Query gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 628
No_of_seqs 195 out of 803
Neff 5.8
Searched_HMMs 39220
Date Mon May 30 02:35:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780832.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10745 trkD potassium transp 100.0 0 0 1553.2 62.7 616 10-628 4-622 (622)
2 COG3158 Kup K+ transporter [In 100.0 0 0 1498.9 52.7 625 1-628 1-627 (627)
3 pfam02705 K_trans K+ potassium 100.0 0 0 1429.2 51.4 606 18-628 2-731 (731)
4 TIGR00794 kup potassium uptake 100.0 0 0 1349.2 43.7 607 18-628 1-814 (814)
5 PRK10644 arginine:agmatin anti 99.7 1.7E-11 4.3E-16 92.4 32.1 353 1-396 1-378 (445)
6 COG0531 PotE Amino acid transp 99.6 8.6E-10 2.2E-14 81.4 36.6 356 4-395 4-389 (466)
7 PRK11021 inner membrane protei 99.6 8.2E-10 2.1E-14 81.5 34.8 294 59-376 30-340 (410)
8 PRK10580 proY putative proline 99.5 3.9E-09 9.9E-14 77.2 35.5 422 1-461 1-456 (457)
9 PRK10238 aromatic amino acid t 99.5 7.3E-10 1.9E-14 81.9 29.5 423 1-457 1-452 (456)
10 PRK10435 cadB lysine/cadaverin 99.5 5.1E-09 1.3E-13 76.4 34.4 386 30-459 21-433 (435)
11 PRK11357 frlA putative fructos 99.5 5.7E-09 1.4E-13 76.1 31.1 328 28-386 22-369 (445)
12 PRK10655 potE putrescine trans 99.5 1E-08 2.6E-13 74.5 37.7 369 60-457 37-433 (438)
13 PRK11387 S-methylmethionine tr 99.5 1E-08 2.7E-13 74.4 35.7 419 3-458 5-462 (465)
14 PRK11049 D-alanine/D-serine/gl 99.3 1.5E-07 3.7E-12 67.0 32.3 298 15-340 24-341 (469)
15 PRK10746 putative transport pr 99.0 1.9E-06 4.8E-11 59.8 31.9 415 1-456 1-453 (461)
16 PRK10249 phenylalanine transpo 99.0 2.4E-06 6.2E-11 59.1 35.6 342 15-387 25-387 (458)
17 pfam00324 AA_permease Amino ac 98.9 7.8E-06 2E-10 55.8 34.0 317 62-393 33-385 (473)
18 PRK10836 lysine transporter; P 98.6 4.2E-05 1.1E-09 51.1 34.0 338 15-383 19-387 (489)
19 TIGR03428 ureacarb_perm permea 98.6 5.1E-05 1.3E-09 50.5 30.5 305 66-388 56-395 (475)
20 PRK10197 gamma-aminobutyrate t 98.6 6.9E-05 1.8E-09 49.7 34.8 289 62-367 29-336 (446)
21 KOG1286 consensus 98.5 0.00012 3E-09 48.1 21.7 341 15-386 34-414 (554)
22 KOG1287 consensus 98.2 0.00055 1.4E-08 43.9 24.5 398 19-449 16-444 (479)
23 TIGR00909 2A0306 amino acid tr 97.8 0.0027 6.8E-08 39.4 24.8 303 72-396 52-393 (451)
24 COG1113 AnsP Gamma-aminobutyra 97.7 0.0036 9.2E-08 38.5 25.0 308 17-361 19-351 (462)
25 COG0833 LysP Amino acid transp 96.8 0.039 9.9E-07 31.9 25.3 345 16-395 49-431 (541)
26 pfam01490 Aa_trans Transmembra 93.3 0.53 1.4E-05 24.5 30.6 179 58-246 34-222 (405)
27 KOG1289 consensus 92.9 0.61 1.6E-05 24.1 23.9 414 14-450 54-509 (550)
28 TIGR00911 2A0308 L-type amino 92.7 0.64 1.6E-05 24.0 24.9 407 19-462 63-532 (546)
29 TIGR00906 2A0303 cationic amin 85.1 2.4 6E-05 20.3 17.2 342 14-394 35-439 (616)
30 TIGR00930 2a30 K-Cl cotranspor 84.5 2.5 6.4E-05 20.2 13.8 422 69-523 125-735 (1171)
31 KOG2082 consensus 83.7 2.7 6.9E-05 20.0 16.1 272 231-520 421-726 (1075)
32 cd03415 CbiX_CbiC Archaeal sir 79.3 2.1 5.3E-05 20.7 3.1 60 544-603 34-124 (125)
33 TIGR00908 2A0305 ethanolamine 77.8 4.3 0.00011 18.7 26.1 333 107-452 80-443 (456)
34 pfam05857 TraX TraX protein. T 76.0 4.8 0.00012 18.4 9.9 66 315-391 37-102 (216)
35 TIGR00814 stp serine transport 72.2 5.9 0.00015 17.8 8.7 302 58-372 35-376 (419)
36 COG4059 MtrE Tetrahydromethano 70.1 6.6 0.00017 17.5 3.9 31 426-456 258-288 (304)
37 TIGR01478 STEVOR variant surfa 68.7 6.7 0.00017 17.4 3.6 40 421-460 269-310 (315)
38 cd03816 GT1_ALG1_like This fam 64.2 2.7 7E-05 19.9 0.8 17 24-40 8-24 (415)
39 pfam03222 Trp_Tyr_perm Tryptop 63.9 8.7 0.00022 16.7 26.8 124 62-196 39-168 (393)
40 PRK13882 conjugal transfer pro 63.8 8.7 0.00022 16.7 10.3 69 315-390 46-114 (232)
41 pfam01235 Na_Ala_symp Sodium:a 63.3 8.9 0.00023 16.6 26.6 233 31-310 16-280 (415)
42 pfam10860 DUF2661 Protein of u 59.5 10 0.00026 16.2 3.2 75 490-578 15-89 (109)
43 TIGR01196 edd phosphogluconate 54.9 7.2 0.00018 17.2 1.6 38 452-490 193-231 (614)
44 PRK09395 actP acetate permease 53.0 13 0.00034 15.5 25.2 99 314-418 375-477 (551)
45 KOG3796 consensus 52.9 13 0.00034 15.5 3.9 39 139-177 50-88 (442)
46 PRK09953 wcaD putative colanic 52.2 14 0.00035 15.4 2.8 20 533-552 322-341 (405)
47 PRK13476 cytochrome b6-f compl 51.4 14 0.00036 15.3 5.8 62 237-298 16-86 (160)
48 TIGR00596 rad1 DNA repair prot 49.9 2.1 5.2E-05 20.7 -1.8 48 497-546 547-598 (939)
49 TIGR00792 gph sugar (Glycoside 49.3 15 0.00039 15.1 8.2 215 136-365 66-329 (470)
50 COG1953 FUI1 Cytosine/uracil/t 48.6 15 0.00039 15.1 18.1 258 162-442 182-480 (497)
51 cd03409 Chelatase_Class_II Cla 47.7 13 0.00033 15.6 2.0 36 542-577 33-70 (101)
52 smart00794 AgrD Staphylococcal 46.7 7.5 0.00019 17.1 0.7 21 541-561 23-43 (45)
53 pfam05931 AgrD Staphylococcal 44.3 8.6 0.00022 16.7 0.7 21 541-561 23-43 (45)
54 TIGR02311 HpaI 2,4-dihydroxyhe 42.1 8.4 0.00021 16.8 0.4 14 237-250 172-185 (249)
55 PRK12488 acetate permease; Pro 37.1 23 0.00059 13.9 25.1 104 311-419 370-476 (549)
56 KOG2568 consensus 37.1 23 0.00059 13.9 10.6 24 428-452 422-445 (518)
57 PTZ00042 stevor; Provisional 37.0 23 0.00059 13.9 3.1 24 431-454 269-292 (304)
58 cd03414 CbiX_SirB_C Sirohydroc 36.8 23 0.0006 13.9 2.8 35 543-578 34-70 (117)
59 PRK10484 putative symporter Yi 36.4 24 0.00061 13.9 24.6 19 90-108 99-117 (528)
60 PRK06531 yajC preprotein trans 36.2 24 0.00061 13.8 3.0 41 430-477 2-42 (120)
61 pfam02471 OspE Borrelia outer 36.1 20 0.0005 14.4 1.5 23 536-558 63-85 (108)
62 PRK07668 hypothetical protein; 34.6 25 0.00065 13.7 6.9 20 430-449 195-214 (248)
63 pfam05297 Herpes_LMP1 Herpesvi 34.5 25 0.00065 13.7 14.2 68 392-462 128-198 (382)
64 pfam04725 PsbR Photosystem II 33.6 19 0.00048 14.5 1.0 36 31-75 49-84 (99)
65 KOG2941 consensus 33.4 18 0.00045 14.7 0.9 23 537-559 315-337 (444)
66 pfam11241 DUF3043 Protein of u 33.2 27 0.00068 13.5 4.5 19 347-365 76-94 (168)
67 COG1114 BrnQ Branched-chain am 32.9 27 0.00069 13.5 28.1 115 151-268 122-248 (431)
68 PRK00923 sirohydrochlorin coba 31.9 28 0.00071 13.4 2.8 15 547-561 75-89 (130)
69 TIGR01156 cytb6/f_IV cytb6/f c 31.8 28 0.00072 13.4 4.4 66 237-302 16-90 (160)
70 TIGR00328 flhB flagellar biosy 31.5 29 0.00073 13.3 7.7 90 431-553 193-286 (352)
71 pfam01566 Nramp Natural resist 31.5 29 0.00073 13.3 22.3 106 65-180 15-123 (365)
72 COG3513 Predicted CRISPR-assoc 31.4 29 0.00073 13.3 3.8 71 60-139 118-190 (1088)
73 PRK09442 panF sodium/panthothe 31.3 29 0.00073 13.3 25.3 104 285-394 313-418 (479)
74 TIGR02380 ECA_wecA undecapreny 31.0 23 0.00059 13.9 1.2 33 323-356 198-231 (349)
75 pfam05525 Branch_AA_trans Bran 30.9 29 0.00074 13.3 21.3 109 157-269 126-242 (428)
76 COG1165 MenD 2-succinyl-6-hydr 28.3 10 0.00026 16.2 -1.0 17 585-601 545-561 (566)
77 PRK10519 hypothetical protein; 27.9 33 0.00083 13.0 4.4 46 135-184 14-60 (151)
78 KOG3764 consensus 27.8 25 0.00065 13.7 0.9 192 203-443 152-350 (464)
79 pfam11086 DUF2878 Protein of u 27.6 33 0.00085 12.9 7.5 51 403-453 48-98 (152)
80 cd03416 CbiX_SirB_N Sirohydroc 27.0 34 0.00087 12.9 3.0 25 543-567 33-59 (101)
81 pfam06166 DUF979 Protein of un 26.5 35 0.00088 12.8 13.4 52 94-145 16-74 (308)
82 pfam06086 Pox_A30L_A26L Orthop 26.1 15 0.00039 15.1 -0.5 26 173-198 179-204 (220)
83 KOG1288 consensus 26.1 35 0.0009 12.8 23.5 263 109-385 152-457 (945)
84 KOG2083 consensus 24.6 37 0.00096 12.6 8.6 162 69-250 75-253 (643)
85 TIGR01788 Glu-decarb-GAD gluta 22.9 18 0.00045 14.7 -0.7 50 474-523 371-425 (493)
86 PRK05585 yajC preprotein trans 22.8 41 0.001 12.3 4.8 45 427-477 15-59 (107)
87 TIGR00643 recG ATP-dependent D 22.0 29 0.00074 13.3 0.3 22 493-514 514-535 (721)
88 pfam02009 Rifin_STEVOR Rifin/s 21.9 42 0.0011 12.2 3.5 25 434-458 256-280 (289)
89 TIGR01825 gly_Cac_T_rel pyrido 21.5 36 0.00092 12.7 0.7 24 601-624 212-236 (392)
90 cd06288 PBP1_sucrose_transcrip 20.7 45 0.0011 12.1 1.3 10 507-516 203-212 (269)
91 KOG3643 consensus 20.4 45 0.0012 12.0 2.9 98 305-407 205-307 (459)
92 pfam08634 Pet127 Mitochondrial 20.2 45 0.0012 12.1 1.0 17 472-488 149-165 (274)
No 1
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=0 Score=1553.18 Aligned_cols=616 Identities=42% Similarity=0.759 Sum_probs=600.5
Q ss_pred HCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 20420599989732304573676678999997147777777789934620488898999999999999988741078998
Q gi|254780832|r 10 KNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGE 89 (628)
Q Consensus 10 ~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GE 89 (628)
++++...+|+++|||||||||||||||++|++|++. ++..++++||+|++|||||||+++||+|||+++||||||||
T Consensus 4 ~~k~~l~aL~l~alGvVyGDIGTSPLY~~~~~~~~~---~~~~~~~~~ilGvlSlIfWtl~liv~~KYv~~vlradn~GE 80 (622)
T PRK10745 4 DNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQ---FGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGE 80 (622)
T ss_pred CCCCCHHHHHHHHHCEEECCCCCCHHHHHHHHHCCC---CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
T ss_conf 542227999986217682656577899989986268---89999831022588999999999999988607996388986
Q ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 13899999998726755-42577899999999965003469999999872466427366761289999999999975000
Q gi|254780832|r 90 GGILSLLALLLKKIPKR-STVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSH 168 (628)
Q Consensus 90 GGi~aL~sl~~~~~~~~-~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~r 168 (628)
|||||||||++|+.+++ +.++.++|++|+|+++||++|||||||+||+|||+++.|++++|++|++++|+++||.+|++
T Consensus 81 GGi~aL~sL~~r~~~~r~~~~l~~l~l~G~al~~gDgviTPAISVLSAveGl~v~~p~~~~~vvpit~~IL~~LF~~Q~~ 160 (622)
T PRK10745 81 GGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH 160 (622)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 49999999986442741367999999999999970621024108887750432057776772566899999999999762
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 18999998459999999999999998650187444467968999999837435899998999985108787436454671
Q gi|254780832|r 169 GTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGR 248 (628)
Q Consensus 169 Gt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~ 248 (628)
||+++|+.|||+|.+||++++++|++|+.++|++++|+||+|+++|+.+|+..||.+||+++||+||+||+|||||||||
T Consensus 161 GT~~ig~~FgPim~vWF~~l~~~Gi~~i~~~p~vl~AlnP~yai~f~~~~~~~g~~~LG~V~L~vTG~EALyADmGHfg~ 240 (622)
T PRK10745 161 GTGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIALGAVVLSITGVEALYADMGHFGK 240 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHCCHHHHHHHHCCCCC
T ss_conf 31777646505999999999999999991588898561879999999968984033202033102438888642144576
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 16999999-99999999997478687359245520368727863289999999999999603010025899999997599
Q gi|254780832|r 249 KPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGF 327 (628)
Q Consensus 249 ~~i~~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~~~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~ 327 (628)
+|||.||+ +++|||+|||+||||++++||++.+||||.+.|+|.+||++++||+|++|||||+|||+||+++||+++||
T Consensus 241 ~~Ir~aw~~~v~P~L~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~v~lAt~AtiIASQA~Isg~FSl~~Qai~Lg~ 320 (622)
T PRK10745 241 FPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGY 320 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 33624169999999999861068888609303238578708525578999999999999888999989899999997399
Q ss_pred CCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 88656870388765711006899999999888777326888988789999999999989999999998358569999999
Q gi|254780832|r 328 LPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIF 407 (628)
Q Consensus 328 ~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~ 407 (628)
+||++++|||+++.||||+|.|||+||++|+++++.|++|++|++|||+||+++|++||+++..++++.|||+.+....+
T Consensus 321 ~Prl~i~hTS~~~~GQIYiP~vNw~L~v~~i~~vl~F~~S~~la~AYGiaVt~tM~iTT~l~~~v~~~~w~~~~~~~~~~ 400 (622)
T PRK10745 321 LSPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALI 400 (622)
T ss_pred CCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 88824773686658727568998999999984504755748888875566566989999999999999748019999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCCCCCEEEEE
Q ss_conf 999999999999999985234869999999999999999899999999986424899789986211-6777436026786
Q gi|254780832|r 408 LFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIE-NSSQQVPGTAIFL 486 (628)
Q Consensus 408 ~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~-~~~~rvpGtavfl 486 (628)
...|+++|+.|+++|+.||+||||+|++++.+++.+|++|++||+++.++.++++.+++.|+.+++ +++.|+||||+|+
T Consensus 401 ~~~f~~id~~f~~anl~Ki~~GGW~pl~i~~~~~~im~tW~~Gr~~l~~~~~~~~~~l~~f~~~l~~~~~~RVpGtaVFl 480 (622)
T PRK10745 401 LIAFLCVDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM 480 (622)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 99999999999999997616877599999999999999988709999999985389889999985027987778569995
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 17766601899998761777633799999986375636755179999737997999999467667898999999997389
Q gi|254780832|r 487 TSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNNGL 566 (628)
Q Consensus 487 t~~~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~V~~~eR~~v~~l~~g~~rv~~ryGf~e~p~i~~~L~~~~~~~i 566 (628)
|++++++|++++||+||||++||+++|+||+++|+|||+++||+++++++||+|||++||||||+||+|+.|++|.++++
T Consensus 481 t~~~~~vP~al~hnlkhn~vLHe~vV~ltv~~~~vP~V~~~eR~~v~~l~~g~~rvv~rYGfmE~Pdvp~~L~~~~~~gl 560 (622)
T PRK10745 481 SRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGL 560 (622)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 58988799799999985776520599999996787515667848999857956999998666889986999999986799
Q ss_pred CCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEEEC
Q ss_conf 98886249999988887268889488999999999724659788709882457898878319
Q gi|254780832|r 567 KFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIMLSTYAEDPSDYFHLPANRVVEIVSHVNI 628 (628)
Q Consensus 567 ~~~~~~~sfflgre~l~~~~~~~m~~w~~~lF~~l~rna~~~~~~f~LP~~rvvEiG~~vei 628 (628)
++|+||+|||+|||+++++++++|++||+++|++|+|||.+++|||+||+|||||+|+||||
T Consensus 561 ~~~~~~tsfFlgRe~lv~~~~~gm~~Wr~~LF~~M~RNA~~atdyF~LP~nRVVElGtqVEI 622 (622)
T PRK10745 561 SCRMMETSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred CCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCEEEC
T ss_conf 98844526995678997479985288999999999871827676636998768994117749
No 2
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=1498.88 Aligned_cols=625 Identities=52% Similarity=0.918 Sum_probs=610.2
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98762244320420599989732304573676678999997147777777789934620488898999999999999988
Q gi|254780832|r 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILL 80 (628)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~ 80 (628)
|+....+.+.+++.+.+++++|+|||||||||||||+++|+|++.. +..+++++|+|++||||||||+|||+|||++
T Consensus 1 ~~~~~~~~~~~~~~~~~l~lgAiGVVyGDIGTSPLYa~~e~~~~~~---~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~ 77 (627)
T COG3158 1 MGSAEAMSTSFKKSTKALTLGAIGVVYGDIGTSPLYALREALSGQG---GLGVSRDEVLGVLSLIIWTLTLIVTIKYVLF 77 (627)
T ss_pred CCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCHHHHHHHHHCCCC---CCCCCCCEEEEHHHHHHHHHHHHHHHHHHEE
T ss_conf 9977433334332116673330036855678976899999964578---9987723120069999999999998744235
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 74107899813899999998726755425778999999999650034699999998724664273667612899999999
Q gi|254780832|r 81 LLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILV 160 (628)
Q Consensus 81 ~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~ 160 (628)
+|||||||||||++|++|++|..+|+..++.++|++|+|+++||++|||||||+||+|||+.+.|.+++|++|++++|++
T Consensus 78 vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~~~VvpitliIL~ 157 (627)
T COG3158 78 VLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALDPYVVPITLIILV 157 (627)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 78537788831643999987656777413457888768887515032336789988522010684446755899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99975000189999984599999999999999986501874444679689999998374358999989999851087874
Q gi|254780832|r 161 LLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240 (628)
Q Consensus 161 ~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~ 240 (628)
.||.+|++||+++|++|||+|.+||+.++..|++|++++|++++|+||+|+++|+.+++..||+.||+++||+||+||+|
T Consensus 158 ~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGaVfLavTGaEALY 237 (627)
T COG3158 158 LLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALY 237 (627)
T ss_pred HHHHHHCCCCCHHHHEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEEECCHHHHH
T ss_conf 99987415750243300569999999999978998814988987628799999999678607999103102205599987
Q ss_pred CCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 3645467116999999-999999999974786873592455203687278632899999999999996030100258999
Q gi|254780832|r 241 ADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLA 319 (628)
Q Consensus 241 advghF~~~~i~~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~~~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~ 319 (628)
||||||||+|||.||+ .++|||+|||+||||++++||++.+||||.+.|+|.++|++++||+||+|||||+|||+||++
T Consensus 238 ADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~np~a~~npFF~~~P~~aliP~viLAT~ATVIASQAvISGaFSLt 317 (627)
T COG3158 238 ADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVILATAATVIASQAVISGAFSLT 317 (627)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40146677438898999999999997735401101584201484788381428989999999999999888786376999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99997599886568703887657110068999999998887773268889887899999999999899999999983585
Q gi|254780832|r 320 RQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKW 399 (628)
Q Consensus 320 ~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~~~~ 399 (628)
+||+++|++||++++|||+++.||||+|.+||+|+++++.+++.|++|++|++|||++|+++|.+||+|+..++|++|||
T Consensus 318 rQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~w~w 397 (627)
T COG3158 318 RQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKW 397 (627)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHEEEECCHHHHHHHHCHHEEEHHHHHHHHHHHHHHHHCCC
T ss_conf 99997378775477723776365077467779999998621268457377788637111206599999999999981684
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCC
Q ss_conf 69999999999999999999999985234869999999999999999899999999986424899789986211-67774
Q gi|254780832|r 400 KISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIE-NSSQQ 478 (628)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~-~~~~r 478 (628)
+++.+..+...|+++|..|+.+|+.||.||||+|++++.+++++|+||++|++++.++.+++++|++.|+.+++ +++.|
T Consensus 398 ~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~ 477 (627)
T COG3158 398 RKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVR 477 (627)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 09999999999999999998741021315977799999999998988776059999986437998899999986488810
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHHH
Q ss_conf 36026786177666018999987617776337999999863756367551799997379979999994676678989999
Q gi|254780832|r 479 VPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQAL 558 (628)
Q Consensus 479 vpGtavflt~~~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~V~~~eR~~v~~l~~g~~rv~~ryGf~e~p~i~~~L 558 (628)
+||||||+|+++|.+|.+++||+||||++||++||+|++++|+|||+++||+++|+++++|+|++++|||||+||+|++|
T Consensus 478 v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~~f~rV~l~~Gfme~pnv~~~l 557 (627)
T COG3158 478 VPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSDDFVRVVLHFGFMETPNVPRAL 557 (627)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHH
T ss_conf 67538997089764739999787452131115899999966888788532347567058469999996315787779999
Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEEEC
Q ss_conf 9999738998886249999988887268889488999999999724659788709882457898878319
Q gi|254780832|r 559 AELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIMLSTYAEDPSDYFHLPANRVVEIVSHVNI 628 (628)
Q Consensus 559 ~~~~~~~i~~~~~~~sfflgre~l~~~~~~~m~~w~~~lF~~l~rna~~~~~~f~LP~~rvvEiG~~vei 628 (628)
+.|+.+|.++|+||+|||++||++++++.++|++||+++|++|+||+.+|+|||+||+|||||+|+|+||
T Consensus 558 ~~~~~~G~~f~im~tsFfl~re~l~~~~~~g~~~w~~~lf~~l~r~aa~~~~~F~lp~~rvvElGtqveI 627 (627)
T COG3158 558 RLCRKKGLKFDIMETSFFLSRESLIASKNSGMPRWRDRLFIALARNAASPTDYFKLPPNRVVELGTQVEI 627 (627)
T ss_pred HHHHHCCCEECCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEEEEC
T ss_conf 9871058433025448999851321478998668899999999874699788627998737883215429
No 3
>pfam02705 K_trans K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.
Probab=100.00 E-value=0 Score=1429.18 Aligned_cols=606 Identities=33% Similarity=0.630 Sum_probs=572.7
Q ss_pred HHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 98973230457367667899999714777777778993462048889899999999999998874107899813899999
Q gi|254780832|r 18 LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLA 97 (628)
Q Consensus 18 l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~s 97 (628)
|++||||||||||||||||++|++|.+.. .+++|||+|++|||||||+|++++|||+++||||||||||||||||
T Consensus 2 La~qslGVVyGDIGTSPLYv~~~~f~~~~-----~~~~~~ilGvlSLIfWtL~liv~iKYv~ivlrAdn~GEGG~fALys 76 (731)
T pfam02705 2 LAFQSLGVVYGDIGTSPLYVFSSTFSGGI-----SHSEDDILGVLSLIFWTLTLIPLFKYVFIVLRADDNGEGGTFALYS 76 (731)
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHCCCC-----CCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHH
T ss_conf 52012365837676778999999853899-----9981407509999999999999999984787269799729999999
Q ss_pred HHHHHCC---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987267---------------------------------------5542577899999999965003469999999872
Q gi|254780832|r 98 LLLKKIP---------------------------------------KRSTVLIALGLAGSALFIGDSMVTPALSVLSAVE 138 (628)
Q Consensus 98 l~~~~~~---------------------------------------~~~~~~~~~gligaa~ll~D~iLTpAISVlSave 138 (628)
|+|||.+ +.+.+++++|++|+|+++|||+|||||||+||||
T Consensus 77 Ll~R~ak~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l~~l~l~G~~m~~gDgviTPAiSVLSAve 156 (731)
T pfam02705 77 LLCRHAKVRLIPNQQETDEELSTYALTTPPELNFAAGLKSKLEKHKFLKKALLILVLLGTSMVIGDGVLTPAISVLSAVS 156 (731)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
T ss_conf 99865235678741000344321101465321035677765431046788999999987888751544454230110430
Q ss_pred HHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH
Q ss_conf 466427366-761289999999999975000189999984599999999999999986501-874444679689999998
Q gi|254780832|r 139 GVRYIAPEL-DNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD-DWGILAAFNPMYALHMVF 216 (628)
Q Consensus 139 gl~~~~P~l-~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~ 216 (628)
||+.+.|++ +++++|++++||++||++|++||+++|+.|||+|.+||.+++++|++|+++ +|++++|+||+|+++|+.
T Consensus 157 Gl~v~~p~l~~~~vv~is~~ILv~LF~~Q~~GT~kvg~~FgPIm~~Wf~~i~~~Gi~ni~~~~p~Vl~AlnP~y~~~f~~ 236 (731)
T pfam02705 157 GLEIVAPSLSTNAVVPVSCVILVLLFSIQHFGTDKVGFLFAPIVLLWLLSIAGIGIYNIVKFDPTVLKALSPYYAVQFFK 236 (731)
T ss_pred CCEECCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH
T ss_conf 51203777788755567999999999998424167776760099999999999999998735988982518699999999
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 3743589999899998510878743645467116999999-999999999974786873592455203687278632899
Q gi|254780832|r 217 GKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPF 295 (628)
Q Consensus 217 ~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~i~~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~~~~f~~~~p~~~~~~ 295 (628)
+|+..||.+||+++||+||+||+|||||||+|++||.||+ +++|||+|||+||||++++||++.+||||.+.|+|++||
T Consensus 237 ~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQ~A~l~~~p~~~~npFf~~~P~~~~~P 316 (731)
T pfam02705 237 ETGTDGWISLGGILLSITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSKHPEAYANPFYRSIPDWLYWP 316 (731)
T ss_pred HCCCCCEEECCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCCHHHHH
T ss_conf 67863102203212441428898765146676338788999999999998501588875291220583787588136889
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999603010025899999997599886568703887657110068999999998887773268889887899
Q gi|254780832|r 296 AVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYG 375 (628)
Q Consensus 296 ~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYg 375 (628)
++++||+|++|||||+|||+||+++|+++||||||+|++|||++..||||+|.|||+||++|+++++.|++|++|++|||
T Consensus 317 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~kI~hTS~~~~GQIYiP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 396 (731)
T pfam02705 317 VFIIATLAAIVASQAMISGTFSIISQAVALGCFPRVKIIHTSKKFHGQIYIPEINWLLMIGCIAVTAGFRDTSNLGNAYG 396 (731)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEHHHHHHHHHHHHHHEEEECCCHHHHHHHH
T ss_conf 99999999999998989867799999997288887147756876487252479999999998843257447088887753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989999999998358569999999999999999999999985234869999999999999999899999999
Q gi|254780832|r 376 ISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS 455 (628)
Q Consensus 376 i~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~ 455 (628)
+||+++|++||+|+..+++..|||+++.+..+.+.|+.+|+.|+++|+.||+||||+|++++.+++.+|++|+||+++++
T Consensus 397 iAV~~~M~iTT~L~~~v~~~~W~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~~ 476 (731)
T pfam02705 397 LAVTGVMLVTTCLMTLVMLLVWHWNIILVLLFLLIFGSVELLYFSANLIKILEGGWVPLVLSGIFMLVMSVWHYGTVRKY 476 (731)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67556989999999999999828019999999999999999999999864147866799999999999988777289999
Q ss_pred HHHHHCCCCHHHHHHHHC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 986424899789986211-6777436026786177666018999987617776337999999863756367551799997
Q gi|254780832|r 456 TLTRHADIPIHSFIISIE-NSSQQVPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEK 534 (628)
Q Consensus 456 ~~~~~~~~~~~~f~~~~~-~~~~rvpGtavflt~~~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~V~~~eR~~v~~ 534 (628)
+++.+++++++.++.... .++.||||+|+|||+.++++|+++.||++|||++||+++|+||+++|+|+||++||+.+++
T Consensus 477 ~~~~~~~v~~~~~~~~~~~~~~~RVpG~g~f~t~~~~gvP~~f~H~~~~~~~lH~~~Vfl~vk~~~vp~V~~~eR~~v~r 556 (731)
T pfam02705 477 EFEVEHRVSMSWLLALGPKLGLVRVPGIGLVYTELVSGIPAIFSHFVTNLPAIHSVVVFVCVKSVPVPTVPPEERFLVSR 556 (731)
T ss_pred HHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCHHHCEEEEE
T ss_conf 99986488989999746537986248758992377767976788776527654314899998754567777578278899
Q ss_pred CCC---CEEEEEEEECCCCCCCHHHHHHHH---------HHCCC------------------------------------
Q ss_conf 379---979999994676678989999999---------97389------------------------------------
Q gi|254780832|r 535 ISE---HFSRVELFFGYMEEQNVSQALAEL---------RNNGL------------------------------------ 566 (628)
Q Consensus 535 l~~---g~~rv~~ryGf~e~p~i~~~L~~~---------~~~~i------------------------------------ 566 (628)
++| ++|||++||||||.++.+..+++. +.+..
T Consensus 557 vgp~~~~~yRcvvRYGY~D~~~~~~~fe~~li~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 636 (731)
T pfam02705 557 VGPKEFRMFRCVARYGYRDVHKEDDDFEAFLVESIREFIRLEERMAATSNDIYSDRYSVCGTEEQYIDKLENSHIHNSEP 636 (731)
T ss_pred ECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54776745899987630567778615899999999999865554214556666654346664211234444555556777
Q ss_pred ---------CC----------------------CCCCEEEEEEEEEEEECCCCCHHH--HHHHHHHHHHHCCCCHHHHCC
Q ss_conf ---------98----------------------886249999988887268889488--999999999724659788709
Q gi|254780832|r 567 ---------KF----------------------EIMNTSFYLGRRKLVPTSRAGMPN--WQDHLFIMLSTYAEDPSDYFH 613 (628)
Q Consensus 567 ---------~~----------------------~~~~~sfflgre~l~~~~~~~m~~--w~~~lF~~l~rna~~~~~~f~ 613 (628)
.+ ....++|++||+++++++.+++.| +.+.+|.||+||||++...|+
T Consensus 637 s~~~~~~~~~~~~~~~~~~~~~~~~El~~l~~a~~~gv~YilG~~~v~a~~~S~~~kk~~in~~y~fLr~N~R~~~~~l~ 716 (731)
T pfam02705 637 SIQELARVVNLSVEERTKPDEELEEELAELDEARESGVSYIMGHTYVKAKKGSSFLKKIAINHVYAFLRRNCRANDVNLK 716 (731)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 76555554334677765557569999999999987598999625489988998289999999999999986489850417
Q ss_pred CCCCCEEEEEEEEEC
Q ss_conf 882457898878319
Q gi|254780832|r 614 LPANRVVEIVSHVNI 628 (628)
Q Consensus 614 LP~~rvvEiG~~vei 628 (628)
+|++|++|+||.+||
T Consensus 717 IP~~~lleVGm~y~I 731 (731)
T pfam02705 717 VPHESLLEVGMVYEI 731 (731)
T ss_pred CCHHHEEEECCEEEC
T ss_conf 975883881729979
No 4
>TIGR00794 kup potassium uptake protein; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) , yeast (HAK) , and plant (AtKT) sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0006813 potassium ion transport, 0016020 membrane.
