HHsearch alignment for GI: 254780831 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.24  E-value=0.00031  Score=48.19  Aligned_cols=171  Identities=18%  Similarity=0.307  Sum_probs=88.9

Q ss_pred             CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             46542010244666542578999989872357750698822467876531000245631123344576632230322333
Q gi|254780831|r   92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA  171 (341)
Q Consensus        92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g  171 (341)
T Consensus       203 l~~g~VIaLV-GvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~-------------g~rlgVpV~~--  266 (407)
T PRK12726        203 LSNHRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY-------------ADKLDVELIV--  266 (407)
T ss_pred             ECCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-------------HHHHCCEEEE--
T ss_conf             0369089998-99989789999999999997799179997066778899999999-------------9997964998--


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-CH----HHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf             43552210001342024789998675213777589974556444--210-00----000022340267421443113456
Q gi|254780831|r  172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-LT----IAQKIPLSGVVIVSTPQDLALIDV  244 (341)
Q Consensus       172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-ls----l~~~~~~~~~iiVttP~~~s~~da  244 (341)
T Consensus       267 ---~~dpa~------l~~av~~~-a~--~~~~DvVIIDTA-GRl~~d~~Lm~EL~ki~~vi~P~~~lLV~da-g~~~~~v  332 (407)
T PRK12726        267 ---ATSPAE------LEEAVQYM-TY--VNCVDHILIDTV-GRNYLAEESVSEISAYTDVVHPDLTCFTFSS-GMKSADV  332 (407)
T ss_pred             ---ECCHHH------HHHHHHHH-HH--CCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHH
T ss_conf             ---188899------99999999-86--289998999699-9881349999999998733289669999367-5669999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE--EE---CCCCH
Q ss_conf             66777640012211445544202458778866512477658999998479789--88---27998
Q gi|254780831|r  245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL--ES---VPFDM  304 (341)
Q Consensus       245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l--g~---IP~d~  304 (341)
T Consensus       333 ~qa~~~~~--~v~ItGiILTK-------LDgtA---KGG~aLSi~~~~~lPI~fIG~GEkIPEDi  385 (407)
T PRK12726        333 MTILPKLA--EIPIDGFIITK-------MDETT---RIGDLYTVMQETNLPVLYMTDGQNITENI  385 (407)
T ss_pred             HHHHHHHC--CCCCCEEEEEE-------CCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             99998704--79998799970-------14789---85399999999888979994799997012