HHsearch alignment for GI: 254780831 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.94 E-value=9.8e-05 Score=51.54 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCC-CC-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 4201024466654257899998987235-77-506988224678765310002456311233445766322303223334
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKN-KG-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~-~G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341)
T Consensus 176 ggV~alV-GPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIg-----AvE-QLktY--a~Il-----gvPv~---- 237 (404)
T PRK06995 176 GGVFALV-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG-----GHE-QLRIY--GKIL-----GVPVH---- 237 (404)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-----HHH-HHHHH--HHHC-----CCEEE----
T ss_conf 7558986-68887637589999999999838983799976875478-----999-99999--9875-----95599----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHH
Q ss_conf 3552210001342024789998675213777589974556444--210----0000002-23402674214431134566
Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVK 245 (341)
Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~ 245 (341)
T Consensus 238 vv~~~~-------eL~~aL~~l------~~~dlILIDTa-Grs~rD~~~~e~l~~l~~~~~~~~~~LVLsa-t~~~~dl~ 302 (404)
T PRK06995 238 AVKDAA-------DLRLALAEL------RNKHIVLIDTV-GMSQRDRMVSEQIAMLHGAGAPVQRLLLLNA-TSHGDTLN 302 (404)
T ss_pred EECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHH
T ss_conf 959999-------999999970------89999998099-9897688899999999735788528999779-89999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH
Q ss_conf 677764001221144554420245877886651247765899999847978988-----27998999
Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341)
Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341)
T Consensus 303 ~i~~~f~~~~~--~~~I~-------TKLDEt~~---~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A 357 (404)
T PRK06995 303 EVVQAYRGPGL--AGCIL-------TKLDEAAS---LGGALDTVIRHKLPLHYVSNGQRVPEDLHVA 357 (404)
T ss_pred HHHHHHCCCCC--CEEEE-------ECCCCCCC---HHHHHHHHHHHCCCEEEECCCCCCCCCHHCC
T ss_conf 99998446999--83998-------30406797---2399999999789859981899584212108