HHsearch alignment for GI: 254780831 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.96 E-value=9.8e-30 Score=218.16 Aligned_cols=135 Identities=27% Similarity=0.459 Sum_probs=105.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~an~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------------------------------------
T ss_conf 98996499998399999999999997899699998989996579------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCC
Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776-40012
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISM-YQKMN 255 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~-~~~~~ 255 (341)
T Consensus 45 --------------------------~D~viiD~~aG~~~~~~~~~--~~ad~~lvV~tpeptSi~DAYalIK~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDFF--LAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf --------------------------99999948999877899999--95895799958970679999999999999639
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH---HCCCEEEECC
Q ss_conf 211445544202458778866512477658999998---4797898827
Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEK---IGIPFLESVP 301 (341)
Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~---~~i~~lg~IP 301 (341)
T Consensus 97 ~~~~~lvvN~v~----s~~ea~~~~~--~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 97 VLNFRVVVNRAE----SPKEGKKVFK--RLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred CCCEEEEEECCC----CHHHHHHHHH--HHHHHHHHHCCCCCCCCEECC
T ss_conf 997599995689----9999999999--999999998099831071485