HHsearch alignment for GI: 254780831 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=99.64 E-value=6.1e-16 Score=126.23 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=80.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W-~e~---a--~~~~~~~~~----~~v----~~~~ 67 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KEN---A--LRSNTWDPA----CEV----YAAD 67 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-HHH---H--HHCCCCCCC----CCE----EECC
T ss_conf 3799961899876999999999999978995999968998688999-987---6--525898877----523----4056
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341)
T Consensus 68 -~~~------~l~~~~e~----~~~~~~D~VIIDtpg~~s~~~~~Ai--~~ADLVLIP~qPSp~D~~~a~~tv~~i~~ 132 (231)
T PRK13849 68 -ELP------LLEAAYED----AELQGFDYALADTHGGSSELNNTII--ASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred -CHH------HHHHHHHH----HHHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -525------78999988----7536998899818997758999999--97898997799986679999999999999