HHsearch alignment for GI: 254780831 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.81 E-value=0.028 Score=35.20 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=30.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 102446665425789999898723-5775069882246
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
T Consensus 15 L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89999689999999999999999997799599993335