Probab=100.00 E-value=0 Score=1349.20 Aligned_cols=607 Identities=36% Similarity=0.668 Sum_probs=566.3
Q ss_pred HHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHH
Q ss_conf 9897323045736766789999971477777777899346---204888989999999999999887410789-981389
Q gi|254780832|r 18 LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTE---VIGLVSLMIWVLTIVVTIKYILLLLRADND-GEGGIL 93 (628)
Q Consensus 18 l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~---v~G~lSli~Wtl~liv~vKYv~~~l~adn~-GEGGi~ 93 (628)
|+|||+|||||||||||||||++||.++- + .++++| ++|++|+|||++|+||++||+++||+|||| ||||+|
T Consensus 1 La~qS~GvIYGDIGTSPLYV~~stf~~~f---~-~~~~~Dde~~~GvlS~Ifw~~t~iv~fKY~fiVL~Ad~ndGEGG~f 76 (814)
T TIGR00794 1 LAFQSVGVIYGDIGTSPLYVLSSTFSGNF---G-LPTEEDDEEIFGVLSLIFWLLTIIVLFKYIFIVLFADDNDGEGGTF 76 (814)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHCCCCCC---C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHH
T ss_conf 95057666886667772245220048888---8-9865444889889999999999999874414667515899882199
Q ss_pred HHHHHHHHHC--------------------------------------------------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999998726--------------------------------------------------75542577899999999965
Q gi|254780832|r 94 SLLALLLKKI--------------------------------------------------PKRSTVLIALGLAGSALFIG 123 (628)
Q Consensus 94 aL~sl~~~~~--------------------------------------------------~~~~~~~~~~gligaa~ll~ 123 (628)
|||||++|.. ++.++.+++.+++|+|+.+|
T Consensus 77 alYSL~~Ryaki~~~~~~~~GsPektdlel~~~~~~~~~~~~~~~~l~~~~~~k~~le~~~~~~k~l~~~~l~g~Smv~g 156 (814)
T TIGR00794 77 ALYSLLARYAKISARPDHQEGSPEKTDLELLDEALSSYSTKSPNLELKKASSLKAKLEKSKFASKLLLLFGLLGVSMVIG 156 (814)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999987640578988888887520089999998765440442233012788853200606888999998898567530
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 003469999999872466427366-761289999999999975000189999984599999999999999986501-874
Q gi|254780832|r 124 DSMVTPALSVLSAVEGVRYIAPEL-DNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD-DWG 201 (628)
Q Consensus 124 D~iLTpAISVlSavegl~~~~P~l-~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~-~p~ 201 (628)
|++||||+||+|||+||+.+.|++ +.++++++++||++||.+|++||+|+|+.||||+.+||+.+...|+||+++ ||.
T Consensus 157 DgvLTPa~SVLSAv~G~~~~~P~l~~~~Vv~~s~~iL~~LF~iQ~~GT~kv~~~FAPI~~~Wll~~~~~G~YN~v~f~p~ 236 (814)
T TIGR00794 157 DGVLTPAISVLSAVSGIKIVAPSLSETDVVLISCIILVLLFLIQRFGTAKVAFTFAPIILVWLLLLASIGIYNIVKFDPE 236 (814)
T ss_pred CCCHHHHHHHHHHHCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 44010346787764663344688876500357889999997320221220114565799999999987546755330504
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 4446796899999983743589999899998510878743645467116999999-999999999974786873592455
Q gi|254780832|r 202 ILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAI 280 (628)
Q Consensus 202 vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~i~~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~ 280 (628)
|++|+||.|+++||.+++..+|.+||+++||+||+||||||||||++.+||+||. +++|||+|||+|||||+++|||++
T Consensus 237 Vl~AlsP~ya~qff~~~g~~~w~~LGGv~LSiTGvEamFADlGHF~~~~IqL~~~~~vyP~L~L~Y~GQaAyl~KhPea~ 316 (814)
T TIGR00794 237 VLKALSPYYAVQFFIESGTVGWVSLGGVVLSITGVEAMFADLGHFGKLAIQLAFTLFVYPSLILAYIGQAAYLSKHPEAI 316 (814)
T ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 54222769999999983955676622011320223577754312115067789999999999998741467752384000
Q ss_pred HHHHHHHCC----CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHH
Q ss_conf 203687278----6328999999999999960301002589999999759988656870388765711006899999999
Q gi|254780832|r 281 KDPFYMMFG----GWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVG 356 (628)
Q Consensus 281 ~~~f~~~~p----~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia 356 (628)
+||||..+| +|.+||++++||+||||||||+|+|+|+++||+++|||+||+|+.|||++.+||||||.|||+||++
T Consensus 317 ~NpFf~~iPGGln~~~~wP~fi~A~LAaiiASQA~Isg~Fsi~Sq~~~L~c~P~vkiIHTS~k~~GqiYIP~VNWlLm~~ 396 (814)
T TIGR00794 317 KNPFFKAIPGGLNEWVLWPLFIIAILAAIIASQAVISGVFSIISQAVKLDCFPRVKIIHTSKKYHGQIYIPEVNWLLMLA 396 (814)
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEECCHHHHHHHHH
T ss_conf 37612507777777439999999999999999999999999999998427899960787400223405014388888853
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88877732688898878999999999998999999999835856999999999999999999999998523486999999
Q gi|254780832|r 357 VLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLI 436 (628)
Q Consensus 357 ~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli 436 (628)
|+++++.|++|++|++|||+||+.+|.+||+|+..+++..|||+......+.+.|+.+|+.+++||+.|++||||+||.+
T Consensus 397 ~~~Vt~~f~~t~~~g~AYG~~Vt~~~~~Tt~L~t~Vm~~vWk~~~~~v~~~~~~F~s~e~~y~ss~l~K~~eGgW~Pl~l 476 (814)
T TIGR00794 397 VIAVTVGFRDTNNLGAAYGIAVTLVFLVTTCLMTVVMLIVWKWNILFVLLFLVVFLSVELLYLSSNLKKVPEGGWLPLLL 476 (814)
T ss_pred HHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 31134542231134544237788889999999999999985201388999999986378999999998750662478999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC------------------------------------------
Q ss_conf 99999999998999999999864248997899862116------------------------------------------
Q gi|254780832|r 437 ASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIEN------------------------------------------ 474 (628)
Q Consensus 437 ~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~~------------------------------------------ 474 (628)
+.+++.+|++|||+|.++++++.+++.++++.+.++++
T Consensus 477 s~~~~~~m~~W~~~~~r~~~~~~e~~~~~~~l~~~~K~~PPqsetvdlndrGrPmsivnssneelveyGvtlPkilktn~ 556 (814)
T TIGR00794 477 SGVFMSLMLLWRYGRSRKLRADLEHRVSISELIAELKKEPPQSETVDLNDRGRPMSIVNSSNEELVEYGVTLPKILKTNN 556 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCC
T ss_conf 99999999763368767778775257877765286637888764010036888125762652135552240013431278
Q ss_pred ------------CCCCCCCEEEEEE-------CCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf ------------7774360267861-------776660189999876177763379999998637563675517999973
Q gi|254780832|r 475 ------------SSQQVPGTAIFLT-------SDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKI 535 (628)
Q Consensus 475 ------------~~~rvpGtavflt-------~~~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~V~~~eR~~v~~l 535 (628)
+.+|+||+|++|+ +..+++|.++.|+++|++++||+.||+|++.++.|+|+++||+.++++
T Consensus 557 ~~L~L~~~~g~~~l~r~pG~g~~y~dssvhtl~~~~~~P~Vf~h~v~~~~~~h~~~iF~~~~~~~~P~V~~~ER~~i~~~ 636 (814)
T TIGR00794 557 NRLKLQPKIGLDNLVRVPGIGILYSDSSVHTLNLVNGVPAVFGHLVTKFPAIHEVFIFLSIRVLEIPTVLNEERFLISQV 636 (814)
T ss_pred CEEEEECCCCCCCCEEECCEEEEECCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEC
T ss_conf 74574034789972250607898737631332146324420554643055557068998864454471068722787751
Q ss_pred CC---CEEEEEEEECCCCCCCHHHHHHHHHHCC------------------CC------CC-------------------
Q ss_conf 79---9799999946766789899999999738------------------99------88-------------------
Q gi|254780832|r 536 SE---HFSRVELFFGYMEEQNVSQALAELRNNG------------------LK------FE------------------- 569 (628)
Q Consensus 536 ~~---g~~rv~~ryGf~e~p~i~~~L~~~~~~~------------------i~------~~------------------- 569 (628)
++ |+|||++||||||+|+.|++|+...-+. +. -|
T Consensus 637 ~p~~~g~~R~V~rYG~~d~~~~~kel~~~l~~~i~~~v~~~~~f~L~~~e~lsGG~G~~~d~~~~~~~~~~~~e~~~~~~ 716 (814)
T TIGR00794 637 GPKEYGMYRCVIRYGFRDTPEEPKELAALLVESIVEFVEEEAGFRLRELEELSGGAGEDSDAEKRCRKEAVKIEEIVENE 716 (814)
T ss_pred CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 44650049999984453674772437889999889998764678887751036898875545678764035444544034
Q ss_pred --------------------------------CCCEEEEEEEEEEEECCC-CCHHHHHHH-HHHHHHHCCCCHHHHCCCC
Q ss_conf --------------------------------862499999888872688-894889999-9999972465978870988
Q gi|254780832|r 570 --------------------------------IMNTSFYLGRRKLVPTSR-AGMPNWQDH-LFIMLSTYAEDPSDYFHLP 615 (628)
Q Consensus 570 --------------------------------~~~~sfflgre~l~~~~~-~~m~~w~~~-lF~~l~rna~~~~~~f~LP 615 (628)
-.+..|++||++...+++ +...|.+-+ +|.||++|+++..+.+++|
T Consensus 717 ~~~~SGP~~~~~~~~l~~~~A~~E~~~~DR~~~~~~~y~~g~~~~~~~~~~~~~~k~~~~hvf~~~~~N~~~~~~~L~ip 796 (814)
T TIGR00794 717 SSVASGPDSVLLRVELRDEEAVMELKRLDREVESGVLYVMGEEKLKLKKKSSILRKLLVNHVFLFLRKNLREKDKVLKIP 796 (814)
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 56466766302432106489999998724687648056740010203214526888999999898887641477613177
Q ss_pred -----CCCEEEEEEEEEC
Q ss_conf -----2457898878319
Q gi|254780832|r 616 -----ANRVVEIVSHVNI 628 (628)
Q Consensus 616 -----~~rvvEiG~~vei 628 (628)
+||++|+|+++||
T Consensus 797 dedee~~~l~~vG~v~~I 814 (814)
T TIGR00794 797 DEDEEKDRLLEVGIVVEI 814 (814)
T ss_pred CCCCCCCEEEEEEEEEEC
T ss_conf 777788606985016739
No 5
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.66 E-value=1.7e-11 Score=92.43 Aligned_cols=353 Identities=14% Similarity=0.131 Sum_probs=176.9
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHH
Q ss_conf 9876224432042059998973230457367667899999714777777778993462048889899999999----999
Q gi|254780832|r 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVV----TIK 76 (628)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv----~vK 76 (628)
|+++.|.|+= ..+.+..-.+|.+ ||+- ++........ .|-.|++-|-+.-+. ..-
T Consensus 1 ~~~~~~~kkl---Gl~~~~~l~vG~~---IGsG-iF~~~~~~a~--------------~gg~~ii~wli~~i~~~~~al~ 59 (445)
T PRK10644 1 MSSDADAHKV---GLIPVTLMVAGNI---MGSG-VFLLPANLAS--------------TGGIAIYGWLVTIIGALALSMV 59 (445)
T ss_pred CCCCCCCCCC---CHHHHHHHHHHHH---HHHH-HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986547786---8999999999989---9889-9996899999--------------7579999999999999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHH-H
Q ss_conf 9988741078998138999999987267554257789999999996500346999999987246642736676-1289-9
Q gi|254780832|r 77 YILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN-FIIL-I 154 (628)
Q Consensus 77 Yv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~-~~v~-i 154 (628)
|..+.-+-+ ..||. |.-.+|..++. .|-..+-.....+++.++.....+++.++..+|.+.+ .... .
T Consensus 60 ~aELas~~P--~~GG~---y~y~~~a~G~~------~gf~~g~~~~~~~~~~~~a~a~~~~~y~~~~~p~~~~~~~~~l~ 128 (445)
T PRK10644 60 YAKMSSLDP--SPGGS---YAYARRCFGPF------LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTIT 128 (445)
T ss_pred HHHHHHHCC--CCCCH---HHHHHHHHCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999998657--89967---99999997849------99999999999999999999999999999997517760999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC-CCCHHHHHHHHHHCCHHH-HHHHHHHHH
Q ss_conf 99999999975000189999984599999999999999986501-874444-679689999998374358-999989999
Q gi|254780832|r 155 ALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD-DWGILA-AFNPMYALHMVFGKGTIS-LVVLGSVFL 231 (628)
Q Consensus 155 ai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~-~p~vl~-a~~P~~~~~~~~~~~~~g-~~~lg~v~L 231 (628)
+++++.+++.+|.+|+++.+++-...+.+-+..+..+++.+... ++.... ..++. ..+...+ ..++...+-
T Consensus 129 ~i~ll~~~~~in~~gvk~~~~~~~v~t~~kli~i~~i~i~g~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~f 202 (445)
T PRK10644 129 CVVVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVS------GLGTFGAIQSTLNVTLW 202 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999998875403676455777878------88746899999999999
Q ss_pred HHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHH-HHHHHHCCH----HHHHHHH----HHHCCCCHHHHHHHHH
Q ss_conf 851087874364546711--6999999999999999974-786873592----4552036----8727863289999999
Q gi|254780832|r 232 TITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLG-QGALVLSNP----EAIKDPF----YMMFGGWFLPFAVLTA 300 (628)
Q Consensus 232 a~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~G-q~a~ll~~~----~~~~~~f----~~~~p~~~~~~~v~~a 300 (628)
+..|-|.+.+--+..+.| ++-.|.........+.|.. +.+....-| ...+.|+ ....++|.-..+.+.+
T Consensus 203 af~G~e~~~~~a~E~knP~k~IPrAii~~i~iv~vlYvl~~~~~~g~vp~~~l~~~~~p~~~~~~~~~g~~~~~ii~~~~ 282 (445)
T PRK10644 203 SFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCA 282 (445)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989999999998838366888999999999999999999999950579885536777999999973689999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf 9999996030100258999999975998865687038876571100689999999988877732--68889887899999
Q gi|254780832|r 301 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGF--RHSESLVAAYGISV 378 (628)
Q Consensus 301 t~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f--~~s~~L~~aYgi~V 378 (628)
.++..-...+.+.+.-++..++.++|.+|+. +.+++++ .+=.+.+.....++++.++... ..+.....+..+++
T Consensus 283 ~is~~~~~~~~~~~~sR~~yamardg~lP~~-f~k~nk~---~~P~~all~~~~i~~l~~l~~~~~~~~~~f~~l~~~~~ 358 (445)
T PRK10644 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPI-FARVNKA---GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSV 358 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999868995599-9965989---99658999999999999999864426779999999999
Q ss_pred HH---HHHHHHHHHHHHHHHH
Q ss_conf 99---9999899999999983
Q gi|254780832|r 379 SG---TMVISTIMFSVFVHVC 396 (628)
Q Consensus 379 ~~---tf~lTt~l~~~~~~~~ 396 (628)
+. .+.++. ....++|++
T Consensus 359 ~~~l~~y~~~~-~~~~~lr~~ 378 (445)
T PRK10644 359 IFTLVPYLYTC-AALLLLGHG 378 (445)
T ss_pred HHHHHHHHHHH-HHHHHHHHH
T ss_conf 99999999999-999999861
No 6
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.60 E-value=8.6e-10 Score=81.41 Aligned_cols=356 Identities=17% Similarity=0.178 Sum_probs=195.9
Q ss_pred CCHHHHHCCC-CHHH-HHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf 6224432042-0599-98973230457367667899999714777777778993462048889899999999----9999
Q gi|254780832|r 4 QTEDLQKNSP-NPFY-LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVV----TIKY 77 (628)
Q Consensus 4 ~~~~~~~~~~-~~~~-l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv----~vKY 77 (628)
..++++++++ ..+. +.....|.+-| +..+......... . +..++. |-+..+. ..-|
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~----~gif~~~~~~~~~-----------~--~~~~~~-~l~~~~~~~~~a~~~ 65 (466)
T COG0531 4 SMMSSELKKKLGLFDLLTALGVGSMIG----SGIFALPGSAAGL-----------A--PAAILA-WLIAGIIILFLALSY 65 (466)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-----------H--HHHHHH-HHHHHHHHHHHHHHH
T ss_conf 214366532322699999999999999----9999999999988-----------6--899999-999999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---C---CCH
Q ss_conf 9887410789981389999999872675542577899999999965003469999999872466427366---7---612
Q gi|254780832|r 78 ILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPEL---D---NFI 151 (628)
Q Consensus 78 v~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l---~---~~~ 151 (628)
..+. .-...+||. |+-.+|..+++.. .+.+-..+.+|+..++....+..+.+....|.. . -+.
T Consensus 66 ~el~--~~~p~aGG~---y~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (466)
T COG0531 66 AELS--SAIPSAGGA---YAYAKRALGPRLG------FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLI 134 (466)
T ss_pred HHHH--HHCCCCCCH---HHHHHHHCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 9999--638888839---9999987397429------9999999999999999999999999999806410102343899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 8999999999997500018999998459999999999999998650187444-467968999999837435899998999
Q gi|254780832|r 152 ILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGIL-AAFNPMYALHMVFGKGTISLVVLGSVF 230 (628)
Q Consensus 152 v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl-~a~~P~~~~~~~~~~~~~g~~~lg~v~ 230 (628)
..++++++.+++.+|.+|++.++++....+.+=+..+..+.+.++.+.+... ...++... .......-+..+..++
T Consensus 135 ~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 211 (466)
T COG0531 135 ILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP---GGGSFGGILAAILLAF 211 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHH
T ss_conf 9999999999999999519999999999999999999999999999954544543555455---6661999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHH-HHHHHCCH--HHHH----HHHH----HHCCCCHHHHHH
Q ss_conf 9851087874364546711--69999999999999999747-86873592--4552----0368----727863289999
Q gi|254780832|r 231 LTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQ-GALVLSNP--EAIK----DPFY----MMFGGWFLPFAV 297 (628)
Q Consensus 231 La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq-~a~ll~~~--~~~~----~~f~----~~~p~~~~~~~v 297 (628)
.+.+|.|++.+--+..+.| ++..+...........|... .+....-+ +... +|+. ...+.+....+.
T Consensus 212 ~~f~G~e~~~~~aeE~k~p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~ 291 (466)
T COG0531 212 FAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIA 291 (466)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 99972988976489872903227899999999999999999999998177998844476662899999855079999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCC----CHHHHHHH
Q ss_conf 99999999960301002589999999759988656870388765711006899999999888777326----88898878
Q gi|254780832|r 298 LTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFR----HSESLVAA 373 (628)
Q Consensus 298 ~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~----~s~~L~~a 373 (628)
+.+..+..-...+...+.-+...+..++|++|+ .+.+.+++.+ .-.+.+.....++. .+...+. +-+.+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~-~~~~~~~~~~--~P~~a~~~~~ii~~-~l~~~~~~~~~~~~~l~~~ 367 (466)
T COG0531 292 ILALLSLFGSLLAWILAVSRVLYAMARDGLLPK-FFAKVNPKGR--TPVIALILTGIISL-ILLLLFPLSSIAFNALVSL 367 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHCCCCC--CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999986699779-9998577888--45999999999999-9999987467789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999989999999998
Q gi|254780832|r 374 YGISVSGTMVISTIMFSVFVHV 395 (628)
Q Consensus 374 Ygi~V~~tf~lTt~l~~~~~~~ 395 (628)
-..+-...+.++........++
T Consensus 368 ~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 368 ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999874
No 7
>PRK11021 inner membrane protein YjeH; Provisional
Probab=99.59 E-value=8.2e-10 Score=81.51 Aligned_cols=294 Identities=20% Similarity=0.177 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 048889899999999----9999988741078998138999999987267554257789999999996500346999999
Q gi|254780832|r 59 IGLVSLMIWVLTIVV----TIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVL 134 (628)
Q Consensus 59 ~G~lSli~Wtl~liv----~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVl 134 (628)
-|--+++=|.+.-+. ..-|..+.-+ ...+||. |.-.+|..++. .|...+-.++..+.+..+..+.
T Consensus 30 aG~~~ilaw~i~~i~~~~~al~~aeLa~~--~P~aGG~---y~y~~~afG~~------~Gf~~gw~~~~~~~~~~~a~~~ 98 (410)
T PRK11021 30 AGNGSLWAWPLLIILIFPIALVFARLGRH--FPHAGGP---AHFVGMAFGPR------LGRVIGWLFLSVIPVGLPAALL 98 (410)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCH---HHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58799999999999999999999999975--7899879---99999996945------7999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 98724664273667612899999999999750001899999845999999999999999865018744446796899999
Q gi|254780832|r 135 SAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHM 214 (628)
Q Consensus 135 Savegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~ 214 (628)
.+...+....|.-......+++.++.+++.+|.||+++++++--..+.+-+..+......+..+ +.... ..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ln~~gi~~~~~i~~~~~~~~v~~v~~~~~~~~~~-~~~~~-~~~~----- 171 (410)
T PRK11021 99 IAAGFGQALFPWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIK-PADIP-FPAP----- 171 (410)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC-CCCC-----
T ss_conf 9999999875865258999999999999999999999999999999999999989876315566-45577-7787-----
Q ss_pred HHHCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHH
Q ss_conf 98374358-999989999851087874364546711--69999999999999999747868735---------9245520
Q gi|254780832|r 215 VFGKGTIS-LVVLGSVFLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQGALVLS---------NPEAIKD 282 (628)
Q Consensus 215 ~~~~~~~g-~~~lg~v~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~a~ll~---------~~~~~~~ 282 (628)
...+..+ +.+++-.+-|..|-|++.+--+.+++| .+-.|.........+-|+....-.+. +......
T Consensus 172 -~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~lY~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (410)
T PRK11021 172 -GNIEWPGLMAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPG 250 (410)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHH
T ss_conf -7886789999999999999819999888998608411198999999999999999999999970573532146751999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHH
Q ss_conf 36872786328999999999999960301-00258999999975998865687038876571100689999999988877
Q gi|254780832|r 283 PFYMMFGGWFLPFAVLTATCATVIASQAV-ITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFV 361 (628)
Q Consensus 283 ~f~~~~p~~~~~~~v~~at~a~iIaSqa~-isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lv 361 (628)
.+....+++..+.+...+..+. .++-+. +.+.-++.....++|.+|+. +-++++| ++=.+.+.....+..+.++
T Consensus 251 ~~~~~~G~~~~~ii~~~~i~s~-~~s~~~~~~~~sR~~~amardG~lP~~-f~k~n~~---g~P~~al~~~~~~~~~~~~ 325 (410)
T PRK11021 251 IFVQLFGGYALWVICVIGYLAC-FASVNIYTQSFARLVWSQARQGIPPHY-LARLSAR---GVPLNALNAVLGVCAVSIL 325 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCC---CCCHHHHHHHHHHHHHHHH
T ss_conf 9999710779999999999999-999999999999999999838996789-9713919---9975899999999999999
Q ss_pred HHCCCHHHHHHHHHH
Q ss_conf 732688898878999
Q gi|254780832|r 362 IGFRHSESLVAAYGI 376 (628)
Q Consensus 362 l~f~~s~~L~~aYgi 376 (628)
+.+-...++..+...
T Consensus 326 ~~~~~~~~~~~li~~ 340 (410)
T PRK11021 326 LIYALGLNLEALIAY 340 (410)
T ss_pred HHHHHHCCHHHHHHH
T ss_conf 998706319999999
No 8
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.52 E-value=3.9e-09 Score=77.15 Aligned_cols=422 Identities=13% Similarity=0.102 Sum_probs=210.2
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9876224432042059998973230457367667899999714777777778993462048889899999-999999998
Q gi|254780832|r 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLT-IVVTIKYIL 79 (628)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~-liv~vKYv~ 79 (628)
|+++++=+++ -....+..-++|.+ |||.=...-....+.+++ . -.+|.++-.+. +.+..-|..
T Consensus 1 ~~~~~~LkR~--L~~~~l~~i~iG~~---IGsGif~~~g~a~~~aGp--------~---~~la~~i~gi~~~~~~l~~aE 64 (457)
T PRK10580 1 MESKNKLKRG--LSTRHIRFMALGSA---IGTGLFYGSADAIKMAGP--------S---VLLAYIIGGVAAYIIMRALGE 64 (457)
T ss_pred CCCCCCCCCC--CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCH--------H---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987645588--97889899999989---988899988999997285--------9---999999999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 87410789981389999999872675542577899999999965003469999999872466427366761289999999
Q gi|254780832|r 80 LLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGIL 159 (628)
Q Consensus 80 ~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il 159 (628)
+.-+-.. .||. |+-.++..+ -..|.+.+-.+..+|.++++..+.+....++..+|.+.++.. ++.++
T Consensus 65 l~~~~P~--~Gg~---~~y~~~~~G------~~~gf~~GW~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~--~~~~~ 131 (457)
T PRK10580 65 MSVHNPA--ASSF---SRYAQENLG------PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIW--VLSVV 131 (457)
T ss_pred HHHHCCC--CCCH---HHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHH
T ss_conf 9987799--7649---999999869------198999999999999999999999999999985675217999--99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHH-----HHHCCHHHH-HHHHHHHHH
Q ss_conf 9999750001899999845999999999999999865018-744446796899999-----983743589-999899998
Q gi|254780832|r 160 VLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDD-WGILAAFNPMYALHM-----VFGKGTISL-VVLGSVFLT 232 (628)
Q Consensus 160 ~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~-p~vl~a~~P~~~~~~-----~~~~~~~g~-~~lg~v~La 232 (628)
++++.+|.+|++..|++=-..+.+=+..+..+.+.++... ........|....++ +..++..|+ .++..++-+
T Consensus 132 ~~~~~iNl~gv~~~g~~~~~~~~~kv~~ii~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~fa 211 (457)
T PRK10580 132 LIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFA 211 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999989999999999999999999999998785267615878888763235678998864478999999999999
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH---C--CHHHHHHHHH----HHCCCCHHHHHHHHHH
Q ss_conf 510878743645467116--999999999999999974786873---5--9245520368----7278632899999999
Q gi|254780832|r 233 ITGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGALVL---S--NPEAIKDPFY----MMFGGWFLPFAVLTAT 301 (628)
Q Consensus 233 ~TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll---~--~~~~~~~~f~----~~~p~~~~~~~v~~at 301 (628)
.+|.|.+..--+--+.|. +-.|.........+-|.+...... . +.+..+.||- ....++.-..+-..+.
T Consensus 212 f~G~e~i~~~a~E~knP~r~iP~Ai~~~~~~v~v~Yi~~~~~~~~~~p~~~~~~~~sP~~~a~~~~g~~~~~~ii~~~~l 291 (457)
T PRK10580 212 YGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVL 291 (457)
T ss_pred HCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 82899999998862086667999999999999999999999997206776516667859999998086389999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHH--HHHHHHHHCCCH----HHHHHHHH
Q ss_conf 999996030100258999999975998865687038876571100689999999--988877732688----89887899
Q gi|254780832|r 302 CATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFV--GVLLFVIGFRHS----ESLVAAYG 375 (628)
Q Consensus 302 ~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~i--a~i~lvl~f~~s----~~L~~aYg 375 (628)
++.+-+.++.+.+.-+++....++|.+|+. +.++++|+ .|.+..+... ..+.+.+.+... +.+.++.+
T Consensus 292 ~s~~s~~n~~~~~~sR~l~~ma~~G~lP~~-f~~~~~~g-----~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 365 (457)
T PRK10580 292 TASLSAINSDVFGVGRMLHGMAEQGSAPKI-FSKTSRRG-----IPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLAT 365 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHCCCCC-----CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 997758899999989999999848985789-87549999-----848699999999999999984272249999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999998999999999835---------8569999999999999999999999985234869999999999999999
Q gi|254780832|r 376 ISVSGTMVISTIMFSVFVHVCW---------KWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWT 446 (628)
Q Consensus 376 i~V~~tf~lTt~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~ 446 (628)
++...++.+...-....+|+.. |.|.. ......++ +...++. ...-+...-++.+.++...+.+.+.
T Consensus 366 ~~~l~~~~~i~~s~i~~Rr~~~~~~~~~~~fk~P~~-~~~~~~~~--~~~~~v~-~~~~~~~~~~~~~~~~~~~~i~~~~ 441 (457)
T PRK10580 366 FATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGG-VATTIGGL--IFLVFII-GLIGYHPDTRISLYVGFAWIVLLLI 441 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHH--HHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999858312366898887784-69999999--9999999-9998571699999999999999999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 899999999986424
Q gi|254780832|r 447 WRRGTNLLSTLTRHA 461 (628)
Q Consensus 447 W~~G~~~~~~~~~~~ 461 (628)
-++=+++..|+..|+
T Consensus 442 ~y~~~~r~~r~~~~~ 456 (457)
T PRK10580 442 GWMFKRRHDRQLAEN 456 (457)
T ss_pred HHHHHCCCCCHHHCC
T ss_conf 998611022222023
No 9
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.52 E-value=7.3e-10 Score=81.86 Aligned_cols=423 Identities=13% Similarity=0.107 Sum_probs=213.7
Q ss_pred CCCCCHHHHHCCCCH-HHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 987622443204205-999897323045736766789999971477777777899346204888989999-999999999
Q gi|254780832|r 1 MNTQTEDLQKNSPNP-FYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVL-TIVVTIKYI 78 (628)
Q Consensus 1 m~~~~~~~~~~~~~~-~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl-~liv~vKYv 78 (628)
|+.|+++.+-+|..+ .-+.+-++| |-|||.=...-.+..+.++ +. -.+|.++-.+ .+.+..-|.
T Consensus 1 ~~~~~~~~~LkR~L~~r~l~~i~iG---~~IGtGiF~~~g~~~~~aG--------P~---~ila~~i~g~~~~~~~~~~a 66 (456)
T PRK10238 1 MEGQQHGEQLKRGLKNRHIQLIALG---GAIGTGLFLGSASVIQSAG--------PG---IILGYAIAGFIAFLIMRQLG 66 (456)
T ss_pred CCCCCCCHHCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHCC--------HH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 9998885010587978788999999---7999999999899998749--------59---99999999999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 88741078998138999999987267554257789999999996500346999999987246642736676128999999
Q gi|254780832|r 79 LLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGI 158 (628)
Q Consensus 79 ~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~i 158 (628)
.++-+-+. .||. |.-.+|..++ ..|.+.+=....+|+++++....+....++.-.|++..+. .+..+
T Consensus 67 El~~~~P~--~Gg~---~~y~~~~~G~------~~gF~~GW~~w~~~~~~~~~~~~a~~~~l~~~~p~~p~~~--~~~~~ 133 (456)
T PRK10238 67 EMVVEEPV--AGSF---SHFAYKYWGS------FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWV--SAAVF 133 (456)
T ss_pred HHHHHCCC--CCCH---HHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHH
T ss_conf 99987789--8878---9989999093------9999999999999999999999999999988335454889--99999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCHHHH-HHHHHHHHHH
Q ss_conf 999997500018999998---45999999999999999865018-744446796899999983743589-9998999985
Q gi|254780832|r 159 LVLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISDD-WGILAAFNPMYALHMVFGKGTISL-VVLGSVFLTI 233 (628)
Q Consensus 159 l~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~~-p~vl~a~~P~~~~~~~~~~~~~g~-~~lg~v~La~ 233 (628)
+++++.+|.+|++..|+. |.-+..+-+..+...|.+-+... +.............-+..++..|+ .++..++-+.
T Consensus 134 ~~~i~~inl~gv~~~g~~e~~~~~iKv~~iv~~ii~g~~~~~~~~~~~~~~~~~~~~~g~f~p~G~~gi~~~~~~~~faf 213 (456)
T PRK10238 134 FVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSF 213 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999860899999999999999999999999899705346899877754677899888777206999999999984
Q ss_pred HHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHC-CH----HHHHHHHHHHC----CCCHHHHHHHHHHH
Q ss_conf 10878743645467116--9999999999999999747868735-92----45520368727----86328999999999
Q gi|254780832|r 234 TGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGALVLS-NP----EAIKDPFYMMF----GGWFLPFAVLTATC 302 (628)
Q Consensus 234 TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll~-~~----~~~~~~f~~~~----p~~~~~~~v~~at~ 302 (628)
+|.|.+..--+--+.|. +-.|...+.....+-|.+....+.. .| +..+.||-..+ .++.-..+-..+..
