HHsearch alignment for GI: 254780831 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.57 E-value=1.2e-14 Score=117.62 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=71.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341)
T Consensus 2 ia~-~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp--~dlpe~~~~~~--------------~~~~~l~~lg~~~~~g 64 (116)
T cd02034 2 IAI-TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--------------GEIKLLLVMGMGRPGG 64 (116)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHCEEC--------------CCCCEEEEEECCCCCC
T ss_conf 789-889977499999999999997899699998989--71235542331--------------7870799997343589
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 100013420247899986752137775899745564442100000002234026742
Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVS 234 (341)
Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVt 234 (341)
T Consensus 65 ~GC~---C~~n~ll~~~l~~l~~~~~~~VvvD~eAGi--EHl~Rg~~~~vD~livVs 116 (116)
T cd02034 65 EGCY---CPENALLNALLRHLVLTRDEQVVVDTEAGL--EHLGRGTAEGVDLLVVVN 116 (116)
T ss_pred CCEE---CCHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHCCHHHCCCEEEEEC
T ss_conf 9408---825789999999970679989999678548--777300664399999969