HHsearch alignment for GI: 254780831 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.96 E-value=7.9e-05 Score=52.15 Aligned_cols=130 Identities=26% Similarity=0.367 Sum_probs=72.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCC
Q ss_conf 010244666542578999989872357750698822467876-5310002456311233445766-32230322333435
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS-IPKLLKISGKVEISDKKFLKPK-ENYGIKIMSMASLV 174 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps-~~~~lg~~~~~~~~~~~~i~p~-~~~gi~~~s~g~l~ 174 (341)
T Consensus 1 viGit-G~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLG--------DRiRm~~~~~~~~vfiRs~at-- 69 (148)
T cd03114 1 VIGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILG--------DRIRMERHASDPGVFIRSLAT-- 69 (148)
T ss_pred CEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH--------HHHHHHHHCCCCCEEEEECCC--
T ss_conf 97625-8997878999999999999789837999968887866862032--------354534415799836863466--
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 52210001342--024789998675213777589974556444210000000223402674214431134566677
Q gi|254780831|r 175 DENVAMIWRGP--MVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 175 ~~~~~~~~rg~--~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
T Consensus 70 --------rg~~ggla~~~~~~i~~l~~~g~D~IiIETv-GvGQse~~i~~--~aD~~i~v~~p~~GD~iQ~~K~g 134 (148)
T cd03114 70 --------RGFLGGLSRATPEVIRVLDAAGFDVIIVETV-GVGQSEVDIAS--MADTTVVVMAPGAGDDIQAIKAG 134 (148)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHHH--HCCEEEEEECCCCCCHHHHCCCC
T ss_conf --------6654204688999999999759998999748-77756026554--35669999636887377611228