Query         gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 628
No_of_seqs    195 out of 803
Neff          5.8 
Searched_HMMs 33803
Date          Wed Jun  1 17:28:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780832.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3gia_A Uncharacterized protei  99.6 5.7E-10 1.7E-14   82.1  33.8  362   73-460    55-433 (444)
  2 >3l1l_A Arginine/agmatine anti  99.5 8.9E-10 2.6E-14   80.9  28.6  340   20-388    13-371 (445)
  3 >3bkd_A Transmembrane domain o  37.4      19 0.00057   14.0   1.9   16   55-70      8-23  (26)
  4 >3hlz_A Uncharacterized protei  31.8     6.7  0.0002   17.0  -1.2   12   19-30     62-73  (132)
  5 >2kih_A Matrix protein 2; S31N  26.0      31  0.0009   12.7   1.9   17   54-70     11-27  (43)
  6 >1waz_A MERF; protein structur  23.6      25 0.00074   13.3   0.6   25  110-134     5-31  (46)
  7 >1udx_A The GTP-binding protei  19.9      40  0.0012   12.0   2.0   46  521-566     1-54  (82)
  8 >1qgo_A CBIK protein, anaerobi  15.7      50  0.0015   11.3   2.9   24  544-567    37-61  (106)
  9 >1vra_B Arginine biosynthesis   15.3      51  0.0015   11.3   3.3   41  548-588   124-164 (202)
 10 >2rdd_B UPF0092 membrane prote  15.1      52  0.0015   11.2   3.5   29  429-457     1-29  (37)

No 1  
>>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C (A:)
Probab=99.58  E-value=5.7e-10  Score=82.11  Aligned_cols=362  Identities=11%  Similarity=0.031  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             99999988741078998138999999987267554257789999999996500346999999987246642736676128
Q gi|254780832|r   73 VTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFII  152 (628)
Q Consensus        73 v~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v  152 (628)
                      +..-|..+.  .....+||...-   ..+..++.      .|-..+-....++.+..+.......+.+....|.......
T Consensus        55 ~~~~~ael~--~~~p~~gg~~~~---~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (444)
T 3gia_A           55 VAYSYTKLG--AKIVSNAGPIAF---IHKAIGDN------IITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTF  123 (444)
T ss_dssp             HHHHHHHHH--TTCCCTTTHHHH---HHHHHCSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHH--HHCCCCCCHHHH---HHHHHCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999--964899709999---99995818------9999999999998877899999999987500023456653


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99999999999750001899999845999999999999999865---01874444--67968999999837435899998
Q gi|254780832|r  153 LIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI---SDDWGILA--AFNPMYALHMVFGKGTISLVVLG  227 (628)
Q Consensus       153 ~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i---~~~p~vl~--a~~P~~~~~~~~~~~~~g~~~lg  227 (628)
                      ...+..+........+........+.-...+....+...+....   ........  ...|.....        .+.++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  195 (444)
T 3gia_A          124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSG--------MIFASA  195 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHH--------HHHHHH
T ss_pred             CHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CHHHHH
T ss_conf             324667666530204420125788888899998866278899761000025765432223455554--------123555


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHH-HHHC-CHHH-H---HHH----HHHHCCCCHHHH
Q ss_conf             9999851087874364546711699999--9999999999974786-8735-9245-5---203----687278632899
Q gi|254780832|r  228 SVFLTITGAEALYADLGHFGRKPIQYAW--MVIFPALAINYLGQGA-LVLS-NPEA-I---KDP----FYMMFGGWFLPF  295 (628)
Q Consensus       228 ~v~La~TG~EAl~advghF~~~~i~~aw--~~v~~~L~l~y~Gq~a-~ll~-~~~~-~---~~~----f~~~~p~~~~~~  295 (628)
                      ..+-+.+|.|+..+-.+..++|.-+...  ..........|..-.. .... .++. .   .++    +....+++....
T Consensus       196 ~~~~~~~G~~~~~~~a~E~k~p~k~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (444)
T 3gia_A          196 IFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLL  275 (444)
T ss_dssp             HGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHCCCHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             43320233100000001110233321210001224530356688987603467233301222222111111223016888


