RPSBLAST alignment for GI: 254780829 and conserved domain: TIGR00390
>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441
Score = 512 bits (1319), Expect = e-146
Identities = 224/441 (50%), Positives = 318/441 (72%), Gaps = 12/441 (2%)
Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
+PREIV+ELD+YIIGQ +AK++VAIALRNR+RR QL +L+DE+ PKNIL++GPTGVGKT
Sbjct: 2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKT 61
Query: 68 AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
I+RRLA+LA APFIKVE TKFTE+GYVGR+VE ++RDL D A+ +V+E ++VR++A
Sbjct: 62 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAE 121
Query: 128 INAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
AEERI+D L+ + + RE FRKKLR+GE+ DKEI+I+V+
Sbjct: 122 ELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSG 181
Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
P G + L LF + G +KKK ++ ++ L+ +E+ +L+D + + ++
Sbjct: 182 IEIMAPPGMEEMTMQLQSLFQNLGGQ-KKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQE 240
Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
+I VE GI+F+DE DKI + +G VSREGVQRDLLP+VEGS+V+TKYG + TDHI
Sbjct: 241 AIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHI 300
Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
LFIA+GAF +++P+DL+PE+QGRFP+RV L++L DF ILT+ +++LI QYK LMKTE
Sbjct: 301 LFIAAGAFQLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTE 360
Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
G+ ++F++++I +A++A N+N +IGARRL TV+ER+LEDISF A DL + + IDA
Sbjct: 361 GVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDA 420
Query: 417 EYVRLHIGDFPSETDMYHFIL 437
+YV +G ++ D+ FIL
Sbjct: 421 DYVSKKLGALVADEDLSRFIL 441