ATPase, putative [Ixodes scapularis] Length = 340 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A AGA F + + T +VG E+++R L VA Sbjct: 94 PKGLLLFGPPGTGKTLIGKCIASQAGATFFCISASSLTS-KWVGEG-EKMVRALFAVA 149 >gi|148259383|ref|YP_001233510.1| ATP-dependent metalloprotease FtsH [Acidiphilium cryptum JF-5] gi|326402604|ref|YP_004282685.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] gi|146401064|gb|ABQ29591.1| membrane protease FtsH catalytic subunit [Acidiphilium cryptum JF-5] gi|325049465|dbj|BAJ79803.1| ATP-dependent protease FtsH [Acidiphilium multivorum AIU301] Length = 641 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 189 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243 >gi|306430713|emb|CBJ17103.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430721|emb|CBJ17107.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430725|emb|CBJ17109.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|299134182|ref|ZP_07027375.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2] gi|298590929|gb|EFI51131.1| ATP-dependent metalloprotease FtsH [Afipia sp. 1NLS2] Length = 638 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|209543376|ref|YP_002275605.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter diazotrophicus PAl 5] gi|209531053|gb|ACI50990.1| ATP-dependent metalloprotease FtsH [Gluconacetobacter diazotrophicus PAl 5] Length = 643 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|29654649|ref|NP_820341.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 493] gi|161831494|ref|YP_001597194.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331] gi|29541917|gb|AAO90855.1| cell division protein [Coxiella burnetii RSA 493] gi|161763361|gb|ABX79003.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 331] Length = 647 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|307636958|gb|ADN79408.1| ClpB protein [Helicobacter pylori 908] Length = 856 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645 >gi|296160892|ref|ZP_06843704.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] gi|295888781|gb|EFG68587.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] Length = 495 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R ++L + PK +L+VG G GKT +++ +A AG PF + + F E+ Sbjct: 29 LRNAERYRRLGGKI-----PKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSAFVEM- 82 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 83 FVGVGAAR-VRDLFEQA 98 >gi|194674963|ref|XP_612083.4| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus] gi|297485228|ref|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus] gi|296478145|gb|DAA20260.1| AFG3(ATPase family gene 3)-like 1-like [Bos taurus] Length = 845 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT +++ A AG PFI V ++F E+ +VG + +RD+ +A Sbjct: 310 IPKGALLTGPPGTGKTLLAKATAGEAGVPFITVNGSEFLEM-FVGVGPAR-VRDMFALA 366 >gi|209886398|ref|YP_002290255.1| putative Cell division protease FtsH -like protein [Oligotropha carboxidovorans OM5] gi|209874594|gb|ACI94390.1| putative Cell division protease FtsH -like protein [Oligotropha carboxidovorans OM5] Length = 638 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|121602051|ref|YP_988506.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis KC583] gi|310943119|sp|A1URA3|FTSH_BARBK RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|120614228|gb|ABM44829.1| ATP-dependent metallopeptidase HflB [Bartonella bacilliformis KC583] Length = 764 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|85714371|ref|ZP_01045359.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A] gi|85698818|gb|EAQ36687.1| peptidase M41, FtsH [Nitrobacter sp. Nb-311A] Length = 640 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|46206271|ref|ZP_00047502.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum magnetotacticum MS-1] Length = 264 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 53 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 109 >gi|323455708|gb|EGB11576.1| hypothetical protein AURANDRAFT_10538 [Aureococcus anophagefferens] Length = 574 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P+ +LL GP G GKT ++R A AG PFI ++F E+ +VG +I Sbjct: 162 PRGVLLEGPPGTGKTLLARACAGEAGVPFISTSGSEFVEM-FVGVGASRI 210 >gi|298713780|emb|CBJ27152.1| conserved unknown protein [Ectocarpus siliculosus] Length = 453 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 16/132 (12%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK ILL GP G GKT ++R A+ A F+K+ + ++ ++G +++RD A Sbjct: 227 PKGILLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQM-FIGDGA-KLVRD----AFE 280 Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFRKKLR-----DGEISDKE 164 + +E +D+ + A I +E LDA+ K S REV R L DG S+ + Sbjct: 281 LAKEKCKDQQKGGAIIFIDE--LDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFSSNDK 338 Query: 165 IDIEVADTSSDI 176 I + A D+ Sbjct: 339 IKVIAATNRPDV 350 >gi|215408561|emb|CAR31130.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|160901931|ref|YP_001567512.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95] gi|310943086|sp|A9BFL9|FTSH1_PETMO RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|160359575|gb|ABX31189.1| ATP-dependent metalloprotease FtsH [Petrotoga mobilis SJ95] Length = 653 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N Q+L A MPK LLVGP G GKT +R +A A PF + F E+ Sbjct: 198 LKNPQEFQELGAR-----MPKGTLLVGPPGTGKTLTARAIAGEADVPFYYASGSDFVEL- 251 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 252 FVGVGASR-VRDLFKTA 267 >gi|169618870|ref|XP_001802848.1| hypothetical protein SNOG_12628 [Phaeosphaeria nodorum SN15] gi|111058806|gb|EAT79926.1| hypothetical protein SNOG_12628 [Phaeosphaeria nodorum SN15] Length = 437 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 151 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 204 Query: 113 IVRE 116 + R+ Sbjct: 205 LARK 208 >gi|227489340|ref|ZP_03919656.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC 51867] gi|227090713|gb|EEI26025.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC 51867] Length = 776 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 266 >gi|224457497|ref|ZP_03665970.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis MA00-2987] gi|282159986|gb|ADA79377.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis NE061598] Length = 648 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|254487525|ref|ZP_05100730.1| cell division protein FtsH [Roseobacter sp. GAI101] gi|214044394|gb|EEB85032.1| cell division protein FtsH [Roseobacter sp. GAI101] Length = 635 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|212212273|ref|YP_002303209.1| cell division protein [Coxiella burnetii CbuG_Q212] gi|212010683|gb|ACJ18064.1| cell division protein [Coxiella burnetii CbuG_Q212] Length = 650 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|152993533|ref|YP_001359254.1| cell division protein FtsH [Sulfurovum sp. NBC37-1] gi|310946765|sp|A6QBN8|FTSH_SULNB RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|151425394|dbj|BAF72897.1| cell division protein FtsH [Sulfurovum sp. NBC37-1] Length = 671 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL Sbjct: 216 IPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSVSGSGFIEM-FVGVGASR-VRDL 268 >gi|150864081|ref|XP_001382776.2| Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) [Scheffersomyces stipitis CBS 6054] gi|149385337|gb|ABN64747.2| Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) [Scheffersomyces stipitis CBS 6054] Length = 867 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G +AK V L+N + ++L A + P+ +L GP G GKT ++R A Sbjct: 390 RDVAGMAEAKEEVMEFVKFLQNPEKYERLGAKI-----PRGAILSGPPGTGKTLLARATA 444 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL A Sbjct: 445 GEAGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 478 >gi|148926137|ref|ZP_01809823.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845616|gb|EDK22708.1| membrane bound zinc metallopeptidase [Campylobacter jejuni subsp. jejuni CG8486] Length = 371 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 210 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 266 >gi|118497264|ref|YP_898314.1| ATP-dependent metalloprotease [Francisella tularensis subsp. novicida U112] gi|194323566|ref|ZP_03057343.1| cell division protein FtsH [Francisella tularensis subsp. novicida FTE] gi|208779057|ref|ZP_03246403.1| cell division protein FtsH [Francisella novicida FTG] gi|118423170|gb|ABK89560.1| ATP-dependent metalloprotease [Francisella novicida U112] gi|194322421|gb|EDX19902.1| cell division protein FtsH [Francisella tularensis subsp. novicida FTE] gi|208744857|gb|EDZ91155.1| cell division protein FtsH [Francisella novicida FTG] Length = 648 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|119180025|ref|XP_001241520.1| hypothetical protein CIMG_08683 [Coccidioides immitis RS] Length = 401 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N Sbjct: 128 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 173 >gi|39934201|ref|NP_946477.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris CGA009] gi|192289727|ref|YP_001990332.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris TIE-1] gi|39648049|emb|CAE26569.1| metalloprotease (cell division protein) FtsH [Rhodopseudomonas palustris CGA009] gi|192283476|gb|ACE99856.1| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris TIE-1] Length = 638 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|9279712|dbj|BAB01269.1| cell division protein FtsH-like [Arabidopsis thaliana] Length = 976 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 542 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 585 >gi|328675799|gb|AEB28474.1| Cell division protein FtsH [Francisella cf. novicida 3523] Length = 648 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|302881951|ref|XP_003039886.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256720753|gb|EEU34173.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 394 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +I+R + +A Sbjct: 144 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KIVRAVFSLA 199 >gi|254374098|ref|ZP_04989580.1| ATP-dependent metallopeptidase HflB [Francisella novicida GA99-3548] gi|151571818|gb|EDN37472.1| ATP-dependent metallopeptidase HflB [Francisella novicida GA99-3548] Length = 648 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|94498969|ref|ZP_01305507.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter sp. RED65] gi|94428601|gb|EAT13573.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter sp. RED65] Length = 870 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 EL ++++GQ DA AV+ A+R R R A L D P + L +GPTGVGKT + + Sbjct: 564 QELHKHVVGQDDAITAVSNAVR-RSR-----AGLSDPRKPNGSFLFLGPTGVGKTELCKA 617 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGR 97 LA + +++++++F E V R Sbjct: 618 LATFMFDSQDAMVRIDMSEFMEKHSVAR 645 >gi|83952816|ref|ZP_00961546.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius nubinhibens ISM] gi|83835951|gb|EAP75250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius nubinhibens ISM] Length = 750 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 437 KDLAASLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 490 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++L+ G ++ +++++ E GYVG + ++ D VD Sbjct: 491 VAKQLSMTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 541 >gi|288941980|ref|YP_003444220.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180] gi|288897352|gb|ADC63188.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180] Length = 639 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|227540928|ref|ZP_03970977.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC 51866] gi|227183188|gb|EEI64160.1| cell division protein FtsH [Corynebacterium glucuronolyticum ATCC 51866] Length = 776 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 210 IPRGVLLYGPPGTGKTLMARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 266 >gi|255079944|ref|XP_002503552.1| predicted protein [Micromonas sp. RCC299] gi|226518819|gb|ACO64810.1| predicted protein [Micromonas sp. RCC299] Length = 886 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 P +LLVG G GKT ++R +A AG PFI V ++F E+ Y+G + +RD+ Sbjct: 421 PCGVLLVGAPGTGKTLLARAVAGEAGVPFISVSASEFVEL-YMGMGAAR-VRDV 472 >gi|196004594|ref|XP_002112164.1| hypothetical protein TRIADDRAFT_50249 [Trichoplax adhaerens] gi|190586063|gb|EDV26131.1| hypothetical protein TRIADDRAFT_50249 [Trichoplax adhaerens] Length = 392 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P + S++ I +Q+ K AV + L + QQ+ D P+ +L+ GP G GKT Sbjct: 134 PNILYSDIGGMDIQKQEMKEAVELPLTHFDLYQQIGID-----PPRGVLMYGPPGCGKTM 188 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 189 LAKAVAHHTTASFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 228 >gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii] gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii] Length = 375 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P SE+ + +++ + A+ L N+ +++ DL PK ++L GP G GKT Sbjct: 123 PEVKYSEIGGLELQKEEIREAIEFPLINKNFYEKIGIDL-----PKGVMLFGPPGTGKTL 177 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + + +A A FIK ++F + Y+G +++RDL +A Sbjct: 178 VVKAVALKTKASFIKTAGSEFVQ-KYLGEG-PKMVRDLFKIA 217 >gi|153209334|ref|ZP_01947353.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat Q177'] gi|212218758|ref|YP_002305545.1| cell division protein [Coxiella burnetii CbuK_Q154] gi|120575405|gb|EAX32029.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii 'MSU Goat Q177'] gi|212013020|gb|ACJ20400.1| cell division protein [Coxiella burnetii CbuK_Q154] Length = 650 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|254372637|ref|ZP_04988126.1| ATP-dependent metalloprotease [Francisella tularensis subsp. novicida GA99-3549] gi|151570364|gb|EDN36018.1| ATP-dependent metalloprotease [Francisella novicida GA99-3549] Length = 638 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|134302352|ref|YP_001122321.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp. tularensis WY96-3418] gi|134050129|gb|ABO47200.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp. tularensis WY96-3418] Length = 648 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|158523054|ref|YP_001530924.1| ATP-dependent metalloprotease FtsH [Desulfococcus oleovorans Hxd3] gi|158511880|gb|ABW68847.1| ATP-dependent metalloprotease FtsH [Desulfococcus oleovorans Hxd3] Length = 646 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 191 IPKGVLLVGAPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 243 >gi|75676894|ref|YP_319315.1| peptidase M41, FtsH [Nitrobacter winogradskyi Nb-255] gi|74421764|gb|ABA05963.1| membrane protease FtsH catalytic subunit [Nitrobacter winogradskyi Nb-255] Length = 640 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|317008914|gb|ADU79494.1| heat shock protein [Helicobacter pylori India7] Length = 856 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645 >gi|300934644|ref|ZP_07149900.1| ATP-dependent Clp protease [Corynebacterium resistens DSM 45100] Length = 888 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 510 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 563 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 564 FAGPSGVGKTELSKALAEF 582 >gi|237748682|ref|ZP_04579162.1| cell division protease [Oxalobacter formigenes OXCC13] gi|229380044|gb|EEO30135.1| cell division protease [Oxalobacter formigenes OXCC13] Length = 627 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGLLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFETA 245 >gi|242793974|ref|XP_002482275.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC 10500] gi|218718863|gb|EED18283.1| membrane-spanning ATPase, putative [Talaromyces stipitatus ATCC 10500] Length = 425 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|154707633|ref|YP_001424787.1| cell division protein [Coxiella burnetii Dugway 5J108-111] gi|154356919|gb|ABS78381.1| cell division protein [Coxiella burnetii Dugway 5J108-111] Length = 650 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|225163496|ref|ZP_03725810.1| ATPase AAA-2 domain protein [Opitutaceae bacterium TAV2] gi|224801913|gb|EEG20195.1| ATPase AAA-2 domain protein [Opitutaceae bacterium TAV2] Length = 851 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 7/64 (10%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 I +E+ + +IGQ A A+A ALR R R ADL+D P + L VGPTGVGKT + Sbjct: 526 IEAEIQKVVIGQDVASIAIARALR-RSR-----ADLKDPRRPIGSFLFVGPTGVGKTETA 579 Query: 71 RRLA 74 ++LA Sbjct: 580 KQLA 583 >gi|56708367|ref|YP_170263.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] gi|110670837|ref|YP_667394.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis FSC198] gi|254370990|ref|ZP_04986993.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis FSC033] gi|254875190|ref|ZP_05247900.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis MA00-2987] gi|56604859|emb|CAG45943.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis SCHU S4] gi|110321170|emb|CAL09326.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis FSC198] gi|151569231|gb|EDN34885.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis FSC033] gi|254841189|gb|EET19625.1| ATP-dependent metalloprotease [Francisella tularensis subsp. tularensis MA00-2987] Length = 638 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 184 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|15611319|ref|NP_222970.1| heat shock protein [Helicobacter pylori J99] gi|11386720|sp|Q9ZMH1|CLPB_HELPJ RecName: Full=Chaperone protein ClpB gi|4154766|gb|AAD05825.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] Length = 856 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645 >gi|306430647|emb|CBJ17070.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|296117359|ref|ZP_06835949.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769] gi|295976125|gb|EFG82913.1| cell division protein ftsH [Gluconacetobacter hansenii ATCC 23769] Length = 644 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|187931961|ref|YP_001891946.1| ATP-dependent metalloprotease [Francisella tularensis subsp. mediasiatica FSC147] gi|187712870|gb|ACD31167.1| ATP-dependent metalloprotease [Francisella tularensis subsp. mediasiatica FSC147] Length = 648 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|165924052|ref|ZP_02219884.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334] gi|165916511|gb|EDR35115.1| ATP-dependent metallopeptidase HflB [Coxiella burnetii RSA 334] Length = 650 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 188 MPCGVLLVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 244 >gi|115315152|ref|YP_763875.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp. holarctica OSU18] gi|115130051|gb|ABI83238.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp. holarctica OSU18] Length = 648 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|2062173|gb|AAB63647.1| cell division protein FtsH isolog [Arabidopsis thaliana] Length = 983 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 604 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 647 >gi|72092070|ref|XP_784405.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115940005|ref|XP_001186119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 271 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ +A+ AG FI ++ + T+ Y Sbjct: 132 PKGVLLYGPPGCGKTMIAKAIAKDAGCRFINLQASNLTDKWY 173 >gi|42523406|ref|NP_968786.1| cell division protein [Bdellovibrio bacteriovorus HD100] gi|81617319|sp|Q6MLS7|FTSH1_BDEBA RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|39575612|emb|CAE79779.1| cell division protein [Bdellovibrio bacteriovorus HD100] Length = 645 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL + Sbjct: 195 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFE 249 >gi|15639752|ref|NP_219202.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025990|ref|YP_001933762.1| cell division protein [Treponema pallidum subsp. pallidum SS14] gi|6016059|sp|O83746|FTSH_TREPA RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|3323067|gb|AAC65728.1| cell division protein (ftsH) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018565|gb|ACD71183.1| cell division protein [Treponema pallidum subsp. pallidum SS14] Length = 609 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF ++ + F E+ +VG + +RDL A Sbjct: 173 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFRISGSDFIEM-FVGIGASR-VRDLFKQA 229 >gi|22298071|ref|NP_681318.1| cell division protein [Thermosynechococcus elongatus BP-1] gi|22294249|dbj|BAC08080.1| cell division protein [Thermosynechococcus elongatus BP-1] Length = 619 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 201 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEL-FVGVGSAR-VRDLFEQA 257 >gi|318056561|ref|ZP_07975284.1| cell division protein FtsH-like protein [Streptomyces sp. SA3_actG] gi|318081009|ref|ZP_07988341.1| cell division protein FtsH-like protein [Streptomyces sp. SA3_actF] Length = 640 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 230 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 289 Query: 110 AINIV 114 A +I+ Sbjct: 290 APSII 294 >gi|307103115|gb|EFN51378.1| hypothetical protein CHLNCDRAFT_37431 [Chlorella variabilis] Length = 238 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LLVGP G GKT +++ +A AG PF + T+F E+ +VG + +RD+ A Sbjct: 88 PAGMLLVGPPGTGKTLLAKAVAGEAGVPFFSIAGTEFMEM-FVGVGASR-VRDIFKQA 143 >gi|307721590|ref|YP_003892730.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294] gi|306979683|gb|ADN09718.1| ATPase AAA-2 domain protein [Sulfurimonas autotrophica DSM 16294] Length = 858 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 12/90 (13%) Query: 15 ELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 EL++ ++GQ A AVA A+ RN+ A L D+ P + L +GPTGVGKT ++ Sbjct: 568 ELNKTVVGQSQATHAVARAIKRNK-------AGLSDKNRPIGSFLFLGPTGVGKTQTAKT 620 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGRNV 99 LA+ + I+++++++ E V R V Sbjct: 621 LAKFLFDSEDALIRIDMSEYMEKHAVSRLV 650 >gi|301167025|emb|CBW26604.1| cell division protein [Bacteriovorax marinus SJ] Length = 645 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 190 IPKGCLLVGPPGTGKTLLARAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDLFE 244 >gi|328676753|gb|AEB27623.1| Cell division protein FtsH [Francisella cf. novicida Fx1] Length = 637 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|255994135|ref|ZP_05427270.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989] gi|255993803|gb|EEU03892.1| cell division protein FtsH [Eubacterium saphenum ATCC 49989] Length = 623 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK +LLVGP G GKT IS+ A A PF + + F E+ Sbjct: 180 LKNPAKFKELGARV-----PKGVLLVGPPGTGKTYISKAAAGEADVPFYTISGSDFVEM- 233 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 234 FVGVGASR-VRDL 245 >gi|166365336|ref|YP_001657609.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa NIES-843] gi|166087709|dbj|BAG02417.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa NIES-843] Length = 795 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 21/100 (21%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +L IIGQQ+A AV+ A+R R R +L++ P + + GPTGVGKT +++ Sbjct: 471 CQLHERIIGQQEAVNAVSRAIR-RAR-----VNLKNPNRPIASFIFAGPTGVGKTELTKA 524 Query: 73 LARL---AGAPFIKVEVTKFTE-----------IGYVGRN 98 LA+L + + I++++++F E GY+G N Sbjct: 525 LAKLLFGSESSMIRLDMSEFMESHTVSKLIGAPPGYIGYN 564 >gi|149194984|ref|ZP_01872077.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2] gi|149134905|gb|EDM23388.1| ZINC METALLOPEPTIDASE [Caminibacter mediatlanticus TB-2] Length = 647 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 204 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFNQA 260 >gi|89256753|ref|YP_514115.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica LVS] gi|89256757|ref|YP_514119.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica LVS] gi|156502918|ref|YP_001428983.1| ATP-dependent metallopeptidase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010897|ref|ZP_02275828.1| cell division protein FtsH [Francisella tularensis subsp. holarctica FSC200] gi|254368050|ref|ZP_04984070.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica 257] gi|290953313|ref|ZP_06557934.1| ATP-dependent metallopeptidase family protein [Francisella tularensis subsp. holarctica URFT1] gi|295313457|ref|ZP_06804057.1| ATP-dependent metallopeptidase family protein [Francisella tularensis subsp. holarctica URFT1] gi|89144584|emb|CAJ79903.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica LVS] gi|89144588|emb|CAJ79907.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica LVS] gi|134253860|gb|EBA52954.1| ATP-dependent metalloprotease [Francisella tularensis subsp. holarctica 257] gi|156253521|gb|ABU62027.1| ATP-dependent metallopeptidase family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 648 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|222824258|ref|YP_002575832.1| cell division protein FtsH [Campylobacter lari RM2100] gi|222539480|gb|ACM64581.1| cell division protein FtsH [Campylobacter lari RM2100] Length = 640 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 208 IPKGLLLVGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEM-FVGVGASR-VRDLFENA 264 >gi|300934619|ref|ZP_07149875.1| cell division protein [Corynebacterium resistens DSM 45100] Length = 896 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 201 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFQQA 257 >gi|260581686|ref|ZP_05849483.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127] gi|260095279|gb|EEW79170.1| ATP-dependent chaperone ClpB [Haemophilus influenzae NT127] Length = 856 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|303321109|ref|XP_003070549.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240110245|gb|EER28404.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|320035995|gb|EFW17935.1| ATPase family AAA domain-containing protein 1 [Coccidioides posadasii str. Silveira] Length = 418 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N Sbjct: 145 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN 190 >gi|238492753|ref|XP_002377613.1| membrane-spanning ATPase, putative [Aspergillus flavus NRRL3357] gi|220696107|gb|EED52449.1| membrane-spanning ATPase, putative [Aspergillus flavus NRRL3357] Length = 417 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|254369652|ref|ZP_04985662.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp. holarctica FSC022] gi|157122611|gb|EDO66740.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp. holarctica FSC022] Length = 648 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 194 IPKGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 250 >gi|148654368|ref|YP_001274573.1| ATPase [Roseiflexus sp. RS-1] gi|148566478|gb|ABQ88623.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1] Length = 402 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 20/112 (17%) Query: 8 SPREIV-SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVG 65 +P +IV +L I GQ+ A AV I + NR R + R P+ +L +GPTGVG Sbjct: 17 NPLDIVEKQLRHTIFGQERAIEAV-IRVLNRARFGFSAGNPR---RPRATLLFLGPTGVG 72 Query: 66 KTAISRRLARLA---GAPFIKVEVTKFTE-------IG----YVGRNVEQII 103 KTA++RRLA+L G F+K++ + F++ +G YVGR+ + ++ Sbjct: 73 KTAMARRLAQLLRPDGEAFLKIDCSLFSQGHEVSALVGAPPSYVGRDQKPLL 124 >gi|222086969|ref|YP_002545503.1| cell division metalloproteinase protein [Agrobacterium radiobacter K84] gi|221724417|gb|ACM27573.1| cell division metalloproteinase protein [Agrobacterium radiobacter K84] Length = 647 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|16126707|ref|NP_421271.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter crescentus CB15] gi|221235489|ref|YP_002517926.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter crescentus NA1000] gi|13424017|gb|AAK24439.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Caulobacter crescentus CB15] gi|220964662|gb|ACL96018.1| ATP-dependent clp protease ATP-binding subunit ClpA [Caulobacter crescentus NA1000] Length = 776 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +E+ S+L R + GQ +A +A A++ A LR+ P + L GPTGVGKT Sbjct: 462 KELESDLKRAVFGQDEALSQLAAAMKLAR------AGLREPNKPIGSYLFSGPTGVGKTE 515 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 +++LA+ G ++ +++++ E GYVG + + D VD Sbjct: 516 AAKQLAQTLGIEMLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGQLTDAVD 566 >gi|68249453|ref|YP_248565.1| ClpB [Haemophilus influenzae 86-028NP] gi|68057652|gb|AAX87905.1| ClpB [Haemophilus influenzae 86-028NP] gi|309973650|gb|ADO96851.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae R2846] Length = 856 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|212535740|ref|XP_002148026.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC 18224] gi|210070425|gb|EEA24515.1| membrane-spanning ATPase, putative [Penicillium marneffei ATCC 18224] Length = 425 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|197305085|pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp gi|197305086|pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 172 >gi|145629931|ref|ZP_01785713.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae R3021] gi|229844737|ref|ZP_04464876.1| ClpB [Haemophilus influenzae 6P18H1] gi|144984212|gb|EDJ91635.1| hypothetical protein CGSHi22421_07768 [Haemophilus influenzae R3021] gi|229812451|gb|EEP48141.1| ClpB [Haemophilus influenzae 6P18H1] Length = 856 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|145341796|ref|XP_001415989.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576212|gb|ABO94281.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 247 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +P LLVGP G GKT ++R +A +G F V ++F E+ +VGR ++ Sbjct: 36 LPTGCLLVGPPGTGKTLLARAVAGESGVAFFPVAASEFVEL-FVGRGAARV 85 >gi|330991883|ref|ZP_08315832.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp. SXCC-1] gi|329760904|gb|EGG77399.1| ATP-dependent zinc metalloprotease FtsH [Gluconacetobacter sp. SXCC-1] Length = 646 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|312210594|emb|CBX90680.1| similar to ATPase family AAA domain-containing protein 1 [Leptosphaeria maculans] Length = 453 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206 Query: 113 IVRE 116 + R+ Sbjct: 207 LARK 210 >gi|218441710|ref|YP_002380039.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218174438|gb|ACK73171.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 625 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 200 IPRGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 256 >gi|145632228|ref|ZP_01787963.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634718|ref|ZP_01790426.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae PittAA] gi|260579950|ref|ZP_05847780.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW] gi|144987135|gb|EDJ93665.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267884|gb|EDK07880.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae PittAA] gi|260093234|gb|EEW77167.1| ATP-dependent chaperone ClpB [Haemophilus influenzae RdAW] Length = 856 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|113953212|ref|YP_730528.1| cell division protein FtsH4 [Synechococcus sp. CC9311] gi|113880563|gb|ABI45521.1| cell division protein FtsH4 [Synechococcus sp. CC9311] Length = 620 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL Sbjct: 190 IPRGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIAASEFVEL-FVGVGASR-VRDL 242 >gi|51209907|ref|YP_063571.1| cell division protein [Gracilaria tenuistipitata var. liui] gi|50657661|gb|AAT79646.1| ftsH protease homolog [Gracilaria tenuistipitata var. liui] Length = 626 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLIGPPGTGKTLLAKAIAGEANVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|317156743|ref|XP_001825967.2| ATPase family AAA domain-containing protein 1 [Aspergillus oryzae RIB40] Length = 417 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|325108972|ref|YP_004270040.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis DSM 5305] gi|324969240|gb|ADY60018.1| membrane protease FtsH catalytic subunit [Planctomyces brasiliensis DSM 5305] Length = 751 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD AI Sbjct: 286 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDTFQQAI 343 Query: 112 N 112 Sbjct: 344 Q 344 >gi|302813234|ref|XP_002988303.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii] gi|300144035|gb|EFJ10722.1| hypothetical protein SELMODRAFT_426967 [Selaginella moellendorffii] Length = 829 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT ++R +A AG PF V +F E+ Y G + ++DL A Sbjct: 321 VPKGVLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEM-YAGVAAAR-VQDLFSRAR 378 Query: 112 NIV 114 N Sbjct: 379 NFA 381 >gi|255527632|ref|ZP_05394493.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium carboxidivorans P7] gi|296185310|ref|ZP_06853720.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium carboxidivorans P7] gi|255508674|gb|EET85053.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium carboxidivorans P7] gi|296050144|gb|EFG89568.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium carboxidivorans P7] Length = 739 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDE-LMPKNILLVGPTGVGKTAISRRLA 74 + + I GQ+ A ++ A++ A DE N+L VGPTGVGKT I ++++ Sbjct: 451 IKKEIFGQEKAIESIVTAIKKSR------AGFNDENKTVANLLFVGPTGVGKTEICKQVS 504 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 + P I+ +++++ E V R Sbjct: 505 KALNIPLIRFDMSEYQEKHTVAR 527 >gi|255264093|ref|ZP_05343435.1| cell division protease FtsH [Thalassiobium sp. R2A62] gi|255106428|gb|EET49102.1| cell division protease FtsH [Thalassiobium sp. R2A62] Length = 638 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|218674234|ref|ZP_03523903.1| cell division metalloproteinase protein [Rhizobium etli GR56] Length = 252 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 181 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 237 >gi|307153545|ref|YP_003888929.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306983773|gb|ADN15654.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 624 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 199 IPRGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEL-FVGAGAAR-VRDLFEQA 255 >gi|189194139|ref|XP_001933408.1| ATPase family AAA domain-containing protein 1-A [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978972|gb|EDU45598.1| ATPase family AAA domain-containing protein 1-A [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 465 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206 Query: 113 IVRE 116 + R+ Sbjct: 207 LARK 210 >gi|162149244|ref|YP_001603705.1| ATP-dependent Clp protease ATP-binding subunit clpA [Gluconacetobacter diazotrophicus PAl 5] gi|161787821|emb|CAP57419.1| ATP-dependent Clp protease ATP-binding subunit clpA [Gluconacetobacter diazotrophicus PAl 5] Length = 778 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A+ A++ A LRD P N L GPTGVGKT Sbjct: 461 RTLERDLKGMVYGQDRAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 514 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA+ G I+ +++++ E GYVG + ++ D +D Sbjct: 515 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 565 >gi|170593893|ref|XP_001901698.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi] gi|158590642|gb|EDP29257.1| ATP-dependent metalloprotease FtsH family protein [Brugia malayi] Length = 741 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-IGYVG----RNVEQIIRDL 106 +PK LL GP G GKT +++ LA + PFI + T+F E IG +G RN+ + + + Sbjct: 306 LPKGALLTGPPGCGKTFLAKALAAESSVPFISMNGTEFVEMIGGLGASRIRNLFKTAKKM 365 Query: 107 VDVAINI 113 I I Sbjct: 366 APCIIYI 372 >gi|145636576|ref|ZP_01792243.1| ClpB [Haemophilus influenzae PittHH] gi|145270102|gb|EDK10038.1| ClpB [Haemophilus influenzae PittHH] Length = 856 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|145495511|ref|XP_001433748.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124400868|emb|CAK66351.1| unnamed protein product [Paramecium tetraurelia] Length = 785 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK R L+ + ++L A + P+ LL GP G GKT +++ A Sbjct: 294 VAGQEEAKGEIREFVDFLKAPKKYKKLGARI-----PRGALLTGPPGTGKTLLAKACAGE 348 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF V ++F E+ YVG Sbjct: 349 AGVPFFYVSGSEFVEM-YVG 367 >gi|74181490|dbj|BAE30014.1| unnamed protein product [Mus musculus] Length = 314 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|83954495|ref|ZP_00963206.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1] gi|83840779|gb|EAP79950.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. NAS-14.1] Length = 635 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|325095291|gb|EGC48601.1| ATPase family AAA domain-containing protein [Ajellomyces capsulatus H88] Length = 428 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201 Query: 113 IVRE 116 + R+ Sbjct: 202 LARK 205 >gi|317013709|gb|ADU81145.1| heat shock protein [Helicobacter pylori Gambia94/24] Length = 856 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYMEKHAISR 645 >gi|301154792|emb|CBW14255.1| protein disaggregation chaperone [Haemophilus parainfluenzae T3T1] Length = 856 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|206562175|ref|YP_002232938.1| putative cell division-related metallo peptidase [Burkholderia cenocepacia J2315] gi|198038215|emb|CAR54168.1| putative cell division-related metallo peptidase [Burkholderia cenocepacia J2315] Length = 635 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK +L+VG G GKT ++R +A AG PF + + F E+ Sbjct: 188 LRSPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAGVPFFTISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|163733525|ref|ZP_02140968.1| cell division protein FtsH [Roseobacter litoralis Och 149] gi|161393313|gb|EDQ17639.1| cell division protein FtsH [Roseobacter litoralis Och 149] Length = 624 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 171 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227 >gi|16272799|ref|NP_439019.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae Rd KW20] gi|1168973|sp|P44403|CLPB_HAEIN RecName: Full=Chaperone protein ClpB gi|1573874|gb|AAC22518.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Haemophilus influenzae Rd KW20] Length = 856 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|302522154|ref|ZP_07274496.1| cell division protein [Streptomyces sp. SPB78] gi|302431049|gb|EFL02865.1| cell division protein [Streptomyces sp. SPB78] Length = 653 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 243 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 302 Query: 110 AINIV 114 A +I+ Sbjct: 303 APSII 307 >gi|299753427|ref|XP_001833271.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130] gi|298410295|gb|EAU88544.2| ATP-dependent peptidase [Coprinopsis cinerea okayama7#130] Length = 766 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG PF + F E+ +VG ++ +R+L A Sbjct: 350 LPKGVLLTGPPGTGKTMLARAVAGEAGVPFFFASGSDFEEM-FVGVGAKR-VRELFAAA 406 >gi|229825873|ref|ZP_04451942.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC 49176] gi|229789893|gb|EEP26007.1| hypothetical protein GCWU000182_01237 [Abiotrophia defectiva ATCC 49176] Length = 611 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ++L GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 201 IPKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 253 >gi|225708004|gb|ACO09848.1| 26S protease regulatory subunit 6B [Osmerus mordax] Length = 418 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|224085219|ref|XP_002307519.1| predicted protein [Populus trichocarpa] gi|222856968|gb|EEE94515.1| predicted protein [Populus trichocarpa] Length = 643 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 7/62 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL +YI+GQ++A +AV+ A+R R R +D P + L GPTGVGKT +++ Sbjct: 332 AELHKYIVGQEEAVKAVSHAIR-RAR-----VGTKDPNKPIASFLFTGPTGVGKTELAKA 385 Query: 73 LA 74 LA Sbjct: 386 LA 387 >gi|195053231|ref|XP_001993530.1| GH13014 [Drosophila grimshawi] gi|193900589|gb|EDV99455.1| GH13014 [Drosophila grimshawi] Length = 373 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 24 QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83 QD + +V + +R+R L + + PK +LL GP G GKT I++ A+ AG FI Sbjct: 107 QDLRESVVLPVRHR----DLFKESKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162 Query: 84 VEVTKFTEIGY 94 ++V T+ Y Sbjct: 163 LDVAILTDKWY 173 >gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila] gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210] Length = 708 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILLVGP G GKT ++R LA AG F ++F E+ +VG Sbjct: 309 LPKGILLVGPPGTGKTLLARALAGEAGCSFFYKSGSEFDEM-FVG 352 >gi|110679380|ref|YP_682387.1| cell division protein FtsH [Roseobacter denitrificans OCh 114] gi|109455496|gb|ABG31701.1| cell division protein FtsH [Roseobacter denitrificans OCh 114] Length = 641 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|333024173|ref|ZP_08452237.1| putative cell division protein [Streptomyces sp. Tu6071] gi|332744025|gb|EGJ74466.1| putative cell division protein [Streptomyces sp. Tu6071] Length = 651 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 241 MPRGVLLTGPPGTGKTLLARAVAGEANVPFFSASASEFIEMIVGVGASRVRELFAEARKV 300 Query: 110 AINIV 114 A +I+ Sbjct: 301 APSII 305 >gi|332523822|ref|ZP_08400074.1| negative regulator of genetic competence ClpC/MecB [Streptococcus porcinus str. Jelinkova 176] gi|332315086|gb|EGJ28071.1| negative regulator of genetic competence ClpC/MecB [Streptococcus porcinus str. Jelinkova 176] Length = 699 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 7/66 (10%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +EI S L ++IGQ A AVA A+R R R A D P + L VGPTGVGKT Sbjct: 407 KEIASRLKAHVIGQDQAVSAVARAIR-RNR-----AGFDDGNRPIGSFLFVGPTGVGKTE 460 Query: 69 ISRRLA 74 ++++LA Sbjct: 461 LAKQLA 466 >gi|297181897|gb|ADI18074.1| ATP-dependent zn proteases [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 639 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A A PF + + F E+ +VG + +RDL + Sbjct: 185 IPKGVLLMGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDLFE 239 >gi|297527012|ref|YP_003669036.1| ATPase associated with various cellular activities AAA_5 [Staphylothermus hellenicus DSM 12710] gi|297255928|gb|ADI32137.1| ATPase associated with various cellular activities AAA_5 [Staphylothermus hellenicus DSM 12710] Length = 381 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 + V EL R +G+++ + +A+A+ + ++++L+G G K+A+ Sbjct: 13 HKFVEELARPFVGREEEAKVIALAI----------------ISGEHVVLIGEPGTAKSAL 56 Query: 70 SRRLARLAGAPFIKVEVTKFTE 91 +RR A L A F K +TKFTE Sbjct: 57 ARRAAELINAKFFKYLLTKFTE 78 >gi|226470306|emb|CAX70433.1| YME1-Like (Mitochondrial Escape) AAA protease [Schistosoma japonicum] Length = 627 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN + + A L PK +LLVGP GVGKT +++ ++ A PF+ V + F E+ Sbjct: 185 LRNPEKFNHIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYVSGSSFEEV- 238 Query: 94 YVGRNVEQI 102 +VG ++ Sbjct: 239 FVGLGASRV 247 >gi|241206180|ref|YP_002977276.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860070|gb|ACS57737.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 648 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 195 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 251 >gi|260812674|ref|XP_002601045.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae] gi|229286336|gb|EEN57057.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae] Length = 665 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 424 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKLVRALFAVA 479 >gi|197302375|ref|ZP_03167432.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC 29176] gi|197298554|gb|EDY33097.1| hypothetical protein RUMLAC_01104 [Ruminococcus lactaris ATCC 29176] Length = 612 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 197 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 249 >gi|90418980|ref|ZP_01226891.1| ATP-dependent metalloprotease involved in cell division [Aurantimonas manganoxydans SI85-9A1] gi|90337060|gb|EAS50765.1| ATP-dependent metalloprotease involved in cell division [Aurantimonas manganoxydans SI85-9A1] Length = 645 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|325518654|gb|EGC98292.1| cell division protease [Burkholderia sp. TJI49] Length = 339 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 64 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 117 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 118 FVGVGAAR-VRDLFEQA 133 >gi|330926583|ref|XP_003301523.1| hypothetical protein PTT_13047 [Pyrenophora teres f. teres 0-1] gi|311323601|gb|EFQ90376.1| hypothetical protein PTT_13047 [Pyrenophora teres f. teres 0-1] Length = 463 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 153 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 206 Query: 113 IVRE 116 + R+ Sbjct: 207 LARK 210 >gi|262371848|ref|ZP_06065127.1| predicted protein [Acinetobacter junii SH205] gi|262311873|gb|EEY92958.1| predicted protein [Acinetobacter junii SH205] Length = 786 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 PK ILL GP G GKT I+R+L + A F V ++ + GY+G+ ++ Sbjct: 325 PKGILLYGPPGTGKTLIARKLQKHANCHFEAVNISDL-KAGYIGQTAPKV 373 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT--KFTEIGYVGRNVEQII 103 PK ILL GP G GKT I+R LA +G FI + K IG G V+Q+ Sbjct: 572 PKGILLYGPPGTGKTQIARVLASQSGLSFIGATTSDLKANYIGQSGSKVKQLF 624 >gi|261335539|emb|CBH18533.1| cell division protein FtsH homologue, putative [Trypanosoma brucei gambiense DAL972] Length = 677 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 24/152 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109 +PK LL G G GKT ++R +A A APF+ F EI G + V ++ + Sbjct: 205 LPKGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREA 264 Query: 110 AINIVRESRRDEV---------------REQASINAEERILDALVGKT-----ATSNTRE 149 A IV D + E +IN LD L K A +N E Sbjct: 265 APCIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPE 324 Query: 150 VFRKK-LRDGEISDKEIDIEVADTSSDISNFD 180 V K LR+G D+++++ + D S+ + F+ Sbjct: 325 VIDKALLREGRF-DRKVNVPMPDRSARVELFE 355 >gi|255326126|ref|ZP_05367213.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296] gi|255296837|gb|EET76167.1| cell division protease FtsH [Rothia mucilaginosa ATCC 25296] Length = 724 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 212 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 264 >gi|223889283|ref|ZP_03623870.1| cell division protein FtsH [Borrelia burgdorferi 64b] gi|223885204|gb|EEF56307.1| cell division protein FtsH [Borrelia burgdorferi 64b] Length = 639 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|209545020|ref|YP_002277249.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Gluconacetobacter diazotrophicus PAl 5] gi|209532697|gb|ACI52634.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Gluconacetobacter diazotrophicus PAl 5] Length = 778 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A+ A++ A LRD P N L GPTGVGKT Sbjct: 461 RTLERDLKGMVYGQDRAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 514 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA+ G I+ +++++ E GYVG + ++ D +D Sbjct: 515 VAKQLAKTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 565 >gi|226321254|ref|ZP_03796782.1| cell division protein FtsH [Borrelia burgdorferi Bol26] gi|226233286|gb|EEH32037.1| cell division protein FtsH [Borrelia burgdorferi Bol26] Length = 639 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|216263728|ref|ZP_03435723.1| cell division protein FtsH [Borrelia afzelii ACA-1] gi|215980572|gb|EEC21393.1| cell division protein FtsH [Borrelia afzelii ACA-1] Length = 639 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia] Length = 668 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILLVGP G GKT ++R LA AG F ++F E+ +VG Sbjct: 270 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 313 >gi|124359471|gb|ABN05909.1| Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M, neutral zinc metallopeptidases, zinc-binding site; Peptidase M41, FtsH extracellular [Medicago truncatula] Length = 569 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 241 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKA 297 >gi|150397697|ref|YP_001328164.1| ATPase [Sinorhizobium medicae WSM419] gi|150029212|gb|ABR61329.1| ATPase AAA-2 domain protein [Sinorhizobium medicae WSM419] Length = 868 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++++GQ DA +AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++++++++ E V R Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647 >gi|15595134|ref|NP_212923.1| cell division protein (ftsH) [Borrelia burgdorferi B31] gi|195942000|ref|ZP_03087382.1| cell division protein (ftsH) [Borrelia burgdorferi 80a] gi|216264644|ref|ZP_03436636.1| cell division protein FtsH [Borrelia burgdorferi 156a] gi|218249315|ref|YP_002375288.1| cell division protein FtsH [Borrelia burgdorferi ZS7] gi|221217602|ref|ZP_03589071.1| cell division protein FtsH [Borrelia burgdorferi 72a] gi|224533427|ref|ZP_03674020.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a] gi|225549393|ref|ZP_03770365.1| cell division protein FtsH [Borrelia burgdorferi 94a] gi|225550274|ref|ZP_03771233.1| cell division protein FtsH [Borrelia burgdorferi 118a] gi|226321220|ref|ZP_03796754.1| cell division protein FtsH [Borrelia burgdorferi 29805] gi|310943120|sp|B7J0N5|FTSH_BORBZ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|2688712|gb|AAC67120.1| cell division protein (ftsH) [Borrelia burgdorferi B31] gi|215981117|gb|EEC21924.1| cell division protein FtsH [Borrelia burgdorferi 156a] gi|218164503|gb|ACK74564.1| cell division protein FtsH [Borrelia burgdorferi ZS7] gi|221192548|gb|EEE18766.1| cell division protein FtsH [Borrelia burgdorferi 72a] gi|224513389|gb|EEF83747.1| cell division protein FtsH [Borrelia burgdorferi CA-11.2a] gi|225369142|gb|EEG98596.1| cell division protein FtsH [Borrelia burgdorferi 118a] gi|225370021|gb|EEG99462.1| cell division protein FtsH [Borrelia burgdorferi 94a] gi|226233374|gb|EEH32121.1| cell division protein FtsH [Borrelia burgdorferi 29805] gi|312148114|gb|ADQ30773.1| cell division protein FtsH [Borrelia burgdorferi JD1] Length = 639 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|283457233|ref|YP_003361803.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18] gi|310946761|sp|D2NQQ7|FTSH_ROTMD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|283133218|dbj|BAI63983.1| ATP-dependent Zn protease [Rothia mucilaginosa DY-18] Length = 756 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 233 IPKGVLLYGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 285 >gi|258542820|ref|YP_003188253.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-01] gi|256633898|dbj|BAH99873.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-01] gi|256636957|dbj|BAI02926.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-03] gi|256640010|dbj|BAI05972.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-07] gi|256643066|dbj|BAI09021.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-22] gi|256646121|dbj|BAI12069.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-26] gi|256649174|dbj|BAI15115.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-32] gi|256652161|dbj|BAI18095.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655218|dbj|BAI21145.1| Clp protease ATP-binding subunit ClpB [Acetobacter pasteurianus IFO 3283-12] Length = 871 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ+ A +AV+ A+R R R A L+D P + L +GPTGVGKT +++ L Sbjct: 569 ELRKSVVGQEQALKAVSNAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 622 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR +++++++F E V R Sbjct: 623 ARFLFDDDKALLRIDMSEFMEKHAVAR 649 >gi|227547907|ref|ZP_03977956.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM 44291] gi|227080012|gb|EEI17975.1| cell division protein FtsH [Corynebacterium lipophiloflavum DSM 44291] Length = 805 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 198 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 254 >gi|222480369|ref|YP_002566606.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453271|gb|ACM57536.1| AAA ATPase central domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 468 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 +L VGP G GKT +SR LA G P ++V+++ T +G +NVE+ Sbjct: 218 LLFVGPPGTGKTTVSRALAHELGIPLVEVKMSMITSQYLGETAKNVEK 265 >gi|224534150|ref|ZP_03674730.1| cell division protein FtsH [Borrelia spielmanii A14S] gi|224514575|gb|EEF84889.1| cell division protein FtsH [Borrelia spielmanii A14S] Length = 639 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|189501688|ref|YP_001957405.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus 5a2] gi|189497129|gb|ACE05676.1| hypothetical protein Aasi_0232 [Candidatus Amoebophilus asiaticus 5a2] Length = 691 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 224 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 280 >gi|83943922|ref|ZP_00956379.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36] gi|83845169|gb|EAP83049.1| ATP-dependent metalloprotease FtsH [Sulfitobacter sp. EE-36] Length = 638 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGALLEGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|329114582|ref|ZP_08243341.1| Chaperone protein ClpB [Acetobacter pomorum DM001] gi|326696062|gb|EGE47744.1| Chaperone protein ClpB [Acetobacter pomorum DM001] Length = 890 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ+ A +AV+ A+R R R A L+D P + L +GPTGVGKT +++ L Sbjct: 588 ELRKSVVGQEQALKAVSNAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 641 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR +++++++F E V R Sbjct: 642 ARFLFDDDKALLRIDMSEFMEKHAVAR 668 >gi|325662452|ref|ZP_08151058.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471286|gb|EGC74510.1| hypothetical protein HMPREF0490_01798 [Lachnospiraceae bacterium 4_1_37FAA] Length = 666 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ YVG + +RDL Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDL 254 >gi|291562242|emb|CBL41058.1| ATP-dependent metalloprotease FtsH [butyrate-producing bacterium SS3/4] Length = 616 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 209 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSISGSEFVEM-FVGMGAAK-VRDLFKQA 265 >gi|291515858|emb|CBK65068.1| ATP-dependent metalloprotease FtsH [Alistipes shahii WAL 8301] Length = 693 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 5/69 (7%) Query: 45 ADLRDEL---MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 AD EL +PK LLVGP G GKT +++ +A A PF+ + + F E+ +VG + Sbjct: 219 ADKYKELGAKIPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR 277 Query: 102 IIRDLVDVA 110 +RDL + A Sbjct: 278 -VRDLFEQA 285 >gi|312115440|ref|YP_004013036.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100] gi|311220569|gb|ADP71937.1| ATP-dependent chaperone ClpB [Rhodomicrobium vannielii ATCC 17100] Length = 866 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 E+ + +IGQ++A R+VA A+R R R A L+D P + + +GPTGVGKT +SR L Sbjct: 567 EVAKRVIGQEEAVRSVATAVR-RAR-----AGLQDPNRPIGSFMFLGPTGVGKTELSRAL 620 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A + ++++++++ E V R Sbjct: 621 AAFLFDDESAMVRIDMSEYMEKHSVAR 647 >gi|225551709|ref|ZP_03772653.1| cell division protein FtsH [Borrelia sp. SV1] gi|225371736|gb|EEH01162.1| cell division protein FtsH [Borrelia sp. SV1] Length = 639 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|154272137|ref|XP_001536921.1| ATPase family AAA domain-containing protein 1 [Ajellomyces capsulatus NAm1] gi|150408908|gb|EDN04364.1| ATPase family AAA domain-containing protein 1 [Ajellomyces capsulatus NAm1] Length = 428 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 148 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 201 Query: 113 IVRE 116 + R+ Sbjct: 202 LARK 205 >gi|111115623|ref|YP_710241.1| cell division protein [Borrelia afzelii PKo] gi|110890897|gb|ABH02065.1| cell division protein [Borrelia afzelii PKo] Length = 639 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|160878301|ref|YP_001557269.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] gi|160426967|gb|ABX40530.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] Length = 609 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 248 >gi|331086242|ref|ZP_08335324.