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999999603010025899999997599886568703887657110068999999998887773268889887899
Q gi|254780832|r  296 AVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYG  375 (628)
Q Consensus       296 ~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYg  375 (628)
                      +.+...++.+-..++...+.-+++....++|.+|+. +.+++++.    .  -.+......+++..+.+.+-+.+++++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (444)
T 3gia_A          276 ISIGALFSISSAMNATIYGGANVAYSLAKDGELPEF-FERKVWFK----S--TEGLYITSALGVLFALLFNMEGVASITS  348 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSS-CCTTSCCS----C--THHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH-HCCCCCCC----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             776776630578999998866455435405915411-10147887----7--5146899999999999973999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999989999999998358569999999999999999999999985234869999999999999999899999999
Q gi|254780832|r  376 ISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS  455 (628)
Q Consensus       376 i~V~~tf~lTt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~Kf~~GgW~~lli~~il~~iM~~W~~G~~~~~  455 (628)
                      ++......+......+..+++.+.++............+-+............--........+++.....|++.++...
T Consensus       349 ~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (444)
T 3gia_A          349 AVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFS  428 (444)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
T ss_conf             99999999999999999885277888603899999999999999998615999999999999999999987403463267


Q ss_pred             HHHHH
Q ss_conf             98642
Q gi|254780832|r  456 TLTRH  460 (628)
Q Consensus       456 ~~~~~  460 (628)
                      +..++
T Consensus       429 ~~~~~  433 (444)
T 3gia_A          429 NNMYV  433 (444)
T ss_dssp             GGGTT
T ss_pred             CCCEE
T ss_conf             88443


No 2  
>>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:)
Probab=99.49  E-value=8.9e-10  Score=80.89  Aligned_cols=340  Identities=13%  Similarity=0.068  Sum_probs=196.5

Q ss_pred             HHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             97323045736766789999971477777777899346204888989999-99999999988741078998138999999
Q gi|254780832|r   20 FESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVL-TIVVTIKYILLLLRADNDGEGGILSLLAL   98 (628)
Q Consensus        20 ~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl-~liv~vKYv~~~l~adn~GEGGi~aL~sl   98 (628)
                      ++..+..+|.+-.+-+++......+.++           -..++.++..+ .+....-|.....+.  ..+||...   -
T Consensus        13 ~~~~~l~~~~~ig~g~f~~~g~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~ael~~~~--p~~gg~~~---~   76 (445)
T 3l1l_A           13 IPVTLMVSGAIMGSGVFLLPANLASTGG-----------IAIYGWLVTIIGALGLSMVYAKMSFLD--PSPGGSYA---Y   76 (445)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHCT-----------HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCTTTHHH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH---H
T ss_conf             9999999999999999999999999999-----------999999999999999999999999975--89980999---9


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987267554257789999999996500346999999987246642736676--128999999999997500018999998
Q gi|254780832|r   99 LLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN--FIILIALGILVLLFMLQSHGTKGVACF  176 (628)
Q Consensus        99 ~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~--~~v~iai~il~~Lf~iq~rGt~~~g~~  176 (628)
                      ..|..++      ..|...+-....++....+.......+.+....|....  ......+.++.....+|..|.+..++.
T Consensus        77 ~~~~~g~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (445)
T 3l1l_A           77 ARRCFGP------FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRV  150 (445)
T ss_dssp             HHHHSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999683------8999999999999999999999999875543166458806889999999999999999868989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHH
Q ss_conf             45999999999999999865018744446796899999983743589999899998510878743645467116--9999
Q gi|254780832|r  177 FSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALYADLGHFGRKP--IQYA  254 (628)
Q Consensus       177 F~pi~~lwf~~i~~~gi~~i~~~p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~EAl~advghF~~~~--i~~a  254 (628)
                      ....+.+-...+...................+.   ..........+..+...+-+.+|.|+..+-.+..++|.  +..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~p~~~~p~a  227 (445)
T 3l1l_A          151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWN---VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA  227 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC--------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH
T ss_pred             HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH
T ss_conf             999999998743577760100346886667878---88777501699999999999843654202167641721100354


