HHsearch alignment for GI: 254780831 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.21 E-value=1.2e-05 Score=57.62 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECC----CEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 202899999872033847976436358----7655698899899999966878478999999999998606763423550
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQ----RLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVT 78 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lG----lI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~ 78 (341)
T Consensus 21 ~i~E~~i~e~~reir~ALLeADV-nl~vVk~fi~~ike--ra~--g~ev-~~~l~p~q~~iKiV~eELv~llG~~~~~l~ 94 (451)
T COG0541 21 RITEKDVKEALREIRRALLEADV-NLKVVKDFIKRIKE--RAL--GEEV-PKGLTPGQQFIKIVYEELVKLLGGENSELN 94 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--HHC--CCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 67799999999999999996444-68999999999999--861--4667-888998999999999999998488876650
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCEECCCCCCCCCCCCCC
Q ss_conf 3222343332223465420102446665425789999898723577506988224678765-310002456311233445
Q gi|254780831|r 79 LTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI-PKLLKISGKVEISDKKFL 157 (341)
Q Consensus 79 lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~-~~~lg~~~~~~~~~~~~i 157 (341)
T Consensus 95 l~--~~~P---------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q--------- 153 (451)
T COG0541 95 LA--KKPP---------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ--------- 153 (451)
T ss_pred CC--CCCC---------EEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH---------
T ss_conf 37--8998---------589998-15679748689999999997499458985056786899999999986---------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCCC-----HHHHCCCCCCEE
Q ss_conf 7663223032233343552210001342024789998675213777589974556444-2100-----000002234026
Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG-DAHL-----TIAQKIPLSGVV 231 (341)
Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g-d~~l-----sl~~~~~~~~~i 231 (341)
T Consensus 154 -----~~v~~f~~---~~~~~Pv~----Iak~al~~ak~~----~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 154 -----VGVPFFGS---GTEKDPVE----IAKAALEKAKEE----GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL 217 (451)
T ss_pred -----CCCCEECC---CCCCCHHH----HHHHHHHHHHHC----CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf -----09853167---78899799----999999999974----998899968873303099999999998553987489
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC-CHHHHHHHHHCCCE
Q ss_conf 742144311345666777640012211445544202458778866512477-65899999847978
Q gi|254780831|r 232 IVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGN-GGARFEAEKIGIPF 296 (341)
Q Consensus 232 iVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~-~~~~~~a~~~~i~~ 296 (341)
T Consensus 218 lVvD--am~GQdA~~~A~aF~e-~l~itGvIlTK------lDGd-----aRGGaALS~~~~tg~PI 269 (451)
T COG0541 218 LVVD--AMIGQDAVNTAKAFNE-ALGITGVILTK------LDGD-----ARGGAALSARAITGKPI 269 (451)
T ss_pred EEEE--CCCCHHHHHHHHHHHH-HCCCCEEEEEC------CCCC-----CCCHHHHHHHHHHCCCE
T ss_conf 9876--4445678999999866-26986499971------4678-----76228885699878985