HHsearch alignment for GI: 254780831 and conserved domain: COG1348
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=99.87 E-value=2.1e-21 Score=162.59 Aligned_cols=224 Identities=26% Similarity=0.309 Sum_probs=155.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----C---CC-----CCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233----4---45-----766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----K---FL-----KPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~---~i-----~p~~~~ 163 (341)
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC
T ss_conf 379996-2787673126778999999729817997479876327777478666569999986186445887782120678
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CC-CCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECC
Q ss_conf 30322333435522100013420247899986752-13-77758997455644421000000022-----3402674214
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VW-GQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTP 236 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w-~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP 236 (341)
T Consensus 81 gv~CVEsG-GPepGvGCAGRGVi--tai-~~Le~lgaf~~~~DvviyDV---LGDVVCGG-FAmPiReg~AdeiyIVtSg 152 (278)
T COG1348 81 GVKCVESG-GPEPGVGCAGRGVI--TAI-NLLEELGAFEEDLDVVIYDV---LGDVVCGG-FAMPIREGYADEIYIVTSG 152 (278)
T ss_pred CEEEEECC-CCCCCCCCCCCHHH--HHH-HHHHHHCCCCCCCCEEEEEC---CCCEEECC-EEEEHHCCCCCEEEEEECC
T ss_conf 53774259-98999884651199--999-99998187301287899953---57734746-0002002666379999568
Q ss_pred CCCHHHHH---HHHHH-HHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCC
Q ss_conf 43113456---66777-640012211445544202458778866512477658999998479789882799899975028
Q gi|254780831|r 237 QDLALIDV---KRAIS-MYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDL 312 (341)
Q Consensus 237 ~~~s~~da---~r~~~-~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~ 312 (341)
T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~rLgGiIcN----------sR~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~ 222 (278)
T COG1348 153 EMMALYAANNIAKGIRKYAKTGGVRLGGIICN----------SRSVDRERELVEAFAERLGTQLIHFVPRDNIVQKAELN 222 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC----------CCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHC
T ss_conf 35899998899999999873379631457745----------77764379999999998488527633512788999874
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 82179977999899999999999999
Q gi|254780831|r 313 GIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 313 g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
T Consensus 223 ~kTvie~~P~s~~a~~yr~LA~~I~~ 248 (278)
T COG1348 223 GKTVIEYAPDSNQAEEYRELAKKILE 248 (278)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86611318462489999999999983