HHsearch alignment for GI: 254780832 and conserved domain: TIGR03428
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.62 E-value=5.1e-05 Score=50.53 Aligned_cols=305 Identities=12% Similarity=0.028 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 999999999999988741078998138999999987267554257789999999996500346999999987246-----
Q gi|254780832|r 66 IWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGV----- 140 (628)
Q Consensus 66 ~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl----- 140 (628)
T Consensus 56 ~~~~~~~valslAELaS~~P~a--GG~---Y~w~~~~a~~~~g~------~~GW~~~~~~~~~~a~~~~~~~~~l~~~~~ 124 (475)
T TIGR03428 56 VFVGQLLVALNFAELAARYPIS--GAI---YQWSRRMGGEVIGW------FAGWFMIIAQIVTAAAAAIALQVVLPNIWS 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--CHH---HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999877797--539---99999985118799------999999999999999999999999999997
Q ss_pred --HHH--CCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf --642--7366-----7612899999999999750001899999845999999999999999865018744446796899
Q gi|254780832|r 141 --RYI--APEL-----DNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYA 211 (628)
Q Consensus 141 --~~~--~P~l-----~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~ 211 (628)
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~in~~g~r~l~~~~~~~~~~~~~~~~~vi~~l~~~~~-----~~~~~~ 199 (475)
T TIGR03428 125 GFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ-----RGPGVV 199 (475)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEE
T ss_conf 655406775435775317799999999999999999759999999999999999987864433530356-----787612
Q ss_pred HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH------HHHHHHH--H--HHHHHHHHHHHHH--HHH
Q ss_conf 9999837-----43589999899998510878743645467116------9999999--9--9999999974786--873
Q gi|254780832|r 212 LHMVFGK-----GTISLVVLGSVFLTITGAEALYADLGHFGRKP------IQYAWMV--I--FPALAINYLGQGA--LVL 274 (628)
Q Consensus 212 ~~~~~~~-----~~~g~~~lg~v~La~TG~EAl~advghF~~~~------i~~aw~~--v--~~~L~l~y~Gq~a--~ll 274 (628)
T Consensus 200 ~~~~~~~~~~~~~~a~~~g~l~~~~~~~G~Da~~h~aEE~~np~r~vPraii~sv~i~~v~g~~~~i~~l~~~~~~~~~~ 279 (475)
T TIGR03428 200 FDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGR 279 (475)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 03688899997289999999999999942778887688851851000299999999999999999999999704355420
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC-EEEEECCCCCCCCEECHHHHHHH
Q ss_conf 59245520368727863289999999999999603010025899999997599886-56870388765711006899999
Q gi|254780832|r 275 SNPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPR-MKIFFTSETFKGQVFLPSINLFL 353 (628)
Q Consensus 275 ~~~~~~~~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr-~~i~~tS~~~~gqiYip~In~ll 353 (628)
T Consensus 280 ~~~~~~p~i~~~~~g~~~~~~~~~~i~i~~~~~~~~~~~a~SR~~~AfARDg~LPfS~~~~~V~pr--~~~Pv~A~~~~~ 357 (475)
T TIGR03428 280 LAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR--TGTPILPSIVIG 357 (475)
T ss_pred CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCC--CCCCHHHHHHHH
T ss_conf 477646999999705088999999999999999999999866876220158998731454124999--998498999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 99988877732688898878999---999999998999
Q gi|254780832|r 354 FVGVLLFVIGFRHSESLVAAYGI---SVSGTMVISTIM 388 (628)
Q Consensus 354 ~ia~i~lvl~f~~s~~L~~aYgi---~V~~tf~lTt~l 388 (628)
T Consensus 358 ~~~~~lgli~lgS~~Af~ai~s~~~~~l~~sy~~~~~~ 395 (475)
T TIGR03428 358 VLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987439999999999999999999999999