T Consensus 214 ~G~e~i~~~A~E~knP~k~iP~Ai~~~~~~i~i~Yv~~~~~~~~~~p~~~~~~~~sPfv~~~~~~G~~~~~~ii~~~~l~ 293 (456)
T PRK10238 214 GGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLT 293 (456)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 13999999999832856589999999999999999999999995087464254555599999994837899999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHH-CCCH---HHHHHHHHHHH
Q ss_conf 9999603010025899999997599886568703887657110068999999998887773-2688---89887899999
Q gi|254780832|r 303 ATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIG-FRHS---ESLVAAYGISV 378 (628)
Q Consensus 303 a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~-f~~s---~~L~~aYgi~V 378 (628)
+.+=+.++.+.+.-+++....++|.+||. +.++++|+. =.+.+..-..++.+...+. +... +.|.+.-+.+.
T Consensus 294 s~~s~~n~~~~~~sR~l~amA~~g~~Pk~-f~k~~k~g~---P~~ail~~~~~~~l~~l~~~~~~~~~f~~l~~~~~~~~ 369 (456)
T PRK10238 294 AALSVYNSCVYCNSRMLFGLAQQGNAPKA-LASVDKRGV---PVNTILVSALVTALCVLINYLAPESAFGLLMALVVSAL 369 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999868996789-886293999---67699999999999999994272789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC--CC-HHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999999998358--56-999----999999999999999999998523486999999999999999989999
Q gi|254780832|r 379 SGTMVISTIMFSVFVHVCWK--WK-ISK----VIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGT 451 (628)
Q Consensus 379 ~~tf~lTt~l~~~~~~~~~~--~~-~~~----~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~ 451 (628)
..++.+...-..+.+|.+.+ .+ ..+ -........ ....+....-+..+-.+.+.+.++.+.++..-++=+
T Consensus 370 l~~w~~i~~a~i~~Rr~~~~~~~~~~~~~~~~P~~~~~~l~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 446 (456)
T PRK10238 370 VINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLL---FMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFK 446 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 99999999999999864264699988987886638999999---999999999977438999999999999997887325
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780832|r 452 NLLSTL 457 (628)
Q Consensus 452 ~~~~~~ 457 (628)
+++.|.
T Consensus 447 ~k~~~~ 452 (456)
T PRK10238 447 EKTAKA 452 (456)
T ss_pred EECCCC
T ss_conf 503543
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.51 E-value=5.1e-09 Score=76.42 Aligned_cols=386 Identities=14% Similarity=0.145 Sum_probs=186.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 676678999997147777777789934620488898999999999----9999887410789981389999999872675
Q gi|254780832|r 30 IGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVT----IKYILLLLRADNDGEGGILSLLALLLKKIPK 105 (628)
Q Consensus 30 IGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~----vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~ 105 (628)
||+. .+.+...... .|-.|++=|-+.-+.. .-|..+..+- ..+||..+ |+ ++ .+
T Consensus 21 IGsG-If~lp~~~a~--------------~G~~~i~awii~gi~al~~al~~aeLa~~~--P~~GG~y~-Ya--~~-~~- 78 (435)
T PRK10435 21 MGSG-IALLPANLAS--------------IGGIAIWGWIISIIGAMSLAYVYARLATKN--PQQGGPIA-YA--GE-IS- 78 (435)
T ss_pred HHHH-HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH-HH--HH-HH-
T ss_conf 8408-9985999998--------------877999999999999999999999999758--88883999-99--99-99-
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54257789999999-9965003469999999872466427366761--28999999999997500018999998459999
Q gi|254780832|r 106 RSTVLIALGLAGSA-LFIGDSMVTPALSVLSAVEGVRYIAPELDNF--IILIALGILVLLFMLQSHGTKGVACFFSPIMV 182 (628)
Q Consensus 106 ~~~~~~~~gligaa-~ll~D~iLTpAISVlSavegl~~~~P~l~~~--~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~ 182 (628)
+. .|-..+- ......+-++|+.+ .+++.+...+|.+.+. ....+++++.++..+|.+|.++++++...-+.
T Consensus 79 -~~----~Gf~~g~~~~~~~~i~~~a~av-~~~~yl~~f~p~~~~~~~~~i~~i~~i~~~~~in~~G~~~~~~i~~i~~i 152 (435)
T PRK10435 79 -PA----FGFQTGVLYYHANWIGNLAIGI-TAVSYLSTFFPVLNNPIPAGIACIAIVWLFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred -HH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -99----9999999999999999999999-99999999987567837999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCC-CCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHH
Q ss_conf 9999999999986501-8744446-79689999998374358-9999899998510878743645467116--9999999
Q gi|254780832|r 183 AWLLMITVSGLIHISD-DWGILAA-FNPMYALHMVFGKGTIS-LVVLGSVFLTITGAEALYADLGHFGRKP--IQYAWMV 257 (628)
Q Consensus 183 lwf~~i~~~gi~~i~~-~p~vl~a-~~P~~~~~~~~~~~~~g-~~~lg~v~La~TG~EAl~advghF~~~~--i~~aw~~ 257 (628)
+-+..+.+..+.+... +++.+.+ .++.- .+...+ ..+...++-|..|.|.+..--+..++|. +-.|...
T Consensus 153 ~~li~ii~~~i~g~~~~~~~~~~~~~~~~~------~~~~~~i~~a~~~~~faf~G~E~~~~~a~EvknP~r~iP~Aii~ 226 (435)
T PRK10435 153 LVLIPVVGTAIVGWHWFDAATYAANWNTSD------TTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 999999999999985146333567767788------76489999999999999805999986899851867678999999
Q ss_pred HHHHHHHHHHHHHHHHH---CCHH--HHHHHH----HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999999974786873---5924--552036----87278632899999999999996030100258999999975998
Q gi|254780832|r 258 IFPALAINYLGQGALVL---SNPE--AIKDPF----YMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFL 328 (628)
Q Consensus 258 v~~~L~l~y~Gq~a~ll---~~~~--~~~~~f----~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~ 328 (628)
......+.|..-...+. .+.+ ..+.|| ..+.++|.-+.+-..+.++.+-+..+.+...-++...+.++|.+
T Consensus 227 g~~iv~vlYil~~~v~~g~~p~~~la~s~~P~a~a~~~~~g~~~~~ii~~~~~is~l~s~n~~~l~~sr~~~a~A~dG~~ 306 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISTSTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNF 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998737799974667879999998486669999999999999999999999988999999867996
Q ss_pred CCEEEEECCCCCCCCEECHHHHHHHHHHHHH--HHHH-CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHH
Q ss_conf 8656870388765711006899999999888--7773-268889887899999999999899---999999983585699
Q gi|254780832|r 329 PRMKIFFTSETFKGQVFLPSINLFLFVGVLL--FVIG-FRHSESLVAAYGISVSGTMVISTI---MFSVFVHVCWKWKIS 402 (628)
Q Consensus 329 Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~--lvl~-f~~s~~L~~aYgi~V~~tf~lTt~---l~~~~~~~~~~~~~~ 402 (628)
|+. +.++++++. =.+++.....+.+++ ++.. ...+.++..+|..-+.++-.++-. ......++..+...+
T Consensus 307 Pk~-f~k~nk~g~---P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 382 (435)
T PRK10435 307 PKV-YGEVDKNGI---PKKGLLLAAVKMTALMILITIMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGVNIR 382 (435)
T ss_pred CHH-HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 689-996588999---7478999999999999999998402232999999999999999999999999999985023444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999852348699999999999999998999999999864
Q gi|254780832|r 403 KVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTR 459 (628)
Q Consensus 403 ~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~~~~~ 459 (628)
.... .....+..+|....+ ..-+|..+....++..+- .-.|+||.-+|+.+
T Consensus 383 ~~~~--~i~~~l~~~~~~~~l---~~~~~~~~~~~~i~~l~~-~~~Y~rk~~~~~~~ 433 (435)
T PRK10435 383 NFVS--LICSVLGCVFCFIAL---MGASSFELTGTFIVSLII-LMFYARKMHERQSH 433 (435)
T ss_pred CCHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
T ss_conf 5099--999999999999999---985799999999999999-99999987422234
No 11
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.47 E-value=5.7e-09 Score=76.10 Aligned_cols=328 Identities=14% Similarity=0.148 Sum_probs=165.1
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7367667899999714777777778993462048889899999999----999998874107899813899999998726
Q gi|254780832|r 28 GDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVV----TIKYILLLLRADNDGEGGILSLLALLLKKI 103 (628)
Q Consensus 28 GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv----~vKYv~~~l~adn~GEGGi~aL~sl~~~~~ 103 (628)
+-||+.-...-.......++ ..++++-|.+.-+. ..-|..+.-+-+. .||. |.-++|..
T Consensus 22 ~~IGsGIF~~~g~~~~~~g~------------~~~~~~a~~~~g~~~~~~al~yaELas~~P~--sGG~---y~y~~~~~ 84 (445)
T PRK11357 22 TTVGSGIFVSVGEVAKAAGT------------PWLTVLAFVIGGLIVIPQMCVYAELSTAYPE--NGAD---YVYLKNAG 84 (445)
T ss_pred HHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCH---HHHHHHHH
T ss_conf 99999999999999998670------------8999999999999999999999999977689--8809---99999995
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 755425778999999-9996500346999999987246642736676128999999999997500018999998459999
Q gi|254780832|r 104 PKRSTVLIALGLAGS-ALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMV 182 (628)
Q Consensus 104 ~~~~~~~~~~gliga-a~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~ 182 (628)
++. .|.+.+ +.+...+..+.++-...-.+.+....|........++.++++.++.+|.+|+++.++.-...+.
T Consensus 85 g~~------~gf~~gW~~~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~gv~~~~~~~~~~tv 158 (445)
T PRK11357 85 SRP------LAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITI 158 (445)
T ss_pred CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 728------99999999999999999999999999999886876517899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHH
Q ss_conf 9999999999986501-874444679689999998374358-9999899998510878743645467116--99999999
Q gi|254780832|r 183 AWLLMITVSGLIHISD-DWGILAAFNPMYALHMVFGKGTIS-LVVLGSVFLTITGAEALYADLGHFGRKP--IQYAWMVI 258 (628)
Q Consensus 183 lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~~~~~~g-~~~lg~v~La~TG~EAl~advghF~~~~--i~~aw~~v 258 (628)
.=+..+..+.+.+++. +++.+.+.... ......+..+ +.++..++-+.+|-|++..--+-.+.|. +-.|....
T Consensus 159 ~kl~~l~iii~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~af~G~e~i~~~a~E~knP~r~iPrAii~s 235 (445)
T PRK11357 159 AKIIPFTIVIGLGIFWFKAENFAAPTTT---AIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999999999998176557787666---7887542999999999999999839999867988658140499999999
Q ss_pred HHHHHHHHHHHHHHH--HCCHHHH---HHHH----H--HHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999997478687--3592455---2036----8--727863289999999999999603010025899999997599
Q gi|254780832|r 259 FPALAINYLGQGALV--LSNPEAI---KDPF----Y--MMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGF 327 (628)
Q Consensus 259 ~~~L~l~y~Gq~a~l--l~~~~~~---~~~f----~--~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~ 327 (628)
.....+.|..-.... ....+.. +.|+ . ...+++.-+.+.+.+.++.+=..++.+.+.-++.....++|.
T Consensus 236 i~iv~v~Yil~~~~~~~~~p~~~l~~~~~~~~~a~~~~~~~g~~~~~~i~i~a~is~~g~~n~~i~~~sR~~yamardg~ 315 (445)
T PRK11357 236 CLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNL 315 (445)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999579998657777089999999986579999999999999999999987867899999984898
Q ss_pred CCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88656870388765711006899999999888777326888988789999999999989
Q gi|254780832|r 328 LPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVIST 386 (628)
Q Consensus 328 ~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt 386 (628)
+|+. +-+.+.|. -.|....++.....++.+..++-+.|+....+.....+.++-
T Consensus 316 lp~~-f~~vh~r~----~tP~~aii~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 369 (445)
T PRK11357 316 FFKC-FGHVHPKY----NTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTF 369 (445)
T ss_pred HHHH-HHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1599-87439997----997899999999999999997899999999999999999999
No 12
>PRK10655 potE putrescine transporter; Provisional
Probab=99.47 E-value=1e-08 Score=74.49 Aligned_cols=369 Identities=13% Similarity=0.090 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48889899999999----99999887410789981389999999872675542577899999999965003469999999
Q gi|254780832|r 60 GLVSLMIWVLTIVV----TIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLS 135 (628)
Q Consensus 60 G~lSli~Wtl~liv----~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlS 135 (628)
|..|++-|-+.-+. ..-|..+..+ ...+||. |.-+++..++...+ +.+-.....+++.++.-..+
T Consensus 37 G~~siiawii~gi~~~~~al~~aEL~~~--~P~~GG~---y~Y~~~afG~~~gF------~~gw~~~~~~~~~~~a~a~~ 105 (438)
T PRK10655 37 GTISILSWLVTAVGSMALAYAFAKCGMF--SRKSGGM---GGYAEYAFGKSGNF------MANYTYGVSLLIANVAIAIS 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCH---HHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHHH
T ss_conf 4899999999999999999999999712--8998729---99999995941589------99999999999999999999
Q ss_pred HHHHHHHHCCCC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCC-CCCHHHH
Q ss_conf 872466427366-76128-999999999997500018999998459999999999999998650-1874444-6796899
Q gi|254780832|r 136 AVEGVRYIAPEL-DNFII-LIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHIS-DDWGILA-AFNPMYA 211 (628)
Q Consensus 136 avegl~~~~P~l-~~~~v-~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~-~~p~vl~-a~~P~~~ 211 (628)
+++.+...+|.. .+... ..++.++.+.+.+|.+|+|..+++=...+..-+..+..+++.+.. .+++... ..+|...
T Consensus 106 ~~~y~~~~~~~~~~~~~~~~~~i~~l~l~~~in~~g~~~~~~i~~i~~~~~ii~l~~~~i~g~~~~~~~~~~~~~~p~~~ 185 (438)
T PRK10655 106 AVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLCIIGWFWFSPTLYVAAWNPHHL 185 (438)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999998165663899999999999999999999999999999999999999999999999987076534577898777
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHH-HHHHC--CH------HHH
Q ss_conf 99998374358999989999851087874364546711--699999999999999997478-68735--92------455
Q gi|254780832|r 212 LHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQG-ALVLS--NP------EAI 280 (628)
Q Consensus 212 ~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~-a~ll~--~~------~~~ 280 (628)
.++ ..-..++..++-|..|-|.+..--+..++| ++-.|.........+.|.... +.... .. +..
T Consensus 186 -~~~----~~i~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrAii~~~~iv~vlYil~~~~~~~~vp~~~la~s~~p~ 260 (438)
T PRK10655 186 -PFF----EAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNAELANSTAPF 260 (438)
T ss_pred -CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHH
T ss_conf -408----999999999999997199999999987581867999999999999999999999999845899873678679
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHH
Q ss_conf 20368727863289999999999999603010025899999997599886568703887657110068999999998887
Q gi|254780832|r 281 KDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF 360 (628)
Q Consensus 281 ~~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~l 360 (628)
...+....++|.-..+...+.+...=...+.+.+.-++...+.++|.+||. +.++++++ .=.+.+.....+++++.
T Consensus 261 a~~~~~~~g~~~~~ii~~~~~is~~gs~~~~~~~~sR~~~a~A~dG~lPk~-f~k~nk~g---~P~~all~~~vi~~~l~ 336 (438)
T PRK10655 261 GLAFAQMFNPTVGKVVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKI-FSRVTKVD---APVQGMLIIVVIQSLLS 336 (438)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCCC---CCHHHHHHHHHHHHHHH
T ss_conf 999999772779999999999999999999999989999999867985599-99659899---97799999999999999
Q ss_pred HHHC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HH--HHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 7732-68----88988789999999999989999999998358569--99--9999999999999999999985234869
Q gi|254780832|r 361 VIGF-RH----SESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKI--SK--VIIFLFPLLSIEMTFLGANLFKVLDGGY 431 (628)
Q Consensus 361 vl~f-~~----s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~~~~~Kf~~GgW 431 (628)
...+ .+ -+.|...-.++....+.++.. ....+|++.+.+. .+ ..+..++++. ..+ =...=||
T Consensus 337 l~~~~~~~~~~~~~l~~~~~~~~l~~Y~~~~~-~l~~lr~~~~~~~~~~~~~~ii~~l~~~~--~~~------~i~~~g~ 407 (438)
T PRK10655 337 LMTISPSLNSQFNVLVNLAVVTNIIPYILSMA-ALVIIQKVANVPPSKAKVANFIAFVGALY--SFY------ALYSSGE 407 (438)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHH--HHH------HHHHHHH
T ss_conf 99955003569999999999999999999999-99999984678876674205999999999--999------9999729
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999989999999998
Q gi|254780832|r 432 TPLLIASLCIIVMWTWRRGTNLLSTL 457 (628)
Q Consensus 432 ~~lli~~il~~iM~~W~~G~~~~~~~ 457 (628)
-.++.+.+++.+=...+.=-+++++.
T Consensus 408 ~~~~~~~i~~~iG~~~Y~~~~~k~~~ 433 (438)
T PRK10655 408 EAMLYGSIVTFLGWTLYGLISPRFEL 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999788764
No 13
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.47 E-value=1e-08 Score=74.39 Aligned_cols=419 Identities=17% Similarity=0.132 Sum_probs=198.7
Q ss_pred CCCHHHHHCCCC-HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHHHHHH-HHHHHHHHHH
Q ss_conf 762244320420-5999897323045736766789999971477777777899346204-888989999-9999999998
Q gi|254780832|r 3 TQTEDLQKNSPN-PFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG-LVSLMIWVL-TIVVTIKYIL 79 (628)
Q Consensus 3 ~~~~~~~~~~~~-~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G-~lSli~Wtl-~liv~vKYv~ 79 (628)
.++|+.|=+|.. ...+..-++|- =|||.-...-.......++ .| .+|.++-.+ .+.+-.-|..
T Consensus 5 ~~~~~~~LkR~L~~~~~~~i~vG~---~IGsGiF~~~g~~~~~aGp-----------~~~lla~~i~gi~~~~~al~~aE 70 (465)
T PRK11387 5 SSQQAPQFKRTMKVRHLVMLSLGG---VIGTGLFFNTGYIISTTGA-----------LGTLLAYLIGALVVYLVMQCLGE 70 (465)
T ss_pred CCCCCHHCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888860115859788999999998---9998999998999998696-----------99999999999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 87410789981389999999872675542577899999999965003469999999872466427366761289999999
Q gi|254780832|r 80 LLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGIL 159 (628)
Q Consensus 80 ~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il 159 (628)
+.-+-.. .||. |.-.+|..++. .|.+.+-....++++.++....++...++.-.|....+ +.++..+
T Consensus 71 Las~~P~--~Gg~---y~y~~~~~G~~------~GF~~Gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~--~~~~~~~ 137 (465)
T PRK11387 71 LAVAMPE--TGAF---HVYAARYLGPA------TGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQSPVW--PWCLLFC 137 (465)
T ss_pred HHHHCCC--CCCH---HHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHH
T ss_conf 9987699--8858---99999993916------79999999999999999999999999999865766088--9999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH-----HHCCHHH-HHHHHHHH
Q ss_conf 999975000189999---98459999999999999998650187444467968999999-----8374358-99998999
Q gi|254780832|r 160 VLLFMLQSHGTKGVA---CFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMV-----FGKGTIS-LVVLGSVF 230 (628)
Q Consensus 160 ~~Lf~iq~rGt~~~g---~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~-----~~~~~~g-~~~lg~v~ 230 (628)
++++.+|..|++..+ ..|..+..+-+.....++...+.... .....+|....+.. ..++..+ +.++..++
T Consensus 138 ~~i~~ln~~~~~~~~~~~~~~~iikv~~i~~~ii~~~~~i~~~~-~~~~~~~~~~~~~~~~~g~~~~g~~~i~~~~~~~~ 216 (465)
T PRK11387 138 ALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAVFGLL-PMADGSPAPGLRNLTAEGWFPHGTLPILMTMVAVN 216 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999757767899999999999999999999999999997125-45678888652457778876555899999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHH----HCCCCHHHHHHHH
Q ss_conf 98510878743645467116--999999999999999974786873-----592455203687----2786328999999
Q gi|254780832|r 231 LTITGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGALVL-----SNPEAIKDPFYM----MFGGWFLPFAVLT 299 (628)
Q Consensus 231 La~TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~~~~~~~f~~----~~p~~~~~~~v~~ 299 (628)
-+.+|.|.+..--+.-+.|. +-.|..........-|.+...... ++.+..+.|+-. ...++.-..+-..
T Consensus 217 faf~G~e~i~~~A~E~knP~r~iPrAi~~~~~~i~v~Yv~~~~~~~~~vp~~~~~~~~sp~~~a~~~~g~~~~~~ii~~~ 296 (465)
T PRK11387 217 FAFSGTELIGIAAGETENPAKVIPLAIRTTLARLVVFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKLGIPYAADIFNFV 296 (465)
T ss_pred HHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99716699999999971867689999999999999999999999996467010267688599999993966799999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCH-H---HHHHHHH
Q ss_conf 99999996030100258999999975998865687038876571100689999999988877732688-8---9887899
Q gi|254780832|r 300 ATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHS-E---SLVAAYG 375 (628)
Q Consensus 300 at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s-~---~L~~aYg 375 (628)
+..+.+-+.++.+.+.-++.....++|.+|+. +.++++| .+=.+.+......+.+.+.....+. + .+..+.+
T Consensus 297 ~l~s~~s~~ns~~~~~SR~lyamardG~lP~~-f~k~~k~---g~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 372 (465)
T PRK11387 297 ILTAILSAANSGLYASGRMLWSLANEGTLPAG-FARLTKR---GIPLTALSVSMLGGLLALLTSVYAPDTVFVALSAISG 372 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCC---CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999889999999889999998837972789-8863959---9969899999999999999982167899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999998999999999835------------8569999999999999999999999985234869999999999999
Q gi|254780832|r 376 ISVSGTMVISTIMFSVFVHVCW------------KWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIV 443 (628)
Q Consensus 376 i~V~~tf~lTt~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~i 443 (628)
.+........... ...+|+++ |-+..- ....++++ -.+++..++ -+...-.+.+.++..++.+
T Consensus 373 ~~~~~~~~~i~~~-~~~~R~~~~~~~~~~~~~~fr~p~~P-~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~i~~~~l 447 (465)
T PRK11387 373 FAVVVVWLSICAS-HYVFRRQHLRDGKALSELAYRAPWYP-WTPILGFV--LCLLACVGL-AFDPQQRIALWCGIPFVAL 447 (465)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-99999999876999677987228944-99999999--999999998-7548899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999899999999986
Q gi|254780832|r 444 MWTWRRGTNLLSTLT 458 (628)
Q Consensus 444 M~~W~~G~~~~~~~~ 458 (628)
.+.+++=+++..+++
T Consensus 448 ~~~~y~~~~R~~~rr 462 (465)
T PRK11387 448 CYGAYALTQRLAARR 462 (465)
T ss_pred HHHHHHHHEECHHCC
T ss_conf 999998612521124
No 14
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.28 E-value=1.5e-07 Score=66.98 Aligned_cols=298 Identities=15% Similarity=0.121 Sum_probs=152.1
Q ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 59998973230457367667899999714777777778993462048889899999999999998874107899813899
Q gi|254780832|r 15 PFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILS 94 (628)
Q Consensus 15 ~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~a 94 (628)
..-+.+-++|-+ |||.=...-......++ +.-++. -++-..+.+.+..-|..+..+-...| |.
T Consensus 24 ~~~l~~i~iG~~---IGtGiF~~~g~a~~~aG--------P~~ll~--~~i~g~i~~~~~~~~aEl~~~~P~~G--~~-- 86 (469)
T PRK11049 24 NRHIQLIAIGGA---IGTGLFMGSGKTISLAG--------PSIIFV--YMIIGFMLFFVMRAMGELLLSNLEYK--SF-- 86 (469)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHC--------HHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCC--CH--
T ss_conf 889999999989---99999999899999859--------599999--99999999999999999998668877--49--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999872675542577899999999965003469999999872466427366761289999999999975000189999
Q gi|254780832|r 95 LLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVA 174 (628)
Q Consensus 95 L~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g 174 (628)
|+-..|-.++ ..|.+.+=.....|+++++..+.+....++.-.|++.++.. ++.++++++.+|..|++..|
T Consensus 87 -~~y~~~~~G~------~~Gf~~GW~~~~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~--~~~~~~~~~~inl~~v~~~g 157 (469)
T PRK11049 87 -SDFASDLLGP------WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVA--SLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred -HHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999684------89999999999999999999999999999983586517899--99999999999999999999
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHC---CCCCCC-CCCHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98---4599999999999999986501---874444-6796899999983743589-99989999851087874364546
Q gi|254780832|r 175 CF---FSPIMVAWLLMITVSGLIHISD---DWGILA-AFNPMYALHMVFGKGTISL-VVLGSVFLTITGAEALYADLGHF 246 (628)
Q Consensus 175 ~~---F~pi~~lwf~~i~~~gi~~i~~---~p~vl~-a~~P~~~~~~~~~~~~~g~-~~lg~v~La~TG~EAl~advghF 246 (628)
+. |+-+..+.+..+...|+.-+.. .|.... .+.+.....-+..++..|+ .++..++-|.+|.|.+..--+..
T Consensus 158 ~~e~~~~~iKi~~i~~~ii~g~~~~~~~~~~p~~~~~~~~~~~~~~g~~p~G~~g~~~a~~~~~faf~G~e~i~~~A~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGISGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999999999999999985046788877676544577898786545899999999999943789999999995
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHH-CCH----HHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 7116--999999999999999974786873-592----455203687----278632899999999999996030-1002
Q gi|254780832|r 247 GRKP--IQYAWMVIFPALAINYLGQGALVL-SNP----EAIKDPFYM----MFGGWFLPFAVLTATCATVIASQA-VITG 314 (628)
Q Consensus 247 ~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll-~~~----~~~~~~f~~----~~p~~~~~~~v~~at~a~iIaSqa-~isg 314 (628)
+.|. +-.+...+.....+.|......+. ..| ...+.||-. ...++.-. .+-+..+..++.+.| .+.+
T Consensus 238 knP~r~iP~ai~~~~~~i~i~Yv~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~-ii~~~~l~s~~s~~n~~~~~ 316 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAAS-VINFVVLTSAASSANSGVFS 316 (469)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 18765699999999999999999999999710677652777672999999929806999-99999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 58999999975998865687038876
Q gi|254780832|r 315 TFSLARQAIHLGFLPRMKIFFTSETF 340 (628)
Q Consensus 315 ~Fsl~~qai~l~~~Pr~~i~~tS~~~ 340 (628)
.-+++....++|++||. +.++++|+
T Consensus 317 ~sR~lyamar~G~lP~~-f~~~~k~g 341 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKA-FAKLSKRA 341 (469)
T ss_pred HHHHHHHHHCCCCCCHH-HHHCCCCC
T ss_conf 99999998708997789-87549999
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=99.05 E-value=1.9e-06 Score=59.80 Aligned_cols=415 Identities=14% Similarity=0.107 Sum_probs=196.5
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9876224432042059998973230457367667899999714777777778993462048889899999-999999998
Q gi|254780832|r 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLT-IVVTIKYIL 79 (628)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~-liv~vKYv~ 79 (628)
|++|+++.|++-+ +..+.+-++| |=|||.=...-.+....++ +. -.+|.++-.+. +.+..-|..
T Consensus 1 m~~~~~~L~R~L~-~~~l~miaiG---~~IGtGlF~~~g~a~~~aG--------Pa---~lisy~i~gi~~~~~~~~~aE 65 (461)
T PRK10746 1 MADNKPELQRGLE-ARHIELIALG---GTIGVGLFMGAASTLKWAG--------PS---VLLAYIIAGLFVFFIMRSMGE 65 (461)
T ss_pred CCCCCHHHCCCCC-HHHHHHHHHH---HHHHHHHHHHHHHHHHHCC--------HH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998633307896-8899999999---9999889998899998729--------89---999999999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 87410789981389999999872675542577899999999965003469999999872466427366761289999999
Q gi|254780832|r 80 LLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGIL 159 (628)
Q Consensus 80 ~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il 159 (628)
++-+-... ||. .-|+ .|..++ ..|.+.+-.....++.+.+..+......++.-+|++..+.. ++..+
T Consensus 66 la~~~P~~--Gg~-~~ya--~~~~g~------~~Gf~~GW~yw~~~~~~~~~~~~a~~~~~~~~~p~~~~~~~--~~i~~ 132 (461)
T PRK10746 66 MLFLEPVT--GSF-AVYA--HRYMSP------FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIP--ALIAV 132 (461)
T ss_pred HHHHCCCC--CCH-HHHH--HHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHH
T ss_conf 99877898--878-9999--999395------99999999999999999999999999999886365548899--99999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----C--CCCCCCCCCHHHHHHHHHHCCHHHH-HHHHHH
Q ss_conf 99997500018999998---459999999999999998650----1--8744446796899999983743589-999899
Q gi|254780832|r 160 VLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHIS----D--DWGILAAFNPMYALHMVFGKGTISL-VVLGSV 229 (628)
Q Consensus 160 ~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~----~--~p~vl~a~~P~~~~~~~~~~~~~g~-~~lg~v 229 (628)
.++..+|..|++..|.. |+-+-...+..+..+|+.-+. . ++..+....++ .-+..++..|+ .++..+
T Consensus 133 ~~~~~~Nl~~v~~~g~~e~~~~~iKv~~i~~~ii~gl~~i~~g~~~~~~~~~~~~~~~~---g~f~p~g~~g~~~a~~~~ 209 (461)
T PRK10746 133 ALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEH---GGFFAGGWKGFLTALCIV 209 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHH
T ss_conf 99999999888999999999999999999999999883378855888888874557768---887777628899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHCC----CCHHHHHHH
Q ss_conf 99851087874364546711--69999999999999999747868735-----92455203687278----632899999
Q gi|254780832|r 230 FLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQGALVLS-----NPEAIKDPFYMMFG----GWFLPFAVL 298 (628)
Q Consensus 230 ~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~a~ll~-----~~~~~~~~f~~~~p----~~~~~~~v~ 298 (628)
+-+.+|.|.+..--+--+.| ++..|...+...+.+.|.+....+.. +....+.||-.... ++.-..+-.
T Consensus 210 ~fsf~G~E~v~~~A~E~knP~r~iP~Ai~~~~~~i~v~Yi~~~~~~~~~vP~~~~~~~~sPfv~a~~~~g~~~~~~iin~ 289 (461)
T PRK10746 210 VASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINF 289 (461)
T ss_pred HHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99982569999999984184545899999999999999999999990345756678889959999998698368999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHH--HH--HCCCHH-HHHHH
Q ss_conf 99999999603010025899999997599886568703887657110068999999998887--77--326888-98878
Q gi|254780832|r 299 TATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF--VI--GFRHSE-SLVAA 373 (628)
Q Consensus 299 ~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~l--vl--~f~~s~-~L~~a 373 (628)
.+..+.+-+.++...++-+++....++|.+|+. +.++++++ .|-...+....+.++ .+ ...+.+ -..-+
T Consensus 290 ~il~a~~s~~ns~~y~~sR~l~alA~~g~~P~~-f~k~n~~g-----vP~~ai~~s~~~~l~~~~l~~~~~~~~~vf~~l 363 (461)
T PRK10746 290 VVLTAALSGCNSGMYSCGRMLYALAKNRQLPAA-MAKVSRHG-----VPVAGVAVSILILLVGSCLNYIIPNPQRVFVYV 363 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999988878999999631787877737960678-76608899-----849999999999999999998358888999999
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHCCC-----CHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999---99999899999999983585-----699---9999999999999999999998523486999999999999
Q gi|254780832|r 374 YGISVS---GTMVISTIMFSVFVHVCWKW-----KIS---KVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCII 442 (628)
Q Consensus 374 Ygi~V~---~tf~lTt~l~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~ 442 (628)
..+.++ .+..+...-.. ..|+.+|. +.+ .-.....+.. ...++....-+....|+.+.++.+.+.
T Consensus 364 ~~~~~~~~~~~w~~i~is~i-~frr~~~~~~~~~pfk~p~~P~~~~~~i~---~~~~vl~~~~~~~~~~~~~~~~~~~~~ 439 (461)
T PRK10746 364 YSASVLPGMVPWFVILISQL-RFRRAHKAAIASHPFRSILFPWANYLTMA---FLICVLIGMYFNEDTRMSLFVGIIFLL 439 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999-99996140166899888883479999999---999999999938779999999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99998999999999
Q gi|254780832|r 443 VMWTWRRGTNLLST 456 (628)
Q Consensus 443 iM~~W~~G~~~~~~ 456 (628)
+.+..++-.+++++
T Consensus 440 ~~~~~y~~~~~~r~ 453 (461)
T PRK10746 440 AVTAIYKVFGLNRH 453 (461)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998600225
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.02 E-value=2.4e-06 Score=59.08 Aligned_cols=342 Identities=13% Similarity=0.121 Sum_probs=177.8
Q ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 5999897323045736766789999971477777777899346204888989999-999999999887410789981389
Q gi|254780832|r 15 PFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVL-TIVVTIKYILLLLRADNDGEGGIL 93 (628)
Q Consensus 15 ~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl-~liv~vKYv~~~l~adn~GEGGi~ 93 (628)
+..+.+-++|-+ |||.=.-.--+..+.+++ . -.+|.++-.+ .+.+..-|..++-+-.. .||.