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406401|gb|EGG85915.1| hypothetical protein HMPREF0987_01627 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 666 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 170 RDVAGEDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 224 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ YVG + +RDL Sbjct: 225 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDL 254 >gi|327193462|gb|EGE60358.1| cell division metalloproteinase protein [Rhizobium etli CNPAF512] Length = 643 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|332716439|ref|YP_004443905.1| cell division protein [Agrobacterium sp. H13-3] gi|325063124|gb|ADY66814.1| cell division protein [Agrobacterium sp. H13-3] Length = 654 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|319404753|emb|CBI78355.1| cell division protein FtsH [Bartonella rochalimae ATCC BAA-1498] Length = 696 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|238917787|ref|YP_002931304.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] gi|238873147|gb|ACR72857.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] Length = 622 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++L GP G GKT +++ +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 196 IPKGVILTGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEEA 252 >gi|148642414|ref|YP_001272927.1| proteasome-activating nucleotidase [Methanobrevibacter smithii ATCC 35061] gi|222446088|ref|ZP_03608603.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii DSM 2375] gi|288869526|ref|ZP_05974789.2| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM 2374] gi|148551431|gb|ABQ86559.1| ATP-dependent 26S proteasome regulatory subunit, RPT1 [Methanobrevibacter smithii ATCC 35061] gi|222435653|gb|EEE42818.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii DSM 2375] gi|288861736|gb|EFC94034.1| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM 2374] Length = 420 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 17/103 (16%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK ILL GP G GKT +++ +A A FIK+ ++F + Y+G +++R++ ++A Sbjct: 195 PKGILLYGPPGTGKTLLAKAVANETNATFIKIVASEFVK-KYIGEGA-RLVREVFELA-- 250 Query: 113 IVRESRRDEVREQASINAEERILDALVG---KTATSNTREVFR 152 + + A I +E LDA+ K++TS REV R Sbjct: 251 --------KEKAPAIIFIDE--LDAVAAKRLKSSTSGDREVQR 283 >gi|150397821|ref|YP_001328288.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419] gi|150029336|gb|ABR61453.1| ATP-dependent metalloprotease FtsH [Sinorhizobium medicae WSM419] Length = 645 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|30585275|gb|AAP36910.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 4 [synthetic construct] gi|61369393|gb|AAX43328.1| proteasome 26S subunit 4 [synthetic construct] gi|61369396|gb|AAX43329.1| proteasome 26S subunit 4 [synthetic construct] Length = 419 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|74141846|dbj|BAE40993.1| unnamed protein product [Mus musculus] Length = 418 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|38234566|ref|NP_940333.1| cell division protein [Corynebacterium diphtheriae NCTC 13129] gi|38200829|emb|CAE50533.1| Cell division protein [Corynebacterium diphtheriae] Length = 824 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL A Sbjct: 202 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFKQA 258 >gi|152964564|ref|YP_001360348.1| ATPase AAA [Kineococcus radiotolerans SRS30216] gi|151359081|gb|ABS02084.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216] Length = 851 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 +EL + +IGQ DA +A++ A+R R R A L+D P + + GPTGVGKT +++ Sbjct: 526 AELHKRVIGQNDAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKA 579 Query: 73 LAR-LAGA--PFIKVEVTKFTEIGYVGR 97 LA L G I++++++F+E V R Sbjct: 580 LAEFLFGEEDALIQLDMSEFSEKHTVSR 607 >gi|325264334|ref|ZP_08131065.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5] gi|324030405|gb|EGB91689.1| ATP-dependent metalloprotease FtsH [Clostridium sp. D5] Length = 606 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 248 >gi|317010545|gb|ADU84292.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Helicobacter pylori SouthAfrica7] Length = 856 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 12/91 (13%) Query: 12 IVSELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 I SEL + ++GQ+ A +A+A A+ RN+ A L D P + L +GPTGVGKT Sbjct: 562 IESELQKRVVGQEKALKAIAKAIKRNK-------AGLSDSNKPIGSFLFLGPTGVGKTES 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGR 97 ++ LA+ + I+++++++ E + R Sbjct: 615 AKALAQFLFDSDKNLIRIDMSEYLEKHAISR 645 >gi|312149056|gb|ADQ29127.1| cell division protein FtsH [Borrelia burgdorferi N40] Length = 639 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040554|gb|ACT57350.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 I +E+ + +IGQ A +V+ ALR R+R A L+D P + + +GPTGVGKT + Sbjct: 562 IETEISKSVIGQSAAVESVSNALR-RFR-----AGLQDPQRPMGSFMFLGPTGVGKTELV 615 Query: 71 RRLARLA---GAPFIKVEVTKFTEIGYVGR 97 + LARL I+++++++ E V R Sbjct: 616 KSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 >gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia] Length = 673 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILLVGP G GKT ++R LA AG F ++F E+ +VG Sbjct: 275 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 318 >gi|172065486|ref|YP_001816198.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] gi|171997728|gb|ACB68645.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] Length = 635 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|26341428|dbj|BAC34376.1| unnamed protein product [Mus musculus] Length = 418 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|74025930|ref|XP_829531.1| metalloprotease [Trypanosoma brucei TREU927] gi|70834917|gb|EAN80419.1| metalloprotease, putative [Trypanosoma brucei] Length = 677 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 24/152 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--GYVGRNVEQIIRDLVDV 109 +PK LL G G GKT ++R +A A APF+ F EI G + V ++ + Sbjct: 205 LPKGCLLTGSPGTGKTLLARAVAGEANAPFLSCSGADFIEIFGGSGPKRVRELFAQAREA 264 Query: 110 AINIVRESRRDEV---------------REQASINAEERILDALVGKT-----ATSNTRE 149 A IV D + E +IN LD L K A +N E Sbjct: 265 APCIVFIDEIDAIGSRNQSGRSMGGGGSEENRTINQLLAELDGLTSKEAIVVIAATNYPE 324 Query: 150 VFRKK-LRDGEISDKEIDIEVADTSSDISNFD 180 V K LR+G D+++++ + D S+ + F+ Sbjct: 325 VIDKALLREGRF-DRKVNVPMPDRSARVELFE 355 >gi|325577681|ref|ZP_08147956.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392] gi|325160426|gb|EGC72552.1| chaperone protein ClpB [Haemophilus parainfluenzae ATCC 33392] Length = 856 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|320335120|ref|YP_004171831.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] gi|319756409|gb|ADV68166.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] Length = 623 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R QL A + P +LLVGP G GKT +++ +A AG P+ + + F E+ Sbjct: 176 LRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAGEAGVPYFSISGSDFVEM- 229 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 230 FVGVGAAR-VRDLFEQA 245 >gi|312138070|ref|YP_004005406.1| DNA binding ATP-dependent peptidase [Rhodococcus equi 103S] gi|311887409|emb|CBH46721.1| putative DNA binding ATP-dependent peptidase [Rhodococcus equi 103S] Length = 851 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 511 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|306820237|ref|ZP_07453879.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551734|gb|EFM39683.1| cell division protein FtsH [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 624 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L++G G GKT +S+ +A AG PF + + F E+ YVG + +R+L D A Sbjct: 200 IPKGMLMIGSPGTGKTYLSKAVAGEAGVPFYSISGSGFVEM-YVGVGAAR-VRELFDQA 256 >gi|298244152|ref|ZP_06967958.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297551633|gb|EFH85498.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 770 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LLVGP G GKT ++R +A A PF + ++F E+ +VG + +RDL + A Sbjct: 319 IPRGALLVGPPGTGKTLLARAVAGEAQVPFFSMSASEFVEM-FVGVGASR-VRDLFNQA 375 >gi|224372201|ref|YP_002606573.1| HpFtsH [Nautilia profundicola AmH] gi|223588557|gb|ACM92293.1| HpFtsH [Nautilia profundicola AmH] Length = 640 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF V + F E+ +VG + +RDL + A Sbjct: 206 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFAVSGSSFIEM-FVGVGAAR-VRDLFNQA 262 >gi|182678641|ref|YP_001832787.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia indica subsp. indica ATCC 9039] gi|182634524|gb|ACB95298.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Beijerinckia indica subsp. indica ATCC 9039] Length = 829 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 18/115 (15%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + L+R + GQ A A+ A++ A LRD P + L GPTGVGKT ++ Sbjct: 466 LTETLERVVYGQNSAIEALTAAIKLAR------AGLRDGEKPIGSYLFSGPTGVGKTEVA 519 Query: 71 RRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 R+LA G ++ +++++ E GYVG + ++ D +D + V Sbjct: 520 RQLATSLGVELVRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDSIDQHPHCV 574 >gi|116253705|ref|YP_769543.1| cell division protein FtsH [Rhizobium leguminosarum bv. viciae 3841] gi|115258353|emb|CAK09455.1| putative cell division protein FtsH [Rhizobium leguminosarum bv. viciae 3841] Length = 643 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|86359049|ref|YP_470941.1| cell division metalloproteinase protein [Rhizobium etli CFN 42] gi|86283151|gb|ABC92214.1| cell division metalloproteinase protein [Rhizobium etli CFN 42] Length = 643 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|77165372|ref|YP_343897.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707] gi|254434916|ref|ZP_05048424.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] gi|76883686|gb|ABA58367.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC 19707] gi|207091249|gb|EDZ68520.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] Length = 629 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MPK +LL GP G GKT ++R +A A PF + ++F E+ +VG + RDL + A Sbjct: 206 MPKGVLLAGPPGTGKTLLARAVAGEARVPFFNISGSEFIEL-FVGVGAAR-ARDLFEQA 262 >gi|119386519|ref|YP_917574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus denitrificans PD1222] gi|119377114|gb|ABL71878.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus denitrificans PD1222] Length = 772 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 459 KDLDATLKRLVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 512 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 513 VAKQLASTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 563 >gi|319409312|emb|CBI82956.1| cell division protein FtsH [Bartonella schoenbuchensis R1] Length = 684 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|325675027|ref|ZP_08154714.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus equi ATCC 33707] gi|325554613|gb|EGD24288.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus equi ATCC 33707] Length = 851 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 511 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|296491906|ref|YP_003662371.1| hypothetical protein XNC1_p0088 [Xenorhabdus nematophila ATCC 19061] gi|289176791|emb|CBJ92956.1| hypothetical protein XNC1_p0088 [Xenorhabdus nematophila ATCC 19061] Length = 297 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 30/183 (16%) Query: 241 VENYGIVFLDEFDKIVARDS----GNGIGVSREGVQRDLLPLVEGSSVSTKYG------- 289 V GI+ LDEFDK+ A S NGI G+Q+ LL ++G + Sbjct: 103 VATKGIIHLDEFDKLSASFSVEKDVNGI-----GIQQSLLKPLDGVEIGITNPNPSRINP 157 Query: 290 ----SINTDHILFIASGAFH---VSRPADL-----LPEIQGRFPVRVHLKSLNKSDFRLI 337 ++NT++++F+ +G+F+ +S P +L +PE+ R +HLK N+++ + Sbjct: 158 NPILNLNTNNMIFVFTGSFNGKKMSCPKNLIDSGFIPELANRVDFFIHLKEPNENELFKM 217 Query: 338 LTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVL 397 D E L + +++G+ + F + LA A L + V ++++ Sbjct: 218 ANDDE--LYEKAVRFAESKGMNISFDDSFKSLLAREAFKLGGHYRSVSYLFNNIVYDKIV 275 Query: 398 EDI 400 E I Sbjct: 276 EMI 278 >gi|288819200|ref|YP_003433548.1| cell division protein [Hydrogenobacter thermophilus TK-6] gi|288788600|dbj|BAI70347.1| cell division protein [Hydrogenobacter thermophilus TK-6] gi|308752782|gb|ADO46265.1| ATP-dependent metalloprotease FtsH [Hydrogenobacter thermophilus TK-6] Length = 625 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL G GVGKT +++ +A A PFI V + F E+ +VG + +RDL D A Sbjct: 188 PKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEM-FVGVGAAR-VRDLFDTA 243 >gi|240276675|gb|EER40186.1| ATPase family AAA protein [Ajellomyces capsulatus H143] Length = 411 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 131 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 184 Query: 113 IVRE 116 + R+ Sbjct: 185 LARK 188 >gi|296126118|ref|YP_003633370.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM 12563] gi|296017934|gb|ADG71171.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM 12563] Length = 701 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + Sbjct: 213 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 267 >gi|227823304|ref|YP_002827276.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234] gi|227342305|gb|ACP26523.1| putative cell division protein FtsH [Sinorhizobium fredii NGR234] Length = 645 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|224070955|ref|XP_002303302.1| predicted protein [Populus trichocarpa] gi|222840734|gb|EEE78281.1| predicted protein [Populus trichocarpa] Length = 844 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 415 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 458 >gi|226443298|ref|NP_001140138.1| 26S protease regulatory subunit 6B [Salmo salar] gi|221221488|gb|ACM09405.1| 26S protease regulatory subunit 6B [Salmo salar] Length = 418 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|193213633|ref|YP_001999586.1| ATPase AAA-2 domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193087110|gb|ACF12386.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327] Length = 438 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 10/92 (10%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 I +EL R ++GQ +A RAV+ A++ R R A + DE P + + +GPTGVGKT ++ Sbjct: 135 IEAELHRRVVGQDEAVRAVSDAVK-RSR-----AGMGDEKRPIGSFIFLGPTGVGKTELA 188 Query: 71 RRLARLA---GAPFIKVEVTKFTEIGYVGRNV 99 R LA I+++++++ E V R V Sbjct: 189 RTLAEYLFDDEDALIRIDMSEYMEAHTVSRLV 220 >gi|190893271|ref|YP_001979813.1| cell division metalloproteinase [Rhizobium etli CIAT 652] gi|190698550|gb|ACE92635.1| cell division metalloproteinase protein [Rhizobium etli CIAT 652] Length = 643 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|126734040|ref|ZP_01749787.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter sp. CCS2] gi|126716906|gb|EBA13770.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseobacter sp. CCS2] Length = 871 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ+ A R+VA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 563 ELGKRVIGQKTAVRSVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 616 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A + +++++++F E V R Sbjct: 617 AEYLFDDDSAMVRIDMSEFMEKHAVAR 643 >gi|5729991|ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens] gi|78045535|ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus] gi|57036547|ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7) isoform 1 [Canis familiaris] gi|109124720|ref|XP_001090787.1| PREDICTED: 26S protease regulatory subunit 6B isoform 4 [Macaca mulatta] gi|114677257|ref|XP_001141141.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 3 [Pan troglodytes] gi|114677259|ref|XP_001141225.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 4 [Pan troglodytes] gi|114677261|ref|XP_001141307.1| PREDICTED: 26S protease regulatory subunit 6B isoform 5 [Pan troglodytes] gi|291414121|ref|XP_002723309.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 1 [Oryctolagus cuniculus] gi|297704775|ref|XP_002829267.1| PREDICTED: 26S protease regulatory subunit 6B-like [Pongo abelii] gi|301776689|ref|XP_002923751.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 1 [Ailuropoda melanoleuca] gi|332242479|ref|XP_003270413.1| PREDICTED: 26S protease regulatory subunit 6B isoform 1 [Nomascus leucogenys] gi|20532409|sp|P43686|PRS6B_HUMAN RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S proteasome AAA-ATPase subunit RPT3; AltName: Full=MB67-interacting protein; AltName: Full=MIP224; AltName: Full=Proteasome 26S subunit ATPase 4; AltName: Full=Tat-binding protein 7; Short=TBP-7 gi|75076754|sp|Q4R7L3|PRS6B_MACFA RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S proteasome AAA-ATPase subunit RPT3; AltName: Full=Proteasome 26S subunit ATPase 4 gi|115311846|sp|Q3T030|PRS6B_BOVIN RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S proteasome AAA-ATPase subunit RPT3; AltName: Full=Proteasome 26S subunit ATPase 4 gi|5080757|gb|AAD39267.1|AC007842_2 ATPase homolog [Homo sapiens] gi|2791680|gb|AAC26843.1| 26S proteasome ATPase subunit [Homo sapiens] gi|4096275|gb|AAC99817.1| MIP224 [Homo sapiens] gi|12653151|gb|AAH00343.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo sapiens] gi|15680265|gb|AAH14488.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo sapiens] gi|30583303|gb|AAP35896.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo sapiens] gi|61359261|gb|AAX41690.1| proteasome 26S subunit 4 [synthetic construct] gi|67969109|dbj|BAE00909.1| unnamed protein product [Macaca fascicularis] gi|74267788|gb|AAI02596.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Bos taurus] gi|119577333|gb|EAW56929.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform CRA_b [Homo sapiens] gi|123981944|gb|ABM82801.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [synthetic construct] gi|123996401|gb|ABM85802.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [synthetic construct] gi|158261593|dbj|BAF82974.1| unnamed protein product [Homo sapiens] gi|189053748|dbj|BAG36000.1| unnamed protein product [Homo sapiens] gi|296477804|gb|DAA19919.1| 26S protease regulatory subunit 6B [Bos taurus] Length = 418 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|319406242|emb|CBI79879.1| cell division protein FtsH [Bartonella sp. AR 15-3] Length = 696 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|256160407|ref|ZP_05458096.1| cell division protein FtsH [Brucella ceti M490/95/1] gi|256255613|ref|ZP_05461149.1| cell division protein FtsH [Brucella ceti B1/94] Length = 653 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|226324326|ref|ZP_03799844.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758] gi|225206774|gb|EEG89128.1| hypothetical protein COPCOM_02107 [Coprococcus comes ATCC 27758] Length = 715 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 221 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 275 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 276 AKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 307 >gi|161522900|ref|YP_001585829.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189348269|ref|YP_001941465.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|160346453|gb|ABX19537.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189338407|dbj|BAG47475.1| cell division protease [Burkholderia multivorans ATCC 17616] Length = 635 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|159185871|ref|NP_356910.2| metalloprotease [Agrobacterium tumefaciens str. C58] gi|159141005|gb|AAK89695.2| metalloprotease [Agrobacterium tumefaciens str. C58] Length = 648 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|154247012|ref|YP_001417970.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2] gi|154161097|gb|ABS68313.1| ATP-dependent metalloprotease FtsH [Xanthobacter autotrophicus Py2] Length = 640 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|307313053|ref|ZP_07592680.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti BL225C] gi|306899372|gb|EFN30006.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti BL225C] Length = 868 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++++GQ DA +AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++++++++ E V R Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647 >gi|300871007|ref|YP_003785879.1| ATP-dependent metalloprotease FtsH [Brachyspira pilosicoli 95/1000] gi|300688707|gb|ADK31378.1| ATP-dependent metalloprotease, FtsH [Brachyspira pilosicoli 95/1000] Length = 698 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + Sbjct: 211 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 265 >gi|297834500|ref|XP_002885132.1| EMB2083 [Arabidopsis lyrata subsp. lyrata] gi|297330972|gb|EFH61391.1| EMB2083 [Arabidopsis lyrata subsp. lyrata] Length = 874 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 440 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 483 >gi|291539854|emb|CBL12965.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4] Length = 719 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279 >gi|290473441|ref|YP_003466308.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004] gi|289172741|emb|CBJ79512.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004] Length = 638 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFEQA 244 >gi|257062950|ref|YP_003142622.1| membrane protease FtsH catalytic subunit [Slackia heliotrinireducens DSM 20476] gi|310946762|sp|C7N1I1|FTSH_SLAHD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|256790603|gb|ACV21273.1| membrane protease FtsH catalytic subunit [Slackia heliotrinireducens DSM 20476] Length = 783 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N + Q+L A + P+ LLVGP G GKT ++R +A A PF + ++F E+ Sbjct: 304 LVNPGKYQKLGAKI-----PRGCLLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEM- 357 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +R+L + A Sbjct: 358 FVGVGASR-VRNLFEQA 373 >gi|256822681|ref|YP_003146644.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella koreensis DSM 16069] gi|256796220|gb|ACV26876.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Kangiella koreensis DSM 16069] Length = 755 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 + L GPTGVGKT ++++LARL G I+++++++ E V R Sbjct: 489 SFLFAGPTGVGKTEVTKQLARLMGVELIRIDMSEYMERHTVSR 531 >gi|255549872|ref|XP_002515987.1| Cell division protein ftsH, putative [Ricinus communis] gi|223544892|gb|EEF46407.1| Cell division protein ftsH, putative [Ricinus communis] Length = 884 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 451 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 494 >gi|167753106|ref|ZP_02425233.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216] gi|167659420|gb|EDS03550.1| hypothetical protein ALIPUT_01377 [Alistipes putredinis DSM 17216] Length = 698 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF+ + + F E+ +VG + +RDL + A Sbjct: 225 IPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR-VRDLFEQA 281 >gi|149722121|ref|XP_001498472.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 4 isoform 2 [Equus caballus] Length = 387 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223 >gi|149722119|ref|XP_001498459.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 4 isoform 1 [Equus caballus] Length = 418 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|126466305|ref|YP_001041414.1| ATPase [Staphylothermus marinus F1] gi|126015128|gb|ABN70506.1| ATPase associated with various cellular activities, AAA_5 [Staphylothermus marinus F1] Length = 381 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 + V EL R +G+++ + +A+A+ + ++++L+G G K+A+ Sbjct: 13 HKFVEELARPFVGREEEAKVIALAI----------------ISGEHVVLIGEPGTAKSAL 56 Query: 70 SRRLARLAGAPFIKVEVTKFTE 91 +RR A L A F K +TKFTE Sbjct: 57 ARRAAELINAKFFKYLLTKFTE 78 >gi|15966361|ref|NP_386714.1| ATP-dependent protease [Sinorhizobium meliloti 1021] gi|307321060|ref|ZP_07600466.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti AK83] gi|54035884|sp|Q92MK7|CLPB_RHIME RecName: Full=Chaperone protein ClpB gi|15075632|emb|CAC47187.1| Probable ATP-dependent protease (heat shock protein) [Sinorhizobium meliloti 1021] gi|306893335|gb|EFN24115.1| ATP-dependent chaperone ClpB [Sinorhizobium meliloti AK83] Length = 868 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++++GQ DA +AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 567 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 620 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++++++++ E V R Sbjct: 621 ARFLFDDETALMRIDMSEYMEKHSVAR 647 >gi|117923752|ref|YP_864369.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1] gi|310943137|sp|A0L4S0|FTSH_MAGSM RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|117607508|gb|ABK42963.1| membrane protease FtsH catalytic subunit [Magnetococcus sp. MC-1] Length = 673 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 186 IPKGVLLVGPPGTGKTLLARAIAGEANVPFFNLSGSDFVEM-FVGVGAAR-VRDMFE 240 >gi|315605193|ref|ZP_07880240.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str. F0310] gi|315313114|gb|EFU61184.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str. F0310] Length = 683 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A A APF + ++F E+ YVG + +R+L + A Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264 >gi|318037365|ref|NP_001188178.1| 26S protease regulatory subunit 6b [Ictalurus punctatus] gi|308323801|gb|ADO29036.1| 26S protease regulatory subunit 6b [Ictalurus punctatus] Length = 418 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|296233807|ref|XP_002762172.1| PREDICTED: 26S protease regulatory subunit 6B [Callithrix jacchus] Length = 418 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|240851213|ref|YP_002972616.1| cell division protein FtsH [Bartonella grahamii as4aup] gi|240268336|gb|ACS51924.1| cell division protein FtsH [Bartonella grahamii as4aup] Length = 716 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|225628260|ref|ZP_03786294.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo] gi|254700353|ref|ZP_05162181.1| cell division protein FtsH [Brucella suis bv. 5 str. 513] gi|254703470|ref|ZP_05165298.1| cell division protein FtsH [Brucella suis bv. 3 str. 686] gi|254708441|ref|ZP_05170269.1| cell division protein FtsH [Brucella pinnipedialis M163/99/10] gi|254708706|ref|ZP_05170517.1| cell division protein FtsH [Brucella pinnipedialis B2/94] gi|254714553|ref|ZP_05176364.1| cell division protein FtsH [Brucella ceti M644/93/1] gi|254717450|ref|ZP_05179261.1| cell division protein FtsH [Brucella ceti M13/05/1] gi|254719694|ref|ZP_05181505.1| cell division protein FtsH [Brucella sp. 83/13] gi|256030232|ref|ZP_05443846.1| cell division protein FtsH [Brucella pinnipedialis M292/94/1] gi|260167907|ref|ZP_05754718.1| cell division protein FtsH [Brucella sp. F5/99] gi|225616106|gb|EEH13154.1| ATP-dependent metalloprotease FtsH [Brucella ceti str. Cudo] Length = 653 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|225620270|ref|YP_002721527.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1] gi|225215089|gb|ACN83823.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1] Length = 698 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + Sbjct: 209 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEM-FVGVGASR-VRDLFE 263 >gi|222087300|ref|YP_002545837.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] gi|221724748|gb|ACM27904.1| ATP-dependent Clp protease [Agrobacterium radiobacter K84] Length = 866 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL ++++GQ DA +AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 566 ELAKWVVGQGDAVQAVSRAVR-RSR-----AGLQDPNRPIGSFIFLGPTGVGKTELTKAL 619 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR ++++++++ E V R Sbjct: 620 ARFLFDDDTAMVRMDMSEYMEKHSVAR 646 >gi|160878484|ref|YP_001557452.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] gi|160427150|gb|ABX40713.1| ATP-dependent metalloprotease FtsH [Clostridium phytofermentans ISDg] Length = 681 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK ++ L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 182 VAGQEEAKESLTELVDFLHNPGKYTRIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 237 AKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 268 >gi|163814011|ref|ZP_02205404.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759] gi|158450705|gb|EDP27700.1| hypothetical protein COPEUT_00163 [Coprococcus eutactus ATCC 27759] Length = 649 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 11/69 (15%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67 SP+ I + LD+ I GQ +AK+ + L N + +N++ VGPTG GKT Sbjct: 353 SPKRIKAYLDKKIYGQDEAKQVASTLLWNHVNGR-----------ARNVVFVGPTGCGKT 401 Query: 68 AISRRLARL 76 I R++ L Sbjct: 402 EIFRQIKAL 410 >gi|153815238|ref|ZP_01967906.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756] gi|145847497|gb|EDK24415.1| hypothetical protein RUMTOR_01472 [Ruminococcus torques ATCC 27756] Length = 595 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 179 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 231 >gi|72388950|ref|XP_844770.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62176057|gb|AAX70178.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801304|gb|AAZ11211.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328017|emb|CBH10994.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 335 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 34/63 (53%) Query: 22 GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 G +D K+A+ ++ + R +L PK ILL GP G GKT I+R LAR G F Sbjct: 85 GLEDVKKALIEHVKWPFTRPELFEGNTLRSHPKGILLYGPPGTGKTLIARALARELGCAF 144 Query: 82 IKV 84 I V Sbjct: 145 INV 147 >gi|24430155|ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens] gi|73947622|ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2 isoform 2 [Canis familiaris] gi|114677263|ref|XP_001140980.1| PREDICTED: 26S protease regulatory subunit 6B isoform 1 [Pan troglodytes] gi|291414123|ref|XP_002723310.1| PREDICTED: proteasome 26S ATPase subunit 4 isoform 2 [Oryctolagus cuniculus] gi|301776691|ref|XP_002923752.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 2 [Ailuropoda melanoleuca] gi|332242481|ref|XP_003270414.1| PREDICTED: 26S protease regulatory subunit 6B isoform 2 [Nomascus leucogenys] gi|14714524|gb|AAH10396.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Homo sapiens] gi|119577332|gb|EAW56928.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform CRA_a [Homo sapiens] Length = 387 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223 >gi|89053532|ref|YP_508983.1| ATPase AAA-2 [Jannaschia sp. CCS1] gi|88863081|gb|ABD53958.1| ATPase AAA-2 [Jannaschia sp. CCS1] Length = 785 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 18/105 (17%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R + GQ A A+A +++ A LR+ P N L GPTGVGKT ++++LA Sbjct: 477 LKRVVFGQDKAIEALASSIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 530 Query: 75 RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 G I+ +++++ E GYVG + ++ D +D Sbjct: 531 DTLGVELIRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGID 575 >gi|49476134|ref|YP_034175.1| cell division protein ftsH [Bartonella henselae str. Houston-1] gi|49238942|emb|CAF28238.1| Cell division protein ftsH [Bartonella henselae str. Houston-1] Length = 715 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|25742677|ref|NP_476463.1| 26S protease regulatory subunit 6B [Rattus norvegicus] gi|124248577|ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus] gi|2492517|sp|Q63570|PRS6B_RAT RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S proteasome AAA-ATPase subunit RPT3; AltName: Full=Proteasome 26S subunit ATPase 4; Short=S6 ATPase; AltName: Full=Tat-binding protein 7; Short=TBP-7 gi|1395186|dbj|BAA09340.1| proteasomal ATPase (Tat-binding protein7) [Rattus norvegicus] gi|15215225|gb|AAH12708.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus musculus] gi|26346368|dbj|BAC36835.1| unnamed protein product [Mus musculus] gi|38970025|gb|AAH63145.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Rattus norvegicus] gi|74141366|dbj|BAE35967.1| unnamed protein product [Mus musculus] gi|74150548|dbj|BAE32301.1| unnamed protein product [Mus musculus] gi|74188866|dbj|BAE39209.1| unnamed protein product [Mus musculus] gi|148692213|gb|EDL24160.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus musculus] gi|149056489|gb|EDM07920.1| proteasome (prosome, macropain) 26S subunit, ATPase, 4, isoform CRA_a [Rattus norvegicus] Length = 418 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|88854791|ref|ZP_01129457.1| cell division protein [marine actinobacterium PHSC20C1] gi|88815952|gb|EAR25808.1| cell division protein [marine actinobacterium PHSC20C1] Length = 667 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ A AG PF + + F E+ +VG + +RDL + A Sbjct: 195 IPKGVLLYGPPGTGKTLLAKATAGEAGVPFYTISGSDFVEM-FVGVGASR-VRDLFEQA 251 >gi|291536774|emb|CBL09886.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1] Length = 719 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279 >gi|256061729|ref|ZP_05451866.1| cell division protein FtsH [Brucella neotomae 5K33] Length = 653 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|221104647|ref|XP_002160802.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata] Length = 470 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 47 IPKGVLLVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 103 >gi|148559481|ref|YP_001259545.1| cell division protein FtsH [Brucella ovis ATCC 25840] gi|148370738|gb|ABQ60717.1| cell division protein FtsH [Brucella ovis ATCC 25840] Length = 649 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila] gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila SB210] Length = 741 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q A L PK ILLVGP G GKT ++R LA AG F ++F E+ Sbjct: 326 LKNPKKYQDAGAKL-----PKGILLVGPPGTGKTLLARALAGEAGCSFYYKSGSEFDEM- 379 Query: 94 YVG 96 +VG Sbjct: 380 FVG 382 >gi|103485900|ref|YP_615461.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256] gi|98975977|gb|ABF52128.1| ATPase AAA-2 [Sphingopyxis alaskensis RB2256] Length = 862 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R +IGQQ A +AV+ A+R R R A L+D P + L +GPTGVGKT +++ LA Sbjct: 567 LGRRVIGQQQAVQAVSKAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALA 620 Query: 75 RLAGA---PFIKVEVTKFTEIGYVGR 97 +++++++F E V R Sbjct: 621 EFMFGDERAMVRIDMSEFMEKHAVAR 646 >gi|152968278|ref|YP_001364062.1| ATPase AAA [Kineococcus radiotolerans SRS30216] gi|151362795|gb|ABS05798.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216] Length = 840 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 +EL + +IGQ DA +A++ A+R R R A L+D P + + GPTGVGKT +++ Sbjct: 511 AELHKRVIGQNDAIKALSQAIR-RTR-----AGLKDPKRPGGSFIFAGPTGVGKTELAKA 564 Query: 73 LAR-LAGA--PFIKVEVTKFTEIGYVGR 97 LA L G I++++++F+E V R Sbjct: 565 LAEFLFGEEDALIQLDMSEFSEKHTVSR 592 >gi|306844684|ref|ZP_07477269.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1] gi|306274856|gb|EFM56626.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO1] Length = 640 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|300721531|ref|YP_003710806.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC 19061] gi|297628023|emb|CBJ88572.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC 19061] Length = 637 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFEQA 244 >gi|296116797|ref|ZP_06835403.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconacetobacter hansenii ATCC 23769] gi|295976598|gb|EFG83370.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconacetobacter hansenii ATCC 23769] Length = 779 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A+ A++ A LRD P N L GPTGVGKT Sbjct: 460 RSLERDLKGMVYGQDKAIEALTAAIKLSR------AGLRDAEKPIGNYLFSGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G I+ +++++ E GYVG + ++ D +D Sbjct: 514 VAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 564 >gi|227834051|ref|YP_002835758.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC 700975] gi|262183463|ref|ZP_06042884.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC 700975] gi|227455067|gb|ACP33820.1| ATP-dependent Clp protease [Corynebacterium aurimucosum ATCC 700975] Length = 925 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 +KLT S R + EL + IIGQ DA +AV+ A+R R R A L+D P + + Sbjct: 514 LKLTEKESNRLLNMEEELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 568 FAGPSGVGKTELSKSLA 584 >gi|218135109|ref|ZP_03463913.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC 43243] gi|217990494|gb|EEC56505.1| hypothetical protein BACPEC_03014 [Bacteroides pectinophilus ATCC 43243] Length = 652 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + GQ +AK + + L N + + A L PK LLVGP G GKT +++ +A Sbjct: 183 RDVAGQDEAKESLTEIVDFLHNPDKYSHIGAKL-----PKGALLVGPPGTGKTLLAKAVA 237 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL A Sbjct: 238 GEAKVPFFSLSGSDFVEM-FVGVGASR-VRDLFKQA 271 >gi|194385552|dbj|BAG65153.1| unnamed protein product [Homo sapiens] Length = 273 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 68 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 109 >gi|33862722|ref|NP_894282.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. MIT 9313] gi|54035808|sp|Q7V8B1|CLPB_PROMM RecName: Full=Chaperone protein ClpB gi|33634638|emb|CAE20624.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. MIT 9313] Length = 865 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL + +IGQ+ A +AVA A+ Q+ A L D P + L +GPTGVGKT +S+ Sbjct: 570 AELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 623 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGR 97 LA + A ++++++++ E V R Sbjct: 624 LASQLFDSEAALVRIDMSEYMEKHSVSR 651 >gi|302760953|ref|XP_002963899.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii] gi|300169167|gb|EFJ35770.1| hypothetical protein SELMODRAFT_142036 [Selaginella moellendorffii] Length = 765 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT ++R +A AG PF V +F E+ Y G + ++DL A Sbjct: 251 VPKGVLLHGPPGTGKTLLARAIAGEAGLPFFSVGGAEFVEM-YAGVAAAR-VQDLFSRAR 308 Query: 112 NIV 114 N Sbjct: 309 NFA 311 >gi|298246220|ref|ZP_06970026.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] gi|297553701|gb|EFH87566.1| ATP-dependent metalloprotease FtsH [Ktedonobacter racemifer DSM 44963] Length = 668 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 42/208 (20%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD--- 108 +P+ +LLVGP G GKT ++R +A A PF + ++F E+ VG + +RDL + Sbjct: 244 IPRGVLLVGPPGTGKTLLARAVAGEASVPFFSMSGSEFVEV-LVGVGASR-VRDLFEQAK 301 Query: 109 -VAINIVRESRRDEVREQ--ASINAE---ERILDALVGKTATSNTREVF----------- 151 A +I+ D V Q +SIN+ E+ L+ L+ + +TR+ Sbjct: 302 KAAPSIIFIDEIDAVGRQRGSSINSNDEREQTLNQLLVEMDGFDTRQAVVVIAATNRPDG 361 Query: 152 --RKKLRDGEISDKEIDIEVADTSS-----DISNFDIPGGASVGILNLSELFSKVMGS-- 202 + LR G D+ + ++ D + I + D+P A V ++ ++ ++G+ Sbjct: 362 LDKALLRPGRF-DRRVTVDRPDWNGRLAILKIHSRDVPLAADVDMITIARATPGMVGADL 420 Query: 203 ----------GRKKKIRMSVQKCYPELM 220 ++ + Q+C+ E + Sbjct: 421 ANLVNEAALLAARRNLDAVTQRCFEEAL 448 >gi|261222816|ref|ZP_05937097.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94] gi|265998775|ref|ZP_06111332.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1] gi|260921400|gb|EEX88053.1| ATP-dependent metalloprotease FtsH [Brucella ceti B1/94] gi|262553464|gb|EEZ09233.1| ATP-dependent metalloprotease FtsH [Brucella ceti M490/95/1] Length = 644 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|213027550|ref|ZP_03341997.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 287 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|209875483|ref|XP_002139184.1| ATPase, AAA family protein [Cryptosporidium muris RN66] gi|209554790|gb|EEA04835.1| ATPase, AAA family protein [Cryptosporidium muris RN66] Length = 525 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L+ P+ ++SE D +IG Q+ K+ + + N +R L L P+ ILL GP Sbjct: 233 LSIRIRPKSLISEND--VIGLQEVKKMLRDKIINPIQRPDLHIGLHS--APRGILLFGPP 288 Query: 63 GVGKTAISRRLARLAGAPFIKV 84 G GKT +++ +A A F V Sbjct: 289 GTGKTMLAKWIANECKATFFDV 310 >gi|319899361|ref|YP_004159458.1| cell division protein FtsH [Bartonella clarridgeiae 73] gi|319403329|emb|CBI76888.1| cell division protein FtsH [Bartonella clarridgeiae 73] Length = 693 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|317502306|ref|ZP_07960475.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|331089910|ref|ZP_08338802.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896262|gb|EFV18364.1| ATP-dependent metalloprotease FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|330403142|gb|EGG82703.1| hypothetical protein HMPREF1025_02385 [Lachnospiraceae bacterium 3_1_46FAA] Length = 613 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 197 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 249 >gi|309389975|gb|ADO77855.1| membrane protease FtsH catalytic subunit [Halanaerobium praevalens DSM 2228] Length = 633 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +L+VGP G GKT +++ +A AG PF + + F E+ +VG + +RDL + Sbjct: 187 VPKGVLMVGPPGTGKTLMAKAVAGEAGVPFYFISGSDFVEM-FVGVGASR-VRDLFE 241 >gi|294634508|ref|ZP_06713043.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685] gi|291092022|gb|EFE24583.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685] Length = 657 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|297743224|emb|CBI36091.3| unnamed protein product [Vitis vinifera] Length = 904 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 470 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 513 >gi|206895236|ref|YP_002247205.1| negative regulator of genetic competence ClpC/mecB [Coprothermobacter proteolyticus DSM 5265] gi|206737853|gb|ACI16931.1| negative regulator of genetic competence ClpC/mecB [Coprothermobacter proteolyticus DSM 5265] Length = 805 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAI 69 EI L R I+GQ +A AVA A+R R R L+D+ P + L +GPTGVGKT + Sbjct: 495 EIEDYLHRRIVGQNEAVTAVAKAIR-RSR-----TGLQDDRRPIGVFLFLGPTGVGKTEL 548 Query: 70 SRRLARLAGA---PFIKVEVTKFTEIGYVGRNV 99 +R LA I+++++++ E V R V Sbjct: 549 ARALAEFMFGEEEALIRIDMSEYMEKFNVSRLV 581 >gi|194246437|ref|YP_002004076.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] gi|310943087|sp|B3R057|FTSH1_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|193806794|emb|CAP18221.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] Length = 600 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG Sbjct: 207 IPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVG 250 >gi|194764699|ref|XP_001964466.1| GF23193 [Drosophila ananassae] gi|190614738|gb|EDV30262.1| GF23193 [Drosophila ananassae] Length = 405 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 + +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 159 VQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 213 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RDL +A Sbjct: 214 FIRVVGSEFVQ-KYLGEG-PRMVRDLFRLA 241 >gi|163869122|ref|YP_001610361.1| cell division protein FtsH [Bartonella tribocorum CIP 105476] gi|161018808|emb|CAK02366.1| cell division protein FtsH [Bartonella tribocorum CIP 105476] Length = 722 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|153008554|ref|YP_001369769.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] gi|151560442|gb|ABS13940.1| ATP-dependent metalloprotease FtsH [Ochrobactrum anthropi ATCC 49188] Length = 651 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|18401080|ref|NP_566541.1| EMB2083 (embryo defective 2083); ATP binding / ATP-dependent peptidase/ ATPase/ metalloendopeptidase/ metallopeptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase [Arabidopsis thaliana] gi|332642273|gb|AEE75794.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 876 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 442 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 485 >gi|15966488|ref|NP_386841.1| metalloprotease transmembrane protein [Sinorhizobium meliloti 1021] gi|307300475|ref|ZP_07580255.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C] gi|307318340|ref|ZP_07597775.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83] gi|15075759|emb|CAC47314.1| Probable metalloprotease transmembrane protein [Sinorhizobium meliloti 1021] gi|306896022|gb|EFN26773.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti AK83] gi|306904641|gb|EFN35225.1| ATP-dependent metalloprotease FtsH [Sinorhizobium meliloti BL225C] Length = 645 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|329961967|ref|ZP_08299978.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides fluxus YIT 12057] gi|328530615|gb|EGF57473.1| putative ATP-dependent Clp protease ATP-binding subunit ClpA [Bacteroides fluxus YIT 12057] Length = 739 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ +A R V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 455 IYGQDEAVRQVVEAV------QMSKAGLMDENKPLASLLFVGPTGVGKTEVAKVLATELG 508 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GY+G ++ D + N V Sbjct: 509 IALQRFDMSEYTEKHTVAKLIGSPAGYIGYEDGGLLTDAIRKTPNCV 555 >gi|281340746|gb|EFB16330.1| hypothetical protein PANDA_012963 [Ailuropoda melanoleuca] Length = 406 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 140 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 194 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 195 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 242 >gi|209550772|ref|YP_002282689.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536528|gb|ACI56463.1| ATP-dependent metalloprotease FtsH [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 643 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 190 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 246 >gi|195953047|ref|YP_002121337.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932659|gb|ACG57359.1| ATPase AAA-2 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 982 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 21/92 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 +IGQ DA AVA A+R R R A L+D P + L +GPTGVGKT +S+ LA L Sbjct: 687 VIGQDDAVVAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKALAELLF 740 Query: 79 A---PFIKVEVTKFTE-----------IGYVG 96 I++++++F E GYVG Sbjct: 741 GEEDALIRLDMSEFKEEHTVSKLIGAPPGYVG 772 >gi|108755190|emb|CAK32582.1| putative ATP-dependent Zn protease [uncultured organism] Length = 641 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 187 LPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241 >gi|91089723|ref|XP_975024.1| PREDICTED: similar to no mitochondrial derivative CG5395-PA [Tribolium castaneum] gi|270011311|gb|EFA07759.1| hypothetical protein TcasGA2_TC005313 [Tribolium castaneum] Length = 368 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 39 RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 +R++L AD + P+ +LL GP G GKT I++ A+ AG FI ++++ T+ Y Sbjct: 113 QRKELFADSQLTTAPRGVLLHGPPGCGKTLIAKATAKEAGTRFINLDLSILTDKWY 168 >gi|148229003|ref|NP_001083300.1| proteasome 26S ATPase subunit 4 isoform 1 [Xenopus laevis] gi|37994750|gb|AAH60362.1| Psmc4 protein [Xenopus laevis] Length = 420 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 7/108 (6%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 LT + P + S++ I +Q+ + AV + L + +Q+ D P+ +L+ GP Sbjct: 156 LTADQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYGPP 210 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 211 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 256 >gi|83774711|dbj|BAE64834.1| unnamed protein product [Aspergillus oryzae] Length = 394 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 123 PSGVLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSN------KLVNAVFS 176 Query: 113 IVRE 116 + R+ Sbjct: 177 LARK 180 >gi|330993781|ref|ZP_08317713.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1] gi|329759049|gb|EGG75561.1| ClpA-like protein [Gluconacetobacter sp. SXCC-1] Length = 775 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L + GQ A A+ A++ A LRD P N L GPTGVGKT Sbjct: 457 RSLERDLKGMVYGQDKAIEALTAAIKLSR------AGLRDPEKPIGNYLFSGPTGVGKTE 510 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G I+ +++++ E GYVG + ++ D +D Sbjct: 511 VAKQLASTLGIELIRFDMSEYMERHSISRLIGAPPGYVGFDQGGLLTDAID 561 >gi|327285994|ref|XP_003227716.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 2 [Anolis carolinensis] Length = 387 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 121 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 175 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 176 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 223 >gi|269101906|ref|ZP_06154603.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268161804|gb|EEZ40300.1| ClpB protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 857 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHRRVIGQNEAVEAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A + +++++++F E V R V Sbjct: 619 ANFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|302530766|ref|ZP_07283108.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4] gi|302439661|gb|EFL11477.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4] Length = 849 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 511 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|256852016|ref|ZP_05557403.1| cell division protein [Lactobacillus jensenii 27-2-CHN] gi|260661415|ref|ZP_05862328.1| cell division protein [Lactobacillus jensenii 115-3-CHN] gi|256615428|gb|EEU20618.1| cell division protein [Lactobacillus jensenii 27-2-CHN] gi|260547870|gb|EEX23847.1| cell division protein [Lactobacillus jensenii 115-3-CHN] Length = 715 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 229 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 285 >gi|284037881|ref|YP_003387811.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74] gi|283817174|gb|ADB39012.1| ATP-dependent metalloprotease FtsH [Spirosoma linguale DSM 74] Length = 676 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RDL A Sbjct: 230 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEM-FVGVGAAR-VRDLFKQA 286 >gi|238899016|ref|YP_002924698.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466776|gb|ACQ68550.1| ATP-dependent zinc-metallo protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 641 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 21/101 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 +E VSEL +Y LR R Q+L + P ILLVGP G GKT + Sbjct: 161 KEEVSELVQY--------------LREPGRFQKLGGKI-----PTGILLVGPPGTGKTLL 201 Query: 70 SRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 ++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 202 AKAIAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFEKA 240 >gi|262200860|ref|YP_003272068.1| ATPase AAA [Gordonia bronchialis DSM 43247] gi|262084207|gb|ACY20175.1| ATPase AAA-2 domain protein [Gordonia bronchialis DSM 43247] Length = 848 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|242309032|ref|ZP_04808187.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT 98-5489] gi|239524456|gb|EEQ64322.1| atpase-ATP-dependent zn protease [Helicobacter pullorum MIT 98-5489] Length = 574 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LLVGP GVGKT I++ LA A PF F +I Y G +++ + Sbjct: 208 LPRGVLLVGPPGVGKTLIAKALAGEAKVPFFYQSGASFVQI-YAGMGAKRVHDLFTKAKL 266 Query: 112 NI 113 N+ Sbjct: 267 NV 268 >gi|91794212|ref|YP_563863.1| ATPase AAA-2 [Shewanella denitrificans OS217] gi|91716214|gb|ABE56140.1| ATPase AAA-2 [Shewanella denitrificans OS217] Length = 862 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L +IGQ +A AV+ A+R R R A L D P + L +GPTGVGKT + Sbjct: 561 QMESALHERVIGQSEAVEAVSNAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTEL 614 Query: 70 SRRLARL---AGAPFIKVEVTKFTEIGYVGRNV 99 + LA+ A +++++++F E V R V Sbjct: 615 CKSLAKFLFDTEAALVRIDMSEFMEKHSVSRLV 647 >gi|51599040|ref|YP_073228.1| cell division protein [Borrelia garinii PBi] gi|51573611|gb|AAU07636.1| cell division protein [Borrelia garinii PBi] Length = 639 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|21673136|ref|NP_661201.1| cell division protein FtsH [Chlorobium tepidum TLS] gi|21646212|gb|AAM71543.1| cell division protein FtsH [Chlorobium tepidum TLS] Length = 659 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + F E+ +VG + +RDL + A Sbjct: 241 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 297 >gi|49474666|ref|YP_032708.1| cell division protein ftsH [Bartonella quintana str. Toulouse] gi|49240170|emb|CAF26634.1| Cell division protein ftsH [Bartonella quintana str. Toulouse] Length = 717 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|116519|sp|P05444|CLPA_RHOBL RecName: Full=ClpA homolog protein gi|45972|emb|CAA77308.1| URF 2 [Rhodobacter blasticus] Length = 793 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L R + GQ A A++ +++ A LR+ P N L GPTGVGKT Sbjct: 480 RDLERTLKRLVFGQDKAIEALSASIKLAR------AGLREPEKPIGNYLFTGPTGVGKTE 533 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 534 VAKQLAATLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVDQHPHCV 590 >gi|319407717|emb|CBI81365.1| cell division protein FtsH [Bartonella sp. 1-1C] Length = 696 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|298491770|ref|YP_003721947.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298233688|gb|ADI64824.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 628 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGSPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKA 261 >gi|261325733|ref|ZP_05964930.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33] gi|261301713|gb|EEY05210.1| ATP-dependent metalloprotease FtsH [Brucella neotomae 5K33] Length = 644 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|239832778|ref|ZP_04681107.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG 3301] gi|239825045|gb|EEQ96613.1| ATP-dependent metalloprotease FtsH [Ochrobactrum intermedium LMG 3301] Length = 651 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|238855043|ref|ZP_04645371.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3] gi|260664827|ref|ZP_05865678.1| cell division protein [Lactobacillus jensenii SJ-7A-US] gi|282934829|ref|ZP_06340063.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|313472619|ref|ZP_07813108.1| cell division protein FtsH [Lactobacillus jensenii 1153] gi|238832287|gb|EEQ24596.1| ATP-dependent metallopeptidase HflB [Lactobacillus jensenii 269-3] gi|260561310|gb|EEX27283.1| cell division protein [Lactobacillus jensenii SJ-7A-US] gi|281301101|gb|EFA93411.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|313448962|gb|EEQ68431.2| cell division protein FtsH [Lactobacillus jensenii 1153] Length = 708 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281 >gi|219684938|ref|ZP_03539879.1| cell division protein FtsH [Borrelia garinii PBr] gi|219671676|gb|EED28732.1| cell division protein FtsH [Borrelia garinii PBr] Length = 639 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|145640973|ref|ZP_01796555.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274487|gb|EDK14351.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 708 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ++A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 417 ELHKRVIGQEEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 470 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 471 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 499 >gi|110834146|ref|YP_693005.1| ATP-dependent Clp protease, ATP-binding subunitclpa [Alcanivorax borkumensis SK2] gi|110647257|emb|CAL16733.1| ATP-dependent Clp protease, ATP-binding subunitClpA [Alcanivorax borkumensis SK2] Length = 755 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S +E++ L+R + GQ +A ++ A++ A L+ E P + + GPT Sbjct: 446 SDKELLRNLERDLKMTVFGQDEAIDTISAAIKLSR------AGLKGEHKPIGSFMFAGPT 499 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT +SR+LAR G ++ +++++ E V R Sbjct: 500 GVGKTEVSRQLARALGVELVRFDMSEYMERHTVSR 534 >gi|77360664|ref|YP_340239.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Pseudoalteromonas haloplanktis TAC125] gi|76875575|emb|CAI86796.