BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780831|ref|YP_003065244.1| hypothetical protein
CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62]
(341 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACAL 120
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACAL
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACAL 120
Query: 121 KNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAM 180
KNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAM
Sbjct: 121 KNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAM 180
Query: 181 IWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA 240
IWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA
Sbjct: 181 IWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA 240
Query: 241 LIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESV 300
LIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESV
Sbjct: 241 LIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESV 300
Query: 301 PFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV 341
PFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV
Sbjct: 301 PFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV 341
>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 201 bits (510), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 201 bits (510), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
asiaticus str. psy62]
Length = 265
Score = 44.7 bits (104), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 21/118 (17%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK 155
+ + +A+ KGGVGK+TT +N++ AL G+NV ++D D G + L +E+ D+K
Sbjct: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-----GIELYDRK 61
Query: 156 FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213
+ +Y + I ++N+ I ++Q+AI ++ +++ +D L I+M G
Sbjct: 62 Y----SSYDLLIE------EKNINQI----LIQTAIPNL--SIIPSTMDLLGIEMILG 103
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 28.5 bits (62), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 92 LNVKKF-VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE 150
L K F V++ SG G GK+ + I A+ + GK V IL +P++ S +E
Sbjct: 213 LCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLIL--------LPEISLTSAILE 264
Query: 151 ISDKKF-LKPKENYGIKIMSMASLVDENVAMIWR 183
K+F +KP E + S+++ + E IWR
Sbjct: 265 RFQKRFGVKPAEWHS----SLSTSMREK---IWR 291
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 62 AQQIIQNIPTVKNAVVTLTENKNP 85
++++ + IP+++ VVT TEN P
Sbjct: 396 SEKVKKTIPSLRRIVVTCTENGYP 419
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 147 GKVEISDKKFLKPKENYGIKIMSMA 171
GKV+IS +K + K+N G+ IM A
Sbjct: 149 GKVDISRRKKVMYKQNIGLMIMPFA 173
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 147 GKVEISDKKFLKPKENYGIKIMSMA 171
GKV+IS +K + K+N G+ IM A
Sbjct: 149 GKVDISRRKKVMYKQNIGLMIMPFA 173
>gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 147 GKVEISDKKFLKPKENYGIKIMSMA 171
GKV+IS +K + K+N G+ IM A
Sbjct: 149 GKVDISRRKKVMYKQNIGLMIMPFA 173
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 147 GKVEISDKKFLKPKENYGIKIMSMA 171
GKV+IS +K + K+N G+ IM A
Sbjct: 149 GKVDISRRKKVMYKQNIGLMIMPFA 173
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 100 VASGKGGVGKSTTVVNIACALKNKGKNV 127
+ G G GKS T+ NI A GK +
Sbjct: 423 IIEGPPGTGKSQTITNIIAAAMLHGKKI 450
>537021.9.peg.472_1
Length = 369
Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136
SG G+GK+TT IA +L K ++ + + G
Sbjct: 27 SGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG 61
>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 426
Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 56 QSLRSNAQQIIQNIPT-VKNAVVTLT------------ENKNPPQQRNNLNVKKFVAVAS 102
+ +R NA+Q++ + + N+ V LT +++NP + + ++ V +
Sbjct: 84 EDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILH 143
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAIL 130
GG +TT ++ LK K N+ ++
Sbjct: 144 TIGGDDTNTTACDLLRYLKEKNYNITVV 171
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,822
Number of Sequences: 1233
Number of extensions: 9485
Number of successful extensions: 44
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 20
length of query: 341
length of database: 328,796
effective HSP length: 75
effective length of query: 266
effective length of database: 236,321
effective search space: 62861386
effective search space used: 62861386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)