HHsearch alignment for GI: 254780831 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.69 E-value=0.0017 Score=43.20 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=86.1
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECC
Q ss_conf 65420102446665425789999898723-577506988224678765310002456311233445--766322303223
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMS 169 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s 169 (341)
T Consensus 221 ~~~kvi~lV-GPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgA-----vE-QLktY--a~Il~iPv-----~vv~ 286 (432)
T PRK12724 221 NQRKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-----IE-QLKRY--ADTMGMPF-----YPVK 286 (432)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-----HH-HHHHH--HHHHCCCE-----EEEE
T ss_conf 776299998-99998889999999999999749927999526653779-----99-99999--99859945-----9951
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--C-CCCH----HHHCCC---CCCEEEEECCCCC
Q ss_conf 3343552210001342024789998675213777589974556444--2-1000----000022---3402674214431
Q gi|254780831|r 170 MASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--D-AHLT----IAQKIP---LSGVVIVSTPQDL 239 (341)
Q Consensus 170 ~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d-~~ls----l~~~~~---~~~~iiVttP~~~ 239 (341)
T Consensus 287 -----~~------------~el~~al~~---~~~DlILIDTA-GrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSa-Tt 344 (432)
T PRK12724 287 -----DI------------KKFKETLAR---DGSELILIDTA-GYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSS-TS 344 (432)
T ss_pred -----CH------------HHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CC
T ss_conf -----89------------999999985---69999999299-9897899999999999986366788517999978-89
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHHH
Q ss_conf 1345666777640012211445544202458778866512477658999998479789----88-27998999
Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDVR 307 (341)
Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i~ 307 (341)
T Consensus 345 k~~dl~~ii~~f~~l~~--~~lIfT-------KLDET~---s~G~ilni~~~~~~PisYiT~GQ~VPdDI~~A 405 (432)
T PRK12724 345 SYHHTLTVLKAYESLNY--RRILLT-------KLDEAD---FLGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred CHHHHHHHHHHHCCCCC--CEEEEE-------ECCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHC
T ss_conf 98999999998426999--849997-------122779---86699999999889869980899797173335