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Pseudoalteromonas haloplanktis TAC125] Length = 753 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S +E + LDR + GQ + A+ A+R + L +E P + L GPT Sbjct: 446 SDKETLKNLDRNLKMLVFGQDQSIDALTSAIRLSR------SGLANEEKPVGSFLFAGPT 499 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT ++++LA+ G FI+ +++++ E + R Sbjct: 500 GVGKTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534 >gi|54022379|ref|YP_116621.1| putative Clp protease [Nocardia farcinica IFM 10152] gi|54013887|dbj|BAD55257.1| putative Clp protease [Nocardia farcinica IFM 10152] Length = 851 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 A 74 A Sbjct: 564 A 564 >gi|300859188|ref|YP_003784171.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis FRC41] gi|300686642|gb|ADK29564.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis FRC41] gi|302331444|gb|ADL21638.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis 1002] Length = 885 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 565 FAGPSGVGKTELSKALA 581 >gi|289740993|gb|ADD19244.1| AAA+-type ATPase [Glossina morsitans morsitans] Length = 379 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70 E ++ LD I Q+ + +V + +R+R L + + PK +LL GP G GKT I+ Sbjct: 97 EDIAGLDNVI---QELRESVVLPVRHR----GLLSHSKLWQAPKGVLLHGPPGCGKTLIA 149 Query: 71 RRLARLAGAPFIKVEVTKFTEIGY 94 + A+ AG FI ++V+ T+ Y Sbjct: 150 KATAKEAGMRFINLDVSMLTDKWY 173 >gi|284006662|emb|CBA71924.1| ATP-dependent metalloprotease [Arsenophonus nasoniae] Length = 651 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 175 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFEQA 244 >gi|305680627|ref|ZP_07403435.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Corynebacterium matruchotii ATCC 14266] gi|305660158|gb|EFM49657.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Corynebacterium matruchotii ATCC 14266] Length = 890 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 514 FKLTEEESSRLLNMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 568 FAGPSGVGKTELSKALA 584 >gi|238810162|dbj|BAH69952.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 708 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MP ILL GPTG GKT +++ A A PF + + F E+ YVG +++ Sbjct: 252 MPHGILLGGPTGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRV 301 >gi|225022124|ref|ZP_03711316.1| hypothetical protein CORMATOL_02157 [Corynebacterium matruchotii ATCC 33806] gi|224945057|gb|EEG26266.1| hypothetical protein CORMATOL_02157 [Corynebacterium matruchotii ATCC 33806] Length = 890 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 514 FKLTEEESSRLLNMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 567 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 568 FAGPSGVGKTELSKALA 584 >gi|222149667|ref|YP_002550624.1| metalloprotease [Agrobacterium vitis S4] gi|221736649|gb|ACM37612.1| metalloprotease [Agrobacterium vitis S4] Length = 681 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 229 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 285 >gi|195330288|ref|XP_002031836.1| GM26216 [Drosophila sechellia] gi|194120779|gb|EDW42822.1| GM26216 [Drosophila sechellia] Length = 389 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 143 IQKQEVREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RD+ +A Sbjct: 198 FIRVVGSEFVQ-KYLGEG-PRMVRDIFRLA 225 >gi|163845271|ref|YP_001622926.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445] gi|163675994|gb|ABY40104.1| ATP-dependent metalloprotease FtsH [Brucella suis ATCC 23445] Length = 644 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|168015662|ref|XP_001760369.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688383|gb|EDQ74760.1| predicted protein [Physcomitrella patens subsp. patens] Length = 637 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 18/119 (15%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ IL+ GP G GKT ++R +AR +G PF+ +F E G ++I Sbjct: 161 LPRGILISGPPGTGKTLLARAIARESGLPFVFASGAEFVE-SSTGNGSDKIFDIFFTARA 219 Query: 112 NIVRESRRDEVREQASINAEERILDALVGKTATSNT--REVFRKKLR--DGEISDKEID 166 N DE+ DAL GK + R F++ L DGE D +++ Sbjct: 220 NAPSFVFIDEI-------------DALAGKNVNDDAERRATFQQLLAELDGEPDDTDVN 265 >gi|1709797|sp|P54775|PRS6B_MOUSE RecName: Full=26S protease regulatory subunit 6B; AltName: Full=26S proteasome AAA-ATPase subunit RPT3; AltName: Full=CIP21; AltName: Full=MB67-interacting protein; AltName: Full=MIP224; AltName: Full=Proteasome 26S subunit ATPase 4; AltName: Full=Tat-binding protein 7; Short=TBP-7 gi|1196528|gb|AAA88243.1| ATPase [Mus musculus] gi|10697240|dbj|BAB16348.1| proteasomal ATPase [Mus musculus] Length = 418 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|291520389|emb|CBK75610.1| C-terminal, D2-small domain, of ClpB protein./AAA domain (Cdc48 subfamily) [Butyrivibrio fibrisolvens 16/4] Length = 505 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 21/102 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R+I S L + +IGQ++A AVA A+R R R L+++ P + L +GPTGVGKT Sbjct: 197 RKIESVLHKRVIGQEEAVSAVARAVR-RGR-----VGLKEKGRPIGSFLFLGPTGVGKTE 250 Query: 69 ISRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96 IS+ LA + I+V+++++ E GYVG Sbjct: 251 ISKALAEAVFGTESSMIRVDMSEYMEKHSVSKMIGSPPGYVG 292 >gi|269137757|ref|YP_003294457.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202] gi|267983417|gb|ACY83246.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202] gi|304557814|gb|ADM40478.1| Cell division protein FtsH [Edwardsiella tarda FL6-60] Length = 646 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|300023923|ref|YP_003756534.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans ATCC 51888] gi|299525744|gb|ADJ24213.1| ATP-dependent metalloprotease FtsH [Hyphomicrobium denitrificans ATCC 51888] Length = 651 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 192 IPRGCLLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 248 >gi|161619621|ref|YP_001593508.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365] gi|256370100|ref|YP_003107611.1| cell division protein FtsH [Brucella microti CCM 4915] gi|260568778|ref|ZP_05839246.1| FtsH protein [Brucella suis bv. 4 str. 40] gi|261219281|ref|ZP_05933562.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1] gi|261315941|ref|ZP_05955138.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis M163/99/10] gi|261316197|ref|ZP_05955394.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94] gi|261322342|ref|ZP_05961539.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1] gi|261750847|ref|ZP_05994556.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513] gi|261754100|ref|ZP_05997809.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686] gi|261757345|ref|ZP_06001054.1| cell division protein [Brucella sp. F5/99] gi|265984709|ref|ZP_06097444.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13] gi|265987260|ref|ZP_06099817.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis M292/94/1] gi|294850944|ref|ZP_06791620.1| cell division protease FtsH [Brucella sp. NVSL 07-0026] gi|306837847|ref|ZP_07470709.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653] gi|161336432|gb|ABX62737.1| ATP-dependent metalloprotease FtsH [Brucella canis ATCC 23365] gi|256000263|gb|ACU48662.1| cell division protein FtsH [Brucella microti CCM 4915] gi|260154162|gb|EEW89244.1| FtsH protein [Brucella suis bv. 4 str. 40] gi|260924370|gb|EEX90938.1| ATP-dependent metalloprotease FtsH [Brucella ceti M13/05/1] gi|261295032|gb|EEX98528.1| ATP-dependent metalloprotease FtsH [Brucella ceti M644/93/1] gi|261295420|gb|EEX98916.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis B2/94] gi|261304967|gb|EEY08464.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis M163/99/10] gi|261737329|gb|EEY25325.1| cell division protein [Brucella sp. F5/99] gi|261740600|gb|EEY28526.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 5 str. 513] gi|261743853|gb|EEY31779.1| ATP-dependent metalloprotease FtsH [Brucella suis bv. 3 str. 686] gi|264659457|gb|EEZ29718.1| ATP-dependent metalloprotease FtsH [Brucella pinnipedialis M292/94/1] gi|264663301|gb|EEZ33562.1| ATP-dependent metalloprotease FtsH [Brucella sp. 83/13] gi|294821587|gb|EFG38583.1| cell division protease FtsH [Brucella sp. NVSL 07-0026] gi|306407086|gb|EFM63303.1| ATP-dependent metalloprotease FtsH [Brucella sp. NF 2653] Length = 644 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia] Length = 647 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK ILLVGP G GKT ++R LA AG F ++F E+ +VG Sbjct: 249 LPKGILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEM-FVG 292 >gi|110680700|ref|YP_683707.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter denitrificans OCh 114] gi|109456816|gb|ABG33021.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter denitrificans OCh 114] Length = 773 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|91202702|emb|CAJ72341.1| strongly similar to ATP-dependent zinc-metalloprotease ftsH involved in cell division [Candidatus Kuenenia stuttgartiensis] Length = 620 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 198 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFNMSGSEFVEM-FVGVGAAR-VRDLFNQA 254 >gi|62290563|ref|YP_222356.1| cell division protein FtsH FtsH [Brucella abortus bv. 1 str. 9-941] gi|82700479|ref|YP_415053.1| peptidase M41 [Brucella melitensis biovar Abortus 2308] gi|189024783|ref|YP_001935551.1| FtsH, cell division protein FtsH [Brucella abortus S19] gi|260547192|ref|ZP_05822930.1| FtsH protein [Brucella abortus NCTC 8038] gi|260755391|ref|ZP_05867739.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str. 870] gi|260758612|ref|ZP_05870960.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str. 292] gi|260884407|ref|ZP_05896021.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str. C68] gi|62196695|gb|AAX74995.1| FtsH, cell division protein FtsH [Brucella abortus bv. 1 str. 9-941] gi|82616580|emb|CAJ11659.1| Peptidase M41:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region:AAA-protein subdomain:ATP-dependent [Brucella melitensis biovar Abortus 2308] gi|189020355|gb|ACD73077.1| FtsH, cell division protein FtsH [Brucella abortus S19] gi|260095557|gb|EEW79435.1| FtsH protein [Brucella abortus NCTC 8038] gi|260668930|gb|EEX55870.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 4 str. 292] gi|260675499|gb|EEX62320.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 6 str. 870] gi|260873935|gb|EEX81004.1| ATP-dependent metalloprotease FtsH [Brucella abortus bv. 9 str. C68] Length = 644 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|330835879|ref|YP_004410607.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4] gi|329568018|gb|AEB96123.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4] Length = 391 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%) Query: 24 QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83 Q+ K V + L+ R +L DL + PK +LL GP G GKT +++ +A + A FI Sbjct: 143 QEIKEVVELPLK----RPELFKDL-GIIPPKGVLLYGPPGTGKTMLAKAVATESKAAFIH 197 Query: 84 VEVTKFTEIGYVGRNVEQIIRDLVDVA 110 V ++F + +VG +++RDL ++A Sbjct: 198 VVASEFAQ-KFVGEGA-RVVRDLFELA 222 >gi|308277132|gb|ADO27031.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis I19] Length = 885 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 565 FAGPSGVGKTELSKALA 581 >gi|307822306|ref|ZP_07652538.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter tundripaludum SV96] gi|307736872|gb|EFO07717.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylobacter tundripaludum SV96] Length = 757 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLA 74 L + GQ +A A+A A++ A LRD + + L GPTGVGKT ++R+LA Sbjct: 457 LKMLVFGQDEAISALASAIKLSR------AGLRDTQKTIGSFLFAGPTGVGKTEVTRQLA 510 Query: 75 RLAGAPFIKVEVTKFTEIGYVGR 97 ++ G I+ +++++ E V R Sbjct: 511 KVLGVELIRFDMSEYMERHTVSR 533 >gi|307719021|ref|YP_003874553.1| chaperone ClpB [Spirochaeta thermophila DSM 6192] gi|306532746|gb|ADN02280.1| chaperone ClpB [Spirochaeta thermophila DSM 6192] Length = 870 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 9/61 (14%) Query: 16 LDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILL-VGPTGVGKTAISRRL 73 L R +IGQ++A RAVA A+R NR + L D P + L +GPTGVGKT ++R L Sbjct: 573 LGRRVIGQEEAIRAVADAIRRNR-------SGLSDPRRPMGVFLFLGPTGVGKTELARTL 625 Query: 74 A 74 A Sbjct: 626 A 626 >gi|302206878|gb|ADL11220.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium pseudotuberculosis C231] Length = 885 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 9/77 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPRRPSGSFI 564 Query: 58 LVGPTGVGKTAISRRLA 74 GP+GVGKT +S+ LA Sbjct: 565 FAGPSGVGKTELSKALA 581 >gi|256045302|ref|ZP_05448196.1| cell division protein FtsH [Brucella melitensis bv. 1 str. Rev.1] gi|256114260|ref|ZP_05455005.1| cell division protein FtsH [Brucella melitensis bv. 3 str. Ether] Length = 653 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|238918418|ref|YP_002931932.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146] gi|238867986|gb|ACR67697.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146] Length = 649 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LRDPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|237816069|ref|ZP_04595065.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A] gi|254689860|ref|ZP_05153114.1| cell division protein FtsH [Brucella abortus bv. 6 str. 870] gi|254730895|ref|ZP_05189473.1| cell division protein FtsH [Brucella abortus bv. 4 str. 292] gi|256258114|ref|ZP_05463650.1| cell division protein FtsH [Brucella abortus bv. 9 str. C68] gi|237788732|gb|EEP62944.1| ATP-dependent metalloprotease FtsH [Brucella abortus str. 2308 A] Length = 653 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 198 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 254 >gi|282933688|ref|ZP_06339046.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|297205112|ref|ZP_06922508.1| cell division protein FtsH [Lactobacillus jensenii JV-V16] gi|281302178|gb|EFA94422.1| cell division protease FtsH [Lactobacillus jensenii 208-1] gi|297149690|gb|EFH29987.1| cell division protein FtsH [Lactobacillus jensenii JV-V16] Length = 711 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT ++R +A AG PF + + F E+ +VG + +RDL + A Sbjct: 225 IPSGVLLEGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA 281 >gi|169627650|ref|YP_001701299.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium abscessus ATCC 19977] gi|169239617|emb|CAM60645.1| Probable ATP-dependent Clp protease ATP-binding subunit [Mycobacterium abscessus] Length = 844 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPRRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|154508553|ref|ZP_02044195.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC 17982] gi|153798187|gb|EDN80607.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC 17982] Length = 678 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A A APF + ++F E+ YVG + +R+L + A Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264 >gi|120406306|ref|YP_956135.1| ATPase [Mycobacterium vanbaalenii PYR-1] gi|119959124|gb|ABM16129.1| ATPase AAA-2 domain protein [Mycobacterium vanbaalenii PYR-1] Length = 847 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|4336198|gb|AAD17691.1| ATP-dependent protease ClpE [Listeria monocytogenes] Length = 728 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 21/92 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 434 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 487 Query: 78 GA--PFIKVEVTKFTE-----------IGYVG 96 G +I++++++F E GYVG Sbjct: 488 GTSEAWIRLDMSEFMEKHSISKLIGSPPGYVG 519 >gi|71066293|ref|YP_265020.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus 273-4] gi|71039278|gb|AAZ19586.1| membrane protease FtsH catalytic subunit [Psychrobacter arcticus 273-4] Length = 628 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|23502549|ref|NP_698676.1| cell division protein FtsH [Brucella suis 1330] gi|23348549|gb|AAN30591.1| cell division protein FtsH [Brucella suis 1330] Length = 644 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|326539412|gb|ADZ87627.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M5-90] Length = 651 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252 >gi|297248963|ref|ZP_06932671.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196] gi|297174096|gb|EFH33453.1| cell division protease FtsH [Brucella abortus bv. 5 str. B3196] Length = 651 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252 >gi|298292990|ref|YP_003694929.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506] gi|296929501|gb|ADH90310.1| ATP-dependent metalloprotease FtsH [Starkeya novella DSM 506] Length = 639 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|291234534|ref|XP_002737206.1| PREDICTED: fidgetin-like protein 1-like [Saccoglossus kowalevskii] Length = 687 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 446 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 501 >gi|255027682|ref|ZP_05299668.1| ATP-dependent protease [Listeria monocytogenes FSL J2-003] Length = 439 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 152 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 205 Query: 78 GA--PFIKVEVTKFTE-----------IGYVGR 97 G I++++++F E GYVG Sbjct: 206 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 238 >gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23] gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23] Length = 350 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 10/94 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++ K R V L+N + +++ A + PK +LLVG G GKT +++ +A Sbjct: 174 VAGQEEVKQELREVVEFLKNPKKFEKIGAKI-----PKGVLLVGSPGTGKTLLAKAVAGE 228 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG F + + F E+ +VG + +RDL D A Sbjct: 229 AGVSFFHMSGSDFVEM-FVGVGASR-VRDLFDNA 260 >gi|207109416|ref|ZP_03243578.1| cell division protein [Helicobacter pylori HPKX_438_CA4C1] Length = 192 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 49 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 105 >gi|163732301|ref|ZP_02139747.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter litoralis Och 149] gi|161394599|gb|EDQ18922.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter litoralis Och 149] Length = 773 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLEGSLKRVVFGQNAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|148653389|ref|YP_001280482.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Psychrobacter sp. PRwf-1] gi|148572473|gb|ABQ94532.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Psychrobacter sp. PRwf-1] Length = 854 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 18/94 (19%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L+R + GQ +A + ++ A++ R A L+ P + + GPTGVGKT +S++L Sbjct: 534 DLNRLVFGQDEAIKTLSDAIK--LSR----AGLKSADKPIGSFMFAGPTGVGKTEVSKQL 587 Query: 74 ARLAGAPFIKVEVTKFTEI-----------GYVG 96 A L G I+ +++++ E GYVG Sbjct: 588 ANLMGIELIRFDMSEYMEAHTASRLIGAPPGYVG 621 >gi|39794661|gb|AAH63530.1| ATAD1 protein [Homo sapiens] Length = 330 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 95 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 136 >gi|93006844|ref|YP_581281.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis K5] gi|92394522|gb|ABE75797.1| ATP-dependent metalloprotease FtsH [Psychrobacter cryohalolentis K5] Length = 628 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ IL+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPRGILMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|327285992|ref|XP_003227715.1| PREDICTED: 26S protease regulatory subunit 6B-like isoform 1 [Anolis carolinensis] Length = 418 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|325526643|gb|EGD04184.1| cell division protease [Burkholderia sp. TJI49] Length = 494 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|320451090|ref|YP_004203186.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01] gi|320151259|gb|ADW22637.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01] Length = 861 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ++A RAVA A+R R R A L+D P + L +GPTGVGKT +++ L Sbjct: 562 ELHKRVVGQEEAIRAVADAIR-RAR-----AGLKDPNRPIGSFLFLGPTGVGKTELAKTL 615 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGR 97 A +++++T++ E V R Sbjct: 616 AATLFDTEEAMVRIDMTEYMEKHAVSR 642 >gi|306841410|ref|ZP_07474112.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2] gi|306288516|gb|EFM59868.1| ATP-dependent metalloprotease FtsH [Brucella sp. BO2] Length = 594 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 139 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 195 >gi|285025947|dbj|BAI67908.1| ClpB protein [Acetobacter pasteurianus] Length = 871 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQ+ A +AV+ A+R R R A L+D P + L +GPTGVGKT +++ L Sbjct: 569 ELRKSVVGQEQALKAVSDAVR-RAR-----AGLQDPNRPIGSFLFLGPTGVGKTELTKAL 622 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 AR +++++++F E V R Sbjct: 623 ARFLFDDDKALLRIDMSEFMEKHAVAR 649 >gi|156386834|ref|XP_001634116.1| predicted protein [Nematostella vectensis] gi|156221195|gb|EDO42053.1| predicted protein [Nematostella vectensis] Length = 315 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG F+ ++V+ T+ Y Sbjct: 118 PKGVLLHGPPGCGKTMIAKATAKEAGCRFLNLQVSSLTDKWY 159 >gi|331090013|ref|ZP_08338903.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402927|gb|EGG82493.1| hypothetical protein HMPREF1025_02486 [Lachnospiraceae bacterium 3_1_46FAA] Length = 675 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 213 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 267 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 268 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 301 >gi|319777781|ref|YP_004137432.1| cell division protein ftsh [Mycoplasma fermentans M64] gi|318038856|gb|ADV35055.1| Cell division protein FtsH [Mycoplasma fermentans M64] Length = 697 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 MP ILL GPTG GKT +++ A A PF + + F E+ YVG +++ Sbjct: 241 MPHGILLGGPTGTGKTLLAKATAGEANVPFYFISASNFVEM-YVGLGAKRV 290 >gi|293191262|ref|ZP_06609169.1| cell division protein FtsH [Actinomyces odontolyticus F0309] gi|292820587|gb|EFF79557.1| cell division protein FtsH [Actinomyces odontolyticus F0309] Length = 678 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A A APF + ++F E+ YVG + +R+L + A Sbjct: 208 IPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMEL-YVGVGASR-VRELFERA 264 >gi|292493674|ref|YP_003529113.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] gi|291582269|gb|ADE16726.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4] Length = 639 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + P+ +L+VGP G GKT ++R +A A PF + + F E+ Sbjct: 172 LRDPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 225 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 226 FVGVGASR-VRDMFENA 241 >gi|237752882|ref|ZP_04583362.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC BAA-430] gi|229375149|gb|EEO25240.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC BAA-430] Length = 555 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG GVGKT I++ LA A PF F +I YVG ++ +RDL Sbjct: 191 LPKGVLLVGVPGVGKTLIAKALAGEAQVPFFYQSGASFVQI-YVGMGAKR-VRDL 243 >gi|188588998|ref|YP_001922412.1| putative cell division protease FtsH [Clostridium botulinum E3 str. Alaska E43] gi|188499279|gb|ACD52415.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E3 str. Alaska E43] Length = 698 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L R ++ A L PK LLVGP G GKT I++ +A Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226 Query: 77 AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114 A PF + + F E +G V ++ ++ V A I+ Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCII 266 >gi|153805576|ref|YP_001382152.1| cell division protein [Leptosira terrestris] gi|134270107|gb|ABO69296.1| cell division protein [Leptosira terrestris] Length = 2570 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 10/62 (16%) Query: 40 RQQLPADLRDELM----------PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKF 89 + Q + R+ELM PK ILL GP G+GKT +SR LA AG P I F Sbjct: 1769 KNQRQINKREELMHMKHSINFIVPKAILLTGPPGIGKTYLSRALAAEAGVPIISRSGGDF 1828 Query: 90 TE 91 T+ Sbjct: 1829 TK 1830 >gi|154483319|ref|ZP_02025767.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC 27560] gi|149735829|gb|EDM51715.1| hypothetical protein EUBVEN_01020 [Eubacterium ventriosum ATCC 27560] Length = 607 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILL GP G GKT +++ A AG PF + + F E+ +VG + +RDL Sbjct: 183 IPKGILLEGPPGTGKTLLAKATAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 235 >gi|118472509|ref|YP_890312.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium smegmatis str. MC2 155] gi|118173796|gb|ABK74692.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium smegmatis str. MC2 155] Length = 848 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|21740032|emb|CAD39033.1| hypothetical protein [Homo sapiens] Length = 315 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 80 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 121 >gi|17986626|ref|NP_539260.1| cell division protein FTSH [Brucella melitensis bv. 1 str. 16M] gi|17982240|gb|AAL51524.1| cell division protein ftsh [Brucella melitensis bv. 1 str. 16M] Length = 651 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 196 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 252 >gi|225853147|ref|YP_002733380.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457] gi|265991727|ref|ZP_06104284.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str. Rev.1] gi|265995564|ref|ZP_06108121.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str. Ether] gi|265999343|ref|ZP_05465893.2| FtsH [Brucella melitensis bv. 2 str. 63/9] gi|225641512|gb|ACO01426.1| ATP-dependent metalloprotease FtsH [Brucella melitensis ATCC 23457] gi|262766848|gb|EEZ12466.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 3 str. Ether] gi|263002683|gb|EEZ15086.1| ATP-dependent metalloprotease FtsH [Brucella melitensis bv. 1 str. Rev.1] gi|263093360|gb|EEZ17429.1| FtsH [Brucella melitensis bv. 2 str. 63/9] Length = 644 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|225442523|ref|XP_002278786.1| PREDICTED: similar to cell division protein FtsH-like [Vitis vinifera] Length = 888 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P ILL GP GVGKT +++ +A AG F + ++F EI YVG Sbjct: 454 IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVG 497 >gi|254429405|ref|ZP_05043112.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax sp. DG881] gi|196195574|gb|EDX90533.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Alcanivorax sp. DG881] Length = 754 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 11/95 (11%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPT 62 S +E++ L+R + GQ +A ++ A++ A L+ E P + + GPT Sbjct: 445 SDKELLRNLERDLKMTVFGQDEAIDTISAAIKLSR------AGLKGEHKPIGSFMFAGPT 498 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 GVGKT +SR+LAR G ++ +++++ E V R Sbjct: 499 GVGKTEVSRQLARALGVELVRFDMSEYMERHTVSR 533 >gi|183985068|ref|YP_001853359.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium marinum M] gi|183178394|gb|ACC43504.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium marinum M] Length = 848 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|78358454|ref|YP_389903.1| FtsH-2 peptidase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220859|gb|ABB40208.1| membrane protease FtsH catalytic subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 627 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 189 IPKGVLLAGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 245 >gi|15827032|ref|NP_301295.1| ATP-dependent Clp protease [Mycobacterium leprae TN] gi|221229510|ref|YP_002502926.1| putative ATP-dependent Clp protease [Mycobacterium leprae Br4923] gi|13432105|sp|P24428|CLPC_MYCLE RecName: Full=Probable ATP-dependent Clp protease ATP-binding subunit gi|13092579|emb|CAC29743.1| putative ATP-dependent Clp protease [Mycobacterium leprae] gi|219932617|emb|CAR70328.1| putative ATP-dependent Clp protease [Mycobacterium leprae Br4923] Length = 848 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|66362372|ref|XP_628150.1| AFG1 ATpase family AAA ATpase [Cryptosporidium parvum Iowa II] gi|46227382|gb|EAK88317.1| predicted AFG1 ATpase family AAA ATpase [Cryptosporidium parvum Iowa II] Length = 719 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 I G ++AK+ + L++ R Q L A + PK LLVGP G GKT +++ +A Sbjct: 261 IAGMKEAKQEIYELVEFLKDPKRFQDLGAKI-----PKGALLVGPPGTGKTLLAKAVAGE 315 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F EI +VG + +R+L A Sbjct: 316 ANVPFFYISGSDFIEI-FVGMGASR-VRELFSQA 347 >gi|326409705|gb|ADZ66770.1| ATP-dependent metalloprotease FtsH [Brucella melitensis M28] Length = 644 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|315446238|ref|YP_004079117.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium sp. Spyr1] gi|315264541|gb|ADU01283.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium sp. Spyr1] Length = 847 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|325678810|ref|ZP_08158408.1| ATPase, AAA family [Ruminococcus albus 8] gi|324109314|gb|EGC03532.1| ATPase, AAA family [Ruminococcus albus 8] Length = 776 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 20/101 (19%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAI 69 R + E+ + IIGQ++A VA A++ R R Q L P + + VGPTGVGKT + Sbjct: 477 RNLKDEMSKRIIGQEEAVDKVAKAIK-RTRVQ-----LDKRRRPASFIFVGPTGVGKTEL 530 Query: 70 SRRLARL---AGAPFIKVEVTKFTE-----------IGYVG 96 + L A P I+++++++ E GYVG Sbjct: 531 VKVLGESLFDATEPLIRIDMSEYMEKHSVSKLIGSPPGYVG 571 >gi|289763775|ref|ZP_06523153.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis GM 1503] gi|289711281|gb|EFD75297.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis GM 1503] Length = 686 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|217031507|ref|ZP_03437012.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128] gi|216946707|gb|EEC25303.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128] Length = 550 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL+GP GVGKT I++ LA A PF +F + + GR +++ Sbjct: 193 FLPKGVLLIGPPGVGKTMIAKALASEARVPFFYEAGARFLKFMW-GRGAKKV 243 >gi|310946929|sp|Q4A5F0|FTSH_MYCS5 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|144575198|gb|AAZ44021.2| cell division protein FtsH [Mycoplasma synoviae 53] Length = 664 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91 L+N + QQ A MP ILL GP G GKT +++ A A PF V + F E Sbjct: 208 LKNPGKYQQSGAR-----MPHGILLGGPPGTGKTLLAKATAGEANVPFYFVSASSFVELF 262 Query: 92 IGYVGRNVEQIIRD 105 +G + V Q+I + Sbjct: 263 VGMGAKRVRQVISE 276 >gi|283850232|ref|ZP_06367521.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B] gi|283574258|gb|EFC22229.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. FW1012B] Length = 691 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237 >gi|240172840|ref|ZP_04751499.1| ClpC [Mycobacterium kansasii ATCC 12478] Length = 848 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|189184490|ref|YP_001938275.1| FtsH protein [Orientia tsutsugamushi str. Ikeda] gi|189181261|dbj|BAG41041.1| FtsH protein [Orientia tsutsugamushi str. Ikeda] Length = 627 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ + Q+L + PK LL+GP G GKT +++ +A A PF + + F E+ Sbjct: 175 LRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAGEANVPFFHISGSNFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFEQA 244 >gi|154505541|ref|ZP_02042279.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149] gi|153794199|gb|EDN76619.1| hypothetical protein RUMGNA_03078 [Ruminococcus gnavus ATCC 29149] Length = 606 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL Sbjct: 196 IPKGVLLEGPPGTGKTLLAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDL 248 >gi|124023532|ref|YP_001017839.1| ATP-dependent Clp protease Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. MIT 9303] gi|123963818|gb|ABM78574.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. MIT 9303] Length = 863 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL + +IGQ+ A +AVA A+ Q+ A L D P + L +GPTGVGKT +S+ Sbjct: 570 AELHQRVIGQEQAVQAVADAI------QRSRAGLSDPNRPIASFLFLGPTGVGKTELSKA 623 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGR 97 LA + A ++++++++ E V R Sbjct: 624 LASQLFDSEAALVRIDMSEYMEKHSVSR 651 >gi|118466434|ref|YP_879836.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium avium 104] gi|254773513|ref|ZP_05215029.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium avium subsp. avium ATCC 25291] gi|118167721|gb|ABK68618.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium avium 104] Length = 822 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 492 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 545 Query: 74 A 74 A Sbjct: 546 A 546 >gi|308232509|ref|ZP_07416289.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu001] gi|308371394|ref|ZP_07424826.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu003] gi|308372592|ref|ZP_07429192.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu004] gi|308373956|ref|ZP_07434280.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu006] gi|308374925|ref|ZP_07442106.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu007] gi|308376170|ref|ZP_07437892.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu008] gi|308378380|ref|ZP_07482390.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu009] gi|308379552|ref|ZP_07486731.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu010] gi|308380740|ref|ZP_07490948.2| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu011] gi|308213724|gb|EFO73123.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu001] gi|308328891|gb|EFP17742.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu003] gi|308332729|gb|EFP21580.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu004] gi|308343544|gb|EFP32395.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu006] gi|308348011|gb|EFP36862.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu007] gi|308351952|gb|EFP40803.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu008] gi|308352738|gb|EFP41589.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu009] gi|308356587|gb|EFP45438.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu010] gi|308360544|gb|EFP49395.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu011] Length = 827 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 492 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 545 Query: 74 A 74 A Sbjct: 546 A 546 >gi|302342199|ref|YP_003806728.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] gi|301638812|gb|ADK84134.1| ATP-dependent metalloprotease FtsH [Desulfarculus baarsii DSM 2075] Length = 652 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 194 IPKGVLLVGSPGTGKTLLARAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 246 >gi|300790533|ref|YP_003770824.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amycolatopsis mediterranei U32] gi|299800047|gb|ADJ50422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amycolatopsis mediterranei U32] Length = 831 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 490 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 543 Query: 74 A 74 A Sbjct: 544 A 544 >gi|291550705|emb|CBL26967.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14] Length = 728 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + + F E+ YVG + +RDL A Sbjct: 254 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 310 >gi|302527020|ref|ZP_07279362.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4] gi|302435915|gb|EFL07731.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4] Length = 831 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 511 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 564 Query: 74 A 74 A Sbjct: 565 A 565 >gi|118619352|ref|YP_907684.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium ulcerans Agy99] gi|118571462|gb|ABL06213.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium ulcerans Agy99] Length = 849 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|126437706|ref|YP_001073397.1| ATPase [Mycobacterium sp. JLS] gi|126237506|gb|ABO00907.1| ATPase AAA-2 domain protein [Mycobacterium sp. JLS] Length = 847 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|108801719|ref|YP_641916.1| ATPase AAA-2 [Mycobacterium sp. MCS] gi|119870870|ref|YP_940822.1| ATPase [Mycobacterium sp. KMS] gi|108772138|gb|ABG10860.1| ATPase AAA-2 [Mycobacterium sp. MCS] gi|119696959|gb|ABL94032.1| ATPase AAA-2 domain protein [Mycobacterium sp. KMS] Length = 847 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|145222022|ref|YP_001132700.1| ATPase [Mycobacterium gilvum PYR-GCK] gi|145214508|gb|ABP43912.1| ATPase AAA-2 domain protein [Mycobacterium gilvum PYR-GCK] Length = 847 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|312869843|ref|ZP_07729984.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3] gi|311094622|gb|EFQ52925.1| ATP-dependent metallopeptidase HflB [Lactobacillus oris PB013-T2-3] Length = 709 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 281 >gi|257057497|ref|YP_003135329.1| ATPase with chaperone activity, ATP-binding subunit [Saccharomonospora viridis DSM 43017] gi|256587369|gb|ACU98502.1| ATPase with chaperone activity, ATP-binding subunit [Saccharomonospora viridis DSM 43017] Length = 851 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 A 74 A Sbjct: 564 A 564 >gi|212550944|ref|YP_002309261.1| cell division protease FtsH [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549182|dbj|BAG83850.1| cell division protease FtsH [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 654 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 227 IPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGASR-VRDLFHQA 283 >gi|255936031|ref|XP_002559042.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583662|emb|CAP91677.1| Pc13g06080 [Penicillium chrysogenum Wisconsin 54-1255] Length = 419 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 P +LL GP G GKT +++ LA +GA FI + ++ TE Y N LV+ + Sbjct: 146 PSGVLLYGPPGCGKTMLAKALASESGACFINLHISTLTEKWYGDSN------KLVNAVFS 199 Query: 113 IVRE 116 + R+ Sbjct: 200 LARK 203 >gi|170591739|ref|XP_001900627.1| YME1 protein homolog [Brugia malayi] gi|158591779|gb|EDP30382.1| YME1 protein homolog, putative [Brugia malayi] Length = 673 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 17/95 (17%) Query: 22 GQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA---- 74 G +AK R + LR+ R QL A L PK +LLVGP G GKT +++ +A Sbjct: 188 GADEAKNELRGIVSYLRDPERYTQLGARL-----PKGVLLVGPPGTGKTLLAKAIAVVSV 242 Query: 75 ---RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 + PF + ++F E+ +VG+ + +RDL Sbjct: 243 SIQKAPAVPFFQASGSEFDEL-FVGQGARR-VRDL 275 >gi|156845993|ref|XP_001645885.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM 70294] gi|156116555|gb|EDO18027.1| hypothetical protein Kpol_1045p11 [Vanderwaltozyma polyspora DSM 70294] Length = 695 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+ GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL A Sbjct: 290 LPKGILITGPPGTGKTLLARATAGEAGVKFFMMSGSEFDEV-YVGVGAKR-IRDLFTEA 346 >gi|89064750|ref|XP_947602.1| PREDICTED: 26S protease regulatory subunit 6B-like [Homo sapiens] Length = 414 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 148 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 202 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 203 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 250 >gi|332185365|ref|ZP_08387113.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17] gi|332014343|gb|EGI56400.1| ATP-dependent chaperone ClpB [Sphingomonas sp. S17] Length = 859 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 10/82 (12%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLA- 77 +IGQ+DA RAV+ A+R R R A L+D P + L +GPTGVGKT +++ LA Sbjct: 571 VIGQEDAVRAVSTAVR-RAR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKALAEFLF 624 Query: 78 --GAPFIKVEVTKFTEIGYVGR 97 + +++++++F E V R Sbjct: 625 DDPSAMVRLDMSEFMEKHSVAR 646 >gi|288940240|ref|YP_003442480.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180] gi|288895612|gb|ADC61448.1| ATP-dependent metalloprotease FtsH [Allochromatium vinosum DSM 180] Length = 639 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RDL + A Sbjct: 187 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 243 >gi|239907210|ref|YP_002953951.1| cell division protein FtsH [Desulfovibrio magneticus RS-1] gi|239797076|dbj|BAH76065.1| cell division protein FtsH [Desulfovibrio magneticus RS-1] Length = 675 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGSPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237 >gi|110633726|ref|YP_673934.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Mesorhizobium sp. BNC1] gi|110284710|gb|ABG62769.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Chelativorans sp. BNC1] Length = 819 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 18/113 (15%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL R + GQ A A+A A++ A LR+ P + L GPTGVGKT ++++ Sbjct: 468 TELKRVVYGQDKAIEALASAIKLAR------AGLREPEKPIGSYLFSGPTGVGKTEVAKQ 521 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 522 LAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574 >gi|312795599|ref|YP_004028521.1| cell division protein ftsH [Burkholderia rhizoxinica HKI 454] gi|312167374|emb|CBW74377.1| Cell division protein ftsH (EC 3.4.24.-) [Burkholderia rhizoxinica HKI 454] Length = 630 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|251777715|ref|ZP_04820635.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082030|gb|EES47920.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 698 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L R ++ A L PK LLVGP G GKT I++ +A Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226 Query: 77 AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114 A PF + + F E +G V ++ ++ V A I+ Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVTKAPCII 266 >gi|253991508|ref|YP_003042864.1| ATP-dependent metalloprotease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638386|emb|CAR67008.1| atp-binding protein (ec 3.4.24.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782958|emb|CAQ86123.1| ATP-binding protein [Photorhabdus asymbiotica] Length = 653 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|169633632|ref|YP_001707368.1| ATP-binding protease component [Acinetobacter baumannii SDF] gi|169152424|emb|CAP01379.1| ATP-binding protease component [Acinetobacter baumannii] Length = 758 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A A+A A++ A L+ P + + GPTGVGKT ++++L Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 A+L G ++ +++++ E GYVG + ++ D + Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551 >gi|149181371|ref|ZP_01859868.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus sp. SG-1] gi|148850934|gb|EDL65087.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus sp. SG-1] Length = 700 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 19/158 (12%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 E+ S L+ +IGQ +A + V+ A+R R R A L++ P + L +GPTGVGKT + Sbjct: 407 ELQSNLNSQVIGQDEAVKTVSKAIR-RSR-----AGLKNRNRPIGSFLFIGPTGVGKTEL 460 Query: 70 SRRLAR-LAGA--PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 S+ LA+ L G I+++++++ E + I L+ V ++ E+ Sbjct: 461 SKTLAQELFGTAEAMIRLDMSEYME--------KHSISKLIGSPPGYVGHEEAGQLSEKV 512 Query: 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 N IL + K A + + +F + L DG ++D + Sbjct: 513 RRNPYSIILLDEIEK-AHPDVQHMFLQILEDGRLTDSQ 549 >gi|331699829|ref|YP_004336068.1| ATPase [Pseudonocardia dioxanivorans CB1190] gi|326954518|gb|AEA28215.1| ATPase AAA-2 domain protein [Pseudonocardia dioxanivorans CB1190] Length = 847 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRIIGQEDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 A 74 A Sbjct: 564 A 564 >gi|298245463|ref|ZP_06969269.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963] gi|297552944|gb|EFH86809.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963] Length = 746 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 10/92 (10%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + +L +++IGQ +A AVA A+R R R A L+D P + L +GPTGVGKT Sbjct: 429 RNLEQDLRKHVIGQDEAISAVARAIR-RSR-----AGLKDPKRPIGSFLFLGPTGVGKTE 482 Query: 69 ISRRLAR--LAGA-PFIKVEVTKFTEIGYVGR 97 +++ LA GA I+ +++++ E V R Sbjct: 483 LAKALAAELFGGADHIIRFDMSEYMEPHTVSR 514 >gi|227540962|ref|ZP_03971011.1| ATP-dependent protease, ATPase subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227183222|gb|EEI64194.1| ATP-dependent protease, ATPase subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 870 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 514 FKLTEEESSRLIHMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 567 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 568 FAGPSGVGKTELSKALAEF 586 >gi|225574400|ref|ZP_03783010.1| hypothetical protein RUMHYD_02469 [Blautia hydrogenotrophica DSM 10507] gi|225038402|gb|EEG48648.1| hypothetical protein RUMHYD_02469 [Blautia hydrogenotrophica DSM 10507] Length = 827 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 21/97 (21%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ++A AVA A++ R R L+D P + L +GPTGVGKT +S+ L Sbjct: 518 ELHRRVIGQEEAVTAVAQAVK-RGR-----VGLKDPARPIGSFLFLGPTGVGKTELSKAL 571 Query: 74 ARL---AGAPFIKVEVTKFTE-----------IGYVG 96 A I+V+++++ E GYVG Sbjct: 572 AEAVFGTEQAMIRVDMSEYMEKHSVSKLIGSPPGYVG 608 >gi|159895653|gb|ABX10437.1| neuroprotective protein 6 [Rattus norvegicus] Length = 303 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 68 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 109 >gi|12844202|dbj|BAB26274.1| unnamed protein product [Mus musculus] Length = 239 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 4 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 45 >gi|71894624|ref|YP_278732.1| cell division protein FtsH [Mycoplasma synoviae 53] Length = 669 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-- 91 L+N + QQ A MP ILL GP G GKT +++ A A PF V + F E Sbjct: 213 LKNPGKYQQSGAR-----MPHGILLGGPPGTGKTLLAKATAGEANVPFYFVSASSFVELF 267 Query: 92 IGYVGRNVEQIIRD 105 +G + V Q+I + Sbjct: 268 VGMGAKRVRQVISE 281 >gi|47208099|emb|CAF91931.1| unnamed protein product [Tetraodon nigroviridis] Length = 373 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L +A Sbjct: 133 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAIA 188 >gi|332973011|gb|EGK10950.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Psychrobacter sp. 1501(2011)] Length = 856 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 18/94 (19%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L+R + GQ +A + ++ A++ R A L+ P + + GPTGVGKT +S++L Sbjct: 536 DLNRLVFGQSEAIKTLSDAIK--LSR----AGLKSSDKPIGSFMFAGPTGVGKTEVSKQL 589 Query: 74 ARLAGAPFIKVEVTKFTEI-----------GYVG 96 A L G ++ +++++ E GYVG Sbjct: 590 ANLMGIELVRFDMSEYMEAHTASRLIGAPPGYVG 623 >gi|313157295|gb|EFR56720.1| ATP-dependent metallopeptidase HflB [Alistipes sp. HGB5] Length = 692 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF+ + + F E+ +VG + +RDL + A Sbjct: 219 IPKGALLVGPPGTGKTLLAKAVAGEANVPFLSISGSDFVEM-FVGVGASR-VRDLFEQA 275 >gi|304373318|ref|YP_003856527.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1] gi|304309509|gb|ADM21989.1| cell division protease FtsH [Mycoplasma hyorhinis HUB-1] Length = 726 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105 +PK ILL GP G GKT I++ A A PF + + F E+ YVG + V ++ +D Sbjct: 269 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 324 >gi|288574818|ref|ZP_06393175.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570559|gb|EFC92116.1| ATP-dependent metalloprotease FtsH [Dethiosulfovibrio peptidovorans DSM 11002] Length = 640 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R A A PF + F E+ +VG + +RDL + A Sbjct: 188 VPKGVLLLGPPGTGKTLLARACAGEAAVPFFSTSGSDFVEM-FVGVGASR-VRDLFEQA 244 >gi|254456778|ref|ZP_05070206.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Campylobacterales bacterium GD 1] gi|207085570|gb|EDZ62854.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Campylobacterales bacterium GD 1] Length = 859 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 12/89 (13%) Query: 14 SELDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISR 71 +EL+R +IGQ A AV+ A+ RN+ A L D P + L +GPTGVGKT ++ Sbjct: 568 AELNRDVIGQAKATHAVSRAIKRNK-------AGLSDANTPIGSFLFLGPTGVGKTQTAK 620 Query: 72 RLARL---AGAPFIKVEVTKFTEIGYVGR 97 LA+ + I+++++++ E V R Sbjct: 621 TLAKFLFDSEDSMIRIDMSEYMEKHAVSR 649 >gi|154505838|ref|ZP_02042576.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149] gi|153793856|gb|EDN76276.1| hypothetical protein RUMGNA_03379 [Ruminococcus gnavus ATCC 29149] Length = 696 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + + F E+ YVG + +RDL A Sbjct: 255 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311 >gi|148285170|ref|YP_001249260.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong] gi|146740609|emb|CAM81263.1| ATP-dependent metalloprotease [Orientia tsutsugamushi str. Boryong] Length = 627 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ + Q+L + PK LL+GP G GKT +++ +A A PF + + F E+ Sbjct: 175 LRDPGKFQKLGGKI-----PKGCLLIGPPGTGKTLLAKAIAGEANVPFFHISGSNFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFEQA 244 >gi|325117039|emb|CBZ52592.1| ATP-dependent chaperone ClpB, related [Neospora caninum Liverpool] Length = 970 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 12/87 (13%) Query: 16 LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 L +IGQ+DA +AVA A+ R R A L E MP + L +GPTGVGKT +++ L Sbjct: 583 LHSRVIGQEDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635 Query: 74 AR---LAGAPFIKVEVTKFTEIGYVGR 97 A + I++++++F+E V R Sbjct: 636 AAEMFHSEKNLIRIDMSEFSEAHSVSR 662 >gi|283780736|ref|YP_003371491.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] gi|283439189|gb|ADB17631.1| ATP-dependent metalloprotease FtsH [Pirellula staleyi DSM 6068] Length = 665 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT ++R +A AG P+ V ++F ++ +VG + +RDL A Sbjct: 234 VPKGVLLNGPPGTGKTLLARAVAGEAGVPYYSVSGSEFIQM-FVGVGASR-VRDLFRTA 290 >gi|262277486|ref|ZP_06055279.1| ATP-dependent metallopeptidase HflB [alpha proteobacterium HIMB114] gi|262224589|gb|EEY75048.1| ATP-dependent metallopeptidase HflB [alpha proteobacterium HIMB114] Length = 635 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT I+R +A A PF + + F E+ +VG + +RD+ + Sbjct: 185 IPKGALLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239 >gi|260587222|ref|ZP_05853135.1| cell division protein FtsH [Blautia hansenii DSM 20583] gi|260542417|gb|EEX22986.1| cell division protein FtsH [Blautia hansenii DSM 20583] Length = 638 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 182 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 236 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 237 AHVPFFSLSGSDFVEM-FVGVGASR-VRDLFEEA 268 >gi|207340393|gb|EDZ68757.1| YPR024Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 491 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 57 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 109 >gi|15843209|ref|NP_338246.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium tuberculosis CDC1551] gi|13883563|gb|AAK48060.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium tuberculosis CDC1551] Length = 848 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|328866591|gb|EGG14975.1| ATP-dependent metalloprotease [Dictyostelium fasciculatum] Length = 691 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ILL G G GKT ++R +A AG PF+ + F E Y+G ++ +R+L D+A Sbjct: 312 LPRGILLSGEPGTGKTLLARAIAGEAGVPFLYTSGSSFDE-KYIGVGAKR-VRELFDLA 368 >gi|317497135|ref|ZP_07955461.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] gi|316895545|gb|EFV17701.1| ATP-dependent metallopeptidase HflB [Lachnospiraceae bacterium 5_1_63FAA] Length = 615 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 196 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 248 >gi|306430649|emb|CBJ17071.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEASIPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|289572251|ref|ZP_06452478.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis K85] gi|289536682|gb|EFD41260.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis K85] Length = 586 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 251 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 304 Query: 74 A 74 A Sbjct: 305 A 305 >gi|271499168|ref|YP_003332193.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586] gi|270342723|gb|ACZ75488.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586] Length = 650 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|256960612|ref|ZP_05564783.1| peptidase M41 [Enterococcus faecalis Merz96] gi|256951108|gb|EEU67740.1| peptidase M41 [Enterococcus faecalis Merz96] Length = 718 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275 >gi|227489371|ref|ZP_03919687.1| ATP-dependent protease, ATPase subunit [Corynebacterium glucuronolyticum ATCC 51867] gi|227090744|gb|EEI26056.1| ATP-dependent protease, ATPase subunit [Corynebacterium glucuronolyticum ATCC 51867] Length = 870 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA +AV+ A+R R R A L+D P + + Sbjct: 514 FKLTEEESSRLIHMEDELHKRIIGQEDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 567 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 568 FAGPSGVGKTELSKALAEF 586 >gi|254446281|ref|ZP_05059757.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235] gi|198260589|gb|EDY84897.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235] Length = 834 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ EL +IGQ +A A++ ALR R R ADL+D P + + +GPTGVGKT + Sbjct: 514 QLEKELQEIVIGQDEACVAISKALR-RSR-----ADLKDPKRPIGSFMFMGPTGVGKTFL 567 Query: 70 SRRLA-RLAG--APFIKVEVTKFTEIGYVGRNV 99 +R LA ++ G I+V+++++ E V R + Sbjct: 568 ARTLAEKMFGDRDAIIQVDMSEYMEKFSVSRMI 600 >gi|193213377|ref|YP_001999330.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] gi|193086854|gb|ACF12130.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] Length = 654 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + F E+ +VG + +RDL + A Sbjct: 241 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 297 >gi|153940193|ref|YP_001392688.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum F str. Langeland] gi|152936089|gb|ABS41587.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str. Langeland] gi|295320670|gb|ADG01048.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum F str. 230613] Length = 658 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|148381284|ref|YP_001255825.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 3502] gi|153931204|ref|YP_001385661.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. ATCC 19397] gi|153936273|ref|YP_001389067.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A str. Hall] gi|148290768|emb|CAL84899.1| cell division protein [Clostridium botulinum A str. ATCC 3502] gi|152927248|gb|ABS32748.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str. ATCC 19397] gi|152932187|gb|ABS37686.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A str. Hall] Length = 658 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|159045479|ref|YP_001534273.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter shibae DFL 12] gi|157913239|gb|ABV94672.1| ATP-dependent Clp protease ATP-binding subunit [Dinoroseobacter shibae DFL 12] Length = 775 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 18/105 (17%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R + GQ +A A++ A++ A LR+ P N L GPTGVGKT ++++L+ Sbjct: 468 LKRVVFGQDNAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLS 521 Query: 75 RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 G ++ +++++ E GYVG + ++ D VD Sbjct: 522 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 566 >gi|108761289|ref|YP_632993.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus xanthus DK 1622] gi|108465169|gb|ABF90354.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Myxococcus xanthus DK 1622] Length = 884 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 10/93 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 E+ S L +IGQ +A R ++ A+R R R A L+DE P + L +GPTGVGKT + Sbjct: 570 ELESRLHERVIGQDEAIRVLSQAIR-RAR-----AGLKDESRPIGSFLFLGPTGVGKTEL 623 Query: 70 SRRLARLAGA---PFIKVEVTKFTEIGYVGRNV 99 ++ LA L I+ +++++ E V R V Sbjct: 624 AKTLAELLFGDEKALIRFDMSEYMEKHTVSRLV 656 >gi|99081932|ref|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040] gi|99038212|gb|ABF64824.