HHsearch alignment for GI: 254780832 and conserved domain: COG0833
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism].
Probab=96.78 E-value=0.039 Score=31.90 Aligned_cols=345 Identities=20% Similarity=0.215 Sum_probs=161.8
Q ss_pred HHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 99989732304573676678999997147777777789934620488898999999999999988741078998138999
Q gi|254780832|r 16 FYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSL 95 (628)
Q Consensus 16 ~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL 95 (628)
T Consensus 49 RHl~MIAiG---G~IGTGLfvgsG~~l~~aGP~g-------~l---i~y~i~G~~vy~-vm~sLGEma~~~P-~sGsF~~ 113 (541)
T COG0833 49 RHLQMIAIG---GAIGTGLFVGSGKALSQAGPAG-------LL---IAYLIIGIMVYF-VMQSLGELAVFYP-VSGSFST 113 (541)
T ss_pred HHHHHHHHC---CCCCCCEEEECCHHHHCCCCHH-------HH---HHHHHHHHHHHH-HHHHHHHHHHHCC-CCCCHHH
T ss_conf 789998732---4220342563563653069599-------99---999999999999-9998877771267-8875434
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf 9999872675542577899999999965003469999999872466427366761289999999999975000189---9
Q gi|254780832|r 96 LALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTK---G 172 (628)
Q Consensus 96 ~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~---~ 172 (628)
T Consensus 114 ya~--r------fvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~i-F~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 114 YAT--R------FVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAI-FLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred HHH--H------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHCCCCCCH
T ss_conf 346--6------4583488898999999999996699998777432306899970799999-999999998723650010
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHH----HHHHHHHHHCCC
Q ss_conf 999845999999---99999999986501874444679689999998374--358999989999----851087874364
Q gi|254780832|r 173 VACFFSPIMVAW---LLMITVSGLIHISDDWGILAAFNPMYALHMVFGKG--TISLVVLGSVFL----TITGAEALYADL 243 (628)
Q Consensus 173 ~g~~F~pi~~lw---f~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~--~~g~~~lg~v~L----a~TG~EAl~adv 243 (628)
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~-------~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPT-------HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEECEEEEEEEE
T ss_conf 049999999999999999999995188998-------8876202214898777646889998854135640315144520
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHH----HHHHH-CCHH--------HHHHHHHHHCCC--CHHHHHHHHHHHH--H
Q ss_conf 546711--69999999999999999747----86873-5924--------552036872786--3289999999999--9
Q gi|254780832|r 244 GHFGRK--PIQYAWMVIFPALAINYLGQ----GALVL-SNPE--------AIKDPFYMMFGG--WFLPFAVLTATCA--T 304 (628)
Q Consensus 244 ghF~~~--~i~~aw~~v~~~L~l~y~Gq----~a~ll-~~~~--------~~~~~f~~~~p~--~~~~~~v~~at~a--~ 304 (628)
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 05578213457999999999999999999975477068980000477677267974375774598530578879999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHH
Q ss_conf 996030100258999999975998865687038876571100689999999988877732688----8988789999999
Q gi|254780832|r 305 VIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHS----ESLVAAYGISVSG 380 (628)
Q Consensus 305 iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s----~~L~~aYgi~V~~ 380 (628)
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~-f~~~~r~GvP~---~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i 413 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKI-FAKVDRRGVPL---VALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFI 413 (541)
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHH-HHHHCCCCCCH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 977302021888999999866997667-88608999734---78999999999999985347526999999987788999
Q ss_pred HH---HHHHHHHHHHHHH
Q ss_conf 99---9989999999998
Q gi|254780832|r 381 TM---VISTIMFSVFVHV 395 (628)
Q Consensus 381 tf---~lTt~l~~~~~~~ 395 (628)
T Consensus 414 ~W~~I~~shirFR~A~~~ 431 (541)
T COG0833 414 AWGSICLSHIRFRRAMKA 431 (541)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998