HHsearch alignment for GI: 254780831 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.69 E-value=0.00025 Score=48.78 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-C-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 2010244666542578999989872357-7-5069882246787653100024563112334457663223032233343
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-G-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341)
T Consensus 349 Gv~Alv-GpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRig------a~eQL~~y--~~il-----gvpv~----~ 410 (557)
T PRK12727 349 GVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG------GREQLHSY--GRQL-----GIAVH----E 410 (557)
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH------HHHHHHHH--HHHH-----CCEEE----E
T ss_conf 647874-37776731179999999999739981899972664087------99999999--9983-----97579----8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHHH
Q ss_conf 552210001342024789998675213777589974556444--210----0000002-234026742144311345666
Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~r 246 (341)
T Consensus 411 ~~~~~-------~l~~~l~~l------~~~~lvliDTa-G~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~--~~~~~l~~ 474 (557)
T PRK12727 411 ADSAE-------SLLDLLERL------RDYKLVLIDTA-GMGQRDRALAAQLNWLRAARQVTSLLVLPAN--AHFSDLDE 474 (557)
T ss_pred ECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHH
T ss_conf 28999-------999999983------69998999499-9884699999999987514776359999688--99899999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH
Q ss_conf 77764001221144554420245877886651247765899999847978988-----27998999
Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341)
Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341)
T Consensus 475 ~~~~~~~~--~~~~~i~T-------KlDE~~~---~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a 528 (557)
T PRK12727 475 VVRRFAHA--KPQGVVLT-------KLDETGR---FGSALSVVVDHQMPITWVTDGQRVPDDLHRA 528 (557)
T ss_pred HHHHHCCC--CCCEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEECCCCCCCCCHHHC
T ss_conf 99985379--98748996-------1436787---0399999999689828975898285236438