HHsearch alignment for GI: 254780831 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.24 E-value=0.00031 Score=48.19 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=88.9
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 46542010244666542578999989872357750698822467876531000245631123344576632230322333
Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341)
Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341)
T Consensus 203 l~~g~VIaLV-GvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~-------------g~rlgVpV~~-- 266 (407)
T PRK12726 203 LSNHRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY-------------ADKLDVELIV-- 266 (407)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-------------HHHHCCEEEE--
T ss_conf 0369089998-99989789999999999997799179997066778899999999-------------9997964998--
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-CH----HHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 43552210001342024789998675213777589974556444--210-00----000022340267421443113456
Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-LT----IAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-ls----l~~~~~~~~~iiVttP~~~s~~da 244 (341)
T Consensus 267 ---~~dpa~------l~~av~~~-a~--~~~~DvVIIDTA-GRl~~d~~Lm~EL~ki~~vi~P~~~lLV~da-g~~~~~v 332 (407)
T PRK12726 267 ---ATSPAE------LEEAVQYM-TY--VNCVDHILIDTV-GRNYLAEESVSEISAYTDVVHPDLTCFTFSS-GMKSADV 332 (407)
T ss_pred ---ECCHHH------HHHHHHHH-HH--CCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHH
T ss_conf ---188899------99999999-86--289998999699-9881349999999998733289669999367-5669999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE--EE---CCCCH
Q ss_conf 66777640012211445544202458778866512477658999998479789--88---27998
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL--ES---VPFDM 304 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l--g~---IP~d~ 304 (341)
T Consensus 333 ~qa~~~~~--~v~ItGiILTK-------LDgtA---KGG~aLSi~~~~~lPI~fIG~GEkIPEDi 385 (407)
T PRK12726 333 MTILPKLA--EIPIDGFIITK-------MDETT---RIGDLYTVMQETNLPVLYMTDGQNITENI 385 (407)
T ss_pred HHHHHHHC--CCCCCEEEEEE-------CCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 99998704--79998799970-------14789---85399999999888979994799997012