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040] Length = 792 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 479 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 532 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 533 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 589 >gi|41614981|ref|NP_963479.1| proteasome-activating nucleotidase [Nanoarchaeum equitans Kin4-M] gi|40068705|gb|AAR39040.1| NEQ186 [Nanoarchaeum equitans Kin4-M] Length = 369 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 17/103 (16%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 PK +LL GP G GKT I + LA+ A A FI + ++ + Y+G +++++L D A Sbjct: 143 PKGVLLYGPPGTGKTLIGKALAKSANATFIYIVGSELVQ-KYIGEGA-KLVKELFDYA-- 198 Query: 113 IVRESRRDEVREQASINAEERILDALVGK---TATSNTREVFR 152 RE A +DA+ + T TS REV R Sbjct: 199 ----------REHAPAIVFIDEIDAIAARRIETGTSGEREVQR 231 >gi|322807659|emb|CBZ05234.1| cell division protein FtsH [Clostridium botulinum H04402 065] Length = 658 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|317501238|ref|ZP_07959443.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|316897414|gb|EFV19480.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] Length = 685 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311 >gi|296166661|ref|ZP_06849087.1| ATP-dependent protease, ATPase subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897996|gb|EFG77576.1| ATP-dependent protease, ATPase subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 844 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|254823225|ref|ZP_05228226.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium intracellulare ATCC 13950] Length = 847 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|256956807|ref|ZP_05560978.1| peptidase M41 [Enterococcus faecalis DS5] gi|256964188|ref|ZP_05568359.1| peptidase M41 [Enterococcus faecalis HIP11704] gi|257421554|ref|ZP_05598544.1| cell division protein ftsH [Enterococcus faecalis X98] gi|294779309|ref|ZP_06744712.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1] gi|300862072|ref|ZP_07108152.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD Ef11] gi|256947303|gb|EEU63935.1| peptidase M41 [Enterococcus faecalis DS5] gi|256954684|gb|EEU71316.1| peptidase M41 [Enterococcus faecalis HIP11704] gi|257163378|gb|EEU93338.1| cell division protein ftsH [Enterococcus faecalis X98] gi|294453595|gb|EFG21994.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis PC1.1] gi|295112550|emb|CBL31187.1| membrane protease FtsH catalytic subunit [Enterococcus sp. 7L76] gi|300848597|gb|EFK76354.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TUSoD Ef11] gi|323479478|gb|ADX78917.1| ATP-dependent metallopeptidase, cell division protease ftsH domain protein [Enterococcus faecalis 62] Length = 718 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275 >gi|223041503|ref|ZP_03611706.1| cell division protease FtsH-like protein [Actinobacillus minor 202] gi|223017761|gb|EEF16168.1| cell division protease FtsH-like protein [Actinobacillus minor 202] Length = 642 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 190 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 246 >gi|168178995|ref|ZP_02613659.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226950776|ref|YP_002805867.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] gi|182670026|gb|EDT82002.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum NCTC 2916] gi|226844301|gb|ACO86967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A2 str. Kyoto] Length = 658 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|156838711|ref|XP_001643056.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM 70294] gi|156113646|gb|EDO15198.1| hypothetical protein Kpol_401p3 [Vanderwaltozyma polyspora DSM 70294] Length = 786 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R L A + P+ +L GP G GKT +++ A AG PF+ V ++F E+ Sbjct: 323 LKNPQRYTDLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 376 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 377 FVGVGASR-VRDLFEQA 392 >gi|153814599|ref|ZP_01967267.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756] gi|145848093|gb|EDK25011.1| hypothetical protein RUMTOR_00813 [Ruminococcus torques ATCC 27756] Length = 685 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G+ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 223 RDVAGEDEAKESLQEVVDFLHNPGKYSGIGAKL-----PKGALLVGPPGTGKTLLAKAVA 277 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 278 GEAKVPFFSLSGSAFVEM-YVGVGASR-VRDLFKQA 311 >gi|118443590|ref|YP_877423.1| cell division protein ftsH [Clostridium novyi NT] gi|118134046|gb|ABK61090.1| cell division protein ftsH [Clostridium novyi NT] Length = 611 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGASR-VRDLFEQA 251 >gi|192455670|ref|NP_001122223.1| fidgetin-like protein 1 [Danio rerio] gi|190339286|gb|AAI62519.1| Wu:fb82h05 [Danio rerio] gi|220678852|emb|CAX12972.1| novel protein (zgc:193664) [Danio rerio] Length = 661 Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L +A Sbjct: 421 PKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTS-KWVGEG-EKMVRALFAIA 476 >gi|331083543|ref|ZP_08332654.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403754|gb|EGG83306.1| hypothetical protein HMPREF0992_01578 [Lachnospiraceae bacterium 6_1_63FAA] Length = 636 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 180 VAGQDEAKESLQEVVDFLHNPGKYTAIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 234 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 235 AHVPFFSLSGSDFVEM-FVGVGASR-VRDLFEEA 266 >gi|325578451|ref|ZP_08148586.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae ATCC 33392] gi|325160187|gb|EGC72316.1| ATP-dependent metallopeptidase HflB [Haemophilus parainfluenzae ATCC 33392] Length = 635 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|323350187|gb|EGA84334.1| Yme1p [Saccharomyces cerevisiae VL3] Length = 692 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 258 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 310 >gi|330723806|gb|AEC46176.1| cell division protein [Mycoplasma hyorhinis MCLD] Length = 726 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG---RNVEQIIRD 105 +PK ILL GP G GKT I++ A A PF + + F E+ YVG + V ++ +D Sbjct: 269 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEL-YVGVGAKRVRELFKD 324 >gi|289548616|ref|YP_003473604.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484] gi|289182233|gb|ADC89477.1| ATP-dependent metalloprotease FtsH [Thermocrinis albus DSM 14484] Length = 620 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL G GVGKT ++R +A A PFI V + F E+ +VG + +RDL + A Sbjct: 188 PKGVLLYGEPGVGKTLLARAIAGEAHVPFISVSGSDFVEM-FVGVGAAR-VRDLFETA 243 >gi|237796782|ref|YP_002864334.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] gi|229261886|gb|ACQ52919.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum Ba4 str. 657] Length = 658 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|170757175|ref|YP_001782967.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum B1 str. Okra] gi|169122387|gb|ACA46223.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B1 str. Okra] Length = 658 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|167767829|ref|ZP_02439882.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1] gi|167710568|gb|EDS21147.1| hypothetical protein CLOSS21_02366 [Clostridium sp. SS2/1] Length = 598 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 179 IPKGVLLVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEM-FVGVGAAR-VRDL 231 >gi|170089903|ref|XP_001876174.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649434|gb|EDR13676.1| predicted protein [Laccaria bicolor S238N-H82] Length = 361 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT +++ LA+ +GA FI + + T Y Sbjct: 119 PKGVLLFGPPGCGKTMLAKALAKESGATFINIAASVLTNKWY 160 >gi|29374906|ref|NP_814059.1| cell division protein FtsH [Enterococcus faecalis V583] gi|256618325|ref|ZP_05475171.1| peptidase M41 [Enterococcus faecalis ATCC 4200] gi|256855219|ref|ZP_05560580.1| cell division protein FtsH [Enterococcus faecalis T8] gi|257081552|ref|ZP_05575913.1| peptidase M41 [Enterococcus faecalis E1Sol] gi|257084200|ref|ZP_05578561.1| cell division protein FtsH [Enterococcus faecalis Fly1] gi|257088027|ref|ZP_05582388.1| peptidase M41 [Enterococcus faecalis D6] gi|257417630|ref|ZP_05594624.1| peptidase M41 [Enterococcus faecalis AR01/DG] gi|257418645|ref|ZP_05595639.1| peptidase M41 [Enterococcus faecalis T11] gi|29342364|gb|AAO80130.1| cell division protein FtsH [Enterococcus faecalis V583] gi|256597852|gb|EEU17028.1| peptidase M41 [Enterococcus faecalis ATCC 4200] gi|256709732|gb|EEU24779.1| cell division protein FtsH [Enterococcus faecalis T8] gi|256989582|gb|EEU76884.1| peptidase M41 [Enterococcus faecalis E1Sol] gi|256992230|gb|EEU79532.1| cell division protein FtsH [Enterococcus faecalis Fly1] gi|256996057|gb|EEU83359.1| peptidase M41 [Enterococcus faecalis D6] gi|257159458|gb|EEU89418.1| peptidase M41 [Enterococcus faecalis ARO1/DG] gi|257160473|gb|EEU90433.1| peptidase M41 [Enterococcus faecalis T11] Length = 718 Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275 >gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510] gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510] Length = 593 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ A AG PF + F E+ +VG + +R+L A Sbjct: 186 VPKGLLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEM-FVGLGAAR-VRNLFKTA 242 >gi|260550321|ref|ZP_05824533.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624] gi|260406633|gb|EEX00114.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624] Length = 758 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A A+A A++ A L+ P + + GPTGVGKT ++++L Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGR 97 A+L G ++ +++++ E V R Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSR 530 >gi|259416112|ref|ZP_05740032.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter sp. TrichCH4B] gi|259347551|gb|EEW59328.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Silicibacter sp. TrichCH4B] Length = 778 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 465 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 518 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 519 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 569 >gi|198443066|pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh gi|198443067|pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh gi|198443069|pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex gi|198443070|pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex gi|198443071|pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex gi|198443072|pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex gi|198443073|pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Adp Complex Length = 268 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETA 99 >gi|190348983|gb|EDK41546.2| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC 6260] Length = 978 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK V L+N + ++L A + P+ +L GP G GKT I++ A Sbjct: 509 VAGMSEAKEEVVEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATAGE 563 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL A Sbjct: 564 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 595 >gi|163796934|ref|ZP_02190890.1| Peptidase M41, FtsH [alpha proteobacterium BAL199] gi|159177681|gb|EDP62232.1| Peptidase M41, FtsH [alpha proteobacterium BAL199] Length = 643 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|158422152|ref|YP_001523444.1| FtsH peptidase [Azorhizobium caulinodans ORS 571] gi|158329041|dbj|BAF86526.1| FtsH peptidase [Azorhizobium caulinodans ORS 571] Length = 640 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|187924838|ref|YP_001896480.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN] gi|187716032|gb|ACD17256.1| ATP-dependent metalloprotease FtsH [Burkholderia phytofirmans PsJN] Length = 629 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|46446274|ref|YP_007639.1| cell division protein FtsH [Candidatus Protochlamydia amoebophila UWE25] gi|81627381|sp|Q6MDI5|FTSH_PARUW RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|46399915|emb|CAF23364.1| probable cell division protein FtsH [Candidatus Protochlamydia amoebophila UWE25] Length = 916 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L +GP G GKT I++ +A A PF + + F E+ +VG + IRDL + A Sbjct: 456 IPKGVLCIGPPGTGKTLIAKAVAGEADRPFFSISGSDFVEM-FVGVGASR-IRDLFEQA 512 >gi|324323802|gb|ADY24846.1| hypothetical protein YBT020_28449 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 303 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 L++ IIGQQD K+ + +L R++ P +L GP+GVGKT +S+ +++ Sbjct: 60 LNKEIIGQQDPKKKIMSSLYKLRRKKNNK--------PVVLLFYGPSGVGKTELSKVVSK 111 Query: 76 LAGAPFIKVEVT 87 G ++++ + Sbjct: 112 HLGGSLLRIQFS 123 >gi|323302542|gb|EGA56349.1| Yme1p [Saccharomyces cerevisiae FostersB] Length = 692 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 258 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 310 >gi|299144437|ref|ZP_07037517.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518922|gb|EFI42661.1| ATP-dependent metalloprotease FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 623 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +SR +A A PF + + F E+ +VG + +RDL + A Sbjct: 192 IPKGVLMVGPPGTGKTYLSRAVAGEAKVPFFIMSGSDFVEM-FVGVGASR-VRDLFENA 248 >gi|269468371|gb|EEZ80036.1| ATPase with chaperone activity, ATP-binding subunit [uncultured SUP05 cluster bacterium] Length = 613 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 18/99 (18%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 + + SEL + GQ DA +++ +++ +R Q+ D+ M + L GPTGVGKT Sbjct: 444 KNLESELKLGVFGQNDAVESLSTSIKLSRSGLAQV-----DKPM-GSFLFAGPTGVGKTE 497 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVG 96 I ++LAR+ G ++ +++++ E GYVG Sbjct: 498 ICKQLARIMGVKLLRFDMSEYMERHSISKLIGSPPGYVG 536 >gi|159463438|ref|XP_001689949.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] gi|158283937|gb|EDP09687.1| membrane AAA-metalloprotease [Chlamydomonas reinhardtii] Length = 752 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK LLVGP G GKT +++ A AG PF+ + + F E+ +VG + +RDL Sbjct: 318 IPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEM-FVGVGPAR-VRDL 370 >gi|91200776|emb|CAJ73829.1| strongly similar to negative regulator of genetic competence ClpC/MecB [Candidatus Kuenenia stuttgartiensis] Length = 826 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +I Q++A RA++ A+R R R A L++ P + + VGP+GVGKT ++R L Sbjct: 510 ELHKMVISQEEATRAISKAIR-RSR-----ARLKNPNRPVASFIFVGPSGVGKTHLARSL 563 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A+L ++++++++ E + R Sbjct: 564 AKLVFGEEGSLVQIDMSEYMEKHSISR 590 >gi|55379429|ref|YP_137280.1| cell division protein FtsH [Haloarcula marismortui ATCC 43049] gi|55232154|gb|AAV47573.1| cell division protein FtsH [Haloarcula marismortui ATCC 43049] Length = 492 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103 +L VGP G GKT+++R LA PF++V+++ T +G +NVE++ Sbjct: 255 LLFVGPPGTGKTSVARALAHDLDLPFVEVKLSMITSQYLGETAKNVEKVF 304 >gi|194334584|ref|YP_002016444.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] gi|194312402|gb|ACF46797.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] Length = 660 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + F E+ +VG + +RDL + A Sbjct: 243 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGAAR-VRDLFETA 299 >gi|31794773|ref|NP_857266.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium bovis AF2122/97] gi|57117131|ref|YP_177995.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium tuberculosis H37Rv] gi|121639516|ref|YP_979740.1| putative ATP-dependent Clp protease ATP-binding subunit clpC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663461|ref|YP_001284984.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium tuberculosis H37Ra] gi|148824802|ref|YP_001289556.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis F11] gi|167968197|ref|ZP_02550474.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis H37Ra] gi|215405646|ref|ZP_03417827.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis 02_1987] gi|224992013|ref|YP_002646702.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium bovis BCG str. Tokyo 172] gi|253800637|ref|YP_003033638.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis KZN 1435] gi|260184516|ref|ZP_05761990.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis CPHL_A] gi|289445190|ref|ZP_06434934.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis CPHL_A] gi|289555859|ref|ZP_06445069.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis KZN 605] gi|289747433|ref|ZP_06506811.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium tuberculosis 02_1987] gi|294993716|ref|ZP_06799407.1| probable ATP-dependent Clp protease ATP-binding subunit [Mycobacterium tuberculosis 210] gi|297636272|ref|ZP_06954052.1| probable ATP-dependent Clp protease ATP-binding subunit [Mycobacterium tuberculosis KZN 4207] gi|297733266|ref|ZP_06962384.1| probable ATP-dependent Clp protease ATP-binding subunit [Mycobacterium tuberculosis KZN R506] gi|306791193|ref|ZP_07429495.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu005] gi|307086394|ref|ZP_07495507.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu012] gi|313660596|ref|ZP_07817476.1| probable ATP-dependent Clp protease ATP-binding subunit [Mycobacterium tuberculosis KZN V2475] gi|61221148|sp|P0A522|CLPC_MYCTU RecName: Full=Probable ATP-dependent Clp protease ATP-binding subunit gi|61221149|sp|P0A523|CLPC_MYCBO RecName: Full=Probable ATP-dependent Clp protease ATP-binding subunit gi|31620370|emb|CAD95813.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC [Mycobacterium bovis AF2122/97] gi|41352812|emb|CAE55620.1| PROBABLE ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1 [Mycobacterium tuberculosis H37Rv] gi|121495164|emb|CAL73650.1| Probable ATP-dependent clp proteasE ATP-binding subunit clpC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507613|gb|ABQ75422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium tuberculosis H37Ra] gi|148723329|gb|ABR07954.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis F11] gi|224775128|dbj|BAH27934.1| putative ATP-dependent Clp protease ATP-binding subunit [Mycobacterium bovis BCG str. Tokyo 172] gi|253322140|gb|ACT26743.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis KZN 1435] gi|289418148|gb|EFD15349.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis CPHL_A] gi|289440491|gb|EFD22984.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis KZN 605] gi|289687961|gb|EFD55449.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium tuberculosis 02_1987] gi|308340222|gb|EFP29073.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu005] gi|308364160|gb|EFP53011.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis SUMu012] gi|323717705|gb|EGB26905.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium tuberculosis CDC1551A] gi|326905435|gb|EGE52368.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium tuberculosis W-148] gi|328460368|gb|AEB05791.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis KZN 4207] Length = 848 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|261880081|ref|ZP_06006508.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361] gi|270333236|gb|EFA44022.1| ATP-dependent metalloprotease FtsH [Prevotella bergensis DSM 17361] Length = 720 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ V L+N + +L + PK LL+GP G GKT +++ +A Sbjct: 201 VAGQEGAKQEVQEIVEFLKNPEKYTELGGKI-----PKGALLIGPPGTGKTLLAKAVAGE 255 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF + + F E+ +VG Sbjct: 256 AGVPFFSMSGSDFVEM-FVG 274 >gi|257088704|ref|ZP_05583065.1| peptidase M41 [Enterococcus faecalis CH188] gi|256997516|gb|EEU84036.1| peptidase M41 [Enterococcus faecalis CH188] Length = 718 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 219 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 275 >gi|221203042|ref|ZP_03576061.1| putative Cell division protease FtsH homolog [Burkholderia multivorans CGD2] gi|221176976|gb|EEE09404.1| putative Cell division protease FtsH homolog [Burkholderia multivorans CGD2] Length = 676 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 209 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 262 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 263 FVGVGAAR-VRDLFEQA 278 >gi|209964987|ref|YP_002297902.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum centenum SW] gi|209958453|gb|ACI99089.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum centenum SW] Length = 765 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 12/76 (15%) Query: 45 ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92 A LRD P N L GPTGVGKT ++++LAR G + +++++ E Sbjct: 483 AGLRDAEKPIGNYLFSGPTGVGKTEVAKQLARTLGIELTRFDMSEYMERHTVSRLIGAPP 542 Query: 93 GYVGRNVEQIIRDLVD 108 GYVG + ++ D VD Sbjct: 543 GYVGFDQGGLLTDAVD 558 >gi|126641955|ref|YP_001084939.1| ATP-binding protease component [Acinetobacter baumannii ATCC 17978] Length = 718 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A A+A A++ A L+ P + + GPTGVGKT ++++L Sbjct: 413 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 466 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 A+L G ++ +++++ E GYVG + ++ D + Sbjct: 467 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 511 >gi|41406559|ref|NP_959395.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394908|gb|AAS02778.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 843 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|83950866|ref|ZP_00959599.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius nubinhibens ISM] gi|83838765|gb|EAP78061.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Roseovarius nubinhibens ISM] Length = 872 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R +IGQ A +AVA A+R R R A L DE P + L +GPTGVGKT +++ +A Sbjct: 565 LHRRVIGQNQAVKAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 618 Query: 75 RLA---GAPFIKVEVTKFTEIGYVGR 97 + +++++++F E V R Sbjct: 619 EFLFDDDSAMVRIDMSEFMEKHSVAR 644 >gi|116689319|ref|YP_834942.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia HI2424] gi|170732618|ref|YP_001764565.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3] gi|116647408|gb|ABK08049.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia HI2424] gi|169815860|gb|ACA90443.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3] Length = 631 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|326525491|dbj|BAJ88792.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326527513|dbj|BAK08031.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 410 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P + S++ I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT Sbjct: 152 PNVLYSDIGGCDIQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTM 206 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 LAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 246 >gi|312904626|ref|ZP_07763781.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635] gi|310631978|gb|EFQ15261.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0635] gi|315036602|gb|EFT48534.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0027] gi|315153551|gb|EFT97567.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0031] gi|315158586|gb|EFU02603.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0312] gi|329577260|gb|EGG58724.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1467] Length = 726 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283 >gi|301156345|emb|CBW15816.1| protease, ATP-dependent zinc-metallo [Haemophilus parainfluenzae T3T1] Length = 618 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 169 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 225 >gi|307730491|ref|YP_003907715.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003] gi|323526824|ref|YP_004228977.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001] gi|307585026|gb|ADN58424.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1003] gi|323383826|gb|ADX55917.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1001] Length = 629 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|257453455|ref|ZP_05618750.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter aerosaccus SK60] gi|257449207|gb|EEV24155.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Enhydrobacter aerosaccus SK60] Length = 819 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 18/95 (18%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 S L + GQ +A + +A A++ R A L+ + P + + GPTGVGKT +SR+ Sbjct: 518 SNLKHLVFGQDEAIKNLADAIK--LSR----AGLKPDDKPIGSFMFAGPTGVGKTEVSRQ 571 Query: 73 LARLAGAPFIKVEVTKFTEI-----------GYVG 96 LA L G ++ +++++ E GYVG Sbjct: 572 LANLLGIELVRFDMSEYMEAHTASRLIGAPPGYVG 606 >gi|254552708|ref|ZP_05143155.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 303 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R + A L+D P + + GP+GVGKT +S+ L Sbjct: 142 ELHKRIIGQEDAVKAVSKAIR------RTRAGLKDPKRPSGSFIFAGPSGVGKTELSKAL 195 Query: 74 A 74 A Sbjct: 196 A 196 >gi|254448846|ref|ZP_05062302.1| cell division protein FtsH [gamma proteobacterium HTCC5015] gi|198261536|gb|EDY85825.1| cell division protein FtsH [gamma proteobacterium HTCC5015] Length = 646 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|170695459|ref|ZP_02886604.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M] gi|170139650|gb|EDT07833.1| ATP-dependent metalloprotease FtsH [Burkholderia graminis C4D1M] Length = 629 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|169795755|ref|YP_001713548.1| ATP-binding protease component [Acinetobacter baumannii AYE] gi|184158340|ref|YP_001846679.1| ATPase [Acinetobacter baumannii ACICU] gi|213157553|ref|YP_002319598.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB0057] gi|239503975|ref|ZP_04663285.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB900] gi|260554818|ref|ZP_05827039.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii ATCC 19606] gi|301344684|ref|ZP_07225425.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB056] gi|301511219|ref|ZP_07236456.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB058] gi|301595569|ref|ZP_07240577.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB059] gi|332871193|ref|ZP_08439770.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6013113] gi|332873456|ref|ZP_08441408.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6014059] gi|169148682|emb|CAM86548.1| ATP-binding protease component [Acinetobacter baumannii AYE] gi|183209934|gb|ACC57332.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter baumannii ACICU] gi|193077510|gb|ABO12337.2| ATP-binding protease component [Acinetobacter baumannii ATCC 17978] gi|213056713|gb|ACJ41615.1| ATP-dependent Clp protease ATP-binding subunit [Acinetobacter baumannii AB0057] gi|260411360|gb|EEX04657.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii ATCC 19606] gi|322508667|gb|ADX04121.1| clpA [Acinetobacter baumannii 1656-2] gi|323518275|gb|ADX92656.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter baumannii TCDC-AB0715] gi|332731678|gb|EGJ62961.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6013113] gi|332738344|gb|EGJ69219.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6014059] Length = 758 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A A+A A++ A L+ P + + GPTGVGKT ++++L Sbjct: 453 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 506 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 A+L G ++ +++++ E GYVG + ++ D + Sbjct: 507 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 551 >gi|168182032|ref|ZP_02616696.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf] gi|182674745|gb|EDT86706.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum Bf] Length = 658 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787792|emb|CAE16907.1| cell division protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 653 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPGRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|115351227|ref|YP_773066.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD] gi|172060241|ref|YP_001807893.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] gi|115281215|gb|ABI86732.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria AMMD] gi|171992758|gb|ACB63677.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] Length = 631 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] Length = 658 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + L+ R Q++ A + PK +LLVGP G GKT +++ +A Sbjct: 209 VAGQEEAKLELEEIVDFLKEPARFQKIGARI-----PKGVLLVGPPGTGKTLLAKAVAGE 263 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 AG F + F E+ +VG + +RDL + Sbjct: 264 AGVSFFHTSGSDFVEM-FVGMGAAR-VRDLFE 293 >gi|323344884|ref|ZP_08085108.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269] gi|323094154|gb|EFZ36731.1| ATP-dependent metalloprotease FtsH [Prevotella oralis ATCC 33269] Length = 678 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 229 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 285 >gi|307290189|ref|ZP_07570107.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411] gi|306498745|gb|EFM68244.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0411] Length = 728 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 229 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 285 >gi|304413877|ref|ZP_07395294.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola LSR1] gi|304283597|gb|EFL91992.1| ATP-dependent zinc metalloprotease [Candidatus Regiella insecticola LSR1] Length = 638 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LRDPGRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|294669676|ref|ZP_06734743.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308589|gb|EFE49832.1| hypothetical protein NEIELOOT_01577 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 671 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP+ ILL G G GKT +++ +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 192 MPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248 >gi|259501964|ref|ZP_05744866.1| cell division protein FtsH [Lactobacillus antri DSM 16041] gi|259170141|gb|EEW54636.1| cell division protein FtsH [Lactobacillus antri DSM 16041] Length = 706 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 225 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 281 >gi|206559644|ref|YP_002230405.1| FtsH endopeptidase [Burkholderia cenocepacia J2315] gi|198035682|emb|CAR51569.1| FtsH endopeptidase [Burkholderia cenocepacia J2315] Length = 632 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|156849115|ref|XP_001647438.1| hypothetical protein Kpol_1018p113 [Vanderwaltozyma polyspora DSM 70294] gi|156118124|gb|EDO19580.1| hypothetical protein Kpol_1018p113 [Vanderwaltozyma polyspora DSM 70294] Length = 396 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 331 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 383 >gi|78065910|ref|YP_368679.1| FtsH peptidase [Burkholderia sp. 383] gi|77966655|gb|ABB08035.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383] Length = 632 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|51244738|ref|YP_064622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfotalea psychrophila LSv54] gi|50875775|emb|CAG35615.1| probable ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfotalea psychrophila LSv54] Length = 750 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTA 68 R + + L + GQ +A +A+ A++ R R A L + L P + + GPTGVGKT Sbjct: 455 RHLDNSLRSVVYGQDNAIKALTTAVK-RSR-----AGLGNPLSPTGSFVFSGPTGVGKTE 508 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA+ G F + +++++ E V R Sbjct: 509 VARQLAKQLGIHFERFDMSEYMEKHAVAR 537 >gi|148543505|ref|YP_001270875.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri DSM 20016] gi|194467680|ref|ZP_03073667.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23] gi|227363654|ref|ZP_03847768.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3] gi|325681849|ref|ZP_08161368.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A] gi|148530539|gb|ABQ82538.1| membrane protease FtsH catalytic subunit [Lactobacillus reuteri DSM 20016] gi|194454716|gb|EDX43613.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri 100-23] gi|227071323|gb|EEI09632.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri MM2-3] gi|324978940|gb|EGC15888.1| cell division protein FtsH [Lactobacillus reuteri MM4-1A] Length = 702 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283 >gi|295677138|ref|YP_003605662.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002] gi|295436981|gb|ADG16151.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. CCGE1002] Length = 629 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|227544679|ref|ZP_03974728.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A] gi|300909079|ref|ZP_07126542.1| cell division protein FtsH [Lactobacillus reuteri SD2112] gi|227185325|gb|EEI65396.1| ATP-dependent metalloprotease FtsH [Lactobacillus reuteri CF48-3A] gi|300894486|gb|EFK87844.1| cell division protein FtsH [Lactobacillus reuteri SD2112] Length = 702 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283 >gi|221196369|ref|ZP_03569416.1| cell division protease FtsH homolog [Burkholderia multivorans CGD2M] gi|221182923|gb|EEE15323.1| cell division protease FtsH homolog [Burkholderia multivorans CGD2M] Length = 655 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|215429096|ref|ZP_03427015.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis T92] gi|289752310|ref|ZP_06511688.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis T92] gi|289692897|gb|EFD60326.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis T92] Length = 682 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 347 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 400 Query: 74 A 74 A Sbjct: 401 A 401 >gi|184152912|ref|YP_001841253.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112] gi|183224256|dbj|BAG24773.1| cell division protein FtsH [Lactobacillus reuteri JCM 1112] Length = 680 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 205 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 261 >gi|171318231|ref|ZP_02907394.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5] gi|171096575|gb|EDT41469.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MEX-5] Length = 631 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|170761395|ref|YP_001788658.1| ATP-dependent metalloprotease FtsH [Clostridium botulinum A3 str. Loch Maree] gi|169408384|gb|ACA56795.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum A3 str. Loch Maree] Length = 658 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|91784537|ref|YP_559743.1| FtsH peptidase [Burkholderia xenovorans LB400] gi|296158195|ref|ZP_06841027.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] gi|91688491|gb|ABE31691.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans LB400] gi|295891531|gb|EFG71317.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. Ch1-1] Length = 629 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|85859372|ref|YP_461574.1| cell division protein [Syntrophus aciditrophicus SB] gi|85722463|gb|ABC77406.1| cell division protein [Syntrophus aciditrophicus SB] Length = 611 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF+ + + F E+ +VG + +RDL A Sbjct: 185 IPKGLLLVGPPGTGKTLLAKAIAGEADVPFLTISGSDFVEM-FVGVGASR-VRDLFTQA 241 >gi|21221802|ref|NP_627581.1| Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)] gi|256787021|ref|ZP_05525452.1| Clp-family ATP-binding protease [Streptomyces lividans TK24] gi|289770914|ref|ZP_06530292.1| Clp-family ATP-binding protease [Streptomyces lividans TK24] gi|4585605|emb|CAB40873.1| putative Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)] gi|289701113|gb|EFD68542.1| Clp-family ATP-binding protease [Streptomyces lividans TK24] Length = 841 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589 >gi|107022372|ref|YP_620699.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU 1054] gi|254245759|ref|ZP_04939080.1| Peptidase M41 [Burkholderia cenocepacia PC184] gi|105892561|gb|ABF75726.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia AU 1054] gi|124870535|gb|EAY62251.1| Peptidase M41 [Burkholderia cenocepacia PC184] Length = 627 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 238 >gi|125973732|ref|YP_001037642.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium thermocellum ATCC 27405] gi|256005534|ref|ZP_05430495.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium thermocellum DSM 2360] gi|281417889|ref|ZP_06248909.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium thermocellum JW20] gi|125713957|gb|ABN52449.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Clostridium thermocellum ATCC 27405] gi|255990514|gb|EEU00635.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium thermocellum DSM 2360] gi|281409291|gb|EFB39549.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium thermocellum JW20] gi|316940074|gb|ADU74108.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Clostridium thermocellum DSM 1313] Length = 776 Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 31/43 (72%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++L VGPTGVGKT ++++L+ G PFI+ +++++ E V R Sbjct: 517 SLLFVGPTGVGKTELAKQLSLHLGIPFIRFDMSEYQEKHTVSR 559 >gi|328956579|ref|YP_004373965.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4] gi|328672903|gb|AEB28949.1| ATP-dependent zinc metalloprotease FtsH [Carnobacterium sp. 17-4] Length = 721 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 278 >gi|330816268|ref|YP_004359973.1| FtsH endopeptidase [Burkholderia gladioli BSR3] gi|327368661|gb|AEA60017.1| FtsH endopeptidase [Burkholderia gladioli BSR3] Length = 629 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|326383982|ref|ZP_08205665.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197142|gb|EGD54333.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 846 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQQDA AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQQDAVAAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|325568178|ref|ZP_08144619.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755] gi|325158379|gb|EGC70530.1| cell division protein FtsH [Enterococcus casseliflavus ATCC 12755] Length = 702 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|303391441|ref|XP_003073950.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon intestinalis ATCC 50506] gi|303303099|gb|ADM12590.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon intestinalis ATCC 50506] Length = 425 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 IIG +D K+ + + +R L LR PK +LL GP G GKT I + +A A Sbjct: 156 IIGLKDVKKTINEIVLWPMQRPDLFTGLRGP--PKGLLLFGPPGTGKTMIGKCIASQCKA 213 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T +VG E+++R L +A Sbjct: 214 TFFSISASSLTS-KWVGEG-EKMVRALFYLA 242 >gi|293388119|ref|ZP_06632646.1| cell division protein FtsH [Enterococcus faecalis S613] gi|312909257|ref|ZP_07768114.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 516] gi|291082495|gb|EFE19458.1| cell division protein FtsH [Enterococcus faecalis S613] gi|311290499|gb|EFQ69055.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 516] Length = 725 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282 >gi|260913936|ref|ZP_05920410.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC 43325] gi|260632023|gb|EEX50200.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC 43325] Length = 639 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238 >gi|260565806|ref|ZP_05836289.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M] gi|260151179|gb|EEW86274.1| cell division protein FtsH [Brucella melitensis bv. 1 str. 16M] Length = 516 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 61 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 117 >gi|257899973|ref|ZP_05679626.1| peptidase M41 [Enterococcus faecium Com15] gi|293571078|ref|ZP_06682119.1| Cell division protease FtsH [Enterococcus faecium E980] gi|257837885|gb|EEV62959.1| peptidase M41 [Enterococcus faecium Com15] gi|291608861|gb|EFF38142.1| Cell division protease FtsH [Enterococcus faecium E980] Length = 703 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|251791041|ref|YP_003005762.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591] gi|247539662|gb|ACT08283.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591] Length = 650 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|222152938|ref|YP_002562115.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus uberis 0140J] gi|222113751|emb|CAR41760.1| putative ATP-dependent protease ATP-binding subunit ClpL [Streptococcus uberis 0140J] Length = 700 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 9/67 (13%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALR-NRWRRQQLPADLRDELMP-KNILLVGPTGVGKT 67 +E+ S L +++IGQ A AVA A+R NR A D P + L VGPTGVGKT Sbjct: 408 KEMDSRLKQHVIGQNQAVEAVARAIRRNR-------AGFDDGHRPIGSFLFVGPTGVGKT 460 Query: 68 AISRRLA 74 ++++LA Sbjct: 461 ELAKQLA 467 >gi|215408555|emb|CAR31127.1| HflB protein [Candidatus Phytoplasma mali] Length = 166 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|209517185|ref|ZP_03266030.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160] gi|209502321|gb|EEA02332.1| ATP-dependent metalloprotease FtsH [Burkholderia sp. H160] Length = 629 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|170697952|ref|ZP_02889035.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria IOP40-10] gi|170137118|gb|EDT05363.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria IOP40-10] Length = 631 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|149410206|ref|XP_001506217.1| PREDICTED: similar to Fidgetin-like 1 [Ornithorhynchus anatinus] Length = 731 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 491 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 546 >gi|44417|emb|CAA37573.1| unnamed protein product [Mycobacterium leprae] Length = 649 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|263099|gb|AAB24841.1| Tat binding protein 7, TBP-7=transcriptional activator [human, Peptide, 458 aa] Length = 458 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|320335488|ref|YP_004172199.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] gi|319756777|gb|ADV68534.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM 21211] Length = 623 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R QL A + P +LLVGP G GKT +++ +A AG P+ + + F E+ Sbjct: 188 LRHPERYHQLGARI-----PHGLLLVGPPGSGKTLLAKAVAGEAGVPYFSISGSDFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|307129378|ref|YP_003881394.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Dickeya dadantii 3937] gi|306526907|gb|ADM96837.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Dickeya dadantii 3937] Length = 647 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|307274229|ref|ZP_07555437.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855] gi|306509191|gb|EFM78253.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0855] Length = 725 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282 >gi|296273085|ref|YP_003655716.1| AAA ATPase central domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097259|gb|ADG93209.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM 7299] Length = 493 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK +LL GP GVGKT I+R +A + PF F +I YVG +++ Sbjct: 148 LPKGVLLYGPPGVGKTLIARAVAGESNVPFFYQSGASFVQI-YVGMGAKRV 197 >gi|271968435|ref|YP_003342631.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021] gi|270511610|gb|ACZ89888.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021] Length = 663 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 246 LPKGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGASRVRELFEEARKV 305 Query: 110 AINIV 114 A +I+ Sbjct: 306 APSII 310 >gi|260202787|ref|ZP_05770278.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis K85] Length = 557 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 222 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 275 Query: 74 A 74 A Sbjct: 276 A 276 >gi|256762060|ref|ZP_05502640.1| peptidase M41 [Enterococcus faecalis T3] gi|257078476|ref|ZP_05572837.1| peptidase M41 [Enterococcus faecalis JH1] gi|256683311|gb|EEU23006.1| peptidase M41 [Enterococcus faecalis T3] gi|256986506|gb|EEU73808.1| peptidase M41 [Enterococcus faecalis JH1] Length = 709 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 210 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 266 >gi|255974765|ref|ZP_05425351.1| peptidase M41 [Enterococcus faecalis T2] gi|255967637|gb|EET98259.1| peptidase M41 [Enterococcus faecalis T2] Length = 711 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 268 >gi|255971765|ref|ZP_05422351.1| peptidase M41 [Enterococcus faecalis T1] gi|255962783|gb|EET95259.1| peptidase M41 [Enterococcus faecalis T1] Length = 711 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 212 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 268 >gi|240949043|ref|ZP_04753395.1| cell division protease FtsH-like protein [Actinobacillus minor NM305] gi|240296556|gb|EER47179.1| cell division protease FtsH-like protein [Actinobacillus minor NM305] Length = 643 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 191 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTMAGSDFVEM-FVGVGASR-VRDLFEQA 247 >gi|213646997|ref|ZP_03377050.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 277 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|187776739|ref|ZP_02993212.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC 15579] gi|187775398|gb|EDU39200.1| hypothetical protein CLOSPO_00254 [Clostridium sporogenes ATCC 15579] Length = 654 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L R ++ A L PK LLVGP G GKT +++ +A Sbjct: 167 VAGQDEAKESLVEIVDFLHKPERYTEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 221 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 222 AKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 253 >gi|167587472|ref|ZP_02379860.1| ATP-dependent metalloprotease FtsH [Burkholderia ubonensis Bu] Length = 631 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|162448221|ref|YP_001621353.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii PG-8A] gi|310943111|sp|A9NE17|FTSH_ACHLI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|161986328|gb|ABX81977.1| mebrane-bound ATP-dependent metalloprotease [Acholeplasma laidlawii PG-8A] Length = 641 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A A PF + + F E+ YVG + +RDL VA Sbjct: 214 VPKGVLLVGQPGTGKTLLAKAVAGEAQVPFFSISGSDFVEL-YVGVGASR-VRDLFKVA 270 >gi|146413306|ref|XP_001482624.1| hypothetical protein PGUG_05644 [Meyerozyma guilliermondii ATCC 6260] Length = 978 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVA---IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK V L+N + ++L A + P+ +L GP G GKT I++ A Sbjct: 509 VAGMSEAKEEVVEFVKFLQNPEKYEKLGAKI-----PRGAILSGPPGTGKTLIAKATAGE 563 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF V ++F E+ +VG + +RDL A Sbjct: 564 AGVPFYSVSGSEFVEM-FVGVGASR-VRDLFKTA 595 >gi|186475644|ref|YP_001857114.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] gi|184192103|gb|ACC70068.1| ATP-dependent metalloprotease FtsH [Burkholderia phymatum STM815] Length = 629 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|312378262|gb|EFR24888.1| hypothetical protein AND_10232 [Anopheles darlingi] Length = 244 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++V T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167 >gi|307268518|ref|ZP_07549893.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248] gi|312952665|ref|ZP_07771529.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102] gi|306515179|gb|EFM83719.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4248] gi|310629453|gb|EFQ12736.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0102] gi|315032985|gb|EFT44917.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0017] gi|315145395|gb|EFT89411.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2141] gi|315156269|gb|EFU00286.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0043] gi|315160785|gb|EFU04802.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0645] gi|315579384|gb|EFU91575.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0630] gi|327534062|gb|AEA92896.1| cell division protein FtsH [Enterococcus faecalis OG1RF] Length = 725 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282 >gi|290770264|gb|ADD62019.1| putative protein [uncultured organism] Length = 720 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + + L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 200 VAGQDEAKESLTEIVDFLHNPDKYSKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 254 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 255 ANVPFFSLAGSDFVEM-FVGVGASR-VRDL 282 >gi|295696291|ref|YP_003589529.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912] gi|295411893|gb|ADG06385.1| Vesicle-fusing ATPase [Bacillus tusciae DSM 2912] Length = 493 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 18/134 (13%) Query: 20 IIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR 75 I GQ+ AKR + AL R R + +QL + P K ILL GP G GKT +++ A Sbjct: 63 IGGQEHAKRELMEALDFLRYRDKIRQLG------IRPLKGILLTGPPGTGKTLMAKAAAT 116 Query: 76 LAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135 + F+ ++F E+ YVG ++ +RDL A R+S R E ++ A + +E + Sbjct: 117 YTDSSFVSASGSEFVEM-YVGVGAQR-VRDLFRRA----RQSARKEGKDSAIVFIDE--I 168 Query: 136 DALVGKTATSNTRE 149 D + G+ + +E Sbjct: 169 DVIGGRRGNHSHQE 182 >gi|290988970|ref|XP_002677143.1| predicted protein [Naegleria gruberi] gi|284090749|gb|EFC44399.1| predicted protein [Naegleria gruberi] Length = 472 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG GVGKT +++ +A AG PF ++F E+ +VG ++ IR+L A Sbjct: 50 LPKGVLLVGKPGVGKTLLAKAIAGEAGVPFFFCSGSEFDEM-FVGVGAKR-IRELFAAA 106 >gi|257068458|ref|YP_003154713.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium DSM 4810] gi|310943121|sp|C7MC16|FTSH_BRAFD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|256559276|gb|ACU85123.1| membrane protease FtsH catalytic subunit [Brachybacterium faecium DSM 4810] Length = 704 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 209 IPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVEM-FVGVGASR-VRDLFNTA 265 >gi|227520050|ref|ZP_03950099.1| cell division protein FtsH [Enterococcus faecalis TX0104] gi|227555911|ref|ZP_03985958.1| cell division protein FtsH [Enterococcus faecalis HH22] gi|307276454|ref|ZP_07557577.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134] gi|307278664|ref|ZP_07559734.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860] gi|227072598|gb|EEI10561.1| cell division protein FtsH [Enterococcus faecalis TX0104] gi|227174968|gb|EEI55940.1| cell division protein FtsH [Enterococcus faecalis HH22] gi|306504724|gb|EFM73924.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0860] gi|306506934|gb|EFM76081.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2134] gi|315151134|gb|EFT95150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0012] gi|315168158|gb|EFU12175.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1341] gi|315573573|gb|EFU85764.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309B] Length = 725 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 226 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 282 >gi|215483240|ref|YP_002325447.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii AB307-0294] gi|332853310|ref|ZP_08434689.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6013150] gi|213987093|gb|ACJ57392.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii AB307-0294] gi|332728709|gb|EGJ60072.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter baumannii 6013150] Length = 743 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A A+A A++ A L+ P + + GPTGVGKT ++++L Sbjct: 438 DLKRVVFGQDEAITALASAIKLSR------AGLKSPDKPVGSFVFAGPTGVGKTEVTKQL 491 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 A+L G ++ +++++ E GYVG + ++ D + Sbjct: 492 AKLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 536 >gi|163791060|ref|ZP_02185481.1| cell division protein FtsH [Carnobacterium sp. AT7] gi|159873705|gb|EDP67788.1| cell division protein FtsH [Carnobacterium sp. AT7] Length = 718 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFENA 278 >gi|74195574|dbj|BAE39598.1| unnamed protein product [Mus musculus] Length = 418 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVK-KYLGEG-PRMVRDVFRLA 254 >gi|51893679|ref|YP_076370.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81388257|sp|Q67LC0|FTSH1_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 1 gi|51857368|dbj|BAD41526.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 594 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ ILL GP G GKT ++R LA AG PF + F E+ + G + +R L D A Sbjct: 178 IPRGILLSGPPGTGKTLLARALAGEAGVPFFSASGSDFVEL-FAGTGAAR-VRALFDRA 234 >gi|194335260|ref|YP_002017054.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme BU-1] gi|194307737|gb|ACF42437.1| ATP-dependent metalloprotease FtsH [Pelodictyon phaeoclathratiforme BU-1] Length = 697 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 285 >gi|310779128|ref|YP_003967461.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM 2926] gi|309748451|gb|ADO83113.1| membrane protease FtsH catalytic subunit [Ilyobacter polytropus DSM 2926] Length = 738 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+G G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 287 IPKGVLLLGAPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFNKA 343 >gi|293382699|ref|ZP_06628624.1| cell division protein FtsH [Enterococcus faecalis R712] gi|312908595|ref|ZP_07767537.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 512] gi|291079859|gb|EFE17223.1| cell division protein FtsH [Enterococcus faecalis R712] gi|310625382|gb|EFQ08665.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis DAPTO 512] Length = 726 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283 >gi|229550494|ref|ZP_04439219.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200] gi|307286956|ref|ZP_07567031.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109] gi|312901063|ref|ZP_07760352.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470] gi|229304351|gb|EEN70347.1| cell division protein FtsH [Enterococcus faecalis ATCC 29200] gi|306501902|gb|EFM71191.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0109] gi|311291809|gb|EFQ70365.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0470] gi|315026777|gb|EFT38709.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX2137] gi|315028816|gb|EFT40748.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4000] gi|315147113|gb|EFT91129.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX4244] gi|315165843|gb|EFU09860.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1302] gi|315171402|gb|EFU15419.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1342] gi|315172635|gb|EFU16652.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX1346] gi|315582079|gb|EFU94270.1| ATP-dependent metallopeptidase HflB [Enterococcus faecalis TX0309A] Length = 726 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283 >gi|172041364|ref|YP_001801078.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109] gi|171852668|emb|CAQ05644.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109] Length = 894 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R ++ EL + IIGQ DA +AV+ A+R R R A L+D P + + Sbjct: 508 FKLTEEESSRLLDMEGELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPNRPSGSFI 561 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 562 FAGPSGVGKTELSKALAEF 580 >gi|168185579|ref|ZP_02620214.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] gi|169296515|gb|EDS78648.1| putative Cell division protease FtsH homolog [Clostridium botulinum C str. Eklund] Length = 611 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL + A Sbjct: 195 LPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA 251 >gi|294101778|ref|YP_003553636.