T Consensus 25 ~r~l~mi~iG~~---IGtGiF~~~G~a~~~aGP--------a---~lla~~i~gi~~~~~~~~~aEla~~~P~--sGg~- 87 (458)
T PRK10249 25 NRHIQLIALGGA---IGTGLFLGIGPAIQMAGP--------A---VLLGYGVAGIIAFLIMRQLGEMVVEEPV--SGSF- 87 (458)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHCCC--------H---HHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCH-
T ss_conf 899999999999---999999998899987394--------9---9999999999999999999999986789--8878-
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987267554257789999999996500346999999987246642736676128999999999997500018999
Q gi|254780832|r 94 SLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGV 173 (628)
Q Consensus 94 aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~ 173 (628)
|.-..|..++ ..|-+.+=.....++++.+.....+...++.-.|+...+. .+..++++++.+|..|++..
T Consensus 88 --~~y~~~~~g~------~~GF~~GW~~w~~~~~~~~~~~~a~~~~~~~~~p~~p~~i--~~~~~~~~l~~in~~~v~~~ 157 (458)
T PRK10249 88 --AHFAYKYWGP------FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWI--WAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred --HHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf --9989999490------9899999999999999999999999999987558861999--99999999999999868999
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 998---4599999999999999986501-8744446796899999983743589-9998999985108787436454671
Q gi|254780832|r 174 ACF---FSPIMVAWLLMITVSGLIHISD-DWGILAAFNPMYALHMVFGKGTISL-VVLGSVFLTITGAEALYADLGHFGR 248 (628)
Q Consensus 174 g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~~~~~~g~-~~lg~v~La~TG~EAl~advghF~~ 248 (628)
|+. |+-+-.+-+..+..+|++-+.. ++.......+.+...-+..++..|+ .++..++-+..|.|.+..--+--+.
T Consensus 158 g~~e~~~~~iKv~~ii~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~gi~~a~~~~~faf~G~e~i~~~A~E~kn 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99999999999999999999788437715887778865566689977888428999999999997168999999999758
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 1--6999999999999999974786873-----592455203687----2786328999999999999960301002589
Q gi|254780832|r 249 K--PIQYAWMVIFPALAINYLGQGALVL-----SNPEAIKDPFYM----MFGGWFLPFAVLTATCATVIASQAVITGTFS 317 (628)
Q Consensus 249 ~--~i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~~~~~~~f~~----~~p~~~~~~~v~~at~a~iIaSqa~isg~Fs 317 (628)
| ++-.|.........+-|.+....+. .+.+..+.||-. ...++.-..+-..+.++.+-+.++.+.+.-+
T Consensus 238 P~k~iPrAi~~~~~~i~~~Yi~~~~~~~~~vp~~~~~~~~sP~v~a~~~~g~~~~~~ii~~~ilis~~s~~ns~i~~~sR 317 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76489999999999999999999999995267101267888799999981963899999999999999999999999889
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975998865687038876571100689999999988877732688----89887899999999999899
Q gi|254780832|r 318 LARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHS----ESLVAAYGISVSGTMVISTI 387 (628)
Q Consensus 318 l~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s----~~L~~aYgi~V~~tf~lTt~ 387 (628)
++....++|.+|+. +.++++|+ +=.+.+.....++++.....+-.. +.|.++-+.+...+......
T Consensus 318 ~l~amA~~G~~Pk~-f~k~~~~g---vP~~ail~~~~~~~l~~~~~~~~~~~~f~~l~~~~~~~~l~~w~~i~~ 387 (458)
T PRK10249 318 MLFGLSVQGNAPKF-LTRVSRRG---VPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICL 387 (458)
T ss_pred HHHHHHHCCCCCHH-HHHCCCCC---CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999867998889-85349699---968899999999999999970168899999999999999999999999
No 17
>pfam00324 AA_permease Amino acid permease.
Probab=98.88 E-value=7.8e-06 Score=55.79 Aligned_cols=317 Identities=16% Similarity=0.109 Sum_probs=147.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889899-9999999999988741078998138999999987267554257789999999996500346999999987246
Q gi|254780832|r 62 VSLMIW-VLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGV 140 (628)
Q Consensus 62 lSli~W-tl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl 140 (628)
++.++. .+.+.+..-|..++-+-+ -.||. |....|..+++ .|-..+-....-++.+.|.....+..-+
T Consensus 33 ~~~~i~~~~~~~~~~s~aElas~~P--~sGg~---y~~~~~~~g~~------~gf~~gw~~~~~~~~~~a~~~~~~~~~~ 101 (473)
T pfam00324 33 LGYLIAGVVIFLTMLSLGEMSTNGP--VAGGF---YAYASRFLGPS------LGFATGWNYWLSWIFVIALELTAASILI 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCH---HHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998678--97759---99999996909------9999999999999999999999999999
Q ss_pred HHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC--CCCCCC-CCHHHHHH
Q ss_conf 6427366761-28999999999997500018999998---45999999999999999865018--744446-79689999
Q gi|254780832|r 141 RYIAPELDNF-IILIALGILVLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISDD--WGILAA-FNPMYALH 213 (628)
Q Consensus 141 ~~~~P~l~~~-~v~iai~il~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~~--p~vl~a-~~P~~~~~ 213 (628)
....+..+.. .-......+.++..+|..|++..++. +..+..+-.......++...... +..... .++.....
T Consensus 102 ~~~~~~~~~~~~~~~~~i~~~i~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (473)
T pfam00324 102 QFWELVPDIPYLWVWGAVFIVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFIIPLSGGGPNDGAYLGYNGGKNN 181 (473)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98752577418899999999999999999999999999999999999999999999999981466666654257766445
Q ss_pred HH------HHCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHH-----HCCHHH
Q ss_conf 99------8374358-9999899998510878743645467116--99999999999999997478687-----359245
Q gi|254780832|r 214 MV------FGKGTIS-LVVLGSVFLTITGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGALV-----LSNPEA 279 (628)
Q Consensus 214 ~~------~~~~~~g-~~~lg~v~La~TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~l-----l~~~~~ 279 (628)
+. ......+ +.++...+.+.+|.|+..+--+--+.|. +-.+.........+.|......+ -.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~knP~r~iP~ai~~~~~~~~~~yil~~~~~~~~~p~~~~~~ 261 (473)
T pfam00324 182 FPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGL 261 (473)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 77666677775489999999999999985999999999852856699999999999999999999999981206311211
Q ss_pred H------HHHHH---H-HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHH
Q ss_conf 5------20368---7-278632899999999999996030100258999999975998865687038876571100689
Q gi|254780832|r 280 I------KDPFY---M-MFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSI 349 (628)
Q Consensus 280 ~------~~~f~---~-~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~I 349 (628)
. ..|+. . ...++.-..+......+.+-+.++...+.-+++....++|.+|+. +.+++++ .+=.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~s~~~~~~~~~sR~l~a~Ardg~lP~~-f~~~~k~---~~P~~Av 337 (473)
T pfam00324 262 LADSASAASPFVIFFKSLGISGLAPLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKF-LKKVDKS---GVPLRAI 337 (473)
T ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHCCCCC---CCCHHHH
T ss_conf 01345557699999999484599999979999999999999999999999999808998688-8507999---9979999
Q ss_pred HHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988877732688----89887899999999999899999999
Q gi|254780832|r 350 NLFLFVGVLLFVIGFRHS----ESLVAAYGISVSGTMVISTIMFSVFV 393 (628)
Q Consensus 350 n~ll~ia~i~lvl~f~~s----~~L~~aYgi~V~~tf~lTt~l~~~~~ 393 (628)
..-..++++...+..-++ +.+.++++++-..+..+...-..+++
T Consensus 338 l~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~i~~R 385 (473)
T pfam00324 338 LLSTAISLLAVLLASLNPAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385 (473)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986379999999999999999999999999989998
No 18
>PRK10836 lysine transporter; Provisional
Probab=98.65 E-value=4.2e-05 Score=51.07 Aligned_cols=338 Identities=17% Similarity=0.150 Sum_probs=168.1
Q ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 59998973230457367667899999714777777778993462048889899999-99999999887410789981389
Q gi|254780832|r 15 PFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLT-IVVTIKYILLLLRADNDGEGGIL 93 (628)
Q Consensus 15 ~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~-liv~vKYv~~~l~adn~GEGGi~ 93 (628)
...+.+-++|- =|||.=...--......++ . --.+|.++..+. +.+..-|..++-+-+.. ||..
T Consensus 19 ~r~l~mi~iG~---~IGtGiFv~~G~~~~~aGP--------~--~~lia~~i~Gi~~~~~~~s~aEla~~~P~s--Gg~~ 83 (489)
T PRK10836 19 ARHLTMIAIGG---SIGTGLFVASGATISQAGP--------G--GALLSYMLIGLMVYFLMTSLGELAAYMPVS--GSFA 83 (489)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHCC--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH
T ss_conf 88999999999---9987899998999999794--------9--999999999999999999999999767898--7699
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987267554257789999999996500346999999987246642736676128-99999999999750001899
Q gi|254780832|r 94 SLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFII-LIALGILVLLFMLQSHGTKG 172 (628)
Q Consensus 94 aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v-~iai~il~~Lf~iq~rGt~~ 172 (628)
+ | ..|-.+ -..|...+-.....++++.|..+..+..-++.-.|+..++.. .+.++++.++..++-|+.+|
T Consensus 84 ~-y--a~~~~g------~~~GF~~GW~yw~~~~~~~a~e~~a~~~~~~~w~p~~~~~i~~~i~l~~i~~lN~~~V~~~g~ 154 (489)
T PRK10836 84 T-Y--GQNYVE------EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGE 154 (489)
T ss_pred H-H--HHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-9--999957------499999999999999999999999999999984488838999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCCCCHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99984599999999999999986501-----87444467968999999837435899-9989999851087874364546
Q gi|254780832|r 173 VACFFSPIMVAWLLMITVSGLIHISD-----DWGILAAFNPMYALHMVFGKGTISLV-VLGSVFLTITGAEALYADLGHF 246 (628)
Q Consensus 173 ~g~~F~pi~~lwf~~i~~~gi~~i~~-----~p~vl~a~~P~~~~~~~~~~~~~g~~-~lg~v~La~TG~EAl~advghF 246 (628)
+...|.-+..+-+....++++.-+.. ++..+...++. .-...++..++. +....+-+..|.|.+..--+..
T Consensus 155 ~e~~~s~iKv~~ii~~ii~~i~~~~g~~~~~~~~g~~~~~~~---~~pf~~g~~g~~~~~~~~~Fsf~G~E~v~~~AgE~ 231 (489)
T PRK10836 155 AEYWFSLIKVTTVIIFIIVGVLMIIGIFKGAEPAGWSNWTIG---DAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999999999999999997377789877775555568---89887648999999999999833299999999985
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHHHHHHH-----CCHH--------HHHHHHHHHCC----CCHHHHHHHHHHHHHHHH
Q ss_conf 711--6999999999999999974786873-----5924--------55203687278----632899999999999996
Q gi|254780832|r 247 GRK--PIQYAWMVIFPALAINYLGQGALVL-----SNPE--------AIKDPFYMMFG----GWFLPFAVLTATCATVIA 307 (628)
Q Consensus 247 ~~~--~i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~~--------~~~~~f~~~~p----~~~~~~~v~~at~a~iIa 307 (628)
+.| ++-.|...+..-..+.|.+....+. .||+ ..+.||-.... ++.-..+-.....+.+=+
T Consensus 232 knP~k~iPrAi~~~~~ri~~~Yil~~~~v~~lvp~~~~~l~~~~~~~~~~SPfv~a~~~~Gi~~~~~iin~~il~s~~S~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 28165689999999999999999999999412136774431267665334579999998190879999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHH
Q ss_conf 03010025899999997599886568703887657110068999999998887773268889----88789999999999
Q gi|254780832|r 308 SQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSES----LVAAYGISVSGTMV 383 (628)
Q Consensus 308 Sqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~----L~~aYgi~V~~tf~ 383 (628)
.++.+.++-+++....++|.+||. +.++++++. =.+.+..-..++++.......+.+. |.+.-+++.+++..
T Consensus 312 ~ns~ly~~SR~lyama~~G~~P~~-f~~~~k~gv---P~~A~~~t~~~~~l~~l~~~~~~~~vf~~l~~~~~~~~~~~w~ 387 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRI-FAKLSRGGV---PRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWL 387 (489)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHH-HHHCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999898787899998717986789-884198998---0999999999999999997478079999999999999999999
No 19
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.62 E-value=5.1e-05 Score=50.53 Aligned_cols=305 Identities=12% Similarity=0.028 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 999999999999988741078998138999999987267554257789999999996500346999999987246-----
Q gi|254780832|r 66 IWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGV----- 140 (628)
Q Consensus 66 ~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl----- 140 (628)
-....+.+.+-|..++=+...- ||. |.-..|..++.-.| +.+-....+++.+.|-.-.+....+
T Consensus 56 ~~~~~~~valslAELaS~~P~a--GG~---Y~w~~~~a~~~~g~------~~GW~~~~~~~~~~a~~~~~~~~~l~~~~~ 124 (475)
T TIGR03428 56 VFVGQLLVALNFAELAARYPIS--GAI---YQWSRRMGGEVIGW------FAGWFMIIAQIVTAAAAAIALQVVLPNIWS 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--CHH---HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999877797--539---99999985118799------999999999999999999999999999997
Q ss_pred --HHH--CCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf --642--7366-----7612899999999999750001899999845999999999999999865018744446796899
Q gi|254780832|r 141 --RYI--APEL-----DNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYA 211 (628)
Q Consensus 141 --~~~--~P~l-----~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~ 211 (628)
+.. .|.+ .-+.+.+..+++++...+|.+|+|...++-..-+.+-+..+....+.-....+ -+|...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~in~~g~r~l~~~~~~~~~~~~~~~~~vi~~l~~~~~-----~~~~~~ 199 (475)
T TIGR03428 125 GFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ-----RGPGVV 199 (475)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEE
T ss_conf 655406775435775317799999999999999999759999999999999999987864433530356-----787612
Q ss_pred HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH------HHHHHHH--H--HHHHHHHHHHHHH--HHH
Q ss_conf 9999837-----43589999899998510878743645467116------9999999--9--9999999974786--873
Q gi|254780832|r 212 LHMVFGK-----GTISLVVLGSVFLTITGAEALYADLGHFGRKP------IQYAWMV--I--FPALAINYLGQGA--LVL 274 (628)
Q Consensus 212 ~~~~~~~-----~~~g~~~lg~v~La~TG~EAl~advghF~~~~------i~~aw~~--v--~~~L~l~y~Gq~a--~ll 274 (628)
.++.... +..-+.++-..+-+++|-|+...--.--+.|. |..+... + +..++...+.... ...
T Consensus 200 ~~~~~~~~~~~~~~a~~~g~l~~~~~~~G~Da~~h~aEE~~np~r~vPraii~sv~i~~v~g~~~~i~~l~~~~~~~~~~ 279 (475)
T TIGR03428 200 FDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGR 279 (475)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 03688899997289999999999999942778887688851851000299999999999999999999999704355420
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCC-EEEEECCCCCCCCEECHHHHHHH
Q ss_conf 59245520368727863289999999999999603010025899999997599886-56870388765711006899999
Q gi|254780832|r 275 SNPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPR-MKIFFTSETFKGQVFLPSINLFL 353 (628)
Q Consensus 275 ~~~~~~~~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr-~~i~~tS~~~~gqiYip~In~ll 353 (628)
..++.....+....+...-..+.....++....+.+...+.=+++-...|||.+|= ..+.+.++| .|+=+|.+....
T Consensus 280 ~~~~~~p~i~~~~~g~~~~~~~~~~i~i~~~~~~~~~~~a~SR~~~AfARDg~LPfS~~~~~V~pr--~~~Pv~A~~~~~ 357 (475)
T TIGR03428 280 LAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR--TGTPILPSIVIG 357 (475)
T ss_pred CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCC--CCCCHHHHHHHH
T ss_conf 477646999999705088999999999999999999999866876220158998731454124999--998498999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 99988877732688898878999---999999998999
Q gi|254780832|r 354 FVGVLLFVIGFRHSESLVAAYGI---SVSGTMVISTIM 388 (628)
Q Consensus 354 ~ia~i~lvl~f~~s~~L~~aYgi---~V~~tf~lTt~l 388 (628)
.+++++-.+..+|++..-...+. +-..++.+.+..
T Consensus 358 ~~~~~lgli~lgS~~Af~ai~s~~~~~l~~sy~~~~~~ 395 (475)
T TIGR03428 358 VLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVP 395 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987439999999999999999999999999
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.57 E-value=6.9e-05 Score=49.66 Aligned_cols=289 Identities=12% Similarity=0.044 Sum_probs=153.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88989999-99999999988741078998138999999987267554257789999999996500346999999987246
Q gi|254780832|r 62 VSLMIWVL-TIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGV 140 (628)
Q Consensus 62 lSli~Wtl-~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl 140 (628)
+|-++-.+ .+.+..-|..++-+-... ||. .-| ..|..++ ..|-..+=...-.++++.+.....+...+
T Consensus 29 lay~i~Gi~~~~~~~~laEla~~~P~~--Gs~-~~y--a~~~~g~------~~GF~~GW~yw~~~~~~~~~e~~a~~~~~ 97 (446)
T PRK10197 29 LAYLFAGLLVVMIMRMLAEMAVATPDT--GSF-STY--ADKAIGR------WAGYTIGWLYWWFWVLVIPLEANIAAMIL 97 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCH-HHH--HHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999876999--868-999--9999194------99999999999999999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCCC-CCCCCHHHHHHHH
Q ss_conf 642736676128999999999997500018999998---4599999999999999986501-8744-4467968999999
Q gi|254780832|r 141 RYIAPELDNFIILIALGILVLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISD-DWGI-LAAFNPMYALHMV 215 (628)
Q Consensus 141 ~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~v-l~a~~P~~~~~~~ 215 (628)
+.-.|+...+. .++.+++.+..+|..|++..|.. |+-+-.+-+.....+|+.-+.. .|.. .....+.....-+
T Consensus 98 ~~w~p~~p~~~--~~~~~~~~l~~lNl~~v~~~ge~e~~~s~iKv~~ii~fii~g~~~i~g~~p~~~~~g~~~~~~~g~f 175 (446)
T PRK10197 98 HSWVPGIPIWL--FSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGF 175 (446)
T ss_pred HHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 77326640799--9999999999999987899999999999999999999999999998078888887761224668887
Q ss_pred HHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHH-HHHHH-
Q ss_conf 83743589-99989999851087874364546711--6999999999999999974786873-----592455-20368-
Q gi|254780832|r 216 FGKGTISL-VVLGSVFLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQGALVL-----SNPEAI-KDPFY- 285 (628)
Q Consensus 216 ~~~~~~g~-~~lg~v~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~~~~-~~~f~- 285 (628)
..++..|+ .++..++-+..|.|.+..--+-.+.| ++..|...+.....+.|.+....+. .+++.. ..||-
T Consensus 176 ~p~G~~g~~~a~~~~~faf~G~E~i~~~AgE~knP~k~iPrAi~~~~~ri~ifYil~~~vi~~~vP~~~~~l~~~s~~~~ 255 (446)
T PRK10197 176 MPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRS 255 (446)
T ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 64357999999999999982799999999985183547999999999999999999999997744666644456682899
Q ss_pred ---HHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHH
Q ss_conf ---72786328999999999999960301002589999999759988656870388765711006899999999888777
Q gi|254780832|r 286 ---MMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVI 362 (628)
Q Consensus 286 ---~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl 362 (628)
...-++.-..+-..+..+.+-+.++.+.++-+++....++|..||. +.++++++ +=.+.+..-..++.+.++.
T Consensus 256 ~~~~~gi~~~~~iin~vil~s~~Sa~Ns~iy~~SR~lyalA~~G~aPk~-f~k~nk~g---vP~~avl~s~~~~~l~~~~ 331 (446)
T PRK10197 256 VLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAV-MGKINRSK---TPYVAVLLSTGAAFLTVVV 331 (446)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf 9998586468999999999999999999999999999999808975689-87649999---9699999999999999999
Q ss_pred HCCCH
Q ss_conf 32688
Q gi|254780832|r 363 GFRHS 367 (628)
Q Consensus 363 ~f~~s 367 (628)
...+.
T Consensus 332 ~~~~~ 336 (446)
T PRK10197 332 NYYAP 336 (446)
T ss_pred HCCCH
T ss_conf 83277
No 21
>KOG1286 consensus
Probab=98.48 E-value=0.00012 Score=48.14 Aligned_cols=341 Identities=14% Similarity=0.094 Sum_probs=181.4
Q ss_pred HHHHHHHHCCCEECCCCCCHHHHH-HHHHCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 599989732304573676678999-99714777777778993462048889899-9999999999988741078998138
Q gi|254780832|r 15 PFYLMFESIGVVYGDIGTSVLYAF-KEALKTTTMNHTLLVERTEVIGLVSLMIW-VLTIVVTIKYILLLLRADNDGEGGI 92 (628)
Q Consensus 15 ~~~l~~~alGvV~GDIGTSPLY~~-~~~~~~~~~~~~~~~~~~~v~G~lSli~W-tl~liv~vKYv~~~l~adn~GEGGi 92 (628)
+.-+..-++| |-|||- ||+. -+.+...++ +. =++|.++. ...+.+...|..+..|-+.+ +|.
T Consensus 34 ~rhl~miaiG---g~IGtG-l~V~sG~~l~~~gp-----~s-----~iisf~i~g~~~~~~~~~~~E~~~~~P~~--aGs 97 (554)
T KOG1286 34 TRHLQMLAIG---GTIGTG-LFVGTGSALRNGGP-----PS-----LLISFIIAGIAALLSALCLGEFAVRFPVS--AGS 97 (554)
T ss_pred HHHHHHHHHC---CEEECC-EEEEECHHHHHCCC-----CH-----HHHHHHHHHHHHHHHHHHHHHHHEECCCC--CCC
T ss_conf 6454440003---403255-78850588762698-----04-----88999999999999999998785006656--664
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HCCCCCCCHHHHHHHHHH
Q ss_conf 99999998726755425778999999999650034699999998724664------------273667612899999999
Q gi|254780832|r 93 LSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRY------------IAPELDNFIILIALGILV 160 (628)
Q Consensus 93 ~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~------------~~P~l~~~~v~iai~il~ 160 (628)
+..|+- +..--..|...+-...-||+++.|-=..+...-++. ..|....+.+.+++.+++
T Consensus 98 ~~~ya~--------~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~i 169 (554)
T KOG1286 98 FYTYAY--------RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILII 169 (554)
T ss_pred CEEEEE--------EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 115553--------121817999999999999998535999999999999743443334456687775177999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHH
Q ss_conf 9997500-01899999845999999999999999865018----74444679689999998374358-999989999851
Q gi|254780832|r 161 LLFMLQS-HGTKGVACFFSPIMVAWLLMITVSGLIHISDD----WGILAAFNPMYALHMVFGKGTIS-LVVLGSVFLTIT 234 (628)
Q Consensus 161 ~Lf~iq~-rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~----p~vl~a~~P~~~~~~~~~~~~~g-~~~lg~v~La~T 234 (628)
.+|.+-- -|++++....-..+.+=|..++.+...|-.++ +...+-..+ ..-+.+.+..| +.++...+.+.+
T Consensus 170 n~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~---~g~F~p~gf~Gv~s~~~~~~fsf~ 246 (554)
T KOG1286 170 NLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHD---PGAFFPFGFKGVLSGAATAFFSFI 246 (554)
T ss_pred HHHHHHHCCCEEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf 99877622225546799999999999986303666887677677867401378---888678771556298898999884
Q ss_pred HHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH-----CCH-----HHHHHHHH-HHCCCCHHH---HHHH
Q ss_conf 08787436454671--16999999999999999974786873-----592-----45520368-727863289---9999
Q gi|254780832|r 235 GAEALYADLGHFGR--KPIQYAWMVIFPALAINYLGQGALVL-----SNP-----EAIKDPFY-MMFGGWFLP---FAVL 298 (628)
Q Consensus 235 G~EAl~advghF~~--~~i~~aw~~v~~~L~l~y~Gq~a~ll-----~~~-----~~~~~~f~-~~~p~~~~~---~~v~ 298 (628)
|.|.+..--+--+. +.|-.|....+--..+.|++-...+. .+| ...+.||. ...-.+..+ .+-+
T Consensus 247 G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna 326 (554)
T KOG1286 247 GFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNA 326 (554)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHH
T ss_conf 19999988773159744565888999999999999998976578337860238677651389999845675215005459
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCH----HHHHHHH
Q ss_conf 999999996030100258999999975998865687038876571100689999999988877732688----8988789
Q gi|254780832|r 299 TATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHS----ESLVAAY 374 (628)
Q Consensus 299 ~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s----~~L~~aY 374 (628)
.+.++..-+.....++..+.+....++|..|+. +.+.+++ |.=| +.+......++++-.....+. +.|.+..
T Consensus 327 ~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~-f~~v~~~--g~P~-~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~ 402 (554)
T KOG1286 327 GILIGLLSSLNSSLYAGSRVLYALAKDGLAPKF-FARVDRR--GVPL-VAVLVSGLFGALAALNFSLGAATVFNWLVNLS 402 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHCCCC--CCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999998777768999999966996568-7540878--9704-66899999999999995246325899999997
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999989
Q gi|254780832|r 375 GISVSGTMVIST 386 (628)
Q Consensus 375 gi~V~~tf~lTt 386 (628)
+++-+.+.++-.
T Consensus 403 si~tl~~w~~i~ 414 (554)
T KOG1286 403 SIGTLFAWTLVA 414 (554)
T ss_pred HHHHHHHHHHHH
T ss_conf 599999999999
No 22
>KOG1287 consensus
Probab=98.19 E-value=0.00055 Score=43.86 Aligned_cols=398 Identities=15% Similarity=0.088 Sum_probs=194.6
Q ss_pred HHHHCCCEEC-CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCHHH
Q ss_conf 8973230457-36766789999971477777777899346204888989999999999----999887410789981389
Q gi|254780832|r 19 MFESIGVVYG-DIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTI----KYILLLLRADNDGEGGIL 93 (628)
Q Consensus 19 ~~~alGvV~G-DIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~v----KYv~~~l~adn~GEGGi~ 93 (628)
.+.....++| -||.-|-=+=+.+...++. =.+||++|.+--+-++ -|..+-- ....-||-+
T Consensus 16 ll~~v~livg~iIGsGIFvsp~~Vl~~~gs------------vg~sL~iWv~~gi~s~~galcyaELGT--~ipksGgd~ 81 (479)
T KOG1287 16 LLSGVSLIVGNIIGSGIFVSPKGVLANTGS------------VGLSLIIWVFCGIISIIGALCYAELGT--SIPKSGGDY 81 (479)
T ss_pred EECCEEEEEEEEEECCCCCCCHHHHHCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCH
T ss_conf 603356899746732121086799972763------------167999999999999988999987724--416898614
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCC---HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998726755425778999999999650034699999998724-66427366761---2899999999999750001
Q gi|254780832|r 94 SLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEG-VRYIAPELDNF---IILIALGILVLLFMLQSHG 169 (628)
Q Consensus 94 aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSaveg-l~~~~P~l~~~---~v~iai~il~~Lf~iq~rG 169 (628)
|- +.+.-++....+ ..=..++.-+.-+-|+.-++-.+. ++..+|.-.+. .-.++.+.+..|+.+|.+.
T Consensus 82 ay---i~~afg~~~aF~-----~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~ 153 (479)
T KOG1287 82 AY---ISEAFGPFPAFL-----FLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFS 153 (479)
T ss_pred HH---HHHHHCCCHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16---997746424699-----9999999753248999999999986403577788733899999999999999987401
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCC-------CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999845999999999999999865018----74444-------6796899999983743589999899998510878
Q gi|254780832|r 170 TKGVACFFSPIMVAWLLMITVSGLIHISDD----WGILA-------AFNPMYALHMVFGKGTISLVVLGSVFLTITGAEA 238 (628)
Q Consensus 170 t~~~g~~F~pi~~lwf~~i~~~gi~~i~~~----p~vl~-------a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EA 238 (628)
+|-..++-..-+..=++.+..+.+.|+... .+.+. ..++.+ ....-..|+.++++=---=+++|-
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~----i~lafysglfa~~GWd~lN~vteE 229 (479)
T KOG1287 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGN----IALAFYSGLFAFSGWDYLNYVTEE 229 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCCCCHHHCCCHHH
T ss_conf 4399999999999999999999983423157635235566544567675579----999998842032572143013675
Q ss_pred HHCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHH-HHCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 743645467116999999---9999999999747868-73592455203687-278632899999999999996030100
Q gi|254780832|r 239 LYADLGHFGRKPIQYAWM---VIFPALAINYLGQGAL-VLSNPEAIKDPFYM-MFGGWFLPFAVLTATCATVIASQAVIT 313 (628)
Q Consensus 239 l~advghF~~~~i~~aw~---~v~~~L~l~y~Gq~a~-ll~~~~~~~~~f~~-~~p~~~~~~~v~~at~a~iIaSqa~is 313 (628)
+-|-.-.+.| .+-.+.. .++..--++|++--.. -+.+-+++.-.|.+ ..|.+. |.+-..+.+.++=.-++.++
T Consensus 230 iknP~ktLP~-Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~if 307 (479)
T KOG1287 230 IKNPRRTLPR-AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIF 307 (479)
T ss_pred HCCCCCCCHH-HHHHHHHHHHHHHHHHHHHEEEECCHHHHCCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 2283015508-998704999999998674504855799960562589899988564169-99999999985343335787
Q ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25899999997599886568703887657110068999999998887773268889887899999999999899999999
Q gi|254780832|r 314 GTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFV 393 (628)
Q Consensus 314 g~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~ 393 (628)
..=++..++.+.|.+|-.-- +-|.+ + ..|..-.+......++...-+|.+.|++..+.+-.+.+.++-..+.+..
T Consensus 308 s~SR~~~~~areG~LP~~~s-~i~~~---~-~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR 382 (479)
T KOG1287 308 SSSRLFYAGAREGHLPAFFS-MISVR---R-FTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLR 382 (479)
T ss_pred HHHHHHHHHHHCCCCCHHHH-HHCCC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87799999987567607777-51478---8-9973799999999999999711999999999999999999999999998
Q ss_pred HHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98358--5699999999999999999999999852-34---869999999999999999899
Q gi|254780832|r 394 HVCWK--WKISKVIIFLFPLLSIEMTFLGANLFKV-LD---GGYTPLLIASLCIIVMWTWRR 449 (628)
Q Consensus 394 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~Kf-~~---GgW~~lli~~il~~iM~~W~~ 449 (628)
+++.+ ++.+.....-+.+.+....++..-..+= +- =|+.-++.+..++.+..-|+.
T Consensus 383 ~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287 383 WKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred HHCCCCCCCEEEEEEHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECC
T ss_conf 62789999876535668999999998944255525875304678899875302147888457
No 23
>TIGR00909 2A0306 amino acid transporter; InterPro: IPR004758 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this group are involved in the transport of the cationic amino acids (arginine,lysine and ornithine)..
Probab=97.81 E-value=0.0027 Score=39.39 Aligned_cols=303 Identities=14% Similarity=0.106 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
Q ss_conf 9999999887410789981389999999872675542577899999999965003469999999872466427-------
Q gi|254780832|r 72 VVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIA------- 144 (628)
Q Consensus 72 iv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~------- 144 (628)
++-+-|..+.=--..-|-+=+++= .+.--..|-+.|..+..+|.+-.|+==..=.+.++...
T Consensus 52 f~AL~YaEla~~~P~~Gs~Y~y~~-----------~alGe~~afi~GW~l~le~~va~a~vavgw~~Y~~~~L~G~~G~~ 120 (451)
T TIGR00909 52 FIALVYAELAAMLPVAGSVYTYAY-----------EALGELVAFIIGWVLILEYGVAVAAVAVGWSGYLQEFLEGFVGLD 120 (451)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999988721365676035698-----------889999999998999999999999999999999998721233777
Q ss_pred --------CCCCC--CHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHH
Q ss_conf --------36676--128-99-99999999975000189999984599999999999999986501---87444467968
Q gi|254780832|r 145 --------PELDN--FII-LI-ALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD---DWGILAAFNPM 209 (628)
Q Consensus 145 --------P~l~~--~~v-~i-ai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~---~p~vl~a~~P~ 209 (628)
|+--+ +.+ =+ +..++..+..+|.+|+||++++=...+.+=++.+......++.+ +|..--...|
T Consensus 121 LP~~Lta~Pg~ggGtft~fNlpal~~v~~~~~~l~~G~keS~~~N~Ilv~lK~~~~llF~~~ga~~~~~~P~~~SN~~p- 199 (451)
T TIGR00909 121 LPAVLTAKPGDGGGTFTVFNLPALLIVLFLTYILYLGAKESGKVNSILVVLKVLAVLLFAALGAIHFKSNPLLVSNYTP- 199 (451)
T ss_pred CCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-
T ss_conf 8600161578987515452057999999999998761020433353256788999999999877642379861017743-
Q ss_pred HHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHH------HHHHH-HHHHHHHHHHHHHHHHH----H---H
Q ss_conf 99999983743589-999899998510878743645467116------99999-99999999999747868----7---3
Q gi|254780832|r 210 YALHMVFGKGTISL-VVLGSVFLTITGAEALYADLGHFGRKP------IQYAW-MVIFPALAINYLGQGAL----V---L 274 (628)
Q Consensus 210 ~~~~~~~~~~~~g~-~~lg~v~La~TG~EAl~advghF~~~~------i~~aw-~~v~~~L~l~y~Gq~a~----l---l 274 (628)
+..-|..|. .+-+-+|.|.+|=|+++..=--.|.|. |-.+. ..+..=.+.+-.--|+. . .
