Query gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 628 No_of_seqs 195 out of 803 Neff 5.8 Searched_HMMs 33803 Date Wed Jun 1 17:28:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780832.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3gia_A Uncharacterized protei 99.6 5.7E-10 1.7E-14 82.1 33.8 362 73-460 55-433 (444) 2 >3l1l_A Arginine/agmatine anti 99.5 8.9E-10 2.6E-14 80.9 28.6 340 20-388 13-371 (445) 3 >3bkd_A Transmembrane domain o 37.4 19 0.00057 14.0 1.9 16 55-70 8-23 (26) 4 >3hlz_A Uncharacterized protei 31.8 6.7 0.0002 17.0 -1.2 12 19-30 62-73 (132) 5 >2kih_A Matrix protein 2; S31N 26.0 31 0.0009 12.7 1.9 17 54-70 11-27 (43) 6 >1waz_A MERF; protein structur 23.6 25 0.00074 13.3 0.6 25 110-134 5-31 (46) 7 >1udx_A The GTP-binding protei 19.9 40 0.0012 12.0 2.0 46 521-566 1-54 (82) 8 >1qgo_A CBIK protein, anaerobi 15.7 50 0.0015 11.3 2.9 24 544-567 37-61 (106) 9 >1vra_B Arginine biosynthesis 15.3 51 0.0015 11.3 3.3 41 548-588 124-164 (202) 10 >2rdd_B UPF0092 membrane prote 15.1 52 0.0015 11.2 3.5 29 429-457 1-29 (37) No 1 >>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C (A:) Probab=99.58 E-value=5.7e-10 Score=82.11 Aligned_cols=362 Identities=11% Similarity=0.031 Sum_probs=194.8 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999988741078998138999999987267554257789999999996500346999999987246642736676128 Q gi|254780832|r 73 VTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFII 152 (628) Q Consensus 73 v~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v 152 (628) +..-|..+. .....+||...- ..+..++. .|-..+-....++.+..+.......+.+....|....... T Consensus 55 ~~~~~ael~--~~~p~~gg~~~~---~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (444) T 3gia_A 55 VAYSYTKLG--AKIVSNAGPIAF---IHKAIGDN------IITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTF 123 (444) T ss_dssp HHHHHHHHH--TTCCCTTTHHHH---HHHHHCSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH T ss_pred HHHHHHHHH--HHCCCCCCHHHH---HHHHHCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 999999999--964899709999---99995818------9999999999998877899999999987500023456653 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999999750001899999845999999999999999865---01874444--67968999999837435899998 Q gi|254780832|r 153 LIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI---SDDWGILA--AFNPMYALHMVFGKGTISLVVLG 227 (628) Q Consensus 153 ~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i---~~~p~vl~--a~~P~~~~~~~~~~~~~g~~~lg 227 (628) ...+..+........+........+.-...+....+...+.... ........ ...|..... .+.++. T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 195 (444) T 3gia_A 124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSG--------MIFASA 195 (444) T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHH--------HHHHHH T ss_pred CHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CHHHHH T ss_conf 324667666530204420125788888899998866278899761000025765432223455554--------123555 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHH-HHHC-CHHH-H---HHH----HHHHCCCCHHHH Q ss_conf 9999851087874364546711699999--9999999999974786-8735-9245-5---203----687278632899 Q gi|254780832|r 228 SVFLTITGAEALYADLGHFGRKPIQYAW--MVIFPALAINYLGQGA-LVLS-NPEA-I---KDP----FYMMFGGWFLPF 295 (628) Q Consensus 228 ~v~La~TG~EAl~advghF~~~~i~~aw--~~v~~~L~l~y~Gq~a-~ll~-~~~~-~---~~~----f~~~~p~~~~~~ 295 (628) ..+-+.+|.|+..+-.+..++|.-+... ..........|..-.. .... .++. . .++ +....+++.... T Consensus 196 ~~~~~~~G~~~~~~~a~E~k~p~k~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (444) T 3gia_A 196 IFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLL 275 (444) T ss_dssp HGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHCCCHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHH T ss_conf 43320233100000001110233321210001224530356688987603467233301222222111111223016888 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999603010025899999997599886568703887657110068999999998887773268889887899 Q gi|254780832|r 296 AVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYG 375 (628) Q Consensus 296 ~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYg 375 (628) +.+...++.+-..++...+.-+++....++|.+|+. +.+++++. . -.+......+++..+.+.+-+.+++++. T Consensus 276 ~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 348 (444) T 3gia_A 276 ISIGALFSISSAMNATIYGGANVAYSLAKDGELPEF-FERKVWFK----S--TEGLYITSALGVLFALLFNMEGVASITS 348 (444) T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSS-CCTTSCCS----C--THHHHHHHHHHHHHHHHSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH-HCCCCCCC----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 776776630578999998866455435405915411-10147887----7--5146899999999999973999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999989999999998358569999999999999999999999985234869999999999999999899999999 Q gi|254780832|r 376 ISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS 455 (628) Q Consensus 376 i~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~ 455 (628) ++......