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM 12261] gi|293616758|gb|ADE56912.1| ATP-dependent metalloprotease FtsH [Aminobacterium colombiense DSM 12261] Length = 639 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT ++R A A PF V + F E+ +VG + +RDL + A Sbjct: 188 VPKGVLLLGPPGTGKTLLARAAAGEADVPFFSVSGSDFVEM-FVGVGAAR-VRDLFEQA 244 >gi|283836276|ref|ZP_06356017.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC 29220] gi|291067639|gb|EFE05748.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC 29220] Length = 644 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|257877910|ref|ZP_05657563.1| peptidase M41 [Enterococcus casseliflavus EC20] gi|257812076|gb|EEV40896.1| peptidase M41 [Enterococcus casseliflavus EC20] Length = 702 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|254574390|ref|XP_002494304.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease [Pichia pastoris GS115] gi|238034103|emb|CAY72125.1| Component, with Yta12p, of the mitochondrial inner membrane m-AAA protease [Pichia pastoris GS115] Length = 710 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + P+ +L GP G GKT +++ A AG PF+ V ++F E+ Sbjct: 293 LKNPKKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 346 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 347 FVGVGASR-VRDLFQQA 362 >gi|229546905|ref|ZP_04435630.1| cell division protein FtsH [Enterococcus faecalis TX1322] gi|229307833|gb|EEN73820.1| cell division protein FtsH [Enterococcus faecalis TX1322] Length = 726 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 227 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 283 >gi|227552663|ref|ZP_03982712.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330] gi|257888631|ref|ZP_05668284.1| peptidase M41 [Enterococcus faecium 1,141,733] gi|257897414|ref|ZP_05677067.1| peptidase M41 [Enterococcus faecium Com12] gi|293378828|ref|ZP_06624983.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1] gi|227178192|gb|EEI59164.1| M41 family endopeptidase FtsH [Enterococcus faecium TX1330] gi|257824685|gb|EEV51617.1| peptidase M41 [Enterococcus faecium 1,141,733] gi|257833979|gb|EEV60400.1| peptidase M41 [Enterococcus faecium Com12] gi|292642369|gb|EFF60524.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium PC4.1] Length = 703 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|237730098|ref|ZP_04560579.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2] gi|226908704|gb|EEH94622.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2] Length = 647 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|182680533|ref|YP_001834679.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] gi|182636416|gb|ACB97190.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] Length = 640 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|114570962|ref|YP_757642.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10] gi|114341424|gb|ABI66704.1| membrane protease FtsH catalytic subunit [Maricaulis maris MCS10] Length = 628 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGALLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|329939478|ref|ZP_08288814.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus M045] gi|329301707|gb|EGG45601.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus M045] Length = 841 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589 >gi|327398708|ref|YP_004339577.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411] gi|327181337|gb|AEA33518.1| ATP-dependent metalloprotease FtsH [Hippea maritima DSM 10411] Length = 599 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 185 IPKGVLLVGAPGTGKTLVAKAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFNQA 241 >gi|323144909|ref|ZP_08079472.1| cell division protease FtsH [Succinatimonas hippei YIT 12066] gi|322415307|gb|EFY06078.1| cell division protease FtsH [Succinatimonas hippei YIT 12066] Length = 665 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ A Sbjct: 184 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFQTA 240 >gi|256828068|ref|YP_003156796.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM 4028] gi|256577244|gb|ACU88380.1| ATP-dependent metalloprotease FtsH [Desulfomicrobium baculatum DSM 4028] Length = 637 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 185 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGAAR-VRDL 237 >gi|227494494|ref|ZP_03924810.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM 15436] gi|226832228|gb|EEH64611.1| ATP-dependent metalloprotease FtsH [Actinomyces coleocanis DSM 15436] Length = 670 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L N R Q++ A + P+ +LL GP G GKT +++ +A A PF + ++F E+ Sbjct: 190 LANAERYQKVGAKV-----PRGVLLYGPPGTGKTLLAKAVAGEAEVPFFSISGSEFMEL- 243 Query: 94 YVGRNVEQIIRDLVDVA 110 YVG + +R+L D A Sbjct: 244 YVGVGASR-VRELFDKA 259 >gi|160942939|ref|ZP_02090178.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii M21/2] gi|158445840|gb|EDP22843.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii M21/2] Length = 769 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 L + +IGQ +A VA A++ R R ADL P + + VGPTGVGKT + ++LA Sbjct: 476 LKQKVIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQLAE 529 Query: 76 L---AGAPFIKVEVTKFTEIGYVGRNV 99 P I+++++++ E V R + Sbjct: 530 QLFDGPDPLIRLDMSEYMEKYAVSRMI 556 >gi|149689884|ref|XP_001503243.1| PREDICTED: ATPase family, AAA domain containing 1 [Equus caballus] Length = 361 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|126734140|ref|ZP_01749887.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter sp. CCS2] gi|126717006|gb|EBA13870.1| ATP-dependent Clp protease, ATP-binding subunit ClpA, putative [Roseobacter sp. CCS2] Length = 759 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 444 KDLEKSLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 497 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 498 VAKQLADTLGVELMRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 548 >gi|161520727|ref|YP_001584154.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|160344777|gb|ABX17862.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] Length = 676 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 209 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 262 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 263 FVGVGAAR-VRDLFEQA 278 >gi|157109980|ref|XP_001650903.1| aaa atpase [Aedes aegypti] gi|108878840|gb|EAT43065.1| aaa atpase [Aedes aegypti] Length = 399 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++V T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167 >gi|134295360|ref|YP_001119095.1| FtsH peptidase [Burkholderia vietnamiensis G4] gi|134138517|gb|ABO54260.1| membrane protease FtsH catalytic subunit [Burkholderia vietnamiensis G4] Length = 631 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|284801329|ref|YP_003413194.1| ATP-dependent protease [Listeria monocytogenes 08-5578] gi|284994471|ref|YP_003416239.1| ATP-dependent protease [Listeria monocytogenes 08-5923] gi|284056891|gb|ADB67832.1| ATP-dependent protease [Listeria monocytogenes 08-5578] gi|284059938|gb|ADB70877.1| ATP-dependent protease [Listeria monocytogenes 08-5923] Length = 724 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483 Query: 78 GA--PFIKVEVTKFTE-----------IGYVGR 97 G I++++++F E GYVG Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|260198638|ref|ZP_05766129.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium tuberculosis T46] gi|289441026|ref|ZP_06430770.1| probable ATP-dependent clp protease ATP-binding subunit clpC [Mycobacterium tuberculosis T46] gi|289413945|gb|EFD11185.1| probable ATP-dependent clp protease ATP-binding subunit clpC [Mycobacterium tuberculosis T46] Length = 652 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 415 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 468 Query: 74 A 74 A Sbjct: 469 A 469 >gi|254694352|ref|ZP_05156180.1| FtsH, cell division protein FtsH [Brucella abortus bv. 3 str. Tulya] Length = 468 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 13 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 69 >gi|215489515|ref|YP_002331946.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O127:H6 str. E2348/69] gi|239977372|sp|B7UQI0|MIAA_ECO27 RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase gi|215267587|emb|CAS12042.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Escherichia coli O127:H6 str. E2348/69] Length = 316 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 11/108 (10%) Query: 45 ADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE---VTKFTEIGYVGRNVEQ 101 +D+ +PK I L+GPT GKTA++ L ++ I V+ + K +IG NVE+ Sbjct: 2 SDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNVEE 61 Query: 102 II---RDLVDV----AINIVRESRRDEVREQASINAEERILDALVGKT 142 ++ L+D+ + RRD + E A I A RI LVG T Sbjct: 62 LLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRI-PLLVGGT 108 >gi|260816555|ref|XP_002603036.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae] gi|229288351|gb|EEN59048.1| hypothetical protein BRAFLDRAFT_123994 [Branchiostoma floridae] Length = 572 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ +VG + +R+L A Sbjct: 360 LPKGVLLVGPPGTGKTLLARAVAGEADVPFFYASGSEFDEM-FVGVGASR-VRNLFTAA 416 >gi|213983195|ref|NP_001135501.1| ATPase family, AAA domain containing 1 [Xenopus (Silurana) tropicalis] gi|195540119|gb|AAI67903.1| Unknown (protein for MGC:135617) [Xenopus (Silurana) tropicalis] Length = 360 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTMIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|154507941|ref|ZP_02043583.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC 17982] gi|153797575|gb|EDN79995.1| hypothetical protein ACTODO_00427 [Actinomyces odontolyticus ATCC 17982] Length = 866 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA RAV+ A+R R R A L D P + L +GPTGVGKT +++ L Sbjct: 571 ELGKRLIGQKDAVRAVSDAVR-RSR-----AGLSDPNRPTGSFLFLGPTGVGKTELAKAL 624 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGRNV 99 A +++++++++E V R V Sbjct: 625 AEFLFDDERAMVRIDMSEYSEKHSVARLV 653 >gi|118347625|ref|XP_001007289.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila] gi|89289056|gb|EAR87044.1| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila SB210] Length = 888 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL GP G GKT +++ A AG PF + + F E+ +VG + +RDL A Sbjct: 433 LPKGALLTGPPGTGKTLLAKACAGEAGVPFFFISGSDFVEM-FVGVGASR-VRDLFKQA 489 >gi|329663402|ref|NP_001192510.1| ATPase family, AAA domain containing 1 [Bos taurus] gi|297490712|ref|XP_002698415.1| PREDICTED: ATPase family, AAA domain containing 1 [Bos taurus] gi|296472878|gb|DAA14993.1| ATPase family, AAA domain containing 1 [Bos taurus] Length = 361 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|78097112|ref|NP_001030174.1| ATPase family AAA domain-containing protein 1 [Rattus norvegicus] gi|81908923|sp|Q505J9|ATAD1_RAT RecName: Full=ATPase family AAA domain-containing protein 1 gi|63101569|gb|AAH94514.1| ATPase family, AAA domain containing 1 [Rattus norvegicus] gi|149062717|gb|EDM13140.1| ATPase family, AAA domain containing 1 [Rattus norvegicus] Length = 361 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|31377644|ref|NP_116199.2| ATPase family AAA domain-containing protein 1 [Homo sapiens] gi|31560168|ref|NP_080763.2| ATPase family AAA domain-containing protein 1 [Mus musculus] gi|109089823|ref|XP_001102081.1| PREDICTED: ATPase family AAA domain-containing protein 1 isoform 1 [Macaca mulatta] gi|114631640|ref|XP_001138404.1| PREDICTED: hypothetical protein LOC450580 isoform 2 [Pan troglodytes] gi|114631642|ref|XP_001138493.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi|114631644|ref|XP_001138572.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] gi|114631646|ref|XP_507897.2| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] gi|194042439|ref|XP_001928012.1| PREDICTED: ATPase family AAA domain-containing protein 1 [Sus scrofa] gi|291404372|ref|XP_002718538.1| PREDICTED: ATPase family, AAA domain containing 1 [Oryctolagus cuniculus] gi|301757164|ref|XP_002914430.1| PREDICTED: ATPase family AAA domain-containing protein 1-like [Ailuropoda melanoleuca] gi|74762551|sp|Q8NBU5|ATAD1_HUMAN RecName: Full=ATPase family AAA domain-containing protein 1 gi|78099816|sp|Q9D5T0|ATAD1_MOUSE RecName: Full=ATPase family AAA domain-containing protein 1 gi|12853110|dbj|BAB29643.1| unnamed protein product [Mus musculus] gi|22137685|gb|AAH29085.1| Atad1 protein [Mus musculus] gi|22761173|dbj|BAC11482.1| unnamed protein product [Homo sapiens] gi|26326707|dbj|BAC27097.1| unnamed protein product [Mus musculus] gi|26329327|dbj|BAC28402.1| unnamed protein product [Mus musculus] gi|28175431|gb|AAH43051.1| ATPase family, AAA domain containing 1 [Mus musculus] gi|55957145|emb|CAI16701.1| ATPase family, AAA domain containing 1 [Homo sapiens] gi|74139190|dbj|BAE38481.1| unnamed protein product [Mus musculus] gi|74207473|dbj|BAE30915.1| unnamed protein product [Mus musculus] gi|74219637|dbj|BAE29586.1| unnamed protein product [Mus musculus] gi|119570562|gb|EAW50177.1| ATPase family, AAA domain containing 1, isoform CRA_a [Homo sapiens] gi|119570564|gb|EAW50179.1| ATPase family, AAA domain containing 1, isoform CRA_a [Homo sapiens] gi|148709781|gb|EDL41727.1| ATPase family, AAA domain containing 1, isoform CRA_a [Mus musculus] Length = 361 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|238026784|ref|YP_002911015.1| FtsH endopeptidase [Burkholderia glumae BGR1] gi|237875978|gb|ACR28311.1| FtsH endopeptidase [Burkholderia glumae BGR1] Length = 629 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|196013470|ref|XP_002116596.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens] gi|190580872|gb|EDV20952.1| hypothetical protein TRIADDRAFT_31113 [Trichoplax adhaerens] Length = 506 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P ILL+GP G GKT ++R +A AG PF ++F E+ +VG + +R+L A Sbjct: 105 LPTGILLIGPPGTGKTLLARAVAGEAGVPFFFCSGSEFDEM-FVGVGAAR-VRNLFAAA 161 >gi|171910598|ref|ZP_02926068.1| negative regulator of genetic competence ClpC/MecB [Verrucomicrobium spinosum DSM 4136] Length = 846 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 21/97 (21%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + IIGQ +A A++ ALR R R ADL+D P + + +GPTGVGKT +++ L Sbjct: 523 ELKKRIIGQDEAVIAISKALR-RSR-----ADLKDPKRPIGSFIFLGPTGVGKTFLAKNL 576 Query: 74 ARL---AGAPFIKVEVTKFTE-----------IGYVG 96 A + I+++++++ E GYVG Sbjct: 577 AEFMFGSAESLIQLDMSEYMEKHTASRLIGAPPGYVG 613 >gi|158320208|ref|YP_001512715.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158140407|gb|ABW18719.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 MPK I+L GP G GKT +++ LA AG F+ V + F ++ Y G Sbjct: 186 MPKGIILYGPPGTGKTLMAKALASEAGVDFLAVSGSDFVQV-YAG 229 >gi|77166027|ref|YP_344552.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707] gi|76884341|gb|ABA59022.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC 19707] Length = 641 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P+ +L+VGP G GKT ++R +A A PF + + F E+ Sbjct: 175 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 228 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 229 FVGVGASR-VRDMFENA 244 >gi|28377431|ref|NP_784323.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum WCFS1] gi|254555614|ref|YP_003062031.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum JDM1] gi|308179644|ref|YP_003923772.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum subsp. plantarum ST-III] gi|81586545|sp|Q88Z31|FTSH_LACPL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|310943135|sp|C6VKW6|FTSH_LACPJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|28270263|emb|CAD63164.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum WCFS1] gi|51537265|gb|AAU05734.1| FtsH [Lactobacillus plantarum] gi|254044541|gb|ACT61334.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum JDM1] gi|308045135|gb|ADN97678.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 745 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 219 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 275 >gi|319775209|ref|YP_004137697.1| protein disaggregation chaperone [Haemophilus influenzae F3047] gi|317449800|emb|CBY86008.1| protein disaggregation chaperone [Haemophilus influenzae F3047] Length = 856 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|254827942|ref|ZP_05232629.1| ATP-dependent protease [Listeria monocytogenes FSL N3-165] gi|258600324|gb|EEW13649.1| ATP-dependent protease [Listeria monocytogenes FSL N3-165] Length = 724 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483 Query: 78 GA--PFIKVEVTKFTE-----------IGYVGR 97 G I++++++F E GYVG Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|213622276|ref|ZP_03375059.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 147 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 52 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 106 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 107 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 138 >gi|254832257|ref|ZP_05236912.1| ATP-dependent protease [Listeria monocytogenes 10403S] Length = 724 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483 Query: 78 GA--PFIKVEVTKFTE-----------IGYVGR 97 G I++++++F E GYVG Sbjct: 484 GTTEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|254255490|ref|ZP_04948806.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158] gi|124901227|gb|EAY71977.1| ATP-dependent Zn protease [Burkholderia dolosa AUO158] Length = 638 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 191 LRNPERYQRLGGKI-----PKGVLIVGAPGTGKTLLARAVAGEAAVPFFTISGSAFVEM- 244 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 245 FVGVGAAR-VRDLFEQA 260 >gi|254252701|ref|ZP_04946019.1| Peptidase M41 [Burkholderia dolosa AUO158] gi|124895310|gb|EAY69190.1| Peptidase M41 [Burkholderia dolosa AUO158] Length = 628 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 238 >gi|268555362|ref|XP_002635669.1| C. briggsae CBR-FIGL-1 protein [Caenorhabditis briggsae] gi|75005140|sp|Q60QD1|FIGL1_CAEBR RecName: Full=Fidgetin-like protein 1 gi|187022331|emb|CAP38575.1| CBR-FIGL-1 protein [Caenorhabditis briggsae AF16] Length = 591 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 + G + AK+A+ + ++R + LR PK +LL GP G GKT I R +A A A Sbjct: 318 VAGLEGAKKALKEIVVLPFQRPDIFTGLR--APPKGVLLFGPPGTGKTMIGRCVASQAQA 375 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T +VG E+++R L VA Sbjct: 376 TFFNISASSLTS-KWVGEG-EKLVRALFSVA 404 >gi|71030708|ref|XP_764996.1| hypothetical protein [Theileria parva strain Muguga] gi|68351952|gb|EAN32713.1| hypothetical protein TP02_0430 [Theileria parva] Length = 881 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A A PF + + F E+ +VG + +RDL D A Sbjct: 359 IPKGVLLCGPPGTGKTLLAKAVAGEANVPFYSMSGSDFIEV-FVGIGPSR-VRDLFDKA 415 >gi|325524577|gb|EGD02604.1| FtsH endopeptidase [Burkholderia sp. TJI49] Length = 471 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|319948880|ref|ZP_08022993.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4] gi|319437482|gb|EFV92489.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4] Length = 883 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 515 ELHKRIIGQEDAIKAVSRAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568 Query: 74 A 74 A Sbjct: 569 A 569 >gi|316973259|gb|EFV56879.1| ATPase, AAA family [Trichinella spiralis] Length = 1151 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 +PK LL+GP G GKT +++ ++ A PF+ V T+F EI Sbjct: 636 LPKGALLLGPPGCGKTLLAKAVSAEASVPFLAVNGTEFVEI 676 >gi|193211748|ref|YP_001997701.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] gi|193085225|gb|ACF10501.1| ATP-dependent metalloprotease FtsH [Chlorobaculum parvum NCIB 8327] Length = 703 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 285 >gi|15021761|gb|AAK77908.1|AF397903_1 AAA-metalloprotease FtsH [Pisum sativum] Length = 810 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 343 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 396 Query: 94 YVG------RNVEQIIRDLVDVAINI 113 +VG RN+ Q R I I Sbjct: 397 FVGVGPSRVRNLFQEARQCAPSIIFI 422 >gi|24987642|pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 69 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 100 >gi|69245450|ref|ZP_00603445.1| Peptidase M41, FtsH [Enterococcus faecium DO] gi|257879861|ref|ZP_05659514.1| peptidase M41 [Enterococcus faecium 1,230,933] gi|257882587|ref|ZP_05662240.1| peptidase M41 [Enterococcus faecium 1,231,502] gi|257886015|ref|ZP_05665668.1| peptidase M41 [Enterococcus faecium 1,231,501] gi|257891702|ref|ZP_05671355.1| peptidase M41 [Enterococcus faecium 1,231,410] gi|257894177|ref|ZP_05673830.1| peptidase M41 [Enterococcus faecium 1,231,408] gi|258614290|ref|ZP_05712060.1| cell division protein FtsH [Enterococcus faecium DO] gi|260559533|ref|ZP_05831714.1| peptidase M41 [Enterococcus faecium C68] gi|261206684|ref|ZP_05921382.1| peptidase M41 [Enterococcus faecium TC 6] gi|289565046|ref|ZP_06445500.1| peptidase M41 [Enterococcus faecium D344SRF] gi|293553699|ref|ZP_06674323.1| putative cell division protease FtsH [Enterococcus faecium E1039] gi|293563200|ref|ZP_06677656.1| putative cell division protease FtsH [Enterococcus faecium E1162] gi|293570122|ref|ZP_06681202.1| putative cell division protease FtsH [Enterococcus faecium E1071] gi|294614893|ref|ZP_06694784.1| putative cell division protease FtsH [Enterococcus faecium E1636] gi|294618635|ref|ZP_06698174.1| putative cell division protease FtsH [Enterococcus faecium E1679] gi|294623711|ref|ZP_06702544.1| putative cell division protease FtsH [Enterococcus faecium U0317] gi|314938208|ref|ZP_07845508.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a04] gi|314943103|ref|ZP_07849902.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C] gi|314949300|ref|ZP_07852643.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082] gi|314952233|ref|ZP_07855248.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A] gi|314992091|ref|ZP_07857541.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B] gi|314996274|ref|ZP_07861330.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a01] gi|68195832|gb|EAN10268.1| Peptidase M41, FtsH [Enterococcus faecium DO] gi|257814089|gb|EEV42847.1| peptidase M41 [Enterococcus faecium 1,230,933] gi|257818245|gb|EEV45573.1| peptidase M41 [Enterococcus faecium 1,231,502] gi|257821871|gb|EEV49001.1| peptidase M41 [Enterococcus faecium 1,231,501] gi|257828062|gb|EEV54688.1| peptidase M41 [Enterococcus faecium 1,231,410] gi|257830556|gb|EEV57163.1| peptidase M41 [Enterococcus faecium 1,231,408] gi|260074632|gb|EEW62953.1| peptidase M41 [Enterococcus faecium C68] gi|260079177|gb|EEW66870.1| peptidase M41 [Enterococcus faecium TC 6] gi|289163253|gb|EFD11099.1| peptidase M41 [Enterococcus faecium D344SRF] gi|291587494|gb|EFF19378.1| putative cell division protease FtsH [Enterococcus faecium E1071] gi|291592179|gb|EFF23797.1| putative cell division protease FtsH [Enterococcus faecium E1636] gi|291595154|gb|EFF26492.1| putative cell division protease FtsH [Enterococcus faecium E1679] gi|291596926|gb|EFF28144.1| putative cell division protease FtsH [Enterococcus faecium U0317] gi|291602274|gb|EFF32502.1| putative cell division protease FtsH [Enterococcus faecium E1039] gi|291604850|gb|EFF34328.1| putative cell division protease FtsH [Enterococcus faecium E1162] gi|313589518|gb|EFR68363.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a01] gi|313593305|gb|EFR72150.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133B] gi|313595628|gb|EFR74473.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133A] gi|313598162|gb|EFR77007.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133C] gi|313642404|gb|EFS06984.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0133a04] gi|313644306|gb|EFS08886.1| ATP-dependent metallopeptidase HflB [Enterococcus faecium TX0082] Length = 703 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|16803037|ref|NP_464522.1| ATP-dependent protease [Listeria monocytogenes EGD-e] gi|47096329|ref|ZP_00233925.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes str. 1/2a F6854] gi|224500813|ref|ZP_03669162.1| ATP-dependent protease [Listeria monocytogenes Finland 1988] gi|224502688|ref|ZP_03670995.1| ATP-dependent protease [Listeria monocytogenes FSL R2-561] gi|254898829|ref|ZP_05258753.1| ATP-dependent protease [Listeria monocytogenes J0161] gi|254911682|ref|ZP_05261694.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes J2818] gi|254936008|ref|ZP_05267705.1| ATP-dependent protease [Listeria monocytogenes F6900] gi|16410399|emb|CAC99075.1| ATP-dependent protease [Listeria monocytogenes EGD-e] gi|47015287|gb|EAL06224.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes str. 1/2a F6854] gi|258608596|gb|EEW21204.1| ATP-dependent protease [Listeria monocytogenes F6900] gi|293589631|gb|EFF97965.1| negative regulator of genetic competence ClpC/MecB [Listeria monocytogenes J2818] Length = 724 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 21/93 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLAR-LA 77 +IGQ+DA + VA A+R R R L+ + P + L VGPTGVGKT + R LAR L Sbjct: 430 VIGQEDAVKKVAKAIR-RSR-----VGLKSKNRPIGSFLFVGPTGVGKTELGRTLARELF 483 Query: 78 GA--PFIKVEVTKFTE-----------IGYVGR 97 G I++++++F E GYVG Sbjct: 484 GTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGH 516 >gi|323698297|ref|ZP_08110209.1| ATP-dependent metalloprotease FtsH [Desulfovibrio sp. ND132] gi|323458229|gb|EGB14094.1| ATP-dependent metalloprotease FtsH [Desulfovibrio desulfuricans ND132] Length = 686 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 188 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDL 240 >gi|304440585|ref|ZP_07400470.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370927|gb|EFM24548.1| cell division protein FtsH [Peptoniphilus duerdenii ATCC BAA-1640] Length = 593 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL A Sbjct: 184 LPKGALLVGPPGTGKTLLAQAVAGEANVPFFSISGSEFVEM-FVGLGAAK-VRDLFKQA 240 >gi|302809402|ref|XP_002986394.1| hypothetical protein SELMODRAFT_123803 [Selaginella moellendorffii] gi|300145930|gb|EFJ12603.1| hypothetical protein SELMODRAFT_123803 [Selaginella moellendorffii] Length = 386 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 7/108 (6%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 LT + P +E+ + +Q+ + AV + L + +QL D PK +LL G Sbjct: 122 LTDSLRPEVTYAEIGGLELQKQEIREAVELPLTHPELYRQLGVD-----PPKGVLLYGAP 176 Query: 63 GVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 G GKT + + +A A FI+V ++F + Y+G +++RD+ ++A Sbjct: 177 GTGKTMLVKAVAHHTSAAFIRVVASEFVQ-KYLGEG-PRMMRDVFNLA 222 >gi|296220688|ref|XP_002756413.1| PREDICTED: ATPase family AAA domain-containing protein 1 [Callithrix jacchus] Length = 361 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|312194050|ref|YP_004014111.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c] gi|311225386|gb|ADP78241.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c] Length = 836 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL R +IGQQ A +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHRRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGRNV 99 A I+++++++ E V R V Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592 >gi|257871357|ref|ZP_05651010.1| peptidase M41 [Enterococcus gallinarum EG2] gi|257805521|gb|EEV34343.1| peptidase M41 [Enterococcus gallinarum EG2] Length = 697 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|240147503|ref|ZP_04746104.1| cell division protein FtsH [Roseburia intestinalis L1-82] gi|257200292|gb|EEU98576.1| cell division protein FtsH [Roseburia intestinalis L1-82] Length = 511 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 197 VAGQDEAKESLQEVVDFLHNPKKYSEIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 251 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 A PF + + F E+ +VG + +RDL Sbjct: 252 AKVPFFSLAGSDFVEM-FVGVGASR-VRDL 279 >gi|260814842|ref|XP_002602122.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae] gi|229287429|gb|EEN58134.1| hypothetical protein BRAFLDRAFT_234261 [Branchiostoma floridae] Length = 724 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT ++R +A A PF ++F E+ +VG + +R+L A Sbjct: 300 LPKGVLLVGPPGTGKTLLARAVAGEADVPFFYASGSEFDEM-FVGVGASR-VRNLFTAA 356 >gi|167562363|ref|ZP_02355279.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis EO147] gi|167574340|ref|ZP_02367214.1| ATP-dependent metalloprotease FtsH [Burkholderia oklahomensis C6786] Length = 628 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|15602303|ref|NP_245375.1| hypothetical protein PM0438 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720692|gb|AAK02522.1| FtsH [Pasteurella multocida subsp. multocida str. Pm70] Length = 639 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238 >gi|304321217|ref|YP_003854860.1| metalloprotease [Parvularcula bermudensis HTCC2503] gi|303300119|gb|ADM09718.1| metalloprotease [Parvularcula bermudensis HTCC2503] Length = 638 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|332289023|ref|YP_004419875.1| protein disaggregation chaperone [Gallibacterium anatis UMN179] gi|330431919|gb|AEC16978.1| protein disaggregation chaperone [Gallibacterium anatis UMN179] Length = 857 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVEAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A + I++++++F E V R V Sbjct: 619 ANFLFDSEDAMIRIDMSEFMEKHSVSRLV 647 >gi|296535982|ref|ZP_06898128.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] gi|296263693|gb|EFH10172.1| cell division protein FtsH [Roseomonas cervicalis ATCC 49957] Length = 640 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 189 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243 >gi|257868305|ref|ZP_05647958.1| peptidase M41 [Enterococcus casseliflavus EC30] gi|257874422|ref|ZP_05654075.1| peptidase M41 [Enterococcus casseliflavus EC10] gi|257802419|gb|EEV31291.1| peptidase M41 [Enterococcus casseliflavus EC30] gi|257808586|gb|EEV37408.1| peptidase M41 [Enterococcus casseliflavus EC10] Length = 702 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 276 >gi|300768964|ref|ZP_07078855.1| cell division protein FtsH [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493485|gb|EFK28662.1| cell division protein FtsH [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 750 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 224 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 280 >gi|221209996|ref|ZP_03582977.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1] gi|221170684|gb|EEE03150.1| cell division protease FtsH homolog [Burkholderia multivorans CGD1] Length = 655 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|170783529|ref|YP_001742022.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1] gi|150035016|gb|ABR67027.1| putative FtsH-like cell division protein [Arthrobacter sp. AK-1] Length = 676 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT ++R A AG PF + ++F E +G V ++ + + A Sbjct: 255 PKGVLLSGPPGTGKTLLARATAGEAGVPFFHISSSEFIEMVVGVGASRVRELFQAAREAA 314 Query: 111 INIV 114 +I+ Sbjct: 315 PSII 318 >gi|144897904|emb|CAM74768.1| ATP-dependent Zn proteases [Magnetospirillum gryphiswaldense MSR-1] Length = 642 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 189 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 243 >gi|159043170|ref|YP_001531964.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12] gi|157910930|gb|ABV92363.1| chaperone protein clpB [Dinoroseobacter shibae DFL 12] Length = 871 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 E+ R +IGQ+ A AVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 563 EIGRRVIGQKTAVNAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAV 616 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A + +++++++F E V R Sbjct: 617 AEFLFDDDSAMVRIDMSEFMEKHAVAR 643 >gi|72388294|ref|XP_844571.1| ATP-dependent zinc metallopeptidase [Trypanosoma brucei TREU927] gi|62175363|gb|AAX69506.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei] gi|62359685|gb|AAX80117.1| AFG3-like protein 2, putative [Trypanosoma brucei] gi|70801104|gb|AAZ11012.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 877 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 ++I G ++AK+ V LR+ R L A + P LL+GP G GKT +++ +A Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAKV-----PTGALLLGPPGTGKTLLAKAVA 364 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +G FI V + F E+ YVG + +R L +VA Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALR-VRQLFEVA 398 >gi|19076014|ref|NP_588514.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1 (predicted) [Schizosaccharomyces pombe 972h-] gi|74582247|sp|O59824|YME1_SCHPO RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog gi|3136033|emb|CAA19064.1| mitochondrial inner membrane i-AAA protease complex subunit Yme1 (predicted) [Schizosaccharomyces pombe] Length = 709 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT ++R +A A PF + ++F E+ YVG ++ +R+L A Sbjct: 299 LPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEM-YVGVGAKR-VRELFAAA 355 >gi|91783911|ref|YP_559117.1| FtsH-2 peptidase [Burkholderia xenovorans LB400] gi|91687865|gb|ABE31065.1| membrane protease FtsH catalytic subunit [Burkholderia xenovorans LB400] Length = 659 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R ++L + PK +L+VG G GKT +++ +A AG PF + + F E+ Sbjct: 189 LRNAERYRRLGGKI-----PKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSAFVEM- 242 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 243 FVGVGAAR-VRDLFEQA 258 >gi|53718995|ref|YP_107981.1| FtsH endopeptidase [Burkholderia pseudomallei K96243] gi|53725545|ref|YP_102540.1| cell division protein FtsH [Burkholderia mallei ATCC 23344] gi|76811845|ref|YP_333019.1| cell division protein FtsH [Burkholderia pseudomallei 1710b] gi|121598236|ref|YP_992623.1| cell division protein FtsH [Burkholderia mallei SAVP1] gi|124386453|ref|YP_001026575.1| cell division protein FtsH [Burkholderia mallei NCTC 10229] gi|126439432|ref|YP_001058525.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668] gi|126448487|ref|YP_001080140.1| cell division protein FtsH [Burkholderia mallei NCTC 10247] gi|126452144|ref|YP_001065785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106a] gi|134282887|ref|ZP_01769590.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305] gi|167002789|ref|ZP_02268579.1| cell division protein FtsH [Burkholderia mallei PRL-20] gi|167719065|ref|ZP_02402301.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei DM98] gi|167738063|ref|ZP_02410837.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 14] gi|167815247|ref|ZP_02446927.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 91] gi|167845200|ref|ZP_02470708.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei B7210] gi|167893752|ref|ZP_02481154.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 7894] gi|167902200|ref|ZP_02489405.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei NCTC 13177] gi|167910442|ref|ZP_02497533.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 112] gi|167918468|ref|ZP_02505559.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei BCC215] gi|217423524|ref|ZP_03455025.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576] gi|237811779|ref|YP_002896230.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346] gi|238563620|ref|ZP_00438574.2| cell division protease FtsH [Burkholderia mallei GB8 horse 4] gi|242316664|ref|ZP_04815680.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106b] gi|254177646|ref|ZP_04884301.1| cell division protein FtsH [Burkholderia mallei ATCC 10399] gi|254180202|ref|ZP_04886801.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655] gi|254188379|ref|ZP_04894890.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pasteur 52237] gi|254198030|ref|ZP_04904452.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13] gi|254199451|ref|ZP_04905817.1| cell division protein FtsH [Burkholderia mallei FMH] gi|254205764|ref|ZP_04912116.1| cell division protein FtsH [Burkholderia mallei JHU] gi|254258466|ref|ZP_04949520.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1710a] gi|254298036|ref|ZP_04965489.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e] gi|254358835|ref|ZP_04975108.1| cell division protein FtsH [Burkholderia mallei 2002721280] gi|52209409|emb|CAH35354.1| FtsH endopeptidase [Burkholderia pseudomallei K96243] gi|52428968|gb|AAU49561.1| cell division protein FtsH [Burkholderia mallei ATCC 23344] gi|76581298|gb|ABA50773.1| cell division protein FtsH [Burkholderia pseudomallei 1710b] gi|121227046|gb|ABM49564.1| cell division protein FtsH [Burkholderia mallei SAVP1] gi|124294473|gb|ABN03742.1| cell division protein FtsH [Burkholderia mallei NCTC 10229] gi|126218925|gb|ABN82431.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 668] gi|126225786|gb|ABN89326.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106a] gi|126241357|gb|ABO04450.1| cell division protein FtsH [Burkholderia mallei NCTC 10247] gi|134245973|gb|EBA46064.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 305] gi|147749047|gb|EDK56121.1| cell division protein FtsH [Burkholderia mallei FMH] gi|147753207|gb|EDK60272.1| cell division protein FtsH [Burkholderia mallei JHU] gi|148027962|gb|EDK85983.1| cell division protein FtsH [Burkholderia mallei 2002721280] gi|157807652|gb|EDO84822.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 406e] gi|157936058|gb|EDO91728.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pasteur 52237] gi|160698685|gb|EDP88655.1| cell division protein FtsH [Burkholderia mallei ATCC 10399] gi|169654771|gb|EDS87464.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei S13] gi|184210742|gb|EDU07785.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1655] gi|217393382|gb|EEC33403.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 576] gi|237505527|gb|ACQ97845.1| cell division protease FtsH [Burkholderia pseudomallei MSHR346] gi|238520336|gb|EEP83797.1| cell division protease FtsH [Burkholderia mallei GB8 horse 4] gi|242139903|gb|EES26305.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1106b] gi|243061550|gb|EES43736.1| cell division protein FtsH [Burkholderia mallei PRL-20] gi|254217155|gb|EET06539.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 1710a] Length = 628 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|296448894|ref|ZP_06890716.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] gi|296253598|gb|EFH00803.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] Length = 478 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 25 IPRGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 81 >gi|300780448|ref|ZP_07090304.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Corynebacterium genitalium ATCC 33030] gi|300534558|gb|EFK55617.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Corynebacterium genitalium ATCC 33030] Length = 967 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT + S R + EL + IIGQ DA +AV+ A+R R R A L+D P + + Sbjct: 521 FKLTESESSRLLHMEDELHQRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 574 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 575 FAGPSGVGKTELSKALAEF 593 >gi|215413520|ref|ZP_03422192.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium tuberculosis 94_M4241A] gi|298527075|ref|ZP_07014484.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298496869|gb|EFI32163.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 848 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 513 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 566 Query: 74 A 74 A Sbjct: 567 A 567 >gi|260809218|ref|XP_002599403.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae] gi|229284681|gb|EEN55415.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae] Length = 396 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 155 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKLVRALFAVA 210 >gi|197264149|ref|ZP_03164223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242404|gb|EDY25024.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 647 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|189353088|ref|YP_001948715.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|189337110|dbj|BAG46179.1| cell division protease [Burkholderia multivorans ATCC 17616] Length = 655 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPERYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|134046686|ref|YP_001098171.1| ATPase central domain-containing protein [Methanococcus maripaludis C5] gi|132664311|gb|ABO35957.1| AAA ATPase, central domain protein [Methanococcus maripaludis C5] Length = 371 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 +IGQ DAK+ I ++ ++ E PKNIL G G GKT ++R LA Sbjct: 128 VIGQLDAKKKCKIVIKYLEN-----PEIFGEWAPKNILFYGSPGTGKTMLARALATETEV 182 Query: 80 PFIKVEVTKFTEIG-YVGRNVEQI 102 P ++ T+ IG +VG +QI Sbjct: 183 PLYLIKATEL--IGDHVGDGSKQI 204 >gi|161525193|ref|YP_001580205.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189350068|ref|YP_001945696.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|221201969|ref|ZP_03575005.1| cell division protease FtsH [Burkholderia multivorans CGD2M] gi|221204901|ref|ZP_03577918.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia multivorans CGD2] gi|221213878|ref|ZP_03586851.1| cell division protease FtsH [Burkholderia multivorans CGD1] gi|160342622|gb|ABX15708.1| ATP-dependent metalloprotease FtsH [Burkholderia multivorans ATCC 17616] gi|189334090|dbj|BAG43160.1| cell division protease [Burkholderia multivorans ATCC 17616] gi|221166055|gb|EED98528.1| cell division protease FtsH [Burkholderia multivorans CGD1] gi|221175758|gb|EEE08188.1| ATP-dependent metallopeptidase HflB subfamily [Burkholderia multivorans CGD2] gi|221178052|gb|EEE10463.1| cell division protease FtsH [Burkholderia multivorans CGD2M] Length = 631 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] Length = 546 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 187 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241 >gi|21672643|ref|NP_660710.1| cell division protein FtsH [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008486|sp|Q8K9G8|FTSH_BUCAP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|21623278|gb|AAM67921.1| cell division [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 613 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 184 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEHA 240 >gi|684978|dbj|BAA03839.1| OSD1 [Saccharomyces cerevisiae] Length = 747 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365 >gi|323452123|gb|EGB07998.1| hypothetical protein AURANDRAFT_71725 [Aureococcus anophagefferens] Length = 1039 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P+ ++L GP G GKT ++R +A AG PFI ++F E+ +VG +I Sbjct: 194 CPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRI 243 >gi|319897647|ref|YP_004135844.1| protein disaggregation chaperone [Haemophilus influenzae F3031] gi|317433153|emb|CBY81527.1| protein disaggregation chaperone [Haemophilus influenzae F3031] Length = 856 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|301169578|emb|CBW29179.1| protein disaggregation chaperone [Haemophilus influenzae 10810] Length = 856 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|302755941|ref|XP_002961394.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii] gi|302798232|ref|XP_002980876.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii] gi|300151415|gb|EFJ18061.1| hypothetical protein SELMODRAFT_178441 [Selaginella moellendorffii] gi|300170053|gb|EFJ36654.1| hypothetical protein SELMODRAFT_164653 [Selaginella moellendorffii] Length = 661 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 +PK +LLVGP G GKT +++ +A AG PF ++F E +G R V + + Sbjct: 250 LPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRTLFQTAKKK 309 Query: 110 AINIV 114 A IV Sbjct: 310 APCIV 314 >gi|295103896|emb|CBL01440.1| ATPases with chaperone activity, ATP-binding subunit [Faecalibacterium prausnitzii SL3/3] Length = 747 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 L + +IGQ +A VA A++ R R ADL P + + VGPTGVGKT + ++LA Sbjct: 454 LKQKVIGQDEAVHLVAQAIK-RSR-----ADLSGRRRPASFIFVGPTGVGKTELVKQLAE 507 Query: 76 L---AGAPFIKVEVTKFTEIGYVGRNV 99 P I+++++++ E V R + Sbjct: 508 QLFDGPDPLIRLDMSEYMEKYAVSRMI 534 >gi|261820121|ref|YP_003258227.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163] gi|261604134|gb|ACX86620.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163] Length = 651 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|253686967|ref|YP_003016157.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753545|gb|ACT11621.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 649 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|224052230|ref|XP_002186992.1| PREDICTED: ATPase family, AAA domain containing 1 [Taeniopygia guttata] Length = 362 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|198242374|ref|YP_002217268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936890|gb|ACH74223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 647 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|167836219|ref|ZP_02463102.1| ATP-dependent metalloprotease FtsH [Burkholderia thailandensis MSMB43] Length = 628 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|167823656|ref|ZP_02455127.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei 9] gi|226196166|ref|ZP_03791751.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pakistan 9] gi|225931752|gb|EEH27754.1| ATP-dependent metalloprotease FtsH [Burkholderia pseudomallei Pakistan 9] Length = 628 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|124028002|ref|YP_001013322.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM 5456] gi|123978696|gb|ABM80977.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM 5456] Length = 405 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT +++ +A + A FI+V ++F YVG +I+R++ +A Sbjct: 165 PKGVLLYGPPGCGKTLLAKAVASMTNATFIRVVASEFVH-KYVGEGA-RIVREVFKLA 220 >gi|113460868|ref|YP_718935.1| FtsH peptidase [Haemophilus somnus 129PT] gi|112822911|gb|ABI25000.1| membrane protease FtsH catalytic subunit [Haemophilus somnus 129PT] Length = 612 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPKGILMVGPPGTGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|62181804|ref|YP_218221.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194442507|ref|YP_002042552.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447870|ref|YP_002047324.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471603|ref|ZP_03077587.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195873641|ref|ZP_02697399.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197248059|ref|YP_002148220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205357195|ref|ZP_02345811.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205358490|ref|ZP_02656962.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359196|ref|ZP_02668061.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359745|ref|ZP_02831638.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360607|ref|ZP_02684667.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|62129437|gb|AAX67140.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194401170|gb|ACF61392.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406174|gb|ACF66393.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457967|gb|EDX46806.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633776|gb|EDX52190.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211762|gb|ACH49159.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205323245|gb|EDZ11084.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333758|gb|EDZ20522.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337763|gb|EDZ24527.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343557|gb|EDZ30321.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348591|gb|EDZ35222.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322716291|gb|EFZ07862.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 647 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|16800065|ref|NP_470333.1| ATP-dependent protease [Listeria innocua Clip11262] gi|16413455|emb|CAC96227.1| ATP-dependent protease [Listeria innocua Clip11262] Length = 724 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 21/103 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 + + S L +IGQ DA + VA A+R R R L+ + P + L VGPTGVGKT Sbjct: 420 KNLESNLTGKVIGQDDAVKKVAKAIR-RSR-----VGLKAKNRPIGSFLFVGPTGVGKTE 473 Query: 69 ISRRLAR-LAGA--PFIKVEVTKFTE-----------IGYVGR 97 + R LAR L G I++++++F E GYVG Sbjct: 474 LGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGH 516 >gi|87122250|ref|ZP_01078133.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp. MED121] gi|86162570|gb|EAQ63852.1| endopeptidase Clp ATP-binding chain B (ClpB) [Marinomonas sp. MED121] Length = 859 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 +EL +IGQ++A AVA A+R R R + L D P + L +GPTGVGKT + + Sbjct: 565 NELHASVIGQEEAVTAVANAVR-RSR-----SGLADPNRPNGSFLFLGPTGVGKTELCKS 618 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGR 97 LA A ++V++++F E V R Sbjct: 619 LATFLFDTEASMVRVDMSEFMEKHSVAR 646 >gi|329894887|ref|ZP_08270686.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma proteobacterium IMCC3088] gi|328922616|gb|EGG29951.1| ATP-dependent Clp protease ATP-binding subunit ClpA [gamma proteobacterium IMCC3088] Length = 764 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 12/75 (16%) Query: 45 ADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------I 92 A L+ E P + LL GPTGVGKT ++R+LA + G I+ +++++ E Sbjct: 482 AGLKSEHKPIGSFLLAGPTGVGKTEVTRQLATMLGLELIRFDMSEYMERHTVSRLIGAPP 541 Query: 93 GYVGRNVEQIIRDLV 107 GYVG + ++ D V Sbjct: 542 GYVGFDQGGLLTDAV 556 >gi|288803735|ref|ZP_06409164.1| cell division protein FtsH [Prevotella melaninogenica D18] gi|288333824|gb|EFC72270.1| cell division protein FtsH [Prevotella melaninogenica D18] Length = 676 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 280 >gi|300022148|ref|YP_003754759.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hyphomicrobium denitrificans ATCC 51888] gi|299523969|gb|ADJ22438.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Hyphomicrobium denitrificans ATCC 51888] Length = 816 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTAISRRL 73 +L R + GQ A A++ A++ A LR+ P L GPTGVGKT ++++L Sbjct: 462 DLKRLVFGQDKAIEALSSAIKLAR------AGLREPEKPIGCYLFSGPTGVGKTEVAKQL 515 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 A L G ++ +++++ E GYVG + ++ D VD + V Sbjct: 516 ANLMGVELLRFDMSEYMEKHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 567 >gi|194735810|ref|YP_002116244.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301021|ref|ZP_02663053.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|200387470|ref|ZP_03214082.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194711312|gb|ACF90533.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289144|gb|EDY28513.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604568|gb|EDZ03113.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 647 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|190407968|gb|EDV11233.1| hypothetical protein SCRG_02514 [Saccharomyces cerevisiae RM11-1a] gi|256272000|gb|EEU07017.1| Yme1p [Saccharomyces cerevisiae JAY291] gi|323335127|gb|EGA76417.1| Yme1p [Saccharomyces cerevisiae Vin13] Length = 747 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365 >gi|163815425|ref|ZP_02206798.1| hypothetical protein COPEUT_01588 [Coprococcus eutactus ATCC 27759] gi|158449062|gb|EDP26057.1| hypothetical protein COPEUT_01588 [Coprococcus eutactus ATCC 27759] Length = 825 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 23/112 (20%) Query: 2 KLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILL 58 KLT S R ++ +EL + ++GQ++A AVA A++ R R L+D P L Sbjct: 492 KLTEKESKRLEKLETELHKRVVGQEEAVSAVAKAIK-RSR-----VGLKDPRRPIGTFLF 545 Query: 59 VGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTE-----------IGYVG 96 +GPTGVGKT +S+ LA + I+V+++++ E GYVG Sbjct: 546 LGPTGVGKTELSKALADVVFGSEDALIRVDMSEYMEKHSVSKLIGSPPGYVG 597 >gi|29831240|ref|NP_825874.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] gi|29608355|dbj|BAC72409.1| putative ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] Length = 841 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 589 >gi|145628239|ref|ZP_01784040.1| ClpB [Haemophilus influenzae 22.1-21] gi|145638337|ref|ZP_01793947.1| ClpB [Haemophilus influenzae PittII] gi|144980014|gb|EDJ89673.1| ClpB [Haemophilus influenzae 22.1-21] gi|145272666|gb|EDK12573.1| ClpB [Haemophilus influenzae PittII] gi|309751479|gb|ADO81463.1| ATP-dependent Clp protease ATPase subunit [Haemophilus influenzae R2866] Length = 856 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|332212224|ref|XP_003255219.1| PREDICTED: ATPase family AAA domain-containing protein 1 [Nomascus leucogenys] Length = 362 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|332288653|ref|YP_004419505.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179] gi|330431549|gb|AEC16608.1| ATP-dependent metalloprotease [Gallibacterium anatis UMN179] Length = 638 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 242 >gi|329122865|ref|ZP_08251437.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116] gi|327472129|gb|EGF17567.1| chaperone protein ClpB [Haemophilus aegyptius ATCC 11116] Length = 856 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|315635103|ref|ZP_07890381.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393] gi|315476065|gb|EFU66819.1| chaperone protein ClpB [Aggregatibacter segnis ATCC 33393] Length = 856 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|306836929|ref|ZP_07469881.1| cell division protein HflB [Corynebacterium accolens ATCC 49726] gi|304567184|gb|EFM42797.1| cell division protein HflB [Corynebacterium accolens ATCC 49726] Length = 249 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P+ +LL GP G GKT ++R +A AG PF + + F E+ +VG Sbjct: 199 IPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVG 242 >gi|289643372|ref|ZP_06475494.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata] gi|289506824|gb|EFD27801.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata] Length = 834 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL R +IGQQ A +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHRRVIGQQQAIKAVSQAIR-RTR-----AGLKDPKRPGGSFIFAGPSGVGKTELSKTL 563 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGRNV 99 A I+++++++ E V R V Sbjct: 564 AEFLFGDEDALIQLDMSEYMEKHTVSRLV 592 >gi|261327758|emb|CBH10735.1| ATP-dependent zinc metallopeptidase, putative [Trypanosoma brucei gambiense DAL972] Length = 877 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%) Query: 18 RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 ++I G ++AK+ V LR+ R L A + P LL+GP G GKT +++ +A Sbjct: 310 KHIAGLKEAKKEVTEVVDFLRHPERYTSLGAKV-----PTGALLLGPPGTGKTLLAKAVA 364 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +G FI V + F E+ YVG + +R L +VA Sbjct: 365 GESGVGFIPVCGSDFVEL-YVGMGALR-VRQLFEVA 398 >gi|254436354|ref|ZP_05049860.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] gi|207088044|gb|EDZ65317.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] Length = 638 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P+ +L+VGP G GKT ++R +A A PF + + F E+ Sbjct: 172 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 225 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 226 FVGVGASR-VRDMFENA 241 >gi|531752|emb|CAA56954.1| YTA11 [Saccharomyces cerevisiae] Length = 747 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365 >gi|50749260|ref|XP_421556.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 362 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|83718920|ref|YP_443288.1| cell division protein FtsH [Burkholderia thailandensis E264] gi|167582304|ref|ZP_02375178.1| cell division protein FtsH [Burkholderia thailandensis TXDOH] gi|167621274|ref|ZP_02389905.1| cell division protein FtsH [Burkholderia thailandensis Bt4] gi|257139524|ref|ZP_05587786.1| cell division protease FtsH [Burkholderia thailandensis E264] gi|83652745|gb|ABC36808.1| cell division protein FtsH [Burkholderia thailandensis E264] Length = 628 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|77163807|ref|YP_342332.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707] gi|254436287|ref|ZP_05049794.