HHsearch alignment for GI: 254780831 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.49 E-value=0.00033 Score=48.04 Aligned_cols=162 Identities=23% Similarity=0.312 Sum_probs=86.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876531000245631123344576632230322333435
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLV 174 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~ 174 (341)
T Consensus 139 p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~-------------~w~er~gv~vI~~~--~ 202 (340)
T COG0552 139 PFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE-------------VWGERLGVPVISGK--E 202 (340)
T ss_pred CEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------------HHHHHHCCEEECCC--C
T ss_conf 6799999-348886371799999999978986999823347899999999-------------99999599278259--9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CHHHHCC--------C-----CCCEEEEECCCCC
Q ss_conf 52210001342024789998675213777589974556444210--0000002--------2-----3402674214431
Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH--LTIAQKI--------P-----LSGVVIVSTPQDL 239 (341)
Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~--lsl~~~~--------~-----~~~~iiVttP~~~ 239 (341)
T Consensus 203 G~DpAa-----VafDAi~~A----kar~~DvvliDTA---GRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl--DAt 268 (340)
T COG0552 203 GADPAA-----VAFDAIQAA----KARGIDVVLIDTA---GRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL--DAT 268 (340)
T ss_pred CCCCHH-----HHHHHHHHH----HHCCCCEEEEECC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE--ECC
T ss_conf 998089-----999999999----9769999999675---54457366899999999984645689984289997--756
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf 1345666777640012211445544202458778866512477658999998479789
Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL 297 (341)
Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l 297 (341)
T Consensus 269 tGqnal~QAk~F~e-av~l~GiIlTK----lDgtAK------GG~il~I~~~l~~PI~ 315 (340)
T COG0552 269 TGQNALSQAKIFNE-AVGLDGIILTK----LDGTAK------GGIILSIAYELGIPIK 315 (340)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEEE----CCCCCC------CCEEEEHHHHHCCCEE
T ss_conf 47568999999987-52886699970----246777------6243508888699979