Q ss_pred             HHH-----HHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             999-----99999999974786873592455203----687278632899999999999996030100258999999975
Q gi|254780832|r  255 WMV-----IFPALAINYLGQGALVLSNPEAIKDP----FYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHL  325 (628)
Q Consensus       255 w~~-----v~~~L~l~y~Gq~a~ll~~~~~~~~~----f~~~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l  325 (628)
                      ...     .....+..+.........+......+    +....+.+.-+.+.....++.+-...+.+.+.-+++.+..++
T Consensus       228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d  307 (445)
T 3l1l_A          228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD  307 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             33104234678999999999646587750556700899998244105556568887775320356877741677998846


Q ss_pred             CCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998865687038876571100689999999988877732-----688898878999999999998999
Q gi|254780832|r  326 GFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGF-----RHSESLVAAYGISVSGTMVISTIM  388 (628)
Q Consensus       326 ~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f-----~~s~~L~~aYgi~V~~tf~lTt~l  388 (628)
                      |.+|+.    .+.+.++....+.+.....+..++..+..     ...+.+.+...++...+..+....
T Consensus       308 g~lP~~----~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~  371 (445)
T 3l1l_A          308 GLFPPI----FARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAA  371 (445)
T ss_dssp             TSSCGG----GGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHH----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987776----7645999891789999999999999999961389999999999999999999999999


No 3  
>>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} (A:)
Probab=37.42  E-value=19  Score=14.03  Aligned_cols=16  Identities=25%  Similarity=0.987  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             3462048889899999
Q gi|254780832|r   55 RTEVIGLVSLMIWVLT   70 (628)
Q Consensus        55 ~~~v~G~lSli~Wtl~   70 (628)
                      ..+|+|++-||.|.|-
T Consensus         8 aasiigilhlilwild   23 (26)
T 3bkd_A            8 AASIMGILHLILWILD   23 (26)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999997


No 4  
>>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} (A:138-269)
Probab=31.81  E-value=6.7  Score=17.00  Aligned_cols=12  Identities=25%  Similarity=0.396  Sum_probs=5.2

Q ss_pred             HHHHCCCEECCC
Q ss_conf             897323045736
Q gi|254780832|r   19 MFESIGVVYGDI   30 (628)
Q Consensus        19 ~~~alGvV~GDI   30 (628)
                      +++|+||++|||
T Consensus        62 ~~qA~GialG~i   73 (132)
T 3hlz_A           62 EWLAIGITVCAI   73 (132)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999768999999


No 5  
>>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* (A:)
Probab=25.99  E-value=31  Score=12.74  Aligned_cols=17  Identities=29%  Similarity=0.935  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             93462048889899999
Q gi|254780832|r   54 ERTEVIGLVSLMIWVLT   70 (628)
Q Consensus        54 ~~~~v~G~lSli~Wtl~   70 (628)
                      ...+|+|++-||.|-|-
T Consensus        11 ~aasiiGilHliLWild   27 (43)
T 2kih_A           11 VAANIIGILHLILWILD   27 (43)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999


No 6  
>>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii} (A:)
Probab=23.57  E-value=25  Score=13.30  Aligned_cols=25  Identities=36%  Similarity=0.728  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             77899999999965--00346999999
Q gi|254780832|r  110 LIALGLAGSALFIG--DSMVTPALSVL  134 (628)
Q Consensus       110 ~~~~gligaa~ll~--D~iLTpAISVl  134 (628)
                      .+.+|-+|-|++.|  ||+|-||..+-
T Consensus         5 viLlG~vGLsa~~G~LDyVLlPALa~F   31 (46)
T 1waz_A            5 VILLGVVGLSALTGYLDYVLLPALAIF   31 (46)
T ss_dssp             HHHHHHHHHHHCCSCCCCCSCCHHHHH
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             612987789999999999999999999