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] gi|123730722|sp|Q3JEE4|FTSH_NITOC RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|76882121|gb|ABA56802.1| Peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707] gi|207089398|gb|EDZ66670.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani AFC27] Length = 639 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVG G GKT ++R +A AG PF + + F E+ +VG + +RD+ A Sbjct: 213 IPKGILLVGRPGTGKTLLARAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 269 >gi|6325281|ref|NP_015349.1| Yme1p [Saccharomyces cerevisiae S288c] gi|418575|sp|P32795|YME1_YEAST RecName: Full=Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1; AltName: Full=Protein OSD1; AltName: Full=Tat-binding homolog 11; AltName: Full=Yeast mitochondrial escape protein 1 gi|295582|gb|AAA02883.1| putative ATPase [Saccharomyces cerevisiae] gi|809589|emb|CAA89278.1| Yme1p [Saccharomyces cerevisiae] gi|1314098|emb|CAA95020.1| Yme1p [Saccharomyces cerevisiae] gi|151942813|gb|EDN61159.1| mitochondrial escape protein [Saccharomyces cerevisiae YJM789] gi|285815558|tpg|DAA11450.1| TPA: Yme1p [Saccharomyces cerevisiae S288c] Length = 747 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LL GP G GKT ++R A AG F + ++F E+ YVG ++ IRDL Sbjct: 313 LPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEV-YVGVGAKR-IRDL 365 >gi|170717398|ref|YP_001784502.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336] gi|168825527|gb|ACA30898.1| ATP-dependent metalloprotease FtsH [Haemophilus somnus 2336] Length = 609 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAQVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|332685804|ref|YP_004455578.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311] gi|332369813|dbj|BAK20769.1| cell division protein FtsH [Melissococcus plutonius ATCC 35311] Length = 711 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 218 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA 274 >gi|328353874|emb|CCA40271.1| AFG3 family protein [Pichia pastoris CBS 7435] Length = 749 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + P+ +L GP G GKT +++ A AG PF+ V ++F E+ Sbjct: 293 LKNPKKYEKLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM- 346 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 347 FVGVGASR-VRDLFQQA 362 >gi|317507816|ref|ZP_07965517.1| ATPase [Segniliparus rugosus ATCC BAA-974] gi|316253858|gb|EFV13227.1| ATPase [Segniliparus rugosus ATCC BAA-974] Length = 842 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA AVA A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 515 ELHKRIIGQRDAVAAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568 Query: 74 A 74 A Sbjct: 569 A 569 >gi|300113260|ref|YP_003759835.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] gi|299539197|gb|ADJ27514.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] Length = 639 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P+ +L+VGP G GKT ++R +A A PF + + F E+ Sbjct: 173 LREPGRFQKLGGKI-----PRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM- 226 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 227 FVGVGASR-VRDMFENA 242 >gi|288560704|ref|YP_003424190.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium M1] gi|288543414|gb|ADC47298.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium M1] Length = 424 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 29/147 (19%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAIS 70 +++ LD II + K V + L++ +++ D PK ILL GP G GKT ++ Sbjct: 165 DMIGGLDEQII---EVKETVELPLKHPELFEKVGID-----PPKGILLYGPPGTGKTLLA 216 Query: 71 RRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS--I 128 + +A A FIKV ++F + Y+G +++R++ ++A +E+A I Sbjct: 217 KAVANETNATFIKVVASEFVK-KYIGEGA-RMVREVFELA------------KEKAPSII 262 Query: 129 NAEERILDALVG---KTATSNTREVFR 152 +E LDA+ K++TS REV R Sbjct: 263 FIDE--LDAVAAQRLKSSTSGDREVQR 287 >gi|302870292|ref|YP_003838929.1| ATPase AAA-2 domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503432|ref|YP_004082319.1| atpase aaa-2 domain protein [Micromonospora sp. L5] gi|302573151|gb|ADL49353.1| ATPase AAA-2 domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410051|gb|ADU08168.1| ATPase AAA-2 domain protein [Micromonospora sp. L5] Length = 845 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592 >gi|255085836|ref|XP_002505349.1| predicted protein [Micromonas sp. RCC299] gi|226520618|gb|ACO66607.1| predicted protein [Micromonas sp. RCC299] Length = 328 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT I R +A GA F + + T ++G E+++R L VA Sbjct: 55 VPRGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVA 111 >gi|85375462|ref|YP_459524.1| ATPase [Erythrobacter litoralis HTCC2594] gi|84788545|gb|ABC64727.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 792 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L + GQ A + ++ A++ A LRD P + L GPTGVGKT ++R+L Sbjct: 464 DLKHVVFGQDPAVKKLSTAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARQL 517 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 A + G + +++++ E GYVG + ++ D VD + V Sbjct: 518 ASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVDQNPHCV 569 >gi|327279352|ref|XP_003224420.1| PREDICTED: ATPase family AAA domain-containing protein 1-like [Anolis carolinensis] Length = 370 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 135 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 176 >gi|66358074|ref|XP_626215.1| katanin p60/fidgetin family with AAA ATpase [Cryptosporidium parvum Iowa II] gi|46227042|gb|EAK87992.1| katanin p60/fidgetin family with AAA ATpase [Cryptosporidium parvum Iowa II] Length = 537 Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTA 68 P+ +SE D +IG + K+ + + + N +R L L P+ ILL GP G GKT Sbjct: 250 PKNFISEKD--VIGLESIKKMLRVKIINPIQRPDLHVGLHS--APRGILLFGPPGTGKTM 305 Query: 69 ISRRLARLAGAPFIKV 84 +++ +A A F V Sbjct: 306 LAKWIASECKASFYDV 321 >gi|302345773|ref|YP_003814126.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC 25845] gi|302149199|gb|ADK95461.1| ATP-dependent metallopeptidase HflB [Prevotella melaninogenica ATCC 25845] Length = 676 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 224 IPKGALLVGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 280 >gi|255081660|ref|XP_002508052.1| predicted protein [Micromonas sp. RCC299] gi|226523328|gb|ACO69310.1| predicted protein [Micromonas sp. RCC299] Length = 509 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ++L GP G GKT ++R +A +GA F + ++F E+ +VG + +RDL A Sbjct: 43 VPKGVMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEM-FVGVGAAR-VRDLFSQA 99 >gi|303281951|ref|XP_003060267.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457738|gb|EEH55036.1| predicted protein [Micromonas pusilla CCMP1545] Length = 327 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT I R +A GA F + + T ++G E+++R L VA Sbjct: 55 VPRGLLLFGPPGTGKTLIGRAVASQCGATFFSISASSLTS-KWIGEG-EKMVRALFAVA 111 >gi|126272654|ref|XP_001363365.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 361 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|150018964|ref|YP_001311218.1| ATPase [Clostridium beijerinckii NCIMB 8052] gi|149905429|gb|ABR36262.1| ATPase AAA-2 domain protein [Clostridium beijerinckii NCIMB 8052] Length = 758 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Query: 47 LRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 L DE P ++L VGPTGVGKT I+R L++ G I+ +++++TE Sbjct: 493 LNDEDKPVASMLFVGPTGVGKTEIARCLSKTLGIDLIRFDMSEYTE 538 >gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum magnetotacticum MS-1] Length = 639 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 187 IPKGCLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 241 >gi|332086388|gb|EGI91535.1| cell division protease ftsH [Shigella dysenteriae 155-74] Length = 536 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 46 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 100 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 101 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 132 >gi|329120416|ref|ZP_08249082.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC BAA-1200] gi|327462100|gb|EGF08428.1| ATP-dependent metalloprotease FtsH [Neisseria bacilliformis ATCC BAA-1200] Length = 682 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 MP+ ILL G G GKT +++ +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 192 MPRGILLAGSPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 248 >gi|323191862|gb|EFZ77110.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] Length = 625 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 135 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 189 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 190 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 221 >gi|251793445|ref|YP_003008174.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700] gi|247534841|gb|ACS98087.1| ATP-dependent chaperone ClpB [Aggregatibacter aphrophilus NJ8700] Length = 856 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHKRVIGQNEAVDAVANAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELCKTL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A+ + +++++++F E V R V Sbjct: 619 AKFLFDSEDAMVRIDMSEFMEKHSVSRLV 647 >gi|238061431|ref|ZP_04606140.1| ATPase [Micromonospora sp. ATCC 39149] gi|237883242|gb|EEP72070.1| ATPase [Micromonospora sp. ATCC 39149] Length = 818 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 489 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 542 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 543 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 571 >gi|224824151|ref|ZP_03697259.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002] gi|224603570|gb|EEG09745.1| ATP-dependent metalloprotease FtsH [Lutiella nitroferrum 2002] Length = 652 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VG G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 216 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFSISGSEFVEM-FVGVGAAR-VRDLFEQA 272 >gi|215408565|emb|CAR31132.1| HflB protein [Candidatus Phytoplasma mali] gi|215408569|emb|CAR31134.1| HflB protein [Candidatus Phytoplasma mali] gi|215408575|emb|CAR31137.1| HflB protein [Candidatus Phytoplasma mali] Length = 162 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 56 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 114 Query: 112 N 112 N Sbjct: 115 N 115 >gi|187731936|ref|YP_001881907.1| ATP-dependent metalloprotease [Shigella boydii CDC 3083-94] gi|187428928|gb|ACD08202.1| ATP-dependent metallopeptidase HflB [Shigella boydii CDC 3083-94] Length = 647 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|121607214|ref|YP_995021.1| ATP-dependent metalloprotease FtsH [Verminephrobacter eiseniae EF01-2] gi|121551854|gb|ABM56003.1| membrane protease FtsH catalytic subunit [Verminephrobacter eiseniae EF01-2] Length = 655 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 209 IPRGLLLVGPPGTGKTLLAKSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFDNA 265 >gi|157158704|ref|YP_001464653.1| ATP-dependent metalloprotease [Escherichia coli E24377A] gi|157162661|ref|YP_001459979.1| ATP-dependent metalloprotease [Escherichia coli HS] gi|188491848|ref|ZP_02999118.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638] gi|191168060|ref|ZP_03029860.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A] gi|194430224|ref|ZP_03062722.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171] gi|237706070|ref|ZP_04536551.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA] gi|253771988|ref|YP_003034819.1| ATP-dependent metalloprotease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038343|ref|ZP_04872401.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43] gi|293406787|ref|ZP_06650713.1| hflB [Escherichia coli FVEC1412] gi|293412550|ref|ZP_06655273.1| hflB [Escherichia coli B354] gi|298382528|ref|ZP_06992125.1| hflB [Escherichia coli FVEC1302] gi|301025977|ref|ZP_07189460.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1] gi|307313117|ref|ZP_07592743.1| ATP-dependent metalloprotease FtsH [Escherichia coli W] gi|332279991|ref|ZP_08392404.1| ATP-dependent metalloprotease [Shigella sp. D9] gi|746401|gb|AAA97508.1| ATP-binding protein [Escherichia coli] gi|157068341|gb|ABV07596.1| ATP-dependent metallopeptidase HflB [Escherichia coli HS] gi|157080734|gb|ABV20442.1| ATP-dependent metallopeptidase HflB [Escherichia coli E24377A] gi|188487047|gb|EDU62150.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638] gi|190901929|gb|EDV61678.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A] gi|194411725|gb|EDX28049.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171] gi|226839967|gb|EEH71988.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43] gi|226899110|gb|EEH85369.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA] gi|253323032|gb|ACT27634.1| ATP-dependent metalloprotease FtsH [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260447795|gb|ACX38217.1| ATP-dependent metalloprotease FtsH [Escherichia coli DH1] gi|284923201|emb|CBG36295.1| cell division protein [Escherichia coli 042] gi|291426793|gb|EFE99825.1| hflB [Escherichia coli FVEC1412] gi|291469321|gb|EFF11812.1| hflB [Escherichia coli B354] gi|294491080|gb|ADE89836.1| ATP-dependent metallopeptidase HflB [Escherichia coli IHE3034] gi|298277668|gb|EFI19184.1| hflB [Escherichia coli FVEC1302] gi|299879903|gb|EFI88114.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1] gi|306907028|gb|EFN37536.1| ATP-dependent metalloprotease FtsH [Escherichia coli W] gi|313648580|gb|EFS13022.1| cell division protease ftsH [Shigella flexneri 2a str. 2457T] gi|315062484|gb|ADT76811.1| protease, ATP-dependent zinc-metallo [Escherichia coli W] gi|315137764|dbj|BAJ44923.1| hflB [Escherichia coli DH1] gi|323376928|gb|ADX49196.1| ATP-dependent metalloprotease FtsH [Escherichia coli KO11] gi|332102343|gb|EGJ05689.1| ATP-dependent metalloprotease [Shigella sp. D9] Length = 647 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|300113088|ref|YP_003759663.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] gi|299539025|gb|ADJ27342.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113] Length = 640 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILLVG G GKT ++R +A AG PF + + F E+ +VG + +RD+ A Sbjct: 214 IPKGILLVGRPGTGKTLLARAVAGEAGVPFYSISGSDFIEM-FVGVGAAR-VRDMFKAA 270 >gi|255713350|ref|XP_002552957.1| KLTH0D05412p [Lachancea thermotolerans] gi|238934337|emb|CAR22519.1| KLTH0D05412p [Lachancea thermotolerans] Length = 813 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L GP G GKT I++ A AG PF V ++F E+ +VG + +RDL A Sbjct: 375 IPRGAILSGPPGTGKTLIAKATAGEAGVPFFSVSGSEFVEM-FVGVGASR-VRDLFKTA 431 >gi|227328604|ref|ZP_03832628.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 646 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|227113767|ref|ZP_03827423.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 646 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK IL+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPSRFQKLGGKI-----PKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|326625046|gb|EGE31391.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 644 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|221106412|ref|XP_002168533.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 314 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT +++ A+ AG FI ++++ T+ Y Sbjct: 121 PKGVLLYGPPGCGKTMVAKATAKEAGCRFINLDISSLTDKWY 162 >gi|254472239|ref|ZP_05085639.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062] gi|211958522|gb|EEA93722.1| ATP-dependent chaperone ClpB [Pseudovibrio sp. JE062] Length = 859 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++GQQ+A AV+ A+R R R A L+D P + + +GPTGVGKT +++ L Sbjct: 566 ELAKRVVGQQEAVHAVSTAVR-RSR-----AGLQDPNRPIGSFMFLGPTGVGKTELTKAL 619 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A ++V++++F E V R Sbjct: 620 ASYLFDDETAMVRVDMSEFMEKHSVAR 646 >gi|198433804|ref|XP_002132122.1| PREDICTED: similar to YME1-like 1 [Ciona intestinalis] Length = 702 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK V LR+ + QL A L PK ILL+GP G GKT +++ +A Sbjct: 237 VCGMDEAKNELEDVVDYLRDPDKFTQLGAKL-----PKGILLIGPPGTGKTLLAKAVAGE 291 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQI 102 +G PF ++F E+ +VG +I Sbjct: 292 SGVPFFYTAGSEFDEM-FVGIGASRI 316 >gi|154426126|gb|AAI51347.1| ATAD1 protein [Bos taurus] Length = 369 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 134 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 175 >gi|16762058|ref|NP_457675.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766592|ref|NP_462207.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143547|ref|NP_806889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415225|ref|YP_152300.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161506141|ref|YP_001573253.1| ATP-dependent metalloprotease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616303|ref|YP_001590268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197364155|ref|YP_002143792.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205354197|ref|YP_002227998.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858544|ref|YP_002245195.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052988|ref|ZP_03345866.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425426|ref|ZP_03358176.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852786|ref|ZP_03382318.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585091|ref|YP_002638890.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910089|ref|ZP_04653926.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825807|ref|ZP_06544975.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037122|sp|P63344|FTSH_SALTI RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|54040797|sp|P63343|FTSH_SALTY RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|25308063|pir||AG0902 cell division protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421854|gb|AAL22166.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504361|emb|CAD07813.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139181|gb|AAO70749.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129482|gb|AAV78988.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160867488|gb|ABX24111.1| hypothetical protein SARI_04329 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365667|gb|ABX69435.1| hypothetical protein SPAB_04111 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197095632|emb|CAR61200.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205273978|emb|CAR38984.1| cell division protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710347|emb|CAR34705.1| cell division protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469619|gb|ACN47449.1| cell division protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248461|emb|CBG26298.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995493|gb|ACY90378.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159845|emb|CBW19364.1| cell division protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914320|dbj|BAJ38294.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087740|emb|CBY97504.1| cell division protein FtsH [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225979|gb|EFX51033.1| Cell division protein FtsH [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615299|gb|EFY12220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618342|gb|EFY15233.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622853|gb|EFY19697.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626825|gb|EFY23622.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631394|gb|EFY28154.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635339|gb|EFY32053.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643338|gb|EFY39902.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647090|gb|EFY43591.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648893|gb|EFY45338.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655085|gb|EFY51396.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657688|gb|EFY53956.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664184|gb|EFY60382.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667467|gb|EFY63629.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674715|gb|EFY70807.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675652|gb|EFY71725.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682288|gb|EFY78311.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684891|gb|EFY80889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131655|gb|ADX19085.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323199021|gb|EFZ84118.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204279|gb|EFZ89288.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207626|gb|EFZ92573.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211321|gb|EFZ96165.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214737|gb|EFZ99486.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221217|gb|EGA05643.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224042|gb|EGA08335.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230309|gb|EGA14428.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233285|gb|EGA17379.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239322|gb|EGA23372.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242427|gb|EGA26453.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246937|gb|EGA30903.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254130|gb|EGA37950.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255247|gb|EGA39024.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262710|gb|EGA46266.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264020|gb|EGA47528.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269406|gb|EGA52861.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326629318|gb|EGE35661.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990153|gb|AEF09136.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 644 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|326794632|ref|YP_004312452.1| ATP-dependent Clp protease ATP-binding subunit clpA [Marinomonas mediterranea MMB-1] gi|326545396|gb|ADZ90616.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Marinomonas mediterranea MMB-1] Length = 756 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 11/97 (11%) Query: 6 NFSPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVG 60 N R+++ L+R + GQ +A ++ A++ R L AD + P + L+ G Sbjct: 442 NSDDRKVLGNLERNLKMVVFGQDEAIETLSDAIK--LSRAGLKADQK----PIGSFLMAG 495 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 PTGVGKT ++R+LA+ G I+ +++++ E V R Sbjct: 496 PTGVGKTEVTRQLAKQMGLELIRFDMSEYMERHAVSR 532 >gi|325284113|ref|YP_004256654.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] gi|324315922|gb|ADY27037.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] Length = 625 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT +++ +A AG P+ V + F E+ +VG + +RDL + A Sbjct: 191 IPHGLLLVGPPGSGKTLLAKAVAGEAGVPYFAVSGSDFVEM-FVGVGAAR-VRDLFEQA 247 >gi|260596195|ref|YP_003208766.1| ATP-dependent metalloprotease [Cronobacter turicensis z3032] gi|260215372|emb|CBA27389.1| Cell division protease ftsH [Cronobacter turicensis z3032] Length = 647 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|251792626|ref|YP_003007352.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus NJ8700] gi|247534019|gb|ACS97265.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus NJ8700] Length = 649 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|193217037|ref|YP_002000279.1| cell division protein FtsH [Mycoplasma arthritidis 158L3-1] gi|310946748|sp|B3PNH3|FTSH_MYCA5 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|193002360|gb|ACF07575.1| cell division protein FtsH [Mycoplasma arthritidis 158L3-1] Length = 744 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILL GP G GKT I++ A A PF + + F E+ +VG ++ +RD+ + A Sbjct: 256 IPKGILLGGPPGTGKTLIAKATAGEANVPFFFISASNFVEM-FVGLGAKR-VRDMFEEA 312 >gi|170682536|ref|YP_001745450.1| ATP-dependent metalloprotease [Escherichia coli SMS-3-5] gi|170520254|gb|ACB18432.1| ATP-dependent metallopeptidase HflB [Escherichia coli SMS-3-5] Length = 647 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|159040200|ref|YP_001539453.1| ATPase [Salinispora arenicola CNS-205] gi|157919035|gb|ABW00463.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205] Length = 844 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592 >gi|62201535|gb|AAH92265.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 4 [Mus musculus] Length = 418 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMHADIGGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|39971519|ref|XP_367150.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] gi|59802930|gb|AAX07670.1| MSP1 protein-like protein [Magnaporthe grisea] gi|145019539|gb|EDK03767.1| conserved hypothetical protein [Magnaporthe oryzae 70-15] Length = 424 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +++R + +A Sbjct: 151 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 206 >gi|115358624|ref|YP_775762.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria AMMD] gi|115283912|gb|ABI89428.1| membrane protease FtsH catalytic subunit [Burkholderia ambifaria AMMD] Length = 655 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|189499094|ref|YP_001958564.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides BS1] gi|189494535|gb|ACE03083.1| ATP-dependent metalloprotease FtsH [Chlorobium phaeobacteroides BS1] Length = 686 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 220 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 272 >gi|67602049|ref|XP_666447.1| AAA family ATPase [Cryptosporidium hominis TU502] gi|54657443|gb|EAL36216.1| AAA family ATPase [Cryptosporidium hominis] Length = 536 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPT 62 L+ P+ +SE D +IG + K+ + + + N +R L L P+ ILL GP Sbjct: 243 LSIRTEPKNFISEKD--VIGLESIKKMLRVKIINPIQRPDLHVGLHS--APRGILLFGPP 298 Query: 63 GVGKTAISRRLARLAGAPFIKV 84 G GKT +++ +A A F V Sbjct: 299 GTGKTMLAKWIASECKASFYDV 320 >gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] Length = 720 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 + K +LLVGP G GKT ++R +A A PF ++F EI +VG + IR+L A Sbjct: 320 LQKGVLLVGPPGTGKTLLARAIAGEANVPFFHASGSEFDEI-FVGEGARR-IRNLFKSA 376 >gi|187934823|ref|YP_001887468.1| Cell division protease FtsH homolog [Clostridium botulinum B str. Eklund 17B] gi|187722976|gb|ACD24197.1| ATP-dependent metallopeptidase HflB [Clostridium botulinum B str. Eklund 17B] Length = 694 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%) Query: 20 IIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ++AK + V L R ++ A L PK LLVGP G GKT I++ +A Sbjct: 172 VAGQEEAKESLKEVIDFLNCPKRYTEIGAKL-----PKGALLVGPPGTGKTLIAKAVAGE 226 Query: 77 AGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDVAINIV 114 A PF + + F E +G V ++ ++ V A I+ Sbjct: 227 AKVPFFSLSGSSFVEMFVGVGASRVRELFKEAVAKAPCII 266 >gi|149921067|ref|ZP_01909526.1| cell division protein FtsH [Plesiocystis pacifica SIR-1] gi|149818071|gb|EDM77528.1| cell division protein FtsH [Plesiocystis pacifica SIR-1] Length = 651 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LL+GP G GKT ++R +A AG F + + F E+ +VG + +RDL + Sbjct: 195 IPKGVLLMGPPGTGKTLLARAIAGEAGVAFFSISGSDFVEM-FVGVGASR-VRDLFE 249 >gi|159037791|ref|YP_001537044.1| ATPase [Salinispora arenicola CNS-205] gi|157916626|gb|ABV98053.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205] Length = 836 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592 >gi|113868415|ref|YP_726904.1| FtsH endopeptidase [Ralstonia eutropha H16] gi|113527191|emb|CAJ93536.1| FtsH endopeptidase [Ralstonia eutropha H16] Length = 627 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|296284801|ref|ZP_06862799.1| ATPase [Citromicrobium bathyomarinum JL354] Length = 787 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 18/106 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L + + GQ A + ++ A++ A LRD P + L GPTGVGKT ++R+L Sbjct: 464 DLKQVVFGQDAAVKKLSTAMKLSR------AGLRDPDKPIGSFLFSGPTGVGKTEVARQL 517 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 A + G + +++++ E GYVG + ++ D VD Sbjct: 518 ASIMGIELKRFDMSEYMERHSVSRLIGAPPGYVGYDQGGLLTDAVD 563 >gi|260429034|ref|ZP_05783011.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella sp. SE45] gi|260419657|gb|EEX12910.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Citreicella sp. SE45] Length = 776 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 463 KDLEKSLKRVVFGQDPAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++++LA G ++ +++++ E V R Sbjct: 517 VAKQLASTLGVELLRFDMSEYMEKHAVSR 545 >gi|320010065|gb|ADW04915.1| ATPase AAA-2 domain protein [Streptomyces flavogriseus ATCC 33331] Length = 841 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|254474645|ref|ZP_05088031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp. R11] gi|214028888|gb|EEB69723.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria sp. R11] Length = 773 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L R + GQ A A++ A++ A LR+ P N L GPTGVGKT ++++LA Sbjct: 466 LKRVVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTEVAKQLA 519 Query: 75 RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 G ++ +++++ E GYVG + ++ D VD + V Sbjct: 520 DTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570 >gi|297192907|ref|ZP_06910305.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC 25486] gi|197722625|gb|EDY66533.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC 25486] Length = 841 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 589 >gi|195445293|ref|XP_002070262.1| GK11127 [Drosophila willistoni] gi|194166347|gb|EDW81248.1| GK11127 [Drosophila willistoni] Length = 389 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 + +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 143 VQKQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTAS 197 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI V ++F + Y+G +++RDL +A Sbjct: 198 FISVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225 >gi|191172189|ref|ZP_03033732.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11] gi|190907499|gb|EDV67095.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11] Length = 647 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|170766096|ref|ZP_02900907.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627] gi|170125242|gb|EDS94173.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627] Length = 647 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|149632154|ref|XP_001506311.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 361 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|172063361|ref|YP_001811012.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] gi|171995878|gb|ACB66796.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria MC40-6] Length = 655 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|145596784|ref|YP_001161081.1| ATPase [Salinispora tropica CNB-440] gi|145306121|gb|ABP56703.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440] Length = 844 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592 >gi|81429209|ref|YP_396210.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein FtsH) [Lactobacillus sakei subsp. sakei 23K] gi|78610852|emb|CAI55904.1| ATP-dependent zinc metalloendopeptidase FtsH (cell division protein FtsH) [Lactobacillus sakei subsp. sakei 23K] Length = 696 Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 222 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 278 >gi|330814390|ref|YP_004358629.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063] gi|327487485|gb|AEA81890.1| cell division protein FtsH [Candidatus Pelagibacter sp. IMCC9063] Length = 629 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LL+GP G GKT I+R +A A PF + + F E+ +VG + +RD+ + Sbjct: 186 IPKGALLIGPPGTGKTLIARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 240 >gi|323508048|emb|CBQ67919.1| probable MSP1-intra-mitochondrial sorting protein [Sporisorium reilianum] Length = 399 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 PK +LL GP G GKT +++ LA+ +GA FI + V+ T Sbjct: 121 PKGVLLYGPPGTGKTMLAKALAKESGATFINMHVSTLT 158 >gi|323452125|gb|EGB08000.1| hypothetical protein AURANDRAFT_26972 [Aureococcus anophagefferens] Length = 159 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 P+ ++L GP G GKT ++R +A AG PFI ++F E+ +VG +I Sbjct: 53 CPRGVILEGPPGTGKTLLARAVAGEAGVPFISTSGSEFVEM-FVGVGASRI 102 >gi|302670237|ref|YP_003830197.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Butyrivibrio proteoclasticus B316] gi|302394710|gb|ADL33615.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Butyrivibrio proteoclasticus B316] Length = 854 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 14/94 (14%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 S L + +IGQ+DA +AV+ A+R R R L+D P + L +GPTGVGKT +S+ Sbjct: 510 SVLHKRVIGQEDAVKAVSKAIR-RGR-----VGLQDPNRPIGSFLFLGPTGVGKTELSKA 563 Query: 73 LARLAGA---PFIKVEVTKFTEIGYVGRNVEQII 103 LA I+V+++++ E G +V ++I Sbjct: 564 LAEAMFGDENALIRVDMSEYME----GHSVSKMI 593 >gi|282866331|ref|ZP_06275376.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE] gi|282558727|gb|EFB64284.1| ATPase AAA-2 domain protein [Streptomyces sp. ACTE] Length = 842 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|215408557|emb|CAR31128.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|195499570|ref|XP_002097005.1| GE24735 [Drosophila yakuba] gi|194183106|gb|EDW96717.1| GE24735 [Drosophila yakuba] Length = 389 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A FI Sbjct: 145 KQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 199 Query: 83 KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +V ++F + Y+G +++RDL +A Sbjct: 200 RVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225 >gi|170701408|ref|ZP_02892367.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria IOP40-10] gi|170133687|gb|EDT02056.1| ATP-dependent metalloprotease FtsH [Burkholderia ambifaria IOP40-10] Length = 655 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|158333601|ref|YP_001514773.1| chaperone ClpB [Acaryochloris marina MBIC11017] gi|158303842|gb|ABW25459.1| chaperone ClpB [Acaryochloris marina MBIC11017] Length = 900 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L +IGQ+DA AV+ A+R R R A ++D P + + +GPTGVGKT ++R LA Sbjct: 579 LHERVIGQEDAVEAVSAAIR-RAR-----AGMKDPNRPIGSFMFLGPTGVGKTELARALA 632 Query: 75 RL---AGAPFIKVEVTKFTEIGYVGRNV 99 + I+++++++ E V R V Sbjct: 633 QFLFDTEDAIIRIDMSEYMEKHAVSRLV 660 >gi|28210271|ref|NP_781215.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88] gi|28202707|gb|AAO35152.1| ATP-dependent zinc metallopeptidase [Clostridium tetani E88] Length = 576 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 10/98 (10%) Query: 18 RYIIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 + I G ++AK +V L+N + + A MPK I+L G G GKT +++ +A Sbjct: 148 KNIAGNEEAKESVQDVIDFLKNPKKYESYGAR-----MPKGIILYGEPGTGKTLLAKAIA 202 Query: 75 RLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAIN 112 AG PF + + F ++ YVG + IR L A N Sbjct: 203 GEAGVPFYALSGSDFVQV-YVGVGASR-IRQLFKKARN 238 >gi|83310222|ref|YP_420486.1| ATPase with chaperone activity, ATP-binding subunit [Magnetospirillum magneticum AMB-1] gi|82945063|dbj|BAE49927.1| ATPase with chaperone activity, ATP-binding subunit [Magnetospirillum magneticum AMB-1] Length = 764 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68 R + +L + GQ A A+A A++ A LR+ P L GPTGVGKT Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LA++ G + +++++ E GYVG + ++ D +D Sbjct: 508 VARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558 >gi|50543570|ref|XP_499951.1| YALI0A10615p [Yarrowia lipolytica] gi|49645816|emb|CAG83880.1| YALI0A10615p [Yarrowia lipolytica] Length = 800 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + P+ +L GP G GKT I++ A AG PF+ V ++F E+ Sbjct: 345 LKNPQKFERLGAKI-----PRGAILSGPPGTGKTLIAKATAGEAGVPFLSVSGSEFVEM- 398 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 399 FVGVGASR-VRDLFSQA 414 >gi|1176560|sp|P46508|YME1_SCHMA RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog gi|453978|emb|CAA82844.1| ATPase (putative) [Schistosoma mansoni] Length = 662 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN + Q+ A L PK +LLVGP GVGKT +++ ++ A PF+ + F E+ Sbjct: 185 LRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEV- 238 Query: 94 YVGRNVEQIIRDLVDVA 110 VG + IR L A Sbjct: 239 LVGLGASR-IRQLFTTA 254 >gi|311896812|dbj|BAJ29220.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC [Kitasatospora setae KM-6054] Length = 838 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALIALDMSEFSEKHTVSR 591 >gi|302337451|ref|YP_003802657.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293] gi|301634636|gb|ADK80063.1| ATP-dependent chaperone ClpB [Spirochaeta smaragdinae DSM 11293] Length = 864 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 7/65 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 ++ S L++ ++GQ++A RAV+ A+R L DE P + + +GPTGVGKT + Sbjct: 564 QLESTLEKRVVGQKEAIRAVSDAIRRN------KTGLSDEARPLGSFIFIGPTGVGKTEL 617 Query: 70 SRRLA 74 +R LA Sbjct: 618 ARTLA 622 >gi|168039463|ref|XP_001772217.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676548|gb|EDQ63030.1| predicted protein [Physcomitrella patens subsp. patens] Length = 412 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 166 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 220 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RD+ +A Sbjct: 221 FIRVVGSEFVQ-KYLGEG-PRMVRDVFQLA 248 >gi|145545642|ref|XP_001458505.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426325|emb|CAK91108.1| unnamed protein product [Paramecium tetraurelia] Length = 864 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LL GP G GKT +++ A AG PF V + F E+ +VG + +RDL A Sbjct: 438 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 494 >gi|300980089|ref|ZP_07174839.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1] gi|300307863|gb|EFJ62383.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1] gi|324012133|gb|EGB81352.1| ATP-dependent metalloprotease [Escherichia coli MS 60-1] Length = 644 Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|328857483|gb|EGG06599.1| ATPase [Melampsora larici-populina 98AG31] Length = 819 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L GP G GKT +++ A AG PF+ V ++F E+ +VG + +RDL A Sbjct: 337 IPKGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM-FVGVGPSR-VRDLFATA 393 >gi|330470478|ref|YP_004408221.1| ATPase aaa-2 domain-containing protein [Verrucosispora maris AB-18-032] gi|328813449|gb|AEB47621.1| atpase aaa-2 domain protein [Verrucosispora maris AB-18-032] Length = 846 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 510 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 563 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 564 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 592 >gi|320174542|gb|EFW49678.1| Cell division protein FtsH [Shigella dysenteriae CDC 74-1112] Length = 644 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|297171206|gb|ADI22214.1| hypothetical protein [uncultured Gemmatimonadales bacterium HF0200_34B24] gi|297171322|gb|ADI22327.1| hypothetical protein [uncultured actinobacterium HF0500_01C15] Length = 826 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + I+GQ DA A++ A+R R R A L+D P + + GPTGVGKT ++R L Sbjct: 518 ELHKRIVGQNDAIEAISRAIR-RSR-----AGLKDPRRPIGSFIFSGPTGVGKTELARAL 571 Query: 74 ARLAGA---PFIKVEVTKFTEIGYVGR 97 A A ++V+++++ E V R Sbjct: 572 AEFLFADREALVRVDMSEYMEKFSVSR 598 >gi|315634355|ref|ZP_07889642.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC 33393] gi|315476945|gb|EFU67690.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC 33393] Length = 644 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 238 >gi|282859187|ref|ZP_06268309.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010] gi|282588006|gb|EFB93189.1| ATP-dependent metallopeptidase HflB [Prevotella bivia JCVIHMP010] Length = 707 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ+ AK+ V LRN + +L + P LL+GP G GKT +++ +A Sbjct: 198 VAGQEGAKQEVEEIVEFLRNPGKYTELGGKI-----PAGALLIGPPGTGKTLLAKAVAGE 252 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF + + F E+ +VG + +RD+ A Sbjct: 253 AGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 284 >gi|302535160|ref|ZP_07287502.1| ATP-dependent chaperone ClpB [Streptomyces sp. C] gi|302444055|gb|EFL15871.1| ATP-dependent chaperone ClpB [Streptomyces sp. C] Length = 841 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 548 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 549 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 591 >gi|196011868|ref|XP_002115797.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens] gi|190581573|gb|EDV21649.1| hypothetical protein TRIADDRAFT_30182 [Trichoplax adhaerens] Length = 773 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + QQL A + P+ +L GP G GKT +++ A AG PF+ + ++F E+ Sbjct: 316 LKNPNQYQQLGAKI-----PRGAILSGPPGTGKTLLAKATAGEAGVPFLSISGSEFLEM- 369 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 370 FVGVGPAR-VRDL 381 >gi|189010325|ref|ZP_03006283.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4076] gi|189401894|ref|ZP_03006511.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4401] gi|189403307|ref|ZP_03007035.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4486] gi|189404776|ref|ZP_03007576.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC869] gi|208814269|ref|ZP_03255598.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4045] gi|208820312|ref|ZP_03260632.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4042] gi|189001000|gb|EDU69986.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4076] gi|189358414|gb|EDU76833.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4401] gi|189361490|gb|EDU79909.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4486] gi|189374008|gb|EDU92424.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC869] gi|208735546|gb|EDZ84233.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4045] gi|208740435|gb|EDZ88117.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4042] Length = 647 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 157 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 211 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 212 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|110598266|ref|ZP_01386541.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM 13031] gi|110340074|gb|EAT58574.1| ATP-dependent metalloprotease FtsH [Chlorobium ferrooxidans DSM 13031] Length = 701 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 228 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 284 >gi|24375079|ref|NP_719122.1| clpB protein [Shewanella oneidensis MR-1] gi|54035853|sp|Q8EBE6|CLPB_SHEON RecName: Full=Chaperone protein ClpB gi|24349835|gb|AAN56566.1|AE015794_4 clpB protein [Shewanella oneidensis MR-1] Length = 857 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 10/88 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + LA Sbjct: 566 LHERVIGQNEAVDAVANAIR-RSR-----AGLADPNRPIGSFLFLGPTGVGKTELCKSLA 619 Query: 75 RL---AGAPFIKVEVTKFTEIGYVGRNV 99 R + + +++++++F E V R V Sbjct: 620 RFLFDSESALVRIDMSEFMEKHAVSRLV 647 >gi|299743241|ref|XP_001835627.2| ATPase [Coprinopsis cinerea okayama7#130] gi|298405567|gb|EAU86198.2| ATPase [Coprinopsis cinerea okayama7#130] Length = 360 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT +++ LA+ +GA FI + + T Y Sbjct: 118 PKGVLLFGPPGCGKTMMAKALAKESGATFINIAASVLTNKWY 159 >gi|296392867|ref|YP_003657751.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296180014|gb|ADG96920.1| ATPase AAA-2 domain protein [Segniliparus rotundus DSM 44985] Length = 842 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA AVA A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 515 ELHKRIIGQRDAVAAVAKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 568 Query: 74 A 74 A Sbjct: 569 A 569 >gi|290998117|ref|XP_002681627.1| predicted protein [Naegleria gruberi] gi|284095252|gb|EFC48883.1| predicted protein [Naegleria gruberi] Length = 277 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G AK++V A+ R L LR PK +LL GP G GKT I + +A +G+ Sbjct: 7 IAGLAYAKKSVQEAVIWPLMRPDLFTGLRKP--PKGLLLFGPPGTGKTLIGKAIAHESGS 64 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T +VG E++++ L +A Sbjct: 65 TFFSISASSLTS-KWVGEG-EKLVKTLFSLA 93 >gi|215432571|ref|ZP_03430490.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium tuberculosis EAS054] Length = 534 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 432 ELHKRIIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 485 Query: 74 A 74 A Sbjct: 486 A 486 >gi|194290075|ref|YP_002005982.1| cell division protein, ATP-dependent zinc-metallo protease; aaa atpase and peptidase m41 families [Cupriavidus taiwanensis LMG 19424] gi|193223910|emb|CAQ69919.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families [Cupriavidus taiwanensis LMG 19424] Length = 627 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|68160836|gb|AAY86864.1| lr1227 [Lactobacillus reuteri] Length = 551 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A +G PF + + F E+ +VG + +RDL D A Sbjct: 227 IPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEM-FVGVGASR-VRDLFDQA 283 >gi|15606774|ref|NP_214154.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5] gi|54035745|sp|O67588|CLPB_AQUAE RecName: Full=Chaperone protein ClpB gi|2984005|gb|AAC07550.1| ATPase subunit of ATP-dependent protease [Aquifex aeolicus VF5] Length = 1006 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 21/97 (21%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + ++ Q+ A +AVA A+R R R A L+D P + L +GPTGVGKT +S+ L Sbjct: 686 ELHKRVVDQEHAVKAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKAL 739 Query: 74 ARLAGA---PFIKVEVTKFTE-----------IGYVG 96 A L I++++++F E GYVG Sbjct: 740 AELLFGDEDALIRLDMSEFKEEHSVAKLIGAPPGYVG 776 >gi|320202092|gb|EFW76667.1| Cell division protein FtsH [Escherichia coli EC4100B] Length = 555 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 65 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 119 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 120 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 151 >gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399] gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399] Length = 651 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG F + + F E+ +VG + +RDL D A Sbjct: 179 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFDQA 235 >gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137 str. F0430] gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137 str. F0430] Length = 665 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT +++ +A AG F + + F E+ +VG + +RDL D A Sbjct: 193 IPKGVLLFGPPGTGKTLLAKAVAGEAGVQFFTISGSDFVEM-FVGVGASR-VRDLFDQA 249 >gi|313123085|ref|YP_004033344.1| m41 family endopeptidase ftsh [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279648|gb|ADQ60367.1| M41 family endopeptidase FtsH [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 657 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R +L A + P +LL GP G GKT +++ +A AG PF + + F E+ Sbjct: 161 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 214 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 215 FVGVGASR-VRDL 226 >gi|306430701|emb|CBJ17097.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430749|emb|CBJ17121.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430751|emb|CBJ17122.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430763|emb|CBJ17128.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430767|emb|CBJ17130.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430769|emb|CBJ17131.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430771|emb|CBJ17132.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|293390042|ref|ZP_06634376.1| ATP-dependent metallopeptidase HflB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950576|gb|EFE00695.1| ATP-dependent metallopeptidase HflB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 650 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEKA 241 >gi|194902777|ref|XP_001980760.1| GG17330 [Drosophila erecta] gi|190652463|gb|EDV49718.1| GG17330 [Drosophila erecta] Length = 389 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A FI Sbjct: 145 KQEIREAVELPLTHAQLYKQIGID-----PPRGVLLFGPPGCGKTMLAKAVAHHTTASFI 199 Query: 83 KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +V ++F + Y+G +++RDL +A Sbjct: 200 RVVGSEFVQ-KYLGEG-PRMVRDLFRLA 225 >gi|82778492|ref|YP_404841.1| ATP-dependent metalloprotease [Shigella dysenteriae Sd197] gi|309785506|ref|ZP_07680137.1| cell division protease ftsH [Shigella dysenteriae 1617] gi|81242640|gb|ABB63350.1| HflB [Shigella dysenteriae Sd197] gi|308926626|gb|EFP72102.1| cell division protease ftsH [Shigella dysenteriae 1617] Length = 644 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|82545584|ref|YP_409531.1| ATP-dependent metalloprotease [Shigella boydii Sb227] gi|81246995|gb|ABB67703.1| HflB [Shigella boydii Sb227] gi|320186665|gb|EFW61389.1| Cell division protein FtsH [Shigella flexneri CDC 796-83] gi|332090713|gb|EGI95807.1| cell division protease ftsH [Shigella boydii 3594-74] Length = 644 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|83999833|emb|CAH60133.1| putative Clp-family ATP-binding protease [Streptomyces tenjimariensis] Length = 841 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 590 >gi|84514770|ref|ZP_01002133.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53] gi|84510929|gb|EAQ07383.1| Chaperonin clpA/B [Loktanella vestfoldensis SKA53] Length = 772 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 458 KDLEKSLKRVVFGQDRAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 511 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 512 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 562 >gi|16131068|ref|NP_417645.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12 substr. MG1655] gi|24114467|ref|NP_708977.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 301] gi|30064516|ref|NP_838687.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 2457T] gi|74313715|ref|YP_312134.1| ATP-dependent metalloprotease [Shigella sonnei Ss046] gi|89109941|ref|AP_003721.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12 substr. W3110] gi|91212599|ref|YP_542585.1| ATP-dependent metalloprotease [Escherichia coli UTI89] gi|110643418|ref|YP_671148.1| ATP-dependent metalloprotease [Escherichia coli 536] gi|110807044|ref|YP_690564.1| ATP-dependent metalloprotease [Shigella flexneri 5 str. 8401] gi|117625472|ref|YP_858795.1| ATP-dependent metalloprotease [Escherichia coli APEC O1] gi|170018572|ref|YP_001723526.1| ATP-dependent metalloprotease [Escherichia coli ATCC 8739] gi|170082713|ref|YP_001732033.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli str. K-12 substr. DH10B] gi|209920653|ref|YP_002294737.1| ATP-dependent metalloprotease [Escherichia coli SE11] gi|215488494|ref|YP_002330925.1| ATP-dependent metalloprotease [Escherichia coli O127:H6 str. E2348/69] gi|218550461|ref|YP_002384252.1| ATP-dependent metalloprotease [Escherichia fergusonii ATCC 35469] gi|218555748|ref|YP_002388661.1| ATP-dependent metalloprotease [Escherichia coli IAI1] gi|218560248|ref|YP_002393161.1| ATP-dependent metalloprotease [Escherichia coli S88] gi|218691468|ref|YP_002399680.1| ATP-dependent metalloprotease [Escherichia coli ED1a] gi|218696883|ref|YP_002404550.1| ATP-dependent metalloprotease [Escherichia coli 55989] gi|218701947|ref|YP_002409576.1| ATP-dependent metalloprotease [Escherichia coli IAI39] gi|218706798|ref|YP_002414317.1| ATP-dependent metalloprotease [Escherichia coli UMN026] gi|227887899|ref|ZP_04005704.1| M41 family endopeptidase FtsH [Escherichia coli 83972] gi|238902280|ref|YP_002928076.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952] gi|254163120|ref|YP_003046228.1| ATP-dependent metalloprotease [Escherichia coli B str. REL606] gi|256018903|ref|ZP_05432768.1| ATP-dependent metalloprotease [Shigella sp. D9] gi|256024247|ref|ZP_05438112.1| ATP-dependent metalloprotease [Escherichia sp. 4_1_40B] gi|260845991|ref|YP_003223769.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str. 12009] gi|260857305|ref|YP_003231196.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str. 11368] gi|260869929|ref|YP_003236331.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str. 11128] gi|291284552|ref|YP_003501370.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615] gi|293416608|ref|ZP_06659247.1| hflB [Escherichia coli B185] gi|297520552|ref|ZP_06938938.1| ATP-dependent metalloprotease [Escherichia coli OP50] gi|300817569|ref|ZP_07097785.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1] gi|300823858|ref|ZP_07103982.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7] gi|300897943|ref|ZP_07116321.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1] gi|300904365|ref|ZP_07122217.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1] gi|300918936|ref|ZP_07135494.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1] gi|300926081|ref|ZP_07141900.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1] gi|300929870|ref|ZP_07145315.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1] gi|300938090|ref|ZP_07152867.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1] gi|300948829|ref|ZP_07162896.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1] gi|300955764|ref|ZP_07168108.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1] gi|300990825|ref|ZP_07179352.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1] gi|301022033|ref|ZP_07185976.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1] gi|301047978|ref|ZP_07195021.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1] gi|301301764|ref|ZP_07207898.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1] gi|301326397|ref|ZP_07219753.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1] gi|301644889|ref|ZP_07244860.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1] gi|306816480|ref|ZP_07450612.1| ATP-dependent metalloprotease [Escherichia coli NC101] gi|307139864|ref|ZP_07499220.1| ATP-dependent metalloprotease [Escherichia coli H736] gi|309793755|ref|ZP_07688181.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7] gi|312968485|ref|ZP_07782694.1| cell division protease ftsH [Escherichia coli 2362-75] gi|312972548|ref|ZP_07786722.1| cell division protease ftsH [Escherichia coli 1827-70] gi|331643876|ref|ZP_08345007.1| cell division protease FtsH [Escherichia coli H736] gi|331648978|ref|ZP_08350066.1| cell division protease FtsH [Escherichia coli M605] gi|331654782|ref|ZP_08355782.1| cell division protease FtsH [Escherichia coli M718] gi|331659465|ref|ZP_08360407.1| cell division protease FtsH [Escherichia coli TA206] gi|331664790|ref|ZP_08365695.1| cell division protease FtsH [Escherichia coli TA143] gi|331670005|ref|ZP_08370850.1| cell division protease FtsH [Escherichia coli TA271] gi|331679257|ref|ZP_08379929.1| cell division protease FtsH [Escherichia coli H591] gi|331684825|ref|ZP_08385417.1| cell division protease FtsH [Escherichia coli H299] gi|77416821|sp|P0AAI3|FTSH_ECOLI RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName: Full=Cell division protease FtsH gi|77416822|sp|P0AAI4|FTSH_SHIFL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|146028|gb|AAA23813.1| ftsH [Escherichia coli str. K-12 substr. W3110] gi|606116|gb|AAA57979.1| CG Site No. 735 [Escherichia coli str. K-12 substr. MG1655] gi|1789568|gb|AAC76210.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12 substr. MG1655] gi|24053649|gb|AAN44684.1| Zn metallo-peptidase, integral membrane cell division protein [Shigella flexneri 2a str. 301] gi|30042775|gb|AAP18498.1| Zn metallo-peptidase, integral membrane cell division protein [Shigella flexneri 2a str. 2457T] gi|73857192|gb|AAZ89899.1| degrades sigma32, integral membrane peptidase, cell division protein [Shigella sonnei Ss046] gi|85675972|dbj|BAE77222.