HHsearch alignment for GI: 254780831 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.03 E-value=4.3e-05 Score=53.95 Aligned_cols=168 Identities=23% Similarity=0.364 Sum_probs=85.8
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC-CC-EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 542010244666542578999989872357-75-0698822467876531000245631123344576632230322333
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK-GK-NVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~-~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341)
T Consensus 209 ~~~vvalV-GPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA-----~e-QLk~--Ya~il-----gvp~~--- 271 (412)
T PRK05703 209 QGGVVALV-GPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGA-----VE-QLKT--YAKIM-----GIPVK--- 271 (412)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----HH-HHHH--HHHHC-----CCEEE---
T ss_conf 67369998-888875676999999999997299817999837677779-----99-9999--99971-----97379---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-C---C-HHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 43552210001342024789998675213777589974556444--21-0---0-0000022340267421443113456
Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-H---L-TIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~---l-sl~~~~~~~~~iiVttP~~~s~~da 244 (341)
T Consensus 272 -v~~~--~~-----~l~~al~~----~--~~~dlILIDTa-G~s~~d~~~~~eL~~~~~~~~~~~~~LVlsa-t~~~~dl 335 (412)
T PRK05703 272 -VAYD--PK-----ELAKALEQ----L--ANCDLILIDTA-GRSQRDPRLISELKALIENSKPIDVYLVLSA-TTKYRDL 335 (412)
T ss_pred -EECC--HH-----HHHHHHHH----H--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHH
T ss_conf -8479--99-----99999987----1--58997999689-8897899999999999862488718999759-8998999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHH
Q ss_conf 6677764001221144554420245877886651247765899999847978988-----2799899
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDV 306 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i 306 (341)
T Consensus 336 ~~i~~~f~~~~~~--~lI~-------TKlDEt~~---~G~il~~~~~~~lplsy~t~GQ~VPeDi~~ 390 (412)
T PRK05703 336 KDIVKHFSRLPLD--GLIL-------TKLDETSS---LGSILSLLIESGLPISYLTDGQRVPDDIKV 390 (412)
T ss_pred HHHHHHHCCCCCC--EEEE-------EEECCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf 9999984679998--7999-------71128998---629999999988796999469997243422