No 7  
>>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} (A:335-416)
Probab=19.93  E-value=40  Score=11.98  Aligned_cols=46  Identities=13%  Similarity=0.046  Sum_probs=29.9

Q ss_pred             CCCCCCCCEEEEEECCCCEEEEEEE--------ECCCCCCCHHHHHHHHHHCCC
Q ss_conf             5636755179999737997999999--------467667898999999997389
Q gi|254780832|r  521 QPRIPKEKRFVCEKISEHFSRVELF--------FGYMEEQNVSQALAELRNNGL  566 (628)
Q Consensus       521 ~P~V~~~eR~~v~~l~~g~~rv~~r--------yGf~e~p~i~~~L~~~~~~~i  566 (628)
                      +|+-++++.+++++.++|.|+|.-.        +-|-+.-++....+.+...|+
T Consensus         1 v~k~~~~~~f~I~~~~~g~f~V~G~~ier~~~~~~~~~~es~~~f~~~L~~~Gv   54 (82)
T 1udx_A            1 VPRKEVQAGVEVVPVAEGVYEVRAPEVERYLARIKGDLMEAAGYLQEVFRRQGV   54 (82)
T ss_dssp             CC----CCCCEEEEEETTEEEEECHHHHHHHTTEEECTGGGHHHHHHHHHHTTH
T ss_pred             CCCHHCCCCCEEEECCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf             444001446679985587299975399999975669878999999999998780


No 8  
>>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} (A:133-238)
Probab=15.67  E-value=50  Score=11.34  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             EEECCCC-CCCHHHHHHHHHHCCCC
Q ss_conf             9946766-78989999999973899
Q gi|254780832|r  544 LFFGYME-EQNVSQALAELRNNGLK  567 (628)
Q Consensus       544 ~ryGf~e-~p~i~~~L~~~~~~~i~  567 (628)
                      +..||+| +|++++.++++..+|.+
T Consensus        37 v~va~le~~P~i~~~i~~l~~~G~~   61 (106)
T 1qgo_A           37 ARVGAVESYPEVDILIDSLRDEGVT   61 (106)
T ss_dssp             EEEEETTSSSCHHHHHHHHHHHTCC
T ss_pred             EEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf             5999985069889999998745798


No 9  
>>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans} (B:1-202)
Probab=15.30  E-value=51  Score=11.28  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf             76678989999999973899888624999998888726888
Q gi|254780832|r  548 YMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRA  588 (628)
Q Consensus       548 f~e~p~i~~~L~~~~~~~i~~~~~~~sfflgre~l~~~~~~  588 (628)
                      |-+.||..+.+..+-..|.++++...+-++|...+..+..+
T Consensus       124 ~G~DpNWGRI~aAiG~sg~~~d~~~i~i~~g~v~v~~~G~~  164 (202)
T 1vra_B          124 YGADANWGRIICAIGYSGCEVNQETIDIAIGPIVTLKQSEP  164 (202)
T ss_dssp             HTTCCCHHHHHHHHHHSSSCCCTTSCEEEETTEEEEETTEE
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCC
T ss_conf             50288613541122205643001212024313000217835


No 10 
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=15.11  E-value=52  Score=11.25  Aligned_cols=29  Identities=7%  Similarity=0.020  Sum_probs=14.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86999999999999999989999999998
Q gi|254780832|r  429 GGYTPLLIASLCIIVMWTWRRGTNLLSTL  457 (628)
Q Consensus       429 GgW~~lli~~il~~iM~~W~~G~~~~~~~  457 (628)
                      |+|..++...+++.+||---.--..++++
T Consensus         1 ~~~~~~~~~v~i~~ifYFllIRPQ~Kr~K   29 (37)
T 2rdd_B            1 SPMSLILMLVVFGLIFYFMILRPQQKRTK   29 (37)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             91889999999999999999372178899


Done!