HHsearch alignment for GI: 254780831 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.97 E-value=3.4e-31 Score=227.92 Aligned_cols=194 Identities=23% Similarity=0.368 Sum_probs=131.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCC--------------CCCC-CCC
Q ss_conf 1024466654257899998987235775069882246787653100024563112334--------------4576-632
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK--------------FLKP-KEN 162 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~--------------~i~p-~~~ 162 (341)
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 23032233343552210001342024789998675213777589974556444210000000223402674214431134
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341)
T Consensus 81 ~~l~l~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--~~~al~~ad~vivv~~p~~~sl~ 150 (212)
T pfam01656 81 DPLLLIPSNLSLAN--------FESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--TANALVAADILVVPIEPEGVAVL 150 (212)
T ss_pred CCEEEECCCHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCEEEEEECCCHHHHH
T ss_conf 87465335015667--------777779999998766604998999479975599--99999839989999489769999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC---EEEECCCCHHHHH
Q ss_conf 56667776400122114455442024587788665124776589999984797---8988279989997
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP---FLESVPFDMDVRV 308 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~---~lg~IP~d~~i~~ 308 (341)
T Consensus 151 ~~~~l~~~~~~l~~~~~gvV~N~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~~ 212 (212)
T pfam01656 151 GAQRLLELVERLGLKILGVVLNKV-----DRGDERHL--DKEIEALERKTGIPVLLLLGVIPRDLALSE 212 (212)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCC-----CCCCHHHH--HHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 999999999985996229999148-----89983663--078999999978997514041168776687