T Consensus 200 -----F~P~GfggV~~a~~l~F~Af~GF~~~~~aaEE~KnP~rdiP~~I~~SL~~~T~~Yvl~~a~~~G~~radvP~~~~ 274 (451)
T TIGR00909 200 -----FMPMGFGGVLAATALVFFAFIGFEAVSTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVRADVPFRQL 274 (451)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -----311226899999999999987455540582324585225306899999999999999999999788605765863
Q ss_pred CCHH-HHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHH
Q ss_conf 5924-55203687-278632899999999999996030100258999999975998865687038876571100689999
Q gi|254780832|r 275 SNPE-AIKDPFYM-MFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLF 352 (628)
Q Consensus 275 ~~~~-~~~~~f~~-~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~l 352 (628)
.+.+ ..+..-+. ...++.=+..-.-|-+.+.-.-.+.++|.=+++-...|||++|| -.|+ .+++--.|-+|.+
T Consensus 275 ~~~~a~l~~~~~~~~~~~~g~~i~~~GAV~~~~~v~~~~~Yg~~RvlFAmSRDGllP~----slSk-vH~k~~tP~~~~~ 349 (451)
T TIGR00909 275 AGSEAPLSLVKVSDLGQKIGALIITAGAVISIASVMLATLYGTSRVLFAMSRDGLLPK----SLSK-VHPKTKTPHVSIL 349 (451)
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHH-HCCCCCCCCHHHH
T ss_conf 6897057898888740318999999859999999999998789999999986177530----3763-2344687504899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998887773268889887899999999999899999999983
Q gi|254780832|r 353 LFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVC 396 (628)
Q Consensus 353 l~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~ 396 (628)
-.-..+++...+.-.+.|+.+=.++.-..|.+...-+..-+||+
T Consensus 350 ~fs~~~~~la~~~P~~~la~l~s~g~L~~f~~v~v~v~~LR~~~ 393 (451)
T TIGR00909 350 IFSLLAALLASLVPLEALAELTSIGTLIAFALVNVAVIILRRRR 393 (451)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999984156889999999999999999999999870578
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0036 Score=38.55 Aligned_cols=308 Identities=20% Similarity=0.230 Sum_probs=156.8
Q ss_pred HHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCH
Q ss_conf 998973230457367667899999714777777778993462048889899999999999998874107-----899813
Q gi|254780832|r 17 YLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRAD-----NDGEGG 91 (628)
Q Consensus 17 ~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~ad-----n~GEGG 91 (628)
...+-|+| |-|||.=-+==....+-+++ + .+ |.-..+==-++++||+= .|=+-|
T Consensus 19 HIqlIAiG---GaIGtGLFlGSg~~I~~AGP------S---------vl---LaY~I~G~~~f~iMRaLGEm~~~~p~~g 77 (462)
T COG1113 19 HIQLIAIG---GAIGTGLFLGSGSAIAMAGP------S---------VL---LAYLIAGIFVFLIMRALGEMLVANPVSG 77 (462)
T ss_pred HHHHHHHH---HHHHHCCCCCCCCHHHHCCC------H---------HH---HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999974---15643200156401432086------9---------99---9999999999999998878887088888
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8999999987267554257789999999996500346999999987246642736676128999999999997500018-
Q gi|254780832|r 92 ILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGT- 170 (628)
Q Consensus 92 i~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt- 170 (628)
.|+-|+- +..++. .|-+.+=.---..++|----+...-..++.=+|+...|+- +++.++++..+|+-++
T Consensus 78 SF~~~a~--~~lG~~------Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~--al~~~~l~~~~NL~sVk 147 (462)
T COG1113 78 SFSDYAR--KYLGPW------AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVF--ALAAVVLLLAVNLISVK 147 (462)
T ss_pred CHHHHHH--HHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 3999999--871624------7889899999999999999999999999886379717999--99999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --9999984599999999999999986501---874444679689999998374358-9999899998510878743645
Q gi|254780832|r 171 --KGVACFFSPIMVAWLLMITVSGLIHISD---DWGILAAFNPMYALHMVFGKGTIS-LVVLGSVFLTITGAEALYADLG 244 (628)
Q Consensus 171 --~~~g~~F~pi~~lwf~~i~~~gi~~i~~---~p~vl~a~~P~~~~~~~~~~~~~g-~~~lg~v~La~TG~EAl~advg 244 (628)
.|.-..|+-+...=+..+..+|++=++. .++.-..++-...-.-+..|+..| +.++.-++-|..|.|-+-..-+
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~ 227 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAA 227 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87788999999999999999999999995115799877653331237881887569999999999999854999999988
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHC-CH----HHHHHHHHHHCC----CCH--HHHHHHHHHHHHHHHCCCC
Q ss_conf 467116--9999999999999999747868735-92----455203687278----632--8999999999999960301
Q gi|254780832|r 245 HFGRKP--IQYAWMVIFPALAINYLGQGALVLS-NP----EAIKDPFYMMFG----GWF--LPFAVLTATCATVIASQAV 311 (628)
Q Consensus 245 hF~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll~-~~----~~~~~~f~~~~p----~~~--~~~~v~~at~a~iIaSqa~ 311 (628)
.-+.|. +..|---+.--+++-|.|--..++. .| +..+.||-+.+. ++. ....+++ .|..=+-++.
T Consensus 228 Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVL--tAa~S~~NSg 305 (462)
T COG1113 228 EAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVL--TAALSALNSG 305 (462)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEE--EHHHHCCCCC
T ss_conf 61280667789884232999999999999986131412368789958999986399420332368986--0002002444
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHH
Q ss_conf 00258999999975998865687038876571100689999999988877
Q gi|254780832|r 312 ITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFV 361 (628)
Q Consensus 312 isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lv 361 (628)
+++.=+++.+..+.|.-|+. ....|++ .+=.|++..-.....+.++
T Consensus 306 lystsRmL~~la~~g~APk~-~~klsk~---gVP~~ai~~s~~~~~~~V~ 351 (462)
T COG1113 306 LYSTSRMLYSLAKQGDAPKA-FAKLSKR---GVPVNAILLSAVVLLLGVV 351 (462)
T ss_pred CCCCCHHHHHHHHCCCCCHH-HHHCCCC---CCCHHHHHHHHHHHHHHHH
T ss_conf 43430578777635765476-7640646---8879999999999999999
No 25
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.78 E-value=0.039 Score=31.90 Aligned_cols=345 Identities=20% Similarity=0.215 Sum_probs=161.8
Q ss_pred HHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 99989732304573676678999997147777777789934620488898999999999999988741078998138999
Q gi|254780832|r 16 FYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSL 95 (628)
Q Consensus 16 ~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL 95 (628)
-.+..-||| |-|||-=.-.--+.++..++.+ .+ ++-+++..++-. +-+.+=-|..--. ..|.|.-
T Consensus 49 RHl~MIAiG---G~IGTGLfvgsG~~l~~aGP~g-------~l---i~y~i~G~~vy~-vm~sLGEma~~~P-~sGsF~~ 113 (541)
T COG0833 49 RHLQMIAIG---GAIGTGLFVGSGKALSQAGPAG-------LL---IAYLIIGIMVYF-VMQSLGELAVFYP-VSGSFST 113 (541)
T ss_pred HHHHHHHHC---CCCCCCEEEECCHHHHCCCCHH-------HH---HHHHHHHHHHHH-HHHHHHHHHHHCC-CCCCHHH
T ss_conf 789998732---4220342563563653069599-------99---999999999999-9998877771267-8875434
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf 9999872675542577899999999965003469999999872466427366761289999999999975000189---9
Q gi|254780832|r 96 LALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTK---G 172 (628)
Q Consensus 96 ~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~---~ 172 (628)
|+- | .+=-..|.--+=...-.+.+|.|.-+.+|-.=++-=.|.--|--+|+++ ++++++.+|..|+| |
T Consensus 114 ya~--r------fvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~i-F~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 114 YAT--R------FVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAI-FLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred HHH--H------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHCCCCCCH
T ss_conf 346--6------4583488898999999999996699998777432306899970799999-999999998723650010
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHH----HHHHHHHHHCCC
Q ss_conf 999845999999---99999999986501874444679689999998374--358999989999----851087874364
Q gi|254780832|r 173 VACFFSPIMVAW---LLMITVSGLIHISDDWGILAAFNPMYALHMVFGKG--TISLVVLGSVFL----TITGAEALYADL 243 (628)
Q Consensus 173 ~g~~F~pi~~lw---f~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~--~~g~~~lg~v~L----a~TG~EAl~adv 243 (628)
.-..|+-+-.+- |..++++...|...+ .+..+.++..+++ ..||.++-++++ +..|.|-+--.-
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~-------~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPT-------HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCEEEECCCCCCCCCHHHHHHHHHHHEEEEECEEEEEEEE
T ss_conf 049999999999999999999995188998-------8876202214898777646889998854135640315144520
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHH----HHHHH-CCHH--------HHHHHHHHHCCC--CHHHHHHHHHHHH--H
Q ss_conf 546711--69999999999999999747----86873-5924--------552036872786--3289999999999--9
Q gi|254780832|r 244 GHFGRK--PIQYAWMVIFPALAINYLGQ----GALVL-SNPE--------AIKDPFYMMFGG--WFLPFAVLTATCA--T 304 (628)
Q Consensus 244 ghF~~~--~i~~aw~~v~~~L~l~y~Gq----~a~ll-~~~~--------~~~~~f~~~~p~--~~~~~~v~~at~a--~ 304 (628)
|-=..| .+-.|.--++--+++-|.+- +..+- .||+ +.+-||-..+.+ ....|-+.=|.+. .
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 05578213457999999999999999999975477068980000477677267974375774598530578879999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHH
Q ss_conf 996030100258999999975998865687038876571100689999999988877732688----8988789999999
Q gi|254780832|r 305 VIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHS----ESLVAAYGISVSG 380 (628)
Q Consensus 305 iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s----~~L~~aYgi~V~~ 380 (628)
+=+++...+++=+++....+.|..|+. +.++++++... +.+..-+..+++..+..-.+. +-|.+.=|+..+.
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~-f~~~~r~GvP~---~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i 413 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKI-FAKVDRRGVPL---VALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFI 413 (541)
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHH-HHHHCCCCCCH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 977302021888999999866997667-88608999734---78999999999999985347526999999987788999
Q ss_pred HH---HHHHHHHHHHHHH
Q ss_conf 99---9989999999998
Q gi|254780832|r 381 TM---VISTIMFSVFVHV 395 (628)
Q Consensus 381 tf---~lTt~l~~~~~~~ 395 (628)
+- .+++.-++.-++.
T Consensus 414 ~W~~I~~shirFR~A~~~ 431 (541)
T COG0833 414 AWGSICLSHIRFRRAMKA 431 (541)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998
No 26
>pfam01490 Aa_trans Transmembrane amino acid transporter protein. This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
Probab=93.28 E-value=0.53 Score=24.52 Aligned_cols=179 Identities=10% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20488898999999999999988741078998138999999987267554257----78999999999650034699999
Q gi|254780832|r 58 VIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVL----IALGLAGSALFIGDSMVTPALSV 133 (628)
Q Consensus 58 v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~----~~~gligaa~ll~D~iLTpAISV 133 (628)
+.|.+-+++....-.-|.+...-..+.-++.+-+....-.+..+..+|+.+++ ...-.+|.+.. |++..+-+.
T Consensus 34 ~~g~i~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~---y~i~~~~~l 110 (405)
T pfam01490 34 IPGLILLLIVGLISLYTLHLLIRCSKYVDKKGKRRKSYGDLGYRLFGPKGKYIILFAQLLNLFGVCIV---YLIFAGDNL 110 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 99999999999999999999999998735589977689999999949649999999999999999999---999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHH
Q ss_conf 9987246642736676128999999999997500018999998--459999999999999998650187-4444679689
Q gi|254780832|r 134 LSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACF--FSPIMVAWLLMITVSGLIHISDDW-GILAAFNPMY 210 (628)
Q Consensus 134 lSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~--F~pi~~lwf~~i~~~gi~~i~~~p-~vl~a~~P~~ 210 (628)
.+-.+..... +. .+...++.+..++.+-....|-.++.+.+ ++-...++...............+ .......+..
T Consensus 111 ~~~~~~~~~~-~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (405)
T pfam01490 111 PAIFDSFFDD-CH-ISLVYFILIFGLIFIPLSFIPNLSALSILSLVAAVSSFYYIVILVVIVAELGVSTAQGVGLLGAST 188 (405)
T ss_pred HHHHHHHCCC-CC-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999864788-77-660665389999999998505588999999999999999999999998750566787877667554
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH---HHHHCCCCCC
Q ss_conf 99999837435899998999985108---7874364546
Q gi|254780832|r 211 ALHMVFGKGTISLVVLGSVFLTITGA---EALYADLGHF 246 (628)
Q Consensus 211 ~~~~~~~~~~~g~~~lg~v~La~TG~---EAl~advghF 246 (628)
. .+....+.+++....|..+. =.++++|.+=
T Consensus 189 ~-----~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 222 (405)
T pfam01490 189 N-----IKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSP 222 (405)
T ss_pred C-----CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 3-----317789999999999962233479999874792
No 27
>KOG1289 consensus
Probab=92.88 E-value=0.61 Score=24.15 Aligned_cols=414 Identities=15% Similarity=0.098 Sum_probs=198.9
Q ss_pred CHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 05999897323045736766789999971477777777899346204888989999999999999887410789981389
Q gi|254780832|r 14 NPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGIL 93 (628)
Q Consensus 14 ~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~ 93 (628)
..+..+++.+|.+-| +.+++......++ .+.-+.|- +|==...+.+.+--.-++=.-.+-| |.-+
T Consensus 54 s~fg~sFs~~g~~~~---------i~tsm~~gl~~gG---~~~~vwgw--lIa~~~~i~va~slaEl~Sa~PtsG-gLy~ 118 (550)
T KOG1289 54 SIFGISFSLMGLLPG---------IATSMAYGLGSGG---PPTLVWGW--LIAGFFSICVALSLAELCSAMPTSG-GLYF 118 (550)
T ss_pred HHHHHHHHHHCCHHH---------HHHHEEECCCCCC---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCC-CHHH
T ss_conf 999899887300042---------2541442123687---58899999--9999999999857999985488887-6899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCC--C-CHHHHHHHHHHHHHHHH
Q ss_conf 9999998726755425778999999999650034699999998724664----273667--6-12899999999999750
Q gi|254780832|r 94 SLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRY----IAPELD--N-FIILIALGILVLLFMLQ 166 (628)
Q Consensus 94 aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~----~~P~l~--~-~~v~iai~il~~Lf~iq 166 (628)
.-..++..| +-.+.+-+-|...+.-+.-++|--..|+.+-+.. ..|+.. + +...+..+++++..++|
T Consensus 119 waa~lap~k------~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln 192 (550)
T KOG1289 119 WAAVLAPPK------YGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLN 192 (550)
T ss_pred HHHHHCCCC------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 999864741------25679899999999998960210168799999988764389976641576658999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHH-CCH--HHHH---HHHHHHHHHHHHHHH
Q ss_conf 001899999845999999999999999865018744446796899-999983-743--5899---998999985108787
Q gi|254780832|r 167 SHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYA-LHMVFG-KGT--ISLV---VLGSVFLTITGAEAL 239 (628)
Q Consensus 167 ~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~-~~~~~~-~~~--~g~~---~lg~v~La~TG~EAl 239 (628)
...+|-..+++..-+|+=++.+....+.=.....+-- .+|-.+. +..+.+ .++ .||. .|-...=+++|-||-
T Consensus 193 ~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~-gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~ 271 (550)
T KOG1289 193 SLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKT-GFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAA 271 (550)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCH
T ss_conf 1771799999999999999999999987641158877-877776454202246799842389987523641688335733
Q ss_pred HCCC-----CCCCCHH-HHHH----HHHH-HHHHHHHHHH---HHHHHHCC-HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 4364-----5467116-9999----9999-9999999974---78687359-2455203687278632899999999999
Q gi|254780832|r 240 YADL-----GHFGRKP-IQYA----WMVI-FPALAINYLG---QGALVLSN-PEAIKDPFYMMFGGWFLPFAVLTATCAT 304 (628)
Q Consensus 240 ~adv-----ghF~~~~-i~~a----w~~v-~~~L~l~y~G---q~a~ll~~-~~~~~~~f~~~~p~~~~~~~v~~at~a~ 304 (628)
..=- +....|. |-.+ +.+- ...+.+.|.- +.+.+-.+ +....|-+++..++..-..+..+...+.
T Consensus 272 ~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~ 351 (550)
T KOG1289 272 AHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIAL 351 (550)
T ss_pred HHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHH
T ss_conf 77898860534312399999999999999999999987536418888368888829999998548773671269999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99603010025899999997599886568703887657110068999999998887773268889887899999999999
Q gi|254780832|r 305 VIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVI 384 (628)
Q Consensus 305 iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~l 384 (628)
..-.|+..++.=++.-.-.|+|.+|--+..+.=+... ++=.|.|-.-..+..++..+.+.++.+.-+...+|+...+.-
T Consensus 352 f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t-~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~A 430 (550)
T KOG1289 352 FFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQT-KVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIA 430 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9843788888878886531368788763245327889-984789899999999999998010999999999999999999
Q ss_pred HHH-HHHHHHHHH-----CCCCHHH----HHHHHHHHHHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899-999999983-----5856999----999999999999999999-99852--348699999999999999998999
Q gi|254780832|r 385 STI-MFSVFVHVC-----WKWKISK----VIIFLFPLLSIEMTFLGA-NLFKV--LDGGYTPLLIASLCIIVMWTWRRG 450 (628)
Q Consensus 385 Tt~-l~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~v~~~~-~~~Kf--~~GgW~~lli~~il~~iM~~W~~G 450 (628)
... .+.+....| .+|++.+ .....+.+...-.+++.. ...+. .+=-|-+++.+.+.++...-|...
T Consensus 431 y~iP~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~ 509 (550)
T KOG1289 431 YAIPIFCRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS 509 (550)
T ss_pred HHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHEEEEE
T ss_conf 9986875110111446789962541043048999999999999974876258982337457774031466642112555
No 28
>TIGR00911 2A0308 L-type amino acid transporter; InterPro: IPR004760 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. In this family of L-type amino acid transporters one example is the high affinity methionine permease from yeast.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=92.75 E-value=0.64 Score=24.03 Aligned_cols=407 Identities=19% Similarity=0.237 Sum_probs=216.0
Q ss_pred HHHHCCCEECCC-CC----CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCC
Q ss_conf 897323045736-76----678999997147777777789934620488898999999999----999988741078998
Q gi|254780832|r 19 MFESIGVVYGDI-GT----SVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVT----IKYILLLLRADNDGE 89 (628)
Q Consensus 19 ~~~alGvV~GDI-GT----SPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~----vKYv~~~l~adn~GE 89 (628)
.+++.|+|=|.| |+ ||-=+++++=+ =.||||+|+.+=+-+ +=|..+=--...+
T Consensus 63 ll~gv~iIvG~iiGSGIFvsP~GvL~~~GS----------------VGLaLi~WaV~G~~s~~GAl~YAELGttI~KS-- 124 (546)
T TIGR00911 63 LLSGVGIIVGTIIGSGIFVSPKGVLKNAGS----------------VGLALIVWAVCGIISIVGALVYAELGTTIPKS-- 124 (546)
T ss_pred EEEEEEEEECCEEECEEEECCCHHCCCCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 888766887453414289804212024887----------------12889999999999999999985106631478--
Q ss_pred CHHHHHHHHHHHHCCCCCHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 138999999987267554257--------7899-9999999650034699999998724664273667612899999999
Q gi|254780832|r 90 GGILSLLALLLKKIPKRSTVL--------IALG-LAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILV 160 (628)
Q Consensus 90 GGi~aL~sl~~~~~~~~~~~~--------~~~g-ligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~ 160 (628)
||- |+=+..-=++.+.++ +.|| --+-|+..+.|+|+|- ..+...|+.. .=.++++.++
T Consensus 125 GG~---Y~Y~~~~FG~L~aFl~~W~~~lvi~p~~~A~~aL~Fa~Y~L~P~--------f~~C~~P~~~--~r~va~~~~l 191 (546)
T TIGR00911 125 GGE---YAYILEVFGPLLAFLRLWIELLVIRPGSQAVIALVFATYILKPV--------FPDCEVPELA--IRLVAVLCVL 191 (546)
T ss_pred CCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCCHHH--HHHHHHHHHH
T ss_conf 872---34688772773889887788876632899999999999860475--------5788887677--8899999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf 9997500018999998---4599999999999999986501-874444679689999998-3743589999899998510
Q gi|254780832|r 161 LLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISD-DWGILAAFNPMYALHMVF-GKGTISLVVLGSVFLTITG 235 (628)
Q Consensus 161 ~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~-~~~~~g~~~lg~v~La~TG 235 (628)
+|+++|-.-+|-.-++ |+--=+.=++.|.++|.+.+.+ -.+-...++|.-+.+-.. .+...--.+|=+++=|.-|
T Consensus 192 ll~~vNc~SVk~atrvQ~~ft~~Kl~all~Ii~~G~v~LgKGLkG~~~~~~pk~AFEg~~~~~~g~~~LAlY~G~~Ay~G 271 (546)
T TIGR00911 192 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIILGLVQLGKGLKGGVESLNPKNAFEGTETTSVGGLVLALYSGLFAYGG 271 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999855689999999999999999999999987987435545885334754567888777766778899888887755
Q ss_pred HHHHHCCCCCCCCH------HHHHHH---HHHHHHHHHHHHHHH---HHHHC-CHHHHHHHHHHHC-C---CCHHHHHHH
Q ss_conf 87874364546711------699999---999999999997478---68735-9245520368727-8---632899999
Q gi|254780832|r 236 AEALYADLGHFGRK------PIQYAW---MVIFPALAINYLGQG---ALVLS-NPEAIKDPFYMMF-G---GWFLPFAVL 298 (628)
Q Consensus 236 ~EAl~advghF~~~------~i~~aw---~~v~~~L~l~y~Gq~---a~ll~-~~~~~~~~f~~~~-p---~~~~~~~v~ 298 (628)
=-=+===.+-...| .|-+|. ++++..-=++|+.-- -++.+ ..++++--|.... + .|..+..|-
T Consensus 272 WnyLNf~teEv~nP~rtLP~AI~iS~~~vT~~YvltN~AYft~~sp~~lL~SeG~~avAV~F~~~~lGG~~~~~~P~~Vg 351 (546)
T TIGR00911 272 WNYLNFVTEEVKNPYRTLPIAIIISMPIVTFVYVLTNIAYFTVLSPEELLASEGKEAVAVDFGERLLGGVMSLIMPILVG 351 (546)
T ss_pred HHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 65441001221178665640268889999999999988998607978961456773888720002224689999999998
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCE-EEEECCCCCCC-CEECHHHHHHHHHHHHHHHHHCCCHHHHHH-HHH
Q ss_conf 999999996030100258999999975998865-68703887657-110068999999998887773268889887-899
Q gi|254780832|r 299 TATCATVIASQAVITGTFSLARQAIHLGFLPRM-KIFFTSETFKG-QVFLPSINLFLFVGVLLFVIGFRHSESLVA-AYG 375 (628)
Q Consensus 299 ~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~-~i~~tS~~~~g-qiYip~In~ll~ia~i~lvl~f~~s~~L~~-aYg 375 (628)
+++.=.+ +..++..=++.-++.|=|.+|.. ...|. +|... -+-+|.+ +-....-++...++|.-.|++ .-+
T Consensus 352 LS~FGsv---NG~~F~~SRL~f~~~REGhLP~~L~mi~~-~~~TPPmvG~P~~--~~~c~~T~l~~~~~D~y~Linn~~s 425 (546)
T TIGR00911 352 LSCFGSV---NGSVFSSSRLFFVAAREGHLPSILSMIHV-KRLTPPMVGLPSL--LIVCTLTLLMLFSGDIYSLINNFIS 425 (546)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHCCCCCCHHHHHHCCC-CCCCCCCCHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8764013---26889999999960244500456733035-5688873006689--9999999976232308999988877
Q ss_pred HHHHHHHHHHHH--HHHHHHHH----HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-C-----HHHHHHHHHH
Q ss_conf 999999999899--99999998----35856-9999999999999999999999985--2348-6-----9999999999
Q gi|254780832|r 376 ISVSGTMVISTI--MFSVFVHV----CWKWK-ISKVIIFLFPLLSIEMTFLGANLFK--VLDG-G-----YTPLLIASLC 440 (628)
Q Consensus 376 i~V~~tf~lTt~--l~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~K--f~~G-g-----W~~lli~~il 440 (628)
-.-.+-+.++-+ +..+|-|. .|++| ....+.+-..|...++.+++....+ +.+| | |...+.+.-+
T Consensus 426 F~~~l~~~~avaGll~lR~~~PqGkie~~rPGiKv~~f~P~~f~l~~lfl~i~s~y~~P~~cgvgssmPY~~i~L~GvPv 505 (546)
T TIGR00911 426 FANWLFVALAVAGLLWLRYKKPQGKIELNRPGIKVPLFFPVLFLLACLFLIILSLYSKPVECGVGSSMPYFIIMLTGVPV 505 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999889987514898701059687206569889999999999874035887556541025788889986548
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 9999-----998999999999864248
Q gi|254780832|r 441 IIVM-----WTWRRGTNLLSTLTRHAD 462 (628)
Q Consensus 441 ~~iM-----~~W~~G~~~~~~~~~~~~ 462 (628)
+++- .-|+.==|-.++..+..+
T Consensus 506 YflGGvYYvV~W~~KP~w~~~~i~s~T 532 (546)
T TIGR00911 506 YFLGGVYYVVWWQNKPKWFRSLIVSVT 532 (546)
T ss_pred HHHCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 762983699984037855665420143
No 29
>TIGR00906 2A0303 cationic amino acid transport permease; InterPro: IPR004755 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this family are low-affinity, high capacity permeases involved in the transport of arginine, lysine and ornithine, the cationinc amino acids.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=85.07 E-value=2.4 Score=20.34 Aligned_cols=342 Identities=16% Similarity=0.120 Sum_probs=207.4
Q ss_pred CHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHH
Q ss_conf 0599989732304573676678999997147777777789934620488898999999-999999988741078998138
Q gi|254780832|r 14 NPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTI-VVTIKYILLLLRADNDGEGGI 92 (628)
Q Consensus 14 ~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~l-iv~vKYv~~~l~adn~GEGGi 92 (628)
+++-|+.-++|-+-| |=.|++.-...-+.. ++++ ++|.++=.+-- +.-.-|..|.-|-..-| +-
T Consensus 35 t~~Dl~~lgiG~~lG----aGiYVLtG~var~~s--GPAi-------vlSF~~sglaa~Ls~lcYaEFgar~P~aG--sa 99 (616)
T TIGR00906 35 TTLDLMALGIGSTLG----AGIYVLTGEVARNDS--GPAI-------VLSFLISGLAAVLSGLCYAEFGARVPKAG--SA 99 (616)
T ss_pred HHHHHHHHHHHHHHH----CHHHHHHHHHHHHCC--CCEE-------EHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CC
T ss_conf 399999998656751----316534118998537--9846-------23789999999998643331031116788--73
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC-------------CC---CCCCHHH
Q ss_conf 99999998726755425778999999999650034---69999999872466427-------------36---6761289
Q gi|254780832|r 93 LSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMV---TPALSVLSAVEGVRYIA-------------PE---LDNFIIL 153 (628)
Q Consensus 93 ~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iL---TpAISVlSavegl~~~~-------------P~---l~~~~v~ 153 (628)
++ |+-+ ..-=+.+-+.|--++-+||+ -+|=|=+|--|.|-+-. +. +..|-=+
T Consensus 100 Y~-Y~yV--------~~GelwAFI~gWn~iL~YviG~aaVARsWs~yFd~Ll~k~~~~F~~~~~~~~~~G~GflA~~pD~ 170 (616)
T TIGR00906 100 YL-YSYV--------TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLSKKIGDFTRTVVKLNEDGKGFLAEYPDF 170 (616)
T ss_pred CH-HHHH--------HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHCCHH
T ss_conf 11-1222--------46678887850620022122122665206778887616884468788774068974312312028
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC---------C-------CCHHHHHH
Q ss_conf 999999999975000189999984599999999999999986501----874444---------6-------79689999
Q gi|254780832|r 154 IALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD----DWGILA---------A-------FNPMYALH 213 (628)
Q Consensus 154 iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~----~p~vl~---------a-------~~P~~~~~ 213 (628)
+|+.++.++..+=-.|+|||+++--.=+.+=++.+..+.+-|+.+ ++..-. | -+-.|+..
T Consensus 171 ~Av~l~~l~avl~~~G~K~Sa~vN~~f~~in~~VL~FViiaGf~kadv~nw~~te~~~~~~~~sarePP~~~~~~~YG~g 250 (616)
T TIGR00906 171 FAVILILLLAVLLALGVKESARVNKIFTIINLLVLLFVIIAGFVKADVKNWSITEEFLKNISASAREPPSENGTSIYGAG 250 (616)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
T ss_conf 99999999999987065122358899999999999999984223101102132055510000224789887871430578
Q ss_pred HHHHCCHHHHHHH---------HHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH-HC------
Q ss_conf 9983743589999---------89999851087874364546711--699999999999999997478687-35------
Q gi|254780832|r 214 MVFGKGTISLVVL---------GSVFLTITGAEALYADLGHFGRK--PIQYAWMVIFPALAINYLGQGALV-LS------ 275 (628)
Q Consensus 214 ~~~~~~~~g~~~l---------g~v~La~TG~EAl~advghF~~~--~i~~aw~~v~~~L~l~y~Gq~a~l-l~------ 275 (628)
-|...|..|-..- |.=|+|.||=|+ |.| .|=++...=+.....+|+|-+|-+ +.
T Consensus 251 ~F~PYG~~G~l~gAAtcFfAFiGFda~aT~gEE~--------kNP~r~IPig~vtSL~v~~v~Y~l~~a~LtLM~PY~~~ 322 (616)
T TIGR00906 251 GFMPYGFRGVLSGAATCFFAFIGFDAIATTGEEV--------KNPQRAIPIGIVTSLLVCFVAYFLVSAALTLMMPYYLL 322 (616)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 7214522424337788988877367761010100--------47797550889999999999999999999851770015
Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHH
Q ss_conf 92455203687278-6328999999999999960301002589--99999975998865687038876571100689999
Q gi|254780832|r 276 NPEAIKDPFYMMFG-GWFLPFAVLTATCATVIASQAVITGTFS--LARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLF 352 (628)
Q Consensus 276 ~~~~~~~~f~~~~p-~~~~~~~v~~at~a~iIaSqa~isg~Fs--l~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~l 352 (628)
|||+-=-..|...+ ++.-|. + |.=+.-=.+.+...|.|+ +...+|+.|.+-..-+-+-++|- -.|-+-.+
T Consensus 323 D~dapl~vAF~~~Gw~~AKyi-v--A~GaL~gl~t~Ll~g~f~~pR~~yamA~dGLlF~~LA~iN~KT----kTPi~AT~ 395 (616)
T TIGR00906 323 DPDAPLPVAFEYVGWDVAKYI-V--AVGALCGLSTSLLGGMFPLPRVVYAMARDGLLFKWLAQINSKT----KTPINATV 395 (616)
T ss_pred CCCCCCCHHHCCCCCCHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCC----CCCHHHHH
T ss_conf 878776021035677246788-8--5878987652214534347889999973266650230130566----78279899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 99998887773268889887899999999999899--9999999
Q gi|254780832|r 353 LFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTI--MFSVFVH 394 (628)
Q Consensus 353 l~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~--l~~~~~~ 394 (628)
-+.+.-+++.++=+--.|..+-.||=-..+.+-.. ++.+|--
T Consensus 396 ~~~~i~A~~Aflf~Lk~LvDllSigTLlaYslVA~cvLilRYq~ 439 (616)
T TIGR00906 396 VSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQP 439 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999998999999988999999999999999873367
No 30
>TIGR00930 2a30 K-Cl cotransporter; InterPro: IPR004842 This is a family of K-Cl cotransporters. It includes bumetanide-sensitive sodium-(potassium)-chloride cotransporter, an electrically silent transporter system which is a mediator of sodium and chloride reabsorption. It plays a vital role in the regulation of ionic balance and cell volume. Bumetanide-sensitive sodium-(potassium)-chloride cotransporter belongs to the SLC12A family of transporters.; GO: 0015377 cation:chloride symporter activity, 0006814 sodium ion transport, 0006821 chloride transport, 0016021 integral to membrane.