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K12 substr. W3110] gi|91074173|gb|ABE09054.1| ATP-binding protein [Escherichia coli UTI89] gi|110345010|gb|ABG71247.1| cell division protein FtsH [Escherichia coli 536] gi|110616592|gb|ABF05259.1| ATP-dependent zinc-metallo protease [Shigella flexneri 5 str. 8401] gi|115514596|gb|ABJ02671.1| putative ATP-dependent zinc metalloprotease [Escherichia coli APEC O1] gi|169753500|gb|ACA76199.1| ATP-dependent metalloprotease FtsH [Escherichia coli ATCC 8739] gi|169890548|gb|ACB04255.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli str. K-12 substr. DH10B] gi|209758258|gb|ACI77441.1| cell division protein HflB/FtsH protease [Escherichia coli] gi|209758264|gb|ACI77444.1| cell division protein HflB/FtsH protease [Escherichia coli] gi|209913912|dbj|BAG78986.1| cell division protein [Escherichia coli SE11] gi|215266566|emb|CAS11005.1| protease, ATP-dependent zinc-metallo [Escherichia coli O127:H6 str. E2348/69] gi|218353615|emb|CAU99811.1| protease, ATP-dependent zinc-metallo [Escherichia coli 55989] gi|218358002|emb|CAQ90648.1| protease, ATP-dependent zinc-metallo [Escherichia fergusonii ATCC 35469] gi|218362516|emb|CAR00140.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI1] gi|218367017|emb|CAR04788.1| protease, ATP-dependent zinc-metallo [Escherichia coli S88] gi|218371933|emb|CAR19789.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI39] gi|218429032|emb|CAR09979.2| protease, ATP-dependent zinc-metallo [Escherichia coli ED1a] gi|218433895|emb|CAR14812.1| protease, ATP-dependent zinc-metallo [Escherichia coli UMN026] gi|222034895|emb|CAP77638.1| Cell division protease ftsH [Escherichia coli LF82] gi|227835295|gb|EEJ45761.1| M41 family endopeptidase FtsH [Escherichia coli 83972] gi|238863291|gb|ACR65289.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952] gi|242378721|emb|CAQ33511.1| ATP-dependent zinc metalloprotease FtsH, subunit of HflB, integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli BL21(DE3)] gi|253975021|gb|ACT40692.1| protease, ATP-dependent zinc-metallo [Escherichia coli B str. REL606] gi|253979177|gb|ACT44847.1| protease, ATP-dependent zinc-metallo [Escherichia coli BL21(DE3)] gi|257755954|dbj|BAI27456.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str. 11368] gi|257761138|dbj|BAI32635.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str. 12009] gi|257766285|dbj|BAI37780.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str. 11128] gi|281180220|dbj|BAI56550.1| cell division protein [Escherichia coli SE15] gi|281602561|gb|ADA75545.1| Cell division protease ftsH [Shigella flexneri 2002017] gi|290764425|gb|ADD58386.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615] gi|291431964|gb|EFF04947.1| hflB [Escherichia coli B185] gi|300300163|gb|EFJ56548.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1] gi|300317359|gb|EFJ67143.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1] gi|300358335|gb|EFJ74205.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1] gi|300397748|gb|EFJ81286.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1] gi|300403688|gb|EFJ87226.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1] gi|300407045|gb|EFJ90583.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1] gi|300413932|gb|EFJ97242.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1] gi|300417870|gb|EFK01181.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1] gi|300451685|gb|EFK15305.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1] gi|300456911|gb|EFK20404.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1] gi|300462203|gb|EFK25696.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1] gi|300523626|gb|EFK44695.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7] gi|300529867|gb|EFK50929.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1] gi|300842745|gb|EFK70505.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1] gi|300846908|gb|EFK74668.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1] gi|301076795|gb|EFK91601.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1] gi|305850045|gb|EFM50504.1| ATP-dependent metalloprotease [Escherichia coli NC101] gi|307555272|gb|ADN48047.1| cell division protease FtsH [Escherichia coli ABU 83972] gi|307625223|gb|ADN69527.1| ATP-dependent metalloprotease [Escherichia coli UM146] gi|308122712|gb|EFO59974.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7] gi|309703604|emb|CBJ02944.1| cell division protein [Escherichia coli ETEC H10407] gi|310334925|gb|EFQ01130.1| cell division protease ftsH [Escherichia coli 1827-70] gi|312286703|gb|EFR14614.1| cell division protease ftsH [Escherichia coli 2362-75] gi|312947735|gb|ADR28562.1| ATP-dependent metalloprotease [Escherichia coli O83:H1 str. NRG 857C] gi|315257103|gb|EFU37071.1| ATP-dependent metalloprotease [Escherichia coli MS 85-1] gi|315288958|gb|EFU48356.1| ATP-dependent metalloprotease [Escherichia coli MS 110-3] gi|315294885|gb|EFU54224.1| ATP-dependent metalloprotease [Escherichia coli MS 153-1] gi|315297892|gb|EFU57162.1| ATP-dependent metalloprotease [Escherichia coli MS 16-3] gi|315617261|gb|EFU97870.1| cell division protease ftsH [Escherichia coli 3431] gi|320194663|gb|EFW69293.1| Cell division protein FtsH [Escherichia coli WV_060327] gi|320640249|gb|EFX09821.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. G5101] gi|320645546|gb|EFX14555.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str. 493-89] gi|320650856|gb|EFX19313.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str. H 2687] gi|320656237|gb|EFX24149.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661927|gb|EFX29335.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. USDA 5905] gi|320666762|gb|EFX33741.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. LSU-61] gi|323154391|gb|EFZ40592.1| cell division protease ftsH [Escherichia coli EPECa14] gi|323162870|gb|EFZ48705.1| cell division protease ftsH [Escherichia coli E128010] gi|323165138|gb|EFZ50928.1| cell division protease ftsH [Shigella sonnei 53G] gi|323173562|gb|EFZ59191.1| cell division protease ftsH [Escherichia coli LT-68] gi|323178646|gb|EFZ64222.1| cell division protease ftsH [Escherichia coli 1180] gi|323183132|gb|EFZ68530.1| cell division protease ftsH [Escherichia coli 1357] gi|323189201|gb|EFZ74485.1| cell division protease ftsH [Escherichia coli RN587/1] gi|323936128|gb|EGB32422.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1520] gi|323941722|gb|EGB37901.1| ATP-dependent metallopeptidase HflB [Escherichia coli E482] gi|323946968|gb|EGB42984.1| ATP-dependent metallopeptidase HflB [Escherichia coli H120] gi|323951303|gb|EGB47178.1| ATP-dependent metallopeptidase HflB [Escherichia coli H252] gi|323957675|gb|EGB53389.1| ATP-dependent metallopeptidase HflB [Escherichia coli H263] gi|323961167|gb|EGB56781.1| ATP-dependent metallopeptidase HflB [Escherichia coli H489] gi|323966358|gb|EGB61792.1| ATP-dependent metallopeptidase HflB [Escherichia coli M863] gi|323970259|gb|EGB65530.1| ATP-dependent metallopeptidase HflB [Escherichia coli TA007] gi|323979105|gb|EGB74183.1| ATP-dependent metallopeptidase HflB [Escherichia coli TW10509] gi|324008749|gb|EGB77968.1| ATP-dependent metalloprotease [Escherichia coli MS 57-2] gi|324018297|gb|EGB87516.1| ATP-dependent metalloprotease [Escherichia coli MS 117-3] gi|324115218|gb|EGC09182.1| ATP-dependent metallopeptidase HflB [Escherichia fergusonii B253] gi|324119543|gb|EGC13425.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1167] gi|325498759|gb|EGC96618.1| ATP-dependent metalloprotease [Escherichia fergusonii ECD227] gi|327251269|gb|EGE62958.1| cell division protease ftsH [Escherichia coli STEC_7v] gi|330909232|gb|EGH37746.1| cell division protein FtsH [Escherichia coli AA86] gi|331037347|gb|EGI09571.1| cell division protease FtsH [Escherichia coli H736] gi|331042725|gb|EGI14867.1| cell division protease FtsH [Escherichia coli M605] gi|331048164|gb|EGI20241.1| cell division protease FtsH [Escherichia coli M718] gi|331054047|gb|EGI26076.1| cell division protease FtsH [Escherichia coli TA206] gi|331058038|gb|EGI30020.1| cell division protease FtsH [Escherichia coli TA143] gi|331062918|gb|EGI34832.1| cell division protease FtsH [Escherichia coli TA271] gi|331073322|gb|EGI44645.1| cell division protease FtsH [Escherichia coli H591] gi|331078440|gb|EGI49646.1| cell division protease FtsH [Escherichia coli H299] gi|332345134|gb|AEE58468.1| cell division protease FtsH [Escherichia coli UMNK88] gi|332752337|gb|EGJ82727.1| cell division protease ftsH [Shigella flexneri 4343-70] gi|332752863|gb|EGJ83248.1| cell division protease ftsH [Shigella flexneri K-671] gi|332754442|gb|EGJ84808.1| cell division protease ftsH [Shigella flexneri 2747-71] gi|332765174|gb|EGJ95401.1| ftsH HflB [Shigella flexneri 2930-71] gi|332998820|gb|EGK18416.1| cell division protease ftsH [Shigella flexneri VA-6] gi|332999256|gb|EGK18842.1| cell division protease ftsH [Shigella flexneri K-272] gi|333000055|gb|EGK19638.1| cell division protease ftsH [Shigella flexneri K-218] gi|333014604|gb|EGK33951.1| cell division protease ftsH [Shigella flexneri K-304] gi|333014979|gb|EGK34323.1| cell division protease ftsH [Shigella flexneri K-227] Length = 644 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|332535442|ref|ZP_08411227.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudoalteromonas haloplanktis ANT/505] gi|332035125|gb|EGI71638.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Pseudoalteromonas haloplanktis ANT/505] Length = 725 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVG 65 +E + LDR + GQ + A+ A+R R L ++ E + L GPTGVG Sbjct: 448 KETLKNLDRNLKMLVFGQDQSIDALTSAIR--LSRSGLSSE---EKPVGSFLFAGPTGVG 502 Query: 66 KTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 KT ++++LA+ G FI+ +++++ E + R Sbjct: 503 KTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534 >gi|307327020|ref|ZP_07606210.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113] gi|306887318|gb|EFN18314.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113] Length = 841 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589 >gi|184154697|ref|YP_001843037.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956] gi|227514337|ref|ZP_03944386.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931] gi|183226041|dbj|BAG26557.1| cell division protein FtsH [Lactobacillus fermentum IFO 3956] gi|227087309|gb|EEI22621.1| M41 family endopeptidase FtsH [Lactobacillus fermentum ATCC 14931] gi|299782819|gb|ADJ40817.1| M41 family endopeptidase FtsH [Lactobacillus fermentum CECT 5716] Length = 722 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 225 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 281 >gi|182437911|ref|YP_001825630.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466427|dbj|BAG20947.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp. griseus NBRC 13350] Length = 842 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|152986636|ref|YP_001350793.1| cell division protein FtsH [Pseudomonas aeruginosa PA7] gi|296391578|ref|ZP_06881053.1| cell division protein FtsH [Pseudomonas aeruginosa PAb1] gi|150961794|gb|ABR83819.1| cell division protein FtsH [Pseudomonas aeruginosa PA7] Length = 642 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 189 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 245 >gi|124514649|gb|EAY56161.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum rubarum] gi|206602544|gb|EDZ39025.1| Putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum sp. Group II '5-way CG'] Length = 813 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 10/82 (12%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 EL R I+GQ++A AVA A+R R R A ++ E P + + +GPTGVGKT ++R Sbjct: 504 GELHRRIVGQEEALSAVARAIR-RSR-----AGIKGEKRPIGSFIFLGPTGVGKTELART 557 Query: 73 LAR-LAG--APFIKVEVTKFTE 91 LA L G I+V+++++ E Sbjct: 558 LAETLFGDEDALIRVDMSEYME 579 >gi|73541858|ref|YP_296378.1| peptidase M41, FtsH [Ralstonia eutropha JMP134] gi|72119271|gb|AAZ61534.1| Peptidase M41, FtsH [Ralstonia eutropha JMP134] Length = 627 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|24581396|ref|NP_608763.2| CG3326 [Drosophila melanogaster] gi|75027335|sp|Q9VQN8|FIGL1_DROME RecName: Full=Fidgetin-like protein 1 gi|22945315|gb|AAF51127.2| CG3326 [Drosophila melanogaster] Length = 523 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 21/155 (13%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AK A+ RR L +R P+ +LL GP G GKT I++ +A A A Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139 F + + T +VG + E++++ L VA + A I +E +D+L+ Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVAA----------AHQPAIIFIDE--VDSLL 355 Query: 140 GKTATSNTREVFRKKLR-----DGEISDKEIDIEV 169 K + + R K DG S++EI + V Sbjct: 356 SKRSANENESTLRLKNEFLIHLDGAASNEEIRVLV 390 >gi|145218956|ref|YP_001129665.1| ATP-dependent metalloprotease FtsH [Prosthecochloris vibrioformis DSM 265] gi|145205120|gb|ABP36163.1| membrane protease FtsH catalytic subunit [Chlorobium phaeovibrioides DSM 265] Length = 701 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL A Sbjct: 232 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDLFKQA 288 >gi|94311126|ref|YP_584336.1| ATP-dependent metalloprotease FtsH [Cupriavidus metallidurans CH34] gi|122987908|sp|Q1LLA9|FTSH_RALME RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|93354978|gb|ABF09067.1| protease, ATP-dependent zinc-metallo [Cupriavidus metallidurans CH34] Length = 649 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 202 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 258 >gi|300124005|emb|CBK25276.2| unnamed protein product [Blastocystis hominis] Length = 388 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I++ LA A FIK + E YVG + +++R+L + A Sbjct: 163 PKGVLLYGPPGTGKTLIAKALASSIKATFIKTVASSLIE-KYVGES-SRVVRELFNYA 218 >gi|317152967|ref|YP_004121015.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis Aspo-2] gi|316943218|gb|ADU62269.1| ATP-dependent metalloprotease FtsH [Desulfovibrio aespoeensis Aspo-2] Length = 682 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVG G GKT ++R +A AG PF + + F E+ +VG + +RDL Sbjct: 188 IPKGVLLVGGPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDL 240 >gi|312196285|ref|YP_004016346.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] gi|311227621|gb|ADP80476.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] Length = 654 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 P+ +L+VGP G GKT ++R +A A PF+ V + F E+ +VG + +RDL Sbjct: 221 PRGVLMVGPPGTGKTLLARAVAGEAEVPFLSVTGSSFVEM-FVGVGASR-VRDL 272 >gi|260663745|ref|ZP_05864633.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN] gi|260551796|gb|EEX24912.1| cell division protein FtsH [Lactobacillus fermentum 28-3-CHN] Length = 698 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 201 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA 257 >gi|239942194|ref|ZP_04694131.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998] gi|239988660|ref|ZP_04709324.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL 11379] gi|291445649|ref|ZP_06585039.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998] gi|291348596|gb|EFE75500.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998] Length = 842 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|323340114|ref|ZP_08080379.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644] gi|323092491|gb|EFZ35098.1| cell division protein FtsH [Lactobacillus ruminis ATCC 25644] Length = 719 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 233 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 289 >gi|145495643|ref|XP_001433814.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124400934|emb|CAK66417.1| unnamed protein product [Paramecium tetraurelia] Length = 699 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LL GP G GKT +++ A AG PF V + F E+ +VG + +RDL A Sbjct: 372 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 428 >gi|22255857|gb|AAM94782.1| CalR4 [Micromonospora echinospora] Length = 797 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + +IGQ+DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 472 ELHKRVIGQEDAVKAVSKAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 525 Query: 74 AR-LAGA--PFIKVEVTKFTEIGYVGRNV 99 A L G+ I++++++F + V R V Sbjct: 526 AEFLFGSEDALIQLDMSEFHDRYTVSRLV 554 >gi|3834449|gb|AAC70950.1| ATP-dependent Clp protease ATP-binding subunit Clpc [Streptomyces coelicolor A3(2)] Length = 235 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 100 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIR-RTR-----AGLKDPKRPGGSFI 153 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 154 FAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSR 196 >gi|17546245|ref|NP_519647.1| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum GMI1000] gi|17428542|emb|CAD15228.1| probable atp-dependent zinc metallopeptidase (cell division ftsh) transmembrane protein [Ralstonia solanacearum GMI1000] Length = 628 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|83747762|ref|ZP_00944796.1| Cell division protein ftsH [Ralstonia solanacearum UW551] gi|207723996|ref|YP_002254394.1| atp-dependent zinc metallopeptidase (cell division protein ftsh) [Ralstonia solanacearum MolK2] gi|207742906|ref|YP_002259298.1| atp-dependent zinc metallopeptidase (cell division protein ftsh) [Ralstonia solanacearum IPO1609] gi|300703814|ref|YP_003745416.1| cell division protein, ATP-dependent zinc-metallo protease; aaa ATPase and peptidase m41 families [Ralstonia solanacearum CFBP2957] gi|83725534|gb|EAP72678.1| Cell division protein ftsH [Ralstonia solanacearum UW551] gi|206589204|emb|CAQ36166.1| atp-dependent zinc metallopeptidase (cell division protein ftsh) [Ralstonia solanacearum MolK2] gi|206594301|emb|CAQ61228.1| atp-dependent zinc metallopeptidase (cell division protein ftsh) [Ralstonia solanacearum IPO1609] gi|299071477|emb|CBJ42799.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families [Ralstonia solanacearum CFBP2957] Length = 628 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|71003982|ref|XP_756657.1| hypothetical protein UM00510.1 [Ustilago maydis 521] gi|46095729|gb|EAK80962.1| hypothetical protein UM00510.1 [Ustilago maydis 521] Length = 398 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 PK +LL GP G GKT +++ LA+ +GA FI + V+ T Sbjct: 121 PKGVLLYGPPGTGKTMLAKALAKESGATFINMHVSTLT 158 >gi|331006072|ref|ZP_08329408.1| ClpB protein [gamma proteobacterium IMCC1989] gi|330420109|gb|EGG94439.1| ClpB protein [gamma proteobacterium IMCC1989] Length = 887 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRR 72 +EL R +IGQ+ A AV+ A+R R R A L D P + L +GPTGVGKT + + Sbjct: 564 TELHRRVIGQEQAIVAVSNAVR-RSR-----AGLSDPNRPNGSFLFLGPTGVGKTELCKT 617 Query: 73 LAR-LAGAP--FIKVEVTKFTEIGYVGRNV 99 LA L +P +++++++F E V R V Sbjct: 618 LAEFLFDSPDAMVRLDMSEFMEKHAVARLV 647 >gi|320181453|gb|EFW56371.1| Cell division protein FtsH [Shigella boydii ATCC 9905] Length = 644 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|312383446|gb|EFR28534.1| hypothetical protein AND_03433 [Anopheles darlingi] Length = 604 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 9/81 (11%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G Q+AK+ V L++ R Q+L A + PK LL+GP G GKT +++ +A Sbjct: 134 VAGLQEAKQEVMEFVDYLKSPGRYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVATE 188 Query: 77 AGAPFIKVEVTKFTE-IGYVG 96 A PF+ + ++F E IG +G Sbjct: 189 AQVPFLSMNGSEFIEMIGGLG 209 >gi|297159363|gb|ADI09075.1| putative ATP-dependent Clp protease [Streptomyces bingchenggensis BCW-1] Length = 841 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589 >gi|293449512|ref|ZP_06663933.1| hflB [Escherichia coli B088] gi|291322602|gb|EFE62031.1| hflB [Escherichia coli B088] Length = 644 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|254485980|ref|ZP_05099185.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter sp. GAI101] gi|214042849|gb|EEB83487.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Roseobacter sp. GAI101] Length = 773 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ + L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 460 KDLEASLKRVVFGQDAAIDALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 513 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 514 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGMLTDGVD 564 >gi|206563423|ref|YP_002234186.1| putative cell division-related metallo peptidase [Burkholderia cenocepacia J2315] gi|198039463|emb|CAR55430.1| putative cell division-related metallo peptidase [Burkholderia cenocepacia J2315] Length = 658 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|241663316|ref|YP_002981676.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] gi|309782469|ref|ZP_07677193.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA] gi|240865343|gb|ACS63004.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] gi|308918806|gb|EFP64479.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA] Length = 628 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|149909597|ref|ZP_01898250.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp. PE36] gi|149807301|gb|EDM67254.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Moritella sp. PE36] Length = 757 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 22/114 (19%) Query: 10 REIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGV 64 R+++ L+R + GQ A + A+R R L A E P + L GPTGV Sbjct: 449 RDVLKNLERNLKMVVFGQDPAIEVLTDAIR--LSRSGLGA----ETKPIGSFLFAGPTGV 502 Query: 65 GKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 GKT +++RLA++ G I+ +++++ E GYVG + ++ D V Sbjct: 503 GKTEVTQRLAKIMGVELIRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAV 556 >gi|52841054|ref|YP_094853.1| ATP binding protease component ClpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628165|gb|AAU26906.1| ATP binding protease component ClpA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 757 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + +L + GQ A A+A A+ R+ R Q P L GPTGVGK Sbjct: 455 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 506 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R+LA + G ++ +++++ E V R Sbjct: 507 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 537 >gi|71891886|ref|YP_277616.1| hypothetical protein BPEN_101 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795992|gb|AAZ40743.1| HflB [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 642 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 170 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 223 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 224 FVGVGASR-VRDMFEQA 239 >gi|52219134|ref|NP_001004640.1| ATPase family AAA domain-containing protein 1-A isoform 1 [Danio rerio] gi|85701296|sp|Q7ZZ25|ATD1A_DANRE RecName: Full=ATPase family AAA domain-containing protein 1-A gi|51858828|gb|AAH81379.1| ATPase family, AAA domain containing 1a [Danio rerio] gi|182889226|gb|AAI64811.1| Atad1a protein [Danio rerio] Length = 380 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ +G FI ++ + T+ Y Sbjct: 129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWY 170 >gi|15599945|ref|NP_253439.1| cell division protein FtsH [Pseudomonas aeruginosa PAO1] gi|107103848|ref|ZP_01367766.1| hypothetical protein PaerPA_01004919 [Pseudomonas aeruginosa PACS2] gi|116052898|ref|YP_793215.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14] gi|218893846|ref|YP_002442715.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58] gi|254238513|ref|ZP_04931836.1| cell division protein FtsH [Pseudomonas aeruginosa C3719] gi|254244347|ref|ZP_04937669.1| cell division protein FtsH [Pseudomonas aeruginosa 2192] gi|313109732|ref|ZP_07795672.1| cell division protein FtsH [Pseudomonas aeruginosa 39016] gi|9951013|gb|AAG08137.1|AE004888_12 cell division protein FtsH [Pseudomonas aeruginosa PAO1] gi|115588119|gb|ABJ14134.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14] gi|126170444|gb|EAZ55955.1| cell division protein FtsH [Pseudomonas aeruginosa C3719] gi|126197725|gb|EAZ61788.1| cell division protein FtsH [Pseudomonas aeruginosa 2192] gi|218774074|emb|CAW29890.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58] gi|310882174|gb|EFQ40768.1| cell division protein FtsH [Pseudomonas aeruginosa 39016] Length = 639 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242 >gi|332086092|gb|EGI91254.1| cell division protease ftsH [Shigella boydii 5216-82] Length = 644 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|306430689|emb|CBJ17091.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430699|emb|CBJ17096.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +PK +LL GP G GKT +++ LA A PF ++F E+ YVG ++ + + + Sbjct: 60 IPKGVLLEGPPGTGKTLLAKALAGEANVPFFAASGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|299066493|emb|CBJ37683.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families [Ralstonia solanacearum CMR15] Length = 628 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|294013426|ref|YP_003546886.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium japonicum UT26S] gi|292676756|dbj|BAI98274.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Sphingobium japonicum UT26S] Length = 861 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 +EL + +IGQ +A +AV+ A+R R R A L+D P + L +GPTGVGKT +++ Sbjct: 565 AELGKRVIGQAEAVKAVSTAVR-RSR-----AGLQDPNRPLGSFLFLGPTGVGKTELTKA 618 Query: 73 LARLA---GAPFIKVEVTKFTEIGYVGR 97 LA + +++++++F E V R Sbjct: 619 LAGFLFDDDSAMVRIDMSEFMEKHSVAR 646 >gi|292627733|ref|XP_002666729.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1 [Danio rerio] Length = 721 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 319 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 368 >gi|262340850|ref|YP_003283705.1| chaperone ClpB [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272187|gb|ACY40095.1| chaperone ClpB [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 879 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 7/61 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL R +IGQ DA ++VA A+R R R A L+DE P + L +G TGVGKT +++ L Sbjct: 567 ELHRRVIGQNDAIQSVADAIR-RSR-----AGLQDEKRPIGSFLFMGSTGVGKTELAKTL 620 Query: 74 A 74 A Sbjct: 621 A 621 >gi|282599428|ref|YP_003358318.1| hypothetical protein PP-LUZ7_gp036 [Pseudomonas phage LUZ7] gi|259048527|emb|CAZ66177.1| hypothetical protein [Pseudomonas phage LUZ7] Length = 280 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%) Query: 246 IVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTKYG------SINTDHIL 297 +VF DEFDK++ + N S GVQ + L ++E S ++ YG +N +L Sbjct: 89 VVFADEFDKLLISGNSNSDLAHESTAGVQNEFLKMLE-SDITKVYGDYGKYQEVNVGKVL 147 Query: 298 FIASGAFHVS--------RPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQY 349 FI +GAF+ R + E GR P+ HL+ D +L S L+ Y Sbjct: 148 FIFAGAFNGVDMNNLDDLRSVGVKNEFLGRVPLHFHLEKPTLEDLLGLL--NRSALMEGY 205 Query: 350 KELMKT 355 EL + Sbjct: 206 LELFSS 211 >gi|224541457|ref|ZP_03681996.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM 15897] gi|224525615|gb|EEF94720.1| hypothetical protein CATMIT_00626 [Catenibacterium mitsuokai DSM 15897] Length = 652 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P+ +LLVGP G GKT ++R +A A PF + ++F E+ +VG Sbjct: 203 IPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISGSEFVEM-FVG 246 >gi|125528347|gb|EAY76461.1| hypothetical protein OsI_04395 [Oryza sativa Indica Group] Length = 802 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 339 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 392 Query: 94 YVG 96 +VG Sbjct: 393 FVG 395 >gi|221134248|ref|ZP_03560553.1| ATP-dependent metalloprotease FtsH [Glaciecola sp. HTCC2999] Length = 645 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 191 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 247 >gi|54293795|ref|YP_126210.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella pneumophila str. Lens] gi|53753627|emb|CAH15085.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella pneumophila str. Lens] Length = 755 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + +L + GQ A A+A A+ R+ R Q P L GPTGVGK Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R+LA + G ++ +++++ E V R Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535 >gi|226946313|ref|YP_002801386.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ] gi|226721240|gb|ACO80411.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ] Length = 637 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 186 IPRGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFDQA 242 >gi|327274727|ref|XP_003222128.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2 [Anolis carolinensis] Length = 723 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370 >gi|302338771|ref|YP_003803977.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM 11293] gi|301635956|gb|ADK81383.1| ATP-dependent metalloprotease FtsH [Spirochaeta smaragdinae DSM 11293] Length = 646 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ILLVGP G GKT ++R +A AG F ++ F E+ +VG + +RDL Sbjct: 228 IPKGILLVGPPGTGKTLLARAVAGEAGVVFFRMSGADFVEM-FVGVGAAR-VRDL 280 >gi|300123320|emb|CBK24593.2| unnamed protein product [Blastocystis hominis] Length = 347 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G AK+ V A+ +R L LR +P+ +LL GP G GKT + + +A G Sbjct: 70 IAGLAHAKQCVMEAVIWPMQRPDLFTGLR--AVPRGLLLFGPPGTGKTLLGKAIAHGGGC 127 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T ++G E+++R L VA Sbjct: 128 TFFSISASSLTS-KWMGEG-EKMVRALFGVA 156 >gi|317131986|ref|YP_004091300.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3] gi|315469965|gb|ADU26569.1| ATPase AAA-2 domain protein [Ethanoligenens harbinense YUAN-3] Length = 754 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 9/85 (10%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRL-A 74 L + IIGQ +A AV++A+R R R Q P P + + VGPTGVGKT + + L A Sbjct: 461 LKKKIIGQDEAVEAVSLAIR-RSRVQISP-----RRRPASFIFVGPTGVGKTELVKVLSA 514 Query: 75 RLAGAP--FIKVEVTKFTEIGYVGR 97 L P I++++++F E V R Sbjct: 515 ELFDQPDSLIRLDMSEFMEKHSVSR 539 >gi|148360535|ref|YP_001251742.1| ATP binding protease component ClpA [Legionella pneumophila str. Corby] gi|296106399|ref|YP_003618099.1| ATP binding protease component [Legionella pneumophila 2300/99 Alcoy] gi|148282308|gb|ABQ56396.1| ATP binding protease component ClpA [Legionella pneumophila str. Corby] gi|295648300|gb|ADG24147.1| ATP binding protease component [Legionella pneumophila 2300/99 Alcoy] gi|307609612|emb|CBW99114.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella pneumophila 130b] Length = 755 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + +L + GQ A A+A A+ R+ R Q P L GPTGVGK Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R+LA + G ++ +++++ E V R Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535 >gi|187929108|ref|YP_001899595.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J] gi|187725998|gb|ACD27163.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J] Length = 628 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|115464291|ref|NP_001055745.1| Os05g0458400 [Oryza sativa Japonica Group] gi|122169030|sp|Q0DHL4|FTSH8_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 8, mitochondrial; Short=OsFTSH8; Flags: Precursor gi|113579296|dbj|BAF17659.1| Os05g0458400 [Oryza sativa Japonica Group] Length = 822 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 354 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 407 Query: 94 YVG------RNVEQIIRDLVDVAINI 113 +VG RN+ Q R I I Sbjct: 408 FVGVGPSRVRNLFQEARQCAPSIIFI 433 >gi|121593879|ref|YP_985775.1| FtsH-2 peptidase [Acidovorax sp. JS42] gi|120605959|gb|ABM41699.1| membrane protease FtsH catalytic subunit [Acidovorax sp. JS42] Length = 635 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VG G GKT +++ +A AG PF+ + ++F E+ +VG + +RDL + A Sbjct: 206 IPKGVLIVGAPGTGKTLLAKAVAGEAGVPFLSLSGSEFVEM-FVGVGAAR-VRDLFEQA 262 >gi|52353449|gb|AAU44017.1| putative AAA-metalloprotease FtsH (fragment) [Oryza sativa Japonica Group] Length = 475 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 7 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 60 Query: 94 YVG------RNVEQIIRDLVDVAINI 113 +VG RN+ Q R I I Sbjct: 61 FVGVGPSRVRNLFQEARQCAPSIIFI 86 >gi|115440989|ref|NP_001044774.1| Os01g0842600 [Oryza sativa Japonica Group] gi|75330839|sp|Q8S2A7|FTSH3_ORYSJ RecName: Full=ATP-dependent zinc metalloprotease FTSH 3, mitochondrial; Short=OsFTSH3; Flags: Precursor gi|19571026|dbj|BAB86453.1| putative AAA-metalloprotease FtsH [Oryza sativa Japonica Group] gi|113534305|dbj|BAF06688.1| Os01g0842600 [Oryza sativa Japonica Group] gi|125572602|gb|EAZ14117.1| hypothetical protein OsJ_04041 [Oryza sativa Japonica Group] gi|215712383|dbj|BAG94510.1| unnamed protein product [Oryza sativa Japonica Group] Length = 802 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 339 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 392 Query: 94 YVG 96 +VG Sbjct: 393 FVG 395 >gi|289549041|ref|YP_003474029.1| ATPase AAA [Thermocrinis albus DSM 14484] gi|289182658|gb|ADC89902.1| ATPase AAA-2 domain protein [Thermocrinis albus DSM 14484] Length = 984 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 21/94 (22%) Query: 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARL 76 R +I Q+ A RAVA A+R R R A L+D P + L +GPTGVGKT +S+ LA L Sbjct: 687 RRVIDQEHAVRAVAEAIR-RAR-----AGLKDPKRPIASFLFLGPTGVGKTELSKALAEL 740 Query: 77 AGA---PFIKVEVTKFTE-----------IGYVG 96 I++++++F E GYVG Sbjct: 741 LFGDEDALIRLDMSEFKEEHSIAKLIGAPPGYVG 774 >gi|239980295|ref|ZP_04702819.1| ATP-dependent Clp protease [Streptomyces albus J1074] gi|291452160|ref|ZP_06591550.1| ATP-dependent Clp protease [Streptomyces albus J1074] gi|291355109|gb|EFE82011.1| ATP-dependent Clp protease [Streptomyces albus J1074] Length = 840 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSRAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLAR-LAG--APFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA L G I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKALAEFLFGDEEALISLDMSEFSEKHTVSR 590 >gi|15803718|ref|NP_289752.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 EDL933] gi|15833311|ref|NP_312084.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. Sakai] gi|195938397|ref|ZP_03083779.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. EC4024] gi|209399479|ref|YP_002272648.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4115] gi|217327622|ref|ZP_03443705.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. TW14588] gi|254795127|ref|YP_003079964.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. TW14359] gi|261228189|ref|ZP_05942470.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261255045|ref|ZP_05947578.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli O157:H7 str. FRIK966] gi|20138203|sp|Q8X9L0|FTSH_ECO57 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|12517790|gb|AAG58312.1|AE005546_6 degrades sigma32, integral membrane peptidase, cell division protein [Escherichia coli O157:H7 str. EDL933] gi|13363530|dbj|BAB37480.1| cell division protein HflB/FtsH protease [Escherichia coli O157:H7 str. Sakai] gi|209160879|gb|ACI38312.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. EC4115] gi|209758260|gb|ACI77442.1| cell division protein HflB/FtsH protease [Escherichia coli] gi|209758262|gb|ACI77443.1| cell division protein HflB/FtsH protease [Escherichia coli] gi|209758266|gb|ACI77445.1| cell division protein HflB/FtsH protease [Escherichia coli] gi|217319989|gb|EEC28414.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str. TW14588] gi|254594527|gb|ACT73888.1| subunit of integral membrane ATP-dependent zinc metallopeptidase [Escherichia coli O157:H7 str. TW14359] gi|320189531|gb|EFW64190.1| Cell division protein FtsH [Escherichia coli O157:H7 str. EC1212] gi|326337878|gb|EGD61712.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1125] gi|326347448|gb|EGD71173.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1044] Length = 644 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|114320603|ref|YP_742286.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Alkalilimnicola ehrlichii MLHE-1] gi|114226997|gb|ABI56796.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Alkalilimnicola ehrlichii MLHE-1] Length = 756 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 28/43 (65%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 + L GPTGVGKT +SRRLA L G I+ +++++ E V R Sbjct: 494 SFLFSGPTGVGKTEVSRRLAELMGVKLIRFDMSEYMERHTVSR 536 >gi|120556262|ref|YP_960613.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8] gi|120326111|gb|ABM20426.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei VT8] Length = 647 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|300691219|ref|YP_003752214.1| cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families [Ralstonia solanacearum PSI07] gi|299078279|emb|CBJ50927.1| Cell division protein, ATP-dependent zinc-metallo protease; AAA ATPase and peptidase M41 families [Ralstonia solanacearum PSI07] Length = 628 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFENA 242 >gi|225573316|ref|ZP_03782071.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM 10507] gi|225039328|gb|EEG49574.1| hypothetical protein RUMHYD_01507 [Blautia hydrogenotrophica DSM 10507] Length = 686 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + GQ +AK + V L N + + A L PK LLVGP G GKT +++ +A Sbjct: 184 VAGQDEAKESLQEVVDFLHNPGKYTGIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 238 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RDL + A Sbjct: 239 AHVPFYSLSGSDFVEM-FVGVGASR-VRDLFEEA 270 >gi|194855425|ref|XP_001968542.1| GG24448 [Drosophila erecta] gi|190660409|gb|EDV57601.1| GG24448 [Drosophila erecta] Length = 527 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AK A+ RR L +R P+ +LL GP G GKT I++ +A A A Sbjct: 256 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 313 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T +VG + E++++ L VA Sbjct: 314 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 342 >gi|145507119|ref|XP_001439517.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406707|emb|CAK72120.1| unnamed protein product [Paramecium tetraurelia] Length = 799 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LL GP G GKT +++ A AG PF V + F E+ +VG + +RDL A Sbjct: 373 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 429 >gi|194332970|ref|YP_002014830.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] gi|194310788|gb|ACF45183.1| ATP-dependent metalloprotease FtsH [Prosthecochloris aestuarii DSM 271] Length = 699 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 229 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 281 >gi|23016165|ref|ZP_00055924.1| COG0542: ATPases with chaperone activity, ATP-binding subunit [Magnetospirillum magnetotacticum MS-1] Length = 765 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI-LLVGPTGVGKTA 68 R + +L + GQ A A+A A++ A LR+ P L GPTGVGKT Sbjct: 454 RNLERDLKTLVFGQDKAIEALASAIK------LARAGLREPEKPIGCYLFSGPTGVGKTE 507 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++R+LA++ G + +++++ E GYVG + ++ D +D Sbjct: 508 VARQLAKIMGIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAID 558 >gi|296282903|ref|ZP_06860901.1| ATP-dependent Zn protease [Citromicrobium bathyomarinum JL354] Length = 659 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVG G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 208 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 264 >gi|239982566|ref|ZP_04705090.1| cell division protein FtsH-like protein [Streptomyces albus J1074] Length = 646 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 237 MPRGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 296 Query: 110 AINIV 114 A +I+ Sbjct: 297 APSII 301 >gi|218196923|gb|EEC79350.1| hypothetical protein OsI_20217 [Oryza sativa Indica Group] Length = 829 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK LLVGP G GKT +++ A +G PF+ + + F E+ Sbjct: 361 LKNPKKYEELGAKI-----PKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEM- 414 Query: 94 YVG------RNVEQIIRDLVDVAINI 113 +VG RN+ Q R I I Sbjct: 415 FVGVGPSRVRNLFQEARQCAPSIIFI 440 >gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H] gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H] Length = 702 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK ILL G G GKT I+R +A A PFI+ ++F E+ +VG + IR+L A Sbjct: 282 LPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEM-FVGVGARR-IRELFQAA 338 >gi|114704885|ref|ZP_01437793.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506] gi|114539670|gb|EAU42790.1| endopeptidase Clp ATP-binding chain A [Fulvimarina pelagi HTCC2506] Length = 832 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 ++L R + GQ A A+A A++ A LR+ P + L GPTGVGKT ++++ Sbjct: 464 TQLKRVVYGQDQAIEALASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVAKQ 517 Query: 73 LARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 518 LASTLGVEILRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 570 >gi|85858020|ref|YP_460222.1| ATPase Clp protease ATP binding subunit [Syntrophus aciditrophicus SB] gi|85721111|gb|ABC76054.1| ATPase clp protease ATP binding subunit [Syntrophus aciditrophicus SB] Length = 768 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ +EL I GQ A + +++ R R A R+ P + LLVGPTGVGKT Sbjct: 457 RDLETELKSTIFGQDQAIEQLVESIK-RSR-----AGFREPDKPIGSFLLVGPTGVGKTE 510 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++R+LA G P + +++++ E V + Sbjct: 511 LARQLALSLGIPLHRYDMSEYQEKHTVAK 539 >gi|254248360|ref|ZP_04941680.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184] gi|124874861|gb|EAY64851.1| ATP-dependent Zn protease [Burkholderia cenocepacia PC184] Length = 659 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|326679769|ref|XP_003201374.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 2 [Danio rerio] Length = 704 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 302 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 351 >gi|300812101|ref|ZP_07092549.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496940|gb|EFK32014.1| ATP-dependent metallopeptidase HflB [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 737 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R +L A + P +LL GP G GKT +++ +A AG PF + + F E+ Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 261 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 262 FVGVGASR-VRDL 273 >gi|291454408|ref|ZP_06593798.1| cell division protein [Streptomyces albus J1074] gi|291357357|gb|EFE84259.1| cell division protein [Streptomyces albus J1074] Length = 664 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQIIRDLVDV 109 MP+ +LL GP G GKT ++R +A A PF ++F E +G V ++ + V Sbjct: 255 MPRGVLLTGPPGTGKTLLARAVAGEADVPFFSASASEFIEMIVGVGAGRVRELFAEARKV 314 Query: 110 AINIV 114 A +I+ Sbjct: 315 APSII 319 >gi|288941086|ref|YP_003443326.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180] gi|288896458|gb|ADC62294.1| ATP-dependent chaperone ClpB [Allochromatium vinosum DSM 180] Length = 865 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 SE+++ ++GQ +A RAV+ A+R R R A L D P + L +GPTGVGKT + + Sbjct: 564 SEIEQRVVGQNEAVRAVSDAIR-RSR-----AGLSDPGRPIGSFLFLGPTGVGKTELCKA 617 Query: 73 LARL---AGAPFIKVEVTKFTEIGYVGR 97 LA +++++++F E V R Sbjct: 618 LAAFLFDTEEAMVRIDMSEFMEKHSVAR 645 >gi|215408563|emb|CAR31131.1| HflB protein [Candidatus Phytoplasma mali] Length = 166 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|215408547|emb|CAR31123.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|171690880|ref|XP_001910365.1| hypothetical protein [Podospora anserina S mat+] gi|170945388|emb|CAP71500.1| unnamed protein product [Podospora anserina S mat+] Length = 409 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P +LL GP G GKT +++ +A +GA FI + ++ TE Y N +++R + +A Sbjct: 150 PSGVLLYGPPGCGKTMLAKAVAHESGASFINLHISTLTEKWYGDSN--KLVRAVFSLA 205 >gi|150866631|ref|XP_001386295.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054] gi|149387887|gb|ABN68266.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054] Length = 788 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 31/157 (19%) Query: 42 QLPADLRDEL------MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--G 93 QLP + D PK +LL GP G KT ++ LA +G F+ V K EI Sbjct: 539 QLPLEAADSFKALGVSAPKGVLLYGPPGCSKTLTAKALATESGLNFLAV---KGPEIFNK 595 Query: 94 YVG---RNVEQIIRDLVDVAINIVRESRRDEV---REQASINAEERILDALVGK------ 141 YVG R + +I R A +I+ D + RE AS +A + +L +L+ + Sbjct: 596 YVGESERAIREIFRKARAAAPSIIFFDEIDAISGDRESASTSASQHVLTSLLNEIDGVEE 655 Query: 142 -------TATSNTREVFRKKLRDGEISDKEIDIEVAD 171 AT+ E+ LR G + D+ I + D Sbjct: 656 LKGVVIVAATNKPTEIDPALLRPGRL-DRHIYVAPPD 691 >gi|158522492|ref|YP_001530362.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus oleovorans Hxd3] gi|158511318|gb|ABW68285.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Desulfococcus oleovorans Hxd3] Length = 751 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + + GQ +A + A++ R R A L P + L GPTGVGKT I+R++ Sbjct: 453 ELKQVVFGQDEAIAFLTTAIK-RSR-----AGLGKPEKPIGSFLFTGPTGVGKTEIARQM 506 Query: 74 ARLAGAPFIKVEVTKFTEIGYVGR 97 A + G FI+ +++++ E V R Sbjct: 507 AAILGVAFIRFDMSEYMEKHAVAR 530 >gi|115642732|ref|XP_001184600.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus purpuratus] gi|115661295|ref|XP_001196555.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus purpuratus] Length = 221 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 89 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 144 >gi|320450651|ref|YP_004202747.1| ATPase [Thermus scotoductus SA-01] gi|320150820|gb|ADW22198.1| ATPase AAA-2 [Thermus scotoductus SA-01] Length = 453 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 49/181 (27%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 L R +IGQ A AV L+ + A L + P +++L GPTG GKT +++ LA Sbjct: 165 LKRRVIGQDHAVEAVVRGLKRK------AAGLSRKEKPFSVMLAGPTGTGKTELAKALAD 218 Query: 76 LAGAPFIKVEVTKF-----------TEIGYV-----GRNVEQIIRD-------------- 105 G P I+ ++ ++ + GYV GR E + R Sbjct: 219 ALGRPLIRYDMNQYGQDHTVAALVGSPPGYVGSDRPGRLYEDLARHPKGVFLFDEMEKAH 278 Query: 106 --LVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSN--TREVFRKKLRDGEIS 161 ++D + ++ E R E+ + +A E IL T+N RE F + GE+ Sbjct: 279 PAVLDPLLQLLDEGRFQELSKGLVASAPECIL------LFTTNLLAREAFEGR---GEMP 329 Query: 162 D 162 D Sbjct: 330 D 330 >gi|294085870|ref|YP_003552630.1| cell division protein ftsH [Candidatus Puniceispirillum marinum IMCC1322] gi|292665445|gb|ADE40546.1| cell division protein ftsH [Candidatus Puniceispirillum marinum IMCC1322] Length = 636 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + Sbjct: 185 IPKGVLLVGPPGTGKTLLAKAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 239 >gi|224044755|ref|XP_002188216.1| PREDICTED: YME1-like 1 isoform 2 [Taeniopygia guttata] Length = 723 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370 >gi|209694184|ref|YP_002262112.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238] gi|208008135|emb|CAQ78277.1| cell division protein FtsH [Aliivibrio salmonicida LFI1238] Length = 660 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P +LLVGP G GKT I++ +A A PF + + F E+ Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 226 FVGVGASR-VRDMFEQA 241 >gi|158288670|ref|XP_310523.4| AGAP000560-PA [Anopheles gambiae str. PEST] gi|157018680|gb|EAA06300.4| AGAP000560-PA [Anopheles gambiae str. PEST] Length = 727 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Query: 18 RYIIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 R + G Q+AK+ V L++ R Q+L A + PK LL+GP G GKT +++ +A Sbjct: 253 RDVAGLQEAKQEVMEFVDYLKSPGRYQRLGAKV-----PKGALLLGPPGCGKTLLAKAVA 307 Query: 75 RLAGAPFIKVEVTKFTE-IGYVG 96 A PF+ + ++F E IG +G Sbjct: 308 TEAQVPFLSMNGSEFIEMIGGLG 330 >gi|152002560|dbj|BAF73584.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-W] Length = 422 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL GP G GKT + + LA PF V ++F E+ YVG + IRDL A Sbjct: 212 IPKGVLLEGPPGTGKTLLVKALANEVKIPFYAVSGSEFVEV-YVGVGASR-IRDLFQKA 268 >gi|107026275|ref|YP_623786.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia AU 1054] gi|116692537|ref|YP_838070.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia HI2424] gi|105895649|gb|ABF78813.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia AU 1054] gi|116650537|gb|ABK11177.1| membrane protease FtsH catalytic subunit [Burkholderia cenocepacia HI2424] Length = 658 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|54296839|ref|YP_123208.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella pneumophila str. Paris] gi|53750624|emb|CAH12031.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Legionella pneumophila str. Paris] Length = 755 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 10 REIVSELDRYIIGQQDAKRAVAIAL---RNRWRRQQLPADLRDELMPKNILLVGPTGVGK 66 R + +L + GQ A A+A A+ R+ R Q P L GPTGVGK Sbjct: 453 RNLERDLKLLVYGQDQAITALASAIKLGRSGLREPQKPVGC--------FLFAGPTGVGK 504 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 T ++R+LA + G ++ +++++ E V R Sbjct: 505 TEVTRQLANVLGIELLRFDMSEYMEKHTVSR 535 >gi|326921621|ref|XP_003207055.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like [Meleagris gallopavo] Length = 722 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 320 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 369 >gi|306430697|emb|CBJ17095.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430703|emb|CBJ17098.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430705|emb|CBJ17099.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430707|emb|CBJ17100.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430709|emb|CBJ17101.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430719|emb|CBJ17106.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|306430657|emb|CBJ17075.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430659|emb|CBJ17076.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430665|emb|CBJ17079.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430667|emb|CBJ17080.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430669|emb|CBJ17081.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430747|emb|CBJ17120.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430755|emb|CBJ17124.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|256081179|ref|XP_002576850.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni] gi|238662136|emb|CAZ33087.1| family M41 unassigned peptidase (M41 family) [Schistosoma mansoni] Length = 602 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 LRN + Q+ A L PK +LLVGP GVGKT +++ ++ A PF+ + F E+ Sbjct: 185 LRNPEKFNQIGAKL-----PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEV 238 >gi|215408543|emb|CAR31121.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|149202407|ref|ZP_01879380.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius sp. TM1035] gi|149144505|gb|EDM32536.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseovarius sp. TM1035] Length = 763 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 449 KDLEGTLKRVVFGQDAAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 502 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 ++++LA G ++ +++++ E GYVG + ++ D VD Sbjct: 503 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVD 553 >gi|71895721|ref|NP_001026683.1| ATP-dependent metalloprotease YME1L1 [Gallus gallus] gi|53135987|emb|CAG32475.1| hypothetical protein RCJMB04_26f23 [Gallus gallus] Length = 722 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 320 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 369 >gi|55741940|ref|NP_001007113.1| ATPase family AAA domain-containing protein 1-A isoform 2 [Danio rerio] gi|27802754|emb|CAD60864.1| novel protein with ATPase domain [Danio rerio] Length = 372 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ +G FI ++ + T+ Y Sbjct: 129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWY 170 >gi|319936956|ref|ZP_08011366.1| cell division protein ftsH [Coprobacillus sp. 29_1] gi|319807892|gb|EFW04471.1| cell division protein ftsH [Coprobacillus sp. 29_1] Length = 655 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +P+ +LLVGP G GKT ++R +A A PF + ++F E+ +VG Sbjct: 203 IPRGVLLVGPPGTGKTLLARAVAGEANVPFYSISGSEFVEM-FVG 246 >gi|302841647|ref|XP_002952368.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f. nagariensis] gi|300262304|gb|EFJ46511.1| hypothetical protein VOLCADRAFT_105496 [Volvox carteri f. nagariensis] Length = 1104 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 +PK +LL GP G GKT +++ +A AG PF ++F E+ YVG Sbjct: 481 LPKGVLLTGPPGTGKTLLAKAVAGEAGVPFFYRAGSEFEEL-YVG 524 >gi|281205904|gb|EFA80093.1| peptidase M41 [Polysphondylium pallidum PN500] Length = 853 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + ++L A + PK +LVGP G GKT I++ A +G PF + + F E+ Sbjct: 371 LKNPQKYKRLGAKI-----PKGAILVGPPGTGKTLIAKATAGESGVPFFTISGSDFIEM- 424 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL A Sbjct: 425 FVGVGPSR-VRDLFKEA 440 >gi|260577287|ref|ZP_05845260.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2] gi|259020468|gb|EEW23791.1| ATP-dependent chaperone ClpB [Rhodobacter sp. SW2] Length = 870 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 10/87 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL + +IGQ+ A AVA A+R R R A L DE P + L +GPTGVGKT +++ + Sbjct: 562 ELGKRVIGQRRALTAVANAVR-RAR-----AGLNDEKRPLGSFLFLGPTGVGKTELTKAV 615 Query: 74 ARLA---GAPFIKVEVTKFTEIGYVGR 97 A A +++++++F E V R Sbjct: 616 AEYLFDDDAAMVRIDMSEFMEKHAVSR 642 >gi|217968790|ref|YP_002354024.1| ATPase AAA [Thauera sp. MZ1T] gi|217506117|gb|ACK53128.1| AAA ATPase central domain protein [Thauera sp. MZ1T] Length = 781 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 15/97 (15%) Query: 33 ALRNRWRRQQLPADLRDELM-------------PKNILLVGPTGVGKTAISRRLARLAGA 79 AL RW LPAD+R+ L+ P+ ILL GP G GK+ +++ A Sbjct: 266 ALAARWADIALPADVRETLLAGLVHFAYGDAAAPRGILLKGPPGTGKSLVAQAFGDCVEA 325 Query: 80 PFIKVEVT--KFTEIGYVGRNVEQIIRDLVDVAINIV 114 F K V K IG NV ++ + A IV Sbjct: 326 TFFKCSVAELKGRHIGESAGNVRELWARAREAAPAIV 362 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +P+ +LL GP G GKT I+R LA+ AG FI + + Y+G+ +I + Sbjct: 545 VPRALLLYGPPGTGKTQIARTLAKEAGVAFIARSTAEL-KGQYLGQAASRIAQSF 598 >gi|255552398|ref|XP_002517243.1| Mitochondrial respiratory chain complexes assembly protein AFG3, putative [Ricinus communis] gi|223543614|gb|EEF45143.1| Mitochondrial respiratory chain complexes assembly protein AFG3, putative [Ricinus communis] Length = 802 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 PK +LL GP G GKT +++ +A AG PF+ T F E+ +VG Sbjct: 343 CPKGVLLHGPPGTGKTLLAKAIAGEAGLPFLAANGTDFVEM-FVG 386 >gi|254393706|ref|ZP_05008829.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064] gi|294813216|ref|ZP_06771859.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC 27064] gi|326441673|ref|ZP_08216407.1| putative ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064] gi|197707316|gb|EDY53128.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064] gi|294325815|gb|EFG07458.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC 27064] Length = 841 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 547 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 548 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 590 >gi|217976966|ref|YP_002361113.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2] gi|217502342|gb|ACK49751.1| ATP-dependent metalloprotease FtsH [Methylocella silvestris BL2] Length = 643 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL+GP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 188 IPRGVLLIGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 244 >gi|170738214|ref|YP_001779474.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3] gi|169820402|gb|ACA94984.1| ATP-dependent metalloprotease FtsH [Burkholderia cenocepacia MC0-3] Length = 658 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 188 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 241 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 242 FVGVGAAR-VRDLFEQA 257 >gi|16186223|gb|AAL14019.1| SD09735p [Drosophila melanogaster] Length = 523 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 21/155 (13%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AK A+ RR L +R P+ +LL GP G GKT I++ +A A A Sbjct: 252 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 309 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALV 139 F + + T +VG + E++++ L VA + A I +E +D+L+ Sbjct: 310 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVAA----------AHQPAIIFIDE--VDSLL 355 Query: 140 GKTATSNTREVFRKKLR-----DGEISDKEIDIEV 169 K + + R K DG S++EI + V Sbjct: 356 SKRSANENESTLRLKNEFLIHLDGAASNEEIRVLV 390 >gi|183600360|ref|ZP_02961853.