HHsearch alignment for GI: 254780832 and conserved domain: PRK11049
>PRK11049 D-alanine/D-serine/glycine permease; Provisional.
Probab=99.28 E-value=1.5e-07 Score=66.98 Aligned_cols=298 Identities=15% Similarity=0.121 Sum_probs=152.1
Q ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 59998973230457367667899999714777777778993462048889899999999999998874107899813899
Q gi|254780832|r 15 PFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILS 94 (628)
Q Consensus 15 ~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~a 94 (628)
T Consensus 24 ~~~l~~i~iG~~---IGtGiF~~~g~a~~~aG--------P~~ll~--~~i~g~i~~~~~~~~aEl~~~~P~~G--~~-- 86 (469)
T PRK11049 24 NRHIQLIAIGGA---IGTGLFMGSGKTISLAG--------PSIIFV--YMIIGFMLFFVMRAMGELLLSNLEYK--SF-- 86 (469)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHC--------HHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCC--CH--
T ss_conf 889999999989---99999999899999859--------599999--99999999999999999998668877--49--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999872675542577899999999965003469999999872466427366761289999999999975000189999
Q gi|254780832|r 95 LLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVA 174 (628)
Q Consensus 95 L~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g 174 (628)
T Consensus 87 -~~y~~~~~G~------~~Gf~~GW~~~~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~--~~~~~~~~~~inl~~v~~~g 157 (469)
T PRK11049 87 -SDFASDLLGP------WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVA--SLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred -HHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999684------89999999999999999999999999999983586517899--99999999999999999999
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHC---CCCCCC-CCCHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98---4599999999999999986501---874444-6796899999983743589-99989999851087874364546
Q gi|254780832|r 175 CF---FSPIMVAWLLMITVSGLIHISD---DWGILA-AFNPMYALHMVFGKGTISL-VVLGSVFLTITGAEALYADLGHF 246 (628)
Q Consensus 175 ~~---F~pi~~lwf~~i~~~gi~~i~~---~p~vl~-a~~P~~~~~~~~~~~~~g~-~~lg~v~La~TG~EAl~advghF 246 (628)
T Consensus 158 ~~e~~~~~iKi~~i~~~ii~g~~~~~~~~~~p~~~~~~~~~~~~~~g~~p~G~~g~~~a~~~~~faf~G~e~i~~~A~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGISGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999999999999999985046788877676544577898786545899999999999943789999999995
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHH-CCH----HHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 7116--999999999999999974786873-592----455203687----278632899999999999996030-1002
Q gi|254780832|r 247 GRKP--IQYAWMVIFPALAINYLGQGALVL-SNP----EAIKDPFYM----MFGGWFLPFAVLTATCATVIASQA-VITG 314 (628)
Q Consensus 247 ~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll-~~~----~~~~~~f~~----~~p~~~~~~~v~~at~a~iIaSqa-~isg 314 (628)
T Consensus 238 knP~r~iP~ai~~~~~~i~i~Yv~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~-ii~~~~l~s~~s~~n~~~~~ 316 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAAS-VINFVVLTSAASSANSGVFS 316 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 18765699999999999999999999999710677652777672999999929806999-99999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 58999999975998865687038876
Q gi|254780832|r 315 TFSLARQAIHLGFLPRMKIFFTSETF 340 (628)
Q Consensus 315 ~Fsl~~qai~l~~~Pr~~i~~tS~~~ 340 (628)
T Consensus 317 ~sR~lyamar~G~lP~~-f~~~~k~g 341 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKA-FAKLSKRA 341 (469)
T ss_pred HHHHHHHHHCCCCCCHH-HHHCCCCC
T ss_conf 99999998708997789-87549999