HHsearch alignment for GI: 254780831 and conserved domain: CHL00175

Probab=100.00  E-value=0  Score=359.05  Aligned_cols=237  Identities=23%  Similarity=0.375  Sum_probs=193.2

Q ss_pred             CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------C-----CCCC
Q ss_conf             2234654201024466654257899998987235775069882246787653100024563112------3-----3445
Q gi|254780831|r   89 RNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------D-----KKFL  157 (341)
Q Consensus        89 ~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~-----~~~i  157 (341)
T Consensus         7 ~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i   86 (279)
T CHL00175          7 TIVATMTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALI   86 (279)
T ss_pred             HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE
T ss_conf             12259886999974899844899999999999978998899957899998753268666666747664078766430134


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf             76632230322333435522100013420247899986752137775899745564442100000002234026742144
Q gi|254780831|r  158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQ  237 (341)
Q Consensus       158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~  237 (341)
T Consensus        87 ~~~~~~~l~ll~~~-------~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~a--l~aad~viIvttpe  157 (279)
T CHL00175         87 RDKRWPNLSLLPIS-------KNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDVGFINA--IAPAKEAIVVTTPE  157 (279)
T ss_pred             ECCCCCCEEEEECC-------CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHCCEEEEECCCC
T ss_conf             25777877999789-------7054457419999999999972799999981899888999999--99789069978997


Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf             31134566677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r  238 DLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV  317 (341)
Q Consensus       238 ~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v  317 (341)
T Consensus       158 ~~al~da~~~i~~~~~~~~~~~~lvvN~~---~~~~~~~~~~~~---~~~~~~~l~v~~lg~IP~D~~v~~a~~~G~Pvv  231 (279)
T CHL00175        158 ITAIRDADRVAGLLEANGIYNIKLLVNRV---RPDMIKANDMMS---VRDVQEMLGIPLLGAIPEDENVIISTNRGEPLV  231 (279)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEECCC---CCCCCCCCCCCC---HHHHHHHHCCCEEEECCCCHHHHHCCCCCEEEE
T ss_conf             89999999999999975998621353356---455435455344---999999719934657678778986130690589


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             97799989999999999999983
Q gi|254780831|r  318 VHNMNSATSEIYQEISDRIQQFF  340 (341)
Q Consensus       318 ~~~p~s~~a~~~~~iA~~i~~~l  340 (341)
T Consensus       232 ~~~P~S~~a~a~~~iA~~l~~~~  254 (279)
T CHL00175        232 LKKKLTLSGIAFENAARRLVGKQ  254 (279)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCC
T ss_conf             84999999999999999995787