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827] gi|188020151|gb|EDU58191.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827] Length = 656 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|74141261|dbj|BAE35936.1| unnamed protein product [Mus musculus] Length = 418 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 M LT + P + +++ I +Q+ + AV + L + +Q+ D P+ +L+ G Sbjct: 152 MMLTSDQKPDVMYADIVGMDIQKQEVREAVELPLTHFELYKQIGID-----PPRGVLMYG 206 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 P G GKT +++ +A A FI+V ++F + Y+G +++RD+ +A Sbjct: 207 PPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 254 >gi|68535364|ref|YP_250069.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411] gi|68262963|emb|CAI36451.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411] Length = 885 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ DA +AV+ A+R R R A L+D P + + Sbjct: 508 FKLTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 561 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 562 FAGPSGVGKTELSKALAEF 580 >gi|89074749|ref|ZP_01161207.1| Putative ComM-related protein [Photobacterium sp. SKA34] gi|89049513|gb|EAR55074.1| Putative ComM-related protein [Photobacterium sp. SKA34] Length = 508 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 21/80 (26%) Query: 2 KLTFNFS--PREIVSELDRY---IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNI 56 +L NFS P+E LDR IIGQQ KRA+ IA N+ Sbjct: 172 QLALNFSEQPQETAVPLDRDMQDIIGQQQGKRALEIAAAGG----------------HNV 215 Query: 57 LLVGPTGVGKTAISRRLARL 76 L +GP G GKT ++ RL L Sbjct: 216 LFLGPPGTGKTMLASRLCDL 235 >gi|150017388|ref|YP_001309642.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] gi|149903853|gb|ABR34686.1| ATP-dependent metalloprotease FtsH [Clostridium beijerinckii NCIMB 8052] Length = 578 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G ++AK + V L+N + Q+ A MPK ++L G G GKT +++ +A Sbjct: 151 VAGNEEAKESLMDVVDFLKNPEKYQKYGAR-----MPKGVILYGDPGTGKTLLAKAVAGE 205 Query: 77 AGAPFIKVEVTKFTEIGYVG 96 AG PF + + F ++ YVG Sbjct: 206 AGVPFYALSGSDFVQV-YVG 224 >gi|119356264|ref|YP_910908.1| FtsH peptidase [Chlorobium phaeobacteroides DSM 266] gi|119353613|gb|ABL64484.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Chlorobium phaeobacteroides DSM 266] Length = 652 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT +++ +A A PF + F E+ +VG + +RDL + A Sbjct: 242 IPKGVLLLGPPGTGKTLLAKAIAGEAKVPFFSISGADFVEM-FVGVGASR-VRDLFEQA 298 >gi|326778547|ref|ZP_08237812.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658880|gb|EGE43726.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1] Length = 863 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 515 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 568 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 569 FAGPSGVGKTELSKTLAEFLFGDEDALISLDMSEFSEKHTVSR 611 >gi|302544384|ref|ZP_07296726.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces hygroscopicus ATCC 53653] gi|302462002|gb|EFL25095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces himastatinicus ATCC 53653] Length = 840 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 12/103 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + +IGQ+DA +A++ A+R R R A L+D P + + Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIR-RTR-----AGLKDPKRPGGSFI 546 Query: 58 LVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEIGYVGR 97 GP+GVGKT +S+ LA I +++++F+E V R Sbjct: 547 FAGPSGVGKTELSKTLAEFLFGDEDAMISLDMSEFSEKHTVSR 589 >gi|261345167|ref|ZP_05972811.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM 4541] gi|282566859|gb|EFB72394.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM 4541] Length = 655 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|225158869|ref|ZP_03725184.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2] gi|224802561|gb|EEG20818.1| Microtubule-severing ATPase [Opitutaceae bacterium TAV2] Length = 709 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK ILLVGP G GKT +++ +A A PF V + F E+ +VG + +RD+ + Sbjct: 254 IPKGILLVGPPGTGKTLLAKAVAGEAEVPFFSVSGSDFVEM-FVGVGASR-VRDMFE 308 >gi|158298490|ref|XP_318657.4| AGAP009625-PA [Anopheles gambiae str. PEST] gi|157013907|gb|EAA13814.4| AGAP009625-PA [Anopheles gambiae str. PEST] Length = 395 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++V T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGMRFINLDVAMLTDKWY 167 >gi|115911530|ref|XP_783737.2| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus purpuratus] gi|115955183|ref|XP_001188077.1| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus purpuratus] Length = 603 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK +LL GP G GKT I + +A +GA F + + T +VG E+++R L VA Sbjct: 361 PKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGEG-EKMVRALFAVA 416 >gi|58040123|ref|YP_192087.1| cell division protein FtsH [Gluconobacter oxydans 621H] gi|58002537|gb|AAW61431.1| Cell division protein FtsH [Gluconobacter oxydans 621H] Length = 634 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 +PK LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + Sbjct: 188 IPKGALLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFE 242 >gi|53802726|ref|YP_115493.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus capsulatus str. Bath] gi|53756487|gb|AAU90778.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Methylococcus capsulatus str. Bath] Length = 859 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLA 74 L R ++GQQ+A AVA A+R R R A L D P + L +GPTGVGKT + + LA Sbjct: 566 LSRRVVGQQEAITAVANAIR-RSR-----AGLADPNRPNGSFLFLGPTGVGKTELCKALA 619 Query: 75 RL---AGAPFIKVEVTKFTEIGYVGR 97 +++++++F E V R Sbjct: 620 EFLFDTDEAMVRIDMSEFMEKHSVAR 645 >gi|320164406|gb|EFW41305.1| katanin 60-PA [Capsaspora owczarzaki ATCC 30864] Length = 351 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%) Query: 4 TFNFSP--REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-------- 53 +FN S +++V L+R II + + R IA +R A + L+P Sbjct: 41 SFNTSGYDKDLVESLERDIISKHPSVRWTDIADLENAKRLLEEAVVLPMLLPDYFTGIRR 100 Query: 54 --KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 K +L+VGP G GKT +++ +A G F V + T Y G + E+++R L D+A Sbjct: 101 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSASTLTS-KYRG-DSEKLVRLLFDMA 157 >gi|306430715|emb|CBJ17104.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|281344710|gb|EFB20294.1| hypothetical protein PANDA_002316 [Ailuropoda melanoleuca] Length = 321 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|257053282|ref|YP_003131115.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940] gi|256692045|gb|ACV12382.1| AAA ATPase central domain protein [Halorhabdus utahensis DSM 12940] Length = 451 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 +L VGP G GKT+++R LA PF++V+++ T +G +NVE+ Sbjct: 208 LLFVGPPGTGKTSVARALAHELDLPFVEVKLSMITSQYLGETAKNVEK 255 >gi|215408545|emb|CAR31122.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|164656006|ref|XP_001729131.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966] gi|159103021|gb|EDP41917.1| hypothetical protein MGL_3598 [Malassezia globosa CBS 7966] Length = 835 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAV---AIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK+ + L+N R ++L A + P+ +L GP G GKT +++ A Sbjct: 348 VAGMDEAKQEIMEFVSFLKNPERYERLGAKI-----PRGAILSGPPGTGKTLVAKATAGE 402 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 AG PF+ V ++F E+ +VG + +RD+ A Sbjct: 403 AGVPFLSVSGSEFVEM-FVGVGPSR-VRDMFATA 434 >gi|157148747|ref|YP_001456066.1| ATP-dependent metalloprotease [Citrobacter koseri ATCC BAA-895] gi|157085952|gb|ABV15630.1| hypothetical protein CKO_04579 [Citrobacter koseri ATCC BAA-895] Length = 644 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G +AK VA LR R Q+L + PK +L+VGP G GKT +++ +A Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ +VG + +RD+ + A Sbjct: 209 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 240 >gi|149201484|ref|ZP_01878459.1| ATPase AAA-2 [Roseovarius sp. TM1035] gi|149145817|gb|EDM33843.1| ATPase AAA-2 [Roseovarius sp. TM1035] Length = 872 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 10/88 (11%) Query: 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRR 72 + L R +IGQ A +AVA A+R R R A L DE P + L +GPTGVGKT +++ Sbjct: 563 ANLHRRVIGQNTAVKAVANAVR-RAR-----AGLNDEGRPLGSFLFLGPTGVGKTELTKA 616 Query: 73 LARLA---GAPFIKVEVTKFTEIGYVGR 97 +A + +++++++F E V R Sbjct: 617 VAEFLFDDDSAMVRIDMSEFMEKHSVSR 644 >gi|90962325|ref|YP_536241.1| cell division protein [Lactobacillus salivarius UCC118] gi|90821519|gb|ABE00158.1| Cell division protein [Lactobacillus salivarius UCC118] Length = 692 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 223 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 279 >gi|77359819|ref|YP_339394.1| cell division protease [Pseudoalteromonas haloplanktis TAC125] gi|76874730|emb|CAI85951.1| cell division protease ftsH, ATP-dependent zinc-metallo protease [Pseudoalteromonas haloplanktis TAC125] Length = 630 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ + Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 158 LRDPSKFQKLGGSI-----PKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM- 211 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 212 FVGVGASR-VRDMFEQA 227 >gi|116747494|ref|YP_844181.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Syntrophobacter fumaroxidans MPOB] gi|116696558|gb|ABK15746.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Syntrophobacter fumaroxidans MPOB] Length = 776 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 31/43 (72%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 + L +GPTGVGKT ++++LAR+ G F++ +++++ E V R Sbjct: 496 SFLFIGPTGVGKTEVAKQLARILGVNFLRFDMSEYMEKHTVAR 538 >gi|330446996|ref|ZP_08310647.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491187|dbj|GAA05144.1| ATP-dependent chaperone ClpB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 858 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 EL +IGQ +A AVA A+R R R A L D P + L +GPTGVGKT + + L Sbjct: 565 ELHHRVIGQDEAVEAVANAIR-RSR-----AGLADPQRPIGSFLFLGPTGVGKTELCKSL 618 Query: 74 ARL---AGAPFIKVEVTKFTEIGYVGRNV 99 A + +++++++F E V R V Sbjct: 619 ANFMFDSEEAMVRIDMSEFMEKHSVARLV 647 >gi|327274725|ref|XP_003222127.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1 [Anolis carolinensis] Length = 715 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|325684696|gb|EGD26850.1| cell division protein FtsH [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 704 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N R +L A + P +LL GP G GKT +++ +A AG PF + + F E+ Sbjct: 208 LKNPARYTKLGARI-----PSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM- 261 Query: 94 YVGRNVEQIIRDL 106 +VG + +RDL Sbjct: 262 FVGVGASR-VRDL 273 >gi|306430645|emb|CBJ17069.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|237784954|ref|YP_002905659.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM 44385] gi|237757866|gb|ACR17116.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM 44385] Length = 903 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ+DA ++V+ A+R R R A L+D P + + Sbjct: 513 FKLTEEESDRLLHMEEELHKRIIGQEDAVKSVSRAIR-RTR-----AGLKDPRRPSGSFI 566 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 567 FAGPSGVGKTELSKALAEF 585 >gi|224044753|ref|XP_002188188.1| PREDICTED: YME1-like 1 isoform 1 [Taeniopygia guttata] Length = 717 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 315 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 364 >gi|212710002|ref|ZP_03318130.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM 30120] gi|212687411|gb|EEB46939.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM 30120] Length = 655 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|195471025|ref|XP_002087806.1| GE14905 [Drosophila yakuba] gi|194173907|gb|EDW87518.1| GE14905 [Drosophila yakuba] Length = 526 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I G + AK A+ RR L +R P+ +LL GP G GKT I++ +A A A Sbjct: 255 IAGLESAKSTFLEAIIMPLRRPDLFTGVR--CPPRGVLLFGPPGTGKTLIAKSIASQAKA 312 Query: 80 PFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 F + + T +VG + E++++ L VA Sbjct: 313 KFFSINPSSLTS-KWVG-DAEKLVKTLFAVA 341 >gi|194859742|ref|XP_001969441.1| GG23952 [Drosophila erecta] gi|190661308|gb|EDV58500.1| GG23952 [Drosophila erecta] Length = 369 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK ILL GP G GKT I++ A+ AG FI ++V T+ Y Sbjct: 132 PKGILLHGPPGCGKTLIAKATAKEAGMRFINLDVAVLTDKWY 173 >gi|149634676|ref|XP_001506505.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 3 [Ornithorhynchus anatinus] Length = 723 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 321 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 370 >gi|119470166|ref|ZP_01612932.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Alteromonadales bacterium TW-7] gi|119446587|gb|EAW27861.1| ATP-dependent specificity subunit of clpA-clpP serine protease [Alteromonadales bacterium TW-7] Length = 753 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 9/94 (9%) Query: 8 SPREIVSELDR----YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTG 63 S +E + +DR + GQ + A+ A+R R L ++ E + L GPTG Sbjct: 446 SDKETLKNIDRNLKMLVFGQDQSIDALTSAIR--LSRSGLTSE---EKPVGSFLFAGPTG 500 Query: 64 VGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 VGKT ++++LA+ G FI+ +++++ E + R Sbjct: 501 VGKTEVTKQLAKCMGVEFIRFDMSEYVERHAISR 534 >gi|88607130|ref|YP_505053.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma phagocytophilum HZ] gi|88598193|gb|ABD43663.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Anaplasma phagocytophilum HZ] Length = 773 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R++ L + I GQ +A V A+R A +R P L GPTGVGKT Sbjct: 464 RDLEDNLKKVIFGQDEAITHVVDAIR------IAKAGMRSSQKPLACYLFAGPTGVGKTE 517 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 + R+ A+ G I+ +++++ E V R + Sbjct: 518 LVRQFAKCMGMKLIRFDMSEYVESHTVSRMI 548 >gi|74317151|ref|YP_314891.1| membrane protease FtsH catalytic subunit [Thiobacillus denitrificans ATCC 25259] gi|74056646|gb|AAZ97086.1| peptidase M41, FtsH [Thiobacillus denitrificans ATCC 25259] Length = 630 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 186 IPRGVLMVGPPGTGKTLLARSIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 242 >gi|309782665|ref|ZP_07677386.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA] gi|308918443|gb|EFP64119.1| ATP-dependent metalloprotease FtsH [Ralstonia sp. 5_7_47FAA] Length = 647 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 205 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFSQA 261 >gi|227891605|ref|ZP_04009410.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus salivarius ATCC 11741] gi|301300311|ref|ZP_07206518.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866752|gb|EEJ74173.1| cell division protein FtsH, ATP-dependent zinc metallopeptidase [Lactobacillus salivarius ATCC 11741] gi|300214976|gb|ADJ79392.1| Cell division protein [Lactobacillus salivarius CECT 5713] gi|300852084|gb|EFK79761.1| ATP-dependent metallopeptidase HflB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 692 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + + F E+ +VG + +RDL + A Sbjct: 223 IPSGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFENA 279 >gi|198423267|ref|XP_002130593.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 [Ciona intestinalis] Length = 416 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ K AV + L + +Q+ D P+ +L+ GP G GKT +++ +A A Sbjct: 170 IQKQEVKEAVELPLTHFELYKQIGID-----PPRGVLMFGPPGCGKTMLAKAVAHHTTAS 224 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RD+ +A Sbjct: 225 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 252 >gi|156120349|ref|NP_001095320.1| ATP-dependent metalloprotease YME1L1 [Bos taurus] gi|151557121|gb|AAI50072.1| YME1L1 protein [Bos taurus] gi|296481444|gb|DAA23559.1| YME1-like 1 [Bos taurus] Length = 717 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|148979037|ref|ZP_01815282.1| cell division protein FtsH [Vibrionales bacterium SWAT-3] gi|145962010|gb|EDK27298.1| cell division protein FtsH [Vibrionales bacterium SWAT-3] Length = 655 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + P ILLVGP G GKT +++ +A A PF + + F E+ Sbjct: 173 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 226 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 227 FVGVGASR-VRDMFEQA 242 >gi|148224030|ref|NP_001088668.1| ATPase family, AAA domain containing 1 [Xenopus laevis] gi|56269500|gb|AAH87292.1| LOC495930 protein [Xenopus laevis] Length = 360 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|121605505|ref|YP_982834.1| ATP-dependent metalloprotease FtsH [Polaromonas naphthalenivorans CJ2] gi|120594474|gb|ABM37913.1| membrane protease FtsH catalytic subunit [Polaromonas naphthalenivorans CJ2] Length = 642 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ D A Sbjct: 193 IPRGLLLVGPPGTGKTLLAKGIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFDNA 249 >gi|313206718|ref|YP_004045895.1| ATP-dependent metalloprotease ftsh [Riemerella anatipestifer DSM 15868] gi|312446034|gb|ADQ82389.1| ATP-dependent metalloprotease FtsH [Riemerella anatipestifer DSM 15868] gi|315023788|gb|EFT36790.1| Cell division protein ftsH [Riemerella anatipestifer RA-YM] gi|325335842|gb|ADZ12116.1| ATP-dependent Zn protease [Riemerella anatipestifer RA-GD] Length = 658 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 218 IPKGVLLVGPPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEM-FVGVGASR-VRDL 270 >gi|302669466|ref|YP_003829426.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus B316] gi|302393939|gb|ADL32844.1| ATP-dependent metallopeptidase HflB1 [Butyrivibrio proteoclasticus B316] Length = 756 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 20 IIGQQDAKRA---VAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 + G+ +AK + V L N + ++ A L PK LLVGP G GKT +++ +A Sbjct: 195 VAGEDEAKESLVEVVDFLHNPAKYAKIGAKL-----PKGALLVGPPGTGKTLLAKAVAGE 249 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 A PF + + F E+ YVG + +RDL A Sbjct: 250 AHVPFYSLAGSDFIEL-YVGVGASR-VRDLFSEA 281 >gi|260578411|ref|ZP_05846325.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Corynebacterium jeikeium ATCC 43734] gi|258603433|gb|EEW16696.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Corynebacterium jeikeium ATCC 43734] Length = 885 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 9/79 (11%) Query: 1 MKLTFNFSPR--EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NIL 57 KLT S R + EL + IIGQ DA +AV+ A+R R R A L+D P + + Sbjct: 508 FKLTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIR-RTR-----AGLKDPKRPSGSFI 561 Query: 58 LVGPTGVGKTAISRRLARL 76 GP+GVGKT +S+ LA Sbjct: 562 FAGPSGVGKTELSKALAEF 580 >gi|303278730|ref|XP_003058658.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459818|gb|EEH57113.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1119 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK ++L GP G GKT ++R +A +GA F + ++F E+ +VG + +RDL Sbjct: 654 VPKGVMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEM-FVGVGAAR-VRDL 706 >gi|268592831|ref|ZP_06127052.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131] gi|291311617|gb|EFE52070.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131] Length = 659 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 171 LREPARFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 224 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 225 FVGVGASR-VRDMFEQA 240 >gi|197334360|ref|YP_002155235.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11] gi|197315850|gb|ACH65297.1| ATP-dependent metallopeptidase HflB [Vibrio fischeri MJ11] Length = 657 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P +LLVGP G GKT I++ +A A PF + + F E+ Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 226 FVGVGASR-VRDMFEQA 241 >gi|169236655|ref|YP_001689855.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|167727721|emb|CAP14509.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 438 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103 +L VGP G GKT+ +R LA PF++V+++ T +G +NVE++ Sbjct: 205 LLFVGPPGTGKTSTARGLAHQLDLPFVEVKLSMITSQYLGETAKNVEKVF 254 >gi|134099492|ref|YP_001105153.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea NRRL 2338] gi|133912115|emb|CAM02228.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea NRRL 2338] Length = 602 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRL 73 EL + IIGQ DA +AV+ A+R R R A L+D P + + GP+GVGKT +S+ L Sbjct: 272 ELHKRIIGQDDAVKAVSQAIR-RTR-----AGLKDPKRPSGSFIFAGPSGVGKTELSKAL 325 Query: 74 ARL 76 A Sbjct: 326 AEF 328 >gi|147902617|ref|NP_001084592.1| YME1-like 1 [Xenopus laevis] gi|46250073|gb|AAH68681.1| MGC81087 protein [Xenopus laevis] Length = 716 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|118348546|ref|XP_001007748.1| 26S proteasome subunit P45 family protein [Tetrahymena thermophila] gi|89289515|gb|EAR87503.1| 26S proteasome subunit P45 family protein [Tetrahymena thermophila SB210] Length = 441 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Query: 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 +Q+ K AV + L QQ+ D P+ +L+ GP G GKT +++ +A A FI Sbjct: 157 KQEMKEAVELPLTYPELYQQIGID-----PPRGVLMYGPPGTGKTMMAKAVAHHTTAAFI 211 Query: 83 KVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +V ++F + Y+G +++RD+ +A Sbjct: 212 RVVGSEFVQ-KYLGEG-PRMVRDVFKLA 237 >gi|78062370|ref|YP_372278.1| FtsH-2 peptidase [Burkholderia sp. 383] gi|77970255|gb|ABB11634.1| membrane protease FtsH catalytic subunit [Burkholderia sp. 383] Length = 692 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LRN R Q+L + PK +L+VG G GKT ++R +A A PF + + F E+ Sbjct: 222 LRNPDRYQRLGGKI-----PKGVLVVGAPGTGKTLLARAVAGEAAVPFFSISGSAFVEM- 275 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 276 FVGVGAAR-VRDLFEQA 291 >gi|15790910|ref|NP_280734.1| AAA superfamily ATPase [Halobacterium sp. NRC-1] gi|10581481|gb|AAG20214.1| aaa superfamily atpase [Halobacterium sp. NRC-1] Length = 369 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQII 103 +L VGP G GKT+ +R LA PF++V+++ T +G +NVE++ Sbjct: 136 LLFVGPPGTGKTSTARGLAHQLDLPFVEVKLSMITSQYLGETAKNVEKVF 185 >gi|87123506|ref|ZP_01079357.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. RS9917] gi|86169226|gb|EAQ70482.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. RS9917] Length = 913 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 10/91 (10%) Query: 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAI 69 E+ ++L + +IGQ +A +AVA A+R R R A ++D P + L +GPTGVGKT + Sbjct: 603 ELETQLQQRVIGQPEAVQAVASAIR-RAR-----AGMKDPRRPVGSFLFLGPTGVGKTEL 656 Query: 70 SRRL-ARL--AGAPFIKVEVTKFTEIGYVGR 97 ++ L ARL +++++++F E V R Sbjct: 657 AKALAARLFDEEEALVRLDMSEFMERNAVAR 687 >gi|291401928|ref|XP_002717328.1| PREDICTED: YME1-like 1 [Oryctolagus cuniculus] Length = 715 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|261868122|ref|YP_003256044.1| ATP-dependent metallopeptidase HflB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413454|gb|ACX82825.1| ATP-dependent metallopeptidase HflB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 609 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK IL+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 182 IPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEKA 238 >gi|260591351|ref|ZP_05856809.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319] gi|260536717|gb|EEX19334.1| ATP-dependent metalloprotease FtsH [Prevotella veroralis F0319] Length = 678 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LL+GP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 216 IPKGALLIGPPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEM-FVGVGASR-VRDVFHQA 272 >gi|237725806|ref|ZP_04556287.1| ATP-dependent Clp protease [Bacteroides sp. D4] gi|229435614|gb|EEO45691.1| ATP-dependent Clp protease [Bacteroides dorei 5_1_36/D4] Length = 745 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554 >gi|218710451|ref|YP_002418072.1| cell division protein FtsH [Vibrio splendidus LGP32] gi|218323470|emb|CAV19647.1| cell division protein FtsH [Vibrio splendidus LGP32] Length = 659 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR+ R Q+L + P ILLVGP G GKT +++ +A A PF + + F E+ Sbjct: 176 LRDPSRFQKLGGKI-----PTGILLVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 229 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 230 FVGVGASR-VRDMFEQA 245 >gi|167957096|ref|ZP_02544170.1| Mg chelatase, subunit ChlI [candidate division TM7 single-cell isolate TM7c] Length = 507 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 17/77 (22%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 I GQ+ AKRA+ IA+ R NILL GP G GKT +++ L L Sbjct: 197 IYGQEQAKRAIQIAVAGRH----------------NILLSGPPGSGKTMLAKSLKNLL-P 239 Query: 80 PFIKVEVTKFTEIGYVG 96 P K E+ + T++ +G Sbjct: 240 PLSKTEIVEVTKLHNLG 256 >gi|149913689|ref|ZP_01902222.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter sp. AzwK-3b] gi|149812809|gb|EDM72638.1| ATP-dependent Clp protease ATP-binding subunit clpA [Roseobacter sp. AzwK-3b] Length = 777 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A+A +++ A LR+ P N L GPTGVGKT Sbjct: 464 KDLERSLKRVVFGQDPAIEALASSIKLAR------AGLREPDKPIGNYLFAGPTGVGKTE 517 Query: 69 ISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 ++++LA G ++ +++++ E GYVG + ++ D VD + V Sbjct: 518 VAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 574 >gi|119471555|ref|ZP_01613969.1| cell division protease ftsH, ATP-dependent zinc-metallo protease [Alteromonadales bacterium TW-7] gi|119445498|gb|EAW26784.1| cell division protease ftsH, ATP-dependent zinc-metallo protease [Alteromonadales bacterium TW-7] Length = 650 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|59711086|ref|YP_203862.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114] gi|59479187|gb|AAW84974.1| ATP-dependent zinc-metalloprotease [Vibrio fischeri ES114] Length = 657 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + P +LLVGP G GKT I++ +A A PF + + F E+ Sbjct: 172 LREPSRFQKLGGKI-----PTGVLLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM- 225 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 226 FVGVGASR-VRDMFEQA 241 >gi|301784304|ref|XP_002927570.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Ailuropoda melanoleuca] Length = 715 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|262372531|ref|ZP_06065810.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter junii SH205] gi|262312556|gb|EEY93641.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Acinetobacter junii SH205] Length = 761 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 16/104 (15%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLA 74 +L R + GQ +A A+A A++ R L A + + + GPTGVGKT ++++LA Sbjct: 454 DLKRVVFGQDEAITALASAIK--LSRAGLKAPDKP---VGSFVFAGPTGVGKTEVTKQLA 508 Query: 75 RLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLV 107 +L G ++ +++++ E GYVG + ++ D + Sbjct: 509 KLLGVELVRFDMSEYMERHAVSRLIGAPPGYVGYDQGGLLTDAI 552 >gi|225868953|ref|YP_002744901.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi subsp. zooepidemicus] gi|225702229|emb|CAW99972.1| putative ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi subsp. zooepidemicus] Length = 751 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + ++L +++IGQ DA +A A+R R L A R P + L VGPTGVGKT +S Sbjct: 446 LAADLKKHVIGQDDAVDKIAKAIRRN--RVGLGAPNR----PIGSFLFVGPTGVGKTELS 499 Query: 71 RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 ++LA L G+ I+ +++++ E V + LV V ++ EQ Sbjct: 500 KQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQVR 551 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 N IL + K A + +F + L DG ++D + Sbjct: 552 RNPYSLILLDEIEK-AHPDVMHMFLQVLDDGRLTDGQ 587 >gi|215408579|emb|CAR31139.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|187926562|ref|YP_001892907.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J] gi|241666072|ref|YP_002984431.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] gi|187728316|gb|ACD29480.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12J] gi|240868099|gb|ACS65759.1| ATP-dependent metalloprotease FtsH [Ralstonia pickettii 12D] Length = 663 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVG G GKT +++ +A AG PF + ++F E+ +VG + +RDL A Sbjct: 221 IPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGAAR-VRDLFSQA 277 >gi|47221159|emb|CAG05480.1| unnamed protein product [Tetraodon nigroviridis] Length = 714 Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|328683465|ref|NP_001126430.1| ATP-dependent metalloprotease YME1L1 [Pongo abelii] Length = 716 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|322831209|ref|YP_004211236.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602] gi|321166410|gb|ADW72109.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602] Length = 650 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|320540171|ref|ZP_08039826.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica str. Tucson] gi|320029837|gb|EFW11861.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica str. Tucson] Length = 641 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 174 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 227 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 228 FVGVGASR-VRDMFEQA 243 >gi|313905377|ref|ZP_07838743.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] gi|313469847|gb|EFR65183.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] Length = 617 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVGP G GKT +++ +A A PF + ++F E+ +VG + +RDL + A Sbjct: 206 LPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSLSGSEFVEM-FVGVGASR-VRDLFEEA 262 >gi|307294667|ref|ZP_07574509.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum L-1] gi|306879141|gb|EFN10359.1| ATP-dependent metalloprotease FtsH [Sphingobium chlorophenolicum L-1] Length = 649 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVG G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 197 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 253 >gi|294012452|ref|YP_003545912.1| cell division protease FtsH [Sphingobium japonicum UT26S] gi|292675782|dbj|BAI97300.1| cell division protease FtsH [Sphingobium japonicum UT26S] Length = 649 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK LLVG G GKT ++R +A AG PF + + F E+ +VG + +RD+ + A Sbjct: 197 IPKGALLVGSPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 253 >gi|219128649|ref|XP_002184520.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403970|gb|EEC43919.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 514 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LL GP G GKT +++ +A A PF ++F E+ YVG ++ IR+L + A Sbjct: 112 LPRGLLLTGPPGTGKTLLAKAIAGEADVPFFYSSGSQFEEV-YVGLGAKR-IRELFEAA 168 >gi|195977741|ref|YP_002122985.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974446|gb|ACG61972.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 750 Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 + ++L +++IGQ DA +A A+R R L A R P + L VGPTGVGKT +S Sbjct: 445 LAADLKKHVIGQDDAVDKIAKAIR--RNRVGLGAPNR----PIGSFLFVGPTGVGKTELS 498 Query: 71 RRLA-RLAGAP--FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127 ++LA L G+ I+ +++++ E V + LV V ++ EQ Sbjct: 499 KQLAIELFGSADNMIRFDMSEYMEKHAVAK--------LVGAPPGYVGYEEAGQLTEQVR 550 Query: 128 INAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 N IL + K A + +F + L DG ++D + Sbjct: 551 RNPYSLILLDEIEK-AHPDVMHMFLQVLDDGRLTDGQ 586 >gi|332535917|ref|ZP_08411627.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505] gi|332034704|gb|EGI71253.1| cell division protein FtsH [Pseudoalteromonas haloplanktis ANT/505] Length = 650 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|296206357|ref|XP_002750180.1| PREDICTED: ATP-dependent metalloprotease YME1L1 isoform 1 [Callithrix jacchus] Length = 716 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|215408577|emb|CAR31138.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|215408549|emb|CAR31124.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|215408541|emb|CAR31120.1| HflB protein [Candidatus Phytoplasma mali] Length = 176 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|195115631|ref|XP_002002360.1| GI13150 [Drosophila mojavensis] gi|193912935|gb|EDW11802.1| GI13150 [Drosophila mojavensis] Length = 373 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 24 QDAKRAVAIALRNR--WRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 Q+ + +V + +R+R ++R QL PK +LL GP G GKT I++ +A+ A F Sbjct: 104 QELRESVVLPVRHRDLFQRSQLWRP------PKGVLLYGPPGCGKTLIAKAMAKEADMRF 157 Query: 82 IKVEVTKFTEIGY 94 I ++V T+ Y Sbjct: 158 INLDVALLTDKWY 170 >gi|145493015|ref|XP_001432504.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399616|emb|CAK65107.1| unnamed protein product [Paramecium tetraurelia] Length = 780 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ LL GP G GKT +++ A AG PF V + F E+ +VG + +RDL A Sbjct: 374 LPRGALLAGPPGTGKTMVAKACAGEAGVPFFFVSGSDFVEM-FVGVGASR-VRDLFKQA 430 >gi|14248493|gb|AAK57555.1|AF151782_1 ATP-dependent metalloprotease FtsH1 homolog [Homo sapiens] Length = 773 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420 >gi|78185968|ref|YP_374011.1| peptidase M41, FtsH [Chlorobium luteolum DSM 273] gi|123583630|sp|Q3B6R3|FTSH_PELLD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|78165870|gb|ABB22968.1| membrane protease FtsH catalytic subunit [Chlorobium luteolum DSM 273] Length = 706 Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RDL Sbjct: 231 LPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEM-FVGVGAAR-VRDL 283 >gi|317420108|emb|CBN82144.1| ATP-dependent metalloprotease YME1L1 [Dicentrarchus labrax] Length = 701 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 296 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 345 >gi|301607162|ref|XP_002933186.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Xenopus (Silurana) tropicalis] Length = 727 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 325 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 374 >gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi] gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi] Length = 883 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN---VEQIIRDLVDV 109 P+ ILL GP G GKT ++ +A PF+KV + G G + + QI RD + Sbjct: 259 PRGILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVS-GMSGESEAKIRQIFRDAISN 317 Query: 110 AINIVRESRRDEV---REQASINAEERILDALV 139 A +I+ D + R+ AS E+RI+ L+ Sbjct: 318 APSIIFIDEIDAILSKRDNASKEMEKRIVAQLI 350 >gi|262363432|gb|ACY60153.1| cell division protein [Yersinia pestis D106004] Length = 573 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 LR R Q+L + PK +L+VGP G GKT +++ +A A PF + + F E+ Sbjct: 134 LREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM- 187 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RD+ + A Sbjct: 188 FVGVGASR-VRDMFEQA 203 >gi|255318896|ref|ZP_05360122.1| cell division protease FtsH [Acinetobacter radioresistens SK82] gi|262378849|ref|ZP_06072006.1| cell division protein [Acinetobacter radioresistens SH164] gi|255304152|gb|EET83343.1| cell division protease FtsH [Acinetobacter radioresistens SK82] gi|262300134|gb|EEY88046.1| cell division protein [Acinetobacter radioresistens SH164] Length = 631 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|256823581|ref|YP_003147544.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069] gi|256797120|gb|ACV27776.1| ATP-dependent metalloprotease FtsH [Kangiella koreensis DSM 16069] Length = 641 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 191 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 247 >gi|212691639|ref|ZP_03299767.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855] gi|212665828|gb|EEB26400.1| hypothetical protein BACDOR_01134 [Bacteroides dorei DSM 17855] Length = 745 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554 >gi|194227083|ref|XP_001495983.2| PREDICTED: YME1-like 1 (S. cerevisiae) [Equus caballus] Length = 715 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|78043977|ref|YP_359086.1| cell division protein FtsH [Carboxydothermus hydrogenoformans Z-2901] gi|77996092|gb|ABB14991.1| cell division protein FtsH [Carboxydothermus hydrogenoformans Z-2901] Length = 619 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + +L A + PK +LL G G GKT ++R +A AG PF + + F E+ Sbjct: 177 LKNPRKYNELGARI-----PKGVLLFGQPGTGKTLLARAIAGEAGVPFFSISGSDFVEM- 230 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL + A Sbjct: 231 FVGVGASR-VRDLFEQA 246 >gi|29840520|ref|NP_829626.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC] gi|29834869|gb|AAP05504.1| cell division protein FtsH, putative [Chlamydophila caviae GPIC] Length = 913 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT I++ ++ A PF + + F E+ +VG + IRD+ + A Sbjct: 458 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 514 >gi|55731422|emb|CAH92425.1| hypothetical protein [Pongo abelii] Length = 716 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|312138354|ref|YP_004005690.1| clp peptidase ATP-binding subunit [Rhodococcus equi 103S] gi|311887693|emb|CBH47005.1| putative Clp peptidase ATP-binding subunit [Rhodococcus equi 103S] Length = 810 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 21/102 (20%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 R + EL R ++GQ+DA +A+A A+R R R + D P + L +GPTGVGKT Sbjct: 503 RRLEDELHRRVVGQEDAVKAIARAVR-RSR-----TGMGDPRRPVGSFLFLGPTGVGKTE 556 Query: 69 ISRRLAR-LAG--APFIKVEVTKFTE-----------IGYVG 96 +++ LA+ L G + +++++++F E GYVG Sbjct: 557 LAKALAQSLFGDESKMLRLDMSEFGERHTASRLVGAPPGYVG 598 >gi|307177290|gb|EFN66468.1| ATPase family AAA domain-containing protein 1-B [Camponotus floridanus] Length = 378 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 39 RRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 +R++L D + PK +LL GP G GKT I++ AR A FI ++V+ T+ Y Sbjct: 118 QRKELFEDSQLTQAPKGVLLYGPPGCGKTMIAKATAREAKTRFINLDVSILTDKWY 173 >gi|306430711|emb|CBJ17102.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430723|emb|CBJ17108.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430745|emb|CBJ17119.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|285017955|ref|YP_003375666.1| cell division protein ftsh (ATP-dependent zinc metallopeptidase) [Xanthomonas albilineans GPE PC73] gi|283473173|emb|CBA15679.1| probable cell division protein ftsh (atp-dependent zinc metallopeptidase) [Xanthomonas albilineans] Length = 644 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L+VGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 197 IPRGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 253 >gi|297300679|ref|XP_002805638.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 1 [Macaca mulatta] gi|297300683|ref|XP_002805640.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like isoform 3 [Macaca mulatta] gi|67970978|dbj|BAE01831.1| unnamed protein product [Macaca fascicularis] Length = 717 Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 315 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 364 >gi|332993369|gb|AEF03424.1| ATP-dependent metalloprotease FtsH [Alteromonas sp. SN2] Length = 645 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 185 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 241 >gi|332833800|ref|XP_507710.3| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Pan troglodytes] Length = 773 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420 >gi|315127240|ref|YP_004069243.1| cell division protease [Pseudoalteromonas sp. SM9913] gi|315015754|gb|ADT69092.1| cell division protease [Pseudoalteromonas sp. SM9913] Length = 632 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 171 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227 >gi|313884430|ref|ZP_07818191.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola ACS-139-V-Col8] gi|312620214|gb|EFR31642.1| ATP-dependent metallopeptidase HflB [Eremococcus coleocola ACS-139-V-Col8] Length = 688 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LL GP G GKT +++ +A AG PF + ++F E+ +VG + +RDL + A Sbjct: 220 IPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEM-FVGVGASR-VRDLFENA 276 >gi|237711935|ref|ZP_04542416.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA] gi|229454630|gb|EEO60351.1| ATP-dependent Clp protease [Bacteroides sp. 9_1_42FAA] Length = 745 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query: 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAG 78 I GQ++A V A+ Q A L DE P ++L VGPTGVGKT +++ LA G Sbjct: 454 IYGQEEAVCQVVEAV------QMAKAGLLDENKPLASLLFVGPTGVGKTEVAKVLASELG 507 Query: 79 APFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 + +++++TE GYVG ++ D + N V Sbjct: 508 IALQRFDMSEYTEKHTVAKLIGSPAGYVGYEDGGLLTDAIRKTPNCV 554 >gi|257386800|ref|YP_003176573.1| ATPase AAA [Halomicrobium mukohataei DSM 12286] gi|257169107|gb|ACV46866.1| AAA ATPase central domain protein [Halomicrobium mukohataei DSM 12286] Length = 459 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE--IGYVGRNVEQ 101 +L VGP G GKT+++R LA+ PF++V+++ T +G +NVE+ Sbjct: 208 KLLFVGPPGTGKTSVARALAQDLDLPFVEVKLSMITSQYLGETAKNVEK 256 >gi|237844257|ref|XP_002371426.1| clpB protein, putative [Toxoplasma gondii ME49] gi|211969090|gb|EEB04286.1| clpB protein, putative [Toxoplasma gondii ME49] Length = 970 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 12/87 (13%) Query: 16 LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 L +IGQ DA +AVA A+ R R A L E MP + L +GPTGVGKT +++ L Sbjct: 583 LHSRVIGQDDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635 Query: 74 AR---LAGAPFIKVEVTKFTEIGYVGR 97 A + I++++++F+E V R Sbjct: 636 AMEMFHSEKNLIRIDMSEFSEAHSVSR 662 >gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus Nankai-3] gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus Nankai-3] Length = 723 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108 PK +LL GP G GKT +++ +A AGA F + ++K+ +G N+ +I D + Sbjct: 210 PKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKY--VGETEENLRKIFEDAEE 267 Query: 109 VAINIVRESRRDEV---REQASINAEER-------ILDALVGK-----TATSNTREVFRK 153 A +I+ D V R++AS E R ++D L G+ A +N + Sbjct: 268 EAPSIIFIDEIDSVAPKRDEASGEVERRMVAQLLTLMDGLGGRGQVVVIAATNRPDSLDG 327 Query: 154 KLRDGEISDKEIDIEVAD 171 LR D+E+ I V D Sbjct: 328 ALRRPGRFDRELTIGVPD 345 >gi|90416125|ref|ZP_01224057.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium HTCC2207] gi|90331850|gb|EAS47064.1| ATP-dependent metalloprotease FtsH [marine gamma proteobacterium HTCC2207] Length = 649 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFEQA 245 >gi|7657689|ref|NP_055078.1| ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Homo sapiens] gi|5689742|emb|CAB51858.1| ATP-dependent metalloprotease YME1L [Homo sapiens] gi|18645121|gb|AAH24032.1| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|23270684|gb|AAH23507.1| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|37182091|gb|AAQ88848.1| YME1L1 [Homo sapiens] gi|55957857|emb|CAI12217.1| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|55958289|emb|CAI16906.1| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|119606474|gb|EAW86068.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|119606476|gb|EAW86070.1| YME1-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens] gi|168275762|dbj|BAG10601.1| ATP-dependent metalloprotease YME1L1 [synthetic construct] Length = 716 Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|332833796|ref|XP_003312540.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Pan troglodytes] Length = 716 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|306430727|emb|CBJ17110.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430729|emb|CBJ17111.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430731|emb|CBJ17112.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430735|emb|CBJ17114.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430737|emb|CBJ17115.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430739|emb|CBJ17116.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|302875741|ref|YP_003844374.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|307689172|ref|ZP_07631618.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] gi|302578598|gb|ADL52610.1| ATP-dependent metalloprotease FtsH [Clostridium cellulovorans 743B] Length = 579 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%) Query: 20 IIGQQDAKRAVAIA---LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL 76 I G ++AK +V L+N + ++ A MPK I+L G G GKT +++ +A Sbjct: 151 IAGNEEAKESVMDIIDFLKNPQKYREYGAR-----MPKGIILYGDPGTGKTLLAKAVAGE 205 Query: 77 AGAPFIKVEVTKFTEIGYVGRNVEQI 102 AG PF + + F ++ YVG +I Sbjct: 206 AGVPFYAMSGSDFIQV-YVGVGASRI 230 >gi|195397604|ref|XP_002057418.1| GJ18117 [Drosophila virilis] gi|194141072|gb|EDW57491.1| GJ18117 [Drosophila virilis] Length = 376 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 24 QDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIK 83 QD + +V + +R+R L + + P+ +LL GP G GKT I++ A+ AG FI Sbjct: 107 QDLRESVVLPVRHR----DLFKESKLWQAPRGVLLHGPPGCGKTLIAKATAKEAGMRFIN 162 Query: 84 VEVTKFTEIGY 94 ++V T+ Y Sbjct: 163 LDVAILTDKWY 173 >gi|188996041|ref|YP_001930292.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp. YO3AOP1] gi|188931108|gb|ACD65738.1| ATP-dependent metalloprotease FtsH [Sulfurihydrogenibium sp. YO3AOP1] Length = 625 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL G GVGKT +++ +A A PFI + + F E+ +VG + +RDL + A Sbjct: 179 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 234 >gi|158256020|dbj|BAF83981.1| unnamed protein product [Homo sapiens] Length = 716 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 314 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 363 >gi|126321956|ref|XP_001371403.1| PREDICTED: similar to AFG3 ATPase family gene 3-like 2 (yeast) [Monodelphis domestica] Length = 851 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Query: 34 LRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 L+N + Q L A + PK +L GP G GKT +++ A A PFI V ++F E+ Sbjct: 371 LKNPKQYQDLGAKI-----PKGAILTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEM- 424 Query: 94 YVGRNVEQIIRDLVDVA 110 +VG + +RDL VA Sbjct: 425 FVGVGPAR-VRDLFSVA 440 >gi|118602186|ref|YP_903401.1| ATP-dependent metalloprotease FtsH [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567125|gb|ABL01930.1| membrane protease FtsH catalytic subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 640 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LLVGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 183 IPKGVLLVGPPGTGKTLLAKAIAGEADVPFFFISGSDFVEM-FVGVGASR-VRDMFEQA 239 >gi|118588321|ref|ZP_01545730.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM 12614] gi|118439027|gb|EAV45659.1| metalloprotease (cell division protein) FtsH [Stappia aggregata IAM 12614] Length = 639 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|73948849|ref|XP_535172.2| PREDICTED: similar to YME1-like 1 isoform 3 [Canis familiaris] Length = 804 Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 402 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 451 >gi|332240522|ref|XP_003269436.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like isoform 1 [Nomascus leucogenys] Length = 756 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 354 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 403 >gi|325282674|ref|YP_004255215.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] gi|324314483|gb|ADY25598.1| ATP-dependent metalloprotease FtsH [Deinococcus proteolyticus MRP] Length = 655 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P +LLVGP G GKT +++ +A AG P+ V + F E+ +VG + +RDL + A Sbjct: 225 IPHGLLLVGPPGSGKTLLAKAVAGEAGVPYFAVSGSDFVEM-FVGVGAAR-VRDLFEQA 281 >gi|262369450|ref|ZP_06062778.1| cell division protein [Acinetobacter johnsonii SH046] gi|262315518|gb|EEY96557.1| cell division protein [Acinetobacter johnsonii SH046] Length = 630 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 189 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEM-FVGVGASR-VRDMFEQA 245 >gi|254697961|ref|ZP_05159789.1| FtsH, cell division protein FtsH [Brucella abortus bv. 2 str. 86/8/59] Length = 215 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 16 IPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 72 >gi|254472982|ref|ZP_05086380.1| cell division protease FtsH [Pseudovibrio sp. JE062] gi|211957703|gb|EEA92905.1| cell division protease FtsH [Pseudovibrio sp. JE062] Length = 641 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 187 IPRGVLLVGPPGTGKTLTARAVAGEANVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 243 >gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens] Length = 769 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDL 106 PK +LL GP G GKT +++ +A AG PF +F E+ +VG + +RDL Sbjct: 265 PKGVLLYGPPGTGKTLLAKAIAGEAGVPFFSASGAEFVEM-FVGVAAAR-VRDL 316 >gi|126341222|ref|XP_001367162.1| PREDICTED: similar to ATP-dependent metalloprotease YME1L isoform 1 [Monodelphis domestica] Length = 715 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 313 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 362 >gi|308808586|ref|XP_003081603.1| putative cell division protein FtsH3 [Oryza sativa (ISS) [Ostreococcus tauri] gi|116060068|emb|CAL56127.1| putative cell division protein FtsH3 [Oryza sativa (ISS) [Ostreococcus tauri] Length = 749 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 P ++LVG G GKT ++R +A AG PFI + ++F E+ G Sbjct: 294 PSGVMLVGAPGTGKTLLARAVAGEAGVPFISISASEFVELSRYG 337 >gi|114631648|ref|XP_001138328.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 298 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 PK +LL GP G GKT I++ A+ AG FI ++ + T+ Y Sbjct: 126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWY 167 >gi|114762057|ref|ZP_01441525.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Pelagibaca bermudensis HTCC2601] gi|114545081|gb|EAU48084.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Roseovarius sp. HTCC2601] Length = 776 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%) Query: 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTA 68 +++ L R + GQ A A++ A++ A LR+ P N L GPTGVGKT Sbjct: 463 KDLEKTLKRVVFGQDTAIEALSSAIKLAR------AGLREPEKPIGNYLFAGPTGVGKTE 516 Query: 69 ISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 ++++LA G ++ +++++ E V R Sbjct: 517 VAKQLASTLGVELLRFDMSEYMEKHAVSR 545 >gi|21327685|ref|NP_647473.1| ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Homo sapiens] gi|46397258|sp|Q96TA2|YMEL1_HUMAN RecName: Full=ATP-dependent zinc metalloprotease YME1L1; AltName: Full=ATP-dependent metalloprotease FtsH1; AltName: Full=Meg-4; AltName: Full=Presenilin-associated metalloprotease; Short=PAMP; AltName: Full=YME1-like protein 1 gi|55957858|emb|CAC19650.2| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|55958290|emb|CAI16907.1| YME1-like 1 (S. cerevisiae) [Homo sapiens] gi|119606475|gb|EAW86069.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens] gi|119606478|gb|EAW86072.1| YME1-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens] Length = 773 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 371 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 420 >gi|88860504|ref|ZP_01135142.1| cell division protease ftsH, ATP-dependent zinc-metallo protease [Pseudoalteromonas tunicata D2] gi|88817702|gb|EAR27519.1| cell division protease ftsH, ATP-dependent zinc-metallo protease [Pseudoalteromonas tunicata D2] Length = 631 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +L+VGP G GKT +++ +A A PF + + F E+ +VG + +RD+ + A Sbjct: 171 IPKGVLMVGPPGTGKTLLAKAVAGEAKVPFFTISGSDFVEM-FVGVGASR-VRDMFEQA 227 >gi|84514618|ref|ZP_01001982.1| Chaperone ClpB [Loktanella vestfoldensis SKA53] gi|84511669|gb|EAQ08122.1| Chaperone ClpB [Loktanella vestfoldensis SKA53] Length = 882 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 10/86 (11%) Query: 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLA 74 L + +IGQ+ A RAVA A+R R R A L DE P + L +GPTGVGKT +++ +A Sbjct: 575 LGKRVIGQKTAVRAVANAVR-RAR-----AGLNDENRPLGSFLFLGPTGVGKTELTKAVA 628 Query: 75 RLA---GAPFIKVEVTKFTEIGYVGR 97 + +++++++F E V R Sbjct: 629 EYLFDDDSAMVRIDMSEFMEKHAVSR 654 >gi|328914941|gb|AEB55774.1| cell division protein FtsH [Chlamydophila psittaci 6BC] Length = 907 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +PK +LL+GP G GKT I++ ++ A PF + + F E+ +VG + IRD+ + A Sbjct: 452 IPKGVLLIGPPGTGKTLIAKAVSGEADRPFFSIAGSDFVEM-FVGVGASR-IRDMFEQA 508 >gi|311265757|ref|XP_003130808.1| PREDICTED: ATP-dependent metalloprotease YME1L1-like [Sus scrofa] Length = 739 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 +PK ILLVGP G GKT ++R +A A PF ++F E+ +VG +I Sbjct: 337 LPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEM-FVGVGASRI 386 >gi|306430671|emb|CBJ17082.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] gi|306430673|emb|CBJ17083.1| membrane-associated ATP-dependant Zn protease [Candidatus Phytoplasma mali] Length = 174 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 60 IPRGVLLEGPPGTGKTLLAKALAGEANVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 118 Query: 112 N 112 N Sbjct: 119 N 119 >gi|296120341|ref|YP_003628119.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] gi|296012681|gb|ADG65920.1| ATP-dependent metalloprotease FtsH [Planctomyces limnophilus DSM 3776] Length = 714 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +LLVGP G GKT +++ +A AG PF + + F E+ +VG + +RD+ A Sbjct: 255 IPRGVLLVGPPGTGKTLLAKAVAGEAGVPFYGLSGSDFVEM-FVGVGAAR-VRDMFQQA 311 >gi|225849953|ref|YP_002730187.1| cell division protease FtsH [Persephonella marina EX-H1] gi|225645469|gb|ACO03655.1| cell division protease FtsH [Persephonella marina EX-H1] Length = 627 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 PK ILL G GVGKT +++ +A A PFI + + F E+ +VG + +RDL + A Sbjct: 186 PKGILLYGDPGVGKTLLAKAIAGEANVPFISISGSDFVEM-FVGVGAAR-VRDLFETA 241 >gi|254502453|ref|ZP_05114604.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia alexandrii DFL-11] gi|222438524|gb|EEE45203.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Labrenzia alexandrii DFL-11] Length = 799 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 18/112 (16%) Query: 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 +L R + GQ +A +A A++ A LR+ P + L GPTGVGKT ++R+L Sbjct: 451 DLKRVVYGQDNAIETLASAIKLAR------AGLREPDKPIGSYLFSGPTGVGKTEVARQL 504 Query: 74 ARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIV 114 A G I+ +++++ E GYVG + ++ D VD + V Sbjct: 505 ASSMGVELIRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDGVDQHPHCV 556 >gi|221481384|gb|EEE19774.1| ClpB protein, putative [Toxoplasma gondii GT1] gi|221502016|gb|EEE27766.1| ClpB protein, putative [Toxoplasma gondii VEG] Length = 970 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 12/87 (13%) Query: 16 LDRYIIGQQDAKRAVAIAL-RNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRL 73 L +IGQ DA +AVA A+ R R A L E MP + L +GPTGVGKT +++ L Sbjct: 583 LHSRVIGQDDAVKAVADAMVRAR-------AGLSREGMPVGSFLFLGPTGVGKTELAKAL 635 Query: 74 AR---LAGAPFIKVEVTKFTEIGYVGR 97 A + I++++++F+E V R Sbjct: 636 AMEMFHSEKNLIRIDMSEFSEAHSVSR 662 >gi|218190620|gb|EEC73047.1| hypothetical protein OsI_06998 [Oryza sativa Indica Group] gi|222622734|gb|EEE56866.1| hypothetical protein OsJ_06499 [Oryza sativa Japonica Group] Length = 442 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%) Query: 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 I +Q+ + AV + L + +Q+ D P+ +LL GP G GKT +++ +A A Sbjct: 173 IQKQEIREAVELPLTHHELYKQIGID-----PPRGVLLYGPPGTGKTMLAKAVAHHTTAA 227 Query: 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 FI+V ++F + Y+G +++RD+ +A Sbjct: 228 FIRVVGSEFVQ-KYLGEG-PRMVRDVFRLA 255 >gi|194246849|ref|YP_002004490.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] gi|310943105|sp|B3R0R7|FTSH3_PHYMT RecName: Full=ATP-dependent zinc metalloprotease FtsH 3 gi|193807208|emb|CAP18651.1| ATP-dependent Zn protease [Candidatus Phytoplasma mali] Length = 599 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P+ +LL GP G GKT +++ LA A PF V ++F E+ YVG ++ + + + Sbjct: 206 IPRGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEM-YVGVGASRVRKLFKEAKL 264 Query: 112 N 112 N Sbjct: 265 N 265 >gi|190344740|gb|EDK36481.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 807 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA 110 +P+ +L GP G GKT +++ A AG PF+ V ++F E+ +VG + +RDL A Sbjct: 344 IPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEM