HHsearch alignment for GI: 254780831 and conserved domain: cd02117
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.97 E-value=1.8e-31 Score=229.79 Aligned_cols=190 Identities=27% Similarity=0.291 Sum_probs=132.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CC---CCCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123---------34---45766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---------KK---FLKPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~---~i~p~~~~ 163 (341)
T Consensus 1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~ 79 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 959998-8983568778999999999869969999038998733031199778719999875278664456678996688
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCC
Q ss_conf 303223334355221000134202478999867--521377758997455644421000-00---002234026742144
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLH--NVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQ 237 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~--~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~ 237 (341)
T Consensus 80 gv~~veag-gp~~g~~~ag~~i--~~~~-~ll~~~~~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~E 152 (212)
T cd02117 80 GVKCVESG-GPEPGVGCAGRGV--ITAV-NLLEKEGFAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSGE 152 (212)
T ss_pred CEEEEECC-CCCCCCCCCCCHH--HHHH-HHHHHHHHHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 70899889-9776765454117--8899-99997410025799999965---8854035633432116688899980693
Q ss_pred CCHHHHH---HHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC
Q ss_conf 3113456---6677764001-2211445544202458778866512477658999998479789882799
Q gi|254780831|r 238 DLALIDV---KRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFD 303 (341)
Q Consensus 238 ~~s~~da---~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d 303 (341)
T Consensus 153 ~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~----------~~~~~i~~f~~~~g~~vl~~IP~d 212 (212)
T cd02117 153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC----------CHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 578898899999999997367981489998467888----------649999999998399189974899