HHsearch alignment for GI: 254780831 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.11 E-value=5.7e-06 Score=59.75 Aligned_cols=171 Identities=21% Similarity=0.329 Sum_probs=86.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 2 ~vi~lv-GptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL-----~~y--------a~~l~v~~~~~~---~ 64 (196)
T pfam00448 2 NVILLV-GLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQL-----KQL--------AERLGVPVFGSG---T 64 (196)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHH--------HHHCCCEEEECC---C
T ss_conf 699998-99999889999999999997799289997587768899999-----999--------986398178148---7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 2210001342024789998675213777589974556444--2100-----00000223402674214431134566677
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
T Consensus 65 ~~d~--------~~~~~~~l~~~~~~~~D~IlIDTa-Gr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~-~~~~~~~~~~ 134 (196)
T pfam00448 65 GSDP--------AAVAFDAVEKAKAENYDVVLVDTA-GRLQNDKNLMDELKKIKRVIAPDEVLLVLDAT-TGQNALNQAK 134 (196)
T ss_pred CCCH--------HHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHH
T ss_conf 7787--------899999999988468999999899-98747677899999998522873028998567-7821378999
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 7640012211445544202458778866512477658999998479789882799899
Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341)
T Consensus 135 ~f~~~~~--~~~~I~T-------KlDet~~---~G~~l~~~~~~~~Pi~-~~t~Gq~v 179 (196)
T pfam00448 135 AFNEAVG--ITGVILT-------KLDGDAK---GGAALSIAAETGKPIK-FIGVGEKI 179 (196)
T ss_pred HHHHHCC--CCCEEEE-------EECCCCC---CCHHHHHHHHHCCCEE-EEECCCCH
T ss_conf 8760047--7626888-------4057887---5299989999896979-99679981