HHsearch alignment for GI: 254780831 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=94.24  E-value=0.059  Score=33.04  Aligned_cols=37  Identities=30%  Similarity=0.537  Sum_probs=32.6

Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             20102446665425789999898723577506988224
Q gi|254780831|r   96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD  133 (341)
Q Consensus        96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD  133 (341)
T Consensus        20 ~it~i-~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE   56 (218)
T cd01394          20 TVTQV-YGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             79999-89999849999999999986369869999665