HHsearch alignment for GI: 254780831 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.71 E-value=1.3e-17 Score=137.27 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=85.5
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 010244666542578999989872357-7506988224678765310002456311233445766322303223334355
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22100013420247899986752137775899745564442100000002234026742144311345666777640012
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341)
T Consensus 44 ----------------------------d~VVvD~~~~~~~~~~~al--~~ad~i~lv~~~~lp~lrn~kr~l~~l~~l~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAAL--DQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEECCCCCCCHHHHHHH--HHCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf ----------------------------7899918655388999999--8679799980677489997999999999849
Q ss_pred CC---HHHHHHH
Q ss_conf 21---1445544
Q gi|254780831|r 256 IP---IIGMIEN 264 (341)
Q Consensus 256 ~~---i~GiV~N 264 (341)
T Consensus 94 ~~~~~ki~lVvN 105 (106)
T cd03111 94 YSLPAKIELVLN 105 (106)
T ss_pred CCCCCCEEEEEC
T ss_conf 997365699857