Probab=84.53 E-value=2.5 Score=20.19 Aligned_cols=422 Identities=15% Similarity=0.187 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998874107899813899999998726755------------425778999999999650034699999998
Q gi|254780832|r 69 LTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKR------------STVLIALGLAGSALFIGDSMVTPALSVLSA 136 (628)
Q Consensus 69 l~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~------------~~~~~~~gligaa~ll~D~iLTpAISVlSa 136 (628)
.|.++++----|+-.-.=+| ||+ |=|+.|..+.- -++-..+=.+|++=-+.||+ .|+..++-.
T Consensus 125 vT~iT~lS~SAIaTNG~Vkg-GG~---YylISRSLGPEfGgsiGLiF~fanAvA~AMy~~Gf~Et~~~Y~-~P~aall~~ 199 (1171)
T TIGR00930 125 VTTITGLSMSAIATNGVVKG-GGA---YYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDYI-VPAAALLRE 199 (1171)
T ss_pred HHHHHHHHHHHHHHCCCCCC-CCC---CEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHH
T ss_conf 99887788999873786588-975---2213102051445899999999889999999998999998761-365466453
Q ss_pred ----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf ----7246642736676128999999999997500018999998---459999999999999998650187444467968
Q gi|254780832|r 137 ----VEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISDDWGILAAFNPM 209 (628)
Q Consensus 137 ----vegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~ 209 (628)
-.+.+...+.+++-+| +-.+.+++|..+-.-|++=..|+ |-.+.++=++.+.+=.+..-..++ .-+.+--
T Consensus 200 ~~Gt~~~~~~~~d~~nD~Ri-~G~v~~~~l~~i~~~Gm~w~~K~q~~fl~~~~~si~~~~vG~~~~~~~~~-~~~G~~~- 276 (1171)
T TIGR00930 200 VNGTDNGLKIMVDPINDIRI-IGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIVVGTIIPASDEK-PAKGFFG- 276 (1171)
T ss_pred HCCCCCCCCCCCCCCCCCEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC-CCCCEEC-
T ss_conf 21665443223554247033-46789877888876565578899999999999999877721201665675-5477320-
Q ss_pred HHHHHHHHC------------C---HHHHHHH------------------------------------------------
Q ss_conf 999999837------------4---3589999------------------------------------------------
Q gi|254780832|r 210 YALHMVFGK------------G---TISLVVL------------------------------------------------ 226 (628)
Q Consensus 210 ~~~~~~~~~------------~---~~g~~~l------------------------------------------------ 226 (628)
|..+.|.+| . ..-|-.|
T Consensus 277 l~~~~f~~n~~DvC~k~~~~n~tv~~~LW~~FC~s~l~~~~CD~y~~~~~~T~~~~~~~~~~~~~~enLWs~YL~kG~~v 356 (1171)
T TIGR00930 277 LKAEIFSENQFDVCAKTEVDNETVTTRLWGLFCSSRLLNATCDEYFSANNVTFVPGIRGAEGGVIKENLWSAYLEKGEIV 356 (1171)
T ss_pred CCHHHHHHCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 11455631575310001013510334566666412434420101100011103788877442110334456540488166
Q ss_pred -----------HH--------------------HHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------89--------------------999851087874364546711699--999999999999997478687
Q gi|254780832|r 227 -----------GS--------------------VFLTITGAEALYADLGHFGRKPIQ--YAWMVIFPALAINYLGQGALV 273 (628)
Q Consensus 227 -----------g~--------------------v~La~TG~EAl~advghF~~~~i~--~aw~~v~~~L~l~y~Gq~a~l 273 (628)
+. -|=|+||+=|=+|==|--+-|... ...++....-.+.|++.....
T Consensus 357 e~~~~~s~~~~~~~~~~Y~~~D~~~~Ff~~f~IFFPsvTGIlAGaNiSGDL~Dpq~aIP~GTllAil~Tt~~Y~~~v~~~ 436 (1171)
T TIGR00930 357 EKRGLPSTDVLGDLVELYVVADINTSFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLSSVVLF 436 (1171)
T ss_pred ECCCCCHHHHHCCCHHHHEEEEHHCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24777602231220000100000003313344300025766410377858124323067268999999999999988886
Q ss_pred ----HCCH------HHHH-----------HH------------HHHHCC-----------CCHHHHHHHHHHHHHHHHCC
Q ss_conf ----3592------4552-----------03------------687278-----------63289999999999999603
Q gi|254780832|r 274 ----LSNP------EAIK-----------DP------------FYMMFG-----------GWFLPFAVLTATCATVIASQ 309 (628)
Q Consensus 274 ----l~~~------~~~~-----------~~------------f~~~~p-----------~~~~~~~v~~at~a~iIaSq 309 (628)
..+. +.+. .. -|.+.. +|+...-...||+- ++=
T Consensus 437 Gac~~rda~g~~~D~~~~~~~~~~~~~ac~~~~~~s~C~~~~C~YGL~~~~~vm~l~s~f~p~I~~Gif~aTLs---~AL 513 (1171)
T TIGR00930 437 GACVVRDASGDLNDTLVTGGLTNCTSLACKLGFDFSECAKNTCEYGLMNNLQVMSLVSPFPPLIVAGIFSATLS---SAL 513 (1171)
T ss_pred CCCEEEEEECCCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH---HHH
T ss_conf 35047742113346233053010100000024430001468886352325302356404011566666788888---888
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01002589999999759988656870388765711006899999999888777326888988789999999999989999
Q gi|254780832|r 310 AVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMF 389 (628)
Q Consensus 310 a~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~ 389 (628)
+...|++.+++...+|+-+|-+++. .+++|.---|..-.+|.......-+.=++-+-.+|.- .-|.|.+..+
T Consensus 514 ~sL~sAPrllQAl~~D~I~P~L~~F---~~g~gkn~EP~~aylLT~~Ia~~filIA~Ln~iAPii-----SnFFL~sYal 585 (1171)
T TIGR00930 514 ASLVSAPRLLQALCKDNIYPLLQFF---GKGYGKNGEPLRAYLLTFFIALLFILIAELNTIAPII-----SNFFLASYAL 585 (1171)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHH
T ss_conf 8765599999997105722413204---6577878872798999999987876552112112267-----8899999999
Q ss_pred H----H--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HH------
Q ss_conf 9----9--------99983585699999999999999999999999852348699999999999999998--99------
Q gi|254780832|r 390 S----V--------FVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTW--RR------ 449 (628)
Q Consensus 390 ~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W--~~------ 449 (628)
. . =||=.||.-.| .+.+.+..+++.+.|++. |.--+++.++.+..|.+ ++
T Consensus 586 iNfscF~~~l~~~PgWRP~F~yY~~-~lSl~Ga~lC~~iMFl~~---------W~~alva~~i~~~lY~Yv~Yk~p~vnW 655 (1171)
T TIGR00930 586 INFSCFHASLLRSPGWRPRFRYYNW-WLSLLGAILCVAIMFLIS---------WWAALVAIVIALLLYKYVEYKKPDVNW 655 (1171)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf 9999999998528888865167879-999999999999999999---------999999999999987773211666675
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCC---CCCCCCEEEEEECCC----C--CHHHHHHHHHHHCC-CCCEEEEEEEEEEC
Q ss_conf 99999998642489978998621167---774360267861776----6--60189999876177-76337999999863
Q gi|254780832|r 450 GTNLLSTLTRHADIPIHSFIISIENS---SQQVPGTAIFLTSDS----Q--AVPDALLQNIKHNR-ILHEQNIILTINTA 519 (628)
Q Consensus 450 G~~~~~~~~~~~~~~~~~f~~~~~~~---~~rvpGtavflt~~~----~--~vP~~l~~~i~~n~-~lhe~~vfltV~~~ 519 (628)
|...+...... -++. ...++.. +|.-.=...-|++.+ | ..=|+|+++....+ .-.--.|+.||...
T Consensus 656 Gss~qa~~y~~---AL~~-~~~L~~~~~H~KN~rPQ~LVL~g~pG~l~~~~~~rP~L~dl~~~~~kk~~gL~I~g~v~~g 731 (1171)
T TIGR00930 656 GSSTQALSYSL---ALSS-LLRLEEVEDHVKNWRPQCLVLTGPPGKLEDNVVCRPALLDLASQLKKKGKGLMIVGSVLQG 731 (1171)
T ss_pred CCCHHHHHHHH---HHHH-HHHCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 64078999999---9999-9723478888554564332143788766411366603788999998706960899986547
Q ss_pred CCCC
Q ss_conf 7563
Q gi|254780832|r 520 NQPR 523 (628)
Q Consensus 520 ~~P~ 523 (628)
+.-.
T Consensus 732 ~~~~ 735 (1171)
T TIGR00930 732 PRKE 735 (1171)
T ss_pred CHHH
T ss_conf 6053
No 31
>KOG2082 consensus
Probab=83.74 E-value=2.7 Score=19.97 Aligned_cols=272 Identities=15% Similarity=0.188 Sum_probs=124.7
Q ss_pred HHHHHHHHHHCCCCCCCCHH--HH-------HHHHHHHHHHHHHHHHHHH-HHHCCHH--HHH-HHHH--HHCC-CCHHH
Q ss_conf 98510878743645467116--99-------9999999999999974786-8735924--552-0368--7278-63289
Q gi|254780832|r 231 LTITGAEALYADLGHFGRKP--IQ-------YAWMVIFPALAINYLGQGA-LVLSNPE--AIK-DPFY--MMFG-GWFLP 294 (628)
Q Consensus 231 La~TG~EAl~advghF~~~~--i~-------~aw~~v~~~L~l~y~Gq~a-~ll~~~~--~~~-~~f~--~~~p-~~~~~ 294 (628)
-++||+=|=+|--|..+.+. |- ++..+++.+.++-+-|..- .++.|.- .+. |..- ..-| +|...
T Consensus 421 PsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~ 500 (1075)
T KOG2082 421 PSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIV 500 (1075)
T ss_pred CCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCEEEE
T ss_conf 32104531587775534400058613547888888999999999887631310043331320571799993389861554
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEE-ECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999999996030100258999999975998865687-038876571100689999999988877732688898878
Q gi|254780832|r 295 FAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIF-FTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAA 373 (628)
Q Consensus 295 ~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~-~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~a 373 (628)
.--.++|+- |+--..+|++++++..++++-.|=++.. |-+.+++ |..-.+|-+..+-.-+.-++.+.+++.
T Consensus 501 IGsFlST~G---AgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngE-----Pt~aLlLT~~Ice~gILigslD~iApi 572 (1075)
T KOG2082 501 IGSFLSTCG---AGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGE-----PTWALLLTAIICECGILIGSLDLIAPI 572 (1075)
T ss_pred HHHHHHHHH---HHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC-----CCHHHHHHHHHHHHHHEEECHHHHHHH
T ss_conf 267887757---887661275799998852583400122224667799-----559999999999860323005677789
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99-------99999999989999999998358569999999999999999999999985234869999999999999999
Q gi|254780832|r 374 YG-------ISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWT 446 (628)
Q Consensus 374 Yg-------i~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~ 446 (628)
-. ..|.++-.+-|++-.--||-+||..+|. ..+....+++.+.|.++ |---+++..+-.+.+-
T Consensus 573 lsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~-LSflG~sLC~~iMF~~S---------WyyAlvAm~~a~~IYK 642 (1075)
T KOG2082 573 LSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWS-LSFLGASLCLAIMFISS---------WYYALVAMLIAGVIYK 642 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_conf 9999999997776999999985299878541023657-98877999999999988---------8999999999999999
Q ss_pred H--HHHHHHHH-HHHHHCCCCHHHH-HHHHCCCCCC----CCCEEEEEECCCCCHH--HHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 8--99999999-9864248997899-8621167774----3602678617766601--8999987617776337999999
Q gi|254780832|r 447 W--RRGTNLLS-TLTRHADIPIHSF-IISIENSSQQ----VPGTAIFLTSDSQAVP--DALLQNIKHNRILHEQNIILTI 516 (628)
Q Consensus 447 W--~~G~~~~~-~~~~~~~~~~~~f-~~~~~~~~~r----vpGtavflt~~~~~vP--~~l~~~i~~n~~lhe~~vfltV 516 (628)
+ ++|.++.+ +-.+...+....+ +++++.++++ -|-.-|++..+++..+ +.++.+.++.|.=.--.|+.++
T Consensus 643 YiEykGAeKEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlLVll~~~~~~~vk~p~ll~~asqlKaGkGltIv~s~ 722 (1075)
T KOG2082 643 YIEYKGAEKEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLLVLLRLDEDIDVKHPRLLNFASQLKAGKGLTIVGSV 722 (1075)
T ss_pred HHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88624640000223566788999999874125999987877025655315503120123576099886227871899876
Q ss_pred EECC
Q ss_conf 8637
Q gi|254780832|r 517 NTAN 520 (628)
Q Consensus 517 ~~~~ 520 (628)
..-+
T Consensus 723 l~G~ 726 (1075)
T KOG2082 723 LQGT 726 (1075)
T ss_pred ECCC
T ss_conf 3387
No 32
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=79.31 E-value=2.1 Score=20.68 Aligned_cols=60 Identities=30% Similarity=0.379 Sum_probs=36.0
Q ss_pred EEECCCC--CCCHHHHHHHHHHCCCCC----------------CC------CC-----EEEEEEEEEE--EECCCCCHHH
Q ss_conf 9946766--789899999999738998----------------88------62-----4999998888--7268889488
Q gi|254780832|r 544 LFFGYME--EQNVSQALAELRNNGLKF----------------EI------MN-----TSFYLGRRKL--VPTSRAGMPN 592 (628)
Q Consensus 544 ~ryGf~e--~p~i~~~L~~~~~~~i~~----------------~~------~~-----~sfflgre~l--~~~~~~~m~~ 592 (628)
+++|||| +|++++.+.+|.++|.+. |+ .+ ++-+-|++-- ++++...-+.
T Consensus 34 v~~~fmElaePsi~e~l~~~v~~G~~~IiVvP~FL~~G~Hv~~DIP~~lg~~~~~~~~~~~~~gk~v~~~~a~Plg~~pl 113 (125)
T cd03415 34 VYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVYVTEPLADSPL 113 (125)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHCCHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCHH
T ss_conf 58755110699889999999984998199995320688650102654508885674357862694478998489898888
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999972
Q gi|254780832|r 593 WQDHLFIMLST 603 (628)
Q Consensus 593 w~~~lF~~l~r 603 (628)
.-+.+|.-.+|
T Consensus 114 v~~~l~~Rv~~ 124 (125)
T cd03415 114 VKLALFYRVKR 124 (125)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999861
No 33
>TIGR00908 2A0305 ethanolamine permease; InterPro: IPR004757 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment..
Probab=77.79 E-value=4.3 Score=18.68 Aligned_cols=333 Identities=16% Similarity=0.108 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 425778999999999650034-6999999987246642736676128999999999997500018999998459999999
Q gi|254780832|r 107 STVLIALGLAGSALFIGDSMV-TPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWL 185 (628)
Q Consensus 107 ~~~~~~~gligaa~ll~D~iL-TpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf 185 (628)
|+.--+=|-++|-+.+.+|++ ||||-+.=| ..+++.+|+.+++. ++++.=++-..+|-.|.++..++--.+|.+=.
T Consensus 80 rafGp~GGflaG~a~l~Ef~fAppAIA~~IG-AY~~~~fp~~~~~~--aalvfY~vF~~~ni~Gv~~Aa~~~~VvT~vAi 156 (456)
T TIGR00908 80 RAFGPLGGFLAGVAILVEFVFAPPAIALAIG-AYVEVLFPSVEGKL--AALVFYLVFVAVNILGVKEAAKLELVVTLVAI 156 (456)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4105353578989999999860269999886-67643158861789--99999999999999879999999999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCHHHH---HHHHHHCCHHHHHHHHH------HHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999999986501-8744446796899---99998374358999989------999851087874364546711699999
Q gi|254780832|r 186 LMITVSGLIHISD-DWGILAAFNPMYA---LHMVFGKGTISLVVLGS------VFLTITGAEALYADLGHFGRKPIQYAW 255 (628)
Q Consensus 186 ~~i~~~gi~~i~~-~p~vl~a~~P~~~---~~~~~~~~~~g~~~lg~------v~La~TG~EAl~advghF~~~~i~~aw 255 (628)
..+.+....-.-| ||..+-.. |+.+ -+.+..-...| .+.+ -+||+-|+ |++|.=..--||.|-.+.
T Consensus 157 i~L~vF~ga~~phfd~~n~f~g-~~~~atGA~~f~~ga~~G--~faAIPfAIWFfLA~EGv-amaAEE~KnPKrdip~g~ 232 (456)
T TIGR00908 157 IELLVFIGAVAPHFDSANLFKG-GQAAATGADSFKAGAYVG--VFAAIPFAIWFFLAVEGV-AMAAEEAKNPKRDIPKGY 232 (456)
T ss_pred HHHHHHHHHCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCEE--HHHHHHHHHHHHHHHCCC-CCCHHHCCCCCCCCCHHH
T ss_conf 9856522200145223755167-742002110136876411--333326999999986166-313132468864421799
Q ss_pred H---HHHHHHHHHHHHHHHHHHCCHH--HHHHHH-----HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HH
Q ss_conf 9---9999999999747868735924--552036-----87278632899999999999996030100258999999-97
Q gi|254780832|r 256 M---VIFPALAINYLGQGALVLSNPE--AIKDPF-----YMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQA-IH 324 (628)
Q Consensus 256 ~---~v~~~L~l~y~Gq~a~ll~~~~--~~~~~f-----~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qa-i~ 324 (628)
. +++.+|.+.-+-.++-...+.+ ...||- +....+.++--++.+-=++-+|||=-.|-=+||+=--| .|
T Consensus 233 i~ailtL~alA~g~~v~~~Ga~d~k~L~~~n~Plp~al~~i~g~~~~~s~f~~~~GLfGLiASfhgII~gYSRQiFAlsR 312 (456)
T TIGR00908 233 IAAILTLLALALGVLVVAAGAADAKELAGSNDPLPEALEVIYGKSSFLSKFLSLVGLFGLIASFHGIILGYSRQIFALSR 312 (456)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875177542112224689778999987636517999999998999999999999998999999852
Q ss_pred CCCCCCE-EEEECCC-CCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 5998865-6870388-76571100689999999988877732688898878999999999998999999999835856--
Q gi|254780832|r 325 LGFLPRM-KIFFTSE-TFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWK-- 400 (628)
Q Consensus 325 l~~~Pr~-~i~~tS~-~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~-- 400 (628)
-+|+||- ...|+++ .=.+=+=.|++.-+..+-+=-++-+. ..+-=...=-++||+.-.+=-++|.-+...|+|.|
T Consensus 313 ~gYLPe~LskvnPrkk~Pv~AivvpgviG~~~~lt~~liqfG-Gqtlta~ii~~svFGAi~~y~~sMaA~f~LR~~~P~m 391 (456)
T TIGR00908 313 EGYLPEFLSKVNPRKKAPVRAIVVPGVIGIALVLTDELIQFG-GQTLTALIIVVSVFGAIVLYVVSMAAFFKLRKKRPKM 391 (456)
T ss_pred CCCCHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 366513575207787887200212369999999975588733-4133304334467789999999999999971248887
Q ss_pred ---HHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---9999--999999999999999999985234869999999999999999899999
Q gi|254780832|r 401 ---ISKV--IIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTN 452 (628)
Q Consensus 401 ---~~~~--~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~ 452 (628)
.+.. .+.-...++...+++++.+.-= . .++...++.++....+|---
T Consensus 392 eRPyr~p~~i~~p~~ALvla~V~l~t~~y~~---~--~~v~~~~~~fv~l~~yyfly 443 (456)
T TIGR00908 392 ERPYRVPLYILLPAVALVLALVALVTTVYVD---A--RVVASVVVAFVVLIVYYFLY 443 (456)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC---H--HHHHHHHHHHHHHHHHHHHH
T ss_conf 7884276335679999999999988988703---5--89999999999999999999
No 34
>pfam05857 TraX TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.
Probab=75.97 E-value=4.8 Score=18.36 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999975998865687038876571100689999999988877732688898878999999999998999999
Q gi|254780832|r 315 TFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSV 391 (628)
Q Consensus 315 ~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~ 391 (628)
+||+-.-.+.-|+. +||++|.+ |....-....++-+.-.+.+++.. ..+..+|+.|+.+..+.+..
T Consensus 37 afPiF~f~~veGf~-----~hT~nrkk---Yl~RL~ifa~Is~ip~~l~~~~~~---~~~~~NIlfTL~lgl~~l~~ 102 (216)
T pfam05857 37 AFPLFAFVLAENLA-----RPTGNRQR---YLNRLLIFALISEPPFDLLGGLAF---FWWPLNVLFTLALGLQVLWL 102 (216)
T ss_pred HHHHHHHHHHHCCC-----CCCCCHHH---HHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999993036-----68855999---999999999999999999965444---65221999999999999999
No 35
>TIGR00814 stp serine transporter; InterPro: IPR004694 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) family includes well characterised aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This group is specific for hydroxy amino acid transporters and includes the serine permease, SdaC and threonine permease, TdcC, of Escherichia coli.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=72.22 E-value=5.9 Score=17.77 Aligned_cols=302 Identities=10% Similarity=0.109 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 204888989999999999999887410789981389999999872675542----5778999999999650034699999
Q gi|254780832|r 58 VIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRST----VLIALGLAGSALFIGDSMVTPALSV 133 (628)
Q Consensus 58 v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~----~~~~~gligaa~ll~D~iLTpAISV 133 (628)
++=+-|.|-|-+|-..-=-|.-+++.-||.+.++| ...+..|-+|..- .+-+.+++-..+.|+=+|=----|
T Consensus 35 ~l~~maiia~P~Ty~~hr~L~~f~lss~~~~G~Di---T~vV~~hfGK~~G~liT~LYF~ai~~~~liYsv~ITN~~~s- 110 (419)
T TIGR00814 35 VLVLMAIIAYPLTYFAHRALARFVLSSKNPCGEDI---TEVVEEHFGKTWGILITLLYFFAIYPILLIYSVAITNTVAS- 110 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHEECHHH-
T ss_conf 99999999999999999999888634788997897---32654211113678999999999998888740111202799-
Q ss_pred HHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCC---
Q ss_conf 998724664273667612--89999999999975000189999984599999999999999986501-874444679---
Q gi|254780832|r 134 LSAVEGVRYIAPELDNFI--ILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD-DWGILAAFN--- 207 (628)
Q Consensus 134 lSavegl~~~~P~l~~~~--v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~--- 207 (628)
.++.-.---.+.+ ...+++++.+|.++-++|-+-.=|+-++-.+-+.+.+..++++=+=+ |+.++..+.
T Consensus 111 -----fl~~ql~~~~~~R~S~l~~l~l~~~L~~i~~~G~~~~~Ki~~~LV~p~vl~l~~ls~yLiP~Wn~a~l~~~pl~s 185 (419)
T TIGR00814 111 -----FLKNQLGMAPLLRDSGLLSLALILILVAIVLFGEKLLVKIMSFLVFPLVLILLLLSLYLIPHWNGANLTTLPLGS 185 (419)
T ss_pred -----HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf -----998603567775303899999999999999818815776504035899999999999842674244655302311
Q ss_pred HHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---------HHHHH--HHHHHHHHHHHHHHHHHHHC
Q ss_conf 68999-99983743589999899998510878743645467116---------99999--99999999999747868735
Q gi|254780832|r 208 PMYAL-HMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKP---------IQYAW--MVIFPALAINYLGQGALVLS 275 (628)
Q Consensus 208 P~~~~-~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~---------i~~aw--~~v~~~L~l~y~Gq~a~ll~ 275 (628)
....- +.+.+ +-|..+--.+-+.-=.-.+|.=.=.-|+++ ..... ..+..+....+|--.-.+.-
T Consensus 186 ~~~~g~~~~~~---~~wLtiPv~vFSf~hsPiiS~f~~~~r~~Y~~~~~A~~K~~~i~~~A~~~l~~~VmFFvFSC~lsl 262 (419)
T TIGR00814 186 LSFNGNDVFLK---TVWLTIPVMVFSFNHSPIISSFAISKREEYGSKDFAERKCSRIMKIASLILVATVMFFVFSCVLSL 262 (419)
T ss_pred HHCCCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 10146615788---999973487666430021143100353033327999999999999999999999999999887058
Q ss_pred CHHHHHHHHH---------HHCCC--C-----HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCE-EEEECCC
Q ss_conf 9245520368---------72786--3-----2899999999999996030100258999999975998865-6870388
Q gi|254780832|r 276 NPEAIKDPFY---------MMFGG--W-----FLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRM-KIFFTSE 338 (628)
Q Consensus 276 ~~~~~~~~f~---------~~~p~--~-----~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~-~i~~tS~ 338 (628)
.|+....... +...+ + +=...-..+++.+++|=-..++|.|-=.+++++ |-.+.. +.+...+
T Consensus 263 ~p~~~~~AkEQNIsiLS~LAn~~~g~~Gtktt~~~~i~~~~~i~A~~Ai~~SFfG~YlG~~EG~~-G~v~~~l~lk~~~~ 341 (419)
T TIGR00814 263 SPAELVAAKEQNISILSYLANHFNGDGGTKTTAAAWISYAGPIVAIVAISKSFFGHYLGAREGLN-GIVLKSLRLKMKGK 341 (419)
T ss_pred CHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCC
T ss_conf 98899887645906899997067888874103667999999999999999876767788998788-89998731103530
Q ss_pred CCCCCEECHHHHHHHH-HHHHHHHHHCCCHHHHHH
Q ss_conf 7657110068999999-998887773268889887
Q gi|254780832|r 339 TFKGQVFLPSINLFLF-VGVLLFVIGFRHSESLVA 372 (628)
Q Consensus 339 ~~~gqiYip~In~ll~-ia~i~lvl~f~~s~~L~~ 372 (628)
+-+.+.-.-.+-.+++ +.+=.++..+-|.=.++.
T Consensus 342 k~~~~~L~~~~~iF~~sl~~w~v~~~Np~iL~~i~ 376 (419)
T TIGR00814 342 KINIRKLNRAIAIFLVSLTTWIVAYINPSILSFIE 376 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 02146788999999999987733441378789987
No 36
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=70.11 E-value=6.6 Score=17.47 Aligned_cols=31 Identities=13% Similarity=0.567 Sum_probs=25.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2348699999999999999998999999999
Q gi|254780832|r 426 VLDGGYTPLLIASLCIIVMWTWRRGTNLLST 456 (628)
Q Consensus 426 f~~GgW~~lli~~il~~iM~~W~~G~~~~~~ 456 (628)
=.+|||+.++++.++..+..+|++--+.+.+
T Consensus 258 ~i~~G~isiv~Gliiv~iLii~N~kvEv~AR 288 (304)
T COG4059 258 SIQGGWISIVAGLIIVLILIIWNRKVEVKAR 288 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 4556502467779999999874014543255
No 37
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=68.72 E-value=6.7 Score=17.40 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 999852348-69999999999999999899999-99998642
Q gi|254780832|r 421 ANLFKVLDG-GYTPLLIASLCIIVMWTWRRGTN-LLSTLTRH 460 (628)
Q Consensus 421 ~~~~Kf~~G-gW~~lli~~il~~iM~~W~~G~~-~~~~~~~~ 460 (628)
++.+=+|.| |=++|++-.|++.+.++|-|-|| .-++++-.
T Consensus 269 ~~Stf~PyGIAAlVLi~L~V~LIiLYIWLYrRRK~SWKh~~K 310 (315)
T TIGR01478 269 ATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHECK 310 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 887861358999999999999999988885640303566521
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=64.23 E-value=2.7 Score=19.94 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=11.6
Q ss_pred CCEECCCCCCHHHHHHH
Q ss_conf 30457367667899999
Q gi|254780832|r 24 GVVYGDIGTSVLYAFKE 40 (628)
Q Consensus 24 GvV~GDIGTSPLY~~~~ 40 (628)
=+|-||||.||=--+.+
T Consensus 8 V~VLGDiGrSPRMqYHA 24 (415)
T cd03816 8 VLVLGDIGRSPRMQYHA 24 (415)
T ss_pred EEECCCCCCCHHHHHHH
T ss_conf 99816778987889999
No 39
>pfam03222 Trp_Tyr_perm Tryptophan/tyrosine permease family.
Probab=63.90 E-value=8.7 Score=16.69 Aligned_cols=124 Identities=9% Similarity=0.043 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88989999999999999887410789981389999999872675542577899999999965003469999999872466
Q gi|254780832|r 62 VSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVR 141 (628)
Q Consensus 62 lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~ 141 (628)
+=++.|.++......++.+.++.+. +.+ +.+...+..++...++.. .+.++.-|.++.|-. +.+-+-++
T Consensus 39 ~l~~~w~~m~~s~Lll~Ev~l~~~~--~~~---~~~~a~~~LG~~g~~i~~-----~~~~~l~y~ll~AYi-sg~g~il~ 107 (393)
T pfam03222 39 LLILSWFLMLASGLLLLEVYLWYPE--GAS---FNTLAKDLLGKKGNIIAG-----LVYAFLLYILTYAYI-SGGGSILS 107 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--CCC---HHHHHHHHHCHHHHHHHH-----HHHHHHHHHHHHHHH-HCCCHHHH
T ss_conf 9999999999999999999971899--999---899999985847699999-----999999999999999-82418999
Q ss_pred HHCCC-----CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42736-----67612899-999999999750001899999845999999999999999865
Q gi|254780832|r 142 YIAPE-----LDNFIILI-ALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI 196 (628)
Q Consensus 142 ~~~P~-----l~~~~v~i-ai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i 196 (628)
...+. ..+....+ ...+...+.....+.+++..+.+-.++.+-|..+...+..++
T Consensus 108 ~~l~~~~~~~~~~~~~~~~f~~~~~~~v~~g~k~v~~~n~~l~~~~i~~f~~l~~~l~~~i 168 (393)
T pfam03222 108 RVIPEMFGIPWSARAAPLIFTLLFGPFVWAGTKAVDRINRVLIFGKIIAFALVFSGLLPKI 168 (393)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9987734688768999999999999999987899999999999999999999999998862
No 40
>PRK13882 conjugal transfer protein TrbP; Provisional
Probab=63.75 E-value=8.7 Score=16.67 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999997599886568703887657110068999999998887773268889887899999999999899999
Q gi|254780832|r 315 TFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFS 390 (628)
Q Consensus 315 ~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~ 390 (628)
+||+-.-.++.| +-|....||+++.+ |. ++++..|.+.-+=+..-++....-+-.+|..|+.+....+.
T Consensus 46 AfPiF~f~la~n-lareGf~~t~~~~K---Y~---~rL~~falISeiPf~~l~g~~~~~~~~NVlFTl~l~~~~i~ 114 (232)
T PRK13882 46 ALPLFVFVLAYN-LARPGALERGDYGR---TM---KRLALFGLVASVPFVALGGLFGGWWPLNVLFTLLVATATAY 114 (232)
T ss_pred HHHHHHHHHHHH-CCCCCCHHCCCHHH---HH---HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 899999999985-04654021351999---99---99999999995089997065567652899999999999999
No 41
>pfam01235 Na_Ala_symp Sodium:alanine symporter family.