+......+..+++.+.++............+-+............--........+++.....|++.++... T Consensus 349 ~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (444) T 3gia_A 349 AVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFS 428 (444) T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC T ss_conf 99999999999999999885277888603899999999999999998615999999999999999999987403463267 Q ss_pred HHHHH Q ss_conf 98642 Q gi|254780832|r 456 TLTRH 460 (628) Q Consensus 456 ~~~~~ 460 (628) +..++ T Consensus 429 ~~~~~ 433 (444) T 3gia_A 429 NNMYV 433 (444) T ss_dssp GGGTT T ss_pred CCCEE T ss_conf 88443 No 2 >>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:) Probab=99.49 E-value=8.9e-10 Score=80.89 Aligned_cols=340 Identities=13% Similarity=0.068 Sum_probs=196.5 Q ss_pred HHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 97323045736766789999971477777777899346204888989999-99999999988741078998138999999 Q gi|254780832|r 20 FESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVL-TIVVTIKYILLLLRADNDGEGGILSLLAL 98 (628) Q Consensus 20 ~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl-~liv~vKYv~~~l~adn~GEGGi~aL~sl 98 (628) ++..+..+|.+-.+-+++......+.++ -..++.++..+ .+....-|.....+. ..+||... - T Consensus 13 ~~~~~l~~~~~ig~g~f~~~g~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~ael~~~~--p~~gg~~~---~ 76 (445) T 3l1l_A 13 IPVTLMVSGAIMGSGVFLLPANLASTGG-----------IAIYGWLVTIIGALGLSMVYAKMSFLD--PSPGGSYA---Y 76 (445) T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHCT-----------HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCTTTHHH---H T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH---H T ss_conf 9999999999999999999999999999-----------999999999999999999999999975--89980999---9 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 987267554257789999999996500346999999987246642736676--128999999999997500018999998 Q gi|254780832|r 99 LLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN--FIILIALGILVLLFMLQSHGTKGVACF 176 (628) Q Consensus 99 ~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~--~~v~iai~il~~Lf~iq~rGt~~~g~~ 176 (628) ..|..++ ..|...+-....++....+.......+.+....|.... ......+.++.....+|..|.+..++. T Consensus 77 ~~~~~g~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (445) T 3l1l_A 77 ARRCFGP------FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRV 150 (445) T ss_dssp HHHHSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_pred HHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999683------8999999999999999999999999875543166458806889999999999999999868989999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHH Q ss_conf 45999999999999999865018744446796899999983743589999899998510878743645467116--9999 Q gi|254780832|r 177 FSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKP--IQYA 254 (628) Q Consensus 177 F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~--i~~a 254 (628) ....+.+-...+...................+. ..........+..+...+-+.+|.|+..+-.+..++|. +..+ T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~p~~~~p~a 227 (445) T 3l1l_A 151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWN---VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445) T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC--------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH T ss_pred HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH T ss_conf 999999998743577760100346886667878---88777501699999999999843654202167641721100354 Q ss_pred HHH-----HHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC Q ss_conf 999-----99999999974786873592455203----687278632899999999999996030100258999999975 Q gi|254780832|r 255 WMV-----IFPALAINYLGQGALVLSNPEAIKDP----FYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHL 325 (628) Q Consensus 255 w~~-----v~~~L~l~y~Gq~a~ll~~~~~~~~~----f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l 325 (628) ... .....+..+.........+......+ +....+.+.-+.+.....++.+-...+.+.+.-+++.+..++ T Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 307 (445) T 3l1l_A 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 33104234678999999999646587750556700899998244105556568887775320356877741677998846 Q ss_pred CCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998865687038876571100689999999988877732-----688898878999999999998999 Q gi|254780832|r 326 GFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGF-----RHSESLVAAYGISVSGTMVISTIM 388 (628) Q Consensus 326 ~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f-----~~s~~L~~aYgi~V~~tf~lTt~l 388 (628) |.+|+. .+.+.++....+.+.....+..++..+.. ...+.+.+...++...+..