HHsearch alignment for GI: 254780831 and conserved domain: TIGR00416
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=90.64 E-value=0.49 Score=26.91 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEE----ECCCCCCCCCCC------------------------CCC--C-CC-C
Q ss_conf 87847899999999999860676342355----032223433322------------------------234--6-54-2
Q gi|254780831|r 49 HTIAHQLQSLRSNAQQIIQNIPTVKNAVV----TLTENKNPPQQR------------------------NNL--N-VK-K 96 (341)
Q Consensus 49 ~~~cp~~~~l~~~i~~~l~~i~gv~~v~V----~lt~~~~~~~~~------------------------~~~--~-~~-~ 96 (341)
T Consensus 25 C~~C~aw~t~~E~~~~~vssGtn~~s~~a~~~~~~~~~~g~~~~~K~~~~s~I~~~e~~rf~s~~~ElDrVLGGGivpGs 104 (481)
T TIGR00416 25 CPACHAWNTLTEERLKKVSSGTNARSLKAQKNRRASLKAGVPQAQKAQTISAIELEEEPRFSSGFGELDRVLGGGIVPGS 104 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEECCCCCCCC
T ss_conf 88866531377787765302310001011245553115886521024123433420676053066410011067222441
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
T Consensus 105 liLiG-G~PG~GKSTLLLqV~~~LA~~~~~~LYVsGE 140 (481)
T TIGR00416 105 LILIG-GDPGIGKSTLLLQVACQLAKNSMKVLYVSGE 140 (481)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 69846-8899635678999999984048816899723