RPSBLAST alignment for GI: 254780829 and conserved domain: TIGR01243

>gnl|CDD|162267 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 53  PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE----VTKFTEIGYVGRNVEQIIRDLVD 108
           PK +LL GP G GKT +++ +A  AGA FI +     ++K+   G     + +I ++  +
Sbjct: 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY--YGESEERLREIFKEAEE 269

Query: 109 VAINIVRESRRDEV---REQASINAEERI-------LDALVGK-----TATSNTREVFRK 153
            A +I+     D +   RE+ +   E+R+       +D L G+        +N  +    
Sbjct: 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329

Query: 154 KLRDGEISDKEIDIEVAD 171
            LR     D+EI I V D
Sbjct: 330 ALRRPGRFDREIVIRVPD 347