+.... T Consensus 308 g~lP~~----~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~ 371 (445) T 3l1l_A 308 GLFPPI----FARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAA 371 (445) T ss_dssp TSSCGG----GGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHH----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987776----7645999891789999999999999999961389999999999999999999999999 No 3 >>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} (A:) Probab=37.42 E-value=19 Score=14.03 Aligned_cols=16 Identities=25% Similarity=0.987 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 3462048889899999 Q gi|254780832|r 55 RTEVIGLVSLMIWVLT 70 (628) Q Consensus 55 ~~~v~G~lSli~Wtl~ 70 (628) ..+|+|++-||.|.|- T Consensus 8 aasiigilhlilwild 23 (26) T 3bkd_A 8 AASIMGILHLILWILD 23 (26) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999997 No 4 >>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} (A:138-269) Probab=31.81 E-value=6.7 Score=17.00 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.2 Q ss_pred HHHHCCCEECCC Q ss_conf 897323045736 Q gi|254780832|r 19 MFESIGVVYGDI 30 (628) Q Consensus 19 ~~~alGvV~GDI 30 (628) +++|+||++||| T Consensus 62 ~~qA~GialG~i 73 (132) T 3hlz_A 62 EWLAIGITVCAI 73 (132) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999768999999 No 5 >>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* (A:) Probab=25.99 E-value=31 Score=12.74 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=13.7 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 93462048889899999 Q gi|254780832|r 54 ERTEVIGLVSLMIWVLT 70 (628) Q Consensus 54 ~~~~v~G~lSli~Wtl~ 70 (628) ...+|+|++-||.|-|- T Consensus 11 ~aasiiGilHliLWild 27 (43) T 2kih_A 11 VAANIIGILHLILWILD 27 (43) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 6 >>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} (A:) Probab=23.57 E-value=25 Score=13.30 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH Q ss_conf 77899999999965--00346999999 Q gi|254780832|r 110 LIALGLAGSALFIG--DSMVTPALSVL 134 (628) Q Consensus 110 ~~~~gligaa~ll~--D~iLTpAISVl 134 (628) .+.+|-+|-|++.| ||+|-||..+- T Consensus 5 viLlG~vGLsa~~G~LDyVLlPALa~F 31 (46) T 1waz_A 5 VILLGVVGLSALTGYLDYVLLPALAIF 31 (46) T ss_dssp HHHHHHHHHHHCCSCCCCCSCCHHHHH T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 612987789999999999999999999 No 7 >>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} (A:335-416) Probab=19.93 E-value=40 Score=11.98 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=29.9 Q ss_pred CCCCCCCCEEEEEECCCCEEEEEEE--------ECCCCCCCHHHHHHHHHHCCC Q ss_conf 5636755179999737997999999--------467667898999999997389 Q gi|254780832|r 521 QPRIPKEKRFVCEKISEHFSRVELF--------FGYMEEQNVSQALAELRNNGL 566 (628) Q Consensus 521 ~P~V~~~eR~~v~~l~~g~~rv~~r--------yGf~e~p~i~~~L~~~~~~~i 566 (628) +|+-++++.+++++.++|.|+|.-. +-|-+.-++....+.+...|+ T Consensus 1 v~k~~~~~~f~I~~~~~g~f~V~G~~ier~~~~~~~~~~es~~~f~~~L~~~Gv 54 (82) T 1udx_A 1 VPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGV 54 (82) T ss_dssp CC----CCCCEEEEEETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTH T ss_pred CCCHHCCCCCEEEECCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC T ss_conf 444001446679985587299975399999975669878999999999998780 No 8 >>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} (A:133-238) Probab=15.67 E-value=50 Score=11.34 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.4 Q ss_pred EEECCCC-CCCHHHHHHHHHHCCCC Q ss_conf 9946766-78989999999973899 Q gi|254780832|r 544 LFFGYME-EQNVSQALAELRNNGLK 567 (628) Q Consensus 544 ~ryGf~e-~p~i~~~L~~~~~~~i~ 567 (628) +..||+| +|++++.++++..+|.+ T Consensus 37 v~va~le~~P~i~~~i~~l~~~G~~ 61 (106) T 1qgo_A 37 ARVGAVESYPEVDILIDSLRDEGVT 61 (106) T ss_dssp EEEEETTSSSCHHHHHHHHHHHTCC T ss_pred EEEEEEEECCCHHHHHHHHHHCCCC T ss_conf 5999985069889999998745798 No 9 >>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} (B:1-202) Probab=15.30 E-value=51 Score=11.28 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=35.6 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCC Q ss_conf 76678989999999973899888624999998888726888 Q gi|254780832|r 548 YMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRA 588 (628) Q Consensus 548 f~e~p~i~~~L~~~~~~~i~~~~~~~sfflgre~l~~~~~~ 588 (628) |-+.||..+.+..+-..|.++++...+-++|...+..+..+ T Consensus 124 ~G~DpNWGRI~aAiG~sg~~~d~~~i~i~~g~v~v~~~G~~ 164 (202) T 1vra_B 124 YGADANWGRIICAIGYSGCEVNQETIDIAIGPIVTLKQSEP 164 (202) T ss_dssp HTTCCCHHHHHHHHHHSSSCCCTTSCEEEETTEEEEETTEE T ss_pred HHCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCC T ss_conf 50288613541122205643001212024313000217835 No 10 >>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:) Probab=15.11 E-value=52 Score=11.25 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=14.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 86999999999999999989999999998 Q gi|254780832|r 429 GGYTPLLIASLCIIVMWTWRRGTNLLSTL 457 (628) Q Consensus 429 GgW~~lli~~il~~iM~~W~~G~~~~~~~ 457 (628) |+|..++...+++.+||---.--..++++ T Consensus 1 ~~~~~~~~~v~i~~ifYFllIRPQ~Kr~K 29 (37) T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTK 29 (37) T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 91889999999999999999372178899 Done!