HHsearch alignment for GI: 254780832 and conserved domain: PRK10197
>PRK10197 gamma-aminobutyrate transporter; Provisional.
Probab=98.57 E-value=6.9e-05 Score=49.66 Aligned_cols=289 Identities=12% Similarity=0.044 Sum_probs=153.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88989999-99999999988741078998138999999987267554257789999999996500346999999987246
Q gi|254780832|r 62 VSLMIWVL-TIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGV 140 (628)
Q Consensus 62 lSli~Wtl-~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl 140 (628)
T Consensus 29 lay~i~Gi~~~~~~~~laEla~~~P~~--Gs~-~~y--a~~~~g~------~~GF~~GW~yw~~~~~~~~~e~~a~~~~~ 97 (446)
T PRK10197 29 LAYLFAGLLVVMIMRMLAEMAVATPDT--GSF-STY--ADKAIGR------WAGYTIGWLYWWFWVLVIPLEANIAAMIL 97 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCH-HHH--HHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999876999--868-999--9999194------99999999999999999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCCC-CCCCCHHHHHHHH
Q ss_conf 642736676128999999999997500018999998---4599999999999999986501-8744-4467968999999
Q gi|254780832|r 141 RYIAPELDNFIILIALGILVLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISD-DWGI-LAAFNPMYALHMV 215 (628)
Q Consensus 141 ~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~v-l~a~~P~~~~~~~ 215 (628)
T Consensus 98 ~~w~p~~p~~~--~~~~~~~~l~~lNl~~v~~~ge~e~~~s~iKv~~ii~fii~g~~~i~g~~p~~~~~g~~~~~~~g~f 175 (446)
T PRK10197 98 HSWVPGIPIWL--FSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGF 175 (446)
T ss_pred HHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 77326640799--9999999999999987899999999999999999999999999998078888887761224668887
Q ss_pred HHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHH-HHHHH-
Q ss_conf 83743589-99989999851087874364546711--6999999999999999974786873-----592455-20368-
Q gi|254780832|r 216 FGKGTISL-VVLGSVFLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQGALVL-----SNPEAI-KDPFY- 285 (628)
Q Consensus 216 ~~~~~~g~-~~lg~v~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~~~~-~~~f~- 285 (628)
T Consensus 176 ~p~G~~g~~~a~~~~~faf~G~E~i~~~AgE~knP~k~iPrAi~~~~~ri~ifYil~~~vi~~~vP~~~~~l~~~s~~~~ 255 (446)
T PRK10197 176 MPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRS 255 (446)
T ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 64357999999999999982799999999985183547999999999999999999999997744666644456682899
Q ss_pred ---HHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHH
Q ss_conf ---72786328999999999999960301002589999999759988656870388765711006899999999888777
Q gi|254780832|r 286 ---MMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVI 362 (628)
Q Consensus 286 ---~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl 362 (628)
T Consensus 256 ~~~~~gi~~~~~iin~vil~s~~Sa~Ns~iy~~SR~lyalA~~G~aPk~-f~k~nk~g---vP~~avl~s~~~~~l~~~~ 331 (446)
T PRK10197 256 VLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAV-MGKINRSK---TPYVAVLLSTGAAFLTVVV 331 (446)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf 9998586468999999999999999999999999999999808975689-87649999---9699999999999999999
Q ss_pred HCCCH
Q ss_conf 32688
Q gi|254780832|r 363 GFRHS 367 (628)
Q Consensus 363 ~f~~s 367 (628)
T Consensus 332 ~~~~~ 336 (446)
T PRK10197 332 NYYAP 336 (446)
T ss_pred HCCCH
T ss_conf 83277