HHsearch alignment for GI: 254780831 and conserved domain: TIGR01969
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=100.00 E-value=0 Score=353.09 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=178.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----CCCCC---CCCCCC-EE
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----34457---663223-03
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----KKFLK---PKENYG-IK 166 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----~~~i~---p~~~~g-i~ 166 (341)
T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~GnV~ 80 (258)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEGNVK 80 (258)
T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEE
T ss_conf 98899977889861400000778898609768999467667768988446888967522134456100110028898447
Q ss_pred ECCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 22333435522-10001342024789998675213777589974556444210000000223402674214431134566
Q gi|254780831|r 167 IMSMASLVDEN-VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVK 245 (341)
Q Consensus 167 ~~s~g~l~~~~-~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~ 245 (341)
T Consensus 81 V~PagvSLEg~rKA~~-------~~L~dV~~~i~-~~~D~lLIDAPAGL~~~a~--~Al~~a~elLLVvNPEi~SItDaL 150 (258)
T TIGR01969 81 VIPAGVSLEGLRKADP-------DKLEDVLKEII-DDTDFLLIDAPAGLERDAV--TALAAADELLLVVNPEISSITDAL 150 (258)
T ss_pred EECCCCCHHHCCCCCH-------HHHHHHHHHHH-CCCCEEEEECCCCCCHHHH--HHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 8506122100012683-------33289999872-0437788747898337899--999861866486676544677788
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHH
Q ss_conf 67776400122114455442024587788665124776589999984797898827998999750288217997799989
Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSAT 325 (341)
Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~ 325 (341)
T Consensus 151 K~k~va~~lGt~ilG~vlNRv~------~~~tel-~~~eiE~i---LevPVl~~vPEDP~VR~AAa~G~P~V~~~P~SpA 220 (258)
T TIGR01969 151 KVKIVAEKLGTAILGVVLNRVT------RDKTEL-GREEIEAI---LEVPVLGVVPEDPEVRRAAAFGEPVVVYSPNSPA 220 (258)
T ss_pred HHHHHHHHCCCCEEEEEEEECC------CCCCCC-CHHHHHHH---HCCCEEEEECCCHHHHHHHHCCCCEEEECCCCHH
T ss_conf 9999987608832468996023------666637-88899988---4797389856984344564248536884799878
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780831|r 326 SEIYQEISDRIQQ 338 (341)
Q Consensus 326 a~~~~~iA~~i~~ 338 (341)
T Consensus 221 A~A~~eLA~~l~G 233 (258)
T TIGR01969 221 AQAFMELAAELAG 233 (258)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999718