HHsearch alignment for GI: 254780831 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.00 E-value=7.4e-05 Score=52.34 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=85.9
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 420102446665425789999898723----5775069882246787653100024563112334457663223032233
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK----NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSM 170 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala----~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~ 170 (341)
T Consensus 174 ~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya-~--il-----~vp~~v- 238 (388)
T PRK12723 174 KRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYG-D--IM-----GIPVKA- 238 (388)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHH-H--HH-----CCCEEE-
T ss_conf 6289998-998875787999999999986267677379998078758899999-----9999-9--97-----880698-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCC-CEEEEECCCCCHHH
Q ss_conf 343552210001342024789998675213777589974556444--21-00----000002234-02674214431134
Q gi|254780831|r 171 ASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLS-GVVIVSTPQDLALI 242 (341)
Q Consensus 171 g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~-~~iiVttP~~~s~~ 242 (341)
T Consensus 239 ---~~~~~-------dl~~~l~~------~~~~D~IlIDTA-Grs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa-t~~~~ 300 (388)
T PRK12723 239 ---IESFK-------DLKEEITQ------SKDFDLVLIDTI-GKSPKDFMKLAEMKELLNACGRDAEFHLAVSS-TTKTS 300 (388)
T ss_pred ---ECCHH-------HHHHHHHH------HCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCHH
T ss_conf ---57889-------99999997------249999999589-98856899999999999741898459999879-89999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHH
Q ss_conf 5666777640012211445544202458778866512477658999998479789----88-2799899
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDV 306 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i 306 (341)
T Consensus 301 d~~~i~~~f~~~~~--~~~I~T-------KlDEt~~---~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~ 357 (388)
T PRK12723 301 DIKEIFHQFSPFSY--KTVIFT-------KLDETTC---VGNLISLIHEMRKEVSYVTDGQIVPHNISI 357 (388)
T ss_pred HHHHHHHHHCCCCC--CEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 99999998427999--849998-------3227898---669999999988886999389968302033