HHsearch alignment for GI: 254780831 and conserved domain: cd03110
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=100.00 E-value=2.2e-39 Score=282.49 Aligned_cols=178 Identities=28% Similarity=0.350 Sum_probs=137.5
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341)
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g------ 71 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCG------ 71 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCC------
T ss_conf 89995899860999999999974----28719994189985777718765632122304653351506653235------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 10001342024789998675213777589974556444210000000223402674214431134566677764001221
Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIP 257 (341)
Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~ 257 (341)
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al--~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~ 145 (179)
T cd03110 72 ----LCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASL--TGADAALLVTEPTPSGLHDLERAVELVRHFGIP 145 (179)
T ss_pred ----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ----17688999999999986443799899818999757899999--739949998199478999999999999982997
Q ss_pred HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC
Q ss_conf 14455442024587788665124776589999984797898827
Q gi|254780831|r 258 IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341)
Q Consensus 258 i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341)
T Consensus 146 ~-gvV~Nr~~~-~~~--------~~~~i~~~~~~~~vp~LG~iP 179 (179)
T cd03110 146 V-GVVINKYDL-NDE--------IAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred E-EEEEECCCC-CCC--------CHHHHHHHHHHHCCCEEEECC
T ss_conf 8-999968878-876--------348999999980999898387