Probab=63.30 E-value=8.9 Score=16.62 Aligned_cols=233 Identities=21% Similarity=0.232 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHH----H-CCCCCC--CHH
Q ss_conf 766789999971477777777899346204888--------98999999---99999998874----1-078998--138
Q gi|254780832|r 31 GTSVLYAFKEALKTTTMNHTLLVERTEVIGLVS--------LMIWVLTI---VVTIKYILLLL----R-ADNDGE--GGI 92 (628)
Q Consensus 31 GTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lS--------li~Wtl~l---iv~vKYv~~~l----~-adn~GE--GGi 92 (628)
+.||.=++.+...++-+ --||-|+-. -+||--+. =...||+...| | -|.||| ||-
T Consensus 16 ~iS~fqAl~tala~~vG-------~GNIaGVA~AI~~GGPGAvFWMWv~al~Gmatkf~E~~La~~yR~~~~~G~~~GGP 88 (415)
T pfam01235 16 DVSSFQALTTSLAGRVG-------TGNIAGVATAIAAGGPGAVFWMWVTAFIGMATAFVESTLAQLYKERDKDGNFRGGP 88 (415)
T ss_pred CCCHHHHHHHHHHHCCC-------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCH
T ss_conf 93779999999986467-------55999999999607948999999999999999999999898850678999980138
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998726755425778999999999650034699999998724664273667612899999999999750001899
Q gi|254780832|r 93 LSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKG 172 (628)
Q Consensus 93 ~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~ 172 (628)
+--. .|..++ |+.-...++...-...+.+-..-+=|+.++.+ ..+ ...++..-+.+.+++. .+=.-|.|+
T Consensus 89 myyi---~~gl~~-k~la~~fai~~~i~~~~~~~~~Q~n~i~~~~~---~~f-~~~~~~~g~~l~~l~~--~VI~GGikr 158 (415)
T pfam01235 89 AYYI---KKGLGM-RWLAILFAVAVIVSFGVIFSGVQANSIADAMS---NAF-GIPPLVTGIVLAILTA--LIIFGGVKR 158 (415)
T ss_pred HHHH---HHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHC-CCCHHHHHHHHHHHHH--HHHHCCHHH
T ss_conf 9999---974431-03899999999999987310898999999999---873-9957999999999999--999847299
Q ss_pred HHHH---HHHHHHHHHHHHHHH-HHHHHHCCCCCCC-----CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998---459999999999999-9986501874444-----679689999998374358999989999851087874364
Q gi|254780832|r 173 VACF---FSPIMVAWLLMITVS-GLIHISDDWGILA-----AFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADL 243 (628)
Q Consensus 173 ~g~~---F~pi~~lwf~~i~~~-gi~~i~~~p~vl~-----a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~adv 243 (628)
++++ ..|.|.+......+. .+.|+-+-|..+. |++|..+. +++.--+=.||+-.++
T Consensus 159 I~~v~~~lVP~Ma~~Yi~~~l~Ii~~n~~~iP~a~~~If~~AF~~~A~~---------------GG~~G~~i~~ai~~Gv 223 (415)
T pfam01235 159 IAAISSIVVPFMAIIYLITALAIIAMNIEKVPDVIGLIFKSAFGFDAAA---------------GGALGATVSKAIMWGV 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---------------HHHHHHHHHHHHHHHH
T ss_conf 9999998999999999999999999869999999999999646956788---------------8899999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHH----HHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 546711699999999999999997478687359245-5203----687278632899999999999996030
Q gi|254780832|r 244 GHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEA-IKDP----FYMMFGGWFLPFAVLTATCATVIASQA 310 (628)
Q Consensus 244 ghF~~~~i~~aw~~v~~~L~l~y~Gq~a~ll~~~~~-~~~~----f~~~~p~~~~~~~v~~at~a~iIaSqa 310 (628)
.-.+.-|=.|+|.-...|..+ .++| ..++.....--.++...|...++.|..
T Consensus 224 ---------------~RGlFSNEAG~Gsa~~ahaaA~t~hPv~QGlv~~~~vFiDTivVCt~TalvIL~tg~ 280 (415)
T pfam01235 224 ---------------KRGLFSNEAGMGSAPNAAAAAHVSHPAKQGLVQMLGIFLDTFIVCTATALVILLTGN 280 (415)
T ss_pred ---------------HHHEECCCCCCCCCHHHHHHCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---------------776001577878527778754899971342100027888887999988799831067
No 42
>pfam10860 DUF2661 Protein of unknown function (DUF2661). This viral family of proteins have no known function.
Probab=59.55 E-value=10 Score=16.20 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 66601899998761777633799999986375636755179999737997999999467667898999999997389988
Q gi|254780832|r 490 SQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNNGLKFE 569 (628)
Q Consensus 490 ~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~V~~~eR~~v~~l~~g~~rv~~ryGf~e~p~i~~~L~~~~~~~i~~~ 569 (628)
.++-+-.+-||++++--.|+-+++-.|..++.|+.|+.++...-. |+|...-. .+.++....-+.|
T Consensus 15 yNt~~~PFWHNi~yha~~y~cyvlYyien~~~~~lP~~~nv~~in-------------FK~~~~~~-~~~~l~~~~~KID 80 (109)
T pfam10860 15 YNTDCYPFWHNILYHARYYKCYVVYYVENEGSLRLPQCENVKFIN-------------FKEVYPER-NMAKLQNVVNKID 80 (109)
T ss_pred ECCCCCCCHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCEEEEE-------------CCCCCCHH-CHHHHHCCCCCCE
T ss_conf 388788604554456503448999998689985687457575787-------------32036421-3065533110100
Q ss_pred CCCEEEEEE
Q ss_conf 862499999
Q gi|254780832|r 570 IMNTSFYLG 578 (628)
Q Consensus 570 ~~~~sfflg 578 (628)
=|+-+..+.
T Consensus 81 YMKL~~l~n 89 (109)
T pfam10860 81 YMKLTILFN 89 (109)
T ss_pred EEEEEEEEC
T ss_conf 589999966
No 43
>TIGR01196 edd phosphogluconate dehydratase; InterPro: IPR004786 Two dehydratases, dihydroxy-acid dehydratase (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (gene edd) have been shown to be evolutionary related . Dihydroxy-acid dehydratase catalyzes the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyzes the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster . This family defines the 6-phosphogluconate dehydratases.; GO: 0004456 phosphogluconate dehydratase activity, 0009255 Entner-Doudoroff pathway.
Probab=54.92 E-value=7.2 Score=17.23 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEE-ECCC
Q ss_conf 99999864248997899862116777436026786-1776
Q gi|254780832|r 452 NLLSTLTRHADIPIHSFIISIENSSQQVPGTAIFL-TSDS 490 (628)
Q Consensus 452 ~~~~~~~~~~~~~~~~f~~~~~~~~~rvpGtavfl-t~~~ 490 (628)
-+.++--.+.++..++.+.+..++- +-||||.|| |.+.
T Consensus 193 A~~RQLFAEGKv~R~ELL~sEm~SY-H~PGTCTFYGTANs 231 (614)
T TIGR01196 193 AKVRQLFAEGKVGREELLKSEMASY-HAPGTCTFYGTANS 231 (614)
T ss_pred HHHCCHHHCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCC
T ss_conf 4310111137566678999985224-84986135475432
No 44
>PRK09395 actP acetate permease; Provisional
Probab=53.01 E-value=13 Score=15.51 Aligned_cols=99 Identities=11% Similarity=0.180 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHCCCCCCEEEE-ECCCCCCCCEECHHHHHHHHHHHHHHHH--HCCCH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 258999999975998865687-0388765711006899999999888777--32688-8988789999999999989999
Q gi|254780832|r 314 GTFSLARQAIHLGFLPRMKIF-FTSETFKGQVFLPSINLFLFVGVLLFVI--GFRHS-ESLVAAYGISVSGTMVISTIMF 389 (628)
Q Consensus 314 g~Fsl~~qai~l~~~Pr~~i~-~tS~~~~gqiYip~In~ll~ia~i~lvl--~f~~s-~~L~~aYgi~V~~tf~lTt~l~ 389 (628)
|---..+.++..|.+.+.--+ +.|+ +.|+-+..+- ...++++.+++ .+++. -.-.-.++.++..+=..-.+++
T Consensus 375 gLlLa~ssaishDlY~~~i~~g~ase--~~~v~vsRia-~vvvgvvAi~Lai~~~~~nIa~lV~lAFaiaAsa~fP~lll 451 (551)
T PRK09395 375 GLTLAGASAVSHDLYANVIKKGKATE--REELRVSKIT-TLVLGVVAIILGILFEKQNIAFMVGLAFAIAASANFPVLLL 451 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999889999999999845899887--8999999999-99999999999861688849999999999999898999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999835856999999999999999999
Q gi|254780832|r 390 SVFVHVCWKWKISKVIIFLFPLLSIEMTF 418 (628)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 418 (628)
..|||+- +..-++.....-++..+++
T Consensus 452 glfWkR~---T~~GAiaGml~Gl~~~~~l 477 (551)
T PRK09395 452 SMYWKGL---TTRGAVIGGWLGLISAVVL 477 (551)
T ss_pred HHHHCCC---CHHHHHHHHHHHHHHHHEE
T ss_conf 9841778---7898999999899988327
No 45
>KOG3796 consensus
Probab=52.93 E-value=13 Score=15.50 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 466427366761289999999999975000189999984
Q gi|254780832|r 139 GVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFF 177 (628)
Q Consensus 139 gl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F 177 (628)
++...+|..++-.|.+.+.+=.+...++|+|-+.+|.-+
T Consensus 50 ~~~~~Yp~fQDvhvMifvGfGFLmtflrRygfSsV~fnl 88 (442)
T KOG3796 50 GLVASYPLFQDVHVMIFIGFGFLMTFLRRYGFSSVGFNL 88 (442)
T ss_pred CHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 124406652534651123478999999980725887999
No 46
>PRK09953 wcaD putative colanic acid biosynthesis protein; Provisional
Probab=52.19 E-value=14 Score=15.43 Aligned_cols=20 Identities=10% Similarity=0.331 Sum_probs=13.1
Q ss_pred EECCCCEEEEEEEECCCCCC
Q ss_conf 97379979999994676678
Q gi|254780832|r 533 EKISEHFSRVELFFGYMEEQ 552 (628)
Q Consensus 533 ~~l~~g~~rv~~ryGf~e~p 552 (628)
+.+++|.|-.++++|+-.-.
T Consensus 322 ~tiDNGLYlLi~YF~W~~vl 341 (405)
T PRK09953 322 KTIDNGLYLLIIYFSWFAVL 341 (405)
T ss_pred CCCCCCEEEEEEHHHHHHHH
T ss_conf 60258628976168899999
No 47
>PRK13476 cytochrome b6-f complex subunit IV; Provisional
Probab=51.44 E-value=14 Score=15.35 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=32.1
Q ss_pred HHHHCCCCC--CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHCCHHHHHHHHH---HHCCCCHHHHHHH
Q ss_conf 787436454--6711699999999999999----997478687359245520368---7278632899999
Q gi|254780832|r 237 EALYADLGH--FGRKPIQYAWMVIFPALAI----NYLGQGALVLSNPEAIKDPFY---MMFGGWFLPFAVL 298 (628)
Q Consensus 237 EAl~advgh--F~~~~i~~aw~~v~~~L~l----~y~Gq~a~ll~~~~~~~~~f~---~~~p~~~~~~~v~ 298 (628)
+.++-+||| .|+|.=-+-...++|..++ +..|-+...=.+...-+||+- .+.|+|.+++...
T Consensus 16 ~kl~kgmghn~ygepawpndlly~fpv~i~gt~~~~~glav~~P~~~gEPANP~~TP~hI~PEWYFlp~y~ 86 (160)
T PRK13476 16 AKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMLGEPADPFATPLEILPEWYLYPVFQ 86 (160)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99872268777788888622799878999999999987876386546999997679977886226778999
No 48
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=49.94 E-value=2.1 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=21.5
Q ss_pred HHHHHHHCCCCCE---EEEEEEEEECCCCCCCCCCEEEEE-ECCCCEEEEEEEE
Q ss_conf 9998761777633---799999986375636755179999-7379979999994
Q gi|254780832|r 497 LLQNIKHNRILHE---QNIILTINTANQPRIPKEKRFVCE-KISEHFSRVELFF 546 (628)
Q Consensus 497 l~~~i~~n~~lhe---~~vfltV~~~~~P~V~~~eR~~v~-~l~~g~~rv~~ry 546 (628)
-..++.||.+||| ++|++ =-.|.-+|..-|=|.-. +=.+.+-|..++|
T Consensus 547 tfksL~~nC~L~e~~P~Yvim--y~~d~~FIRq~EVY~A~v~~~~p~drmrVYF 598 (939)
T TIGR00596 547 TFKSLEDNCVLEELKPRYVIM--YEPDVSFIRQVEVYKASVRPLRPLDRMRVYF 598 (939)
T ss_pred HHHHHHHCCCCCCCCCCEEEE--ECCCCCCEEEEEEEEEEECCCCCCCCEEEEE
T ss_conf 334320033100278535898--5788792214788988853886955125778
No 49
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927 It has been shown that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF). Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=49.28 E-value=15 Score=15.13 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=99.2
Q ss_pred HHHHHH--HHCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCC--CC
Q ss_conf 872466--427366761289--99999999997500018999998459999999999999998650187--44446--79
Q gi|254780832|r 136 AVEGVR--YIAPELDNFIIL--IALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDW--GILAA--FN 207 (628)
Q Consensus 136 avegl~--~~~P~l~~~~v~--iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p--~vl~a--~~ 207 (628)
.+|.=+ +-.....||.++ +-..++.+|.+.++.+... ++.++-..|.+..-+..-..|.+..-| +-..+ .|
T Consensus 66 ~vD~T~~I~rwGKFRPw~L~Ga~p~~~~~vL~F~~~~~~~~-~n~~~~~v~a~~tYi~~g~~Ys~~niPy~sl~p~~T~d 144 (470)
T TIGR00792 66 IVDRTRNITRWGKFRPWLLIGAIPFAIVLVLLFTTPDFSAT-GNPIGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD 144 (470)
T ss_pred HHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 75244588879643300020178999999999824575543-11778999999999998466221013621035432578
Q ss_pred HHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHH--------HHHHHHHHHHHHHHH-
Q ss_conf 6899999983743589999----8999985108787436454-6711699999999--------999999997478687-
Q gi|254780832|r 208 PMYALHMVFGKGTISLVVL----GSVFLTITGAEALYADLGH-FGRKPIQYAWMVI--------FPALAINYLGQGALV- 273 (628)
Q Consensus 208 P~~~~~~~~~~~~~g~~~l----g~v~La~TG~EAl~advgh-F~~~~i~~aw~~v--------~~~L~l~y~Gq~a~l- 273 (628)
|. .|..+..++-+ |+.+. -+-+==+-+-.|. .+..+-+..|.+. ......|+++--=..
T Consensus 145 ~~------ER~~l~~~r~~~a~~G~~~~-~~~~~P~~~~~~~~~~~~~~~~G~~~~~~i~~~~g~~~~~~c~~~tkE~~~ 217 (470)
T TIGR00792 145 PR------ERESLSTFRRFGATLGGLLV-AVIVLPLVSYFGGISAGEDDKLGWFMFALILALIGVVLLIICFFGTKERVS 217 (470)
T ss_pred CC------CCEEHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 31------00212018789999999999-999999998606654688885058999999999999999987167732131
Q ss_pred -HC------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----C---------------CCCCHHH-HHHHHHHCC
Q ss_conf -35------9245520368727863289999999999999603----0---------------1002589-999999759
Q gi|254780832|r 274 -LS------NPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQ----A---------------VITGTFS-LARQAIHLG 326 (628)
Q Consensus 274 -l~------~~~~~~~~f~~~~p~~~~~~~v~~at~a~iIaSq----a---------------~isg~Fs-l~~qai~l~ 326 (628)
.+ +....++.|..+..+.-+ ..+.++.+...+|.| . .+.+.+. .....+..=
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~N~qL-~~l~~~~l~~~~a~~i~~~~~~YYf~Yvlg~~~lf~~~~~~~~~~~~l~~~~ 296 (470)
T TIGR00792 218 VSEIPKKSEKKLSLKKIFKALFKNDQL-LILCLAYLFYLLAFNIKNGVQVYYFTYVLGDPELFSILGLIAFIGAGLIGVL 296 (470)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 033211356778689999998528889-9999999999999998765630234577466789999999999999999998
Q ss_pred CCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCC
Q ss_conf 988656870388765711006899999999888777326
Q gi|254780832|r 327 FLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFR 365 (628)
Q Consensus 327 ~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~ 365 (628)
++|++.-+ -++++.|.-++ ++++...++..+.+
T Consensus 297 l~P~l~k~----~grk~~~~~~~--~~~~~g~l~~~~~~ 329 (470)
T TIGR00792 297 LFPRLVKK----FGRKRLFLIGI--LLMVLGLLILFFVG 329 (470)
T ss_pred HHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf 78778876----12599999999--99999999998731
No 50
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=48.57 E-value=15 Score=15.06 Aligned_cols=258 Identities=13% Similarity=0.121 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9975000189999984---5999999999999999865018744446796899999983743589999899998510878
Q gi|254780832|r 162 LFMLQSHGTKGVACFF---SPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEA 238 (628)
Q Consensus 162 Lf~iq~rGt~~~g~~F---~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EA 238 (628)
=..+=.+|.+++.+++ +|.+++-++.+..--+.+.......... | .-..+.....|..+.+...+++.--+
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~--p----~~~~~~~~~~w~~~~~~~~~v~~~At 255 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGEL--P----AGTVSGSNSSWAFLAGIAAWVGFWAT 255 (497)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--C----CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998717999989999863299999999999999852786642237--7----77778630199999999999987788
Q ss_pred HHCCCCCCCCH--H---HHHH--HHHHHHHHHHHHHH----HHHHHHC-----CHHHHHHHHHHHCCCC-HHHHHHHHHH
Q ss_conf 74364546711--6---9999--99999999999974----7868735-----9245520368727863-2899999999
Q gi|254780832|r 239 LYADLGHFGRK--P---IQYA--WMVIFPALAINYLG----QGALVLS-----NPEAIKDPFYMMFGGW-FLPFAVLTAT 301 (628)
Q Consensus 239 l~advghF~~~--~---i~~a--w~~v~~~L~l~y~G----q~a~ll~-----~~~~~~~~f~~~~p~~-~~~~~v~~at 301 (628)
++-+.|-|.|- + .... |.+-.+.++.+..| -++..+- ||..+.+.|-.-.-.. +.-..+.++|
T Consensus 256 l~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iat 335 (497)
T COG1953 256 LALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVAT 335 (497)
T ss_pred HHCCCCHHHCCCCCHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 86377312032688113466121112278999988985576666654086037889999860551399999999999998
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
Q ss_conf 99999603010025899999997599886568703887657110068999999998887773268889-88789999999
Q gi|254780832|r 302 CATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSES-LVAAYGISVSG 380 (628)
Q Consensus 302 ~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~-L~~aYgi~V~~ 380 (628)
+.+=|+ +|..+.++-+. +.+|+. -+ .+|..|+-. .+.-++.-.-..++++. ..-+=+.|++.
T Consensus 336 i~~Ni~-aN~vsp~~D~s------~l~Pk~----in--~krg~liaA----~ial~~~PW~l~~s~s~f~~~L~~yg~~L 398 (497)
T COG1953 336 ISTNIA-ANIVSPGYDLS------ALFPKY----IN--IKRGGLIAA----IIALLICPWNLLESSSSFTTFLGSYGVFL 398 (497)
T ss_pred HHHHHH-HCCCCHHHHHH------HHCCCC----CC--HHHHHHHHH----HHHHHHCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 731577-51578177798------856330----34--255699999----99999757687748419999999998988
Q ss_pred HHHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999899999999983------------------585699999999999999999--99999985234869999999999
Q gi|254780832|r 381 TMVISTIMFSVFVHVC------------------WKWKISKVIIFLFPLLSIEMT--FLGANLFKVLDGGYTPLLIASLC 440 (628)
Q Consensus 381 tf~lTt~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~v--~~~~~~~Kf~~GgW~~lli~~il 440 (628)
+=...-.+.-++..|+ +.+|++..+....+...--.- ++.-.+.++-..+|+.=++.+.+
T Consensus 399 gpiaGVmiaDyflirk~~~~v~~ly~~~G~y~y~~G~N~rA~~A~~~G~~~~l~Gv~~~~~~~~~~~~~~wF~G~~ia~~ 478 (497)
T COG1953 399 GPIAGVMIADYFLVRKGRLNLDELYTEPGEYYYYGGWNWRAFAAYLCGVAPSLPGVGKVPPGLPPLYYYGWFVGVLLAFL 478 (497)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87889999888764147447688618998767736768999999986421365511017855321330118999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780832|r 441 II 442 (628)
Q Consensus 441 ~~ 442 (628)
+.
T Consensus 479 iY 480 (497)
T COG1953 479 IY 480 (497)
T ss_pred HH
T ss_conf 99
No 51
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=47.68 E-value=13 Score=15.58 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=26.1
Q ss_pred EEEEECCCC--CCCHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 999946766--789899999999738998886249999
Q gi|254780832|r 542 VELFFGYME--EQNVSQALAELRNNGLKFEIMNTSFYL 577 (628)
Q Consensus 542 v~~ryGf~e--~p~i~~~L~~~~~~~i~~~~~~~sffl 577 (628)
..+++||+| .|++++.++++.++|.+.=+.-+-|+.
T Consensus 33 ~~v~~~f~e~~~P~i~eai~~l~~~G~~~ivvvP~~l~ 70 (101)
T cd03409 33 FPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CCEEHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 82414379771999999999999769867999864300
No 52
>smart00794 AgrD Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons con
Probab=46.66 E-value=7.5 Score=17.09 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=15.5
Q ss_pred EEEEEECCCCCCCHHHHHHHH
Q ss_conf 999994676678989999999
Q gi|254780832|r 541 RVELFFGYMEEQNVSQALAEL 561 (628)
Q Consensus 541 rv~~ryGf~e~p~i~~~L~~~ 561 (628)
...-..||.|+|.||+.|-+.
T Consensus 23 ~~~~C~~yfDEPEVPkELt~l 43 (45)
T smart00794 23 GYNPCTGYFDEPEVPKELTDL 43 (45)
T ss_pred CCCCCCCCCCCCCCCHHHHHH
T ss_conf 578654337798686999863
No 53
>pfam05931 AgrD Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons cont
Probab=44.26 E-value=8.6 Score=16.71 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCCHHHHHHHH
Q ss_conf 999994676678989999999
Q gi|254780832|r 541 RVELFFGYMEEQNVSQALAEL 561 (628)
Q Consensus 541 rv~~ryGf~e~p~i~~~L~~~ 561 (628)
...-..||.|||.||+.|-+.
T Consensus 23 ~~~~C~~yfDEPEVPkELt~l 43 (45)
T pfam05931 23 GYNPCTGYFDEPEVPKELTDL 43 (45)
T ss_pred CCCCCCCCCCCCCCCHHHHHH
T ss_conf 578653337798686999863
No 54
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=42.12 E-value=8.4 Score=16.78 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=9.8
Q ss_pred HHHHCCCCCCCCHH
Q ss_conf 78743645467116
Q gi|254780832|r 237 EALYADLGHFGRKP 250 (628)
Q Consensus 237 EAl~advghF~~~~ 250 (628)
=-|++||||.|+|+
T Consensus 172 ADLaasmGH~GnPs 185 (249)
T TIGR02311 172 ADLAASMGHLGNPS 185 (249)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 24434015688869
No 55
>PRK12488 acetate permease; Provisional
Probab=37.07 E-value=23 Score=13.93 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEE-ECCCCCCCCEECHHHHHHHH-HHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100258999999975998865687-03887657110068999999-998887773268-889887899999999999899
Q gi|254780832|r 311 VITGTFSLARQAIHLGFLPRMKIF-FTSETFKGQVFLPSINLFLF-VGVLLFVIGFRH-SESLVAAYGISVSGTMVISTI 387 (628)
Q Consensus 311 ~isg~Fsl~~qai~l~~~Pr~~i~-~tS~~~~gqiYip~In~ll~-ia~i~lvl~f~~-s~~L~~aYgi~V~~tf~lTt~ 387 (628)
+.+|---..+.++..|.+.+.--+ +-||+ .|+-+..+-.+.. +.++.+-+.+++ .-.....++.++..+...-.+
T Consensus 370 TvsgllLa~ssaishDlY~~~~~~g~ase~--~~v~vsRi~~v~v~~vai~la~~~~~~~Ia~lv~laf~~aAsa~~Pvl 447 (549)
T PRK12488 370 VVAGLALSGASAVSHDLYACVIRKGQASEA--QEMRVSKIATLGIGLLAVVLGLMFESQNIAFLSGLVLAIAASVNFPVL 447 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999999999985466789858--875899999999999999999947987099999999999998877999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998358569999999999999999999
Q gi|254780832|r 388 MFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL 419 (628)
Q Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 419 (628)
++..|||+- +..-++.....-+++.++++
T Consensus 448 ll~LfWkr~---t~~GAiaGmi~Gl~~~~~~i 476 (549)
T PRK12488 448 FLSMFWKGL---TTRGAVAGSYAGLVSAVVLV 476 (549)
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHHHHH
T ss_conf 999830737---78989999999999987851
No 56
>KOG2568 consensus
Probab=37.06 E-value=23 Score=13.93 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4869999999999999999899999
Q gi|254780832|r 428 DGGYTPLLIASLCIIVMWTWRRGTN 452 (628)
Q Consensus 428 ~GgW~~lli~~il~~iM~~W~~G~~ 452 (628)
.-+|- ++.-.+++.+|+.||--..
T Consensus 422 ~a~W~-~l~~~iLvvI~~LWrPS~n 445 (518)
T KOG2568 422 TAFWP-LLFFLILVVIMFLWRPSQN 445 (518)
T ss_pred HCCHH-HHHHHHHHHHHHHCCCCCC
T ss_conf 02279-9999999999872688888
No 57
>PTZ00042 stevor; Provisional
Probab=36.98 E-value=23 Score=13.92 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999989999999
Q gi|254780832|r 431 YTPLLIASLCIIVMWTWRRGTNLL 454 (628)
Q Consensus 431 W~~lli~~il~~iM~~W~~G~~~~ 454 (628)
=+++++.++++.+.++|-|-|++.
T Consensus 269 alVLlilaVvLIILYIWLyrRRKn 292 (304)
T PTZ00042 269 ALVLLILAVVLIILYIWLYRRRKN 292 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999984124
No 58
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=36.85 E-value=23 Score=13.91 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=23.8
Q ss_pred EEEECCCC--CCCHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 99946766--7898999999997389988862499999
Q gi|254780832|r 543 ELFFGYME--EQNVSQALAELRNNGLKFEIMNTSFYLG 578 (628)
Q Consensus 543 ~~ryGf~e--~p~i~~~L~~~~~~~i~~~~~~~sfflg 578 (628)
.+.+||+| +|++++.++++..+|.+. +--.-||+.
T Consensus 34 ~v~~~fle~~~P~l~e~l~~l~~~G~~~-ivvvP~fL~ 70 (117)
T cd03414 34 RVETAFAAATRPSLPEALERLRALGARR-VVVLPYLLF 70 (117)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCE-EEEEEHHHC
T ss_conf 1888775367998999999999769975-999762312
No 59
>PRK10484 putative symporter YidK; Provisional
Probab=36.37 E-value=24 Score=13.86 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHCCCCCH
Q ss_conf 1389999999872675542
Q gi|254780832|r 90 GGILSLLALLLKKIPKRST 108 (628)
Q Consensus 90 GGi~aL~sl~~~~~~~~~~ 108 (628)
-|..+....+.++-+++.+
T Consensus 99 ~~~~T~pe~le~Ry~~~~r 117 (528)
T PRK10484 99 SGIATIPDFLEERYDKTTR 117 (528)
T ss_pred CCCCCHHHHHHHHCCCHHH
T ss_conf 3887659999865466068
No 60
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.21 E-value=24 Score=13.84 Aligned_cols=41 Identities=7% Similarity=0.254 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 699999999999999998999999999864248997899862116777
Q gi|254780832|r 430 GYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQ 477 (628)
Q Consensus 430 gW~~lli~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~~~~~ 477 (628)
||-++++..+++.+|+...+-++++.+..+ +++.++.+++.
T Consensus 2 ~~~~iim~vv~~~~~ffmiRpQkK~qke~q-------~ml~~L~kGde 42 (120)
T PRK06531 2 GFPTIIMFVVMLGLIFFMQRQQKKQAQERQ-------NQLNAIQKGDE 42 (120)
T ss_pred CCHHHHHHHHHHHHHHHEECHHHHHHHHHH-------HHHHHCCCCCE
T ss_conf 822899999999999860374889999999-------99972579998
No 61
>pfam02471 OspE Borrelia outer surface protein E. This is a family of outer surface proteins (Osp) from the Borrelia spirochete. The family includes OspE, and OspEF-related proteins (Erp). These proteins are coded for on different circular plasmids in the Borrelia genome.
Probab=36.12 E-value=20 Score=14.38 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=17.9
Q ss_pred CCCEEEEEEEECCCCCCCHHHHH
Q ss_conf 79979999994676678989999
Q gi|254780832|r 536 SEHFSRVELFFGYMEEQNVSQAL 558 (628)
Q Consensus 536 ~~g~~rv~~ryGf~e~p~i~~~L 558 (628)
..|-|+..++|||+|+|+.....
T Consensus 63 egGsFktslYYGYk~eqs~~ngi 85 (108)
T pfam02471 63 EGGSFKTSLYYGYKEEQSNANGI 85 (108)
T ss_pred CCCCCEEEEEEECCCCCCCCCCC
T ss_conf 27851035774114442423353
No 62
>PRK07668 hypothetical protein; Validated
Probab=34.63 E-value=25 Score=13.68 Aligned_cols=20 Identities=20% Similarity=0.462 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999999999899
Q gi|254780832|r 430 GYTPLLIASLCIIVMWTWRR 449 (628)
Q Consensus 430 gW~~lli~~il~~iM~~W~~ 449 (628)
||+.++.-.+.+.+|+..++
T Consensus 195 gw~~~l~l~vp~~~~~~f~~ 214 (248)
T PRK07668 195 GWFGLLYLIIPLSIMFLFKT 214 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999998
No 63
>pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.
Probab=34.47 E-value=25 Score=13.66 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99983585699999999999999999999999852348699999999---999999998999999999864248
Q gi|254780832|r 392 FVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIAS---LCIIVMWTWRRGTNLLSTLTRHAD 462 (628)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~---il~~iM~~W~~G~~~~~~~~~~~~ 462 (628)
|..++..-..|....|+..|+..-+.++++ -..|-+|++++.-. .+|.-.++|-|-..-+...+++++
T Consensus 128 ~lL~~~GAs~WtlLAF~LAFlLAIilLIIA---v~LhqaW~T~LvDL~WLlLFLaILIW~Y~Hgprhsdehhhd 198 (382)
T pfam05297 128 EILWRLGATIWQLLAFFLAFFLAIILLIIA---LYLQQNWWTLLVDLLWLLLFLAILIWMYYHGPRHSDEHHHD 198 (382)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999996638999999999999999999999---99999999999999999999999999751277765333466
No 64
>pfam04725 PsbR Photosystem II 10 kDa polypeptide PsbR. This protein is associated with the oxygen-evolving complex of photosystem II. Its function in photosynthesis is not known. The C-terminal hydrophobic region functions as a thylakoid transfer signal but is not removed.
Probab=33.56 E-value=19 Score=14.51 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 766789999971477777777899346204888989999999999
Q gi|254780832|r 31 GTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTI 75 (628)
Q Consensus 31 GTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~v 75 (628)
|-||+|+-++- ++++ ..-+-|.--|++|+.++...+
T Consensus 49 gYSPIy~~~~w-s~sG--------d~Y~gGttgL~~WavtlaglL 84 (99)
T pfam04725 49 GYSPIYTPDEW-SPSG--------DVYVGGTTGLAIWAVTLAGLL 84 (99)
T ss_pred CCCCCCCHHHC-CCCC--------CEEECCCCHHHHHHHHHHHHH
T ss_conf 64776673115-8888--------766267100899999999997
No 65
>KOG2941 consensus
Probab=33.43 E-value=18 Score=14.71 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=12.7
Q ss_pred CCEEEEEEEECCCCCCCHHHHHH
Q ss_conf 99799999946766789899999
Q gi|254780832|r 537 EHFSRVELFFGYMEEQNVSQALA 559 (628)
Q Consensus 537 ~g~~rv~~ryGf~e~p~i~~~L~ 559 (628)
.++-||.+..-.-|.-|-|..|.
T Consensus 315 ~~~~~v~~~tpWL~aEDYP~ll~ 337 (444)
T KOG2941 315 KNLQHVQVCTPWLEAEDYPKLLA 337 (444)
T ss_pred HCCCCEEEEECCCCCCCCHHHHH
T ss_conf 15321036502232110066763
No 66
>pfam11241 DUF3043 Protein of unknown function (DUF3043). Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=33.17 E-value=27 Score=13.53 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 6899999999888777326
Q gi|254780832|r 347 PSINLFLFVGVLLFVIGFR 365 (628)
Q Consensus 347 p~In~ll~ia~i~lvl~f~ 365 (628)
|--.|++-++.+++++.|-
T Consensus 76 ~i~e~flp~al~vlv~~~v 94 (168)
T pfam11241 76 NLGEFFMPVALVVLVLMLV 94 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 0699999999999999960
No 67
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=32.94 E-value=27 Score=13.51 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---HCCHHHHHHH
Q ss_conf 2899999999999750001-89999984599999999999999986501874444679689999998---3743589999
Q gi|254780832|r 151 IILIALGILVLLFMLQSHG-TKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVF---GKGTISLVVL 226 (628)
Q Consensus 151 ~v~iai~il~~Lf~iq~rG-t~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~---~~~~~g~~~l 226 (628)
+-.+.-..++.++..|+-. .+++||++.|++++-...+.+ ..+....+...+.++.|.-+-+. .+|...+.++
T Consensus 122 ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i---~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaL 198 (431)
T COG1114 122 IFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVI---AAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDAL 198 (431)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCCCHHHHHCHHHHHHHCCHHHHHHH
T ss_conf 99999999999999589779999887886999999999999---998578887666637777281877775005789999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHH----H----HHHHHHHHHHHHH
Q ss_conf 8999985108787436454671169999----9----9999999999974
Q gi|254780832|r 227 GSVFLTITGAEALYADLGHFGRKPIQYA----W----MVIFPALAINYLG 268 (628)
Q Consensus 227 g~v~La~TG~EAl~advghF~~~~i~~a----w----~~v~~~L~l~y~G 268 (628)
++..-+.-=++|+-+-.=.=+|.-++.. + .+.+.-+.+.|+|
T Consensus 199 Aal~FgivIv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG 248 (431)
T COG1114 199 AALAFGIVIVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG 248 (431)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999836675789999999999999999999999999836
No 68
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=31.91 E-value=28 Score=13.40 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=7.1
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 676678989999999
Q gi|254780832|r 547 GYMEEQNVSQALAEL 561 (628)
Q Consensus 547 Gf~e~p~i~~~L~~~ 561 (628)
|+--..|||+.|...
