HHsearch alignment for GI: 254780831 and conserved domain: TIGR03406
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.69 E-value=1.5e-16 Score=130.36 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-----CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 20289999987203384797643635876556988-----9989999996687847899999999999860676342355
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-----HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVV 77 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-----~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V 77 (341)
T Consensus 72 ~~~E~~vweaLk~V~DPEIpVnIVdLGLIY~v~i~~~~~~~~~V~I~MTLTapgCpmg~~i~~dv~~~v~~v~~v~~v~V 151 (174)
T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEV 151 (174)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 42099999998415598887544863025799987647889779999960479998317999999999977999664999
Q ss_pred ECCCCCCCCCCC
Q ss_conf 032223433322
Q gi|254780831|r 78 TLTENKNPPQQR 89 (341)
Q Consensus 78 ~lt~~~~~~~~~ 89 (341)
T Consensus 152 elV~dPpW~~dm 163 (174)
T TIGR03406 152 ELVFDPPWSREM 163 (174)
T ss_pred EEEECCCCCHHH
T ss_conf 999889989334