HHsearch alignment for GI: 254780831 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.00  E-value=7.4e-05  Score=52.34  Aligned_cols=167  Identities=19%  Similarity=0.281  Sum_probs=85.9

Q ss_pred             CCCEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             420102446665425789999898723----5775069882246787653100024563112334457663223032233
Q gi|254780831|r   95 KKFVAVASGKGGVGKSTTVVNIACALK----NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSM  170 (341)
Q Consensus        95 ~~iiav~SgKGGVGKSt~s~nLa~ala----~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~  170 (341)
T Consensus       174 ~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya-~--il-----~vp~~v-  238 (388)
T PRK12723        174 KRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYG-D--IM-----GIPVKA-  238 (388)
T ss_pred             CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHH-H--HH-----CCCEEE-
T ss_conf             6289998-998875787999999999986267677379998078758899999-----9999-9--97-----880698-


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCC-CEEEEECCCCCHHH
Q ss_conf             343552210001342024789998675213777589974556444--21-00----000002234-02674214431134
Q gi|254780831|r  171 ASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLS-GVVIVSTPQDLALI  242 (341)
Q Consensus       171 g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~-~~iiVttP~~~s~~  242 (341)
T Consensus       239 ---~~~~~-------dl~~~l~~------~~~~D~IlIDTA-Grs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa-t~~~~  300 (388)
T PRK12723        239 ---IESFK-------DLKEEITQ------SKDFDLVLIDTI-GKSPKDFMKLAEMKELLNACGRDAEFHLAVSS-TTKTS  300 (388)
T ss_pred             ---ECCHH-------HHHHHHHH------HCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCHH
T ss_conf             ---57889-------99999997------249999999589-98856899999999999741898459999879-89999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHH
Q ss_conf             5666777640012211445544202458778866512477658999998479789----88-2799899
Q gi|254780831|r  243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDV  306 (341)
Q Consensus       243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i  306 (341)
T Consensus       301 d~~~i~~~f~~~~~--~~~I~T-------KlDEt~~---~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~  357 (388)
T PRK12723        301 DIKEIFHQFSPFSY--KTVIFT-------KLDETTC---VGNLISLIHEMRKEVSYVTDGQIVPHNISI  357 (388)
T ss_pred             HHHHHHHHHCCCCC--CEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf             99999998427999--849998-------3227898---669999999988886999389968302033