T Consensus 75 G~H~~~DIP~~l~~~ 89 (130)
T PRK00923 75 GVHTKRDIPKILGLD 89 (130)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 824220018898776
No 69
>TIGR01156 cytb6/f_IV cytb6/f complex subunit IV; InterPro: IPR005870 This entry describes subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of oxygenic photosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants, mediating electron transfer between photosystem II (PSII) and photosystem I (PSI) reaction centre complexes. The cyt b6f complex consists of a cytochrome b core, in addition to cytochrome f, Rieske 2Fe-2S, and subunits IV, V, VI, VII. The complex has a central quinone exchange cavity, which is defined by two monomers that resemble the respiratory cytochrome bc1 complex . Cyt b6f has three prosthetic groups not found in cytbc1: chlorophyll-a, beta-carotene and a structurally unique covalently bound haem. The haem is thought to function in cyclic electron transport via anionic ferredoxin. Each monomer of the complex contains a molecule of chlorophyll-a and beta-carotene. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. ; GO: 0045156 electron transporter transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0009775 photosynthetic electron transport in cytochrome b6/f.
Probab=31.81 E-value=28 Score=13.39 Aligned_cols=66 Identities=23% Similarity=0.416 Sum_probs=43.3
Q ss_pred HHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHH---HHHHH---HHCCCCHHHHHHHHHHH
Q ss_conf 787436454--671169999999999999999747868-73592455---20368---72786328999999999
Q gi|254780832|r 237 EALYADLGH--FGRKPIQYAWMVIFPALAINYLGQGAL-VLSNPEAI---KDPFY---MMFGGWFLPFAVLTATC 302 (628)
Q Consensus 237 EAl~advgh--F~~~~i~~aw~~v~~~L~l~y~Gq~a~-ll~~~~~~---~~~f~---~~~p~~~~~~~v~~at~ 302 (628)
+-+..+||| +|+|.=-+....++|..++.-+....- -.-+|..+ +|||. ++.|+|.+||.+++--.
T Consensus 16 ~kla~~mGhnyyGePaWPndlly~fP~~ilG~~~~~~glavl~Pa~~GePa~PfatPleilPeWy~~P~fqilr~ 90 (160)
T TIGR01156 16 AKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTLACIVGLAVLDPALIGEPADPFATPLEILPEWYLYPVFQILRV 90 (160)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999864264447888761468999899999899998888762212306888631241554013577779999997
No 70
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=31.46 E-value=29 Score=13.35 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC--CCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999899999999986424899789986211--67774360267861776660189999876177763
Q gi|254780832|r 431 YTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIE--NSSQQVPGTAIFLTSDSQAVPDALLQNIKHNRILH 508 (628)
Q Consensus 431 W~~lli~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~--~~~~rvpGtavflt~~~~~vP~~l~~~i~~n~~lh 508 (628)
|..+++..++..+=+.|.+ +++.++.+++..+--+..+ .++|.|+|- =.-...-+-..+.+
T Consensus 193 ~~v~~~l~~~a~~D~~~qr-----~~y~~~LkMtkQEvKdE~Kq~EGdP~vKgR-----------iRq~qr~~ar~rMm- 255 (352)
T TIGR00328 193 LLVLLLLLVIAVFDYFFQR-----WQYIKSLKMTKQEVKDELKQSEGDPEVKGR-----------IRQMQREAARRRMM- 255 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHCCCCHHHHHHHHHCCCCCCCHHHH-----------HHHHHHHHHHHHHH-
T ss_conf 9999999999998699999-----999872367768887774126948443688-----------99999999999998-
Q ss_pred EEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEE--CCCCCCC
Q ss_conf 37999999863756367551799997379979999994--6766789
Q gi|254780832|r 509 EQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFF--GYMEEQN 553 (628)
Q Consensus 509 e~~vfltV~~~~~P~V~~~eR~~v~~l~~g~~rv~~ry--Gf~e~p~ 553 (628)
.++|. ..|--.+|.+|-|-++| |.|+-|-
T Consensus 256 ----------~~VPk------AdVvITNPTHyAVALkY~~~~m~AP~ 286 (352)
T TIGR00328 256 ----------QEVPK------ADVVITNPTHYAVALKYDPGKMKAPV 286 (352)
T ss_pred ----------HHCCC------CCEEEECCCEEEEEEEECCCCCCCCE
T ss_conf ----------74468------97896376013455641488898887
No 71
>pfam01566 Nramp Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the inte
Probab=31.45 E-value=29 Score=13.35 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHC--C-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999887410--7-89981389999999872675542577899999999965003469999999872466
Q gi|254780832|r 65 MIWVLTIVVTIKYILLLLRA--D-NDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVR 141 (628)
Q Consensus 65 i~Wtl~liv~vKYv~~~l~a--d-n~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~ 141 (628)
..|.+.+-.-++|+.-.+.+ - -.||| |..+++++.+|+..++....+.-+. +.|-+--+.....|++
T Consensus 15 LLW~vlls~i~~~~~q~~~~Rlg~vTg~~----l~~~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~G~a~~l~ 84 (365)
T pfam01566 15 LLWVLLLSNLMAIVLQELSARLGLVTGKG----LAELIRERFGRPVGWLLWILAELAN------AATDLAEVIGGAIALN 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEECCCC----HHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_conf 99999999999999999987954003997----9999998818048999999999999------9999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 427366761289999999999975000189999984599
Q gi|254780832|r 142 YIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180 (628)
Q Consensus 142 ~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi 180 (628)
..++--...-++++......+..++++|-|+.-+++...
T Consensus 85 ll~gi~~~~~~~i~~~~~~~il~~~~~~y~~~E~~~~~l 123 (365)
T pfam01566 85 LLFGIPLYIGVVITAVLVLLLLFLQRGGYRRLERVIIAL 123 (365)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 985997689999999999999999817707899999999
No 72
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=31.44 E-value=29 Score=13.35 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 488898999999999999988741078998--138999999987267554257789999999996500346999999987
Q gi|254780832|r 60 GLVSLMIWVLTIVVTIKYILLLLRADNDGE--GGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAV 137 (628)
Q Consensus 60 G~lSli~Wtl~liv~vKYv~~~l~adn~GE--GGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSav 137 (628)
--+|+..|.+.|.-.+||-.+.-.-+|.|| -|-|. ||+.--.+..++.. -.+..|||--|||-=-+|-.
T Consensus 118 ~kls~~~~~~vLlHiiK~RGyl~~~kN~ge~~~ke~g--ALl~gv~~N~qk~f-------dl~qiGD~~at~a~ls~~~~ 188 (1088)
T COG3513 118 SKLSLRLWYLVLLHIIKHRGYLIERKNEGEKDDKEFG--ALLKGVKQNFQKLF-------DLAQIGDYYATPAELSAKMI 188 (1088)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHHHHHHHCCCCCH-------HHHHCCCHHCCHHHHHHHHH
T ss_conf 4035999999999999862652224565654215888--99986301100300-------57750412236466678876
Q ss_pred HH
Q ss_conf 24
Q gi|254780832|r 138 EG 139 (628)
Q Consensus 138 eg 139 (628)
+-
T Consensus 189 ~k 190 (1088)
T COG3513 189 EK 190 (1088)
T ss_pred HH
T ss_conf 53
No 73
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=31.27 E-value=29 Score=13.33 Aligned_cols=104 Identities=8% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHC
Q ss_conf 87278632899999999999996030100258999999975998865687038876571100689999999988877732
Q gi|254780832|r 285 YMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGF 364 (628)
Q Consensus 285 ~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f 364 (628)
.+..|+|+.-. +..+.+|++ -.++++.....+..+..|.+-|.+-.. .++++++..+..+ ....++.+.+....
T Consensus 313 ~~~lp~~l~gl-~~a~ilAA~---mST~~s~l~~~ss~~~~Diy~~~~~~~-~~~~~~~~r~~ri-~~~i~g~~~~~~a~ 386 (479)
T PRK09442 313 LKVLPPFAAGI-FLAAPMAAI---MSTVDSQLLQSSSTIIKDLYLNYRPKQ-MANETKIKRISAV-ITLILGLLVLLAAL 386 (479)
T ss_pred HHHCCHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 99762999999-999999999---999999999999999999999854877-7668999999999-99999999999998
Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68889887--8999999999998999999999
Q gi|254780832|r 365 RHSESLVA--AYGISVSGTMVISTIMFSVFVH 394 (628)
Q Consensus 365 ~~s~~L~~--aYgi~V~~tf~lTt~l~~~~~~ 394 (628)
...+.+.. .++.+....-..--.+...+|+
T Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~p~llgl~wk 418 (479)
T PRK09442 387 KPPDMIIWLNLFAFGGLEAVFLWPIVLGLYWE 418 (479)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 24219999999999999999999999999908
No 74
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; InterPro: IPR012750 Members of this family are the WecA enzymes of enterobacterial common antigen (ECA) biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyse the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown to be critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyse the same reaction as WecA. ; GO: 0000287 magnesium ion binding, 0016780 phosphotransferase activity for other substituted phosphate groups, 0030145 manganese ion binding, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=30.95 E-value=23 Score=13.92 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=12.4
Q ss_pred HHCCC-CCCEEEEECCCCCCCCEECHHHHHHHHHH
Q ss_conf 97599-88656870388765711006899999999
Q gi|254780832|r 323 IHLGF-LPRMKIFFTSETFKGQVFLPSINLFLFVG 356 (628)
Q Consensus 323 i~l~~-~Pr~~i~~tS~~~~gqiYip~In~ll~ia 356 (628)
++||. +=|..-+..+|-++-.|-= .|.|+|.-+
T Consensus 198 LNLGiplGrk~KVFMGDAGS~~IGF-TViWLLl~~ 231 (349)
T TIGR02380 198 LNLGIPLGRKFKVFMGDAGSTLIGF-TVIWLLLEA 231 (349)
T ss_pred HHCCCCCCCCCCEECCCCCHHHHHH-HHHHHHHHC
T ss_conf 8466634688603115600157889-999998720
No 75
>pfam05525 Branch_AA_trans Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.
Probab=30.90 E-value=29 Score=13.29 Aligned_cols=109 Identities=23% Similarity=0.363 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---HHCCHHHHHHHHHHHHH
Q ss_conf 9999999750001-8999998459999999999999998650187444467968999999---83743589999899998
Q gi|254780832|r 157 GILVLLFMLQSHG-TKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMV---FGKGTISLVVLGSVFLT 232 (628)
Q Consensus 157 ~il~~Lf~iq~rG-t~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~---~~~~~~g~~~lg~v~La 232 (628)
..++.++..|+-- ++.+||+.-|..++-+..+...|+.+ ..+...+.++.|..+-+ ..+|.+.+.++++..-+
T Consensus 126 F~i~~~l~~~psklvd~iGK~LTP~LL~~l~ilii~~i~~---p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg 202 (428)
T pfam05525 126 FAIALWLSLNPSKIVDRVGKFLTPILLVLLFILVIAAIIN---PLGEIGAASGAYTSHPFIKGFLEGYQTMDALAALAFG 202 (428)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999918533999999788899999999999999947---7788777745666457999999786416788999999
Q ss_pred HHHHHHHHCCCCCCCCHHHH-HHH---HHHHHHHHHHHHHH
Q ss_conf 51087874364546711699-999---99999999999747
Q gi|254780832|r 233 ITGAEALYADLGHFGRKPIQ-YAW---MVIFPALAINYLGQ 269 (628)
Q Consensus 233 ~TG~EAl~advghF~~~~i~-~aw---~~v~~~L~l~y~Gq 269 (628)
..=++++-+. |.=.++.+. ... .....+|.+-|.|-
T Consensus 203 ~iii~~i~~~-g~~~~~~~~k~t~~ag~ia~~~L~~vY~gL 242 (428)
T pfam05525 203 IVIVNAIKSK-GVTTPKEITKYTIKAGLIAAIGLALIYGGL 242 (428)
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999984-899889999999999999999999999999
No 76
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=28.32 E-value=10 Score=16.20 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=7.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 68889488999999999
Q gi|254780832|r 585 TSRAGMPNWQDHLFIML 601 (628)
Q Consensus 585 ~~~~~m~~w~~~lF~~l 601 (628)
.+++.-..|++++..-+
T Consensus 545 t~r~~~~~~~q~l~~~~ 561 (566)
T COG1165 545 TDRSDGAQLHQALLAQV 561 (566)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 38667899999999998
No 77
>PRK10519 hypothetical protein; Provisional
Probab=27.91 E-value=33 Score=12.96 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 98724664273667612899999999999750001-899999845999999
Q gi|254780832|r 135 SAVEGVRYIAPELDNFIILIALGILVLLFMLQSHG-TKGVACFFSPIMVAW 184 (628)
Q Consensus 135 Savegl~~~~P~l~~~~v~iai~il~~Lf~iq~rG-t~~~g~~F~pi~~lw 184 (628)
.|-.|...+..++.|-++ ---+++..+|.-| .+-.|++|+|+|-+|
T Consensus 14 GArKG~~Ia~~~~lPnvl----mafviI~~L~~tGll~ilg~vf~PvM~iF 60 (151)
T PRK10519 14 GARKGFTIATTNLLPNVL----MAFVIIQALNITGLLDLVGHIFGPVMAIF 60 (151)
T ss_pred HHHCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 775334124844507999----99999999998309999999888888860
No 78
>KOG3764 consensus
Probab=27.76 E-value=25 Score=13.66 Aligned_cols=192 Identities=20% Similarity=0.210 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 446796899999983743589999899998510878743645467116999999-9999999999747868735924552
Q gi|254780832|r 203 LAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIK 281 (628)
Q Consensus 203 l~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~i~~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~~ 281 (628)
+-|+.-.|..-|+.|. +-++|+.| +.|-.=|+-|| +|.+.+-|-..+ ..+..+.+ |-.+ .| ...
T Consensus 152 lFafg~sy~~l~vAR~----LQgvgsA~-~~tsglamlAd--~f~~d~er~~vmGialgfisl-----G~lv--gP-pfG 216 (464)
T KOG3764 152 LFAFGNSYPMLFVARS----LQGVGSAF-ADTSGLAMLAD--VFPEDNERGSVMGIALGFISL-----GVLV--GP-PFG 216 (464)
T ss_pred HHHHCCHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHC-----CCEE--CC-CCC
T ss_conf 9987051078999999----86443888-87533899998--715530444789999998750-----3321--58-744
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHH---HHHHH
Q ss_conf 036872786328999999999999960301002589999999759988656870388765711006899999---99988
Q gi|254780832|r 282 DPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFL---FVGVL 358 (628)
Q Consensus 282 ~~f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll---~ia~i 358 (628)
-..|+..+.. -|..++++++.+ ..++++=-+++.+..-.+.. ++ +..--++ .+.++
T Consensus 217 GilYe~~Gk~--aPFlVL~~v~Ll--------------d~~L~l~vi~p~~~~~~~~~-~~----~~~~~Ll~dP~I~~~ 275 (464)
T KOG3764 217 GILYEFAGKS--APFLVLAIVLLL--------------DGALQLLVIEPTEMDPDSTE-QG----TPMWSLLMDPYILLI 275 (464)
T ss_pred CCHHHHCCCC--CCHHHHHHHHHH--------------HHHHHHHEECCCCCCCCCCC-CC----CCHHHHHHCCHHHHH
T ss_conf 0057644875--748999999999--------------99999865583346864466-67----328998847247555
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8777326888988789999999999989999999998---3585699999999999999999999999852348699999
Q gi|254780832|r 359 LFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHV---CWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLL 435 (628)
Q Consensus 359 ~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~ll 435 (628)
...+.+.++ +.+|+--|+ ..|+.+ ..+|..+.+......+-+++.-++.....|++|+-|+-..
T Consensus 276 agai~~~n~-----------~lafLePtl--slwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~ 342 (464)
T KOG3764 276 AGAITFSNS-----------SLAFLEPTL--SLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSL 342 (464)
T ss_pred HCCHHHCCC-----------HHHHHCCCC--HHHHHHHCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 330221121-----------088757510--8899976168875012461102531310673079998766733589998
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780832|r 436 IASLCIIV 443 (628)
Q Consensus 436 i~~il~~i 443 (628)
...+.+.+
T Consensus 343 ~gl~~~G~ 350 (464)
T KOG3764 343 GGLATVGV 350 (464)
T ss_pred HHHHHHHH
T ss_conf 77999988
No 79
>pfam11086 DUF2878 Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=27.56 E-value=33 Score=12.92 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999852348699999999999999998999999
Q gi|254780832|r 403 KVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNL 453 (628)
Q Consensus 403 ~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~ 453 (628)
..........++|..+....+..|+++.+.|+=+...=.....+.+..-+-
T Consensus 48 l~~~~~~lG~~~Ds~l~~~Gv~~f~~~~~~PlWl~~LW~~Fa~tl~~sl~w 98 (152)
T pfam11086 48 LLLLLALLGILLDSLLVALGVFDFAGSSLFPLWLALLWLLFATTLNHSLAW 98 (152)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998795640898723899999999999999999999
No 80
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.98 E-value=34 Score=12.85 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=17.6
Q ss_pred EEEECCCC--CCCHHHHHHHHHHCCCC
Q ss_conf 99946766--78989999999973899
Q gi|254780832|r 543 ELFFGYME--EQNVSQALAELRNNGLK 567 (628)
Q Consensus 543 ~~ryGf~e--~p~i~~~L~~~~~~~i~ 567 (628)
.++.+|+| +|++.+.++++.++|.+
T Consensus 33 ~V~~afle~~~P~l~~~l~~l~~~G~~ 59 (101)
T cd03416 33 EVELAFLELAEPSLAEALDELAAQGAT 59 (101)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 698665404799899999999966998
No 81
>pfam06166 DUF979 Protein of unknown function (DUF979). This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=26.50 E-value=35 Score=12.80 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCC
Q ss_conf 999999872675542577899999999965003-------4699999998724664273
Q gi|254780832|r 94 SLLALLLKKIPKRSTVLIALGLAGSALFIGDSM-------VTPALSVLSAVEGVRYIAP 145 (628)
Q Consensus 94 aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~i-------LTpAISVlSavegl~~~~P 145 (628)
|.+++--|..+||-.--++-++.|-..++||++ +-.++.++++..+++...+
T Consensus 16 a~~~~~Dk~np~R~gt~lFW~l~g~~F~~G~~lp~~~~G~lvl~malla~~~~v~~g~~ 74 (308)
T pfam06166 16 AVLSLRDRTNPKRFGTALFWGLLALTFLFGDYLPAVVVGVLVLAMALLAGFGQVGIGKY 74 (308)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99997177798502019999999999982653512788899999999997498778998
No 82
>pfam06086 Pox_A30L_A26L Orthopoxvirus A26L/A30L protein. This family consists of several Orthopoxvirus A26L and A30L proteins. The Vaccinia A30L gene is regulated by a late promoter and encodes a protein of approximately 9 kDa. It is thought that the A30L protein is needed for vaccinia virus morphogenesis, specifically the association of the dense viroplasm with viral membranes.
Probab=26.13 E-value=15 Score=15.10 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99984599999999999999986501
Q gi|254780832|r 173 VACFFSPIMVAWLLMITVSGLIHISD 198 (628)
Q Consensus 173 ~g~~F~pi~~lwf~~i~~~gi~~i~~ 198 (628)
...+||.|||.|+.+.+--....+.+
T Consensus 179 ksl~fG~PMYwWy~v~~~~iy~~iy~ 204 (220)
T pfam06086 179 KFMFIGSPMYLWFNVNGSHVYHEIYD 204 (220)
T ss_pred CCEEECCCHHHHCCCCCHHHHHHHHC
T ss_conf 32586442765214781789999857
No 83
>KOG1288 consensus
Probab=26.12 E-value=35 Score=12.76 Aligned_cols=263 Identities=12% Similarity=0.071 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 577899999999965003469999999872---46642736676128999999999997500018999998459999999
Q gi|254780832|r 109 VLIALGLAGSALFIGDSMVTPALSVLSAVE---GVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWL 185 (628)
Q Consensus 109 ~~~~~gligaa~ll~D~iLTpAISVlSave---gl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf 185 (628)
.+...|-+-.|++..-|..-|-+++...-. ......|.=.-|+..-|..++.+.+.+-.-|..-.+|.=-....+--
T Consensus 152 llFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is 231 (945)
T KOG1288 152 LLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVIS 231 (945)
T ss_pred EHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20147877400332443108888741743357740012888830466799999999999998308988743013456777
Q ss_pred HHHHHHHHHHHHCCCCCC----------------------------CCCCHHHHHHHHHHCCHHHHH-HHHHHHHHHHHH
Q ss_conf 999999998650187444----------------------------467968999999837435899-998999985108
Q gi|254780832|r 186 LMITVSGLIHISDDWGIL----------------------------AAFNPMYALHMVFGKGTISLV-VLGSVFLTITGA 236 (628)
Q Consensus 186 ~~i~~~gi~~i~~~p~vl----------------------------~a~~P~~~~~~~~~~~~~g~~-~lg~v~La~TG~ 236 (628)
+|++..-+--++.+|.-- ..+-|+|..++-. .+..-|. .||-.|-+.||.
T Consensus 232 ~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~-~~~~~F~~~FgV~F~g~tGi 310 (945)
T KOG1288 232 VSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTG-GGYEDFASTFGVFFPGTTGI 310 (945)
T ss_pred HHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCEEHHHHHEEEECCCHHH
T ss_conf 77754310257864655778899985435763046613764778766310432245457-87111665210100460454
Q ss_pred HHHHCCCCCCCCHHHH--------HHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHH
Q ss_conf 7874364546711699--------9999-99999999997478687359245520368727863289999999999-999
Q gi|254780832|r 237 EALYADLGHFGRKPIQ--------YAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTATCA-TVI 306 (628)
Q Consensus 237 EAl~advghF~~~~i~--------~aw~-~v~~~L~l~y~Gq~a~ll~~~~~~~~~f~~~~p~~~~~~~v~~at~a-~iI 306 (628)
-|=.|=-|-.++|+.. .+.+ +++..++++ +| .- ......+|-..-+.+-.+..|.+....++ ++.
T Consensus 311 mAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~fl-m~--~t--~~r~~Lq~dy~v~~~isl~p~fi~iGi~sttlf 385 (945)
T KOG1288 311 MAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFL-MG--CT--VPRTLLQNDYDVMMHISLHPPFILIGILSTTLF 385 (945)
T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HC--CC--CCHHHHHHCHHHEEECCCCCHHHHHHHHHHHHH
T ss_conf 01777674224865457763037999999999999999-61--68--663776523222254034530899899999999
Q ss_pred HCCCCCCCHHHHHHHHHHCCCCCCEEE-EECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 603010025899999997599886568-7038876571100689999999988877732688898878999999999998
Q gi|254780832|r 307 ASQAVITGTFSLARQAIHLGFLPRMKI-FFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVIS 385 (628)
Q Consensus 307 aSqa~isg~Fsl~~qai~l~~~Pr~~i-~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lT 385 (628)
.|-.-+.|+=.++....+++.+|-+-. .+-+.+...-.+.-++-|++.-. +++-|+.+.++.. ++.+|++|
T Consensus 386 ss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvql----vll~g~~N~iA~~----it~~FLlt 457 (945)
T KOG1288 386 SSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQL----VLLWGDINKIASM----ITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCEEEEEHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHH
T ss_conf 999977618999999864462102100101155689834650479999999----9997368899999----99999999
No 84
>KOG2083 consensus
Probab=24.63 E-value=37 Score=12.58 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998874107899813899999998726755----42577899999999965003469999999872466427
Q gi|254780832|r 69 LTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKR----STVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIA 144 (628)
Q Consensus 69 l~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~----~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~ 144 (628)
+++|+-..-.-++-|-+-+| ||+ |-|+.|..+.. -..+-..|...|++++. ++-.-.|..|-.-.
T Consensus 75 vt~it~lSa~~I~t~~~vk~-Gg~---yflis~slg~efggsigiIy~f~~aVa~am~~-------vgfaEsv~~l~~~~ 143 (643)
T KOG2083 75 VTLITVLSAIAIVTRGQVKS-GGV---YFLISRSLGPEFGGSIGIIYAFANAVATAMYV-------VGFAESVAHLFETE 143 (643)
T ss_pred HHHHHHHHHHEEEECCEECC-CCE---EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_conf 99999875730121543503-857---99997225530020159999999999888743-------33899999999863
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CCCCCCHHHH
Q ss_conf 366761289999999999975000189999984599999999999999986501874-------------4446796899
Q gi|254780832|r 145 PELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWG-------------ILAAFNPMYA 211 (628)
Q Consensus 145 P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~p~-------------vl~a~~P~~~ 211 (628)
. ...+-.|+.+-+++|..+|.-|.+=..|+=-....+-.+.++-. +.|.+-.|. .-.+++|.+.
T Consensus 144 s--~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f-~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~ 220 (643)
T KOG2083 144 S--KEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADF-LVGSFFSPNEFSSGFFGYRADIFVENLNPDID 220 (643)
T ss_pred C--HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHCCCCCCCCHHHCCCCCCCCCC
T ss_conf 3--77751345899999888622020448999999999999999876-63210375441366555312222557898747
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 999983743589999899998510878743645467116
Q gi|254780832|r 212 LHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKP 250 (628)
Q Consensus 212 ~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~ 250 (628)
.+..-|..||--|-|.||+=|=.|=-|--+.|.
T Consensus 221 ------~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq 253 (643)
T KOG2083 221 ------PGYTFFSVFAVFFPAATGILAGANISGDLKDPQ 253 (643)
T ss_pred ------CCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCH
T ss_conf ------887437653110200342412531047877732
No 85
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=22.92 E-value=18 Score=14.71 Aligned_cols=50 Identities=10% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCCCCCCCEEEEEECC-----CCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
Q ss_conf 6777436026786177-----6660189999876177763379999998637563
Q gi|254780832|r 474 NSSQQVPGTAIFLTSD-----SQAVPDALLQNIKHNRILHEQNIILTINTANQPR 523 (628)
Q Consensus 474 ~~~~rvpGtavflt~~-----~~~vP~~l~~~i~~n~~lhe~~vfltV~~~~~P~ 523 (628)
....+.||.--++++. .|..|.+....-.|-++-.+.+=+|+.+=.|.+.
T Consensus 371 ~~~sklPG~Fe~~s~g~~sienDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~ 425 (493)
T TIGR01788 371 AKLSKLPGPFEILSDGRESIENDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDAD 425 (493)
T ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 9860699845887178754334567740123313641227897779885368778
No 86
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=22.76 E-value=41 Score=12.35 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 348699999999999999998999999999864248997899862116777
Q gi|254780832|r 427 LDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQ 477 (628)
Q Consensus 427 ~~GgW~~lli~~il~~iM~~W~~G~~~~~~~~~~~~~~~~~f~~~~~~~~~ 477 (628)
..|+|..++...+++.+||.--.--+.++++++ .+++.++..++.
T Consensus 15 ~~~~~~~ll~~ili~~vfYfl~iRPQ~Kr~ke~------~~m~~~L~~Gd~ 59 (107)
T PRK05585 15 QGSGLTSLLPLVVFFAIFYFLIIRPQQKRQKEH------KKMLSSLAKGDE 59 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHCCCCCE
T ss_conf 997679999999999999987426488999999------999984589999
No 87
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=21.99 E-value=29 Score=13.28 Aligned_cols=22 Identities=0% Similarity=-0.203 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 0189999876177763379999
Q gi|254780832|r 493 VPDALLQNIKHNRILHEQNIIL 514 (628)
Q Consensus 493 vP~~l~~~i~~n~~lhe~~vfl 514 (628)
+|.++...-+--+.=|+.+|+.
T Consensus 514 ~~~v~~~~~~E~~~GrQaYvv~ 535 (721)
T TIGR00643 514 IDIVYEFIEEEIAKGRQAYVVY 535 (721)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6899999999983289089996
No 88
>pfam02009 Rifin_STEVOR Rifin/stevor family. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens.
Probab=21.94 E-value=42 Score=12.24 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999899999999986
Q gi|254780832|r 434 LLIASLCIIVMWTWRRGTNLLSTLT 458 (628)
Q Consensus 434 lli~~il~~iM~~W~~G~~~~~~~~ 458 (628)
++|..+++.|-++|||-|+++.+.-
T Consensus 256 viIVLVMvIIYLILRYRRKKKMkKK 280 (289)
T pfam02009 256 LIIVLVMLIIYLILRYRRKKKMKKK 280 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987321250899
No 89
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=21.48 E-value=36 Score=12.69 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=13.1
Q ss_pred HHHCCCCHHHHCCCCCCCE-EEEEE
Q ss_conf 9724659788709882457-89887
Q gi|254780832|r 601 LSTYAEDPSDYFHLPANRV-VEIVS 624 (628)
Q Consensus 601 l~rna~~~~~~f~LP~~rv-vEiG~ 624 (628)
|=.+-+..+++|+|.++++ +|+||
T Consensus 212 lGe~GrGtV~HFGL~y~~v~~qvGT 236 (392)
T TIGR01825 212 LGEKGRGTVKHFGLEYDKVDIQVGT 236 (392)
T ss_pred CCCCCCCEEECCCCCCCCEEEEECC
T ss_conf 4778871353037541646788555
No 90
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.71 E-value=45 Score=12.08 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=3.9
Q ss_pred CCEEEEEEEE
Q ss_conf 6337999999
Q gi|254780832|r 507 LHEQNIILTI 516 (628)
Q Consensus 507 lhe~~vfltV 516 (628)
.++.+-+++.
T Consensus 203 vP~di~iigf 212 (269)
T cd06288 203 IPQDVSVVGF 212 (269)
T ss_pred CCCCEEEEEE
T ss_conf 9998899998
No 91
>KOG3643 consensus
Probab=20.42 E-value=45 Score=12.04 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=54.1
Q ss_pred HHHCCCCCCCHHHHHHH-HHHCCCCCCEEEEECCCCCCC----CEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99603010025899999-997599886568703887657----1100689999999988877732688898878999999
Q gi|254780832|r 305 VIASQAVITGTFSLARQ-AIHLGFLPRMKIFFTSETFKG----QVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVS 379 (628)
Q Consensus 305 iIaSqa~isg~Fsl~~q-ai~l~~~Pr~~i~~tS~~~~g----qiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~ 379 (628)
+=.+|-+|.+.+...+. .-+.|.++|+.+...=.|..| |+|+|.+ .+-+++=+-.++-. ++-.+=-++|++
T Consensus 205 i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~-LiVilSWVSFWin~---~a~pARv~lGIT 280 (459)
T KOG3643 205 IELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPST-LIVILSWVSFWINR---DASPARVALGIT 280 (459)
T ss_pred EECCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEECCHH-HHHHHHHHHHHHCC---CCCHHHEEECEE
T ss_conf 43164688999998889997136611699999998203279986300225-66677677766445---651131010200
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999989999999998358569999999
Q gi|254780832|r 380 GTMVISTIMFSVFVHVCWKWKISKVIIF 407 (628)
Q Consensus 380 ~tf~lTt~l~~~~~~~~~~~~~~~~~~~ 407 (628)
+.-|+||++.. .....-|.+..+++=.
T Consensus 281 TVLTMTTl~t~-~n~slPrvSYVKAiDi 307 (459)
T KOG3643 281 TVLTMTTLMTS-TNESLPRVSYVKAIDV 307 (459)
T ss_pred HHHHHHHHHHH-HHCCCCCCCCEEEEHH
T ss_conf 37757777762-1023887410131322
No 92
>pfam08634 Pet127 Mitochondrial protein Pet127. Pet127 has been implicated in mitochondrial RNA stability and/or processing and is localized to the mitochondrial membrane.
Probab=20.23 E-value=45 Score=12.05 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=10.9
Q ss_pred HCCCCCCCCCEEEEEEC
Q ss_conf 11677743602678617
Q gi|254780832|r 472 IENSSQQVPGTAIFLTS 488 (628)
Q Consensus 472 ~~~~~~rvpGtavflt~ 488 (628)
+...++|.||+++|=-.
T Consensus 149 LDcyDprLPGtG~FDLK 165 (274)
T pfam08634 149 LDCYDPRLPGTGVFDLK 165 (274)
T ss_pred HCCCCCCCCCCCEEEEC
T ss_conf 13379989999736301
Done!